2024-05-17T10:32:51,168 Created temporary directory: /tmp/pip-build-tracker-9ygrhm0a 2024-05-17T10:32:51,169 Initialized build tracking at /tmp/pip-build-tracker-9ygrhm0a 2024-05-17T10:32:51,169 Created build tracker: /tmp/pip-build-tracker-9ygrhm0a 2024-05-17T10:32:51,170 Entered build tracker: /tmp/pip-build-tracker-9ygrhm0a 2024-05-17T10:32:51,171 Created temporary directory: /tmp/pip-wheel-on0lr6w4 2024-05-17T10:32:51,174 Created temporary directory: /tmp/pip-ephem-wheel-cache-mryjtxft 2024-05-17T10:32:51,199 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2024-05-17T10:32:51,202 2 location(s) to search for versions of funvip: 2024-05-17T10:32:51,202 * https://pypi.org/simple/funvip/ 2024-05-17T10:32:51,202 * https://www.piwheels.org/simple/funvip/ 2024-05-17T10:32:51,203 Fetching project page and analyzing links: https://pypi.org/simple/funvip/ 2024-05-17T10:32:51,204 Getting page https://pypi.org/simple/funvip/ 2024-05-17T10:32:51,205 Found index url https://pypi.org/simple/ 2024-05-17T10:32:51,420 Fetched page https://pypi.org/simple/funvip/ as application/vnd.pypi.simple.v1+json 2024-05-17T10:32:51,422 Skipping link: No binaries permitted for funvip: https://files.pythonhosted.org/packages/a0/b5/0d65eb17b155c93a7022978aa4521fa29d234a099409863a5b08a8e7e122/FunVIP-0.3.20-py3-none-any.whl (from https://pypi.org/simple/funvip/) (requires-python:<3.13,>3.8) 2024-05-17T10:32:51,423 Found link https://files.pythonhosted.org/packages/9b/df/34c36f5642250c040b8ef6fd2f6c11699fe52dca76ef2697e566a4101185/funvip-0.3.20.tar.gz (from https://pypi.org/simple/funvip/) (requires-python:<3.13,>3.8), version: 0.3.20 2024-05-17T10:32:51,424 Skipping link: No binaries permitted for funvip: https://files.pythonhosted.org/packages/fe/66/8319c3a6cd421da1f2a7febf8bc5042089d0f7480d31d988b9dc02b348cc/FunVIP-0.3.21-py3-none-any.whl (from https://pypi.org/simple/funvip/) (requires-python:<3.13,>3.8) 2024-05-17T10:32:51,425 Found link https://files.pythonhosted.org/packages/15/a7/1458c95468d22392f0d1f5366422c5e3325b2b73fb00ead5645ce60aefd3/funvip-0.3.21.tar.gz (from https://pypi.org/simple/funvip/) (requires-python:<3.13,>3.8), version: 0.3.21 2024-05-17T10:32:51,426 Fetching project page and analyzing links: https://www.piwheels.org/simple/funvip/ 2024-05-17T10:32:51,426 Getting page https://www.piwheels.org/simple/funvip/ 2024-05-17T10:32:51,427 Found index url https://www.piwheels.org/simple/ 2024-05-17T10:32:51,777 Fetched page https://www.piwheels.org/simple/funvip/ as text/html 2024-05-17T10:32:51,778 Skipping link: No binaries permitted for funvip: https://www.piwheels.org/simple/funvip/FunVIP-0.3.20-py3-none-any.whl#sha256=c93795ba7644b586c23cea4f5a6c421915b36ff5f5be700ee1a37d7857f03e3b (from https://www.piwheels.org/simple/funvip/) (requires-python:<3.13,>3.8) 2024-05-17T10:32:51,779 Skipping link: not a file: https://www.piwheels.org/simple/funvip/ 2024-05-17T10:32:51,779 Skipping link: not a file: https://pypi.org/simple/funvip/ 2024-05-17T10:32:51,798 Given no hashes to check 1 links for project 'funvip': discarding no candidates 2024-05-17T10:32:51,816 Collecting funvip==0.3.21 2024-05-17T10:32:51,819 Created temporary directory: /tmp/pip-unpack-8f4br66g 2024-05-17T10:32:52,047 Downloading funvip-0.3.21.tar.gz (59.4 MB) 2024-05-17T10:33:09,631 Added funvip==0.3.21 from https://files.pythonhosted.org/packages/15/a7/1458c95468d22392f0d1f5366422c5e3325b2b73fb00ead5645ce60aefd3/funvip-0.3.21.tar.gz to build tracker '/tmp/pip-build-tracker-9ygrhm0a' 2024-05-17T10:33:09,637 Created temporary directory: /tmp/pip-build-env-y_3wcfzt 2024-05-17T10:33:09,642 Installing build dependencies: started 2024-05-17T10:33:09,643 Running command pip subprocess to install build dependencies 2024-05-17T10:33:10,781 Using pip 24.0 from /usr/local/lib/python3.11/dist-packages/pip (python 3.11) 2024-05-17T10:33:11,260 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2024-05-17T10:33:12,899 Collecting setuptools 2024-05-17T10:33:12,917 Using cached https://www.piwheels.org/simple/setuptools/setuptools-69.5.1-py3-none-any.whl (894 kB) 2024-05-17T10:33:13,046 Collecting setuptools-ext 2024-05-17T10:33:13,061 Using cached https://www.piwheels.org/simple/setuptools-ext/setuptools_ext-0.9-py3-none-any.whl (7.2 kB) 2024-05-17T10:33:13,258 Collecting wheel 2024-05-17T10:33:13,276 Using cached https://www.piwheels.org/simple/wheel/wheel-0.43.0-py3-none-any.whl (65 kB) 2024-05-17T10:33:16,141 Installing collected packages: wheel, setuptools, setuptools-ext 2024-05-17T10:33:16,374 Creating /tmp/pip-build-env-y_3wcfzt/overlay/local/bin 2024-05-17T10:33:16,376 changing mode of /tmp/pip-build-env-y_3wcfzt/overlay/local/bin/wheel to 755 2024-05-17T10:33:18,906 Successfully installed setuptools-69.5.1 setuptools-ext-0.9 wheel-0.43.0 2024-05-17T10:33:19,424 Installing build dependencies: finished with status 'done' 2024-05-17T10:33:19,427 Getting requirements to build wheel: started 2024-05-17T10:33:19,428 Running command Getting requirements to build wheel 2024-05-17T10:33:20,322 running egg_info 2024-05-17T10:33:20,327 writing FunVIP.egg-info/PKG-INFO 2024-05-17T10:33:20,331 writing dependency_links to FunVIP.egg-info/dependency_links.txt 2024-05-17T10:33:20,333 writing entry points to FunVIP.egg-info/entry_points.txt 2024-05-17T10:33:20,335 writing requirements to FunVIP.egg-info/requires.txt 2024-05-17T10:33:20,336 writing top-level names to FunVIP.egg-info/top_level.txt 2024-05-17T10:33:20,352 reading manifest file 'FunVIP.egg-info/SOURCES.txt' 2024-05-17T10:33:20,365 adding license file 'LICENSE' 2024-05-17T10:33:20,373 writing manifest file 'FunVIP.egg-info/SOURCES.txt' 2024-05-17T10:33:20,493 Getting requirements to build wheel: finished with status 'done' 2024-05-17T10:33:20,504 Created temporary directory: /tmp/pip-modern-metadata-1u3_0499 2024-05-17T10:33:20,506 Preparing metadata (pyproject.toml): started 2024-05-17T10:33:20,507 Running command Preparing metadata (pyproject.toml) 2024-05-17T10:33:21,292 running dist_info 2024-05-17T10:33:21,297 creating /tmp/pip-modern-metadata-1u3_0499/FunVIP.egg-info 2024-05-17T10:33:21,302 writing /tmp/pip-modern-metadata-1u3_0499/FunVIP.egg-info/PKG-INFO 2024-05-17T10:33:21,306 writing dependency_links to /tmp/pip-modern-metadata-1u3_0499/FunVIP.egg-info/dependency_links.txt 2024-05-17T10:33:21,308 writing entry points to /tmp/pip-modern-metadata-1u3_0499/FunVIP.egg-info/entry_points.txt 2024-05-17T10:33:21,311 writing requirements to /tmp/pip-modern-metadata-1u3_0499/FunVIP.egg-info/requires.txt 2024-05-17T10:33:21,312 writing top-level names to /tmp/pip-modern-metadata-1u3_0499/FunVIP.egg-info/top_level.txt 2024-05-17T10:33:21,314 writing manifest file '/tmp/pip-modern-metadata-1u3_0499/FunVIP.egg-info/SOURCES.txt' 2024-05-17T10:33:21,328 reading manifest file '/tmp/pip-modern-metadata-1u3_0499/FunVIP.egg-info/SOURCES.txt' 2024-05-17T10:33:21,330 adding license file 'LICENSE' 2024-05-17T10:33:21,332 writing manifest file '/tmp/pip-modern-metadata-1u3_0499/FunVIP.egg-info/SOURCES.txt' 2024-05-17T10:33:21,333 creating '/tmp/pip-modern-metadata-1u3_0499/FunVIP-0.3.21.dist-info' 2024-05-17T10:33:21,489 Preparing metadata (pyproject.toml): finished with status 'done' 2024-05-17T10:33:21,494 Source in /tmp/pip-wheel-on0lr6w4/funvip_310edf3d64a24a3ead5696193d1e4d8c has version 0.3.21, which satisfies requirement funvip==0.3.21 from https://files.pythonhosted.org/packages/15/a7/1458c95468d22392f0d1f5366422c5e3325b2b73fb00ead5645ce60aefd3/funvip-0.3.21.tar.gz 2024-05-17T10:33:21,495 Removed funvip==0.3.21 from https://files.pythonhosted.org/packages/15/a7/1458c95468d22392f0d1f5366422c5e3325b2b73fb00ead5645ce60aefd3/funvip-0.3.21.tar.gz from build tracker '/tmp/pip-build-tracker-9ygrhm0a' 2024-05-17T10:33:21,500 Created temporary directory: /tmp/pip-unpack-dv464lzt 2024-05-17T10:33:21,501 Created temporary directory: /tmp/pip-unpack-27x6mn9s 2024-05-17T10:33:21,529 Building wheels for collected packages: funvip 2024-05-17T10:33:21,534 Created temporary directory: /tmp/pip-wheel-r8a8upql 2024-05-17T10:33:21,534 Destination directory: /tmp/pip-wheel-r8a8upql 2024-05-17T10:33:21,536 Building wheel for funvip (pyproject.toml): started 2024-05-17T10:33:21,538 Running command Building wheel for funvip (pyproject.toml) 2024-05-17T10:33:22,303 running bdist_wheel 2024-05-17T10:33:22,319 running build 2024-05-17T10:33:22,320 running build_py 2024-05-17T10:33:22,324 creating build 2024-05-17T10:33:22,325 creating build/lib 2024-05-17T10:33:22,326 creating build/lib/funvip 2024-05-17T10:33:22,327 copying funvip/FunVIP_GUI.py -> build/lib/funvip 2024-05-17T10:33:22,329 copying funvip/main.py -> build/lib/funvip 2024-05-17T10:33:22,332 copying funvip/__init__.py -> build/lib/funvip 2024-05-17T10:33:22,333 running egg_info 2024-05-17T10:33:22,336 writing FunVIP.egg-info/PKG-INFO 2024-05-17T10:33:22,340 writing dependency_links to FunVIP.egg-info/dependency_links.txt 2024-05-17T10:33:22,341 writing entry points to FunVIP.egg-info/entry_points.txt 2024-05-17T10:33:22,343 writing requirements to FunVIP.egg-info/requires.txt 2024-05-17T10:33:22,345 writing top-level names to FunVIP.egg-info/top_level.txt 2024-05-17T10:33:22,351 reading manifest file 'FunVIP.egg-info/SOURCES.txt' 2024-05-17T10:33:22,357 adding license file 'LICENSE' 2024-05-17T10:33:22,364 writing manifest file 'FunVIP.egg-info/SOURCES.txt' 2024-05-17T10:33:22,366 /tmp/pip-build-env-y_3wcfzt/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'funvip.data' is absent from the `packages` configuration. 2024-05-17T10:33:22,367 !! 2024-05-17T10:33:22,368 ******************************************************************************** 2024-05-17T10:33:22,368 ############################ 2024-05-17T10:33:22,369 # Package would be ignored # 2024-05-17T10:33:22,369 ############################ 2024-05-17T10:33:22,370 Python recognizes 'funvip.data' as an importable package[^1], 2024-05-17T10:33:22,371 but it is absent from setuptools' `packages` configuration. 2024-05-17T10:33:22,372 This leads to an ambiguous overall configuration. If you want to distribute this 2024-05-17T10:33:22,372 package, please make sure that 'funvip.data' is explicitly added 2024-05-17T10:33:22,373 to the `packages` configuration field. 2024-05-17T10:33:22,374 Alternatively, you can also rely on setuptools' discovery methods 2024-05-17T10:33:22,374 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-05-17T10:33:22,375 instead of `find_packages(...)`/`find:`). 2024-05-17T10:33:22,376 You can read more about "package discovery" on setuptools documentation page: 2024-05-17T10:33:22,377 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-05-17T10:33:22,378 If you don't want 'funvip.data' to be distributed and are 2024-05-17T10:33:22,378 already explicitly excluding 'funvip.data' via 2024-05-17T10:33:22,379 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-05-17T10:33:22,379 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-05-17T10:33:22,380 combination with a more fine grained `package-data` configuration. 2024-05-17T10:33:22,381 You can read more about "package data files" on setuptools documentation page: 2024-05-17T10:33:22,382 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-05-17T10:33:22,383 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-05-17T10:33:22,384 even if it does not contain any `.py` files. 2024-05-17T10:33:22,384 On the other hand, currently there is no concept of package data 2024-05-17T10:33:22,385 directory, all directories are treated like packages. 2024-05-17T10:33:22,385 ******************************************************************************** 2024-05-17T10:33:22,387 !! 2024-05-17T10:33:22,388 check.warn(importable) 2024-05-17T10:33:22,388 /tmp/pip-build-env-y_3wcfzt/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'funvip.external' is absent from the `packages` configuration. 2024-05-17T10:33:22,389 !! 2024-05-17T10:33:22,390 ******************************************************************************** 2024-05-17T10:33:22,390 ############################ 2024-05-17T10:33:22,390 # Package would be ignored # 2024-05-17T10:33:22,391 ############################ 2024-05-17T10:33:22,391 Python recognizes 'funvip.external' as an importable package[^1], 2024-05-17T10:33:22,391 but it is absent from setuptools' `packages` configuration. 2024-05-17T10:33:22,392 This leads to an ambiguous overall configuration. If you want to distribute this 2024-05-17T10:33:22,392 package, please make sure that 'funvip.external' is explicitly added 2024-05-17T10:33:22,393 to the `packages` configuration field. 2024-05-17T10:33:22,393 Alternatively, you can also rely on setuptools' discovery methods 2024-05-17T10:33:22,394 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-05-17T10:33:22,394 instead of `find_packages(...)`/`find:`). 2024-05-17T10:33:22,395 You can read more about "package discovery" on setuptools documentation page: 2024-05-17T10:33:22,396 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-05-17T10:33:22,396 If you don't want 'funvip.external' to be distributed and are 2024-05-17T10:33:22,397 already explicitly excluding 'funvip.external' via 2024-05-17T10:33:22,397 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-05-17T10:33:22,398 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-05-17T10:33:22,398 combination with a more fine grained `package-data` configuration. 2024-05-17T10:33:22,399 You can read more about "package data files" on setuptools documentation page: 2024-05-17T10:33:22,400 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-05-17T10:33:22,401 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-05-17T10:33:22,402 even if it does not contain any `.py` files. 2024-05-17T10:33:22,402 On the other hand, currently there is no concept of package data 2024-05-17T10:33:22,402 directory, all directories are treated like packages. 2024-05-17T10:33:22,403 ******************************************************************************** 2024-05-17T10:33:22,404 !! 2024-05-17T10:33:22,404 check.warn(importable) 2024-05-17T10:33:22,405 /tmp/pip-build-env-y_3wcfzt/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'funvip.external.BLAST_Windows' is absent from the `packages` configuration. 2024-05-17T10:33:22,405 !! 2024-05-17T10:33:22,406 ******************************************************************************** 2024-05-17T10:33:22,406 ############################ 2024-05-17T10:33:22,407 # Package would be ignored # 2024-05-17T10:33:22,407 ############################ 2024-05-17T10:33:22,408 Python recognizes 'funvip.external.BLAST_Windows' as an importable package[^1], 2024-05-17T10:33:22,408 but it is absent from setuptools' `packages` configuration. 2024-05-17T10:33:22,409 This leads to an ambiguous overall configuration. If you want to distribute this 2024-05-17T10:33:22,410 package, please make sure that 'funvip.external.BLAST_Windows' is explicitly added 2024-05-17T10:33:22,410 to the `packages` configuration field. 2024-05-17T10:33:22,411 Alternatively, you can also rely on setuptools' discovery methods 2024-05-17T10:33:22,411 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-05-17T10:33:22,412 instead of `find_packages(...)`/`find:`). 2024-05-17T10:33:22,413 You can read more about "package discovery" on setuptools documentation page: 2024-05-17T10:33:22,414 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-05-17T10:33:22,414 If you don't want 'funvip.external.BLAST_Windows' to be distributed and are 2024-05-17T10:33:22,415 already explicitly excluding 'funvip.external.BLAST_Windows' via 2024-05-17T10:33:22,415 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-05-17T10:33:22,415 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-05-17T10:33:22,416 combination with a more fine grained `package-data` configuration. 2024-05-17T10:33:22,416 You can read more about "package data files" on setuptools documentation page: 2024-05-17T10:33:22,417 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-05-17T10:33:22,418 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-05-17T10:33:22,419 even if it does not contain any `.py` files. 2024-05-17T10:33:22,419 On the other hand, currently there is no concept of package data 2024-05-17T10:33:22,420 directory, all directories are treated like packages. 2024-05-17T10:33:22,420 ******************************************************************************** 2024-05-17T10:33:22,421 !! 2024-05-17T10:33:22,421 check.warn(importable) 2024-05-17T10:33:22,422 /tmp/pip-build-env-y_3wcfzt/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'funvip.external.BLAST_Windows.bin' is absent from the `packages` configuration. 2024-05-17T10:33:22,422 !! 2024-05-17T10:33:22,423 ******************************************************************************** 2024-05-17T10:33:22,423 ############################ 2024-05-17T10:33:22,424 # Package would be ignored # 2024-05-17T10:33:22,424 ############################ 2024-05-17T10:33:22,425 Python recognizes 'funvip.external.BLAST_Windows.bin' as an importable package[^1], 2024-05-17T10:33:22,425 but it is absent from setuptools' `packages` configuration. 2024-05-17T10:33:22,426 This leads to an ambiguous overall configuration. If you want to distribute this 2024-05-17T10:33:22,426 package, please make sure that 'funvip.external.BLAST_Windows.bin' is explicitly added 2024-05-17T10:33:22,427 to the `packages` configuration field. 2024-05-17T10:33:22,428 Alternatively, you can also rely on setuptools' discovery methods 2024-05-17T10:33:22,428 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-05-17T10:33:22,429 instead of `find_packages(...)`/`find:`). 2024-05-17T10:33:22,429 You can read more about "package discovery" on setuptools documentation page: 2024-05-17T10:33:22,430 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-05-17T10:33:22,431 If you don't want 'funvip.external.BLAST_Windows.bin' to be distributed and are 2024-05-17T10:33:22,432 already explicitly excluding 'funvip.external.BLAST_Windows.bin' via 2024-05-17T10:33:22,432 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-05-17T10:33:22,433 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-05-17T10:33:22,433 combination with a more fine grained `package-data` configuration. 2024-05-17T10:33:22,434 You can read more about "package data files" on setuptools documentation page: 2024-05-17T10:33:22,435 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-05-17T10:33:22,436 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-05-17T10:33:22,437 even if it does not contain any `.py` files. 2024-05-17T10:33:22,437 On the other hand, currently there is no concept of package data 2024-05-17T10:33:22,437 directory, all directories are treated like packages. 2024-05-17T10:33:22,438 ******************************************************************************** 2024-05-17T10:33:22,438 !! 2024-05-17T10:33:22,439 check.warn(importable) 2024-05-17T10:33:22,439 /tmp/pip-build-env-y_3wcfzt/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'funvip.external.BLAST_Windows.doc' is absent from the `packages` configuration. 2024-05-17T10:33:22,439 !! 2024-05-17T10:33:22,440 ******************************************************************************** 2024-05-17T10:33:22,440 ############################ 2024-05-17T10:33:22,441 # Package would be ignored # 2024-05-17T10:33:22,441 ############################ 2024-05-17T10:33:22,441 Python recognizes 'funvip.external.BLAST_Windows.doc' as an importable package[^1], 2024-05-17T10:33:22,442 but it is absent from setuptools' `packages` configuration. 2024-05-17T10:33:22,443 This leads to an ambiguous overall configuration. If you want to distribute this 2024-05-17T10:33:22,443 package, please make sure that 'funvip.external.BLAST_Windows.doc' is explicitly added 2024-05-17T10:33:22,443 to the `packages` configuration field. 2024-05-17T10:33:22,444 Alternatively, you can also rely on setuptools' discovery methods 2024-05-17T10:33:22,445 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-05-17T10:33:22,445 instead of `find_packages(...)`/`find:`). 2024-05-17T10:33:22,446 You can read more about "package discovery" on setuptools documentation page: 2024-05-17T10:33:22,447 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-05-17T10:33:22,447 If you don't want 'funvip.external.BLAST_Windows.doc' to be distributed and are 2024-05-17T10:33:22,448 already explicitly excluding 'funvip.external.BLAST_Windows.doc' via 2024-05-17T10:33:22,448 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-05-17T10:33:22,448 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-05-17T10:33:22,449 combination with a more fine grained `package-data` configuration. 2024-05-17T10:33:22,450 You can read more about "package data files" on setuptools documentation page: 2024-05-17T10:33:22,451 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-05-17T10:33:22,452 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-05-17T10:33:22,452 even if it does not contain any `.py` files. 2024-05-17T10:33:22,453 On the other hand, currently there is no concept of package data 2024-05-17T10:33:22,453 directory, all directories are treated like packages. 2024-05-17T10:33:22,454 ******************************************************************************** 2024-05-17T10:33:22,455 !! 2024-05-17T10:33:22,455 check.warn(importable) 2024-05-17T10:33:22,456 /tmp/pip-build-env-y_3wcfzt/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'funvip.external.FastTree_Windows' is absent from the `packages` configuration. 2024-05-17T10:33:22,456 !! 2024-05-17T10:33:22,457 ******************************************************************************** 2024-05-17T10:33:22,458 ############################ 2024-05-17T10:33:22,458 # Package would be ignored # 2024-05-17T10:33:22,459 ############################ 2024-05-17T10:33:22,459 Python recognizes 'funvip.external.FastTree_Windows' as an importable package[^1], 2024-05-17T10:33:22,460 but it is absent from setuptools' `packages` configuration. 2024-05-17T10:33:22,461 This leads to an ambiguous overall configuration. If you want to distribute this 2024-05-17T10:33:22,461 package, please make sure that 'funvip.external.FastTree_Windows' is explicitly added 2024-05-17T10:33:22,461 to the `packages` configuration field. 2024-05-17T10:33:22,462 Alternatively, you can also rely on setuptools' discovery methods 2024-05-17T10:33:22,462 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-05-17T10:33:22,463 instead of `find_packages(...)`/`find:`). 2024-05-17T10:33:22,464 You can read more about "package discovery" on setuptools documentation page: 2024-05-17T10:33:22,465 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-05-17T10:33:22,466 If you don't want 'funvip.external.FastTree_Windows' to be distributed and are 2024-05-17T10:33:22,466 already explicitly excluding 'funvip.external.FastTree_Windows' via 2024-05-17T10:33:22,467 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-05-17T10:33:22,467 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-05-17T10:33:22,468 combination with a more fine grained `package-data` configuration. 2024-05-17T10:33:22,469 You can read more about "package data files" on setuptools documentation page: 2024-05-17T10:33:22,470 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-05-17T10:33:22,471 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-05-17T10:33:22,472 even if it does not contain any `.py` files. 2024-05-17T10:33:22,473 On the other hand, currently there is no concept of package data 2024-05-17T10:33:22,474 directory, all directories are treated like packages. 2024-05-17T10:33:22,474 ******************************************************************************** 2024-05-17T10:33:22,475 !! 2024-05-17T10:33:22,476 check.warn(importable) 2024-05-17T10:33:22,477 /tmp/pip-build-env-y_3wcfzt/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'funvip.external.RAxML_Windows' is absent from the `packages` configuration. 2024-05-17T10:33:22,477 !! 2024-05-17T10:33:22,479 ******************************************************************************** 2024-05-17T10:33:22,480 ############################ 2024-05-17T10:33:22,481 # Package would be ignored # 2024-05-17T10:33:22,482 ############################ 2024-05-17T10:33:22,483 Python recognizes 'funvip.external.RAxML_Windows' as an importable package[^1], 2024-05-17T10:33:22,484 but it is absent from setuptools' `packages` configuration. 2024-05-17T10:33:22,495 This leads to an ambiguous overall configuration. If you want to distribute this 2024-05-17T10:33:22,495 package, please make sure that 'funvip.external.RAxML_Windows' is explicitly added 2024-05-17T10:33:22,496 to the `packages` configuration field. 2024-05-17T10:33:22,497 Alternatively, you can also rely on setuptools' discovery methods 2024-05-17T10:33:22,498 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-05-17T10:33:22,498 instead of `find_packages(...)`/`find:`). 2024-05-17T10:33:22,500 You can read more about "package discovery" on setuptools documentation page: 2024-05-17T10:33:22,501 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-05-17T10:33:22,502 If you don't want 'funvip.external.RAxML_Windows' to be distributed and are 2024-05-17T10:33:22,503 already explicitly excluding 'funvip.external.RAxML_Windows' via 2024-05-17T10:33:22,503 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-05-17T10:33:22,504 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-05-17T10:33:22,505 combination with a more fine grained `package-data` configuration. 2024-05-17T10:33:22,505 You can read more about "package data files" on setuptools documentation page: 2024-05-17T10:33:22,506 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-05-17T10:33:22,507 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-05-17T10:33:22,508 even if it does not contain any `.py` files. 2024-05-17T10:33:22,508 On the other hand, currently there is no concept of package data 2024-05-17T10:33:22,509 directory, all directories are treated like packages. 2024-05-17T10:33:22,509 ******************************************************************************** 2024-05-17T10:33:22,510 !! 2024-05-17T10:33:22,511 check.warn(importable) 2024-05-17T10:33:22,511 /tmp/pip-build-env-y_3wcfzt/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'funvip.external.iqtree' is absent from the `packages` configuration. 2024-05-17T10:33:22,511 !! 2024-05-17T10:33:22,512 ******************************************************************************** 2024-05-17T10:33:22,513 ############################ 2024-05-17T10:33:22,513 # Package would be ignored # 2024-05-17T10:33:22,514 ############################ 2024-05-17T10:33:22,514 Python recognizes 'funvip.external.iqtree' as an importable package[^1], 2024-05-17T10:33:22,515 but it is absent from setuptools' `packages` configuration. 2024-05-17T10:33:22,516 This leads to an ambiguous overall configuration. If you want to distribute this 2024-05-17T10:33:22,516 package, please make sure that 'funvip.external.iqtree' is explicitly added 2024-05-17T10:33:22,517 to the `packages` configuration field. 2024-05-17T10:33:22,518 Alternatively, you can also rely on setuptools' discovery methods 2024-05-17T10:33:22,518 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-05-17T10:33:22,519 instead of `find_packages(...)`/`find:`). 2024-05-17T10:33:22,520 You can read more about "package discovery" on setuptools documentation page: 2024-05-17T10:33:22,521 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-05-17T10:33:22,523 If you don't want 'funvip.external.iqtree' to be distributed and are 2024-05-17T10:33:22,523 already explicitly excluding 'funvip.external.iqtree' via 2024-05-17T10:33:22,524 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-05-17T10:33:22,525 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-05-17T10:33:22,525 combination with a more fine grained `package-data` configuration. 2024-05-17T10:33:22,526 You can read more about "package data files" on setuptools documentation page: 2024-05-17T10:33:22,528 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-05-17T10:33:22,530 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-05-17T10:33:22,530 even if it does not contain any `.py` files. 2024-05-17T10:33:22,531 On the other hand, currently there is no concept of package data 2024-05-17T10:33:22,531 directory, all directories are treated like packages. 2024-05-17T10:33:22,532 ******************************************************************************** 2024-05-17T10:33:22,533 !! 2024-05-17T10:33:22,534 check.warn(importable) 2024-05-17T10:33:22,535 /tmp/pip-build-env-y_3wcfzt/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'funvip.external.iqtree.bin' is absent from the `packages` configuration. 2024-05-17T10:33:22,536 !! 2024-05-17T10:33:22,537 ******************************************************************************** 2024-05-17T10:33:22,537 ############################ 2024-05-17T10:33:22,538 # Package would be ignored # 2024-05-17T10:33:22,538 ############################ 2024-05-17T10:33:22,539 Python recognizes 'funvip.external.iqtree.bin' as an importable package[^1], 2024-05-17T10:33:22,539 but it is absent from setuptools' `packages` configuration. 2024-05-17T10:33:22,540 This leads to an ambiguous overall configuration. If you want to distribute this 2024-05-17T10:33:22,540 package, please make sure that 'funvip.external.iqtree.bin' is explicitly added 2024-05-17T10:33:22,541 to the `packages` configuration field. 2024-05-17T10:33:22,542 Alternatively, you can also rely on setuptools' discovery methods 2024-05-17T10:33:22,542 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-05-17T10:33:22,543 instead of `find_packages(...)`/`find:`). 2024-05-17T10:33:22,544 You can read more about "package discovery" on setuptools documentation page: 2024-05-17T10:33:22,545 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-05-17T10:33:22,546 If you don't want 'funvip.external.iqtree.bin' to be distributed and are 2024-05-17T10:33:22,546 already explicitly excluding 'funvip.external.iqtree.bin' via 2024-05-17T10:33:22,547 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-05-17T10:33:22,547 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-05-17T10:33:22,548 combination with a more fine grained `package-data` configuration. 2024-05-17T10:33:22,549 You can read more about "package data files" on setuptools documentation page: 2024-05-17T10:33:22,550 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-05-17T10:33:22,552 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-05-17T10:33:22,552 even if it does not contain any `.py` files. 2024-05-17T10:33:22,553 On the other hand, currently there is no concept of package data 2024-05-17T10:33:22,554 directory, all directories are treated like packages. 2024-05-17T10:33:22,554 ******************************************************************************** 2024-05-17T10:33:22,556 !! 2024-05-17T10:33:22,556 check.warn(importable) 2024-05-17T10:33:22,557 /tmp/pip-build-env-y_3wcfzt/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'funvip.external.mmseqs_Windows' is absent from the `packages` configuration. 2024-05-17T10:33:22,557 !! 2024-05-17T10:33:22,558 ******************************************************************************** 2024-05-17T10:33:22,559 ############################ 2024-05-17T10:33:22,559 # Package would be ignored # 2024-05-17T10:33:22,560 ############################ 2024-05-17T10:33:22,560 Python recognizes 'funvip.external.mmseqs_Windows' as an importable package[^1], 2024-05-17T10:33:22,561 but it is absent from setuptools' `packages` configuration. 2024-05-17T10:33:22,562 This leads to an ambiguous overall configuration. If you want to distribute this 2024-05-17T10:33:22,563 package, please make sure that 'funvip.external.mmseqs_Windows' is explicitly added 2024-05-17T10:33:22,563 to the `packages` configuration field. 2024-05-17T10:33:22,565 Alternatively, you can also rely on setuptools' discovery methods 2024-05-17T10:33:22,565 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-05-17T10:33:22,566 instead of `find_packages(...)`/`find:`). 2024-05-17T10:33:22,567 You can read more about "package discovery" on setuptools documentation page: 2024-05-17T10:33:22,568 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-05-17T10:33:22,569 If you don't want 'funvip.external.mmseqs_Windows' to be distributed and are 2024-05-17T10:33:22,569 already explicitly excluding 'funvip.external.mmseqs_Windows' via 2024-05-17T10:33:22,570 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-05-17T10:33:22,570 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-05-17T10:33:22,570 combination with a more fine grained `package-data` configuration. 2024-05-17T10:33:22,571 You can read more about "package data files" on setuptools documentation page: 2024-05-17T10:33:22,572 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-05-17T10:33:22,574 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-05-17T10:33:22,574 even if it does not contain any `.py` files. 2024-05-17T10:33:22,574 On the other hand, currently there is no concept of package data 2024-05-17T10:33:22,575 directory, all directories are treated like packages. 2024-05-17T10:33:22,575 ******************************************************************************** 2024-05-17T10:33:22,576 !! 2024-05-17T10:33:22,577 check.warn(importable) 2024-05-17T10:33:22,577 /tmp/pip-build-env-y_3wcfzt/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'funvip.external.mmseqs_Windows.bin' is absent from the `packages` configuration. 2024-05-17T10:33:22,578 !! 2024-05-17T10:33:22,579 ******************************************************************************** 2024-05-17T10:33:22,579 ############################ 2024-05-17T10:33:22,580 # Package would be ignored # 2024-05-17T10:33:22,580 ############################ 2024-05-17T10:33:22,581 Python recognizes 'funvip.external.mmseqs_Windows.bin' as an importable package[^1], 2024-05-17T10:33:22,581 but it is absent from setuptools' `packages` configuration. 2024-05-17T10:33:22,583 This leads to an ambiguous overall configuration. If you want to distribute this 2024-05-17T10:33:22,583 package, please make sure that 'funvip.external.mmseqs_Windows.bin' is explicitly added 2024-05-17T10:33:22,584 to the `packages` configuration field. 2024-05-17T10:33:22,585 Alternatively, you can also rely on setuptools' discovery methods 2024-05-17T10:33:22,586 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-05-17T10:33:22,586 instead of `find_packages(...)`/`find:`). 2024-05-17T10:33:22,587 You can read more about "package discovery" on setuptools documentation page: 2024-05-17T10:33:22,588 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-05-17T10:33:22,589 If you don't want 'funvip.external.mmseqs_Windows.bin' to be distributed and are 2024-05-17T10:33:22,590 already explicitly excluding 'funvip.external.mmseqs_Windows.bin' via 2024-05-17T10:33:22,591 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-05-17T10:33:22,591 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-05-17T10:33:22,592 combination with a more fine grained `package-data` configuration. 2024-05-17T10:33:22,593 You can read more about "package data files" on setuptools documentation page: 2024-05-17T10:33:22,594 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-05-17T10:33:22,596 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-05-17T10:33:22,596 even if it does not contain any `.py` files. 2024-05-17T10:33:22,597 On the other hand, currently there is no concept of package data 2024-05-17T10:33:22,598 directory, all directories are treated like packages. 2024-05-17T10:33:22,598 ******************************************************************************** 2024-05-17T10:33:22,599 !! 2024-05-17T10:33:22,600 check.warn(importable) 2024-05-17T10:33:22,600 /tmp/pip-build-env-y_3wcfzt/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'funvip.external.mmseqs_Windows.examples' is absent from the `packages` configuration. 2024-05-17T10:33:22,601 !! 2024-05-17T10:33:22,602 ******************************************************************************** 2024-05-17T10:33:22,602 ############################ 2024-05-17T10:33:22,603 # Package would be ignored # 2024-05-17T10:33:22,603 ############################ 2024-05-17T10:33:22,604 Python recognizes 'funvip.external.mmseqs_Windows.examples' as an importable package[^1], 2024-05-17T10:33:22,607 but it is absent from setuptools' `packages` configuration. 2024-05-17T10:33:22,644 This leads to an ambiguous overall configuration. If you want to distribute this 2024-05-17T10:33:22,646 package, please make sure that 'funvip.external.mmseqs_Windows.examples' is explicitly added 2024-05-17T10:33:22,649 to the `packages` configuration field. 2024-05-17T10:33:22,687 Alternatively, you can also rely on setuptools' discovery methods 2024-05-17T10:33:22,719 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-05-17T10:33:22,745 instead of `find_packages(...)`/`find:`). 2024-05-17T10:33:22,779 You can read more about "package discovery" on setuptools documentation page: 2024-05-17T10:33:22,835 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-05-17T10:33:22,865 If you don't want 'funvip.external.mmseqs_Windows.examples' to be distributed and are 2024-05-17T10:33:22,883 already explicitly excluding 'funvip.external.mmseqs_Windows.examples' via 2024-05-17T10:33:22,883 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-05-17T10:33:22,884 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-05-17T10:33:22,884 combination with a more fine grained `package-data` configuration. 2024-05-17T10:33:22,885 You can read more about "package data files" on setuptools documentation page: 2024-05-17T10:33:22,886 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-05-17T10:33:22,888 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-05-17T10:33:22,888 even if it does not contain any `.py` files. 2024-05-17T10:33:22,889 On the other hand, currently there is no concept of package data 2024-05-17T10:33:22,889 directory, all directories are treated like packages. 2024-05-17T10:33:22,889 ******************************************************************************** 2024-05-17T10:33:22,890 !! 2024-05-17T10:33:22,891 check.warn(importable) 2024-05-17T10:33:22,891 /tmp/pip-build-env-y_3wcfzt/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'funvip.external.mmseqs_Windows.matrices' is absent from the `packages` configuration. 2024-05-17T10:33:22,892 !! 2024-05-17T10:33:22,893 ******************************************************************************** 2024-05-17T10:33:22,893 ############################ 2024-05-17T10:33:22,894 # Package would be ignored # 2024-05-17T10:33:22,895 ############################ 2024-05-17T10:33:22,896 Python recognizes 'funvip.external.mmseqs_Windows.matrices' as an importable package[^1], 2024-05-17T10:33:22,896 but it is absent from setuptools' `packages` configuration. 2024-05-17T10:33:22,898 This leads to an ambiguous overall configuration. If you want to distribute this 2024-05-17T10:33:22,899 package, please make sure that 'funvip.external.mmseqs_Windows.matrices' is explicitly added 2024-05-17T10:33:22,900 to the `packages` configuration field. 2024-05-17T10:33:22,902 Alternatively, you can also rely on setuptools' discovery methods 2024-05-17T10:33:22,903 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-05-17T10:33:22,904 instead of `find_packages(...)`/`find:`). 2024-05-17T10:33:22,905 You can read more about "package discovery" on setuptools documentation page: 2024-05-17T10:33:22,906 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-05-17T10:33:22,907 If you don't want 'funvip.external.mmseqs_Windows.matrices' to be distributed and are 2024-05-17T10:33:22,908 already explicitly excluding 'funvip.external.mmseqs_Windows.matrices' via 2024-05-17T10:33:22,908 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-05-17T10:33:22,909 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-05-17T10:33:22,909 combination with a more fine grained `package-data` configuration. 2024-05-17T10:33:22,910 You can read more about "package data files" on setuptools documentation page: 2024-05-17T10:33:22,911 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-05-17T10:33:22,913 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-05-17T10:33:22,913 even if it does not contain any `.py` files. 2024-05-17T10:33:22,914 On the other hand, currently there is no concept of package data 2024-05-17T10:33:22,914 directory, all directories are treated like packages. 2024-05-17T10:33:22,915 ******************************************************************************** 2024-05-17T10:33:22,916 !! 2024-05-17T10:33:22,917 check.warn(importable) 2024-05-17T10:33:22,917 /tmp/pip-build-env-y_3wcfzt/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'funvip.external.mmseqs_Windows.util' is absent from the `packages` configuration. 2024-05-17T10:33:22,918 !! 2024-05-17T10:33:22,919 ******************************************************************************** 2024-05-17T10:33:22,919 ############################ 2024-05-17T10:33:22,920 # Package would be ignored # 2024-05-17T10:33:22,921 ############################ 2024-05-17T10:33:22,921 Python recognizes 'funvip.external.mmseqs_Windows.util' as an importable package[^1], 2024-05-17T10:33:22,922 but it is absent from setuptools' `packages` configuration. 2024-05-17T10:33:22,923 This leads to an ambiguous overall configuration. If you want to distribute this 2024-05-17T10:33:22,923 package, please make sure that 'funvip.external.mmseqs_Windows.util' is explicitly added 2024-05-17T10:33:22,924 to the `packages` configuration field. 2024-05-17T10:33:22,925 Alternatively, you can also rely on setuptools' discovery methods 2024-05-17T10:33:22,925 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-05-17T10:33:22,926 instead of `find_packages(...)`/`find:`). 2024-05-17T10:33:22,927 You can read more about "package discovery" on setuptools documentation page: 2024-05-17T10:33:22,928 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-05-17T10:33:22,930 If you don't want 'funvip.external.mmseqs_Windows.util' to be distributed and are 2024-05-17T10:33:22,930 already explicitly excluding 'funvip.external.mmseqs_Windows.util' via 2024-05-17T10:33:22,931 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-05-17T10:33:22,931 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-05-17T10:33:22,932 combination with a more fine grained `package-data` configuration. 2024-05-17T10:33:22,933 You can read more about "package data files" on setuptools documentation page: 2024-05-17T10:33:22,934 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-05-17T10:33:22,935 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-05-17T10:33:22,936 even if it does not contain any `.py` files. 2024-05-17T10:33:22,936 On the other hand, currently there is no concept of package data 2024-05-17T10:33:22,936 directory, all directories are treated like packages. 2024-05-17T10:33:22,937 ******************************************************************************** 2024-05-17T10:33:22,938 !! 2024-05-17T10:33:22,938 check.warn(importable) 2024-05-17T10:33:22,939 /tmp/pip-build-env-y_3wcfzt/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'funvip.preset' is absent from the `packages` configuration. 2024-05-17T10:33:22,939 !! 2024-05-17T10:33:22,940 ******************************************************************************** 2024-05-17T10:33:22,941 ############################ 2024-05-17T10:33:22,941 # Package would be ignored # 2024-05-17T10:33:22,942 ############################ 2024-05-17T10:33:22,942 Python recognizes 'funvip.preset' as an importable package[^1], 2024-05-17T10:33:22,943 but it is absent from setuptools' `packages` configuration. 2024-05-17T10:33:22,944 This leads to an ambiguous overall configuration. If you want to distribute this 2024-05-17T10:33:22,944 package, please make sure that 'funvip.preset' is explicitly added 2024-05-17T10:33:22,945 to the `packages` configuration field. 2024-05-17T10:33:22,946 Alternatively, you can also rely on setuptools' discovery methods 2024-05-17T10:33:22,946 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-05-17T10:33:22,947 instead of `find_packages(...)`/`find:`). 2024-05-17T10:33:22,948 You can read more about "package discovery" on setuptools documentation page: 2024-05-17T10:33:22,949 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-05-17T10:33:22,950 If you don't want 'funvip.preset' to be distributed and are 2024-05-17T10:33:22,950 already explicitly excluding 'funvip.preset' via 2024-05-17T10:33:22,951 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-05-17T10:33:22,951 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-05-17T10:33:22,952 combination with a more fine grained `package-data` configuration. 2024-05-17T10:33:22,953 You can read more about "package data files" on setuptools documentation page: 2024-05-17T10:33:22,954 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-05-17T10:33:22,956 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-05-17T10:33:22,957 even if it does not contain any `.py` files. 2024-05-17T10:33:22,957 On the other hand, currently there is no concept of package data 2024-05-17T10:33:22,958 directory, all directories are treated like packages. 2024-05-17T10:33:22,958 ******************************************************************************** 2024-05-17T10:33:22,959 !! 2024-05-17T10:33:22,960 check.warn(importable) 2024-05-17T10:33:22,960 /tmp/pip-build-env-y_3wcfzt/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'funvip.src' is absent from the `packages` configuration. 2024-05-17T10:33:22,961 !! 2024-05-17T10:33:22,962 ******************************************************************************** 2024-05-17T10:33:22,963 ############################ 2024-05-17T10:33:22,963 # Package would be ignored # 2024-05-17T10:33:22,964 ############################ 2024-05-17T10:33:22,964 Python recognizes 'funvip.src' as an importable package[^1], 2024-05-17T10:33:22,964 but it is absent from setuptools' `packages` configuration. 2024-05-17T10:33:22,965 This leads to an ambiguous overall configuration. If you want to distribute this 2024-05-17T10:33:22,966 package, please make sure that 'funvip.src' is explicitly added 2024-05-17T10:33:22,966 to the `packages` configuration field. 2024-05-17T10:33:22,967 Alternatively, you can also rely on setuptools' discovery methods 2024-05-17T10:33:22,968 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-05-17T10:33:22,968 instead of `find_packages(...)`/`find:`). 2024-05-17T10:33:22,969 You can read more about "package discovery" on setuptools documentation page: 2024-05-17T10:33:22,970 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-05-17T10:33:22,971 If you don't want 'funvip.src' to be distributed and are 2024-05-17T10:33:22,971 already explicitly excluding 'funvip.src' via 2024-05-17T10:33:22,972 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-05-17T10:33:22,972 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-05-17T10:33:22,973 combination with a more fine grained `package-data` configuration. 2024-05-17T10:33:22,974 You can read more about "package data files" on setuptools documentation page: 2024-05-17T10:33:22,975 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-05-17T10:33:22,977 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-05-17T10:33:22,977 even if it does not contain any `.py` files. 2024-05-17T10:33:22,978 On the other hand, currently there is no concept of package data 2024-05-17T10:33:22,978 directory, all directories are treated like packages. 2024-05-17T10:33:22,979 ******************************************************************************** 2024-05-17T10:33:22,980 !! 2024-05-17T10:33:22,981 check.warn(importable) 2024-05-17T10:33:22,981 /tmp/pip-build-env-y_3wcfzt/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'funvip.test_dataset.penicillium' is absent from the `packages` configuration. 2024-05-17T10:33:22,982 !! 2024-05-17T10:33:22,983 ******************************************************************************** 2024-05-17T10:33:22,983 ############################ 2024-05-17T10:33:22,984 # Package would be ignored # 2024-05-17T10:33:22,985 ############################ 2024-05-17T10:33:22,985 Python recognizes 'funvip.test_dataset.penicillium' as an importable package[^1], 2024-05-17T10:33:22,986 but it is absent from setuptools' `packages` configuration. 2024-05-17T10:33:22,987 This leads to an ambiguous overall configuration. If you want to distribute this 2024-05-17T10:33:22,988 package, please make sure that 'funvip.test_dataset.penicillium' is explicitly added 2024-05-17T10:33:22,988 to the `packages` configuration field. 2024-05-17T10:33:22,990 Alternatively, you can also rely on setuptools' discovery methods 2024-05-17T10:33:22,990 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-05-17T10:33:22,991 instead of `find_packages(...)`/`find:`). 2024-05-17T10:33:22,993 You can read more about "package discovery" on setuptools documentation page: 2024-05-17T10:33:22,993 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-05-17T10:33:22,994 If you don't want 'funvip.test_dataset.penicillium' to be distributed and are 2024-05-17T10:33:22,995 already explicitly excluding 'funvip.test_dataset.penicillium' via 2024-05-17T10:33:22,995 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-05-17T10:33:22,996 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-05-17T10:33:22,996 combination with a more fine grained `package-data` configuration. 2024-05-17T10:33:22,997 You can read more about "package data files" on setuptools documentation page: 2024-05-17T10:33:22,998 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-05-17T10:33:22,999 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-05-17T10:33:23,000 even if it does not contain any `.py` files. 2024-05-17T10:33:23,000 On the other hand, currently there is no concept of package data 2024-05-17T10:33:23,001 directory, all directories are treated like packages. 2024-05-17T10:33:23,001 ******************************************************************************** 2024-05-17T10:33:23,002 !! 2024-05-17T10:33:23,003 check.warn(importable) 2024-05-17T10:33:23,003 /tmp/pip-build-env-y_3wcfzt/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'funvip.test_dataset.penicillium.DB' is absent from the `packages` configuration. 2024-05-17T10:33:23,003 !! 2024-05-17T10:33:23,004 ******************************************************************************** 2024-05-17T10:33:23,016 ############################ 2024-05-17T10:33:23,026 # Package would be ignored # 2024-05-17T10:33:23,040 ############################ 2024-05-17T10:33:23,073 Python recognizes 'funvip.test_dataset.penicillium.DB' as an importable package[^1], 2024-05-17T10:33:23,128 but it is absent from setuptools' `packages` configuration. 2024-05-17T10:33:23,180 This leads to an ambiguous overall configuration. If you want to distribute this 2024-05-17T10:33:23,182 package, please make sure that 'funvip.test_dataset.penicillium.DB' is explicitly added 2024-05-17T10:33:23,183 to the `packages` configuration field. 2024-05-17T10:33:23,184 Alternatively, you can also rely on setuptools' discovery methods 2024-05-17T10:33:23,184 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-05-17T10:33:23,185 instead of `find_packages(...)`/`find:`). 2024-05-17T10:33:23,186 You can read more about "package discovery" on setuptools documentation page: 2024-05-17T10:33:23,187 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-05-17T10:33:23,188 If you don't want 'funvip.test_dataset.penicillium.DB' to be distributed and are 2024-05-17T10:33:23,188 already explicitly excluding 'funvip.test_dataset.penicillium.DB' via 2024-05-17T10:33:23,189 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-05-17T10:33:23,189 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-05-17T10:33:23,190 combination with a more fine grained `package-data` configuration. 2024-05-17T10:33:23,191 You can read more about "package data files" on setuptools documentation page: 2024-05-17T10:33:23,192 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-05-17T10:33:23,194 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-05-17T10:33:23,194 even if it does not contain any `.py` files. 2024-05-17T10:33:23,195 On the other hand, currently there is no concept of package data 2024-05-17T10:33:23,196 directory, all directories are treated like packages. 2024-05-17T10:33:23,196 ******************************************************************************** 2024-05-17T10:33:23,197 !! 2024-05-17T10:33:23,198 check.warn(importable) 2024-05-17T10:33:23,199 /tmp/pip-build-env-y_3wcfzt/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'funvip.test_dataset.penicillium.Query' is absent from the `packages` configuration. 2024-05-17T10:33:23,199 !! 2024-05-17T10:33:23,200 ******************************************************************************** 2024-05-17T10:33:23,201 ############################ 2024-05-17T10:33:23,204 # Package would be ignored # 2024-05-17T10:33:23,205 ############################ 2024-05-17T10:33:23,205 Python recognizes 'funvip.test_dataset.penicillium.Query' as an importable package[^1], 2024-05-17T10:33:23,206 but it is absent from setuptools' `packages` configuration. 2024-05-17T10:33:23,207 This leads to an ambiguous overall configuration. If you want to distribute this 2024-05-17T10:33:23,207 package, please make sure that 'funvip.test_dataset.penicillium.Query' is explicitly added 2024-05-17T10:33:23,207 to the `packages` configuration field. 2024-05-17T10:33:23,208 Alternatively, you can also rely on setuptools' discovery methods 2024-05-17T10:33:23,209 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-05-17T10:33:23,209 instead of `find_packages(...)`/`find:`). 2024-05-17T10:33:23,210 You can read more about "package discovery" on setuptools documentation page: 2024-05-17T10:33:23,211 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-05-17T10:33:23,212 If you don't want 'funvip.test_dataset.penicillium.Query' to be distributed and are 2024-05-17T10:33:23,213 already explicitly excluding 'funvip.test_dataset.penicillium.Query' via 2024-05-17T10:33:23,213 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-05-17T10:33:23,214 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-05-17T10:33:23,214 combination with a more fine grained `package-data` configuration. 2024-05-17T10:33:23,215 You can read more about "package data files" on setuptools documentation page: 2024-05-17T10:33:23,217 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-05-17T10:33:23,218 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-05-17T10:33:23,219 even if it does not contain any `.py` files. 2024-05-17T10:33:23,219 On the other hand, currently there is no concept of package data 2024-05-17T10:33:23,220 directory, all directories are treated like packages. 2024-05-17T10:33:23,220 ******************************************************************************** 2024-05-17T10:33:23,221 !! 2024-05-17T10:33:23,222 check.warn(importable) 2024-05-17T10:33:23,222 /tmp/pip-build-env-y_3wcfzt/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'funvip.test_dataset.terrei' is absent from the `packages` configuration. 2024-05-17T10:33:23,223 !! 2024-05-17T10:33:23,224 ******************************************************************************** 2024-05-17T10:33:23,224 ############################ 2024-05-17T10:33:23,225 # Package would be ignored # 2024-05-17T10:33:23,226 ############################ 2024-05-17T10:33:23,226 Python recognizes 'funvip.test_dataset.terrei' as an importable package[^1], 2024-05-17T10:33:23,227 but it is absent from setuptools' `packages` configuration. 2024-05-17T10:33:23,228 This leads to an ambiguous overall configuration. If you want to distribute this 2024-05-17T10:33:23,228 package, please make sure that 'funvip.test_dataset.terrei' is explicitly added 2024-05-17T10:33:23,229 to the `packages` configuration field. 2024-05-17T10:33:23,230 Alternatively, you can also rely on setuptools' discovery methods 2024-05-17T10:33:23,230 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-05-17T10:33:23,231 instead of `find_packages(...)`/`find:`). 2024-05-17T10:33:23,231 You can read more about "package discovery" on setuptools documentation page: 2024-05-17T10:33:23,232 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-05-17T10:33:23,233 If you don't want 'funvip.test_dataset.terrei' to be distributed and are 2024-05-17T10:33:23,234 already explicitly excluding 'funvip.test_dataset.terrei' via 2024-05-17T10:33:23,234 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-05-17T10:33:23,235 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-05-17T10:33:23,235 combination with a more fine grained `package-data` configuration. 2024-05-17T10:33:23,237 You can read more about "package data files" on setuptools documentation page: 2024-05-17T10:33:23,238 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-05-17T10:33:23,239 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-05-17T10:33:23,239 even if it does not contain any `.py` files. 2024-05-17T10:33:23,240 On the other hand, currently there is no concept of package data 2024-05-17T10:33:23,240 directory, all directories are treated like packages. 2024-05-17T10:33:23,241 ******************************************************************************** 2024-05-17T10:33:23,242 !! 2024-05-17T10:33:23,242 check.warn(importable) 2024-05-17T10:33:23,243 /tmp/pip-build-env-y_3wcfzt/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'funvip.test_dataset.terrei.DB' is absent from the `packages` configuration. 2024-05-17T10:33:23,243 !! 2024-05-17T10:33:23,244 ******************************************************************************** 2024-05-17T10:33:23,245 ############################ 2024-05-17T10:33:23,245 # Package would be ignored # 2024-05-17T10:33:23,246 ############################ 2024-05-17T10:33:23,247 Python recognizes 'funvip.test_dataset.terrei.DB' as an importable package[^1], 2024-05-17T10:33:23,247 but it is absent from setuptools' `packages` configuration. 2024-05-17T10:33:23,248 This leads to an ambiguous overall configuration. If you want to distribute this 2024-05-17T10:33:23,249 package, please make sure that 'funvip.test_dataset.terrei.DB' is explicitly added 2024-05-17T10:33:23,249 to the `packages` configuration field. 2024-05-17T10:33:23,250 Alternatively, you can also rely on setuptools' discovery methods 2024-05-17T10:33:23,251 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-05-17T10:33:23,252 instead of `find_packages(...)`/`find:`). 2024-05-17T10:33:23,253 You can read more about "package discovery" on setuptools documentation page: 2024-05-17T10:33:23,254 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-05-17T10:33:23,255 If you don't want 'funvip.test_dataset.terrei.DB' to be distributed and are 2024-05-17T10:33:23,256 already explicitly excluding 'funvip.test_dataset.terrei.DB' via 2024-05-17T10:33:23,256 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-05-17T10:33:23,257 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-05-17T10:33:23,257 combination with a more fine grained `package-data` configuration. 2024-05-17T10:33:23,259 You can read more about "package data files" on setuptools documentation page: 2024-05-17T10:33:23,260 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-05-17T10:33:23,261 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-05-17T10:33:23,267 even if it does not contain any `.py` files. 2024-05-17T10:33:23,275 On the other hand, currently there is no concept of package data 2024-05-17T10:33:23,284 directory, all directories are treated like packages. 2024-05-17T10:33:23,299 ******************************************************************************** 2024-05-17T10:33:23,348 !! 2024-05-17T10:33:23,374 check.warn(importable) 2024-05-17T10:33:23,403 /tmp/pip-build-env-y_3wcfzt/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'funvip.test_dataset.terrei.Query' is absent from the `packages` configuration. 2024-05-17T10:33:23,441 !! 2024-05-17T10:33:23,449 ******************************************************************************** 2024-05-17T10:33:23,449 ############################ 2024-05-17T10:33:23,450 # Package would be ignored # 2024-05-17T10:33:23,450 ############################ 2024-05-17T10:33:23,450 Python recognizes 'funvip.test_dataset.terrei.Query' as an importable package[^1], 2024-05-17T10:33:23,451 but it is absent from setuptools' `packages` configuration. 2024-05-17T10:33:23,452 This leads to an ambiguous overall configuration. If you want to distribute this 2024-05-17T10:33:23,452 package, please make sure that 'funvip.test_dataset.terrei.Query' is explicitly added 2024-05-17T10:33:23,453 to the `packages` configuration field. 2024-05-17T10:33:23,454 Alternatively, you can also rely on setuptools' discovery methods 2024-05-17T10:33:23,455 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-05-17T10:33:23,455 instead of `find_packages(...)`/`find:`). 2024-05-17T10:33:23,456 You can read more about "package discovery" on setuptools documentation page: 2024-05-17T10:33:23,457 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-05-17T10:33:23,458 If you don't want 'funvip.test_dataset.terrei.Query' to be distributed and are 2024-05-17T10:33:23,459 already explicitly excluding 'funvip.test_dataset.terrei.Query' via 2024-05-17T10:33:23,459 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-05-17T10:33:23,460 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-05-17T10:33:23,461 combination with a more fine grained `package-data` configuration. 2024-05-17T10:33:23,462 You can read more about "package data files" on setuptools documentation page: 2024-05-17T10:33:23,463 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-05-17T10:33:23,465 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-05-17T10:33:23,466 even if it does not contain any `.py` files. 2024-05-17T10:33:23,466 On the other hand, currently there is no concept of package data 2024-05-17T10:33:23,467 directory, all directories are treated like packages. 2024-05-17T10:33:23,467 ******************************************************************************** 2024-05-17T10:33:23,469 !! 2024-05-17T10:33:23,469 check.warn(importable) 2024-05-17T10:33:23,470 creating build/lib/funvip/data 2024-05-17T10:33:23,470 copying funvip/data/Option_manager.xlsx -> build/lib/funvip/data 2024-05-17T10:33:23,471 copying funvip/data/__init__.py -> build/lib/funvip/data 2024-05-17T10:33:23,471 copying funvip/data/genus_line.txt -> build/lib/funvip/data 2024-05-17T10:33:23,472 creating build/lib/funvip/external 2024-05-17T10:33:23,473 copying funvip/external/MAFFT_LICENSE -> build/lib/funvip/external 2024-05-17T10:33:23,473 copying funvip/external/MAFFT_Windows.zip -> build/lib/funvip/external 2024-05-17T10:33:23,474 copying funvip/external/__init__.py -> build/lib/funvip/external 2024-05-17T10:33:23,474 creating build/lib/funvip/external/BLAST_Windows 2024-05-17T10:33:23,474 copying funvip/external/BLAST_Windows/Uninstall-ncbi-blast-2.12.0+.exe -> build/lib/funvip/external/BLAST_Windows 2024-05-17T10:33:23,475 creating build/lib/funvip/external/BLAST_Windows/bin 2024-05-17T10:33:23,475 copying funvip/external/BLAST_Windows/bin/blastn.exe -> build/lib/funvip/external/BLAST_Windows/bin 2024-05-17T10:33:23,476 copying funvip/external/BLAST_Windows/bin/cleanup-blastdb-volumes.py -> build/lib/funvip/external/BLAST_Windows/bin 2024-05-17T10:33:23,477 copying funvip/external/BLAST_Windows/bin/get_species_taxids.sh -> build/lib/funvip/external/BLAST_Windows/bin 2024-05-17T10:33:23,479 copying funvip/external/BLAST_Windows/bin/legacy_blast.pl -> build/lib/funvip/external/BLAST_Windows/bin 2024-05-17T10:33:23,480 copying funvip/external/BLAST_Windows/bin/makeblastdb.exe -> build/lib/funvip/external/BLAST_Windows/bin 2024-05-17T10:33:23,480 copying funvip/external/BLAST_Windows/bin/nghttp2.dll -> build/lib/funvip/external/BLAST_Windows/bin 2024-05-17T10:33:23,481 copying funvip/external/BLAST_Windows/bin/update_blastdb.pl -> build/lib/funvip/external/BLAST_Windows/bin 2024-05-17T10:33:23,481 creating build/lib/funvip/external/BLAST_Windows/doc 2024-05-17T10:33:23,482 copying funvip/external/BLAST_Windows/doc/README.txt -> build/lib/funvip/external/BLAST_Windows/doc 2024-05-17T10:33:23,482 creating build/lib/funvip/external/FastTree_Windows 2024-05-17T10:33:23,483 copying funvip/external/FastTree_Windows/FastTree.exe -> build/lib/funvip/external/FastTree_Windows 2024-05-17T10:33:23,483 creating build/lib/funvip/external/Gblocks_Windows_0.91b 2024-05-17T10:33:23,484 creating build/lib/funvip/external/Gblocks_Windows_0.91b/Gblocks_0.91b 2024-05-17T10:33:23,484 copying funvip/external/Gblocks_Windows_0.91b/Gblocks_0.91b/Gblocks.exe -> build/lib/funvip/external/Gblocks_Windows_0.91b/Gblocks_0.91b 2024-05-17T10:33:23,490 copying funvip/external/Gblocks_Windows_0.91b/Gblocks_0.91b/nad3.pir -> build/lib/funvip/external/Gblocks_Windows_0.91b/Gblocks_0.91b 2024-05-17T10:33:23,492 copying funvip/external/Gblocks_Windows_0.91b/Gblocks_0.91b/paths -> build/lib/funvip/external/Gblocks_Windows_0.91b/Gblocks_0.91b 2024-05-17T10:33:23,494 creating build/lib/funvip/external/Gblocks_Windows_0.91b/Gblocks_0.91b/Documentation 2024-05-17T10:33:23,495 copying funvip/external/Gblocks_Windows_0.91b/Gblocks_0.91b/Documentation/Gblocks_documentation.html -> build/lib/funvip/external/Gblocks_Windows_0.91b/Gblocks_0.91b/Documentation 2024-05-17T10:33:23,498 creating build/lib/funvip/external/Gblocks_Windows_0.91b/Gblocks_0.91b/more_alignments 2024-05-17T10:33:23,499 copying funvip/external/Gblocks_Windows_0.91b/Gblocks_0.91b/more_alignments/cox2.pir -> build/lib/funvip/external/Gblocks_Windows_0.91b/Gblocks_0.91b/more_alignments 2024-05-17T10:33:23,502 copying funvip/external/Gblocks_Windows_0.91b/Gblocks_0.91b/more_alignments/cytb.pir -> build/lib/funvip/external/Gblocks_Windows_0.91b/Gblocks_0.91b/more_alignments 2024-05-17T10:33:23,505 copying funvip/external/Gblocks_Windows_0.91b/Gblocks_0.91b/more_alignments/nad3.pir -> build/lib/funvip/external/Gblocks_Windows_0.91b/Gblocks_0.91b/more_alignments 2024-05-17T10:33:23,507 copying funvip/external/Gblocks_Windows_0.91b/Gblocks_0.91b/more_alignments/nad5.pir -> build/lib/funvip/external/Gblocks_Windows_0.91b/Gblocks_0.91b/more_alignments 2024-05-17T10:33:23,509 creating build/lib/funvip/external/RAxML_Windows 2024-05-17T10:33:23,510 copying funvip/external/RAxML_Windows/GPL-3.0.txt -> build/lib/funvip/external/RAxML_Windows 2024-05-17T10:33:23,514 copying funvip/external/RAxML_Windows/README -> build/lib/funvip/external/RAxML_Windows 2024-05-17T10:33:23,516 copying funvip/external/RAxML_Windows/raxmlHPC-PTHREADS-AVX2.exe -> build/lib/funvip/external/RAxML_Windows 2024-05-17T10:33:23,588 creating build/lib/funvip/external/iqtree 2024-05-17T10:33:23,589 copying funvip/external/iqtree/example.cf -> build/lib/funvip/external/iqtree 2024-05-17T10:33:23,625 copying funvip/external/iqtree/example.nex -> build/lib/funvip/external/iqtree 2024-05-17T10:33:23,627 copying funvip/external/iqtree/example.phy -> build/lib/funvip/external/iqtree 2024-05-17T10:33:23,630 copying funvip/external/iqtree/models.nex -> build/lib/funvip/external/iqtree 2024-05-17T10:33:23,634 creating build/lib/funvip/external/iqtree/bin 2024-05-17T10:33:23,635 copying funvip/external/iqtree/bin/iqtree2-click.exe -> build/lib/funvip/external/iqtree/bin 2024-05-17T10:33:23,814 copying funvip/external/iqtree/bin/iqtree2.exe -> build/lib/funvip/external/iqtree/bin 2024-05-17T10:33:23,987 copying funvip/external/iqtree/bin/libiomp5md.dll -> build/lib/funvip/external/iqtree/bin 2024-05-17T10:33:24,007 creating build/lib/funvip/external/mmseqs_Windows 2024-05-17T10:33:24,008 copying funvip/external/mmseqs_Windows/LICENSE.md -> build/lib/funvip/external/mmseqs_Windows 2024-05-17T10:33:24,011 copying funvip/external/mmseqs_Windows/README.md -> build/lib/funvip/external/mmseqs_Windows 2024-05-17T10:33:24,014 copying funvip/external/mmseqs_Windows/mmseqs.bat -> build/lib/funvip/external/mmseqs_Windows 2024-05-17T10:33:24,016 creating build/lib/funvip/external/mmseqs_Windows/bin 2024-05-17T10:33:24,017 copying funvip/external/mmseqs_Windows/bin/busybox.exe -> build/lib/funvip/external/mmseqs_Windows/bin 2024-05-17T10:33:24,029 copying funvip/external/mmseqs_Windows/bin/cygbz2-1.dll -> build/lib/funvip/external/mmseqs_Windows/bin 2024-05-17T10:33:24,033 copying funvip/external/mmseqs_Windows/bin/cyggcc_s-seh-1.dll -> build/lib/funvip/external/mmseqs_Windows/bin 2024-05-17T10:33:24,037 copying funvip/external/mmseqs_Windows/bin/cyggomp-1.dll -> build/lib/funvip/external/mmseqs_Windows/bin 2024-05-17T10:33:24,042 copying funvip/external/mmseqs_Windows/bin/cygstdc++-6.dll -> build/lib/funvip/external/mmseqs_Windows/bin 2024-05-17T10:33:24,073 copying funvip/external/mmseqs_Windows/bin/cygwin1.dll -> build/lib/funvip/external/mmseqs_Windows/bin 2024-05-17T10:33:24,134 copying funvip/external/mmseqs_Windows/bin/cygz.dll -> build/lib/funvip/external/mmseqs_Windows/bin 2024-05-17T10:33:24,138 copying funvip/external/mmseqs_Windows/bin/mmseqs.exe -> build/lib/funvip/external/mmseqs_Windows/bin 2024-05-17T10:33:24,324 creating build/lib/funvip/external/mmseqs_Windows/examples 2024-05-17T10:33:24,325 copying funvip/external/mmseqs_Windows/examples/QUERY.fasta -> build/lib/funvip/external/mmseqs_Windows/examples 2024-05-17T10:33:24,338 creating build/lib/funvip/external/mmseqs_Windows/matrices 2024-05-17T10:33:24,340 copying funvip/external/mmseqs_Windows/matrices/PAM10.out -> build/lib/funvip/external/mmseqs_Windows/matrices 2024-05-17T10:33:24,342 copying funvip/external/mmseqs_Windows/matrices/PAM100.out -> build/lib/funvip/external/mmseqs_Windows/matrices 2024-05-17T10:33:24,345 copying funvip/external/mmseqs_Windows/matrices/PAM110.out -> build/lib/funvip/external/mmseqs_Windows/matrices 2024-05-17T10:33:24,347 copying funvip/external/mmseqs_Windows/matrices/PAM120.out -> build/lib/funvip/external/mmseqs_Windows/matrices 2024-05-17T10:33:24,349 copying funvip/external/mmseqs_Windows/matrices/PAM130.out -> build/lib/funvip/external/mmseqs_Windows/matrices 2024-05-17T10:33:24,351 copying funvip/external/mmseqs_Windows/matrices/PAM140.out -> build/lib/funvip/external/mmseqs_Windows/matrices 2024-05-17T10:33:24,353 copying funvip/external/mmseqs_Windows/matrices/PAM150.out -> build/lib/funvip/external/mmseqs_Windows/matrices 2024-05-17T10:33:24,356 copying funvip/external/mmseqs_Windows/matrices/PAM160.out -> build/lib/funvip/external/mmseqs_Windows/matrices 2024-05-17T10:33:24,358 copying funvip/external/mmseqs_Windows/matrices/PAM170.out -> build/lib/funvip/external/mmseqs_Windows/matrices 2024-05-17T10:33:24,361 copying funvip/external/mmseqs_Windows/matrices/PAM180.out -> build/lib/funvip/external/mmseqs_Windows/matrices 2024-05-17T10:33:24,363 copying funvip/external/mmseqs_Windows/matrices/PAM190.out -> build/lib/funvip/external/mmseqs_Windows/matrices 2024-05-17T10:33:24,365 copying funvip/external/mmseqs_Windows/matrices/PAM20.out -> build/lib/funvip/external/mmseqs_Windows/matrices 2024-05-17T10:33:24,368 copying funvip/external/mmseqs_Windows/matrices/PAM30.out -> build/lib/funvip/external/mmseqs_Windows/matrices 2024-05-17T10:33:24,370 copying funvip/external/mmseqs_Windows/matrices/PAM40.out -> build/lib/funvip/external/mmseqs_Windows/matrices 2024-05-17T10:33:24,372 copying funvip/external/mmseqs_Windows/matrices/PAM50.out -> build/lib/funvip/external/mmseqs_Windows/matrices 2024-05-17T10:33:24,375 copying funvip/external/mmseqs_Windows/matrices/PAM60.out -> build/lib/funvip/external/mmseqs_Windows/matrices 2024-05-17T10:33:24,377 copying funvip/external/mmseqs_Windows/matrices/PAM70.out -> build/lib/funvip/external/mmseqs_Windows/matrices 2024-05-17T10:33:24,379 copying funvip/external/mmseqs_Windows/matrices/PAM80.out -> build/lib/funvip/external/mmseqs_Windows/matrices 2024-05-17T10:33:24,381 copying funvip/external/mmseqs_Windows/matrices/PAM90.out -> build/lib/funvip/external/mmseqs_Windows/matrices 2024-05-17T10:33:24,383 copying funvip/external/mmseqs_Windows/matrices/VTML10.out -> build/lib/funvip/external/mmseqs_Windows/matrices 2024-05-17T10:33:24,386 copying funvip/external/mmseqs_Windows/matrices/VTML120.out -> build/lib/funvip/external/mmseqs_Windows/matrices 2024-05-17T10:33:24,388 copying funvip/external/mmseqs_Windows/matrices/VTML160.out -> build/lib/funvip/external/mmseqs_Windows/matrices 2024-05-17T10:33:24,390 copying funvip/external/mmseqs_Windows/matrices/VTML20.out -> build/lib/funvip/external/mmseqs_Windows/matrices 2024-05-17T10:33:24,393 copying funvip/external/mmseqs_Windows/matrices/VTML40.out -> build/lib/funvip/external/mmseqs_Windows/matrices 2024-05-17T10:33:24,395 copying funvip/external/mmseqs_Windows/matrices/VTML80.out -> build/lib/funvip/external/mmseqs_Windows/matrices 2024-05-17T10:33:24,398 copying funvip/external/mmseqs_Windows/matrices/blosum100.out -> build/lib/funvip/external/mmseqs_Windows/matrices 2024-05-17T10:33:24,400 copying funvip/external/mmseqs_Windows/matrices/blosum30.out -> build/lib/funvip/external/mmseqs_Windows/matrices 2024-05-17T10:33:24,402 copying funvip/external/mmseqs_Windows/matrices/blosum35.out -> build/lib/funvip/external/mmseqs_Windows/matrices 2024-05-17T10:33:24,405 copying funvip/external/mmseqs_Windows/matrices/blosum40.out -> build/lib/funvip/external/mmseqs_Windows/matrices 2024-05-17T10:33:24,407 copying funvip/external/mmseqs_Windows/matrices/blosum45.out -> build/lib/funvip/external/mmseqs_Windows/matrices 2024-05-17T10:33:24,410 copying funvip/external/mmseqs_Windows/matrices/blosum50.out -> build/lib/funvip/external/mmseqs_Windows/matrices 2024-05-17T10:33:24,412 copying funvip/external/mmseqs_Windows/matrices/blosum55.out -> build/lib/funvip/external/mmseqs_Windows/matrices 2024-05-17T10:33:24,415 copying funvip/external/mmseqs_Windows/matrices/blosum60.out -> build/lib/funvip/external/mmseqs_Windows/matrices 2024-05-17T10:33:24,417 copying funvip/external/mmseqs_Windows/matrices/blosum62.out -> build/lib/funvip/external/mmseqs_Windows/matrices 2024-05-17T10:33:24,420 copying funvip/external/mmseqs_Windows/matrices/blosum65.out -> build/lib/funvip/external/mmseqs_Windows/matrices 2024-05-17T10:33:24,422 copying funvip/external/mmseqs_Windows/matrices/blosum70.out -> build/lib/funvip/external/mmseqs_Windows/matrices 2024-05-17T10:33:24,425 copying funvip/external/mmseqs_Windows/matrices/blosum75.out -> build/lib/funvip/external/mmseqs_Windows/matrices 2024-05-17T10:33:24,427 copying funvip/external/mmseqs_Windows/matrices/blosum80.out -> build/lib/funvip/external/mmseqs_Windows/matrices 2024-05-17T10:33:24,430 copying funvip/external/mmseqs_Windows/matrices/blosum85.out -> build/lib/funvip/external/mmseqs_Windows/matrices 2024-05-17T10:33:24,432 copying funvip/external/mmseqs_Windows/matrices/blosum90.out -> build/lib/funvip/external/mmseqs_Windows/matrices 2024-05-17T10:33:24,434 copying funvip/external/mmseqs_Windows/matrices/blosum95.out -> build/lib/funvip/external/mmseqs_Windows/matrices 2024-05-17T10:33:24,436 copying funvip/external/mmseqs_Windows/matrices/nucleotide.out -> build/lib/funvip/external/mmseqs_Windows/matrices 2024-05-17T10:33:24,438 creating build/lib/funvip/external/mmseqs_Windows/util 2024-05-17T10:33:24,439 copying funvip/external/mmseqs_Windows/util/bash-completion.sh -> build/lib/funvip/external/mmseqs_Windows/util 2024-05-17T10:33:24,441 creating build/lib/funvip/external/trimal.v1.4 2024-05-17T10:33:24,441 creating build/lib/funvip/external/trimal.v1.4/trimAl 2024-05-17T10:33:24,442 copying funvip/external/trimal.v1.4/trimAl/AUTHORS -> build/lib/funvip/external/trimal.v1.4/trimAl 2024-05-17T10:33:24,444 copying funvip/external/trimal.v1.4/trimAl/CHANGELOG -> build/lib/funvip/external/trimal.v1.4/trimAl 2024-05-17T10:33:24,447 copying funvip/external/trimal.v1.4/trimAl/LICENSE -> build/lib/funvip/external/trimal.v1.4/trimAl 2024-05-17T10:33:24,449 copying funvip/external/trimal.v1.4/trimAl/README -> build/lib/funvip/external/trimal.v1.4/trimAl 2024-05-17T10:33:24,451 creating build/lib/funvip/external/trimal.v1.4/trimAl/bin 2024-05-17T10:33:24,452 copying funvip/external/trimal.v1.4/trimAl/bin/libgcc_s_dw2-1.dll -> build/lib/funvip/external/trimal.v1.4/trimAl/bin 2024-05-17T10:33:24,470 copying funvip/external/trimal.v1.4/trimAl/bin/libstdc++-6.dll -> build/lib/funvip/external/trimal.v1.4/trimAl/bin 2024-05-17T10:33:24,495 copying funvip/external/trimal.v1.4/trimAl/bin/trimal.exe -> build/lib/funvip/external/trimal.v1.4/trimAl/bin 2024-05-17T10:33:24,503 creating build/lib/funvip/external/trimal.v1.4/trimAl/scripts 2024-05-17T10:33:24,504 copying funvip/external/trimal.v1.4/trimAl/scripts/check_codon_alignments.py -> build/lib/funvip/external/trimal.v1.4/trimAl/scripts 2024-05-17T10:33:24,506 copying funvip/external/trimal.v1.4/trimAl/scripts/compare_trimmed_msas.sh -> build/lib/funvip/external/trimal.v1.4/trimAl/scripts 2024-05-17T10:33:24,509 copying funvip/external/trimal.v1.4/trimAl/scripts/generateRandomAlignmentsUsingAsSeedRealAlignments.py -> build/lib/funvip/external/trimal.v1.4/trimAl/scripts 2024-05-17T10:33:24,511 copying funvip/external/trimal.v1.4/trimAl/scripts/generate_trimmed_msas.sh -> build/lib/funvip/external/trimal.v1.4/trimAl/scripts 2024-05-17T10:33:24,515 copying funvip/external/trimal.v1.4/trimAl/scripts/get_sequence_representative_from_alignment.py -> build/lib/funvip/external/trimal.v1.4/trimAl/scripts 2024-05-17T10:33:24,517 copying funvip/external/trimal.v1.4/trimAl/scripts/get_sequences_gaps_ratio.py -> build/lib/funvip/external/trimal.v1.4/trimAl/scripts 2024-05-17T10:33:24,519 copying funvip/external/trimal.v1.4/trimAl/scripts/remove_shorter_sequences.py -> build/lib/funvip/external/trimal.v1.4/trimAl/scripts 2024-05-17T10:33:24,522 copying funvip/external/trimal.v1.4/trimAl/scripts/selective_trimming_for_dNdS_analyses.based_neighbours.py -> build/lib/funvip/external/trimal.v1.4/trimAl/scripts 2024-05-17T10:33:24,524 copying funvip/external/trimal.v1.4/trimAl/scripts/set_manual_boundaries.py -> build/lib/funvip/external/trimal.v1.4/trimAl/scripts 2024-05-17T10:33:24,527 creating build/lib/funvip/external/trimal.v1.4/trimAl/source 2024-05-17T10:33:24,528 copying funvip/external/trimal.v1.4/trimAl/source/alignment.cpp -> build/lib/funvip/external/trimal.v1.4/trimAl/source 2024-05-17T10:33:24,533 copying funvip/external/trimal.v1.4/trimAl/source/alignment.h -> build/lib/funvip/external/trimal.v1.4/trimAl/source 2024-05-17T10:33:24,537 copying funvip/external/trimal.v1.4/trimAl/source/alignment.o -> build/lib/funvip/external/trimal.v1.4/trimAl/source 2024-05-17T10:33:24,542 copying funvip/external/trimal.v1.4/trimAl/source/autAlignment.cpp -> build/lib/funvip/external/trimal.v1.4/trimAl/source 2024-05-17T10:33:24,545 copying funvip/external/trimal.v1.4/trimAl/source/autAlignment.o -> build/lib/funvip/external/trimal.v1.4/trimAl/source 2024-05-17T10:33:24,548 copying funvip/external/trimal.v1.4/trimAl/source/compareFiles.cpp -> build/lib/funvip/external/trimal.v1.4/trimAl/source 2024-05-17T10:33:24,551 copying funvip/external/trimal.v1.4/trimAl/source/compareFiles.h -> build/lib/funvip/external/trimal.v1.4/trimAl/source 2024-05-17T10:33:24,554 copying funvip/external/trimal.v1.4/trimAl/source/compareFiles.o -> build/lib/funvip/external/trimal.v1.4/trimAl/source 2024-05-17T10:33:24,557 copying funvip/external/trimal.v1.4/trimAl/source/defines.h -> build/lib/funvip/external/trimal.v1.4/trimAl/source 2024-05-17T10:33:24,559 copying funvip/external/trimal.v1.4/trimAl/source/main.cpp -> build/lib/funvip/external/trimal.v1.4/trimAl/source 2024-05-17T10:33:24,562 copying funvip/external/trimal.v1.4/trimAl/source/makefile -> build/lib/funvip/external/trimal.v1.4/trimAl/source 2024-05-17T10:33:24,565 copying funvip/external/trimal.v1.4/trimAl/source/makefile.MacOS -> build/lib/funvip/external/trimal.v1.4/trimAl/source 2024-05-17T10:33:24,568 copying funvip/external/trimal.v1.4/trimAl/source/readAl.cpp -> build/lib/funvip/external/trimal.v1.4/trimAl/source 2024-05-17T10:33:24,571 copying funvip/external/trimal.v1.4/trimAl/source/readal.exe -> build/lib/funvip/external/trimal.v1.4/trimAl/source 2024-05-17T10:33:24,578 copying funvip/external/trimal.v1.4/trimAl/source/rwAlignment.cpp -> build/lib/funvip/external/trimal.v1.4/trimAl/source 2024-05-17T10:33:24,581 copying funvip/external/trimal.v1.4/trimAl/source/rwAlignment.o -> build/lib/funvip/external/trimal.v1.4/trimAl/source 2024-05-17T10:33:24,585 copying funvip/external/trimal.v1.4/trimAl/source/sequencesMatrix.cpp -> build/lib/funvip/external/trimal.v1.4/trimAl/source 2024-05-17T10:33:24,587 copying funvip/external/trimal.v1.4/trimAl/source/sequencesMatrix.h -> build/lib/funvip/external/trimal.v1.4/trimAl/source 2024-05-17T10:33:24,589 copying funvip/external/trimal.v1.4/trimAl/source/sequencesMatrix.o -> build/lib/funvip/external/trimal.v1.4/trimAl/source 2024-05-17T10:33:24,592 copying funvip/external/trimal.v1.4/trimAl/source/similarityMatrix.cpp -> build/lib/funvip/external/trimal.v1.4/trimAl/source 2024-05-17T10:33:24,594 copying funvip/external/trimal.v1.4/trimAl/source/similarityMatrix.h -> build/lib/funvip/external/trimal.v1.4/trimAl/source 2024-05-17T10:33:24,597 copying funvip/external/trimal.v1.4/trimAl/source/similarityMatrix.o -> build/lib/funvip/external/trimal.v1.4/trimAl/source 2024-05-17T10:33:24,599 copying funvip/external/trimal.v1.4/trimAl/source/statAl.cpp -> build/lib/funvip/external/trimal.v1.4/trimAl/source 2024-05-17T10:33:24,602 copying funvip/external/trimal.v1.4/trimAl/source/statal.exe -> build/lib/funvip/external/trimal.v1.4/trimAl/source 2024-05-17T10:33:24,610 copying funvip/external/trimal.v1.4/trimAl/source/statisticsConservation.cpp -> build/lib/funvip/external/trimal.v1.4/trimAl/source 2024-05-17T10:33:24,612 copying funvip/external/trimal.v1.4/trimAl/source/statisticsConservation.h -> build/lib/funvip/external/trimal.v1.4/trimAl/source 2024-05-17T10:33:24,615 copying funvip/external/trimal.v1.4/trimAl/source/statisticsConservation.o -> build/lib/funvip/external/trimal.v1.4/trimAl/source 2024-05-17T10:33:24,617 copying funvip/external/trimal.v1.4/trimAl/source/statisticsFiles.cpp -> build/lib/funvip/external/trimal.v1.4/trimAl/source 2024-05-17T10:33:24,619 copying funvip/external/trimal.v1.4/trimAl/source/statisticsFiles.h -> build/lib/funvip/external/trimal.v1.4/trimAl/source 2024-05-17T10:33:24,621 copying funvip/external/trimal.v1.4/trimAl/source/statisticsGaps.cpp -> build/lib/funvip/external/trimal.v1.4/trimAl/source 2024-05-17T10:33:24,624 copying funvip/external/trimal.v1.4/trimAl/source/statisticsGaps.h -> build/lib/funvip/external/trimal.v1.4/trimAl/source 2024-05-17T10:33:24,626 copying funvip/external/trimal.v1.4/trimAl/source/statisticsGaps.o -> build/lib/funvip/external/trimal.v1.4/trimAl/source 2024-05-17T10:33:24,628 copying funvip/external/trimal.v1.4/trimAl/source/utils.cpp -> build/lib/funvip/external/trimal.v1.4/trimAl/source 2024-05-17T10:33:24,631 copying funvip/external/trimal.v1.4/trimAl/source/utils.h -> build/lib/funvip/external/trimal.v1.4/trimAl/source 2024-05-17T10:33:24,633 copying funvip/external/trimal.v1.4/trimAl/source/utils.o -> build/lib/funvip/external/trimal.v1.4/trimAl/source 2024-05-17T10:33:24,636 copying funvip/external/trimal.v1.4/trimAl/source/values.h -> build/lib/funvip/external/trimal.v1.4/trimAl/source 2024-05-17T10:33:24,639 creating build/lib/funvip/preset 2024-05-17T10:33:24,639 copying funvip/preset/accurate.yaml -> build/lib/funvip/preset 2024-05-17T10:33:24,641 copying funvip/preset/fast.yaml -> build/lib/funvip/preset 2024-05-17T10:33:24,643 creating build/lib/funvip/src 2024-05-17T10:33:24,644 copying funvip/src/__init__.py -> build/lib/funvip/src 2024-05-17T10:33:24,646 copying funvip/src/align.py -> build/lib/funvip/src 2024-05-17T10:33:24,649 copying funvip/src/cluster.py -> build/lib/funvip/src 2024-05-17T10:33:24,651 copying funvip/src/command.py -> build/lib/funvip/src 2024-05-17T10:33:24,654 copying funvip/src/concatenate.py -> build/lib/funvip/src 2024-05-17T10:33:24,657 copying funvip/src/dataset.py -> build/lib/funvip/src 2024-05-17T10:33:24,660 copying funvip/src/ext.py -> build/lib/funvip/src 2024-05-17T10:33:24,663 copying funvip/src/hasher.py -> build/lib/funvip/src 2024-05-17T10:33:24,664 copying funvip/src/initialize.py -> build/lib/funvip/src 2024-05-17T10:33:24,667 copying funvip/src/logger.py -> build/lib/funvip/src 2024-05-17T10:33:24,669 copying funvip/src/logics.py -> build/lib/funvip/src 2024-05-17T10:33:24,671 copying funvip/src/modeltest.py -> build/lib/funvip/src 2024-05-17T10:33:24,674 copying funvip/src/ncbi.py -> build/lib/funvip/src 2024-05-17T10:33:24,676 copying funvip/src/opt_generator.py -> build/lib/funvip/src 2024-05-17T10:33:24,678 copying funvip/src/patch.py -> build/lib/funvip/src 2024-05-17T10:33:24,680 copying funvip/src/reporter.py -> build/lib/funvip/src 2024-05-17T10:33:24,683 copying funvip/src/save.py -> build/lib/funvip/src 2024-05-17T10:33:24,686 copying funvip/src/search.py -> build/lib/funvip/src 2024-05-17T10:33:24,688 copying funvip/src/tool.py -> build/lib/funvip/src 2024-05-17T10:33:24,691 copying funvip/src/tree.py -> build/lib/funvip/src 2024-05-17T10:33:24,693 copying funvip/src/tree_interpretation.py -> build/lib/funvip/src 2024-05-17T10:33:24,696 copying funvip/src/tree_interpretation_pipe.py -> build/lib/funvip/src 2024-05-17T10:33:24,699 copying funvip/src/trim.py -> build/lib/funvip/src 2024-05-17T10:33:24,701 copying funvip/src/validate_input.py -> build/lib/funvip/src 2024-05-17T10:33:24,704 copying funvip/src/validate_option.py -> build/lib/funvip/src 2024-05-17T10:33:24,708 copying funvip/src/validation.py -> build/lib/funvip/src 2024-05-17T10:33:24,710 copying funvip/src/version.py -> build/lib/funvip/src 2024-05-17T10:33:24,712 creating build/lib/funvip/test_dataset 2024-05-17T10:33:24,713 creating build/lib/funvip/test_dataset/penicillium 2024-05-17T10:33:24,714 copying funvip/test_dataset/penicillium/Options.config -> build/lib/funvip/test_dataset/penicillium 2024-05-17T10:33:24,716 copying funvip/test_dataset/penicillium/preset.yaml -> build/lib/funvip/test_dataset/penicillium 2024-05-17T10:33:24,718 creating build/lib/funvip/test_dataset/penicillium/DB 2024-05-17T10:33:24,719 copying funvip/test_dataset/penicillium/DB/DB_Penicillium.xlsx -> build/lib/funvip/test_dataset/penicillium/DB 2024-05-17T10:33:24,727 creating build/lib/funvip/test_dataset/penicillium/Query 2024-05-17T10:33:24,728 copying funvip/test_dataset/penicillium/Query/Query.xlsx -> build/lib/funvip/test_dataset/penicillium/Query 2024-05-17T10:33:24,731 creating build/lib/funvip/test_dataset/terrei 2024-05-17T10:33:24,732 copying funvip/test_dataset/terrei/preset.yaml -> build/lib/funvip/test_dataset/terrei 2024-05-17T10:33:24,734 creating build/lib/funvip/test_dataset/terrei/DB 2024-05-17T10:33:24,735 copying funvip/test_dataset/terrei/DB/FunVIP_Aspergillus_db.xlsx -> build/lib/funvip/test_dataset/terrei/DB 2024-05-17T10:33:24,737 creating build/lib/funvip/test_dataset/terrei/Query 2024-05-17T10:33:24,738 copying funvip/test_dataset/terrei/Query/FunVIP_Aspergillus_query.xlsx -> build/lib/funvip/test_dataset/terrei/Query 2024-05-17T10:33:24,748 installing to build/bdist.linux-armv7l/wheel 2024-05-17T10:33:24,749 running install 2024-05-17T10:33:24,774 running install_lib 2024-05-17T10:33:24,778 creating build/bdist.linux-armv7l 2024-05-17T10:33:24,778 creating build/bdist.linux-armv7l/wheel 2024-05-17T10:33:24,780 creating build/bdist.linux-armv7l/wheel/funvip 2024-05-17T10:33:24,781 copying build/lib/funvip/FunVIP_GUI.py -> build/bdist.linux-armv7l/wheel/funvip 2024-05-17T10:33:24,784 copying build/lib/funvip/main.py -> build/bdist.linux-armv7l/wheel/funvip 2024-05-17T10:33:24,786 creating build/bdist.linux-armv7l/wheel/funvip/data 2024-05-17T10:33:24,787 copying build/lib/funvip/data/genus_line.txt -> build/bdist.linux-armv7l/wheel/funvip/data 2024-05-17T10:33:24,790 copying build/lib/funvip/data/Option_manager.xlsx -> build/bdist.linux-armv7l/wheel/funvip/data 2024-05-17T10:33:24,793 copying build/lib/funvip/data/__init__.py -> build/bdist.linux-armv7l/wheel/funvip/data 2024-05-17T10:33:24,795 creating build/bdist.linux-armv7l/wheel/funvip/preset 2024-05-17T10:33:24,795 copying build/lib/funvip/preset/accurate.yaml -> build/bdist.linux-armv7l/wheel/funvip/preset 2024-05-17T10:33:24,797 copying build/lib/funvip/preset/fast.yaml -> build/bdist.linux-armv7l/wheel/funvip/preset 2024-05-17T10:33:24,800 creating build/bdist.linux-armv7l/wheel/funvip/src 2024-05-17T10:33:24,801 copying build/lib/funvip/src/logger.py -> build/bdist.linux-armv7l/wheel/funvip/src 2024-05-17T10:33:24,803 copying build/lib/funvip/src/dataset.py -> build/bdist.linux-armv7l/wheel/funvip/src 2024-05-17T10:33:24,805 copying build/lib/funvip/src/tree_interpretation.py -> build/bdist.linux-armv7l/wheel/funvip/src 2024-05-17T10:33:24,809 copying build/lib/funvip/src/reporter.py -> build/bdist.linux-armv7l/wheel/funvip/src 2024-05-17T10:33:24,811 copying build/lib/funvip/src/logics.py -> build/bdist.linux-armv7l/wheel/funvip/src 2024-05-17T10:33:24,813 copying build/lib/funvip/src/validation.py -> build/bdist.linux-armv7l/wheel/funvip/src 2024-05-17T10:33:24,815 copying build/lib/funvip/src/validate_input.py -> build/bdist.linux-armv7l/wheel/funvip/src 2024-05-17T10:33:24,818 copying build/lib/funvip/src/validate_option.py -> build/bdist.linux-armv7l/wheel/funvip/src 2024-05-17T10:33:24,821 copying build/lib/funvip/src/initialize.py -> build/bdist.linux-armv7l/wheel/funvip/src 2024-05-17T10:33:24,824 copying build/lib/funvip/src/hasher.py -> build/bdist.linux-armv7l/wheel/funvip/src 2024-05-17T10:33:24,826 copying build/lib/funvip/src/save.py -> build/bdist.linux-armv7l/wheel/funvip/src 2024-05-17T10:33:24,828 copying build/lib/funvip/src/command.py -> build/bdist.linux-armv7l/wheel/funvip/src 2024-05-17T10:33:24,835 copying build/lib/funvip/src/concatenate.py -> build/bdist.linux-armv7l/wheel/funvip/src 2024-05-17T10:33:24,837 copying build/lib/funvip/src/patch.py -> build/bdist.linux-armv7l/wheel/funvip/src 2024-05-17T10:33:24,840 copying build/lib/funvip/src/ext.py -> build/bdist.linux-armv7l/wheel/funvip/src 2024-05-17T10:33:24,842 copying build/lib/funvip/src/opt_generator.py -> build/bdist.linux-armv7l/wheel/funvip/src 2024-05-17T10:33:24,844 copying build/lib/funvip/src/tree_interpretation_pipe.py -> build/bdist.linux-armv7l/wheel/funvip/src 2024-05-17T10:33:24,847 copying build/lib/funvip/src/__init__.py -> build/bdist.linux-armv7l/wheel/funvip/src 2024-05-17T10:33:24,848 copying build/lib/funvip/src/ncbi.py -> build/bdist.linux-armv7l/wheel/funvip/src 2024-05-17T10:33:24,851 copying build/lib/funvip/src/tree.py -> build/bdist.linux-armv7l/wheel/funvip/src 2024-05-17T10:33:24,853 copying build/lib/funvip/src/trim.py -> build/bdist.linux-armv7l/wheel/funvip/src 2024-05-17T10:33:24,855 copying build/lib/funvip/src/search.py -> build/bdist.linux-armv7l/wheel/funvip/src 2024-05-17T10:33:24,857 copying build/lib/funvip/src/align.py -> build/bdist.linux-armv7l/wheel/funvip/src 2024-05-17T10:33:24,859 copying build/lib/funvip/src/version.py -> build/bdist.linux-armv7l/wheel/funvip/src 2024-05-17T10:33:24,861 copying build/lib/funvip/src/cluster.py -> build/bdist.linux-armv7l/wheel/funvip/src 2024-05-17T10:33:24,863 copying build/lib/funvip/src/modeltest.py -> build/bdist.linux-armv7l/wheel/funvip/src 2024-05-17T10:33:24,866 copying build/lib/funvip/src/tool.py -> build/bdist.linux-armv7l/wheel/funvip/src 2024-05-17T10:33:24,868 copying build/lib/funvip/__init__.py -> build/bdist.linux-armv7l/wheel/funvip 2024-05-17T10:33:24,870 creating build/bdist.linux-armv7l/wheel/funvip/external 2024-05-17T10:33:24,871 copying build/lib/funvip/external/MAFFT_Windows.zip -> build/bdist.linux-armv7l/wheel/funvip/external 2024-05-17T10:33:25,315 copying build/lib/funvip/external/MAFFT_LICENSE -> build/bdist.linux-armv7l/wheel/funvip/external 2024-05-17T10:33:25,318 creating build/bdist.linux-armv7l/wheel/funvip/external/RAxML_Windows 2024-05-17T10:33:25,319 copying build/lib/funvip/external/RAxML_Windows/README -> build/bdist.linux-armv7l/wheel/funvip/external/RAxML_Windows 2024-05-17T10:33:25,321 copying build/lib/funvip/external/RAxML_Windows/GPL-3.0.txt -> build/bdist.linux-armv7l/wheel/funvip/external/RAxML_Windows 2024-05-17T10:33:25,324 copying build/lib/funvip/external/RAxML_Windows/raxmlHPC-PTHREADS-AVX2.exe -> build/bdist.linux-armv7l/wheel/funvip/external/RAxML_Windows 2024-05-17T10:33:25,352 creating build/bdist.linux-armv7l/wheel/funvip/external/FastTree_Windows 2024-05-17T10:33:25,353 copying build/lib/funvip/external/FastTree_Windows/FastTree.exe -> build/bdist.linux-armv7l/wheel/funvip/external/FastTree_Windows 2024-05-17T10:33:25,360 creating build/bdist.linux-armv7l/wheel/funvip/external/mmseqs_Windows 2024-05-17T10:33:25,362 creating build/bdist.linux-armv7l/wheel/funvip/external/mmseqs_Windows/util 2024-05-17T10:33:25,363 copying build/lib/funvip/external/mmseqs_Windows/util/bash-completion.sh -> build/bdist.linux-armv7l/wheel/funvip/external/mmseqs_Windows/util 2024-05-17T10:33:25,365 copying build/lib/funvip/external/mmseqs_Windows/LICENSE.md -> build/bdist.linux-armv7l/wheel/funvip/external/mmseqs_Windows 2024-05-17T10:33:25,368 creating build/bdist.linux-armv7l/wheel/funvip/external/mmseqs_Windows/examples 2024-05-17T10:33:25,369 copying build/lib/funvip/external/mmseqs_Windows/examples/QUERY.fasta -> build/bdist.linux-armv7l/wheel/funvip/external/mmseqs_Windows/examples 2024-05-17T10:33:25,377 creating build/bdist.linux-armv7l/wheel/funvip/external/mmseqs_Windows/matrices 2024-05-17T10:33:25,378 copying build/lib/funvip/external/mmseqs_Windows/matrices/nucleotide.out -> build/bdist.linux-armv7l/wheel/funvip/external/mmseqs_Windows/matrices 2024-05-17T10:33:25,380 copying build/lib/funvip/external/mmseqs_Windows/matrices/blosum60.out -> build/bdist.linux-armv7l/wheel/funvip/external/mmseqs_Windows/matrices 2024-05-17T10:33:25,382 copying build/lib/funvip/external/mmseqs_Windows/matrices/VTML120.out -> build/bdist.linux-armv7l/wheel/funvip/external/mmseqs_Windows/matrices 2024-05-17T10:33:25,384 copying build/lib/funvip/external/mmseqs_Windows/matrices/PAM110.out -> build/bdist.linux-armv7l/wheel/funvip/external/mmseqs_Windows/matrices 2024-05-17T10:33:25,386 copying build/lib/funvip/external/mmseqs_Windows/matrices/PAM90.out -> build/bdist.linux-armv7l/wheel/funvip/external/mmseqs_Windows/matrices 2024-05-17T10:33:25,388 copying build/lib/funvip/external/mmseqs_Windows/matrices/blosum65.out -> build/bdist.linux-armv7l/wheel/funvip/external/mmseqs_Windows/matrices 2024-05-17T10:33:25,390 copying build/lib/funvip/external/mmseqs_Windows/matrices/blosum35.out -> build/bdist.linux-armv7l/wheel/funvip/external/mmseqs_Windows/matrices 2024-05-17T10:33:25,392 copying build/lib/funvip/external/mmseqs_Windows/matrices/PAM120.out -> build/bdist.linux-armv7l/wheel/funvip/external/mmseqs_Windows/matrices 2024-05-17T10:33:25,393 copying build/lib/funvip/external/mmseqs_Windows/matrices/PAM20.out -> build/bdist.linux-armv7l/wheel/funvip/external/mmseqs_Windows/matrices 2024-05-17T10:33:25,395 copying build/lib/funvip/external/mmseqs_Windows/matrices/blosum62.out -> build/bdist.linux-armv7l/wheel/funvip/external/mmseqs_Windows/matrices 2024-05-17T10:33:25,397 copying build/lib/funvip/external/mmseqs_Windows/matrices/blosum80.out -> build/bdist.linux-armv7l/wheel/funvip/external/mmseqs_Windows/matrices 2024-05-17T10:33:25,399 copying build/lib/funvip/external/mmseqs_Windows/matrices/PAM50.out -> build/bdist.linux-armv7l/wheel/funvip/external/mmseqs_Windows/matrices 2024-05-17T10:33:25,401 copying build/lib/funvip/external/mmseqs_Windows/matrices/blosum45.out -> build/bdist.linux-armv7l/wheel/funvip/external/mmseqs_Windows/matrices 2024-05-17T10:33:25,402 copying build/lib/funvip/external/mmseqs_Windows/matrices/VTML160.out -> build/bdist.linux-armv7l/wheel/funvip/external/mmseqs_Windows/matrices 2024-05-17T10:33:25,404 copying build/lib/funvip/external/mmseqs_Windows/matrices/PAM160.out -> build/bdist.linux-armv7l/wheel/funvip/external/mmseqs_Windows/matrices 2024-05-17T10:33:25,406 copying build/lib/funvip/external/mmseqs_Windows/matrices/PAM180.out -> build/bdist.linux-armv7l/wheel/funvip/external/mmseqs_Windows/matrices 2024-05-17T10:33:25,408 copying build/lib/funvip/external/mmseqs_Windows/matrices/blosum50.out -> build/bdist.linux-armv7l/wheel/funvip/external/mmseqs_Windows/matrices 2024-05-17T10:33:25,410 copying build/lib/funvip/external/mmseqs_Windows/matrices/PAM30.out -> build/bdist.linux-armv7l/wheel/funvip/external/mmseqs_Windows/matrices 2024-05-17T10:33:25,411 copying build/lib/funvip/external/mmseqs_Windows/matrices/PAM10.out -> build/bdist.linux-armv7l/wheel/funvip/external/mmseqs_Windows/matrices 2024-05-17T10:33:25,413 copying build/lib/funvip/external/mmseqs_Windows/matrices/PAM40.out -> build/bdist.linux-armv7l/wheel/funvip/external/mmseqs_Windows/matrices 2024-05-17T10:33:25,415 copying build/lib/funvip/external/mmseqs_Windows/matrices/PAM190.out -> build/bdist.linux-armv7l/wheel/funvip/external/mmseqs_Windows/matrices 2024-05-17T10:33:25,416 copying build/lib/funvip/external/mmseqs_Windows/matrices/blosum70.out -> build/bdist.linux-armv7l/wheel/funvip/external/mmseqs_Windows/matrices 2024-05-17T10:33:25,418 copying build/lib/funvip/external/mmseqs_Windows/matrices/PAM170.out -> build/bdist.linux-armv7l/wheel/funvip/external/mmseqs_Windows/matrices 2024-05-17T10:33:25,420 copying build/lib/funvip/external/mmseqs_Windows/matrices/blosum55.out -> build/bdist.linux-armv7l/wheel/funvip/external/mmseqs_Windows/matrices 2024-05-17T10:33:25,422 copying build/lib/funvip/external/mmseqs_Windows/matrices/blosum90.out -> build/bdist.linux-armv7l/wheel/funvip/external/mmseqs_Windows/matrices 2024-05-17T10:33:25,424 copying build/lib/funvip/external/mmseqs_Windows/matrices/PAM70.out -> build/bdist.linux-armv7l/wheel/funvip/external/mmseqs_Windows/matrices 2024-05-17T10:33:25,426 copying build/lib/funvip/external/mmseqs_Windows/matrices/blosum95.out -> build/bdist.linux-armv7l/wheel/funvip/external/mmseqs_Windows/matrices 2024-05-17T10:33:25,427 copying build/lib/funvip/external/mmseqs_Windows/matrices/VTML40.out -> build/bdist.linux-armv7l/wheel/funvip/external/mmseqs_Windows/matrices 2024-05-17T10:33:25,429 copying build/lib/funvip/external/mmseqs_Windows/matrices/PAM150.out -> build/bdist.linux-armv7l/wheel/funvip/external/mmseqs_Windows/matrices 2024-05-17T10:33:25,431 copying build/lib/funvip/external/mmseqs_Windows/matrices/blosum85.out -> build/bdist.linux-armv7l/wheel/funvip/external/mmseqs_Windows/matrices 2024-05-17T10:33:25,433 copying build/lib/funvip/external/mmseqs_Windows/matrices/VTML20.out -> build/bdist.linux-armv7l/wheel/funvip/external/mmseqs_Windows/matrices 2024-05-17T10:33:25,435 copying build/lib/funvip/external/mmseqs_Windows/matrices/PAM100.out -> build/bdist.linux-armv7l/wheel/funvip/external/mmseqs_Windows/matrices 2024-05-17T10:33:25,437 copying build/lib/funvip/external/mmseqs_Windows/matrices/blosum75.out -> build/bdist.linux-armv7l/wheel/funvip/external/mmseqs_Windows/matrices 2024-05-17T10:33:25,439 copying build/lib/funvip/external/mmseqs_Windows/matrices/PAM80.out -> build/bdist.linux-armv7l/wheel/funvip/external/mmseqs_Windows/matrices 2024-05-17T10:33:25,440 copying build/lib/funvip/external/mmseqs_Windows/matrices/PAM60.out -> build/bdist.linux-armv7l/wheel/funvip/external/mmseqs_Windows/matrices 2024-05-17T10:33:25,442 copying build/lib/funvip/external/mmseqs_Windows/matrices/PAM130.out -> build/bdist.linux-armv7l/wheel/funvip/external/mmseqs_Windows/matrices 2024-05-17T10:33:25,444 copying build/lib/funvip/external/mmseqs_Windows/matrices/blosum100.out -> build/bdist.linux-armv7l/wheel/funvip/external/mmseqs_Windows/matrices 2024-05-17T10:33:25,446 copying build/lib/funvip/external/mmseqs_Windows/matrices/PAM140.out -> build/bdist.linux-armv7l/wheel/funvip/external/mmseqs_Windows/matrices 2024-05-17T10:33:25,447 copying build/lib/funvip/external/mmseqs_Windows/matrices/VTML10.out -> build/bdist.linux-armv7l/wheel/funvip/external/mmseqs_Windows/matrices 2024-05-17T10:33:25,449 copying build/lib/funvip/external/mmseqs_Windows/matrices/blosum40.out -> build/bdist.linux-armv7l/wheel/funvip/external/mmseqs_Windows/matrices 2024-05-17T10:33:25,451 copying build/lib/funvip/external/mmseqs_Windows/matrices/blosum30.out -> build/bdist.linux-armv7l/wheel/funvip/external/mmseqs_Windows/matrices 2024-05-17T10:33:25,453 copying build/lib/funvip/external/mmseqs_Windows/matrices/VTML80.out -> build/bdist.linux-armv7l/wheel/funvip/external/mmseqs_Windows/matrices 2024-05-17T10:33:25,456 creating build/bdist.linux-armv7l/wheel/funvip/external/mmseqs_Windows/bin 2024-05-17T10:33:25,457 copying build/lib/funvip/external/mmseqs_Windows/bin/cyggcc_s-seh-1.dll -> build/bdist.linux-armv7l/wheel/funvip/external/mmseqs_Windows/bin 2024-05-17T10:33:25,461 copying build/lib/funvip/external/mmseqs_Windows/bin/mmseqs.exe -> build/bdist.linux-armv7l/wheel/funvip/external/mmseqs_Windows/bin 2024-05-17T10:33:25,651 copying build/lib/funvip/external/mmseqs_Windows/bin/cyggomp-1.dll -> build/bdist.linux-armv7l/wheel/funvip/external/mmseqs_Windows/bin 2024-05-17T10:33:25,707 copying build/lib/funvip/external/mmseqs_Windows/bin/cygbz2-1.dll -> build/bdist.linux-armv7l/wheel/funvip/external/mmseqs_Windows/bin 2024-05-17T10:33:25,710 copying build/lib/funvip/external/mmseqs_Windows/bin/cygstdc++-6.dll -> build/bdist.linux-armv7l/wheel/funvip/external/mmseqs_Windows/bin 2024-05-17T10:33:25,744 copying build/lib/funvip/external/mmseqs_Windows/bin/cygz.dll -> build/bdist.linux-armv7l/wheel/funvip/external/mmseqs_Windows/bin 2024-05-17T10:33:25,747 copying build/lib/funvip/external/mmseqs_Windows/bin/busybox.exe -> build/bdist.linux-armv7l/wheel/funvip/external/mmseqs_Windows/bin 2024-05-17T10:33:25,762 copying build/lib/funvip/external/mmseqs_Windows/bin/cygwin1.dll -> build/bdist.linux-armv7l/wheel/funvip/external/mmseqs_Windows/bin 2024-05-17T10:33:25,820 copying build/lib/funvip/external/mmseqs_Windows/mmseqs.bat -> build/bdist.linux-armv7l/wheel/funvip/external/mmseqs_Windows 2024-05-17T10:33:25,822 copying build/lib/funvip/external/mmseqs_Windows/README.md -> build/bdist.linux-armv7l/wheel/funvip/external/mmseqs_Windows 2024-05-17T10:33:25,825 creating build/bdist.linux-armv7l/wheel/funvip/external/Gblocks_Windows_0.91b 2024-05-17T10:33:25,826 creating build/bdist.linux-armv7l/wheel/funvip/external/Gblocks_Windows_0.91b/Gblocks_0.91b 2024-05-17T10:33:25,827 copying build/lib/funvip/external/Gblocks_Windows_0.91b/Gblocks_0.91b/nad3.pir -> build/bdist.linux-armv7l/wheel/funvip/external/Gblocks_Windows_0.91b/Gblocks_0.91b 2024-05-17T10:33:25,830 creating build/bdist.linux-armv7l/wheel/funvip/external/Gblocks_Windows_0.91b/Gblocks_0.91b/Documentation 2024-05-17T10:33:25,831 copying build/lib/funvip/external/Gblocks_Windows_0.91b/Gblocks_0.91b/Documentation/Gblocks_documentation.html -> build/bdist.linux-armv7l/wheel/funvip/external/Gblocks_Windows_0.91b/Gblocks_0.91b/Documentation 2024-05-17T10:33:25,834 copying build/lib/funvip/external/Gblocks_Windows_0.91b/Gblocks_0.91b/paths -> build/bdist.linux-armv7l/wheel/funvip/external/Gblocks_Windows_0.91b/Gblocks_0.91b 2024-05-17T10:33:25,836 copying build/lib/funvip/external/Gblocks_Windows_0.91b/Gblocks_0.91b/Gblocks.exe -> build/bdist.linux-armv7l/wheel/funvip/external/Gblocks_Windows_0.91b/Gblocks_0.91b 2024-05-17T10:33:25,843 creating build/bdist.linux-armv7l/wheel/funvip/external/Gblocks_Windows_0.91b/Gblocks_0.91b/more_alignments 2024-05-17T10:33:25,844 copying build/lib/funvip/external/Gblocks_Windows_0.91b/Gblocks_0.91b/more_alignments/nad3.pir -> build/bdist.linux-armv7l/wheel/funvip/external/Gblocks_Windows_0.91b/Gblocks_0.91b/more_alignments 2024-05-17T10:33:25,846 copying build/lib/funvip/external/Gblocks_Windows_0.91b/Gblocks_0.91b/more_alignments/cox2.pir -> build/bdist.linux-armv7l/wheel/funvip/external/Gblocks_Windows_0.91b/Gblocks_0.91b/more_alignments 2024-05-17T10:33:25,848 copying build/lib/funvip/external/Gblocks_Windows_0.91b/Gblocks_0.91b/more_alignments/cytb.pir -> build/bdist.linux-armv7l/wheel/funvip/external/Gblocks_Windows_0.91b/Gblocks_0.91b/more_alignments 2024-05-17T10:33:25,850 copying build/lib/funvip/external/Gblocks_Windows_0.91b/Gblocks_0.91b/more_alignments/nad5.pir -> build/bdist.linux-armv7l/wheel/funvip/external/Gblocks_Windows_0.91b/Gblocks_0.91b/more_alignments 2024-05-17T10:33:25,853 copying build/lib/funvip/external/__init__.py -> build/bdist.linux-armv7l/wheel/funvip/external 2024-05-17T10:33:25,855 creating build/bdist.linux-armv7l/wheel/funvip/external/iqtree 2024-05-17T10:33:25,856 copying build/lib/funvip/external/iqtree/example.nex -> build/bdist.linux-armv7l/wheel/funvip/external/iqtree 2024-05-17T10:33:25,858 copying build/lib/funvip/external/iqtree/example.cf -> build/bdist.linux-armv7l/wheel/funvip/external/iqtree 2024-05-17T10:33:25,901 creating build/bdist.linux-armv7l/wheel/funvip/external/iqtree/bin 2024-05-17T10:33:25,902 copying build/lib/funvip/external/iqtree/bin/libiomp5md.dll -> build/bdist.linux-armv7l/wheel/funvip/external/iqtree/bin 2024-05-17T10:33:25,925 copying build/lib/funvip/external/iqtree/bin/iqtree2.exe -> build/bdist.linux-armv7l/wheel/funvip/external/iqtree/bin 2024-05-17T10:33:26,153 copying build/lib/funvip/external/iqtree/bin/iqtree2-click.exe -> build/bdist.linux-armv7l/wheel/funvip/external/iqtree/bin 2024-05-17T10:33:26,337 copying build/lib/funvip/external/iqtree/example.phy -> build/bdist.linux-armv7l/wheel/funvip/external/iqtree 2024-05-17T10:33:26,339 copying build/lib/funvip/external/iqtree/models.nex -> build/bdist.linux-armv7l/wheel/funvip/external/iqtree 2024-05-17T10:33:26,344 creating build/bdist.linux-armv7l/wheel/funvip/external/BLAST_Windows 2024-05-17T10:33:26,346 creating build/bdist.linux-armv7l/wheel/funvip/external/BLAST_Windows/bin 2024-05-17T10:33:26,347 copying build/lib/funvip/external/BLAST_Windows/bin/legacy_blast.pl -> build/bdist.linux-armv7l/wheel/funvip/external/BLAST_Windows/bin 2024-05-17T10:33:26,350 copying build/lib/funvip/external/BLAST_Windows/bin/makeblastdb.exe -> build/bdist.linux-armv7l/wheel/funvip/external/BLAST_Windows/bin 2024-05-17T10:33:26,613 copying build/lib/funvip/external/BLAST_Windows/bin/nghttp2.dll -> build/bdist.linux-armv7l/wheel/funvip/external/BLAST_Windows/bin 2024-05-17T10:33:26,618 copying build/lib/funvip/external/BLAST_Windows/bin/update_blastdb.pl -> build/bdist.linux-armv7l/wheel/funvip/external/BLAST_Windows/bin 2024-05-17T10:33:26,621 copying build/lib/funvip/external/BLAST_Windows/bin/blastn.exe -> build/bdist.linux-armv7l/wheel/funvip/external/BLAST_Windows/bin 2024-05-17T10:33:26,915 copying build/lib/funvip/external/BLAST_Windows/bin/get_species_taxids.sh -> build/bdist.linux-armv7l/wheel/funvip/external/BLAST_Windows/bin 2024-05-17T10:33:26,917 copying build/lib/funvip/external/BLAST_Windows/bin/cleanup-blastdb-volumes.py -> build/bdist.linux-armv7l/wheel/funvip/external/BLAST_Windows/bin 2024-05-17T10:33:26,919 copying build/lib/funvip/external/BLAST_Windows/Uninstall-ncbi-blast-2.12.0+.exe -> build/bdist.linux-armv7l/wheel/funvip/external/BLAST_Windows 2024-05-17T10:33:26,923 creating build/bdist.linux-armv7l/wheel/funvip/external/BLAST_Windows/doc 2024-05-17T10:33:26,924 copying build/lib/funvip/external/BLAST_Windows/doc/README.txt -> build/bdist.linux-armv7l/wheel/funvip/external/BLAST_Windows/doc 2024-05-17T10:33:26,926 creating build/bdist.linux-armv7l/wheel/funvip/external/trimal.v1.4 2024-05-17T10:33:26,928 creating build/bdist.linux-armv7l/wheel/funvip/external/trimal.v1.4/trimAl 2024-05-17T10:33:26,929 copying build/lib/funvip/external/trimal.v1.4/trimAl/README -> build/bdist.linux-armv7l/wheel/funvip/external/trimal.v1.4/trimAl 2024-05-17T10:33:26,930 copying build/lib/funvip/external/trimal.v1.4/trimAl/AUTHORS -> build/bdist.linux-armv7l/wheel/funvip/external/trimal.v1.4/trimAl 2024-05-17T10:33:26,932 copying build/lib/funvip/external/trimal.v1.4/trimAl/LICENSE -> build/bdist.linux-armv7l/wheel/funvip/external/trimal.v1.4/trimAl 2024-05-17T10:33:26,936 creating build/bdist.linux-armv7l/wheel/funvip/external/trimal.v1.4/trimAl/bin 2024-05-17T10:33:26,936 copying build/lib/funvip/external/trimal.v1.4/trimAl/bin/trimal.exe -> build/bdist.linux-armv7l/wheel/funvip/external/trimal.v1.4/trimAl/bin 2024-05-17T10:33:26,945 copying build/lib/funvip/external/trimal.v1.4/trimAl/bin/libstdc++-6.dll -> build/bdist.linux-armv7l/wheel/funvip/external/trimal.v1.4/trimAl/bin 2024-05-17T10:33:26,974 copying build/lib/funvip/external/trimal.v1.4/trimAl/bin/libgcc_s_dw2-1.dll -> build/bdist.linux-armv7l/wheel/funvip/external/trimal.v1.4/trimAl/bin 2024-05-17T10:33:26,995 creating build/bdist.linux-armv7l/wheel/funvip/external/trimal.v1.4/trimAl/scripts 2024-05-17T10:33:26,996 copying build/lib/funvip/external/trimal.v1.4/trimAl/scripts/set_manual_boundaries.py -> build/bdist.linux-armv7l/wheel/funvip/external/trimal.v1.4/trimAl/scripts 2024-05-17T10:33:26,999 copying build/lib/funvip/external/trimal.v1.4/trimAl/scripts/get_sequences_gaps_ratio.py -> build/bdist.linux-armv7l/wheel/funvip/external/trimal.v1.4/trimAl/scripts 2024-05-17T10:33:27,001 copying build/lib/funvip/external/trimal.v1.4/trimAl/scripts/get_sequence_representative_from_alignment.py -> build/bdist.linux-armv7l/wheel/funvip/external/trimal.v1.4/trimAl/scripts 2024-05-17T10:33:27,003 copying build/lib/funvip/external/trimal.v1.4/trimAl/scripts/check_codon_alignments.py -> build/bdist.linux-armv7l/wheel/funvip/external/trimal.v1.4/trimAl/scripts 2024-05-17T10:33:27,005 copying build/lib/funvip/external/trimal.v1.4/trimAl/scripts/compare_trimmed_msas.sh -> build/bdist.linux-armv7l/wheel/funvip/external/trimal.v1.4/trimAl/scripts 2024-05-17T10:33:27,007 copying build/lib/funvip/external/trimal.v1.4/trimAl/scripts/generateRandomAlignmentsUsingAsSeedRealAlignments.py -> build/bdist.linux-armv7l/wheel/funvip/external/trimal.v1.4/trimAl/scripts 2024-05-17T10:33:27,009 copying build/lib/funvip/external/trimal.v1.4/trimAl/scripts/remove_shorter_sequences.py -> build/bdist.linux-armv7l/wheel/funvip/external/trimal.v1.4/trimAl/scripts 2024-05-17T10:33:27,011 copying build/lib/funvip/external/trimal.v1.4/trimAl/scripts/selective_trimming_for_dNdS_analyses.based_neighbours.py -> build/bdist.linux-armv7l/wheel/funvip/external/trimal.v1.4/trimAl/scripts 2024-05-17T10:33:27,014 copying build/lib/funvip/external/trimal.v1.4/trimAl/scripts/generate_trimmed_msas.sh -> build/bdist.linux-armv7l/wheel/funvip/external/trimal.v1.4/trimAl/scripts 2024-05-17T10:33:27,018 creating build/bdist.linux-armv7l/wheel/funvip/external/trimal.v1.4/trimAl/source 2024-05-17T10:33:27,019 copying build/lib/funvip/external/trimal.v1.4/trimAl/source/alignment.o -> build/bdist.linux-armv7l/wheel/funvip/external/trimal.v1.4/trimAl/source 2024-05-17T10:33:27,025 copying build/lib/funvip/external/trimal.v1.4/trimAl/source/alignment.h -> build/bdist.linux-armv7l/wheel/funvip/external/trimal.v1.4/trimAl/source 2024-05-17T10:33:27,027 copying build/lib/funvip/external/trimal.v1.4/trimAl/source/statisticsGaps.o -> build/bdist.linux-armv7l/wheel/funvip/external/trimal.v1.4/trimAl/source 2024-05-17T10:33:27,030 copying build/lib/funvip/external/trimal.v1.4/trimAl/source/statisticsConservation.cpp -> build/bdist.linux-armv7l/wheel/funvip/external/trimal.v1.4/trimAl/source 2024-05-17T10:33:27,032 copying build/lib/funvip/external/trimal.v1.4/trimAl/source/similarityMatrix.o -> build/bdist.linux-armv7l/wheel/funvip/external/trimal.v1.4/trimAl/source 2024-05-17T10:33:27,035 copying build/lib/funvip/external/trimal.v1.4/trimAl/source/autAlignment.cpp -> build/bdist.linux-armv7l/wheel/funvip/external/trimal.v1.4/trimAl/source 2024-05-17T10:33:27,037 copying build/lib/funvip/external/trimal.v1.4/trimAl/source/sequencesMatrix.h -> build/bdist.linux-armv7l/wheel/funvip/external/trimal.v1.4/trimAl/source 2024-05-17T10:33:27,039 copying build/lib/funvip/external/trimal.v1.4/trimAl/source/alignment.cpp -> build/bdist.linux-armv7l/wheel/funvip/external/trimal.v1.4/trimAl/source 2024-05-17T10:33:27,044 copying build/lib/funvip/external/trimal.v1.4/trimAl/source/statisticsFiles.h -> build/bdist.linux-armv7l/wheel/funvip/external/trimal.v1.4/trimAl/source 2024-05-17T10:33:27,046 copying build/lib/funvip/external/trimal.v1.4/trimAl/source/sequencesMatrix.o -> build/bdist.linux-armv7l/wheel/funvip/external/trimal.v1.4/trimAl/source 2024-05-17T10:33:27,048 copying build/lib/funvip/external/trimal.v1.4/trimAl/source/similarityMatrix.h -> build/bdist.linux-armv7l/wheel/funvip/external/trimal.v1.4/trimAl/source 2024-05-17T10:33:27,050 copying build/lib/funvip/external/trimal.v1.4/trimAl/source/rwAlignment.o -> build/bdist.linux-armv7l/wheel/funvip/external/trimal.v1.4/trimAl/source 2024-05-17T10:33:27,053 copying build/lib/funvip/external/trimal.v1.4/trimAl/source/statisticsConservation.o -> build/bdist.linux-armv7l/wheel/funvip/external/trimal.v1.4/trimAl/source 2024-05-17T10:33:27,056 copying build/lib/funvip/external/trimal.v1.4/trimAl/source/utils.cpp -> build/bdist.linux-armv7l/wheel/funvip/external/trimal.v1.4/trimAl/source 2024-05-17T10:33:27,058 copying build/lib/funvip/external/trimal.v1.4/trimAl/source/values.h -> build/bdist.linux-armv7l/wheel/funvip/external/trimal.v1.4/trimAl/source 2024-05-17T10:33:27,061 copying build/lib/funvip/external/trimal.v1.4/trimAl/source/sequencesMatrix.cpp -> build/bdist.linux-armv7l/wheel/funvip/external/trimal.v1.4/trimAl/source 2024-05-17T10:33:27,063 copying build/lib/funvip/external/trimal.v1.4/trimAl/source/defines.h -> build/bdist.linux-armv7l/wheel/funvip/external/trimal.v1.4/trimAl/source 2024-05-17T10:33:27,066 copying build/lib/funvip/external/trimal.v1.4/trimAl/source/statisticsGaps.cpp -> build/bdist.linux-armv7l/wheel/funvip/external/trimal.v1.4/trimAl/source 2024-05-17T10:33:27,068 copying build/lib/funvip/external/trimal.v1.4/trimAl/source/utils.h -> build/bdist.linux-armv7l/wheel/funvip/external/trimal.v1.4/trimAl/source 2024-05-17T10:33:27,070 copying build/lib/funvip/external/trimal.v1.4/trimAl/source/main.cpp -> build/bdist.linux-armv7l/wheel/funvip/external/trimal.v1.4/trimAl/source 2024-05-17T10:33:27,074 copying build/lib/funvip/external/trimal.v1.4/trimAl/source/makefile.MacOS -> build/bdist.linux-armv7l/wheel/funvip/external/trimal.v1.4/trimAl/source 2024-05-17T10:33:27,076 copying build/lib/funvip/external/trimal.v1.4/trimAl/source/statisticsGaps.h -> build/bdist.linux-armv7l/wheel/funvip/external/trimal.v1.4/trimAl/source 2024-05-17T10:33:27,078 copying build/lib/funvip/external/trimal.v1.4/trimAl/source/statAl.cpp -> build/bdist.linux-armv7l/wheel/funvip/external/trimal.v1.4/trimAl/source 2024-05-17T10:33:27,081 copying build/lib/funvip/external/trimal.v1.4/trimAl/source/makefile -> build/bdist.linux-armv7l/wheel/funvip/external/trimal.v1.4/trimAl/source 2024-05-17T10:33:27,083 copying build/lib/funvip/external/trimal.v1.4/trimAl/source/statisticsFiles.cpp -> build/bdist.linux-armv7l/wheel/funvip/external/trimal.v1.4/trimAl/source 2024-05-17T10:33:27,085 copying build/lib/funvip/external/trimal.v1.4/trimAl/source/rwAlignment.cpp -> build/bdist.linux-armv7l/wheel/funvip/external/trimal.v1.4/trimAl/source 2024-05-17T10:33:27,088 copying build/lib/funvip/external/trimal.v1.4/trimAl/source/similarityMatrix.cpp -> build/bdist.linux-armv7l/wheel/funvip/external/trimal.v1.4/trimAl/source 2024-05-17T10:33:27,091 copying build/lib/funvip/external/trimal.v1.4/trimAl/source/utils.o -> build/bdist.linux-armv7l/wheel/funvip/external/trimal.v1.4/trimAl/source 2024-05-17T10:33:27,093 copying build/lib/funvip/external/trimal.v1.4/trimAl/source/compareFiles.h -> build/bdist.linux-armv7l/wheel/funvip/external/trimal.v1.4/trimAl/source 2024-05-17T10:33:27,095 copying build/lib/funvip/external/trimal.v1.4/trimAl/source/compareFiles.cpp -> build/bdist.linux-armv7l/wheel/funvip/external/trimal.v1.4/trimAl/source 2024-05-17T10:33:27,097 copying build/lib/funvip/external/trimal.v1.4/trimAl/source/statal.exe -> build/bdist.linux-armv7l/wheel/funvip/external/trimal.v1.4/trimAl/source 2024-05-17T10:33:27,104 copying build/lib/funvip/external/trimal.v1.4/trimAl/source/autAlignment.o -> build/bdist.linux-armv7l/wheel/funvip/external/trimal.v1.4/trimAl/source 2024-05-17T10:33:27,107 copying build/lib/funvip/external/trimal.v1.4/trimAl/source/readAl.cpp -> build/bdist.linux-armv7l/wheel/funvip/external/trimal.v1.4/trimAl/source 2024-05-17T10:33:27,109 copying build/lib/funvip/external/trimal.v1.4/trimAl/source/statisticsConservation.h -> build/bdist.linux-armv7l/wheel/funvip/external/trimal.v1.4/trimAl/source 2024-05-17T10:33:27,111 copying build/lib/funvip/external/trimal.v1.4/trimAl/source/compareFiles.o -> build/bdist.linux-armv7l/wheel/funvip/external/trimal.v1.4/trimAl/source 2024-05-17T10:33:27,113 copying build/lib/funvip/external/trimal.v1.4/trimAl/source/readal.exe -> build/bdist.linux-armv7l/wheel/funvip/external/trimal.v1.4/trimAl/source 2024-05-17T10:33:27,120 copying build/lib/funvip/external/trimal.v1.4/trimAl/CHANGELOG -> build/bdist.linux-armv7l/wheel/funvip/external/trimal.v1.4/trimAl 2024-05-17T10:33:27,122 creating build/bdist.linux-armv7l/wheel/funvip/test_dataset 2024-05-17T10:33:27,124 creating build/bdist.linux-armv7l/wheel/funvip/test_dataset/terrei 2024-05-17T10:33:27,125 creating build/bdist.linux-armv7l/wheel/funvip/test_dataset/terrei/DB 2024-05-17T10:33:27,126 copying build/lib/funvip/test_dataset/terrei/DB/FunVIP_Aspergillus_db.xlsx -> build/bdist.linux-armv7l/wheel/funvip/test_dataset/terrei/DB 2024-05-17T10:33:27,129 copying build/lib/funvip/test_dataset/terrei/preset.yaml -> build/bdist.linux-armv7l/wheel/funvip/test_dataset/terrei 2024-05-17T10:33:27,131 creating build/bdist.linux-armv7l/wheel/funvip/test_dataset/terrei/Query 2024-05-17T10:33:27,132 copying build/lib/funvip/test_dataset/terrei/Query/FunVIP_Aspergillus_query.xlsx -> build/bdist.linux-armv7l/wheel/funvip/test_dataset/terrei/Query 2024-05-17T10:33:27,135 creating build/bdist.linux-armv7l/wheel/funvip/test_dataset/penicillium 2024-05-17T10:33:27,136 creating build/bdist.linux-armv7l/wheel/funvip/test_dataset/penicillium/DB 2024-05-17T10:33:27,137 copying build/lib/funvip/test_dataset/penicillium/DB/DB_Penicillium.xlsx -> build/bdist.linux-armv7l/wheel/funvip/test_dataset/penicillium/DB 2024-05-17T10:33:27,145 copying build/lib/funvip/test_dataset/penicillium/preset.yaml -> build/bdist.linux-armv7l/wheel/funvip/test_dataset/penicillium 2024-05-17T10:33:27,147 copying build/lib/funvip/test_dataset/penicillium/Options.config -> build/bdist.linux-armv7l/wheel/funvip/test_dataset/penicillium 2024-05-17T10:33:27,150 creating build/bdist.linux-armv7l/wheel/funvip/test_dataset/penicillium/Query 2024-05-17T10:33:27,151 copying build/lib/funvip/test_dataset/penicillium/Query/Query.xlsx -> build/bdist.linux-armv7l/wheel/funvip/test_dataset/penicillium/Query 2024-05-17T10:33:27,154 running install_egg_info 2024-05-17T10:33:27,158 Copying FunVIP.egg-info to build/bdist.linux-armv7l/wheel/FunVIP-0.3.21-py3.11.egg-info 2024-05-17T10:33:27,169 running install_scripts 2024-05-17T10:33:27,189 creating build/bdist.linux-armv7l/wheel/FunVIP-0.3.21.dist-info/WHEEL 2024-05-17T10:33:27,191 creating '/tmp/pip-wheel-r8a8upql/.tmp-cxauedu8/FunVIP-0.3.21-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2024-05-17T10:33:27,195 adding 'funvip/FunVIP_GUI.py' 2024-05-17T10:33:27,197 adding 'funvip/__init__.py' 2024-05-17T10:33:27,198 adding 'funvip/main.py' 2024-05-17T10:33:27,202 adding 'funvip/data/Option_manager.xlsx' 2024-05-17T10:33:27,203 adding 'funvip/data/__init__.py' 2024-05-17T10:33:27,211 adding 'funvip/data/genus_line.txt' 2024-05-17T10:33:27,218 adding 'funvip/external/MAFFT_LICENSE' 2024-05-17T10:33:30,324 adding 'funvip/external/MAFFT_Windows.zip' 2024-05-17T10:33:30,492 adding 'funvip/external/__init__.py' 2024-05-17T10:33:30,501 adding 'funvip/external/BLAST_Windows/Uninstall-ncbi-blast-2.12.0+.exe' 2024-05-17T10:33:33,975 adding 'funvip/external/BLAST_Windows/bin/blastn.exe' 2024-05-17T10:33:34,094 adding 'funvip/external/BLAST_Windows/bin/cleanup-blastdb-volumes.py' 2024-05-17T10:33:34,095 adding 'funvip/external/BLAST_Windows/bin/get_species_taxids.sh' 2024-05-17T10:33:34,100 adding 'funvip/external/BLAST_Windows/bin/legacy_blast.pl' 2024-05-17T10:33:36,680 adding 'funvip/external/BLAST_Windows/bin/makeblastdb.exe' 2024-05-17T10:33:36,798 adding 'funvip/external/BLAST_Windows/bin/nghttp2.dll' 2024-05-17T10:33:36,822 adding 'funvip/external/BLAST_Windows/bin/update_blastdb.pl' 2024-05-17T10:33:36,860 adding 'funvip/external/BLAST_Windows/doc/README.txt' 2024-05-17T10:33:36,917 adding 'funvip/external/FastTree_Windows/FastTree.exe' 2024-05-17T10:33:37,868 adding 'funvip/external/Gblocks_Windows_0.91b/Gblocks_0.91b/Gblocks.exe' 2024-05-17T10:33:38,154 adding 'funvip/external/Gblocks_Windows_0.91b/Gblocks_0.91b/nad3.pir' 2024-05-17T10:33:38,398 adding 'funvip/external/Gblocks_Windows_0.91b/Gblocks_0.91b/paths' 2024-05-17T10:33:38,715 adding 'funvip/external/Gblocks_Windows_0.91b/Gblocks_0.91b/Documentation/Gblocks_documentation.html' 2024-05-17T10:33:38,733 adding 'funvip/external/Gblocks_Windows_0.91b/Gblocks_0.91b/more_alignments/cox2.pir' 2024-05-17T10:33:38,737 adding 'funvip/external/Gblocks_Windows_0.91b/Gblocks_0.91b/more_alignments/cytb.pir' 2024-05-17T10:33:38,740 adding 'funvip/external/Gblocks_Windows_0.91b/Gblocks_0.91b/more_alignments/nad3.pir' 2024-05-17T10:33:38,747 adding 'funvip/external/Gblocks_Windows_0.91b/Gblocks_0.91b/more_alignments/nad5.pir' 2024-05-17T10:33:38,761 adding 'funvip/external/RAxML_Windows/GPL-3.0.txt' 2024-05-17T10:33:38,763 adding 'funvip/external/RAxML_Windows/README' 2024-05-17T10:33:39,095 adding 'funvip/external/RAxML_Windows/raxmlHPC-PTHREADS-AVX2.exe' 2024-05-17T10:33:39,186 adding 'funvip/external/iqtree/example.cf' 2024-05-17T10:33:39,201 adding 'funvip/external/iqtree/example.nex' 2024-05-17T10:33:39,214 adding 'funvip/external/iqtree/example.phy' 2024-05-17T10:33:39,245 adding 'funvip/external/iqtree/models.nex' 2024-05-17T10:33:41,337 adding 'funvip/external/iqtree/bin/iqtree2-click.exe' 2024-05-17T10:33:43,502 adding 'funvip/external/iqtree/bin/iqtree2.exe' 2024-05-17T10:33:43,802 adding 'funvip/external/iqtree/bin/libiomp5md.dll' 2024-05-17T10:33:43,815 adding 'funvip/external/mmseqs_Windows/LICENSE.md' 2024-05-17T10:33:43,818 adding 'funvip/external/mmseqs_Windows/README.md' 2024-05-17T10:33:43,819 adding 'funvip/external/mmseqs_Windows/mmseqs.bat' 2024-05-17T10:33:43,951 adding 'funvip/external/mmseqs_Windows/bin/busybox.exe' 2024-05-17T10:33:43,965 adding 'funvip/external/mmseqs_Windows/bin/cygbz2-1.dll' 2024-05-17T10:33:43,979 adding 'funvip/external/mmseqs_Windows/bin/cyggcc_s-seh-1.dll' 2024-05-17T10:33:44,021 adding 'funvip/external/mmseqs_Windows/bin/cyggomp-1.dll' 2024-05-17T10:33:44,285 adding 'funvip/external/mmseqs_Windows/bin/cygstdc++-6.dll' 2024-05-17T10:33:44,890 adding 'funvip/external/mmseqs_Windows/bin/cygwin1.dll' 2024-05-17T10:33:44,927 adding 'funvip/external/mmseqs_Windows/bin/cygz.dll' 2024-05-17T10:33:48,246 adding 'funvip/external/mmseqs_Windows/bin/mmseqs.exe' 2024-05-17T10:33:48,369 adding 'funvip/external/mmseqs_Windows/examples/QUERY.fasta' 2024-05-17T10:33:48,374 adding 'funvip/external/mmseqs_Windows/matrices/PAM10.out' 2024-05-17T10:33:48,375 adding 'funvip/external/mmseqs_Windows/matrices/PAM100.out' 2024-05-17T10:33:48,376 adding 'funvip/external/mmseqs_Windows/matrices/PAM110.out' 2024-05-17T10:33:48,377 adding 'funvip/external/mmseqs_Windows/matrices/PAM120.out' 2024-05-17T10:33:48,379 adding 'funvip/external/mmseqs_Windows/matrices/PAM130.out' 2024-05-17T10:33:48,380 adding 'funvip/external/mmseqs_Windows/matrices/PAM140.out' 2024-05-17T10:33:48,381 adding 'funvip/external/mmseqs_Windows/matrices/PAM150.out' 2024-05-17T10:33:48,382 adding 'funvip/external/mmseqs_Windows/matrices/PAM160.out' 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'funvip/external/mmseqs_Windows/matrices/blosum55.out' 2024-05-17T10:33:48,417 adding 'funvip/external/mmseqs_Windows/matrices/blosum60.out' 2024-05-17T10:33:48,419 adding 'funvip/external/mmseqs_Windows/matrices/blosum62.out' 2024-05-17T10:33:48,420 adding 'funvip/external/mmseqs_Windows/matrices/blosum65.out' 2024-05-17T10:33:48,422 adding 'funvip/external/mmseqs_Windows/matrices/blosum70.out' 2024-05-17T10:33:48,423 adding 'funvip/external/mmseqs_Windows/matrices/blosum75.out' 2024-05-17T10:33:48,425 adding 'funvip/external/mmseqs_Windows/matrices/blosum80.out' 2024-05-17T10:33:48,426 adding 'funvip/external/mmseqs_Windows/matrices/blosum85.out' 2024-05-17T10:33:48,427 adding 'funvip/external/mmseqs_Windows/matrices/blosum90.out' 2024-05-17T10:33:48,429 adding 'funvip/external/mmseqs_Windows/matrices/blosum95.out' 2024-05-17T10:33:48,430 adding 'funvip/external/mmseqs_Windows/matrices/nucleotide.out' 2024-05-17T10:33:48,432 adding 'funvip/external/mmseqs_Windows/util/bash-completion.sh' 2024-05-17T10:33:48,434 adding 'funvip/external/trimal.v1.4/trimAl/AUTHORS' 2024-05-17T10:33:48,435 adding 'funvip/external/trimal.v1.4/trimAl/CHANGELOG' 2024-05-17T10:33:48,442 adding 'funvip/external/trimal.v1.4/trimAl/LICENSE' 2024-05-17T10:33:48,443 adding 'funvip/external/trimal.v1.4/trimAl/README' 2024-05-17T10:33:48,550 adding 'funvip/external/trimal.v1.4/trimAl/bin/libgcc_s_dw2-1.dll' 2024-05-17T10:33:48,748 adding 'funvip/external/trimal.v1.4/trimAl/bin/libstdc++-6.dll' 2024-05-17T10:33:49,125 adding 'funvip/external/trimal.v1.4/trimAl/bin/trimal.exe' 2024-05-17T10:33:49,129 adding 'funvip/external/trimal.v1.4/trimAl/scripts/check_codon_alignments.py' 2024-05-17T10:33:49,130 adding 'funvip/external/trimal.v1.4/trimAl/scripts/compare_trimmed_msas.sh' 2024-05-17T10:33:49,132 adding 'funvip/external/trimal.v1.4/trimAl/scripts/generateRandomAlignmentsUsingAsSeedRealAlignments.py' 2024-05-17T10:33:49,136 adding 'funvip/external/trimal.v1.4/trimAl/scripts/generate_trimmed_msas.sh' 2024-05-17T10:33:49,138 adding 'funvip/external/trimal.v1.4/trimAl/scripts/get_sequence_representative_from_alignment.py' 2024-05-17T10:33:49,139 adding 'funvip/external/trimal.v1.4/trimAl/scripts/get_sequences_gaps_ratio.py' 2024-05-17T10:33:49,141 adding 'funvip/external/trimal.v1.4/trimAl/scripts/remove_shorter_sequences.py' 2024-05-17T10:33:49,143 adding 'funvip/external/trimal.v1.4/trimAl/scripts/selective_trimming_for_dNdS_analyses.based_neighbours.py' 2024-05-17T10:33:49,144 adding 'funvip/external/trimal.v1.4/trimAl/scripts/set_manual_boundaries.py' 2024-05-17T10:33:49,157 adding 'funvip/external/trimal.v1.4/trimAl/source/alignment.cpp' 2024-05-17T10:33:49,160 adding 'funvip/external/trimal.v1.4/trimAl/source/alignment.h' 2024-05-17T10:33:49,184 adding 'funvip/external/trimal.v1.4/trimAl/source/alignment.o' 2024-05-17T10:33:49,187 adding 'funvip/external/trimal.v1.4/trimAl/source/autAlignment.cpp' 2024-05-17T10:33:49,190 adding 'funvip/external/trimal.v1.4/trimAl/source/autAlignment.o' 2024-05-17T10:33:49,192 adding 'funvip/external/trimal.v1.4/trimAl/source/compareFiles.cpp' 2024-05-17T10:33:49,194 adding 'funvip/external/trimal.v1.4/trimAl/source/compareFiles.h' 2024-05-17T10:33:49,197 adding 'funvip/external/trimal.v1.4/trimAl/source/compareFiles.o' 2024-05-17T10:33:49,198 adding 'funvip/external/trimal.v1.4/trimAl/source/defines.h' 2024-05-17T10:33:49,204 adding 'funvip/external/trimal.v1.4/trimAl/source/main.cpp' 2024-05-17T10:33:49,206 adding 'funvip/external/trimal.v1.4/trimAl/source/makefile' 2024-05-17T10:33:49,207 adding 'funvip/external/trimal.v1.4/trimAl/source/makefile.MacOS' 2024-05-17T10:33:49,209 adding 'funvip/external/trimal.v1.4/trimAl/source/readAl.cpp' 2024-05-17T10:33:49,256 adding 'funvip/external/trimal.v1.4/trimAl/source/readal.exe' 2024-05-17T10:33:49,264 adding 'funvip/external/trimal.v1.4/trimAl/source/rwAlignment.cpp' 2024-05-17T10:33:49,278 adding 'funvip/external/trimal.v1.4/trimAl/source/rwAlignment.o' 2024-05-17T10:33:49,280 adding 'funvip/external/trimal.v1.4/trimAl/source/sequencesMatrix.cpp' 2024-05-17T10:33:49,282 adding 'funvip/external/trimal.v1.4/trimAl/source/sequencesMatrix.h' 2024-05-17T10:33:49,284 adding 'funvip/external/trimal.v1.4/trimAl/source/sequencesMatrix.o' 2024-05-17T10:33:49,286 adding 'funvip/external/trimal.v1.4/trimAl/source/similarityMatrix.cpp' 2024-05-17T10:33:49,287 adding 'funvip/external/trimal.v1.4/trimAl/source/similarityMatrix.h' 2024-05-17T10:33:49,290 adding 'funvip/external/trimal.v1.4/trimAl/source/similarityMatrix.o' 2024-05-17T10:33:49,293 adding 'funvip/external/trimal.v1.4/trimAl/source/statAl.cpp' 2024-05-17T10:33:49,341 adding 'funvip/external/trimal.v1.4/trimAl/source/statal.exe' 2024-05-17T10:33:49,345 adding 'funvip/external/trimal.v1.4/trimAl/source/statisticsConservation.cpp' 2024-05-17T10:33:49,347 adding 'funvip/external/trimal.v1.4/trimAl/source/statisticsConservation.h' 2024-05-17T10:33:49,349 adding 'funvip/external/trimal.v1.4/trimAl/source/statisticsConservation.o' 2024-05-17T10:33:49,351 adding 'funvip/external/trimal.v1.4/trimAl/source/statisticsFiles.cpp' 2024-05-17T10:33:49,352 adding 'funvip/external/trimal.v1.4/trimAl/source/statisticsFiles.h' 2024-05-17T10:33:49,354 adding 'funvip/external/trimal.v1.4/trimAl/source/statisticsGaps.cpp' 2024-05-17T10:33:49,356 adding 'funvip/external/trimal.v1.4/trimAl/source/statisticsGaps.h' 2024-05-17T10:33:49,358 adding 'funvip/external/trimal.v1.4/trimAl/source/statisticsGaps.o' 2024-05-17T10:33:49,360 adding 'funvip/external/trimal.v1.4/trimAl/source/utils.cpp' 2024-05-17T10:33:49,362 adding 'funvip/external/trimal.v1.4/trimAl/source/utils.h' 2024-05-17T10:33:49,365 adding 'funvip/external/trimal.v1.4/trimAl/source/utils.o' 2024-05-17T10:33:49,367 adding 'funvip/external/trimal.v1.4/trimAl/source/values.h' 2024-05-17T10:33:49,369 adding 'funvip/preset/accurate.yaml' 2024-05-17T10:33:49,370 adding 'funvip/preset/fast.yaml' 2024-05-17T10:33:49,372 adding 'funvip/src/__init__.py' 2024-05-17T10:33:49,373 adding 'funvip/src/align.py' 2024-05-17T10:33:49,376 adding 'funvip/src/cluster.py' 2024-05-17T10:33:49,378 adding 'funvip/src/command.py' 2024-05-17T10:33:49,379 adding 'funvip/src/concatenate.py' 2024-05-17T10:33:49,383 adding 'funvip/src/dataset.py' 2024-05-17T10:33:49,385 adding 'funvip/src/ext.py' 2024-05-17T10:33:49,386 adding 'funvip/src/hasher.py' 2024-05-17T10:33:49,388 adding 'funvip/src/initialize.py' 2024-05-17T10:33:49,389 adding 'funvip/src/logger.py' 2024-05-17T10:33:49,391 adding 'funvip/src/logics.py' 2024-05-17T10:33:49,393 adding 'funvip/src/modeltest.py' 2024-05-17T10:33:49,394 adding 'funvip/src/ncbi.py' 2024-05-17T10:33:49,395 adding 'funvip/src/opt_generator.py' 2024-05-17T10:33:49,397 adding 'funvip/src/patch.py' 2024-05-17T10:33:49,401 adding 'funvip/src/reporter.py' 2024-05-17T10:33:49,403 adding 'funvip/src/save.py' 2024-05-17T10:33:49,405 adding 'funvip/src/search.py' 2024-05-17T10:33:49,407 adding 'funvip/src/tool.py' 2024-05-17T10:33:49,408 adding 'funvip/src/tree.py' 2024-05-17T10:33:49,414 adding 'funvip/src/tree_interpretation.py' 2024-05-17T10:33:49,417 adding 'funvip/src/tree_interpretation_pipe.py' 2024-05-17T10:33:49,419 adding 'funvip/src/trim.py' 2024-05-17T10:33:49,422 adding 'funvip/src/validate_input.py' 2024-05-17T10:33:49,428 adding 'funvip/src/validate_option.py' 2024-05-17T10:33:49,429 adding 'funvip/src/validation.py' 2024-05-17T10:33:49,431 adding 'funvip/src/version.py' 2024-05-17T10:33:49,433 adding 'funvip/test_dataset/penicillium/Options.config' 2024-05-17T10:33:49,434 adding 'funvip/test_dataset/penicillium/preset.yaml' 2024-05-17T10:33:49,472 adding 'funvip/test_dataset/penicillium/DB/DB_Penicillium.xlsx' 2024-05-17T10:33:49,479 adding 'funvip/test_dataset/penicillium/Query/Query.xlsx' 2024-05-17T10:33:49,481 adding 'funvip/test_dataset/terrei/preset.yaml' 2024-05-17T10:33:49,484 adding 'funvip/test_dataset/terrei/DB/FunVIP_Aspergillus_db.xlsx' 2024-05-17T10:33:49,487 adding 'funvip/test_dataset/terrei/Query/FunVIP_Aspergillus_query.xlsx' 2024-05-17T10:33:49,493 adding 'FunVIP-0.3.21.dist-info/LICENSE' 2024-05-17T10:33:49,494 adding 'FunVIP-0.3.21.dist-info/METADATA' 2024-05-17T10:33:49,495 adding 'FunVIP-0.3.21.dist-info/WHEEL' 2024-05-17T10:33:49,496 adding 'FunVIP-0.3.21.dist-info/entry_points.txt' 2024-05-17T10:33:49,497 adding 'FunVIP-0.3.21.dist-info/top_level.txt' 2024-05-17T10:33:49,500 adding 'FunVIP-0.3.21.dist-info/RECORD' 2024-05-17T10:33:49,514 removing build/bdist.linux-armv7l/wheel 2024-05-17T10:34:11,589 Building wheel for funvip (pyproject.toml): finished with status 'done' 2024-05-17T10:34:12,826 Created wheel for funvip: filename=FunVIP-0.3.21-py3-none-any.whl size=59660173 sha256=e1863d6683eb41c991cce86262ef477d12ad652320dfb6fa0f5b9d184d7c42c6 2024-05-17T10:34:12,827 Stored in directory: /tmp/pip-ephem-wheel-cache-mryjtxft/wheels/4c/c2/4e/43d752c11bf19b6ccf6aa2516751ae4911766cd4d5998e000b 2024-05-17T10:34:12,862 Successfully built funvip 2024-05-17T10:34:14,205 Removed build tracker: '/tmp/pip-build-tracker-9ygrhm0a'