2024-05-15T16:30:21,735 Created temporary directory: /tmp/pip-build-tracker-tz6ybm46 2024-05-15T16:30:21,737 Initialized build tracking at /tmp/pip-build-tracker-tz6ybm46 2024-05-15T16:30:21,738 Created build tracker: /tmp/pip-build-tracker-tz6ybm46 2024-05-15T16:30:21,739 Entered build tracker: /tmp/pip-build-tracker-tz6ybm46 2024-05-15T16:30:21,741 Created temporary directory: /tmp/pip-wheel-1zv9vysu 2024-05-15T16:30:21,745 Created temporary directory: /tmp/pip-ephem-wheel-cache-ie1h97xy 2024-05-15T16:30:21,771 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2024-05-15T16:30:21,774 2 location(s) to search for versions of brainglobe-atlasapi: 2024-05-15T16:30:21,774 * https://pypi.org/simple/brainglobe-atlasapi/ 2024-05-15T16:30:21,774 * https://www.piwheels.org/simple/brainglobe-atlasapi/ 2024-05-15T16:30:21,775 Fetching project page and analyzing links: https://pypi.org/simple/brainglobe-atlasapi/ 2024-05-15T16:30:21,776 Getting page https://pypi.org/simple/brainglobe-atlasapi/ 2024-05-15T16:30:21,777 Found index url https://pypi.org/simple/ 2024-05-15T16:30:21,921 Fetched page https://pypi.org/simple/brainglobe-atlasapi/ as application/vnd.pypi.simple.v1+json 2024-05-15T16:30:21,925 Found link https://files.pythonhosted.org/packages/94/5d/aa9e95d6061393eb9f2184e2a9fdab7d9d404ffb9e8a92555689bc696017/brainglobe-atlasapi-2.0.0.tar.gz (from https://pypi.org/simple/brainglobe-atlasapi/) (requires-python:>=3.9), version: 2.0.0 2024-05-15T16:30:21,926 Skipping link: No binaries permitted for brainglobe-atlasapi: https://files.pythonhosted.org/packages/02/2d/b41a734b9d08e1e08e4090d1f3d69d880c8e11d96cf857a620264943cbb5/brainglobe_atlasapi-2.0.0-py3-none-any.whl (from https://pypi.org/simple/brainglobe-atlasapi/) (requires-python:>=3.9) 2024-05-15T16:30:21,927 Found link https://files.pythonhosted.org/packages/22/6c/8007408026e0a98e0d9e7f5b2679ccacfe18c270480a09e75ff95f395ffe/brainglobe-atlasapi-2.0.1.tar.gz (from https://pypi.org/simple/brainglobe-atlasapi/) (requires-python:>=3.9), version: 2.0.1 2024-05-15T16:30:21,928 Skipping link: No binaries permitted for brainglobe-atlasapi: https://files.pythonhosted.org/packages/a6/d9/ea6b4b2e2d81d2c4d7512eb4f89d3185eb3f72acb208a81e232f00247ec1/brainglobe_atlasapi-2.0.1-py3-none-any.whl (from https://pypi.org/simple/brainglobe-atlasapi/) (requires-python:>=3.9) 2024-05-15T16:30:21,928 Found link https://files.pythonhosted.org/packages/67/e4/e1268e42432b3be14f570730be1a3350333b8a85027c4156c4fee6057d77/brainglobe-atlasapi-2.0.2.tar.gz (from https://pypi.org/simple/brainglobe-atlasapi/) (requires-python:>=3.9), version: 2.0.2 2024-05-15T16:30:21,929 Skipping link: No binaries permitted for brainglobe-atlasapi: https://files.pythonhosted.org/packages/26/81/ff6f1ca65117f8e7ea4e840f90b77c0fbce04615f5bc52711c86ddb49ab0/brainglobe_atlasapi-2.0.2-py3-none-any.whl (from https://pypi.org/simple/brainglobe-atlasapi/) (requires-python:>=3.9) 2024-05-15T16:30:21,930 Found link https://files.pythonhosted.org/packages/c4/0b/6907f5c2329bdadd7208a883c633c5c5da48beae9439aac0a8bc6f7aa967/brainglobe-atlasapi-2.0.3.tar.gz (from https://pypi.org/simple/brainglobe-atlasapi/) (requires-python:>=3.9), version: 2.0.3 2024-05-15T16:30:21,931 Skipping link: No binaries permitted for brainglobe-atlasapi: https://files.pythonhosted.org/packages/81/e7/b6504f081c4481580326c1eff097f5fcdda3cbcb3e467a52ed2a433f209b/brainglobe_atlasapi-2.0.3-py3-none-any.whl (from https://pypi.org/simple/brainglobe-atlasapi/) (requires-python:>=3.9) 2024-05-15T16:30:21,932 Found link https://files.pythonhosted.org/packages/a1/05/63f30291d10561bdde617345d08a93cf222894873f3437868992c1e7e98e/brainglobe-atlasapi-2.0.4.tar.gz (from https://pypi.org/simple/brainglobe-atlasapi/) (requires-python:>=3.9), version: 2.0.4 2024-05-15T16:30:21,932 Skipping link: No binaries permitted for brainglobe-atlasapi: https://files.pythonhosted.org/packages/fc/16/86c8589b4f72708382411a9b5074572bf568b835ac9af963515cf0661b49/brainglobe_atlasapi-2.0.4-py3-none-any.whl (from https://pypi.org/simple/brainglobe-atlasapi/) (requires-python:>=3.9) 2024-05-15T16:30:21,933 Found link https://files.pythonhosted.org/packages/89/d6/77bcf09daa8fb694f86b9544817a4f12db2f1b3f329a228e19c4d67108f9/brainglobe-atlasapi-2.0.5.tar.gz (from https://pypi.org/simple/brainglobe-atlasapi/) (requires-python:>=3.9), version: 2.0.5 2024-05-15T16:30:21,934 Skipping link: No binaries permitted for brainglobe-atlasapi: https://files.pythonhosted.org/packages/f4/90/4d74f8627c90886a5abb9cb7bc636d02c2a3bc94bf68683841695b8c4131/brainglobe_atlasapi-2.0.5-py3-none-any.whl (from https://pypi.org/simple/brainglobe-atlasapi/) (requires-python:>=3.9) 2024-05-15T16:30:21,935 Skipping link: No binaries permitted for brainglobe-atlasapi: https://files.pythonhosted.org/packages/a8/dd/05f03d24fd57568fcd0b2125e9ce3ebf6ac6d5a94ae56d45b21d90700089/brainglobe_atlasapi-2.0.6-py3-none-any.whl (from https://pypi.org/simple/brainglobe-atlasapi/) (requires-python:>=3.9) 2024-05-15T16:30:21,935 Found link https://files.pythonhosted.org/packages/cf/bf/0421d2ebcb609c5e5dc847b548a84a7d1d5f8bd48162663197c4391beb85/brainglobe_atlasapi-2.0.6.tar.gz (from https://pypi.org/simple/brainglobe-atlasapi/) (requires-python:>=3.9), version: 2.0.6 2024-05-15T16:30:21,936 Fetching project page and analyzing links: https://www.piwheels.org/simple/brainglobe-atlasapi/ 2024-05-15T16:30:21,937 Getting page https://www.piwheels.org/simple/brainglobe-atlasapi/ 2024-05-15T16:30:21,938 Found index url https://www.piwheels.org/simple/ 2024-05-15T16:30:22,100 Fetched page https://www.piwheels.org/simple/brainglobe-atlasapi/ as text/html 2024-05-15T16:30:22,103 Skipping link: No binaries permitted for brainglobe-atlasapi: https://www.piwheels.org/simple/brainglobe-atlasapi/brainglobe_atlasapi-2.0.5-py3-none-any.whl#sha256=cab96900cfc376f6e6574cd4a76faff1f9852825fd13a5602f7a1e2d7d72c630 (from https://www.piwheels.org/simple/brainglobe-atlasapi/) (requires-python:>=3.9) 2024-05-15T16:30:22,104 Skipping link: No binaries permitted for brainglobe-atlasapi: https://www.piwheels.org/simple/brainglobe-atlasapi/brainglobe_atlasapi-2.0.4-py3-none-any.whl#sha256=0a7530f79c49e0c3943316ffabf7ffc0e551e85ff3080598473118f80dc2de5a (from https://www.piwheels.org/simple/brainglobe-atlasapi/) (requires-python:>=3.9) 2024-05-15T16:30:22,104 Skipping link: No binaries permitted for brainglobe-atlasapi: https://www.piwheels.org/simple/brainglobe-atlasapi/brainglobe_atlasapi-2.0.3-py3-none-any.whl#sha256=e09156e510d9f50b8ef4f233d9e1ff849730bc7e7c6637e6d213e3f234a524b6 (from https://www.piwheels.org/simple/brainglobe-atlasapi/) (requires-python:>=3.9) 2024-05-15T16:30:22,105 Skipping link: No binaries permitted for brainglobe-atlasapi: https://www.piwheels.org/simple/brainglobe-atlasapi/brainglobe_atlasapi-2.0.2-py3-none-any.whl#sha256=d213d9e3582e85a7b61afbe4b42dd9d1d557b2b006fe549a46a00777a51ca3db (from https://www.piwheels.org/simple/brainglobe-atlasapi/) (requires-python:>=3.9) 2024-05-15T16:30:22,106 Skipping link: No binaries permitted for brainglobe-atlasapi: https://www.piwheels.org/simple/brainglobe-atlasapi/brainglobe_atlasapi-2.0.1-py3-none-any.whl#sha256=d73a30d618071567cc1cc17cc2a5c914b373403d252e2556b2c4c8460481ca92 (from https://www.piwheels.org/simple/brainglobe-atlasapi/) (requires-python:>=3.9) 2024-05-15T16:30:22,106 Skipping link: No binaries permitted for brainglobe-atlasapi: https://www.piwheels.org/simple/brainglobe-atlasapi/brainglobe_atlasapi-2.0.0-py3-none-any.whl#sha256=08327d0766a86cc7dc8836cbced68c179e2f26baad4ae391d4440a8dd377a0f1 (from https://www.piwheels.org/simple/brainglobe-atlasapi/) (requires-python:>=3.9) 2024-05-15T16:30:22,107 Skipping link: not a file: https://www.piwheels.org/simple/brainglobe-atlasapi/ 2024-05-15T16:30:22,107 Skipping link: not a file: https://pypi.org/simple/brainglobe-atlasapi/ 2024-05-15T16:30:22,126 Given no hashes to check 1 links for project 'brainglobe-atlasapi': discarding no candidates 2024-05-15T16:30:22,145 Collecting brainglobe-atlasapi==2.0.6 2024-05-15T16:30:22,147 Created temporary directory: /tmp/pip-unpack-7w1z2tfy 2024-05-15T16:30:22,363 Downloading brainglobe_atlasapi-2.0.6.tar.gz (57 kB) 2024-05-15T16:30:22,512 Added brainglobe-atlasapi==2.0.6 from https://files.pythonhosted.org/packages/cf/bf/0421d2ebcb609c5e5dc847b548a84a7d1d5f8bd48162663197c4391beb85/brainglobe_atlasapi-2.0.6.tar.gz to build tracker '/tmp/pip-build-tracker-tz6ybm46' 2024-05-15T16:30:22,520 Created temporary directory: /tmp/pip-build-env-u11plb9t 2024-05-15T16:30:22,525 Installing build dependencies: started 2024-05-15T16:30:22,526 Running command pip subprocess to install build dependencies 2024-05-15T16:30:23,806 Using pip 24.0 from /usr/local/lib/python3.11/dist-packages/pip (python 3.11) 2024-05-15T16:30:24,311 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2024-05-15T16:30:25,879 Collecting setuptools>=45 2024-05-15T16:30:25,893 Using cached https://www.piwheels.org/simple/setuptools/setuptools-69.5.1-py3-none-any.whl (894 kB) 2024-05-15T16:30:26,115 Collecting wheel 2024-05-15T16:30:26,133 Using cached https://www.piwheels.org/simple/wheel/wheel-0.43.0-py3-none-any.whl (65 kB) 2024-05-15T16:30:26,411 Collecting setuptools_scm>=6.2 (from setuptools_scm[toml]>=6.2) 2024-05-15T16:30:26,424 Using cached https://www.piwheels.org/simple/setuptools-scm/setuptools_scm-8.1.0-py3-none-any.whl (43 kB) 2024-05-15T16:30:26,828 Collecting packaging>=20 (from setuptools_scm>=6.2->setuptools_scm[toml]>=6.2) 2024-05-15T16:30:26,866 Using cached https://www.piwheels.org/simple/packaging/packaging-24.0-py3-none-any.whl (53 kB) 2024-05-15T16:30:30,280 Installing collected packages: wheel, setuptools, packaging, setuptools_scm 2024-05-15T16:30:30,535 Creating /tmp/pip-build-env-u11plb9t/overlay/local/bin 2024-05-15T16:30:30,541 changing mode of /tmp/pip-build-env-u11plb9t/overlay/local/bin/wheel to 755 2024-05-15T16:30:34,793 Successfully installed packaging-24.0 setuptools-69.5.1 setuptools_scm-8.1.0 wheel-0.43.0 2024-05-15T16:30:35,304 Installing build dependencies: finished with status 'done' 2024-05-15T16:30:35,308 Getting requirements to build wheel: started 2024-05-15T16:30:35,309 Running command Getting requirements to build wheel 2024-05-15T16:30:36,270 running egg_info 2024-05-15T16:30:36,275 writing brainglobe_atlasapi.egg-info/PKG-INFO 2024-05-15T16:30:36,284 writing dependency_links to brainglobe_atlasapi.egg-info/dependency_links.txt 2024-05-15T16:30:36,286 writing entry points to brainglobe_atlasapi.egg-info/entry_points.txt 2024-05-15T16:30:36,290 writing requirements to brainglobe_atlasapi.egg-info/requires.txt 2024-05-15T16:30:36,291 writing top-level names to brainglobe_atlasapi.egg-info/top_level.txt 2024-05-15T16:30:36,335 ERROR setuptools_scm._file_finders.git listing git files failed - pretending there aren't any 2024-05-15T16:30:36,339 reading manifest file 'brainglobe_atlasapi.egg-info/SOURCES.txt' 2024-05-15T16:30:36,341 reading manifest template 'MANIFEST.in' 2024-05-15T16:30:36,343 warning: no files found matching 'requirements.txt' 2024-05-15T16:30:36,343 warning: no previously-included files found matching '.codecov.yml' 2024-05-15T16:30:36,344 warning: no previously-included files found matching '.pre-commit-config.yaml' 2024-05-15T16:30:36,345 warning: manifest_maker: MANIFEST.in, line 9: 'graft' expects a single 2024-05-15T16:30:36,346 no previously-included directories found matching 'tests' 2024-05-15T16:30:36,347 no previously-included directories found matching 'tutorials' 2024-05-15T16:30:36,348 no previously-included directories found matching 'brainglobe_atlasapi/atlas_generation/atlas_scripts/*' 2024-05-15T16:30:36,348 adding license file 'LICENSE' 2024-05-15T16:30:36,350 writing manifest file 'brainglobe_atlasapi.egg-info/SOURCES.txt' 2024-05-15T16:30:36,477 Getting requirements to build wheel: finished with status 'done' 2024-05-15T16:30:36,490 Created temporary directory: /tmp/pip-modern-metadata-_xu72p4l 2024-05-15T16:30:36,492 Preparing metadata (pyproject.toml): started 2024-05-15T16:30:36,493 Running command Preparing metadata (pyproject.toml) 2024-05-15T16:30:37,387 running dist_info 2024-05-15T16:30:37,394 creating /tmp/pip-modern-metadata-_xu72p4l/brainglobe_atlasapi.egg-info 2024-05-15T16:30:37,399 writing /tmp/pip-modern-metadata-_xu72p4l/brainglobe_atlasapi.egg-info/PKG-INFO 2024-05-15T16:30:37,407 writing dependency_links to /tmp/pip-modern-metadata-_xu72p4l/brainglobe_atlasapi.egg-info/dependency_links.txt 2024-05-15T16:30:37,409 writing entry points to /tmp/pip-modern-metadata-_xu72p4l/brainglobe_atlasapi.egg-info/entry_points.txt 2024-05-15T16:30:37,413 writing requirements to /tmp/pip-modern-metadata-_xu72p4l/brainglobe_atlasapi.egg-info/requires.txt 2024-05-15T16:30:37,414 writing top-level names to /tmp/pip-modern-metadata-_xu72p4l/brainglobe_atlasapi.egg-info/top_level.txt 2024-05-15T16:30:37,417 writing manifest file '/tmp/pip-modern-metadata-_xu72p4l/brainglobe_atlasapi.egg-info/SOURCES.txt' 2024-05-15T16:30:37,457 ERROR setuptools_scm._file_finders.git listing git files failed - pretending there aren't any 2024-05-15T16:30:37,460 reading manifest file '/tmp/pip-modern-metadata-_xu72p4l/brainglobe_atlasapi.egg-info/SOURCES.txt' 2024-05-15T16:30:37,463 reading manifest template 'MANIFEST.in' 2024-05-15T16:30:37,464 warning: no files found matching 'requirements.txt' 2024-05-15T16:30:37,465 warning: no previously-included files found matching '.codecov.yml' 2024-05-15T16:30:37,466 warning: no previously-included files found matching '.pre-commit-config.yaml' 2024-05-15T16:30:37,466 warning: manifest_maker: MANIFEST.in, line 9: 'graft' expects a single 2024-05-15T16:30:37,468 no previously-included directories found matching 'tests' 2024-05-15T16:30:37,468 no previously-included directories found matching 'tutorials' 2024-05-15T16:30:37,470 no previously-included directories found matching 'brainglobe_atlasapi/atlas_generation/atlas_scripts/*' 2024-05-15T16:30:37,470 adding license file 'LICENSE' 2024-05-15T16:30:37,473 writing manifest file '/tmp/pip-modern-metadata-_xu72p4l/brainglobe_atlasapi.egg-info/SOURCES.txt' 2024-05-15T16:30:37,475 creating '/tmp/pip-modern-metadata-_xu72p4l/brainglobe_atlasapi-2.0.6.dist-info' 2024-05-15T16:30:37,643 Preparing metadata (pyproject.toml): finished with status 'done' 2024-05-15T16:30:37,649 Source in /tmp/pip-wheel-1zv9vysu/brainglobe-atlasapi_c29522729d5546fe82be461aa78dcac7 has version 2.0.6, which satisfies requirement brainglobe-atlasapi==2.0.6 from https://files.pythonhosted.org/packages/cf/bf/0421d2ebcb609c5e5dc847b548a84a7d1d5f8bd48162663197c4391beb85/brainglobe_atlasapi-2.0.6.tar.gz 2024-05-15T16:30:37,650 Removed brainglobe-atlasapi==2.0.6 from https://files.pythonhosted.org/packages/cf/bf/0421d2ebcb609c5e5dc847b548a84a7d1d5f8bd48162663197c4391beb85/brainglobe_atlasapi-2.0.6.tar.gz from build tracker '/tmp/pip-build-tracker-tz6ybm46' 2024-05-15T16:30:37,657 Created temporary directory: /tmp/pip-unpack-e96k_k06 2024-05-15T16:30:37,658 Created temporary directory: /tmp/pip-unpack-oxmmgmoh 2024-05-15T16:30:37,710 Building wheels for collected packages: brainglobe-atlasapi 2024-05-15T16:30:37,714 Created temporary directory: /tmp/pip-wheel-0iqyorr_ 2024-05-15T16:30:37,715 Destination directory: /tmp/pip-wheel-0iqyorr_ 2024-05-15T16:30:37,717 Building wheel for brainglobe-atlasapi (pyproject.toml): started 2024-05-15T16:30:37,718 Running command Building wheel for brainglobe-atlasapi (pyproject.toml) 2024-05-15T16:30:38,556 running bdist_wheel 2024-05-15T16:30:38,579 running build 2024-05-15T16:30:38,580 running build_py 2024-05-15T16:30:38,586 creating build 2024-05-15T16:30:38,586 creating build/lib 2024-05-15T16:30:38,587 creating build/lib/brainglobe_atlasapi 2024-05-15T16:30:38,588 copying brainglobe_atlasapi/bg_atlas.py -> build/lib/brainglobe_atlasapi 2024-05-15T16:30:38,591 copying brainglobe_atlasapi/config.py -> build/lib/brainglobe_atlasapi 2024-05-15T16:30:38,592 copying brainglobe_atlasapi/update_atlases.py -> build/lib/brainglobe_atlasapi 2024-05-15T16:30:38,594 copying brainglobe_atlasapi/core.py -> build/lib/brainglobe_atlasapi 2024-05-15T16:30:38,597 copying brainglobe_atlasapi/utils.py -> build/lib/brainglobe_atlasapi 2024-05-15T16:30:38,599 copying brainglobe_atlasapi/__init__.py -> build/lib/brainglobe_atlasapi 2024-05-15T16:30:38,600 copying brainglobe_atlasapi/cli.py -> build/lib/brainglobe_atlasapi 2024-05-15T16:30:38,602 copying brainglobe_atlasapi/list_atlases.py -> build/lib/brainglobe_atlasapi 2024-05-15T16:30:38,604 copying brainglobe_atlasapi/descriptors.py -> build/lib/brainglobe_atlasapi 2024-05-15T16:30:38,606 copying brainglobe_atlasapi/structure_class.py -> build/lib/brainglobe_atlasapi 2024-05-15T16:30:38,607 copying brainglobe_atlasapi/structure_tree_util.py -> build/lib/brainglobe_atlasapi 2024-05-15T16:30:38,610 creating build/lib/brainglobe_atlasapi/atlas_generation 2024-05-15T16:30:38,611 copying brainglobe_atlasapi/atlas_generation/volume_utils.py -> build/lib/brainglobe_atlasapi/atlas_generation 2024-05-15T16:30:38,612 copying brainglobe_atlasapi/atlas_generation/metadata_utils.py -> build/lib/brainglobe_atlasapi/atlas_generation 2024-05-15T16:30:38,614 copying brainglobe_atlasapi/atlas_generation/main_script.py -> build/lib/brainglobe_atlasapi/atlas_generation 2024-05-15T16:30:38,616 copying brainglobe_atlasapi/atlas_generation/structures.py -> build/lib/brainglobe_atlasapi/atlas_generation 2024-05-15T16:30:38,618 copying brainglobe_atlasapi/atlas_generation/wrapup.py -> build/lib/brainglobe_atlasapi/atlas_generation 2024-05-15T16:30:38,620 copying brainglobe_atlasapi/atlas_generation/validate_atlases.py -> build/lib/brainglobe_atlasapi/atlas_generation 2024-05-15T16:30:38,622 copying brainglobe_atlasapi/atlas_generation/__init__.py -> build/lib/brainglobe_atlasapi/atlas_generation 2024-05-15T16:30:38,624 copying brainglobe_atlasapi/atlas_generation/stacks.py -> build/lib/brainglobe_atlasapi/atlas_generation 2024-05-15T16:30:38,626 copying brainglobe_atlasapi/atlas_generation/mesh_utils.py -> build/lib/brainglobe_atlasapi/atlas_generation 2024-05-15T16:30:38,628 copying brainglobe_atlasapi/atlas_generation/structure_json_to_csv.py -> build/lib/brainglobe_atlasapi/atlas_generation 2024-05-15T16:30:38,631 creating build/lib/brainglobe_atlasapi/atlas_generation/atlas_scripts 2024-05-15T16:30:38,631 copying brainglobe_atlasapi/atlas_generation/atlas_scripts/template_script.py -> build/lib/brainglobe_atlasapi/atlas_generation/atlas_scripts 2024-05-15T16:30:38,634 copying brainglobe_atlasapi/atlas_generation/atlas_scripts/allen_mouse.py -> build/lib/brainglobe_atlasapi/atlas_generation/atlas_scripts 2024-05-15T16:30:38,635 copying brainglobe_atlasapi/atlas_generation/atlas_scripts/osten_mouse.py -> build/lib/brainglobe_atlasapi/atlas_generation/atlas_scripts 2024-05-15T16:30:38,637 copying brainglobe_atlasapi/atlas_generation/atlas_scripts/perens_lsfm_mouse.py -> build/lib/brainglobe_atlasapi/atlas_generation/atlas_scripts 2024-05-15T16:30:38,640 copying brainglobe_atlasapi/atlas_generation/atlas_scripts/example_mouse.py -> build/lib/brainglobe_atlasapi/atlas_generation/atlas_scripts 2024-05-15T16:30:38,641 copying brainglobe_atlasapi/atlas_generation/atlas_scripts/azba_zfish.py -> build/lib/brainglobe_atlasapi/atlas_generation/atlas_scripts 2024-05-15T16:30:38,643 copying brainglobe_atlasapi/atlas_generation/atlas_scripts/kim_mouse.py -> build/lib/brainglobe_atlasapi/atlas_generation/atlas_scripts 2024-05-15T16:30:38,646 copying brainglobe_atlasapi/atlas_generation/atlas_scripts/humanatlas.py -> build/lib/brainglobe_atlasapi/atlas_generation/atlas_scripts 2024-05-15T16:30:38,648 copying brainglobe_atlasapi/atlas_generation/atlas_scripts/__init__.py -> build/lib/brainglobe_atlasapi/atlas_generation/atlas_scripts 2024-05-15T16:30:38,649 copying brainglobe_atlasapi/atlas_generation/atlas_scripts/whs_sd_rat.py -> build/lib/brainglobe_atlasapi/atlas_generation/atlas_scripts 2024-05-15T16:30:38,652 copying brainglobe_atlasapi/atlas_generation/atlas_scripts/kim_developmental_ccf_mouse.py -> build/lib/brainglobe_atlasapi/atlas_generation/atlas_scripts 2024-05-15T16:30:38,654 copying brainglobe_atlasapi/atlas_generation/atlas_scripts/allen_cord.py -> build/lib/brainglobe_atlasapi/atlas_generation/atlas_scripts 2024-05-15T16:30:38,657 copying brainglobe_atlasapi/atlas_generation/atlas_scripts/mpin_zfish.py -> build/lib/brainglobe_atlasapi/atlas_generation/atlas_scripts 2024-05-15T16:30:38,659 copying brainglobe_atlasapi/atlas_generation/atlas_scripts/princeton_mouse.py -> build/lib/brainglobe_atlasapi/atlas_generation/atlas_scripts 2024-05-15T16:30:38,661 copying brainglobe_atlasapi/atlas_generation/atlas_scripts/admba_3d_dev_mouse.py -> build/lib/brainglobe_atlasapi/atlas_generation/atlas_scripts 2024-05-15T16:30:38,663 running egg_info 2024-05-15T16:30:38,668 writing brainglobe_atlasapi.egg-info/PKG-INFO 2024-05-15T16:30:38,675 writing dependency_links to brainglobe_atlasapi.egg-info/dependency_links.txt 2024-05-15T16:30:38,676 writing entry points to brainglobe_atlasapi.egg-info/entry_points.txt 2024-05-15T16:30:38,679 writing requirements to brainglobe_atlasapi.egg-info/requires.txt 2024-05-15T16:30:38,681 writing top-level names to brainglobe_atlasapi.egg-info/top_level.txt 2024-05-15T16:30:38,711 ERROR setuptools_scm._file_finders.git listing git files failed - pretending there aren't any 2024-05-15T16:30:38,714 reading manifest file 'brainglobe_atlasapi.egg-info/SOURCES.txt' 2024-05-15T16:30:38,717 reading manifest template 'MANIFEST.in' 2024-05-15T16:30:38,718 warning: no files found matching 'requirements.txt' 2024-05-15T16:30:38,719 warning: no previously-included files found matching '.codecov.yml' 2024-05-15T16:30:38,719 warning: no previously-included files found matching '.pre-commit-config.yaml' 2024-05-15T16:30:38,720 warning: manifest_maker: MANIFEST.in, line 9: 'graft' expects a single 2024-05-15T16:30:38,721 no previously-included directories found matching 'tests' 2024-05-15T16:30:38,722 no previously-included directories found matching 'tutorials' 2024-05-15T16:30:38,722 no previously-included directories found matching 'brainglobe_atlasapi/atlas_generation/atlas_scripts/*' 2024-05-15T16:30:38,723 adding license file 'LICENSE' 2024-05-15T16:30:38,725 writing manifest file 'brainglobe_atlasapi.egg-info/SOURCES.txt' 2024-05-15T16:30:38,739 installing to build/bdist.linux-armv7l/wheel 2024-05-15T16:30:38,740 running install 2024-05-15T16:30:38,764 running install_lib 2024-05-15T16:30:38,770 creating build/bdist.linux-armv7l 2024-05-15T16:30:38,770 creating build/bdist.linux-armv7l/wheel 2024-05-15T16:30:38,772 creating build/bdist.linux-armv7l/wheel/brainglobe_atlasapi 2024-05-15T16:30:38,774 creating build/bdist.linux-armv7l/wheel/brainglobe_atlasapi/atlas_generation 2024-05-15T16:30:38,774 copying build/lib/brainglobe_atlasapi/atlas_generation/volume_utils.py -> build/bdist.linux-armv7l/wheel/brainglobe_atlasapi/atlas_generation 2024-05-15T16:30:38,777 copying build/lib/brainglobe_atlasapi/atlas_generation/metadata_utils.py -> build/bdist.linux-armv7l/wheel/brainglobe_atlasapi/atlas_generation 2024-05-15T16:30:38,779 copying build/lib/brainglobe_atlasapi/atlas_generation/main_script.py -> build/bdist.linux-armv7l/wheel/brainglobe_atlasapi/atlas_generation 2024-05-15T16:30:38,781 copying build/lib/brainglobe_atlasapi/atlas_generation/structures.py -> build/bdist.linux-armv7l/wheel/brainglobe_atlasapi/atlas_generation 2024-05-15T16:30:38,783 copying build/lib/brainglobe_atlasapi/atlas_generation/wrapup.py -> build/bdist.linux-armv7l/wheel/brainglobe_atlasapi/atlas_generation 2024-05-15T16:30:38,786 copying build/lib/brainglobe_atlasapi/atlas_generation/validate_atlases.py -> build/bdist.linux-armv7l/wheel/brainglobe_atlasapi/atlas_generation 2024-05-15T16:30:38,788 copying build/lib/brainglobe_atlasapi/atlas_generation/__init__.py -> build/bdist.linux-armv7l/wheel/brainglobe_atlasapi/atlas_generation 2024-05-15T16:30:38,790 copying build/lib/brainglobe_atlasapi/atlas_generation/stacks.py -> build/bdist.linux-armv7l/wheel/brainglobe_atlasapi/atlas_generation 2024-05-15T16:30:38,792 creating build/bdist.linux-armv7l/wheel/brainglobe_atlasapi/atlas_generation/atlas_scripts 2024-05-15T16:30:38,793 copying build/lib/brainglobe_atlasapi/atlas_generation/atlas_scripts/template_script.py -> build/bdist.linux-armv7l/wheel/brainglobe_atlasapi/atlas_generation/atlas_scripts 2024-05-15T16:30:38,795 copying build/lib/brainglobe_atlasapi/atlas_generation/atlas_scripts/allen_mouse.py -> build/bdist.linux-armv7l/wheel/brainglobe_atlasapi/atlas_generation/atlas_scripts 2024-05-15T16:30:38,797 copying build/lib/brainglobe_atlasapi/atlas_generation/atlas_scripts/osten_mouse.py -> build/bdist.linux-armv7l/wheel/brainglobe_atlasapi/atlas_generation/atlas_scripts 2024-05-15T16:30:38,799 copying build/lib/brainglobe_atlasapi/atlas_generation/atlas_scripts/perens_lsfm_mouse.py -> build/bdist.linux-armv7l/wheel/brainglobe_atlasapi/atlas_generation/atlas_scripts 2024-05-15T16:30:38,801 copying build/lib/brainglobe_atlasapi/atlas_generation/atlas_scripts/example_mouse.py -> build/bdist.linux-armv7l/wheel/brainglobe_atlasapi/atlas_generation/atlas_scripts 2024-05-15T16:30:38,803 copying build/lib/brainglobe_atlasapi/atlas_generation/atlas_scripts/azba_zfish.py -> build/bdist.linux-armv7l/wheel/brainglobe_atlasapi/atlas_generation/atlas_scripts 2024-05-15T16:30:38,805 copying build/lib/brainglobe_atlasapi/atlas_generation/atlas_scripts/kim_mouse.py -> build/bdist.linux-armv7l/wheel/brainglobe_atlasapi/atlas_generation/atlas_scripts 2024-05-15T16:30:38,807 copying build/lib/brainglobe_atlasapi/atlas_generation/atlas_scripts/humanatlas.py -> build/bdist.linux-armv7l/wheel/brainglobe_atlasapi/atlas_generation/atlas_scripts 2024-05-15T16:30:38,809 copying build/lib/brainglobe_atlasapi/atlas_generation/atlas_scripts/__init__.py -> build/bdist.linux-armv7l/wheel/brainglobe_atlasapi/atlas_generation/atlas_scripts 2024-05-15T16:30:38,811 copying build/lib/brainglobe_atlasapi/atlas_generation/atlas_scripts/whs_sd_rat.py -> build/bdist.linux-armv7l/wheel/brainglobe_atlasapi/atlas_generation/atlas_scripts 2024-05-15T16:30:38,814 copying build/lib/brainglobe_atlasapi/atlas_generation/atlas_scripts/kim_developmental_ccf_mouse.py -> build/bdist.linux-armv7l/wheel/brainglobe_atlasapi/atlas_generation/atlas_scripts 2024-05-15T16:30:38,817 copying build/lib/brainglobe_atlasapi/atlas_generation/atlas_scripts/allen_cord.py -> build/bdist.linux-armv7l/wheel/brainglobe_atlasapi/atlas_generation/atlas_scripts 2024-05-15T16:30:38,819 copying build/lib/brainglobe_atlasapi/atlas_generation/atlas_scripts/mpin_zfish.py -> build/bdist.linux-armv7l/wheel/brainglobe_atlasapi/atlas_generation/atlas_scripts 2024-05-15T16:30:38,821 copying build/lib/brainglobe_atlasapi/atlas_generation/atlas_scripts/princeton_mouse.py -> build/bdist.linux-armv7l/wheel/brainglobe_atlasapi/atlas_generation/atlas_scripts 2024-05-15T16:30:38,824 copying build/lib/brainglobe_atlasapi/atlas_generation/atlas_scripts/admba_3d_dev_mouse.py -> build/bdist.linux-armv7l/wheel/brainglobe_atlasapi/atlas_generation/atlas_scripts 2024-05-15T16:30:38,827 copying build/lib/brainglobe_atlasapi/atlas_generation/mesh_utils.py -> build/bdist.linux-armv7l/wheel/brainglobe_atlasapi/atlas_generation 2024-05-15T16:30:38,829 copying build/lib/brainglobe_atlasapi/atlas_generation/structure_json_to_csv.py -> build/bdist.linux-armv7l/wheel/brainglobe_atlasapi/atlas_generation 2024-05-15T16:30:38,831 copying build/lib/brainglobe_atlasapi/bg_atlas.py -> build/bdist.linux-armv7l/wheel/brainglobe_atlasapi 2024-05-15T16:30:38,833 copying build/lib/brainglobe_atlasapi/config.py -> build/bdist.linux-armv7l/wheel/brainglobe_atlasapi 2024-05-15T16:30:38,835 copying build/lib/brainglobe_atlasapi/update_atlases.py -> build/bdist.linux-armv7l/wheel/brainglobe_atlasapi 2024-05-15T16:30:38,837 copying build/lib/brainglobe_atlasapi/core.py -> build/bdist.linux-armv7l/wheel/brainglobe_atlasapi 2024-05-15T16:30:38,839 copying build/lib/brainglobe_atlasapi/utils.py -> build/bdist.linux-armv7l/wheel/brainglobe_atlasapi 2024-05-15T16:30:38,841 copying build/lib/brainglobe_atlasapi/__init__.py -> build/bdist.linux-armv7l/wheel/brainglobe_atlasapi 2024-05-15T16:30:38,843 copying build/lib/brainglobe_atlasapi/cli.py -> build/bdist.linux-armv7l/wheel/brainglobe_atlasapi 2024-05-15T16:30:38,844 copying build/lib/brainglobe_atlasapi/list_atlases.py -> build/bdist.linux-armv7l/wheel/brainglobe_atlasapi 2024-05-15T16:30:38,847 copying build/lib/brainglobe_atlasapi/descriptors.py -> build/bdist.linux-armv7l/wheel/brainglobe_atlasapi 2024-05-15T16:30:38,849 copying build/lib/brainglobe_atlasapi/structure_class.py -> build/bdist.linux-armv7l/wheel/brainglobe_atlasapi 2024-05-15T16:30:38,850 copying build/lib/brainglobe_atlasapi/structure_tree_util.py -> build/bdist.linux-armv7l/wheel/brainglobe_atlasapi 2024-05-15T16:30:38,852 running install_egg_info 2024-05-15T16:30:38,857 Copying brainglobe_atlasapi.egg-info to build/bdist.linux-armv7l/wheel/brainglobe_atlasapi-2.0.6-py3.11.egg-info 2024-05-15T16:30:38,869 running install_scripts 2024-05-15T16:30:38,891 creating build/bdist.linux-armv7l/wheel/brainglobe_atlasapi-2.0.6.dist-info/WHEEL 2024-05-15T16:30:38,893 creating '/tmp/pip-wheel-0iqyorr_/.tmp-2a6amjus/brainglobe_atlasapi-2.0.6-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2024-05-15T16:30:38,896 adding 'brainglobe_atlasapi/__init__.py' 2024-05-15T16:30:38,897 adding 'brainglobe_atlasapi/bg_atlas.py' 2024-05-15T16:30:38,899 adding 'brainglobe_atlasapi/cli.py' 2024-05-15T16:30:38,901 adding 'brainglobe_atlasapi/config.py' 2024-05-15T16:30:38,903 adding 'brainglobe_atlasapi/core.py' 2024-05-15T16:30:38,904 adding 'brainglobe_atlasapi/descriptors.py' 2024-05-15T16:30:38,906 adding 'brainglobe_atlasapi/list_atlases.py' 2024-05-15T16:30:38,907 adding 'brainglobe_atlasapi/structure_class.py' 2024-05-15T16:30:38,909 adding 'brainglobe_atlasapi/structure_tree_util.py' 2024-05-15T16:30:38,911 adding 'brainglobe_atlasapi/update_atlases.py' 2024-05-15T16:30:38,912 adding 'brainglobe_atlasapi/utils.py' 2024-05-15T16:30:38,914 adding 'brainglobe_atlasapi/atlas_generation/__init__.py' 2024-05-15T16:30:38,916 adding 'brainglobe_atlasapi/atlas_generation/main_script.py' 2024-05-15T16:30:38,918 adding 'brainglobe_atlasapi/atlas_generation/mesh_utils.py' 2024-05-15T16:30:38,919 adding 'brainglobe_atlasapi/atlas_generation/metadata_utils.py' 2024-05-15T16:30:38,921 adding 'brainglobe_atlasapi/atlas_generation/stacks.py' 2024-05-15T16:30:38,922 adding 'brainglobe_atlasapi/atlas_generation/structure_json_to_csv.py' 2024-05-15T16:30:38,923 adding 'brainglobe_atlasapi/atlas_generation/structures.py' 2024-05-15T16:30:38,925 adding 'brainglobe_atlasapi/atlas_generation/validate_atlases.py' 2024-05-15T16:30:38,926 adding 'brainglobe_atlasapi/atlas_generation/volume_utils.py' 2024-05-15T16:30:38,928 adding 'brainglobe_atlasapi/atlas_generation/wrapup.py' 2024-05-15T16:30:38,930 adding 'brainglobe_atlasapi/atlas_generation/atlas_scripts/__init__.py' 2024-05-15T16:30:38,932 adding 'brainglobe_atlasapi/atlas_generation/atlas_scripts/admba_3d_dev_mouse.py' 2024-05-15T16:30:38,934 adding 'brainglobe_atlasapi/atlas_generation/atlas_scripts/allen_cord.py' 2024-05-15T16:30:38,936 adding 'brainglobe_atlasapi/atlas_generation/atlas_scripts/allen_mouse.py' 2024-05-15T16:30:38,937 adding 'brainglobe_atlasapi/atlas_generation/atlas_scripts/azba_zfish.py' 2024-05-15T16:30:38,939 adding 'brainglobe_atlasapi/atlas_generation/atlas_scripts/example_mouse.py' 2024-05-15T16:30:38,941 adding 'brainglobe_atlasapi/atlas_generation/atlas_scripts/humanatlas.py' 2024-05-15T16:30:38,943 adding 'brainglobe_atlasapi/atlas_generation/atlas_scripts/kim_developmental_ccf_mouse.py' 2024-05-15T16:30:38,944 adding 'brainglobe_atlasapi/atlas_generation/atlas_scripts/kim_mouse.py' 2024-05-15T16:30:38,946 adding 'brainglobe_atlasapi/atlas_generation/atlas_scripts/mpin_zfish.py' 2024-05-15T16:30:38,948 adding 'brainglobe_atlasapi/atlas_generation/atlas_scripts/osten_mouse.py' 2024-05-15T16:30:38,950 adding 'brainglobe_atlasapi/atlas_generation/atlas_scripts/perens_lsfm_mouse.py' 2024-05-15T16:30:38,952 adding 'brainglobe_atlasapi/atlas_generation/atlas_scripts/princeton_mouse.py' 2024-05-15T16:30:38,953 adding 'brainglobe_atlasapi/atlas_generation/atlas_scripts/template_script.py' 2024-05-15T16:30:38,955 adding 'brainglobe_atlasapi/atlas_generation/atlas_scripts/whs_sd_rat.py' 2024-05-15T16:30:38,957 adding 'brainglobe_atlasapi-2.0.6.dist-info/LICENSE' 2024-05-15T16:30:38,959 adding 'brainglobe_atlasapi-2.0.6.dist-info/METADATA' 2024-05-15T16:30:38,960 adding 'brainglobe_atlasapi-2.0.6.dist-info/WHEEL' 2024-05-15T16:30:38,961 adding 'brainglobe_atlasapi-2.0.6.dist-info/entry_points.txt' 2024-05-15T16:30:38,962 adding 'brainglobe_atlasapi-2.0.6.dist-info/top_level.txt' 2024-05-15T16:30:38,963 adding 'brainglobe_atlasapi-2.0.6.dist-info/RECORD' 2024-05-15T16:30:38,966 removing build/bdist.linux-armv7l/wheel 2024-05-15T16:30:39,104 Building wheel for brainglobe-atlasapi (pyproject.toml): finished with status 'done' 2024-05-15T16:30:39,111 Created wheel for brainglobe-atlasapi: filename=brainglobe_atlasapi-2.0.6-py3-none-any.whl size=80597 sha256=8442140366929671318cb53f3d6cb3ce0e32a81a38010452de92ae767da3ce8f 2024-05-15T16:30:39,112 Stored in directory: /tmp/pip-ephem-wheel-cache-ie1h97xy/wheels/c0/f9/f3/4cc03c37469e614a456e0ac9f15bea11e4a4ac15149bd7183c 2024-05-15T16:30:39,128 Successfully built brainglobe-atlasapi 2024-05-15T16:30:39,133 Removed build tracker: '/tmp/pip-build-tracker-tz6ybm46'