2024-05-16T14:07:31,126 Created temporary directory: /tmp/pip-build-tracker-zyw_vdrz 2024-05-16T14:07:31,128 Initialized build tracking at /tmp/pip-build-tracker-zyw_vdrz 2024-05-16T14:07:31,128 Created build tracker: /tmp/pip-build-tracker-zyw_vdrz 2024-05-16T14:07:31,128 Entered build tracker: /tmp/pip-build-tracker-zyw_vdrz 2024-05-16T14:07:31,129 Created temporary directory: /tmp/pip-wheel-cq_yzdhj 2024-05-16T14:07:31,132 Created temporary directory: /tmp/pip-ephem-wheel-cache-mj9ik82z 2024-05-16T14:07:31,154 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2024-05-16T14:07:31,158 2 location(s) to search for versions of brainglobe-workflows: 2024-05-16T14:07:31,158 * https://pypi.org/simple/brainglobe-workflows/ 2024-05-16T14:07:31,158 * https://www.piwheels.org/simple/brainglobe-workflows/ 2024-05-16T14:07:31,158 Fetching project page and analyzing links: https://pypi.org/simple/brainglobe-workflows/ 2024-05-16T14:07:31,159 Getting page https://pypi.org/simple/brainglobe-workflows/ 2024-05-16T14:07:31,161 Found index url https://pypi.org/simple/ 2024-05-16T14:07:31,375 Fetched page https://pypi.org/simple/brainglobe-workflows/ as application/vnd.pypi.simple.v1+json 2024-05-16T14:07:31,379 Found link https://files.pythonhosted.org/packages/86/ff/7475753a7ca5ced322da02ae703996835522e454697fda6be04040de6f3b/brainglobe-workflows-1.0.0.tar.gz (from https://pypi.org/simple/brainglobe-workflows/) (requires-python:>=3.9), version: 1.0.0 2024-05-16T14:07:31,380 Skipping link: No binaries permitted for brainglobe-workflows: https://files.pythonhosted.org/packages/fd/3d/3ba19433653c5f8e4e1fefb3453ff6c6fb161c65970589784ad8d493dfc4/brainglobe_workflows-1.0.0-py3-none-any.whl (from https://pypi.org/simple/brainglobe-workflows/) (requires-python:>=3.9) 2024-05-16T14:07:31,381 Found link https://files.pythonhosted.org/packages/2c/2c/63316da6fb3b7dea22844058c8c2afe92c387a0039f8ed964336584dfd69/brainglobe-workflows-1.1.0.tar.gz (from https://pypi.org/simple/brainglobe-workflows/) (requires-python:>=3.9), version: 1.1.0 2024-05-16T14:07:31,381 Skipping link: No binaries permitted for brainglobe-workflows: https://files.pythonhosted.org/packages/d4/e7/ce8124540814aceaad9c50c8976531f4e3d9e648ecedf4f5bfe4646b777a/brainglobe_workflows-1.1.0-py3-none-any.whl (from https://pypi.org/simple/brainglobe-workflows/) (requires-python:>=3.9) 2024-05-16T14:07:31,382 Found link https://files.pythonhosted.org/packages/db/a3/fe90d65876b53bee6382de11980cd0dc8897c7a39ac9451e1a85063beb46/brainglobe-workflows-1.1.2.tar.gz (from https://pypi.org/simple/brainglobe-workflows/) (requires-python:>=3.9), version: 1.1.2 2024-05-16T14:07:31,383 Skipping link: No binaries permitted for brainglobe-workflows: https://files.pythonhosted.org/packages/f5/b6/659b4528b8caa5c402c7260961af18f176fecebacc610f812aaf1a792554/brainglobe_workflows-1.1.2-py3-none-any.whl (from https://pypi.org/simple/brainglobe-workflows/) (requires-python:>=3.9) 2024-05-16T14:07:31,384 Found link https://files.pythonhosted.org/packages/cf/32/2cdab745c05ea15e566d43c878311ee978b9bd9c40ce16c91046c832d795/brainglobe-workflows-1.1.3.tar.gz (from https://pypi.org/simple/brainglobe-workflows/) (requires-python:>=3.9), version: 1.1.3 2024-05-16T14:07:31,384 Skipping link: No binaries permitted for brainglobe-workflows: https://files.pythonhosted.org/packages/fb/fa/b5a1d0706cba1ba5aa0363c3e0ec4458ce02b385f18a4aee8e01e57f968c/brainglobe_workflows-1.1.3-py3-none-any.whl (from https://pypi.org/simple/brainglobe-workflows/) (requires-python:>=3.9) 2024-05-16T14:07:31,385 Found link https://files.pythonhosted.org/packages/55/fc/f58b0822072d009b33737a7b81ae97515eea4db6f3cef21f63fb3d7b48df/brainglobe-workflows-1.1.4.tar.gz (from https://pypi.org/simple/brainglobe-workflows/) (requires-python:>=3.9), version: 1.1.4 2024-05-16T14:07:31,386 Skipping link: No binaries permitted for brainglobe-workflows: https://files.pythonhosted.org/packages/88/b2/e9c3a4cf60dfc7e00b20b7eba18419acad78c1146aa47475266310d73ae3/brainglobe_workflows-1.1.4-py3-none-any.whl (from https://pypi.org/simple/brainglobe-workflows/) (requires-python:>=3.9) 2024-05-16T14:07:31,387 Skipping link: No binaries permitted for brainglobe-workflows: https://files.pythonhosted.org/packages/3c/22/6b2ab55ee7005098e528e52079c950d14c2564b7f5a6718d4034974e93f8/brainglobe_workflows-1.1.5-py3-none-any.whl (from https://pypi.org/simple/brainglobe-workflows/) (requires-python:>=3.9) 2024-05-16T14:07:31,388 Found link https://files.pythonhosted.org/packages/d9/8f/ec82f41a099d5a50a5b917e0b4a087b195b1ade5a250500fe17428bfb2cf/brainglobe_workflows-1.1.5.tar.gz (from https://pypi.org/simple/brainglobe-workflows/) (requires-python:>=3.9), version: 1.1.5 2024-05-16T14:07:31,389 Skipping link: No binaries permitted for brainglobe-workflows: https://files.pythonhosted.org/packages/4f/aa/1fcf307a08e29e9bab9486ad173b6f3ed8aea547397a774008292919b092/brainglobe_workflows-1.2.0-py3-none-any.whl (from https://pypi.org/simple/brainglobe-workflows/) (requires-python:>=3.9) 2024-05-16T14:07:31,389 Found link https://files.pythonhosted.org/packages/02/f6/5a015290c9eed2debbe1e53f624382e16947ca766efc154d03c145487bc1/brainglobe_workflows-1.2.0.tar.gz (from https://pypi.org/simple/brainglobe-workflows/) (requires-python:>=3.9), version: 1.2.0 2024-05-16T14:07:31,390 Fetching project page and analyzing links: https://www.piwheels.org/simple/brainglobe-workflows/ 2024-05-16T14:07:31,391 Getting page https://www.piwheels.org/simple/brainglobe-workflows/ 2024-05-16T14:07:31,392 Found index url https://www.piwheels.org/simple/ 2024-05-16T14:07:31,544 Fetched page https://www.piwheels.org/simple/brainglobe-workflows/ as text/html 2024-05-16T14:07:31,547 Skipping link: No binaries permitted for brainglobe-workflows: https://www.piwheels.org/simple/brainglobe-workflows/brainglobe_workflows-1.1.5-py3-none-any.whl#sha256=46143420cf6a1c1a1498c0abbbf2e99cc2ea9ed0775449c490621bf070e8416b (from https://www.piwheels.org/simple/brainglobe-workflows/) (requires-python:>=3.9) 2024-05-16T14:07:31,547 Skipping link: No binaries permitted for brainglobe-workflows: https://www.piwheels.org/simple/brainglobe-workflows/brainglobe_workflows-1.1.4-py3-none-any.whl#sha256=a40f137b87cc1cc9a28e64d115e63647f648c9a068336e13ac730697ca7b443b (from https://www.piwheels.org/simple/brainglobe-workflows/) (requires-python:>=3.9) 2024-05-16T14:07:31,548 Skipping link: No binaries permitted for brainglobe-workflows: https://www.piwheels.org/simple/brainglobe-workflows/brainglobe_workflows-1.1.3-py3-none-any.whl#sha256=4d334ac8e4da3af98e62cf68de8faef80e5bf8d7e115ad7b3bdb881a23552f86 (from https://www.piwheels.org/simple/brainglobe-workflows/) (requires-python:>=3.9) 2024-05-16T14:07:31,549 Skipping link: No binaries permitted for brainglobe-workflows: https://www.piwheels.org/simple/brainglobe-workflows/brainglobe_workflows-1.1.2-py3-none-any.whl#sha256=1e2349b462dae0287a363ad4f5902deee2ba011f684c751d61fa619803f4cf60 (from https://www.piwheels.org/simple/brainglobe-workflows/) (requires-python:>=3.9) 2024-05-16T14:07:31,549 Skipping link: No binaries permitted for brainglobe-workflows: https://www.piwheels.org/simple/brainglobe-workflows/brainglobe_workflows-1.1.0-py3-none-any.whl#sha256=a51e28508b22a8a3a84fbad104aff0ccf7ec652c7c6a612c7d55b80c3d5d5b31 (from https://www.piwheels.org/simple/brainglobe-workflows/) (requires-python:>=3.9) 2024-05-16T14:07:31,550 Skipping link: No binaries permitted for brainglobe-workflows: https://www.piwheels.org/simple/brainglobe-workflows/brainglobe_workflows-1.0.0-py3-none-any.whl#sha256=9875e2cf8c7d6256d90d8026fec7102f19d325dd8480202f52100052a04dfcaf (from https://www.piwheels.org/simple/brainglobe-workflows/) (requires-python:>=3.9) 2024-05-16T14:07:31,551 Skipping link: not a file: https://www.piwheels.org/simple/brainglobe-workflows/ 2024-05-16T14:07:31,551 Skipping link: not a file: https://pypi.org/simple/brainglobe-workflows/ 2024-05-16T14:07:31,570 Given no hashes to check 1 links for project 'brainglobe-workflows': discarding no candidates 2024-05-16T14:07:31,588 Collecting brainglobe-workflows==1.2.0 2024-05-16T14:07:31,591 Created temporary directory: /tmp/pip-unpack-s6uo_ozw 2024-05-16T14:07:31,801 Downloading brainglobe_workflows-1.2.0.tar.gz (24 kB) 2024-05-16T14:07:31,885 Added brainglobe-workflows==1.2.0 from https://files.pythonhosted.org/packages/02/f6/5a015290c9eed2debbe1e53f624382e16947ca766efc154d03c145487bc1/brainglobe_workflows-1.2.0.tar.gz to build tracker '/tmp/pip-build-tracker-zyw_vdrz' 2024-05-16T14:07:31,893 Created temporary directory: /tmp/pip-build-env-6l14e2d2 2024-05-16T14:07:31,899 Installing build dependencies: started 2024-05-16T14:07:31,900 Running command pip subprocess to install build dependencies 2024-05-16T14:07:33,026 Using pip 24.0 from /usr/local/lib/python3.11/dist-packages/pip (python 3.11) 2024-05-16T14:07:33,534 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2024-05-16T14:07:35,038 Collecting setuptools>=45 2024-05-16T14:07:35,054 Using cached https://www.piwheels.org/simple/setuptools/setuptools-69.5.1-py3-none-any.whl (894 kB) 2024-05-16T14:07:35,277 Collecting wheel 2024-05-16T14:07:35,290 Using cached https://www.piwheels.org/simple/wheel/wheel-0.43.0-py3-none-any.whl (65 kB) 2024-05-16T14:07:35,572 Collecting setuptools_scm>=6.2 (from setuptools_scm[toml]>=6.2) 2024-05-16T14:07:35,588 Using cached https://www.piwheels.org/simple/setuptools-scm/setuptools_scm-8.1.0-py3-none-any.whl (43 kB) 2024-05-16T14:07:35,936 Collecting packaging>=20 (from setuptools_scm>=6.2->setuptools_scm[toml]>=6.2) 2024-05-16T14:07:35,951 Using cached https://www.piwheels.org/simple/packaging/packaging-24.0-py3-none-any.whl (53 kB) 2024-05-16T14:07:38,523 Installing collected packages: wheel, setuptools, packaging, setuptools_scm 2024-05-16T14:07:38,746 Creating /tmp/pip-build-env-6l14e2d2/overlay/local/bin 2024-05-16T14:07:38,747 changing mode of /tmp/pip-build-env-6l14e2d2/overlay/local/bin/wheel to 755 2024-05-16T14:07:41,568 Successfully installed packaging-24.0 setuptools-69.5.1 setuptools_scm-8.1.0 wheel-0.43.0 2024-05-16T14:07:42,089 Installing build dependencies: finished with status 'done' 2024-05-16T14:07:42,092 Getting requirements to build wheel: started 2024-05-16T14:07:42,094 Running command Getting requirements to build wheel 2024-05-16T14:07:43,024 running egg_info 2024-05-16T14:07:43,030 writing brainglobe_workflows.egg-info/PKG-INFO 2024-05-16T14:07:43,037 writing dependency_links to brainglobe_workflows.egg-info/dependency_links.txt 2024-05-16T14:07:43,039 writing entry points to brainglobe_workflows.egg-info/entry_points.txt 2024-05-16T14:07:43,043 writing requirements to brainglobe_workflows.egg-info/requires.txt 2024-05-16T14:07:43,045 writing top-level names to brainglobe_workflows.egg-info/top_level.txt 2024-05-16T14:07:43,081 ERROR setuptools_scm._file_finders.git listing git files failed - pretending there aren't any 2024-05-16T14:07:43,085 reading manifest file 'brainglobe_workflows.egg-info/SOURCES.txt' 2024-05-16T14:07:43,087 reading manifest template 'MANIFEST.in' 2024-05-16T14:07:43,089 warning: no previously-included files found matching '.pre-commit-config.yaml' 2024-05-16T14:07:43,090 warning: no previously-included files found matching '*.yaml' 2024-05-16T14:07:43,090 warning: no previously-included files found matching '*.yml' 2024-05-16T14:07:43,091 warning: no previously-included files found matching 'Dockerfile' 2024-05-16T14:07:43,091 warning: no previously-included files found matching '*.ini' 2024-05-16T14:07:43,098 warning: no previously-included files matching '__pycache__' found under directory '*' 2024-05-16T14:07:43,098 warning: no previously-included files matching '*.py[co]' found under directory '*' 2024-05-16T14:07:43,102 warning: no files found matching '*.pxd' anywhere in distribution 2024-05-16T14:07:43,103 no previously-included directories found matching 'docs' 2024-05-16T14:07:43,103 no previously-included directories found matching 'tests' 2024-05-16T14:07:43,104 no previously-included directories found matching 'resources' 2024-05-16T14:07:43,105 no previously-included directories found matching 'benchmarks' 2024-05-16T14:07:43,106 no previously-included directories found matching '.github' 2024-05-16T14:07:43,106 no previously-included directories found matching '.tox' 2024-05-16T14:07:43,107 adding license file 'LICENSE' 2024-05-16T14:07:43,108 writing manifest file 'brainglobe_workflows.egg-info/SOURCES.txt' 2024-05-16T14:07:43,234 Getting requirements to build wheel: finished with status 'done' 2024-05-16T14:07:43,245 Created temporary directory: /tmp/pip-modern-metadata-7xfe_e25 2024-05-16T14:07:43,247 Preparing metadata (pyproject.toml): started 2024-05-16T14:07:43,248 Running command Preparing metadata (pyproject.toml) 2024-05-16T14:07:44,093 running dist_info 2024-05-16T14:07:44,099 creating /tmp/pip-modern-metadata-7xfe_e25/brainglobe_workflows.egg-info 2024-05-16T14:07:44,104 writing /tmp/pip-modern-metadata-7xfe_e25/brainglobe_workflows.egg-info/PKG-INFO 2024-05-16T14:07:44,112 writing dependency_links to /tmp/pip-modern-metadata-7xfe_e25/brainglobe_workflows.egg-info/dependency_links.txt 2024-05-16T14:07:44,114 writing entry points to /tmp/pip-modern-metadata-7xfe_e25/brainglobe_workflows.egg-info/entry_points.txt 2024-05-16T14:07:44,118 writing requirements to /tmp/pip-modern-metadata-7xfe_e25/brainglobe_workflows.egg-info/requires.txt 2024-05-16T14:07:44,119 writing top-level names to /tmp/pip-modern-metadata-7xfe_e25/brainglobe_workflows.egg-info/top_level.txt 2024-05-16T14:07:44,120 writing manifest file '/tmp/pip-modern-metadata-7xfe_e25/brainglobe_workflows.egg-info/SOURCES.txt' 2024-05-16T14:07:44,153 ERROR setuptools_scm._file_finders.git listing git files failed - pretending there aren't any 2024-05-16T14:07:44,156 reading manifest file '/tmp/pip-modern-metadata-7xfe_e25/brainglobe_workflows.egg-info/SOURCES.txt' 2024-05-16T14:07:44,158 reading manifest template 'MANIFEST.in' 2024-05-16T14:07:44,160 warning: no previously-included files found matching '.pre-commit-config.yaml' 2024-05-16T14:07:44,161 warning: no previously-included files found matching '*.yaml' 2024-05-16T14:07:44,161 warning: no previously-included files found matching '*.yml' 2024-05-16T14:07:44,162 warning: no previously-included files found matching 'Dockerfile' 2024-05-16T14:07:44,163 warning: no previously-included files found matching '*.ini' 2024-05-16T14:07:44,169 warning: no previously-included files matching '__pycache__' found under directory '*' 2024-05-16T14:07:44,170 warning: no previously-included files matching '*.py[co]' found under directory '*' 2024-05-16T14:07:44,174 warning: no files found matching '*.pxd' anywhere in distribution 2024-05-16T14:07:44,174 no previously-included directories found matching 'docs' 2024-05-16T14:07:44,175 no previously-included directories found matching 'tests' 2024-05-16T14:07:44,176 no previously-included directories found matching 'resources' 2024-05-16T14:07:44,176 no previously-included directories found matching 'benchmarks' 2024-05-16T14:07:44,177 no previously-included directories found matching '.github' 2024-05-16T14:07:44,177 no previously-included directories found matching '.tox' 2024-05-16T14:07:44,178 adding license file 'LICENSE' 2024-05-16T14:07:44,180 writing manifest file '/tmp/pip-modern-metadata-7xfe_e25/brainglobe_workflows.egg-info/SOURCES.txt' 2024-05-16T14:07:44,181 creating '/tmp/pip-modern-metadata-7xfe_e25/brainglobe_workflows-1.2.0.dist-info' 2024-05-16T14:07:44,350 Preparing metadata (pyproject.toml): finished with status 'done' 2024-05-16T14:07:44,356 Source in /tmp/pip-wheel-cq_yzdhj/brainglobe-workflows_70a51fb49254431280f32c1d6b2f1c47 has version 1.2.0, which satisfies requirement brainglobe-workflows==1.2.0 from https://files.pythonhosted.org/packages/02/f6/5a015290c9eed2debbe1e53f624382e16947ca766efc154d03c145487bc1/brainglobe_workflows-1.2.0.tar.gz 2024-05-16T14:07:44,357 Removed brainglobe-workflows==1.2.0 from https://files.pythonhosted.org/packages/02/f6/5a015290c9eed2debbe1e53f624382e16947ca766efc154d03c145487bc1/brainglobe_workflows-1.2.0.tar.gz from build tracker '/tmp/pip-build-tracker-zyw_vdrz' 2024-05-16T14:07:44,363 Created temporary directory: /tmp/pip-unpack-dfkgw7yd 2024-05-16T14:07:44,365 Created temporary directory: /tmp/pip-unpack-_sjs9x7g 2024-05-16T14:07:44,415 Building wheels for collected packages: brainglobe-workflows 2024-05-16T14:07:44,418 Created temporary directory: /tmp/pip-wheel-73qk1ga1 2024-05-16T14:07:44,419 Destination directory: /tmp/pip-wheel-73qk1ga1 2024-05-16T14:07:44,421 Building wheel for brainglobe-workflows (pyproject.toml): started 2024-05-16T14:07:44,422 Running command Building wheel for brainglobe-workflows (pyproject.toml) 2024-05-16T14:07:45,242 running bdist_wheel 2024-05-16T14:07:45,263 running build 2024-05-16T14:07:45,264 running build_py 2024-05-16T14:07:45,269 creating build 2024-05-16T14:07:45,270 creating build/lib 2024-05-16T14:07:45,270 creating build/lib/brainglobe_workflows 2024-05-16T14:07:45,272 copying brainglobe_workflows/utils.py -> build/lib/brainglobe_workflows 2024-05-16T14:07:45,274 copying brainglobe_workflows/__init__.py -> build/lib/brainglobe_workflows 2024-05-16T14:07:45,275 running egg_info 2024-05-16T14:07:45,279 writing brainglobe_workflows.egg-info/PKG-INFO 2024-05-16T14:07:45,286 writing dependency_links to brainglobe_workflows.egg-info/dependency_links.txt 2024-05-16T14:07:45,288 writing entry points to brainglobe_workflows.egg-info/entry_points.txt 2024-05-16T14:07:45,291 writing requirements to brainglobe_workflows.egg-info/requires.txt 2024-05-16T14:07:45,292 writing top-level names to brainglobe_workflows.egg-info/top_level.txt 2024-05-16T14:07:45,320 ERROR setuptools_scm._file_finders.git listing git files failed - pretending there aren't any 2024-05-16T14:07:45,322 reading manifest file 'brainglobe_workflows.egg-info/SOURCES.txt' 2024-05-16T14:07:45,325 reading manifest template 'MANIFEST.in' 2024-05-16T14:07:45,326 warning: no previously-included files found matching '.pre-commit-config.yaml' 2024-05-16T14:07:45,327 warning: no previously-included files found matching '*.yaml' 2024-05-16T14:07:45,327 warning: no previously-included files found matching '*.yml' 2024-05-16T14:07:45,328 warning: no previously-included files found matching 'Dockerfile' 2024-05-16T14:07:45,329 warning: no previously-included files found matching '*.ini' 2024-05-16T14:07:45,335 warning: no previously-included files matching '__pycache__' found under directory '*' 2024-05-16T14:07:45,336 warning: no previously-included files matching '*.py[co]' found under directory '*' 2024-05-16T14:07:45,341 warning: no files found matching '*.pxd' anywhere in distribution 2024-05-16T14:07:45,341 no previously-included directories found matching 'docs' 2024-05-16T14:07:45,342 no previously-included directories found matching 'tests' 2024-05-16T14:07:45,343 no previously-included directories found matching 'resources' 2024-05-16T14:07:45,343 no previously-included directories found matching 'benchmarks' 2024-05-16T14:07:45,344 no previously-included directories found matching '.github' 2024-05-16T14:07:45,344 no previously-included directories found matching '.tox' 2024-05-16T14:07:45,345 adding license file 'LICENSE' 2024-05-16T14:07:45,346 writing manifest file 'brainglobe_workflows.egg-info/SOURCES.txt' 2024-05-16T14:07:45,348 /tmp/pip-build-env-6l14e2d2/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'brainglobe_workflows.brainmapper' is absent from the `packages` configuration. 2024-05-16T14:07:45,349 !! 2024-05-16T14:07:45,350 ******************************************************************************** 2024-05-16T14:07:45,351 ############################ 2024-05-16T14:07:45,351 # Package would be ignored # 2024-05-16T14:07:45,352 ############################ 2024-05-16T14:07:45,353 Python recognizes 'brainglobe_workflows.brainmapper' as an importable package[^1], 2024-05-16T14:07:45,353 but it is absent from setuptools' `packages` configuration. 2024-05-16T14:07:45,354 This leads to an ambiguous overall configuration. If you want to distribute this 2024-05-16T14:07:45,355 package, please make sure that 'brainglobe_workflows.brainmapper' is explicitly added 2024-05-16T14:07:45,355 to the `packages` configuration field. 2024-05-16T14:07:45,356 Alternatively, you can also rely on setuptools' discovery methods 2024-05-16T14:07:45,356 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-05-16T14:07:45,357 instead of `find_packages(...)`/`find:`). 2024-05-16T14:07:45,358 You can read more about "package discovery" on setuptools documentation page: 2024-05-16T14:07:45,359 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-05-16T14:07:45,360 If you don't want 'brainglobe_workflows.brainmapper' to be distributed and are 2024-05-16T14:07:45,360 already explicitly excluding 'brainglobe_workflows.brainmapper' via 2024-05-16T14:07:45,361 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-05-16T14:07:45,361 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-05-16T14:07:45,362 combination with a more fine grained `package-data` configuration. 2024-05-16T14:07:45,363 You can read more about "package data files" on setuptools documentation page: 2024-05-16T14:07:45,364 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-05-16T14:07:45,365 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-05-16T14:07:45,366 even if it does not contain any `.py` files. 2024-05-16T14:07:45,366 On the other hand, currently there is no concept of package data 2024-05-16T14:07:45,367 directory, all directories are treated like packages. 2024-05-16T14:07:45,367 ******************************************************************************** 2024-05-16T14:07:45,368 !! 2024-05-16T14:07:45,369 check.warn(importable) 2024-05-16T14:07:45,369 /tmp/pip-build-env-6l14e2d2/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'brainglobe_workflows.cellfinder' is absent from the `packages` configuration. 2024-05-16T14:07:45,370 !! 2024-05-16T14:07:45,371 ******************************************************************************** 2024-05-16T14:07:45,371 ############################ 2024-05-16T14:07:45,372 # Package would be ignored # 2024-05-16T14:07:45,373 ############################ 2024-05-16T14:07:45,373 Python recognizes 'brainglobe_workflows.cellfinder' as an importable package[^1], 2024-05-16T14:07:45,374 but it is absent from setuptools' `packages` configuration. 2024-05-16T14:07:45,375 This leads to an ambiguous overall configuration. If you want to distribute this 2024-05-16T14:07:45,375 package, please make sure that 'brainglobe_workflows.cellfinder' is explicitly added 2024-05-16T14:07:45,376 to the `packages` configuration field. 2024-05-16T14:07:45,377 Alternatively, you can also rely on setuptools' discovery methods 2024-05-16T14:07:45,378 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-05-16T14:07:45,378 instead of `find_packages(...)`/`find:`). 2024-05-16T14:07:45,379 You can read more about "package discovery" on setuptools documentation page: 2024-05-16T14:07:45,380 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-05-16T14:07:45,382 If you don't want 'brainglobe_workflows.cellfinder' to be distributed and are 2024-05-16T14:07:45,382 already explicitly excluding 'brainglobe_workflows.cellfinder' via 2024-05-16T14:07:45,383 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-05-16T14:07:45,383 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-05-16T14:07:45,384 combination with a more fine grained `package-data` configuration. 2024-05-16T14:07:45,385 You can read more about "package data files" on setuptools documentation page: 2024-05-16T14:07:45,386 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-05-16T14:07:45,387 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-05-16T14:07:45,388 even if it does not contain any `.py` files. 2024-05-16T14:07:45,388 On the other hand, currently there is no concept of package data 2024-05-16T14:07:45,388 directory, all directories are treated like packages. 2024-05-16T14:07:45,389 ******************************************************************************** 2024-05-16T14:07:45,389 !! 2024-05-16T14:07:45,390 check.warn(importable) 2024-05-16T14:07:45,390 /tmp/pip-build-env-6l14e2d2/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'brainglobe_workflows.configs' is absent from the `packages` configuration. 2024-05-16T14:07:45,391 !! 2024-05-16T14:07:45,391 ******************************************************************************** 2024-05-16T14:07:45,392 ############################ 2024-05-16T14:07:45,392 # Package would be ignored # 2024-05-16T14:07:45,393 ############################ 2024-05-16T14:07:45,393 Python recognizes 'brainglobe_workflows.configs' as an importable package[^1], 2024-05-16T14:07:45,394 but it is absent from setuptools' `packages` configuration. 2024-05-16T14:07:45,395 This leads to an ambiguous overall configuration. If you want to distribute this 2024-05-16T14:07:45,396 package, please make sure that 'brainglobe_workflows.configs' is explicitly added 2024-05-16T14:07:45,396 to the `packages` configuration field. 2024-05-16T14:07:45,397 Alternatively, you can also rely on setuptools' discovery methods 2024-05-16T14:07:45,398 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-05-16T14:07:45,398 instead of `find_packages(...)`/`find:`). 2024-05-16T14:07:45,400 You can read more about "package discovery" on setuptools documentation page: 2024-05-16T14:07:45,401 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-05-16T14:07:45,402 If you don't want 'brainglobe_workflows.configs' to be distributed and are 2024-05-16T14:07:45,403 already explicitly excluding 'brainglobe_workflows.configs' via 2024-05-16T14:07:45,403 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-05-16T14:07:45,404 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-05-16T14:07:45,404 combination with a more fine grained `package-data` configuration. 2024-05-16T14:07:45,405 You can read more about "package data files" on setuptools documentation page: 2024-05-16T14:07:45,406 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-05-16T14:07:45,408 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-05-16T14:07:45,409 even if it does not contain any `.py` files. 2024-05-16T14:07:45,409 On the other hand, currently there is no concept of package data 2024-05-16T14:07:45,410 directory, all directories are treated like packages. 2024-05-16T14:07:45,410 ******************************************************************************** 2024-05-16T14:07:45,411 !! 2024-05-16T14:07:45,412 check.warn(importable) 2024-05-16T14:07:45,413 creating build/lib/brainglobe_workflows/brainmapper 2024-05-16T14:07:45,413 copying brainglobe_workflows/brainmapper/__init__.py -> build/lib/brainglobe_workflows/brainmapper 2024-05-16T14:07:45,414 copying brainglobe_workflows/brainmapper/analyse.py -> build/lib/brainglobe_workflows/brainmapper 2024-05-16T14:07:45,415 copying brainglobe_workflows/brainmapper/main.py -> build/lib/brainglobe_workflows/brainmapper 2024-05-16T14:07:45,415 copying brainglobe_workflows/brainmapper/parser.py -> build/lib/brainglobe_workflows/brainmapper 2024-05-16T14:07:45,416 copying brainglobe_workflows/brainmapper/prep.py -> build/lib/brainglobe_workflows/brainmapper 2024-05-16T14:07:45,416 creating build/lib/brainglobe_workflows/cellfinder 2024-05-16T14:07:45,416 copying brainglobe_workflows/cellfinder/__init__.py -> build/lib/brainglobe_workflows/cellfinder 2024-05-16T14:07:45,417 copying brainglobe_workflows/cellfinder/cellfinder.py -> build/lib/brainglobe_workflows/cellfinder 2024-05-16T14:07:45,417 creating build/lib/brainglobe_workflows/configs 2024-05-16T14:07:45,418 copying brainglobe_workflows/configs/cellfinder.json -> build/lib/brainglobe_workflows/configs 2024-05-16T14:07:45,418 installing to build/bdist.linux-armv7l/wheel 2024-05-16T14:07:45,419 running install 2024-05-16T14:07:45,419 running install_lib 2024-05-16T14:07:45,420 creating build/bdist.linux-armv7l 2024-05-16T14:07:45,420 creating build/bdist.linux-armv7l/wheel 2024-05-16T14:07:45,421 creating build/bdist.linux-armv7l/wheel/brainglobe_workflows 2024-05-16T14:07:45,422 creating build/bdist.linux-armv7l/wheel/brainglobe_workflows/brainmapper 2024-05-16T14:07:45,423 copying build/lib/brainglobe_workflows/brainmapper/main.py -> build/bdist.linux-armv7l/wheel/brainglobe_workflows/brainmapper 2024-05-16T14:07:45,425 copying build/lib/brainglobe_workflows/brainmapper/parser.py -> build/bdist.linux-armv7l/wheel/brainglobe_workflows/brainmapper 2024-05-16T14:07:45,428 copying build/lib/brainglobe_workflows/brainmapper/prep.py -> build/bdist.linux-armv7l/wheel/brainglobe_workflows/brainmapper 2024-05-16T14:07:45,430 copying build/lib/brainglobe_workflows/brainmapper/analyse.py -> build/bdist.linux-armv7l/wheel/brainglobe_workflows/brainmapper 2024-05-16T14:07:45,431 copying build/lib/brainglobe_workflows/brainmapper/__init__.py -> build/bdist.linux-armv7l/wheel/brainglobe_workflows/brainmapper 2024-05-16T14:07:45,433 creating build/bdist.linux-armv7l/wheel/brainglobe_workflows/configs 2024-05-16T14:07:45,434 copying build/lib/brainglobe_workflows/configs/cellfinder.json -> build/bdist.linux-armv7l/wheel/brainglobe_workflows/configs 2024-05-16T14:07:45,436 copying build/lib/brainglobe_workflows/utils.py -> build/bdist.linux-armv7l/wheel/brainglobe_workflows 2024-05-16T14:07:45,438 creating build/bdist.linux-armv7l/wheel/brainglobe_workflows/cellfinder 2024-05-16T14:07:45,439 copying build/lib/brainglobe_workflows/cellfinder/cellfinder.py -> build/bdist.linux-armv7l/wheel/brainglobe_workflows/cellfinder 2024-05-16T14:07:45,442 copying build/lib/brainglobe_workflows/cellfinder/__init__.py -> build/bdist.linux-armv7l/wheel/brainglobe_workflows/cellfinder 2024-05-16T14:07:45,443 copying build/lib/brainglobe_workflows/__init__.py -> build/bdist.linux-armv7l/wheel/brainglobe_workflows 2024-05-16T14:07:45,445 running install_egg_info 2024-05-16T14:07:45,450 Copying brainglobe_workflows.egg-info to build/bdist.linux-armv7l/wheel/brainglobe_workflows-1.2.0-py3.11.egg-info 2024-05-16T14:07:45,463 running install_scripts 2024-05-16T14:07:45,484 creating build/bdist.linux-armv7l/wheel/brainglobe_workflows-1.2.0.dist-info/WHEEL 2024-05-16T14:07:45,486 creating '/tmp/pip-wheel-73qk1ga1/.tmp-ydb_rloi/brainglobe_workflows-1.2.0-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2024-05-16T14:07:45,488 adding 'brainglobe_workflows/__init__.py' 2024-05-16T14:07:45,490 adding 'brainglobe_workflows/utils.py' 2024-05-16T14:07:45,492 adding 'brainglobe_workflows/brainmapper/__init__.py' 2024-05-16T14:07:45,493 adding 'brainglobe_workflows/brainmapper/analyse.py' 2024-05-16T14:07:45,495 adding 'brainglobe_workflows/brainmapper/main.py' 2024-05-16T14:07:45,497 adding 'brainglobe_workflows/brainmapper/parser.py' 2024-05-16T14:07:45,499 adding 'brainglobe_workflows/brainmapper/prep.py' 2024-05-16T14:07:45,501 adding 'brainglobe_workflows/cellfinder/__init__.py' 2024-05-16T14:07:45,503 adding 'brainglobe_workflows/cellfinder/cellfinder.py' 2024-05-16T14:07:45,505 adding 'brainglobe_workflows/configs/cellfinder.json' 2024-05-16T14:07:45,507 adding 'brainglobe_workflows-1.2.0.dist-info/LICENSE' 2024-05-16T14:07:45,509 adding 'brainglobe_workflows-1.2.0.dist-info/METADATA' 2024-05-16T14:07:45,510 adding 'brainglobe_workflows-1.2.0.dist-info/WHEEL' 2024-05-16T14:07:45,511 adding 'brainglobe_workflows-1.2.0.dist-info/entry_points.txt' 2024-05-16T14:07:45,511 adding 'brainglobe_workflows-1.2.0.dist-info/top_level.txt' 2024-05-16T14:07:45,512 adding 'brainglobe_workflows-1.2.0.dist-info/RECORD' 2024-05-16T14:07:45,514 removing build/bdist.linux-armv7l/wheel 2024-05-16T14:07:45,647 Building wheel for brainglobe-workflows (pyproject.toml): finished with status 'done' 2024-05-16T14:07:45,651 Created wheel for brainglobe-workflows: filename=brainglobe_workflows-1.2.0-py3-none-any.whl size=22961 sha256=c282af0bcc660b765325b72565a77efadad906fb78b642aedc6de28dc587fcb7 2024-05-16T14:07:45,653 Stored in directory: /tmp/pip-ephem-wheel-cache-mj9ik82z/wheels/8e/04/7e/8a1452c5afe243b512c11b0220dcb3d9a8108b80f209ed022c 2024-05-16T14:07:45,665 Successfully built brainglobe-workflows 2024-05-16T14:07:45,669 Removed build tracker: '/tmp/pip-build-tracker-zyw_vdrz'