2024-05-17T11:39:18,671 Created temporary directory: /tmp/pip-build-tracker-shvp0_w6 2024-05-17T11:39:18,672 Initialized build tracking at /tmp/pip-build-tracker-shvp0_w6 2024-05-17T11:39:18,673 Created build tracker: /tmp/pip-build-tracker-shvp0_w6 2024-05-17T11:39:18,673 Entered build tracker: /tmp/pip-build-tracker-shvp0_w6 2024-05-17T11:39:18,674 Created temporary directory: /tmp/pip-wheel-cjw6eq1s 2024-05-17T11:39:18,678 Created temporary directory: /tmp/pip-ephem-wheel-cache-z6otba4g 2024-05-17T11:39:18,701 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2024-05-17T11:39:18,704 2 location(s) to search for versions of multiqc: 2024-05-17T11:39:18,704 * https://pypi.org/simple/multiqc/ 2024-05-17T11:39:18,704 * https://www.piwheels.org/simple/multiqc/ 2024-05-17T11:39:18,705 Fetching project page and analyzing links: https://pypi.org/simple/multiqc/ 2024-05-17T11:39:18,706 Getting page https://pypi.org/simple/multiqc/ 2024-05-17T11:39:18,707 Found index url https://pypi.org/simple/ 2024-05-17T11:39:18,919 Fetched page https://pypi.org/simple/multiqc/ as application/vnd.pypi.simple.v1+json 2024-05-17T11:39:18,929 Found link https://files.pythonhosted.org/packages/44/ae/59e74780d4c66afbbac9053d2b6b0f12aaef94e4ce92cb00b71a20025098/multiqc-0.1.tar.gz (from https://pypi.org/simple/multiqc/), version: 0.1 2024-05-17T11:39:18,930 Found link https://files.pythonhosted.org/packages/e9/7c/14ca085189df0aaba25054bf42fe3ceb74bcbee5c271d4c6f9c9c39bf1c0/multiqc-0.2.0.tar.gz (from https://pypi.org/simple/multiqc/), version: 0.2.0 2024-05-17T11:39:18,931 Found link https://files.pythonhosted.org/packages/5d/cd/08627e78e84acc038dcab2ee6403af9eca73b1203fe505645a2c33c316b0/multiqc-0.3.0.tar.gz (from https://pypi.org/simple/multiqc/), version: 0.3.0 2024-05-17T11:39:18,931 Found link https://files.pythonhosted.org/packages/47/bb/3339d0a27891c241de1bcc76122e779b67efad072140224a02e8700e5199/multiqc-0.3.1.tar.gz (from https://pypi.org/simple/multiqc/), version: 0.3.1 2024-05-17T11:39:18,932 Found link https://files.pythonhosted.org/packages/e5/56/76229fca10700a78fe4a51baf2de7385509a48c7d281f42d9d311a547d76/multiqc-0.3.2.tar.gz (from https://pypi.org/simple/multiqc/), version: 0.3.2 2024-05-17T11:39:18,933 Found link https://files.pythonhosted.org/packages/1c/e0/1e14407025dd461f1917354af543dcd912b669729ce77e0e0d29879d146e/multiqc-0.4.tar.gz (from https://pypi.org/simple/multiqc/), version: 0.4 2024-05-17T11:39:18,934 Found link https://files.pythonhosted.org/packages/08/1c/d9833670aee1303332713f456140730a7a8335cc97bc7aa3c67f37a3b0e1/multiqc-0.5.tar.gz (from https://pypi.org/simple/multiqc/), version: 0.5 2024-05-17T11:39:18,934 Found link https://files.pythonhosted.org/packages/23/d9/95a5e62eea95f220007d7a6683d0da1ee1d9f99e6932bcff793b6601ef15/multiqc-0.6.tar.gz (from https://pypi.org/simple/multiqc/), version: 0.6 2024-05-17T11:39:18,935 Found link https://files.pythonhosted.org/packages/6b/b7/839b0c84448856bd3b2e8c381c4778c4b9c22ded890881d1cd12f9e686fa/multiqc-0.7.tar.gz (from https://pypi.org/simple/multiqc/), version: 0.7 2024-05-17T11:39:18,936 Found link https://files.pythonhosted.org/packages/ab/e4/9a9eea1facbc3dcb7c90e38d3719eea43d4877aa54a887726982f1ba1671/multiqc-0.8.tar.gz (from https://pypi.org/simple/multiqc/), version: 0.8 2024-05-17T11:39:18,937 Found link https://files.pythonhosted.org/packages/ca/7b/b65089cad82caa2618298482c6c80967bb22aca5f64a50df91f0a2888172/multiqc-0.9.tar.gz (from https://pypi.org/simple/multiqc/), version: 0.9 2024-05-17T11:39:18,937 Found link https://files.pythonhosted.org/packages/61/79/92c1b7d04f87bf70405cbcd24ae059abd509b19b13b469934125311dbf9f/multiqc-1.0.tar.gz (from https://pypi.org/simple/multiqc/), version: 1.0 2024-05-17T11:39:18,938 Found link https://files.pythonhosted.org/packages/a0/7c/bb475d750a39917218d48fd592be147bbe47f76f6afaeda84e350bd973fb/multiqc-1.1.tar.gz (from https://pypi.org/simple/multiqc/), version: 1.1 2024-05-17T11:39:18,939 Found link https://files.pythonhosted.org/packages/7e/c5/5b7e713b892ceadfdb23afe74acd9f246298f880fa96a304276a235422b4/multiqc-1.2.tar.gz (from https://pypi.org/simple/multiqc/), version: 1.2 2024-05-17T11:39:18,940 Found link https://files.pythonhosted.org/packages/2c/af/1183857d4f2ade150fb2e22282ff11e6f5355419d129ca4ee7200022177f/multiqc-1.3.tar.gz (from https://pypi.org/simple/multiqc/), version: 1.3 2024-05-17T11:39:18,941 Found link https://files.pythonhosted.org/packages/af/a1/5c5702c4b0ce9ee6fb7d1c982cc6f20832a85bfce184dcb8178f0bdcb5df/multiqc-1.4.tar.gz (from https://pypi.org/simple/multiqc/), version: 1.4 2024-05-17T11:39:18,942 Found link https://files.pythonhosted.org/packages/fa/3e/fbdcbaebadad2110eed3b4212ced58617cbd9badbfc728c5eabc53916b84/multiqc-1.5.tar.gz (from https://pypi.org/simple/multiqc/), version: 1.5 2024-05-17T11:39:18,942 Found link https://files.pythonhosted.org/packages/0c/00/1fd8c0cc80531bf51a1a2b15928a408b0e8a442a6e59236edc2a76371284/multiqc-1.6.tar.gz (from https://pypi.org/simple/multiqc/), version: 1.6 2024-05-17T11:39:18,943 Found link https://files.pythonhosted.org/packages/6b/c7/817d8ef024866e00625d94bbfa26e7a4131eedc166b3d65d7f54ebc90ed6/multiqc-1.7.tar.gz (from https://pypi.org/simple/multiqc/), version: 1.7 2024-05-17T11:39:18,943 Found link https://files.pythonhosted.org/packages/d3/4b/1cf18ef697e5daa72dfa55d496167354e6ec7d78e87c696a52f338c2dc63/multiqc-1.8.tar.gz (from https://pypi.org/simple/multiqc/), version: 1.8 2024-05-17T11:39:18,944 Found link https://files.pythonhosted.org/packages/c8/2d/f0a6be15f861c5d165726d7afecd823ca158dff530b566379623a0e4534b/multiqc-1.9.tar.gz (from https://pypi.org/simple/multiqc/), version: 1.9 2024-05-17T11:39:18,944 Skipping link: No binaries permitted for multiqc: https://files.pythonhosted.org/packages/35/e5/dfccaa54058f2f5d2a83176bfee12ca65d631dba5dadda2a0c52ce25c45f/multiqc-1.10-py3-none-any.whl (from https://pypi.org/simple/multiqc/) 2024-05-17T11:39:18,945 Found link https://files.pythonhosted.org/packages/4e/39/cd87ee0581ead995b561635106d47cc9593687a76db9745a093d09fff1d9/multiqc-1.10.tar.gz (from https://pypi.org/simple/multiqc/), version: 1.10 2024-05-17T11:39:18,945 Skipping link: No binaries permitted for multiqc: https://files.pythonhosted.org/packages/87/80/2e648984b8080fd65cb7c8eaa948a90ce74e8391828e6f7bdd4d0d137242/multiqc-1.10.1-py3-none-any.whl (from https://pypi.org/simple/multiqc/) 2024-05-17T11:39:18,946 Found link https://files.pythonhosted.org/packages/ca/e7/549a185924157e427b951ac741c1312ee4b324be9585ad323617bb3077a4/multiqc-1.10.1.tar.gz (from https://pypi.org/simple/multiqc/), version: 1.10.1 2024-05-17T11:39:18,947 Skipping link: No binaries permitted for multiqc: https://files.pythonhosted.org/packages/2e/2a/4332775300481391ea5a7a1f35406f83f5812a2734eff5987c462c7e1ec7/multiqc-1.11-py3-none-any.whl (from https://pypi.org/simple/multiqc/) 2024-05-17T11:39:18,947 Found link https://files.pythonhosted.org/packages/22/23/3f94ffb423762201bcccf0e0cbf821fccf75673a9fedfb3e7c7ea491024d/multiqc-1.11.tar.gz (from https://pypi.org/simple/multiqc/), version: 1.11 2024-05-17T11:39:18,948 Skipping link: No binaries permitted for multiqc: https://files.pythonhosted.org/packages/08/74/23d79b7df154d5742e5b25b9cdf3cc352445290d90c7cc5fb770ba9911a4/multiqc-1.12-py3-none-any.whl (from https://pypi.org/simple/multiqc/) 2024-05-17T11:39:18,949 Found link https://files.pythonhosted.org/packages/6a/f0/122025f4521fd085c07d7a706f08819b4c6bed9e62cfe99453f8c5968ab9/multiqc-1.12.tar.gz (from https://pypi.org/simple/multiqc/), version: 1.12 2024-05-17T11:39:18,949 Skipping link: No binaries permitted for multiqc: https://files.pythonhosted.org/packages/1a/37/35f769e2be82ba3760a62a1cb39af42beee5334efa40cc7e151626e03c91/multiqc-1.13-py3-none-any.whl (from https://pypi.org/simple/multiqc/) 2024-05-17T11:39:18,950 Found link https://files.pythonhosted.org/packages/7b/cd/cbd2df3bf899f79ec4b20d5807262dfd3b6ce02245e852ece8dcdad250b1/multiqc-1.13.tar.gz (from https://pypi.org/simple/multiqc/), version: 1.13 2024-05-17T11:39:18,951 Skipping link: No binaries permitted for multiqc: https://files.pythonhosted.org/packages/11/4c/0f85a278cd37406f195115e38281478e9933c50f389b7c4d989af42cb9d1/multiqc-1.14-py3-none-any.whl (from https://pypi.org/simple/multiqc/) 2024-05-17T11:39:18,951 Found link https://files.pythonhosted.org/packages/ae/bb/3cb9d23ba28eb96a479161230626e3a11a04fc99899ac341ec949bc38bcb/multiqc-1.14.tar.gz (from https://pypi.org/simple/multiqc/), version: 1.14 2024-05-17T11:39:18,952 Skipping link: No binaries permitted for multiqc: https://files.pythonhosted.org/packages/65/cd/ef0884f0abb38c9662b11f212f463cdb022ef504c512719ccf13d4c728eb/multiqc-1.15-py3-none-any.whl (from https://pypi.org/simple/multiqc/) 2024-05-17T11:39:18,953 Found link https://files.pythonhosted.org/packages/ff/96/4ea623b57fef48f6b6c0a89757d53f7b4482b1ab950501617177d5c4a979/multiqc-1.15.tar.gz (from https://pypi.org/simple/multiqc/), version: 1.15 2024-05-17T11:39:18,953 Skipping link: No binaries permitted for multiqc: https://files.pythonhosted.org/packages/e0/6b/f6b8380c75a069c079c7b60b17d1cc0ec1c67a3c9623cfe4ee41a73fa9b4/multiqc-1.16-py3-none-any.whl (from https://pypi.org/simple/multiqc/) 2024-05-17T11:39:18,954 Found link https://files.pythonhosted.org/packages/36/3d/cc530c0cdd5c9dfd4e197c8147efa69c7da18023e8ef23d6daba4ac4e13c/multiqc-1.16.tar.gz (from https://pypi.org/simple/multiqc/), version: 1.16 2024-05-17T11:39:18,954 Skipping link: No binaries permitted for multiqc: https://files.pythonhosted.org/packages/a1/a5/2ee5d2546f04ef6addd930de9b772a6ee32151d4632319cde64aef822d50/multiqc-1.17-py3-none-any.whl (from https://pypi.org/simple/multiqc/) 2024-05-17T11:39:18,955 Found link https://files.pythonhosted.org/packages/e9/0d/2fc684e101ec6ce82ea5c1eaad1a0ab202fd08f50bee5847ef9e8168b7ad/multiqc-1.17.tar.gz (from https://pypi.org/simple/multiqc/), version: 1.17 2024-05-17T11:39:18,955 Skipping link: No binaries permitted for multiqc: https://files.pythonhosted.org/packages/ec/28/0e526e176fde109e06f0409e940e10893bc2e6e7d5cf91a44a3cf8ea214e/multiqc-1.18-py3-none-any.whl (from https://pypi.org/simple/multiqc/) 2024-05-17T11:39:18,956 Found link https://files.pythonhosted.org/packages/a5/17/6ed4268d6bc06489add671e5acbb7d429c97b99391b20d964689044cda77/multiqc-1.18.tar.gz (from https://pypi.org/simple/multiqc/), version: 1.18 2024-05-17T11:39:18,957 Skipping link: No binaries permitted for multiqc: https://files.pythonhosted.org/packages/d6/89/c164b49532afaf3308f809de48c519108592d0b204e368dca2a93b1b956b/multiqc-1.19-py3-none-any.whl (from https://pypi.org/simple/multiqc/) 2024-05-17T11:39:18,958 Found link https://files.pythonhosted.org/packages/1d/7c/0b3882a0916151b7877faef0f80ca403e1a7f4fc82b875b2dca32cdb8b89/multiqc-1.19.tar.gz (from https://pypi.org/simple/multiqc/), version: 1.19 2024-05-17T11:39:18,959 Skipping link: No binaries permitted for multiqc: https://files.pythonhosted.org/packages/6e/38/ec1edb7d5337c1bf4763e7ef0bb167ce14802742dff618a2fad3f251fb84/multiqc-1.20-py3-none-any.whl (from https://pypi.org/simple/multiqc/) 2024-05-17T11:39:18,959 Found link https://files.pythonhosted.org/packages/8c/c2/6016a7cb33e904a2637da26065a45198f8ed88bc9461d30a177c130360f8/multiqc-1.20.tar.gz (from https://pypi.org/simple/multiqc/), version: 1.20 2024-05-17T11:39:18,960 Skipping link: No binaries permitted for multiqc: https://files.pythonhosted.org/packages/05/93/f3d9efa1c949050e73a504e350a2f399bcc6c7db30e132e7469ce30cc36c/multiqc-1.21-py3-none-any.whl (from https://pypi.org/simple/multiqc/) (requires-python:>=3.8) 2024-05-17T11:39:18,961 Found link https://files.pythonhosted.org/packages/d7/4a/69fa3d76fb71a50c3f0f22a5b4d3fd6db3956f631862804f6524b66122d6/multiqc-1.21.tar.gz (from https://pypi.org/simple/multiqc/) (requires-python:>=3.8), version: 1.21 2024-05-17T11:39:18,962 Skipping link: No binaries permitted for multiqc: https://files.pythonhosted.org/packages/81/bc/5780dd13065676e4b1befca4345e18734a71ebc4f11db0cc1b4b3f325c36/multiqc-1.22-py3-none-any.whl (from https://pypi.org/simple/multiqc/) (requires-python:>=3.8) 2024-05-17T11:39:18,963 Found link https://files.pythonhosted.org/packages/b4/60/ed18675ca283a2c7469308399789240f31f2f6f340ed192f264993361a83/multiqc-1.22.tar.gz (from https://pypi.org/simple/multiqc/) (requires-python:>=3.8), version: 1.22 2024-05-17T11:39:18,964 Skipping link: No binaries permitted for multiqc: https://files.pythonhosted.org/packages/f6/12/f2dc24575e39d559e759aa02b4fb63d5e1e1a025420d08c497346b229e9c/multiqc-1.22.1-py3-none-any.whl (from https://pypi.org/simple/multiqc/) (requires-python:>=3.8) 2024-05-17T11:39:18,965 Found link https://files.pythonhosted.org/packages/6e/fa/2f25f892aaa7ef113f18c546ecdf3439fddd1ab1bfbc2bcd113b9ed2e3b6/multiqc-1.22.1.tar.gz (from https://pypi.org/simple/multiqc/) (requires-python:>=3.8), version: 1.22.1 2024-05-17T11:39:18,966 Fetching project page and analyzing links: https://www.piwheels.org/simple/multiqc/ 2024-05-17T11:39:18,966 Getting page https://www.piwheels.org/simple/multiqc/ 2024-05-17T11:39:18,968 Found index url https://www.piwheels.org/simple/ 2024-05-17T11:39:19,139 Fetched page https://www.piwheels.org/simple/multiqc/ as text/html 2024-05-17T11:39:19,148 Skipping link: No binaries permitted for multiqc: https://www.piwheels.org/simple/multiqc/multiqc-1.22-py3-none-any.whl#sha256=18f07e1a35ccfb9ef4ef2b78fe2cee9ea86c93543d51c7518aa87bdf06a7c0ff (from https://www.piwheels.org/simple/multiqc/) (requires-python:>=3.8) 2024-05-17T11:39:19,149 Skipping link: No binaries permitted for multiqc: https://www.piwheels.org/simple/multiqc/multiqc-1.21-py3-none-any.whl#sha256=66bad70b6b309118590096feb58c3855aa0a646c5828d5162776b3e954dcabb0 (from https://www.piwheels.org/simple/multiqc/) (requires-python:>=3.8) 2024-05-17T11:39:19,149 Skipping link: No binaries permitted for multiqc: https://www.piwheels.org/simple/multiqc/multiqc-1.20-py3-none-any.whl#sha256=761b9ace340a048c13c61645e020f0afe3284e1d4bace8fca65fc45c560ccd12 (from https://www.piwheels.org/simple/multiqc/) 2024-05-17T11:39:19,150 Skipping link: No binaries permitted for multiqc: https://www.piwheels.org/simple/multiqc/multiqc-1.19-py3-none-any.whl#sha256=95392f476f57d4e6409a8840c07548b80fa1ad6a914ec4fd1f0d5ba4674c1f4b (from https://www.piwheels.org/simple/multiqc/) 2024-05-17T11:39:19,150 Skipping link: No binaries permitted for multiqc: https://www.piwheels.org/simple/multiqc/multiqc-1.18-py3-none-any.whl#sha256=6571d2a944e15103a4d824a1bada8a8d1d11a5369665b0bcebd80bdb402dac7a (from https://www.piwheels.org/simple/multiqc/) 2024-05-17T11:39:19,151 Skipping link: No binaries permitted for multiqc: https://www.piwheels.org/simple/multiqc/multiqc-1.17-py3-none-any.whl#sha256=3dc28a2d049c186d903291a1db4451f0a5a8fef09e66e057baf0acd6179e6263 (from https://www.piwheels.org/simple/multiqc/) 2024-05-17T11:39:19,152 Skipping link: No binaries permitted for multiqc: https://www.piwheels.org/simple/multiqc/multiqc-1.16-py3-none-any.whl#sha256=03cca6a0517a1d55a342d26623de81f9cac003da50a6fe2e9e8450ce798ec2fa (from https://www.piwheels.org/simple/multiqc/) 2024-05-17T11:39:19,152 Skipping link: No binaries permitted for multiqc: https://www.piwheels.org/simple/multiqc/multiqc-1.15-py3-none-any.whl#sha256=b8e2124a3861980ad09b76cddb6765026adbbccf6744750bede1e09f8a938cb5 (from https://www.piwheels.org/simple/multiqc/) 2024-05-17T11:39:19,153 Skipping link: No binaries permitted for multiqc: https://www.piwheels.org/simple/multiqc/multiqc-1.14-py3-none-any.whl#sha256=77b5c82fcefdd31644526d308c1eb7b7089ad0603a489df6c628cfe8643aa301 (from https://www.piwheels.org/simple/multiqc/) 2024-05-17T11:39:19,154 Skipping link: No binaries permitted for multiqc: https://www.piwheels.org/simple/multiqc/multiqc-1.13-py3-none-any.whl#sha256=6d6952eddd313ed10111a2a56abf5421e4418808c270c772f6f35ec7523f0976 (from https://www.piwheels.org/simple/multiqc/) 2024-05-17T11:39:19,154 Skipping link: No binaries permitted for multiqc: https://www.piwheels.org/simple/multiqc/multiqc-1.12-py3-none-any.whl#sha256=67987570ac064a0c09bb6a22e69589384484762af8cac9e4a688f51522a4e8a3 (from https://www.piwheels.org/simple/multiqc/) 2024-05-17T11:39:19,155 Skipping link: No binaries permitted for multiqc: https://www.piwheels.org/simple/multiqc/multiqc-1.11-py3-none-any.whl#sha256=b2ea91646a12c0e31df6f5d29509d6ab0e371916b55d7f35b3e3a03bdcc0ef3d (from https://www.piwheels.org/simple/multiqc/) 2024-05-17T11:39:19,155 Skipping link: No binaries permitted for multiqc: https://www.piwheels.org/simple/multiqc/multiqc-1.10.1-py3-none-any.whl#sha256=213b2a50f377d47c3203aadbe59374e5f392ed700c3c8b99b25a321c6504433b (from https://www.piwheels.org/simple/multiqc/) 2024-05-17T11:39:19,156 Skipping link: No binaries permitted for multiqc: https://www.piwheels.org/simple/multiqc/multiqc-1.10-py3-none-any.whl#sha256=d50081f549cebbfd77e5ee016efc19d9860e63e14faac945bebb55707bdcde8d (from https://www.piwheels.org/simple/multiqc/) 2024-05-17T11:39:19,157 Skipping link: No binaries permitted for multiqc: https://www.piwheels.org/simple/multiqc/multiqc-1.9-py3-none-any.whl#sha256=28cad8bafce03a40b71bffb8c9d6b0a91b46db72750069b4b2a4760650a1e7ab (from https://www.piwheels.org/simple/multiqc/) 2024-05-17T11:39:19,157 Skipping link: No binaries permitted for multiqc: https://www.piwheels.org/simple/multiqc/multiqc-1.8-py3-none-any.whl#sha256=5c1de3fffcfc9ff6ae686c8b47b1bcc3eeab0bcb6ec104fdafbc920c4861fbb7 (from https://www.piwheels.org/simple/multiqc/) 2024-05-17T11:39:19,158 Skipping link: No binaries permitted for multiqc: https://www.piwheels.org/simple/multiqc/multiqc-1.7-py3-none-any.whl#sha256=78412742db690568f7481fd2e021dc148be2862519e3f193d20cbf957e6f0338 (from https://www.piwheels.org/simple/multiqc/) 2024-05-17T11:39:19,158 Skipping link: No binaries permitted for multiqc: https://www.piwheels.org/simple/multiqc/multiqc-1.6-py3-none-any.whl#sha256=e1600e93d93041641028f3364fa493f6f35a7b765d5f0aafd73089ace6f062e6 (from https://www.piwheels.org/simple/multiqc/) 2024-05-17T11:39:19,159 Skipping link: No binaries permitted for multiqc: https://www.piwheels.org/simple/multiqc/multiqc-1.5-py3-none-any.whl#sha256=18ee8675a1f316d459b91049c42fde5061c6ae863063408fa063a4ecbeb0d527 (from https://www.piwheels.org/simple/multiqc/) 2024-05-17T11:39:19,159 Skipping link: No binaries permitted for multiqc: https://www.piwheels.org/simple/multiqc/multiqc-1.4-py3-none-any.whl#sha256=02e593c71a8c2ed237d3f0138051b8e8c7f7f7c018ecc51b0cf46a17ad8c3f7f (from https://www.piwheels.org/simple/multiqc/) 2024-05-17T11:39:19,160 Skipping link: No binaries permitted for multiqc: https://www.piwheels.org/simple/multiqc/multiqc-1.3-py3-none-any.whl#sha256=780ff22fadd86cb81d9afe67c858e478ada911ed296d7d3f430a1da03059f96f (from https://www.piwheels.org/simple/multiqc/) 2024-05-17T11:39:19,160 Skipping link: No binaries permitted for multiqc: https://www.piwheels.org/simple/multiqc/multiqc-1.2-py3-none-any.whl#sha256=a2d3ab5bfec00fcaeb2b6b02477683cb026b7e803238094f6ba5706e9911e5db (from https://www.piwheels.org/simple/multiqc/) 2024-05-17T11:39:19,161 Skipping link: No binaries permitted for multiqc: https://www.piwheels.org/simple/multiqc/multiqc-1.1-py3-none-any.whl#sha256=17b18b185ba21595f7b6ab85364b590b11f5b90666bedd3fef8779d986b8783b (from https://www.piwheels.org/simple/multiqc/) 2024-05-17T11:39:19,162 Skipping link: No binaries permitted for multiqc: https://www.piwheels.org/simple/multiqc/multiqc-1.0-py3-none-any.whl#sha256=24119737c52e447f7913e17ef08e0a0e7218dd10ac535aa8eddb5181906eca44 (from https://www.piwheels.org/simple/multiqc/) 2024-05-17T11:39:19,162 Skipping link: No binaries permitted for multiqc: https://www.piwheels.org/simple/multiqc/multiqc-0.9-py3-none-any.whl#sha256=8e08076a99a715a117ba6a56d8d23be94585467dff12235fde06aa32894f3588 (from https://www.piwheels.org/simple/multiqc/) 2024-05-17T11:39:19,163 Skipping link: No binaries permitted for multiqc: https://www.piwheels.org/simple/multiqc/multiqc-0.8-py3-none-any.whl#sha256=24d31f7b916c4c11cb816a515f858d222d26027a5938cef4f0c3f52ad37e3329 (from https://www.piwheels.org/simple/multiqc/) 2024-05-17T11:39:19,163 Skipping link: No binaries permitted for multiqc: https://www.piwheels.org/simple/multiqc/multiqc-0.7-py3-none-any.whl#sha256=27df9fe1e307b2b16f157f3a1548b69b44f18346fdd66794327008ade6ab90db (from https://www.piwheels.org/simple/multiqc/) 2024-05-17T11:39:19,164 Skipping link: No binaries permitted for multiqc: https://www.piwheels.org/simple/multiqc/multiqc-0.6-py3-none-any.whl#sha256=14044c5aa5f26ae68a9f1c47423f113e7a0d3e95d5b16dd4dcad1df4f7621982 (from https://www.piwheels.org/simple/multiqc/) 2024-05-17T11:39:19,164 Skipping link: No binaries permitted for multiqc: https://www.piwheels.org/simple/multiqc/multiqc-0.5-py3-none-any.whl#sha256=5528eef1c13487a576717815ce7548964978e93f4668d414eb835d0267cd84ff (from https://www.piwheels.org/simple/multiqc/) 2024-05-17T11:39:19,165 Skipping link: No binaries permitted for multiqc: https://www.piwheels.org/simple/multiqc/multiqc-0.4-py3-none-any.whl#sha256=f67c3af42d83144411f956e962f736ef90b3e1946dd279ae47720a5142dd9a23 (from https://www.piwheels.org/simple/multiqc/) 2024-05-17T11:39:19,165 Skipping link: No binaries permitted for multiqc: https://www.piwheels.org/simple/multiqc/multiqc-0.3.2-py3-none-any.whl#sha256=ca3e9c65ab5f1290d0e5ce999ac078ec0b75633ac8b64bc38f79d41a442f0147 (from https://www.piwheels.org/simple/multiqc/) 2024-05-17T11:39:19,166 Skipping link: No binaries permitted for multiqc: https://www.piwheels.org/simple/multiqc/multiqc-0.3.1-py3-none-any.whl#sha256=e3fcc96c755277a57d0e7b1b8fac3256ff45b164d7a77655e169f54983470565 (from https://www.piwheels.org/simple/multiqc/) 2024-05-17T11:39:19,166 Skipping link: No binaries permitted for multiqc: https://www.piwheels.org/simple/multiqc/multiqc-0.3.0-py3-none-any.whl#sha256=d1c8d281f8a75ded36ccdafbc131072a3ee9a5ddd896d32dd22f9945141a6b12 (from https://www.piwheels.org/simple/multiqc/) 2024-05-17T11:39:19,167 Skipping link: No binaries permitted for multiqc: https://www.piwheels.org/simple/multiqc/multiqc-0.2.0-py3-none-any.whl#sha256=1ec95a9f8508ed8aee9eb0c6f7f3f77f6d477bf1405395854a1e2a1d2b5ea053 (from https://www.piwheels.org/simple/multiqc/) 2024-05-17T11:39:19,167 Skipping link: No binaries permitted for multiqc: https://www.piwheels.org/simple/multiqc/multiqc-0.1-py3-none-any.whl#sha256=aadbe1a0321716289d4557925ecb20ef7bb769a99c42ac213284f8c0af4eb0ea (from https://www.piwheels.org/simple/multiqc/) 2024-05-17T11:39:19,168 Skipping link: not a file: https://www.piwheels.org/simple/multiqc/ 2024-05-17T11:39:19,168 Skipping link: not a file: https://pypi.org/simple/multiqc/ 2024-05-17T11:39:19,191 Given no hashes to check 1 links for project 'multiqc': discarding no candidates 2024-05-17T11:39:19,209 Collecting multiqc==1.22.1 2024-05-17T11:39:19,212 Created temporary directory: /tmp/pip-unpack-hksi138m 2024-05-17T11:39:19,426 Downloading multiqc-1.22.1.tar.gz (4.2 MB) 2024-05-17T11:39:21,967 Added multiqc==1.22.1 from https://files.pythonhosted.org/packages/6e/fa/2f25f892aaa7ef113f18c546ecdf3439fddd1ab1bfbc2bcd113b9ed2e3b6/multiqc-1.22.1.tar.gz to build tracker '/tmp/pip-build-tracker-shvp0_w6' 2024-05-17T11:39:21,977 Created temporary directory: /tmp/pip-build-env-u8mgr1go 2024-05-17T11:39:21,982 Installing build dependencies: started 2024-05-17T11:39:21,983 Running command pip subprocess to install build dependencies 2024-05-17T11:39:23,135 Using pip 24.0 from /usr/local/lib/python3.11/dist-packages/pip (python 3.11) 2024-05-17T11:39:23,643 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2024-05-17T11:39:25,446 Collecting setuptools 2024-05-17T11:39:25,461 Using cached https://www.piwheels.org/simple/setuptools/setuptools-69.5.1-py3-none-any.whl (894 kB) 2024-05-17T11:39:28,152 Installing collected packages: setuptools 2024-05-17T11:39:31,236 Successfully installed setuptools-69.5.1 2024-05-17T11:39:32,200 Installing build dependencies: finished with status 'done' 2024-05-17T11:39:32,203 Getting requirements to build wheel: started 2024-05-17T11:39:32,205 Running command Getting requirements to build wheel 2024-05-17T11:39:32,983 running egg_info 2024-05-17T11:39:32,987 writing multiqc.egg-info/PKG-INFO 2024-05-17T11:39:32,994 writing dependency_links to multiqc.egg-info/dependency_links.txt 2024-05-17T11:39:33,001 writing entry points to multiqc.egg-info/entry_points.txt 2024-05-17T11:39:33,004 writing requirements to multiqc.egg-info/requires.txt 2024-05-17T11:39:33,005 writing top-level names to multiqc.egg-info/top_level.txt 2024-05-17T11:39:33,018 reading manifest file 'multiqc.egg-info/SOURCES.txt' 2024-05-17T11:39:33,100 reading manifest template 'MANIFEST.in' 2024-05-17T11:39:33,598 adding license file 'LICENSE' 2024-05-17T11:39:33,622 writing manifest file 'multiqc.egg-info/SOURCES.txt' 2024-05-17T11:39:33,738 Getting requirements to build wheel: finished with status 'done' 2024-05-17T11:39:33,746 Installing backend dependencies: started 2024-05-17T11:39:33,747 Running command pip subprocess to install backend dependencies 2024-05-17T11:39:34,891 Using pip 24.0 from /usr/local/lib/python3.11/dist-packages/pip (python 3.11) 2024-05-17T11:39:35,393 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2024-05-17T11:39:35,890 Collecting wheel 2024-05-17T11:39:35,905 Using cached https://www.piwheels.org/simple/wheel/wheel-0.43.0-py3-none-any.whl (65 kB) 2024-05-17T11:39:38,170 Installing collected packages: wheel 2024-05-17T11:39:38,411 Creating /tmp/pip-build-env-u8mgr1go/normal/local/bin 2024-05-17T11:39:38,414 changing mode of /tmp/pip-build-env-u8mgr1go/normal/local/bin/wheel to 755 2024-05-17T11:39:38,426 Successfully installed wheel-0.43.0 2024-05-17T11:39:38,869 Installing backend dependencies: finished with status 'done' 2024-05-17T11:39:38,871 Created temporary directory: /tmp/pip-modern-metadata-tc0rquqz 2024-05-17T11:39:38,873 Preparing metadata (pyproject.toml): started 2024-05-17T11:39:38,874 Running command Preparing metadata (pyproject.toml) 2024-05-17T11:39:39,970 running dist_info 2024-05-17T11:39:39,975 creating /tmp/pip-modern-metadata-tc0rquqz/multiqc.egg-info 2024-05-17T11:39:39,979 writing /tmp/pip-modern-metadata-tc0rquqz/multiqc.egg-info/PKG-INFO 2024-05-17T11:39:39,986 writing dependency_links to /tmp/pip-modern-metadata-tc0rquqz/multiqc.egg-info/dependency_links.txt 2024-05-17T11:39:39,992 writing entry points to /tmp/pip-modern-metadata-tc0rquqz/multiqc.egg-info/entry_points.txt 2024-05-17T11:39:39,995 writing requirements to /tmp/pip-modern-metadata-tc0rquqz/multiqc.egg-info/requires.txt 2024-05-17T11:39:39,996 writing top-level names to /tmp/pip-modern-metadata-tc0rquqz/multiqc.egg-info/top_level.txt 2024-05-17T11:39:39,998 writing manifest file '/tmp/pip-modern-metadata-tc0rquqz/multiqc.egg-info/SOURCES.txt' 2024-05-17T11:39:40,011 reading manifest file '/tmp/pip-modern-metadata-tc0rquqz/multiqc.egg-info/SOURCES.txt' 2024-05-17T11:39:40,013 reading manifest template 'MANIFEST.in' 2024-05-17T11:39:40,268 adding license file 'LICENSE' 2024-05-17T11:39:40,285 writing manifest file '/tmp/pip-modern-metadata-tc0rquqz/multiqc.egg-info/SOURCES.txt' 2024-05-17T11:39:40,287 creating '/tmp/pip-modern-metadata-tc0rquqz/multiqc-1.22.1.dist-info' 2024-05-17T11:39:40,454 Preparing metadata (pyproject.toml): finished with status 'done' 2024-05-17T11:39:40,465 Source in /tmp/pip-wheel-cjw6eq1s/multiqc_61410a57c32e4019a18f7aa3628558e7 has version 1.22.1, which satisfies requirement multiqc==1.22.1 from https://files.pythonhosted.org/packages/6e/fa/2f25f892aaa7ef113f18c546ecdf3439fddd1ab1bfbc2bcd113b9ed2e3b6/multiqc-1.22.1.tar.gz 2024-05-17T11:39:40,466 Removed multiqc==1.22.1 from https://files.pythonhosted.org/packages/6e/fa/2f25f892aaa7ef113f18c546ecdf3439fddd1ab1bfbc2bcd113b9ed2e3b6/multiqc-1.22.1.tar.gz from build tracker '/tmp/pip-build-tracker-shvp0_w6' 2024-05-17T11:39:40,485 Created temporary directory: /tmp/pip-unpack-yqyme9f5 2024-05-17T11:39:40,487 Created temporary directory: /tmp/pip-unpack-fhk2dhtd 2024-05-17T11:39:40,532 Building wheels for collected packages: multiqc 2024-05-17T11:39:40,536 Created temporary directory: /tmp/pip-wheel-jdfvmd_r 2024-05-17T11:39:40,537 Destination directory: /tmp/pip-wheel-jdfvmd_r 2024-05-17T11:39:40,539 Building wheel for multiqc (pyproject.toml): started 2024-05-17T11:39:40,540 Running command Building wheel for multiqc (pyproject.toml) 2024-05-17T11:39:41,310 running bdist_wheel 2024-05-17T11:39:41,326 running build 2024-05-17T11:39:41,326 running build_py 2024-05-17T11:39:41,330 creating build 2024-05-17T11:39:41,331 creating build/lib 2024-05-17T11:39:41,332 creating build/lib/multiqc 2024-05-17T11:39:41,333 copying multiqc/interactive.py -> build/lib/multiqc 2024-05-17T11:39:41,336 copying multiqc/multiqc.py -> build/lib/multiqc 2024-05-17T11:39:41,340 copying multiqc/__main__.py -> build/lib/multiqc 2024-05-17T11:39:41,343 copying multiqc/report.py -> build/lib/multiqc 2024-05-17T11:39:41,347 copying multiqc/__init__.py -> build/lib/multiqc 2024-05-17T11:39:41,348 copying multiqc/base_module.py -> build/lib/multiqc 2024-05-17T11:39:41,351 copying multiqc/config.py -> build/lib/multiqc 2024-05-17T11:39:41,353 running egg_info 2024-05-17T11:39:41,356 writing multiqc.egg-info/PKG-INFO 2024-05-17T11:39:41,362 writing dependency_links to multiqc.egg-info/dependency_links.txt 2024-05-17T11:39:41,369 writing entry points to multiqc.egg-info/entry_points.txt 2024-05-17T11:39:41,372 writing requirements to multiqc.egg-info/requires.txt 2024-05-17T11:39:41,373 writing top-level names to multiqc.egg-info/top_level.txt 2024-05-17T11:39:41,381 reading manifest file 'multiqc.egg-info/SOURCES.txt' 2024-05-17T11:39:41,394 reading manifest template 'MANIFEST.in' 2024-05-17T11:39:41,637 adding license file 'LICENSE' 2024-05-17T11:39:41,661 writing manifest file 'multiqc.egg-info/SOURCES.txt' 2024-05-17T11:39:41,664 /tmp/pip-build-env-u8mgr1go/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'multiqc.core' is absent from the `packages` configuration. 2024-05-17T11:39:41,664 !! 2024-05-17T11:39:41,665 ******************************************************************************** 2024-05-17T11:39:41,666 ############################ 2024-05-17T11:39:41,667 # Package would be ignored # 2024-05-17T11:39:41,667 ############################ 2024-05-17T11:39:41,668 Python recognizes 'multiqc.core' as an importable package[^1], 2024-05-17T11:39:41,669 but it is absent from setuptools' `packages` configuration. 2024-05-17T11:39:41,670 This leads to an ambiguous overall configuration. If you want to distribute this 2024-05-17T11:39:41,671 package, please make sure that 'multiqc.core' is explicitly added 2024-05-17T11:39:41,671 to the `packages` configuration field. 2024-05-17T11:39:41,672 Alternatively, you can also rely on setuptools' discovery methods 2024-05-17T11:39:41,673 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-05-17T11:39:41,674 instead of `find_packages(...)`/`find:`). 2024-05-17T11:39:41,675 You can read more about "package discovery" on setuptools documentation page: 2024-05-17T11:39:41,676 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-05-17T11:39:41,677 If you don't want 'multiqc.core' to be distributed and are 2024-05-17T11:39:41,678 already explicitly excluding 'multiqc.core' via 2024-05-17T11:39:41,678 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-05-17T11:39:41,679 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-05-17T11:39:41,679 combination with a more fine grained `package-data` configuration. 2024-05-17T11:39:41,680 You can read more about "package data files" on setuptools documentation page: 2024-05-17T11:39:41,681 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-05-17T11:39:41,683 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-05-17T11:39:41,683 even if it does not contain any `.py` files. 2024-05-17T11:39:41,684 On the other hand, currently there is no concept of package data 2024-05-17T11:39:41,685 directory, all directories are treated like packages. 2024-05-17T11:39:41,685 ******************************************************************************** 2024-05-17T11:39:41,686 !! 2024-05-17T11:39:41,687 check.warn(importable) 2024-05-17T11:39:41,687 /tmp/pip-build-env-u8mgr1go/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'multiqc.modules' is absent from the `packages` configuration. 2024-05-17T11:39:41,688 !! 2024-05-17T11:39:41,688 ******************************************************************************** 2024-05-17T11:39:41,689 ############################ 2024-05-17T11:39:41,689 # Package would be ignored # 2024-05-17T11:39:41,690 ############################ 2024-05-17T11:39:41,690 Python recognizes 'multiqc.modules' as an importable package[^1], 2024-05-17T11:39:41,690 but it is absent from setuptools' `packages` configuration. 2024-05-17T11:39:41,691 This leads to an ambiguous overall configuration. If you want to distribute this 2024-05-17T11:39:41,691 package, please make sure that 'multiqc.modules' is explicitly added 2024-05-17T11:39:41,692 to the `packages` configuration field. 2024-05-17T11:39:41,693 Alternatively, you can also rely on setuptools' discovery methods 2024-05-17T11:39:41,693 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-05-17T11:39:41,693 instead of `find_packages(...)`/`find:`). 2024-05-17T11:39:41,694 You can read more about "package discovery" on setuptools documentation page: 2024-05-17T11:39:41,695 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-05-17T11:39:41,697 If you don't want 'multiqc.modules' to be distributed and are 2024-05-17T11:39:41,697 already explicitly excluding 'multiqc.modules' via 2024-05-17T11:39:41,698 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-05-17T11:39:41,698 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-05-17T11:39:41,699 combination with a more fine grained `package-data` configuration. 2024-05-17T11:39:41,700 You can read more about "package data files" on setuptools documentation page: 2024-05-17T11:39:41,701 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-05-17T11:39:41,703 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-05-17T11:39:41,703 even if it does not contain any `.py` files. 2024-05-17T11:39:41,704 On the other hand, currently there is no concept of package data 2024-05-17T11:39:41,704 directory, all directories are treated like packages. 2024-05-17T11:39:41,705 ******************************************************************************** 2024-05-17T11:39:41,706 !! 2024-05-17T11:39:41,706 check.warn(importable) 2024-05-17T11:39:41,707 /tmp/pip-build-env-u8mgr1go/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'multiqc.modules.adapterremoval' is absent from the `packages` configuration. 2024-05-17T11:39:41,707 !! 2024-05-17T11:39:41,708 ******************************************************************************** 2024-05-17T11:39:41,709 ############################ 2024-05-17T11:39:41,710 # Package would be ignored # 2024-05-17T11:39:41,710 ############################ 2024-05-17T11:39:41,711 Python recognizes 'multiqc.modules.adapterremoval' as an importable package[^1], 2024-05-17T11:39:41,712 but it is absent from setuptools' `packages` configuration. 2024-05-17T11:39:41,714 This leads to an ambiguous overall configuration. If you want to distribute this 2024-05-17T11:39:41,715 package, please make sure that 'multiqc.modules.adapterremoval' is explicitly added 2024-05-17T11:39:41,715 to the `packages` configuration field. 2024-05-17T11:39:41,718 Alternatively, you can also rely on setuptools' discovery methods 2024-05-17T11:39:41,719 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-05-17T11:39:41,720 instead of `find_packages(...)`/`find:`). 2024-05-17T11:39:41,721 You can read more about "package discovery" on setuptools documentation page: 2024-05-17T11:39:41,723 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-05-17T11:39:41,724 If you don't want 'multiqc.modules.adapterremoval' to be distributed and are 2024-05-17T11:39:41,725 already explicitly excluding 'multiqc.modules.adapterremoval' via 2024-05-17T11:39:41,726 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-05-17T11:39:41,726 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-05-17T11:39:41,726 combination with a more fine grained `package-data` configuration. 2024-05-17T11:39:41,727 You can read more about "package data files" on setuptools documentation page: 2024-05-17T11:39:41,728 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-05-17T11:39:41,729 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-05-17T11:39:41,729 even if it does not contain any `.py` files. 2024-05-17T11:39:41,729 On the other hand, currently there is no concept of package data 2024-05-17T11:39:41,730 directory, all directories are treated like packages. 2024-05-17T11:39:41,730 ******************************************************************************** 2024-05-17T11:39:41,731 !! 2024-05-17T11:39:41,732 check.warn(importable) 2024-05-17T11:39:41,732 /tmp/pip-build-env-u8mgr1go/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'multiqc.modules.afterqc' is absent from the `packages` configuration. 2024-05-17T11:39:41,733 !! 2024-05-17T11:39:41,734 ******************************************************************************** 2024-05-17T11:39:41,735 ############################ 2024-05-17T11:39:41,735 # Package would be ignored # 2024-05-17T11:39:41,736 ############################ 2024-05-17T11:39:41,736 Python recognizes 'multiqc.modules.afterqc' as an importable package[^1], 2024-05-17T11:39:41,737 but it is absent from setuptools' `packages` configuration. 2024-05-17T11:39:41,738 This leads to an ambiguous overall configuration. If you want to distribute this 2024-05-17T11:39:41,738 package, please make sure that 'multiqc.modules.afterqc' is explicitly added 2024-05-17T11:39:41,739 to the `packages` configuration field. 2024-05-17T11:39:41,740 Alternatively, you can also rely on setuptools' discovery methods 2024-05-17T11:39:41,740 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-05-17T11:39:41,741 instead of `find_packages(...)`/`find:`). 2024-05-17T11:39:41,741 You can read more about "package discovery" on setuptools documentation page: 2024-05-17T11:39:41,742 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-05-17T11:39:41,743 If you don't want 'multiqc.modules.afterqc' to be distributed and are 2024-05-17T11:39:41,744 already explicitly excluding 'multiqc.modules.afterqc' via 2024-05-17T11:39:41,744 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-05-17T11:39:41,745 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-05-17T11:39:41,745 combination with a more fine grained `package-data` configuration. 2024-05-17T11:39:41,746 You can read more about "package data files" on setuptools documentation page: 2024-05-17T11:39:41,747 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-05-17T11:39:41,748 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-05-17T11:39:41,749 even if it does not contain any `.py` files. 2024-05-17T11:39:41,749 On the other hand, currently there is no concept of package data 2024-05-17T11:39:41,749 directory, all directories are treated like packages. 2024-05-17T11:39:41,750 ******************************************************************************** 2024-05-17T11:39:41,750 !! 2024-05-17T11:39:41,751 check.warn(importable) 2024-05-17T11:39:41,751 /tmp/pip-build-env-u8mgr1go/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'multiqc.modules.anglerfish' is absent from the `packages` configuration. 2024-05-17T11:39:41,751 !! 2024-05-17T11:39:41,752 ******************************************************************************** 2024-05-17T11:39:41,752 ############################ 2024-05-17T11:39:41,752 # Package would be ignored # 2024-05-17T11:39:41,753 ############################ 2024-05-17T11:39:41,753 Python recognizes 'multiqc.modules.anglerfish' as an importable package[^1], 2024-05-17T11:39:41,753 but it is absent from setuptools' `packages` configuration. 2024-05-17T11:39:41,754 This leads to an ambiguous overall configuration. If you want to distribute this 2024-05-17T11:39:41,755 package, please make sure that 'multiqc.modules.anglerfish' is explicitly added 2024-05-17T11:39:41,755 to the `packages` configuration field. 2024-05-17T11:39:41,756 Alternatively, you can also rely on setuptools' discovery methods 2024-05-17T11:39:41,757 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-05-17T11:39:41,757 instead of `find_packages(...)`/`find:`). 2024-05-17T11:39:41,758 You can read more about "package discovery" on setuptools documentation page: 2024-05-17T11:39:41,759 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-05-17T11:39:41,761 If you don't want 'multiqc.modules.anglerfish' to be distributed and are 2024-05-17T11:39:41,761 already explicitly excluding 'multiqc.modules.anglerfish' via 2024-05-17T11:39:41,762 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-05-17T11:39:41,763 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-05-17T11:39:41,763 combination with a more fine grained `package-data` configuration. 2024-05-17T11:39:41,764 You can read more about "package data files" on setuptools documentation page: 2024-05-17T11:39:41,765 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-05-17T11:39:41,767 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-05-17T11:39:41,768 even if it does not contain any `.py` files. 2024-05-17T11:39:41,769 On the other hand, currently there is no concept of package data 2024-05-17T11:39:41,771 directory, all directories are treated like packages. 2024-05-17T11:39:41,771 ******************************************************************************** 2024-05-17T11:39:41,772 !! 2024-05-17T11:39:41,773 check.warn(importable) 2024-05-17T11:39:41,773 /tmp/pip-build-env-u8mgr1go/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'multiqc.modules.bakta' is absent from the `packages` configuration. 2024-05-17T11:39:41,774 !! 2024-05-17T11:39:41,775 ******************************************************************************** 2024-05-17T11:39:41,775 ############################ 2024-05-17T11:39:41,776 # Package would be ignored # 2024-05-17T11:39:41,777 ############################ 2024-05-17T11:39:41,777 Python recognizes 'multiqc.modules.bakta' as an importable package[^1], 2024-05-17T11:39:41,777 but it is absent from setuptools' `packages` configuration. 2024-05-17T11:39:41,778 This leads to an ambiguous overall configuration. If you want to distribute this 2024-05-17T11:39:41,778 package, please make sure that 'multiqc.modules.bakta' is explicitly added 2024-05-17T11:39:41,778 to the `packages` configuration field. 2024-05-17T11:39:41,779 Alternatively, you can also rely on setuptools' discovery methods 2024-05-17T11:39:41,780 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-05-17T11:39:41,780 instead of `find_packages(...)`/`find:`). 2024-05-17T11:39:41,780 You can read more about "package discovery" on setuptools documentation page: 2024-05-17T11:39:41,781 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-05-17T11:39:41,782 If you don't want 'multiqc.modules.bakta' to be distributed and are 2024-05-17T11:39:41,782 already explicitly excluding 'multiqc.modules.bakta' via 2024-05-17T11:39:41,783 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-05-17T11:39:41,783 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-05-17T11:39:41,784 combination with a more fine grained `package-data` configuration. 2024-05-17T11:39:41,784 You can read more about "package data files" on setuptools documentation page: 2024-05-17T11:39:41,785 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-05-17T11:39:41,787 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-05-17T11:39:41,788 even if it does not contain any `.py` files. 2024-05-17T11:39:41,788 On the other hand, currently there is no concept of package data 2024-05-17T11:39:41,789 directory, all directories are treated like packages. 2024-05-17T11:39:41,789 ******************************************************************************** 2024-05-17T11:39:41,790 !! 2024-05-17T11:39:41,791 check.warn(importable) 2024-05-17T11:39:41,792 /tmp/pip-build-env-u8mgr1go/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'multiqc.modules.bamdst' is absent from the `packages` configuration. 2024-05-17T11:39:41,792 !! 2024-05-17T11:39:41,794 ******************************************************************************** 2024-05-17T11:39:41,795 ############################ 2024-05-17T11:39:41,796 # Package would be ignored # 2024-05-17T11:39:41,796 ############################ 2024-05-17T11:39:41,797 Python recognizes 'multiqc.modules.bamdst' as an importable package[^1], 2024-05-17T11:39:41,798 but it is absent from setuptools' `packages` configuration. 2024-05-17T11:39:41,799 This leads to an ambiguous overall configuration. If you want to distribute this 2024-05-17T11:39:41,800 package, please make sure that 'multiqc.modules.bamdst' is explicitly added 2024-05-17T11:39:41,801 to the `packages` configuration field. 2024-05-17T11:39:41,803 Alternatively, you can also rely on setuptools' discovery methods 2024-05-17T11:39:41,804 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-05-17T11:39:41,805 instead of `find_packages(...)`/`find:`). 2024-05-17T11:39:41,807 You can read more about "package discovery" on setuptools documentation page: 2024-05-17T11:39:41,810 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-05-17T11:39:41,811 If you don't want 'multiqc.modules.bamdst' to be distributed and are 2024-05-17T11:39:41,812 already explicitly excluding 'multiqc.modules.bamdst' via 2024-05-17T11:39:41,813 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-05-17T11:39:41,814 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-05-17T11:39:41,814 combination with a more fine grained `package-data` configuration. 2024-05-17T11:39:41,816 You can read more about "package data files" on setuptools documentation page: 2024-05-17T11:39:41,817 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-05-17T11:39:41,818 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-05-17T11:39:41,819 even if it does not contain any `.py` files. 2024-05-17T11:39:41,819 On the other hand, currently there is no concept of package data 2024-05-17T11:39:41,820 directory, all directories are treated like packages. 2024-05-17T11:39:41,821 ******************************************************************************** 2024-05-17T11:39:41,822 !! 2024-05-17T11:39:41,822 check.warn(importable) 2024-05-17T11:39:41,823 /tmp/pip-build-env-u8mgr1go/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'multiqc.modules.bamtools' is absent from the `packages` configuration. 2024-05-17T11:39:41,824 !! 2024-05-17T11:39:41,825 ******************************************************************************** 2024-05-17T11:39:41,826 ############################ 2024-05-17T11:39:41,827 # Package would be ignored # 2024-05-17T11:39:41,827 ############################ 2024-05-17T11:39:41,828 Python recognizes 'multiqc.modules.bamtools' as an importable package[^1], 2024-05-17T11:39:41,829 but it is absent from setuptools' `packages` configuration. 2024-05-17T11:39:41,831 This leads to an ambiguous overall configuration. If you want to distribute this 2024-05-17T11:39:41,832 package, please make sure that 'multiqc.modules.bamtools' is explicitly added 2024-05-17T11:39:41,833 to the `packages` configuration field. 2024-05-17T11:39:41,835 Alternatively, you can also rely on setuptools' discovery methods 2024-05-17T11:39:41,836 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-05-17T11:39:41,837 instead of `find_packages(...)`/`find:`). 2024-05-17T11:39:41,839 You can read more about "package discovery" on setuptools documentation page: 2024-05-17T11:39:41,840 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-05-17T11:39:41,842 If you don't want 'multiqc.modules.bamtools' to be distributed and are 2024-05-17T11:39:41,843 already explicitly excluding 'multiqc.modules.bamtools' via 2024-05-17T11:39:41,844 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-05-17T11:39:41,845 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-05-17T11:39:41,845 combination with a more fine grained `package-data` configuration. 2024-05-17T11:39:41,846 You can read more about "package data files" on setuptools documentation page: 2024-05-17T11:39:41,847 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-05-17T11:39:41,849 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-05-17T11:39:41,849 even if it does not contain any `.py` files. 2024-05-17T11:39:41,850 On the other hand, currently there is no concept of package data 2024-05-17T11:39:41,850 directory, all directories are treated like packages. 2024-05-17T11:39:41,852 ******************************************************************************** 2024-05-17T11:39:41,853 !! 2024-05-17T11:39:41,853 check.warn(importable) 2024-05-17T11:39:41,854 /tmp/pip-build-env-u8mgr1go/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'multiqc.modules.bbduk' is absent from the `packages` configuration. 2024-05-17T11:39:41,855 !! 2024-05-17T11:39:41,855 ******************************************************************************** 2024-05-17T11:39:41,856 ############################ 2024-05-17T11:39:41,856 # Package would be ignored # 2024-05-17T11:39:41,856 ############################ 2024-05-17T11:39:41,857 Python recognizes 'multiqc.modules.bbduk' as an importable package[^1], 2024-05-17T11:39:41,857 but it is absent from setuptools' `packages` configuration. 2024-05-17T11:39:41,858 This leads to an ambiguous overall configuration. If you want to distribute this 2024-05-17T11:39:41,858 package, please make sure that 'multiqc.modules.bbduk' is explicitly added 2024-05-17T11:39:41,859 to the `packages` configuration field. 2024-05-17T11:39:41,859 Alternatively, you can also rely on setuptools' discovery methods 2024-05-17T11:39:41,860 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-05-17T11:39:41,860 instead of `find_packages(...)`/`find:`). 2024-05-17T11:39:41,861 You can read more about "package discovery" on setuptools documentation page: 2024-05-17T11:39:41,861 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-05-17T11:39:41,862 If you don't want 'multiqc.modules.bbduk' to be distributed and are 2024-05-17T11:39:41,862 already explicitly excluding 'multiqc.modules.bbduk' via 2024-05-17T11:39:41,863 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-05-17T11:39:41,864 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-05-17T11:39:41,864 combination with a more fine grained `package-data` configuration. 2024-05-17T11:39:41,865 You can read more about "package data files" on setuptools documentation page: 2024-05-17T11:39:41,867 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-05-17T11:39:41,869 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-05-17T11:39:41,869 even if it does not contain any `.py` files. 2024-05-17T11:39:41,870 On the other hand, currently there is no concept of package data 2024-05-17T11:39:41,871 directory, all directories are treated like packages. 2024-05-17T11:39:41,871 ******************************************************************************** 2024-05-17T11:39:41,872 !! 2024-05-17T11:39:41,873 check.warn(importable) 2024-05-17T11:39:41,874 /tmp/pip-build-env-u8mgr1go/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'multiqc.modules.bbmap' is absent from the `packages` configuration. 2024-05-17T11:39:41,874 !! 2024-05-17T11:39:41,875 ******************************************************************************** 2024-05-17T11:39:41,876 ############################ 2024-05-17T11:39:41,876 # Package would be ignored # 2024-05-17T11:39:41,877 ############################ 2024-05-17T11:39:41,877 Python recognizes 'multiqc.modules.bbmap' as an importable package[^1], 2024-05-17T11:39:41,878 but it is absent from setuptools' `packages` configuration. 2024-05-17T11:39:41,879 This leads to an ambiguous overall configuration. If you want to distribute this 2024-05-17T11:39:41,879 package, please make sure that 'multiqc.modules.bbmap' is explicitly added 2024-05-17T11:39:41,880 to the `packages` configuration field. 2024-05-17T11:39:41,881 Alternatively, you can also rely on setuptools' discovery methods 2024-05-17T11:39:41,881 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-05-17T11:39:41,882 instead of `find_packages(...)`/`find:`). 2024-05-17T11:39:41,883 You can read more about "package discovery" on setuptools documentation page: 2024-05-17T11:39:41,884 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-05-17T11:39:41,884 If you don't want 'multiqc.modules.bbmap' to be distributed and are 2024-05-17T11:39:41,885 already explicitly excluding 'multiqc.modules.bbmap' via 2024-05-17T11:39:41,885 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-05-17T11:39:41,885 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-05-17T11:39:41,886 combination with a more fine grained `package-data` configuration. 2024-05-17T11:39:41,886 You can read more about "package data files" on setuptools documentation page: 2024-05-17T11:39:41,887 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-05-17T11:39:41,888 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-05-17T11:39:41,889 even if it does not contain any `.py` files. 2024-05-17T11:39:41,889 On the other hand, currently there is no concept of package data 2024-05-17T11:39:41,889 directory, all directories are treated like packages. 2024-05-17T11:39:41,890 ******************************************************************************** 2024-05-17T11:39:41,890 !! 2024-05-17T11:39:41,891 check.warn(importable) 2024-05-17T11:39:41,891 /tmp/pip-build-env-u8mgr1go/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'multiqc.modules.bcftools' is absent from the `packages` configuration. 2024-05-17T11:39:41,892 !! 2024-05-17T11:39:41,893 ******************************************************************************** 2024-05-17T11:39:41,893 ############################ 2024-05-17T11:39:41,894 # Package would be ignored # 2024-05-17T11:39:41,894 ############################ 2024-05-17T11:39:41,895 Python recognizes 'multiqc.modules.bcftools' as an importable package[^1], 2024-05-17T11:39:41,895 but it is absent from setuptools' `packages` configuration. 2024-05-17T11:39:41,896 This leads to an ambiguous overall configuration. If you want to distribute this 2024-05-17T11:39:41,897 package, please make sure that 'multiqc.modules.bcftools' is explicitly added 2024-05-17T11:39:41,897 to the `packages` configuration field. 2024-05-17T11:39:41,898 Alternatively, you can also rely on setuptools' discovery methods 2024-05-17T11:39:41,899 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-05-17T11:39:41,900 instead of `find_packages(...)`/`find:`). 2024-05-17T11:39:41,901 You can read more about "package discovery" on setuptools documentation page: 2024-05-17T11:39:41,901 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-05-17T11:39:41,902 If you don't want 'multiqc.modules.bcftools' to be distributed and are 2024-05-17T11:39:41,903 already explicitly excluding 'multiqc.modules.bcftools' via 2024-05-17T11:39:41,903 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-05-17T11:39:41,904 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-05-17T11:39:41,904 combination with a more fine grained `package-data` configuration. 2024-05-17T11:39:41,905 You can read more about "package data files" on setuptools documentation page: 2024-05-17T11:39:41,906 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-05-17T11:39:41,908 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-05-17T11:39:41,908 even if it does not contain any `.py` files. 2024-05-17T11:39:41,909 On the other hand, currently there is no concept of package data 2024-05-17T11:39:41,910 directory, all directories are treated like packages. 2024-05-17T11:39:41,910 ******************************************************************************** 2024-05-17T11:39:41,911 !! 2024-05-17T11:39:41,911 check.warn(importable) 2024-05-17T11:39:41,912 /tmp/pip-build-env-u8mgr1go/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'multiqc.modules.bcl2fastq' is absent from the `packages` configuration. 2024-05-17T11:39:41,912 !! 2024-05-17T11:39:41,913 ******************************************************************************** 2024-05-17T11:39:41,913 ############################ 2024-05-17T11:39:41,913 # Package would be ignored # 2024-05-17T11:39:41,914 ############################ 2024-05-17T11:39:41,914 Python recognizes 'multiqc.modules.bcl2fastq' as an importable package[^1], 2024-05-17T11:39:41,914 but it is absent from setuptools' `packages` configuration. 2024-05-17T11:39:41,915 This leads to an ambiguous overall configuration. If you want to distribute this 2024-05-17T11:39:41,916 package, please make sure that 'multiqc.modules.bcl2fastq' is explicitly added 2024-05-17T11:39:41,916 to the `packages` configuration field. 2024-05-17T11:39:41,917 Alternatively, you can also rely on setuptools' discovery methods 2024-05-17T11:39:41,917 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-05-17T11:39:41,918 instead of `find_packages(...)`/`find:`). 2024-05-17T11:39:41,919 You can read more about "package discovery" on setuptools documentation page: 2024-05-17T11:39:41,920 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-05-17T11:39:41,921 If you don't want 'multiqc.modules.bcl2fastq' to be distributed and are 2024-05-17T11:39:41,921 already explicitly excluding 'multiqc.modules.bcl2fastq' via 2024-05-17T11:39:41,922 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-05-17T11:39:41,922 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-05-17T11:39:41,923 combination with a more fine grained `package-data` configuration. 2024-05-17T11:39:41,924 You can read more about "package data files" on setuptools documentation page: 2024-05-17T11:39:41,926 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-05-17T11:39:41,928 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-05-17T11:39:41,928 even if it does not contain any `.py` files. 2024-05-17T11:39:41,929 On the other hand, currently there is no concept of package data 2024-05-17T11:39:41,929 directory, all directories are treated like packages. 2024-05-17T11:39:41,930 ******************************************************************************** 2024-05-17T11:39:41,931 !! 2024-05-17T11:39:41,931 check.warn(importable) 2024-05-17T11:39:41,932 /tmp/pip-build-env-u8mgr1go/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'multiqc.modules.bclconvert' is absent from the `packages` configuration. 2024-05-17T11:39:41,932 !! 2024-05-17T11:39:41,933 ******************************************************************************** 2024-05-17T11:39:41,934 ############################ 2024-05-17T11:39:41,934 # Package would be ignored # 2024-05-17T11:39:41,935 ############################ 2024-05-17T11:39:41,935 Python recognizes 'multiqc.modules.bclconvert' as an importable package[^1], 2024-05-17T11:39:41,936 but it is absent from setuptools' `packages` configuration. 2024-05-17T11:39:41,937 This leads to an ambiguous overall configuration. If you want to distribute this 2024-05-17T11:39:41,937 package, please make sure that 'multiqc.modules.bclconvert' is explicitly added 2024-05-17T11:39:41,938 to the `packages` configuration field. 2024-05-17T11:39:41,938 Alternatively, you can also rely on setuptools' discovery methods 2024-05-17T11:39:41,939 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-05-17T11:39:41,939 instead of `find_packages(...)`/`find:`). 2024-05-17T11:39:41,940 You can read more about "package discovery" on setuptools documentation page: 2024-05-17T11:39:41,940 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-05-17T11:39:41,941 If you don't want 'multiqc.modules.bclconvert' to be distributed and are 2024-05-17T11:39:41,941 already explicitly excluding 'multiqc.modules.bclconvert' via 2024-05-17T11:39:41,942 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-05-17T11:39:41,942 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-05-17T11:39:41,943 combination with a more fine grained `package-data` configuration. 2024-05-17T11:39:41,944 You can read more about "package data files" on setuptools documentation page: 2024-05-17T11:39:41,945 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-05-17T11:39:41,946 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-05-17T11:39:41,946 even if it does not contain any `.py` files. 2024-05-17T11:39:41,947 On the other hand, currently there is no concept of package data 2024-05-17T11:39:41,947 directory, all directories are treated like packages. 2024-05-17T11:39:41,948 ******************************************************************************** 2024-05-17T11:39:41,949 !! 2024-05-17T11:39:41,950 check.warn(importable) 2024-05-17T11:39:41,950 /tmp/pip-build-env-u8mgr1go/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'multiqc.modules.biobambam2' is absent from the `packages` configuration. 2024-05-17T11:39:41,951 !! 2024-05-17T11:39:41,952 ******************************************************************************** 2024-05-17T11:39:41,952 ############################ 2024-05-17T11:39:41,953 # Package would be ignored # 2024-05-17T11:39:41,953 ############################ 2024-05-17T11:39:41,954 Python recognizes 'multiqc.modules.biobambam2' as an importable package[^1], 2024-05-17T11:39:41,954 but it is absent from setuptools' `packages` configuration. 2024-05-17T11:39:41,956 This leads to an ambiguous overall configuration. If you want to distribute this 2024-05-17T11:39:41,956 package, please make sure that 'multiqc.modules.biobambam2' is explicitly added 2024-05-17T11:39:41,956 to the `packages` configuration field. 2024-05-17T11:39:41,957 Alternatively, you can also rely on setuptools' discovery methods 2024-05-17T11:39:41,958 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-05-17T11:39:41,958 instead of `find_packages(...)`/`find:`). 2024-05-17T11:39:41,959 You can read more about "package discovery" on setuptools documentation page: 2024-05-17T11:39:41,960 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-05-17T11:39:41,961 If you don't want 'multiqc.modules.biobambam2' to be distributed and are 2024-05-17T11:39:41,962 already explicitly excluding 'multiqc.modules.biobambam2' via 2024-05-17T11:39:41,962 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-05-17T11:39:41,963 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-05-17T11:39:41,964 combination with a more fine grained `package-data` configuration. 2024-05-17T11:39:41,965 You can read more about "package data files" on setuptools documentation page: 2024-05-17T11:39:41,965 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-05-17T11:39:41,966 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-05-17T11:39:41,967 even if it does not contain any `.py` files. 2024-05-17T11:39:41,967 On the other hand, currently there is no concept of package data 2024-05-17T11:39:41,967 directory, all directories are treated like packages. 2024-05-17T11:39:41,968 ******************************************************************************** 2024-05-17T11:39:41,968 !! 2024-05-17T11:39:41,969 check.warn(importable) 2024-05-17T11:39:41,969 /tmp/pip-build-env-u8mgr1go/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'multiqc.modules.biobloomtools' is absent from the `packages` configuration. 2024-05-17T11:39:41,969 !! 2024-05-17T11:39:41,970 ******************************************************************************** 2024-05-17T11:39:41,971 ############################ 2024-05-17T11:39:41,971 # Package would be ignored # 2024-05-17T11:39:41,971 ############################ 2024-05-17T11:39:41,972 Python recognizes 'multiqc.modules.biobloomtools' as an importable package[^1], 2024-05-17T11:39:41,972 but it is absent from setuptools' `packages` configuration. 2024-05-17T11:39:41,973 This leads to an ambiguous overall configuration. If you want to distribute this 2024-05-17T11:39:41,973 package, please make sure that 'multiqc.modules.biobloomtools' is explicitly added 2024-05-17T11:39:41,974 to the `packages` configuration field. 2024-05-17T11:39:41,975 Alternatively, you can also rely on setuptools' discovery methods 2024-05-17T11:39:41,975 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-05-17T11:39:41,976 instead of `find_packages(...)`/`find:`). 2024-05-17T11:39:41,977 You can read more about "package discovery" on setuptools documentation page: 2024-05-17T11:39:41,978 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-05-17T11:39:41,979 If you don't want 'multiqc.modules.biobloomtools' to be distributed and are 2024-05-17T11:39:41,979 already explicitly excluding 'multiqc.modules.biobloomtools' via 2024-05-17T11:39:41,980 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-05-17T11:39:41,980 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-05-17T11:39:41,981 combination with a more fine grained `package-data` configuration. 2024-05-17T11:39:41,982 You can read more about "package data files" on setuptools documentation page: 2024-05-17T11:39:41,983 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-05-17T11:39:41,984 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-05-17T11:39:41,985 even if it does not contain any `.py` files. 2024-05-17T11:39:41,985 On the other hand, currently there is no concept of package data 2024-05-17T11:39:41,986 directory, all directories are treated like packages. 2024-05-17T11:39:41,986 ******************************************************************************** 2024-05-17T11:39:41,987 !! 2024-05-17T11:39:41,988 check.warn(importable) 2024-05-17T11:39:41,988 /tmp/pip-build-env-u8mgr1go/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'multiqc.modules.biscuit' is absent from the `packages` configuration. 2024-05-17T11:39:41,989 !! 2024-05-17T11:39:41,990 ******************************************************************************** 2024-05-17T11:39:41,991 ############################ 2024-05-17T11:39:41,991 # Package would be ignored # 2024-05-17T11:39:41,991 ############################ 2024-05-17T11:39:41,992 Python recognizes 'multiqc.modules.biscuit' as an importable package[^1], 2024-05-17T11:39:41,992 but it is absent from setuptools' `packages` configuration. 2024-05-17T11:39:41,993 This leads to an ambiguous overall configuration. If you want to distribute this 2024-05-17T11:39:41,993 package, please make sure that 'multiqc.modules.biscuit' is explicitly added 2024-05-17T11:39:41,993 to the `packages` configuration field. 2024-05-17T11:39:41,994 Alternatively, you can also rely on setuptools' discovery methods 2024-05-17T11:39:41,994 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-05-17T11:39:41,995 instead of `find_packages(...)`/`find:`). 2024-05-17T11:39:41,996 You can read more about "package discovery" on setuptools documentation page: 2024-05-17T11:39:41,996 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-05-17T11:39:41,997 If you don't want 'multiqc.modules.biscuit' to be distributed and are 2024-05-17T11:39:41,998 already explicitly excluding 'multiqc.modules.biscuit' via 2024-05-17T11:39:41,998 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-05-17T11:39:41,998 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-05-17T11:39:41,999 combination with a more fine grained `package-data` configuration. 2024-05-17T11:39:42,000 You can read more about "package data files" on setuptools documentation page: 2024-05-17T11:39:42,001 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-05-17T11:39:42,002 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-05-17T11:39:42,003 even if it does not contain any `.py` files. 2024-05-17T11:39:42,004 On the other hand, currently there is no concept of package data 2024-05-17T11:39:42,004 directory, all directories are treated like packages. 2024-05-17T11:39:42,005 ******************************************************************************** 2024-05-17T11:39:42,006 !! 2024-05-17T11:39:42,007 check.warn(importable) 2024-05-17T11:39:42,007 /tmp/pip-build-env-u8mgr1go/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'multiqc.modules.bismark' is absent from the `packages` configuration. 2024-05-17T11:39:42,008 !! 2024-05-17T11:39:42,009 ******************************************************************************** 2024-05-17T11:39:42,009 ############################ 2024-05-17T11:39:42,010 # Package would be ignored # 2024-05-17T11:39:42,010 ############################ 2024-05-17T11:39:42,011 Python recognizes 'multiqc.modules.bismark' as an importable package[^1], 2024-05-17T11:39:42,011 but it is absent from setuptools' `packages` configuration. 2024-05-17T11:39:42,012 This leads to an ambiguous overall configuration. If you want to distribute this 2024-05-17T11:39:42,013 package, please make sure that 'multiqc.modules.bismark' is explicitly added 2024-05-17T11:39:42,013 to the `packages` configuration field. 2024-05-17T11:39:42,014 Alternatively, you can also rely on setuptools' discovery methods 2024-05-17T11:39:42,015 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-05-17T11:39:42,015 instead of `find_packages(...)`/`find:`). 2024-05-17T11:39:42,017 You can read more about "package discovery" on setuptools documentation page: 2024-05-17T11:39:42,019 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-05-17T11:39:42,020 If you don't want 'multiqc.modules.bismark' to be distributed and are 2024-05-17T11:39:42,020 already explicitly excluding 'multiqc.modules.bismark' via 2024-05-17T11:39:42,021 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-05-17T11:39:42,021 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-05-17T11:39:42,022 combination with a more fine grained `package-data` configuration. 2024-05-17T11:39:42,023 You can read more about "package data files" on setuptools documentation page: 2024-05-17T11:39:42,024 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-05-17T11:39:42,026 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-05-17T11:39:42,026 even if it does not contain any `.py` files. 2024-05-17T11:39:42,027 On the other hand, currently there is no concept of package data 2024-05-17T11:39:42,027 directory, all directories are treated like packages. 2024-05-17T11:39:42,028 ******************************************************************************** 2024-05-17T11:39:42,029 !! 2024-05-17T11:39:42,029 check.warn(importable) 2024-05-17T11:39:42,030 /tmp/pip-build-env-u8mgr1go/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'multiqc.modules.bowtie1' is absent from the `packages` configuration. 2024-05-17T11:39:42,030 !! 2024-05-17T11:39:42,031 ******************************************************************************** 2024-05-17T11:39:42,032 ############################ 2024-05-17T11:39:42,032 # Package would be ignored # 2024-05-17T11:39:42,033 ############################ 2024-05-17T11:39:42,034 Python recognizes 'multiqc.modules.bowtie1' as an importable package[^1], 2024-05-17T11:39:42,034 but it is absent from setuptools' `packages` configuration. 2024-05-17T11:39:42,036 This leads to an ambiguous overall configuration. If you want to distribute this 2024-05-17T11:39:42,037 package, please make sure that 'multiqc.modules.bowtie1' is explicitly added 2024-05-17T11:39:42,037 to the `packages` configuration field. 2024-05-17T11:39:42,039 Alternatively, you can also rely on setuptools' discovery methods 2024-05-17T11:39:42,039 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-05-17T11:39:42,040 instead of `find_packages(...)`/`find:`). 2024-05-17T11:39:42,041 You can read more about "package discovery" on setuptools documentation page: 2024-05-17T11:39:42,042 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-05-17T11:39:42,044 If you don't want 'multiqc.modules.bowtie1' to be distributed and are 2024-05-17T11:39:42,044 already explicitly excluding 'multiqc.modules.bowtie1' via 2024-05-17T11:39:42,045 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-05-17T11:39:42,045 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-05-17T11:39:42,046 combination with a more fine grained `package-data` configuration. 2024-05-17T11:39:42,047 You can read more about "package data files" on setuptools documentation page: 2024-05-17T11:39:42,048 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-05-17T11:39:42,050 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-05-17T11:39:42,051 even if it does not contain any `.py` files. 2024-05-17T11:39:42,052 On the other hand, currently there is no concept of package data 2024-05-17T11:39:42,052 directory, all directories are treated like packages. 2024-05-17T11:39:42,053 ******************************************************************************** 2024-05-17T11:39:42,054 !! 2024-05-17T11:39:42,055 check.warn(importable) 2024-05-17T11:39:42,055 /tmp/pip-build-env-u8mgr1go/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'multiqc.modules.bowtie2' is absent from the `packages` configuration. 2024-05-17T11:39:42,056 !! 2024-05-17T11:39:42,057 ******************************************************************************** 2024-05-17T11:39:42,057 ############################ 2024-05-17T11:39:42,058 # Package would be ignored # 2024-05-17T11:39:42,058 ############################ 2024-05-17T11:39:42,059 Python recognizes 'multiqc.modules.bowtie2' as an importable package[^1], 2024-05-17T11:39:42,059 but it is absent from setuptools' `packages` configuration. 2024-05-17T11:39:42,060 This leads to an ambiguous overall configuration. If you want to distribute this 2024-05-17T11:39:42,061 package, please make sure that 'multiqc.modules.bowtie2' is explicitly added 2024-05-17T11:39:42,061 to the `packages` configuration field. 2024-05-17T11:39:42,062 Alternatively, you can also rely on setuptools' discovery methods 2024-05-17T11:39:42,063 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-05-17T11:39:42,064 instead of `find_packages(...)`/`find:`). 2024-05-17T11:39:42,065 You can read more about "package discovery" on setuptools documentation page: 2024-05-17T11:39:42,066 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-05-17T11:39:42,067 If you don't want 'multiqc.modules.bowtie2' to be distributed and are 2024-05-17T11:39:42,068 already explicitly excluding 'multiqc.modules.bowtie2' via 2024-05-17T11:39:42,068 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-05-17T11:39:42,069 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-05-17T11:39:42,070 combination with a more fine grained `package-data` configuration. 2024-05-17T11:39:42,071 You can read more about "package data files" on setuptools documentation page: 2024-05-17T11:39:42,072 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-05-17T11:39:42,074 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-05-17T11:39:42,075 even if it does not contain any `.py` files. 2024-05-17T11:39:42,076 On the other hand, currently there is no concept of package data 2024-05-17T11:39:42,076 directory, all directories are treated like packages. 2024-05-17T11:39:42,077 ******************************************************************************** 2024-05-17T11:39:42,078 !! 2024-05-17T11:39:42,079 check.warn(importable) 2024-05-17T11:39:42,079 /tmp/pip-build-env-u8mgr1go/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'multiqc.modules.bracken' is absent from the `packages` configuration. 2024-05-17T11:39:42,080 !! 2024-05-17T11:39:42,081 ******************************************************************************** 2024-05-17T11:39:42,082 ############################ 2024-05-17T11:39:42,082 # Package would be ignored # 2024-05-17T11:39:42,083 ############################ 2024-05-17T11:39:42,083 Python recognizes 'multiqc.modules.bracken' as an importable package[^1], 2024-05-17T11:39:42,084 but it is absent from setuptools' `packages` configuration. 2024-05-17T11:39:42,085 This leads to an ambiguous overall configuration. If you want to distribute this 2024-05-17T11:39:42,086 package, please make sure that 'multiqc.modules.bracken' is explicitly added 2024-05-17T11:39:42,087 to the `packages` configuration field. 2024-05-17T11:39:42,088 Alternatively, you can also rely on setuptools' discovery methods 2024-05-17T11:39:42,089 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-05-17T11:39:42,089 instead of `find_packages(...)`/`find:`). 2024-05-17T11:39:42,090 You can read more about "package discovery" on setuptools documentation page: 2024-05-17T11:39:42,091 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-05-17T11:39:42,092 If you don't want 'multiqc.modules.bracken' to be distributed and are 2024-05-17T11:39:42,093 already explicitly excluding 'multiqc.modules.bracken' via 2024-05-17T11:39:42,093 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-05-17T11:39:42,094 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-05-17T11:39:42,094 combination with a more fine grained `package-data` configuration. 2024-05-17T11:39:42,095 You can read more about "package data files" on setuptools documentation page: 2024-05-17T11:39:42,096 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-05-17T11:39:42,098 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-05-17T11:39:42,098 even if it does not contain any `.py` files. 2024-05-17T11:39:42,099 On the other hand, currently there is no concept of package data 2024-05-17T11:39:42,099 directory, all directories are treated like packages. 2024-05-17T11:39:42,100 ******************************************************************************** 2024-05-17T11:39:42,101 !! 2024-05-17T11:39:42,102 check.warn(importable) 2024-05-17T11:39:42,103 /tmp/pip-build-env-u8mgr1go/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'multiqc.modules.busco' is absent from the `packages` configuration. 2024-05-17T11:39:42,103 !! 2024-05-17T11:39:42,105 ******************************************************************************** 2024-05-17T11:39:42,106 ############################ 2024-05-17T11:39:42,107 # Package would be ignored # 2024-05-17T11:39:42,107 ############################ 2024-05-17T11:39:42,108 Python recognizes 'multiqc.modules.busco' as an importable package[^1], 2024-05-17T11:39:42,109 but it is absent from setuptools' `packages` configuration. 2024-05-17T11:39:42,110 This leads to an ambiguous overall configuration. If you want to distribute this 2024-05-17T11:39:42,111 package, please make sure that 'multiqc.modules.busco' is explicitly added 2024-05-17T11:39:42,112 to the `packages` configuration field. 2024-05-17T11:39:42,113 Alternatively, you can also rely on setuptools' discovery methods 2024-05-17T11:39:42,113 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-05-17T11:39:42,114 instead of `find_packages(...)`/`find:`). 2024-05-17T11:39:42,116 You can read more about "package discovery" on setuptools documentation page: 2024-05-17T11:39:42,117 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-05-17T11:39:42,118 If you don't want 'multiqc.modules.busco' to be distributed and are 2024-05-17T11:39:42,119 already explicitly excluding 'multiqc.modules.busco' via 2024-05-17T11:39:42,120 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-05-17T11:39:42,120 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-05-17T11:39:42,121 combination with a more fine grained `package-data` configuration. 2024-05-17T11:39:42,122 You can read more about "package data files" on setuptools documentation page: 2024-05-17T11:39:42,123 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-05-17T11:39:42,125 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-05-17T11:39:42,126 even if it does not contain any `.py` files. 2024-05-17T11:39:42,126 On the other hand, currently there is no concept of package data 2024-05-17T11:39:42,127 directory, all directories are treated like packages. 2024-05-17T11:39:42,127 ******************************************************************************** 2024-05-17T11:39:42,128 !! 2024-05-17T11:39:42,129 check.warn(importable) 2024-05-17T11:39:42,129 /tmp/pip-build-env-u8mgr1go/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'multiqc.modules.bustools' is absent from the `packages` configuration. 2024-05-17T11:39:42,129 !! 2024-05-17T11:39:42,130 ******************************************************************************** 2024-05-17T11:39:42,131 ############################ 2024-05-17T11:39:42,131 # Package would be ignored # 2024-05-17T11:39:42,132 ############################ 2024-05-17T11:39:42,132 Python recognizes 'multiqc.modules.bustools' as an importable package[^1], 2024-05-17T11:39:42,132 but it is absent from setuptools' `packages` configuration. 2024-05-17T11:39:42,133 This leads to an ambiguous overall configuration. If you want to distribute this 2024-05-17T11:39:42,134 package, please make sure that 'multiqc.modules.bustools' is explicitly added 2024-05-17T11:39:42,134 to the `packages` configuration field. 2024-05-17T11:39:42,135 Alternatively, you can also rely on setuptools' discovery methods 2024-05-17T11:39:42,136 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-05-17T11:39:42,136 instead of `find_packages(...)`/`find:`). 2024-05-17T11:39:42,137 You can read more about "package discovery" on setuptools documentation page: 2024-05-17T11:39:42,139 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-05-17T11:39:42,140 If you don't want 'multiqc.modules.bustools' to be distributed and are 2024-05-17T11:39:42,140 already explicitly excluding 'multiqc.modules.bustools' via 2024-05-17T11:39:42,141 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-05-17T11:39:42,141 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-05-17T11:39:42,142 combination with a more fine grained `package-data` configuration. 2024-05-17T11:39:42,143 You can read more about "package data files" on setuptools documentation page: 2024-05-17T11:39:42,145 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-05-17T11:39:42,146 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-05-17T11:39:42,147 even if it does not contain any `.py` files. 2024-05-17T11:39:42,148 On the other hand, currently there is no concept of package data 2024-05-17T11:39:42,149 directory, all directories are treated like packages. 2024-05-17T11:39:42,149 ******************************************************************************** 2024-05-17T11:39:42,151 !! 2024-05-17T11:39:42,151 check.warn(importable) 2024-05-17T11:39:42,152 /tmp/pip-build-env-u8mgr1go/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'multiqc.modules.ccs' is absent from the `packages` configuration. 2024-05-17T11:39:42,153 !! 2024-05-17T11:39:42,154 ******************************************************************************** 2024-05-17T11:39:42,155 ############################ 2024-05-17T11:39:42,156 # Package would be ignored # 2024-05-17T11:39:42,157 ############################ 2024-05-17T11:39:42,157 Python recognizes 'multiqc.modules.ccs' as an importable package[^1], 2024-05-17T11:39:42,158 but it is absent from setuptools' `packages` configuration. 2024-05-17T11:39:42,159 This leads to an ambiguous overall configuration. If you want to distribute this 2024-05-17T11:39:42,159 package, please make sure that 'multiqc.modules.ccs' is explicitly added 2024-05-17T11:39:42,160 to the `packages` configuration field. 2024-05-17T11:39:42,161 Alternatively, you can also rely on setuptools' discovery methods 2024-05-17T11:39:42,161 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-05-17T11:39:42,162 instead of `find_packages(...)`/`find:`). 2024-05-17T11:39:42,162 You can read more about "package discovery" on setuptools documentation page: 2024-05-17T11:39:42,163 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-05-17T11:39:42,164 If you don't want 'multiqc.modules.ccs' to be distributed and are 2024-05-17T11:39:42,165 already explicitly excluding 'multiqc.modules.ccs' via 2024-05-17T11:39:42,165 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-05-17T11:39:42,166 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-05-17T11:39:42,166 combination with a more fine grained `package-data` configuration. 2024-05-17T11:39:42,167 You can read more about "package data files" on setuptools documentation page: 2024-05-17T11:39:42,168 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-05-17T11:39:42,170 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-05-17T11:39:42,171 even if it does not contain any `.py` files. 2024-05-17T11:39:42,172 On the other hand, currently there is no concept of package data 2024-05-17T11:39:42,172 directory, all directories are treated like packages. 2024-05-17T11:39:42,173 ******************************************************************************** 2024-05-17T11:39:42,174 !! 2024-05-17T11:39:42,175 check.warn(importable) 2024-05-17T11:39:42,176 /tmp/pip-build-env-u8mgr1go/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'multiqc.modules.cellranger' is absent from the `packages` configuration. 2024-05-17T11:39:42,176 !! 2024-05-17T11:39:42,177 ******************************************************************************** 2024-05-17T11:39:42,178 ############################ 2024-05-17T11:39:42,179 # Package would be ignored # 2024-05-17T11:39:42,179 ############################ 2024-05-17T11:39:42,180 Python recognizes 'multiqc.modules.cellranger' as an importable package[^1], 2024-05-17T11:39:42,181 but it is absent from setuptools' `packages` configuration. 2024-05-17T11:39:42,182 This leads to an ambiguous overall configuration. If you want to distribute this 2024-05-17T11:39:42,182 package, please make sure that 'multiqc.modules.cellranger' is explicitly added 2024-05-17T11:39:42,183 to the `packages` configuration field. 2024-05-17T11:39:42,184 Alternatively, you can also rely on setuptools' discovery methods 2024-05-17T11:39:42,185 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-05-17T11:39:42,185 instead of `find_packages(...)`/`find:`). 2024-05-17T11:39:42,186 You can read more about "package discovery" on setuptools documentation page: 2024-05-17T11:39:42,188 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-05-17T11:39:42,189 If you don't want 'multiqc.modules.cellranger' to be distributed and are 2024-05-17T11:39:42,190 already explicitly excluding 'multiqc.modules.cellranger' via 2024-05-17T11:39:42,190 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-05-17T11:39:42,191 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-05-17T11:39:42,192 combination with a more fine grained `package-data` configuration. 2024-05-17T11:39:42,193 You can read more about "package data files" on setuptools documentation page: 2024-05-17T11:39:42,194 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-05-17T11:39:42,196 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-05-17T11:39:42,196 even if it does not contain any `.py` files. 2024-05-17T11:39:42,197 On the other hand, currently there is no concept of package data 2024-05-17T11:39:42,197 directory, all directories are treated like packages. 2024-05-17T11:39:42,198 ******************************************************************************** 2024-05-17T11:39:42,199 !! 2024-05-17T11:39:42,199 check.warn(importable) 2024-05-17T11:39:42,200 /tmp/pip-build-env-u8mgr1go/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'multiqc.modules.checkqc' is absent from the `packages` configuration. 2024-05-17T11:39:42,200 !! 2024-05-17T11:39:42,201 ******************************************************************************** 2024-05-17T11:39:42,202 ############################ 2024-05-17T11:39:42,202 # Package would be ignored # 2024-05-17T11:39:42,203 ############################ 2024-05-17T11:39:42,203 Python recognizes 'multiqc.modules.checkqc' as an importable package[^1], 2024-05-17T11:39:42,204 but it is absent from setuptools' `packages` configuration. 2024-05-17T11:39:42,205 This leads to an ambiguous overall configuration. If you want to distribute this 2024-05-17T11:39:42,206 package, please make sure that 'multiqc.modules.checkqc' is explicitly added 2024-05-17T11:39:42,206 to the `packages` configuration field. 2024-05-17T11:39:42,208 Alternatively, you can also rely on setuptools' discovery methods 2024-05-17T11:39:42,209 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-05-17T11:39:42,209 instead of `find_packages(...)`/`find:`). 2024-05-17T11:39:42,211 You can read more about "package discovery" on setuptools documentation page: 2024-05-17T11:39:42,212 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-05-17T11:39:42,214 If you don't want 'multiqc.modules.checkqc' to be distributed and are 2024-05-17T11:39:42,214 already explicitly excluding 'multiqc.modules.checkqc' via 2024-05-17T11:39:42,215 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-05-17T11:39:42,216 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-05-17T11:39:42,216 combination with a more fine grained `package-data` configuration. 2024-05-17T11:39:42,217 You can read more about "package data files" on setuptools documentation page: 2024-05-17T11:39:42,218 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-05-17T11:39:42,220 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-05-17T11:39:42,220 even if it does not contain any `.py` files. 2024-05-17T11:39:42,220 On the other hand, currently there is no concept of package data 2024-05-17T11:39:42,221 directory, all directories are treated like packages. 2024-05-17T11:39:42,221 ******************************************************************************** 2024-05-17T11:39:42,223 !! 2024-05-17T11:39:42,223 check.warn(importable) 2024-05-17T11:39:42,224 /tmp/pip-build-env-u8mgr1go/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'multiqc.modules.clipandmerge' is absent from the `packages` configuration. 2024-05-17T11:39:42,224 !! 2024-05-17T11:39:42,226 ******************************************************************************** 2024-05-17T11:39:42,226 ############################ 2024-05-17T11:39:42,226 # Package would be ignored # 2024-05-17T11:39:42,227 ############################ 2024-05-17T11:39:42,227 Python recognizes 'multiqc.modules.clipandmerge' as an importable package[^1], 2024-05-17T11:39:42,227 but it is absent from setuptools' `packages` configuration. 2024-05-17T11:39:42,228 This leads to an ambiguous overall configuration. If you want to distribute this 2024-05-17T11:39:42,228 package, please make sure that 'multiqc.modules.clipandmerge' is explicitly added 2024-05-17T11:39:42,229 to the `packages` configuration field. 2024-05-17T11:39:42,229 Alternatively, you can also rely on setuptools' discovery methods 2024-05-17T11:39:42,230 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-05-17T11:39:42,230 instead of `find_packages(...)`/`find:`). 2024-05-17T11:39:42,231 You can read more about "package discovery" on setuptools documentation page: 2024-05-17T11:39:42,232 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-05-17T11:39:42,232 If you don't want 'multiqc.modules.clipandmerge' to be distributed and are 2024-05-17T11:39:42,233 already explicitly excluding 'multiqc.modules.clipandmerge' via 2024-05-17T11:39:42,233 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-05-17T11:39:42,234 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-05-17T11:39:42,234 combination with a more fine grained `package-data` configuration. 2024-05-17T11:39:42,235 You can read more about "package data files" on setuptools documentation page: 2024-05-17T11:39:42,236 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-05-17T11:39:42,238 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-05-17T11:39:42,238 even if it does not contain any `.py` files. 2024-05-17T11:39:42,239 On the other hand, currently there is no concept of package data 2024-05-17T11:39:42,240 directory, all directories are treated like packages. 2024-05-17T11:39:42,240 ******************************************************************************** 2024-05-17T11:39:42,241 !! 2024-05-17T11:39:42,242 check.warn(importable) 2024-05-17T11:39:42,243 /tmp/pip-build-env-u8mgr1go/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'multiqc.modules.clusterflow' is absent from the `packages` configuration. 2024-05-17T11:39:42,243 !! 2024-05-17T11:39:42,244 ******************************************************************************** 2024-05-17T11:39:42,245 ############################ 2024-05-17T11:39:42,245 # Package would be ignored # 2024-05-17T11:39:42,246 ############################ 2024-05-17T11:39:42,246 Python recognizes 'multiqc.modules.clusterflow' as an importable package[^1], 2024-05-17T11:39:42,247 but it is absent from setuptools' `packages` configuration. 2024-05-17T11:39:42,248 This leads to an ambiguous overall configuration. If you want to distribute this 2024-05-17T11:39:42,248 package, please make sure that 'multiqc.modules.clusterflow' is explicitly added 2024-05-17T11:39:42,249 to the `packages` configuration field. 2024-05-17T11:39:42,250 Alternatively, you can also rely on setuptools' discovery methods 2024-05-17T11:39:42,250 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-05-17T11:39:42,251 instead of `find_packages(...)`/`find:`). 2024-05-17T11:39:42,252 You can read more about "package discovery" on setuptools documentation page: 2024-05-17T11:39:42,253 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-05-17T11:39:42,253 If you don't want 'multiqc.modules.clusterflow' to be distributed and are 2024-05-17T11:39:42,254 already explicitly excluding 'multiqc.modules.clusterflow' via 2024-05-17T11:39:42,254 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-05-17T11:39:42,254 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-05-17T11:39:42,255 combination with a more fine grained `package-data` configuration. 2024-05-17T11:39:42,256 You can read more about "package data files" on setuptools documentation page: 2024-05-17T11:39:42,256 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-05-17T11:39:42,257 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-05-17T11:39:42,258 even if it does not contain any `.py` files. 2024-05-17T11:39:42,258 On the other hand, currently there is no concept of package data 2024-05-17T11:39:42,258 directory, all directories are treated like packages. 2024-05-17T11:39:42,259 ******************************************************************************** 2024-05-17T11:39:42,259 !! 2024-05-17T11:39:42,260 check.warn(importable) 2024-05-17T11:39:42,260 /tmp/pip-build-env-u8mgr1go/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'multiqc.modules.conpair' is absent from the `packages` configuration. 2024-05-17T11:39:42,260 !! 2024-05-17T11:39:42,262 ******************************************************************************** 2024-05-17T11:39:42,262 ############################ 2024-05-17T11:39:42,263 # Package would be ignored # 2024-05-17T11:39:42,263 ############################ 2024-05-17T11:39:42,263 Python recognizes 'multiqc.modules.conpair' as an importable package[^1], 2024-05-17T11:39:42,264 but it is absent from setuptools' `packages` configuration. 2024-05-17T11:39:42,265 This leads to an ambiguous overall configuration. If you want to distribute this 2024-05-17T11:39:42,266 package, please make sure that 'multiqc.modules.conpair' is explicitly added 2024-05-17T11:39:42,266 to the `packages` configuration field. 2024-05-17T11:39:42,267 Alternatively, you can also rely on setuptools' discovery methods 2024-05-17T11:39:42,268 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-05-17T11:39:42,268 instead of `find_packages(...)`/`find:`). 2024-05-17T11:39:42,269 You can read more about "package discovery" on setuptools documentation page: 2024-05-17T11:39:42,270 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-05-17T11:39:42,271 If you don't want 'multiqc.modules.conpair' to be distributed and are 2024-05-17T11:39:42,272 already explicitly excluding 'multiqc.modules.conpair' via 2024-05-17T11:39:42,272 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-05-17T11:39:42,272 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-05-17T11:39:42,273 combination with a more fine grained `package-data` configuration. 2024-05-17T11:39:42,274 You can read more about "package data files" on setuptools documentation page: 2024-05-17T11:39:42,275 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-05-17T11:39:42,277 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-05-17T11:39:42,277 even if it does not contain any `.py` files. 2024-05-17T11:39:42,278 On the other hand, currently there is no concept of package data 2024-05-17T11:39:42,279 directory, all directories are treated like packages. 2024-05-17T11:39:42,279 ******************************************************************************** 2024-05-17T11:39:42,280 !! 2024-05-17T11:39:42,280 check.warn(importable) 2024-05-17T11:39:42,280 /tmp/pip-build-env-u8mgr1go/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'multiqc.modules.custom_content' is absent from the `packages` configuration. 2024-05-17T11:39:42,281 !! 2024-05-17T11:39:42,281 ******************************************************************************** 2024-05-17T11:39:42,282 ############################ 2024-05-17T11:39:42,282 # Package would be ignored # 2024-05-17T11:39:42,282 ############################ 2024-05-17T11:39:42,283 Python recognizes 'multiqc.modules.custom_content' as an importable package[^1], 2024-05-17T11:39:42,283 but it is absent from setuptools' `packages` configuration. 2024-05-17T11:39:42,284 This leads to an ambiguous overall configuration. If you want to distribute this 2024-05-17T11:39:42,285 package, please make sure that 'multiqc.modules.custom_content' is explicitly added 2024-05-17T11:39:42,285 to the `packages` configuration field. 2024-05-17T11:39:42,286 Alternatively, you can also rely on setuptools' discovery methods 2024-05-17T11:39:42,286 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-05-17T11:39:42,287 instead of `find_packages(...)`/`find:`). 2024-05-17T11:39:42,288 You can read more about "package discovery" on setuptools documentation page: 2024-05-17T11:39:42,289 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-05-17T11:39:42,290 If you don't want 'multiqc.modules.custom_content' to be distributed and are 2024-05-17T11:39:42,291 already explicitly excluding 'multiqc.modules.custom_content' via 2024-05-17T11:39:42,292 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-05-17T11:39:42,292 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-05-17T11:39:42,293 combination with a more fine grained `package-data` configuration. 2024-05-17T11:39:42,294 You can read more about "package data files" on setuptools documentation page: 2024-05-17T11:39:42,295 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-05-17T11:39:42,298 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-05-17T11:39:42,298 even if it does not contain any `.py` files. 2024-05-17T11:39:42,299 On the other hand, currently there is no concept of package data 2024-05-17T11:39:42,300 directory, all directories are treated like packages. 2024-05-17T11:39:42,300 ******************************************************************************** 2024-05-17T11:39:42,301 !! 2024-05-17T11:39:42,302 check.warn(importable) 2024-05-17T11:39:42,302 /tmp/pip-build-env-u8mgr1go/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'multiqc.modules.cutadapt' is absent from the `packages` configuration. 2024-05-17T11:39:42,303 !! 2024-05-17T11:39:42,304 ******************************************************************************** 2024-05-17T11:39:42,304 ############################ 2024-05-17T11:39:42,305 # Package would be ignored # 2024-05-17T11:39:42,305 ############################ 2024-05-17T11:39:42,306 Python recognizes 'multiqc.modules.cutadapt' as an importable package[^1], 2024-05-17T11:39:42,306 but it is absent from setuptools' `packages` configuration. 2024-05-17T11:39:42,308 This leads to an ambiguous overall configuration. If you want to distribute this 2024-05-17T11:39:42,308 package, please make sure that 'multiqc.modules.cutadapt' is explicitly added 2024-05-17T11:39:42,309 to the `packages` configuration field. 2024-05-17T11:39:42,310 Alternatively, you can also rely on setuptools' discovery methods 2024-05-17T11:39:42,310 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-05-17T11:39:42,310 instead of `find_packages(...)`/`find:`). 2024-05-17T11:39:42,311 You can read more about "package discovery" on setuptools documentation page: 2024-05-17T11:39:42,312 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-05-17T11:39:42,312 If you don't want 'multiqc.modules.cutadapt' to be distributed and are 2024-05-17T11:39:42,313 already explicitly excluding 'multiqc.modules.cutadapt' via 2024-05-17T11:39:42,313 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-05-17T11:39:42,313 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-05-17T11:39:42,314 combination with a more fine grained `package-data` configuration. 2024-05-17T11:39:42,314 You can read more about "package data files" on setuptools documentation page: 2024-05-17T11:39:42,315 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-05-17T11:39:42,316 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-05-17T11:39:42,317 even if it does not contain any `.py` files. 2024-05-17T11:39:42,317 On the other hand, currently there is no concept of package data 2024-05-17T11:39:42,317 directory, all directories are treated like packages. 2024-05-17T11:39:42,318 ******************************************************************************** 2024-05-17T11:39:42,319 !! 2024-05-17T11:39:42,320 check.warn(importable) 2024-05-17T11:39:42,320 /tmp/pip-build-env-u8mgr1go/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'multiqc.modules.damageprofiler' is absent from the `packages` configuration. 2024-05-17T11:39:42,321 !! 2024-05-17T11:39:42,322 ******************************************************************************** 2024-05-17T11:39:42,323 ############################ 2024-05-17T11:39:42,323 # Package would be ignored # 2024-05-17T11:39:42,324 ############################ 2024-05-17T11:39:42,325 Python recognizes 'multiqc.modules.damageprofiler' as an importable package[^1], 2024-05-17T11:39:42,325 but it is absent from setuptools' `packages` configuration. 2024-05-17T11:39:42,326 This leads to an ambiguous overall configuration. If you want to distribute this 2024-05-17T11:39:42,327 package, please make sure that 'multiqc.modules.damageprofiler' is explicitly added 2024-05-17T11:39:42,327 to the `packages` configuration field. 2024-05-17T11:39:42,328 Alternatively, you can also rely on setuptools' discovery methods 2024-05-17T11:39:42,329 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-05-17T11:39:42,329 instead of `find_packages(...)`/`find:`). 2024-05-17T11:39:42,330 You can read more about "package discovery" on setuptools documentation page: 2024-05-17T11:39:42,331 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-05-17T11:39:42,332 If you don't want 'multiqc.modules.damageprofiler' to be distributed and are 2024-05-17T11:39:42,333 already explicitly excluding 'multiqc.modules.damageprofiler' via 2024-05-17T11:39:42,333 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-05-17T11:39:42,334 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-05-17T11:39:42,334 combination with a more fine grained `package-data` configuration. 2024-05-17T11:39:42,336 You can read more about "package data files" on setuptools documentation page: 2024-05-17T11:39:42,336 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-05-17T11:39:42,337 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-05-17T11:39:42,338 even if it does not contain any `.py` files. 2024-05-17T11:39:42,338 On the other hand, currently there is no concept of package data 2024-05-17T11:39:42,338 directory, all directories are treated like packages. 2024-05-17T11:39:42,339 ******************************************************************************** 2024-05-17T11:39:42,339 !! 2024-05-17T11:39:42,340 check.warn(importable) 2024-05-17T11:39:42,340 /tmp/pip-build-env-u8mgr1go/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'multiqc.modules.dedup' is absent from the `packages` configuration. 2024-05-17T11:39:42,340 !! 2024-05-17T11:39:42,341 ******************************************************************************** 2024-05-17T11:39:42,341 ############################ 2024-05-17T11:39:42,342 # Package would be ignored # 2024-05-17T11:39:42,342 ############################ 2024-05-17T11:39:42,343 Python recognizes 'multiqc.modules.dedup' as an importable package[^1], 2024-05-17T11:39:42,343 but it is absent from setuptools' `packages` configuration. 2024-05-17T11:39:42,344 This leads to an ambiguous overall configuration. If you want to distribute this 2024-05-17T11:39:42,345 package, please make sure that 'multiqc.modules.dedup' is explicitly added 2024-05-17T11:39:42,345 to the `packages` configuration field. 2024-05-17T11:39:42,346 Alternatively, you can also rely on setuptools' discovery methods 2024-05-17T11:39:42,347 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-05-17T11:39:42,347 instead of `find_packages(...)`/`find:`). 2024-05-17T11:39:42,348 You can read more about "package discovery" on setuptools documentation page: 2024-05-17T11:39:42,349 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-05-17T11:39:42,350 If you don't want 'multiqc.modules.dedup' to be distributed and are 2024-05-17T11:39:42,351 already explicitly excluding 'multiqc.modules.dedup' via 2024-05-17T11:39:42,352 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-05-17T11:39:42,352 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-05-17T11:39:42,353 combination with a more fine grained `package-data` configuration. 2024-05-17T11:39:42,354 You can read more about "package data files" on setuptools documentation page: 2024-05-17T11:39:42,354 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-05-17T11:39:42,356 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-05-17T11:39:42,356 even if it does not contain any `.py` files. 2024-05-17T11:39:42,357 On the other hand, currently there is no concept of package data 2024-05-17T11:39:42,357 directory, all directories are treated like packages. 2024-05-17T11:39:42,358 ******************************************************************************** 2024-05-17T11:39:42,359 !! 2024-05-17T11:39:42,359 check.warn(importable) 2024-05-17T11:39:42,360 /tmp/pip-build-env-u8mgr1go/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'multiqc.modules.deeptools' is absent from the `packages` configuration. 2024-05-17T11:39:42,360 !! 2024-05-17T11:39:42,361 ******************************************************************************** 2024-05-17T11:39:42,362 ############################ 2024-05-17T11:39:42,363 # Package would be ignored # 2024-05-17T11:39:42,363 ############################ 2024-05-17T11:39:42,364 Python recognizes 'multiqc.modules.deeptools' as an importable package[^1], 2024-05-17T11:39:42,364 but it is absent from setuptools' `packages` configuration. 2024-05-17T11:39:42,365 This leads to an ambiguous overall configuration. If you want to distribute this 2024-05-17T11:39:42,365 package, please make sure that 'multiqc.modules.deeptools' is explicitly added 2024-05-17T11:39:42,365 to the `packages` configuration field. 2024-05-17T11:39:42,366 Alternatively, you can also rely on setuptools' discovery methods 2024-05-17T11:39:42,366 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-05-17T11:39:42,367 instead of `find_packages(...)`/`find:`). 2024-05-17T11:39:42,368 You can read more about "package discovery" on setuptools documentation page: 2024-05-17T11:39:42,368 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-05-17T11:39:42,369 If you don't want 'multiqc.modules.deeptools' to be distributed and are 2024-05-17T11:39:42,369 already explicitly excluding 'multiqc.modules.deeptools' via 2024-05-17T11:39:42,370 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-05-17T11:39:42,370 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-05-17T11:39:42,370 combination with a more fine grained `package-data` configuration. 2024-05-17T11:39:42,371 You can read more about "package data files" on setuptools documentation page: 2024-05-17T11:39:42,372 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-05-17T11:39:42,374 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-05-17T11:39:42,374 even if it does not contain any `.py` files. 2024-05-17T11:39:42,375 On the other hand, currently there is no concept of package data 2024-05-17T11:39:42,376 directory, all directories are treated like packages. 2024-05-17T11:39:42,376 ******************************************************************************** 2024-05-17T11:39:42,377 !! 2024-05-17T11:39:42,378 check.warn(importable) 2024-05-17T11:39:42,378 /tmp/pip-build-env-u8mgr1go/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'multiqc.modules.diamond' is absent from the `packages` configuration. 2024-05-17T11:39:42,379 !! 2024-05-17T11:39:42,380 ******************************************************************************** 2024-05-17T11:39:42,380 ############################ 2024-05-17T11:39:42,381 # Package would be ignored # 2024-05-17T11:39:42,381 ############################ 2024-05-17T11:39:42,382 Python recognizes 'multiqc.modules.diamond' as an importable package[^1], 2024-05-17T11:39:42,382 but it is absent from setuptools' `packages` configuration. 2024-05-17T11:39:42,383 This leads to an ambiguous overall configuration. If you want to distribute this 2024-05-17T11:39:42,384 package, please make sure that 'multiqc.modules.diamond' is explicitly added 2024-05-17T11:39:42,384 to the `packages` configuration field. 2024-05-17T11:39:42,385 Alternatively, you can also rely on setuptools' discovery methods 2024-05-17T11:39:42,385 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-05-17T11:39:42,386 instead of `find_packages(...)`/`find:`). 2024-05-17T11:39:42,387 You can read more about "package discovery" on setuptools documentation page: 2024-05-17T11:39:42,388 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-05-17T11:39:42,390 If you don't want 'multiqc.modules.diamond' to be distributed and are 2024-05-17T11:39:42,390 already explicitly excluding 'multiqc.modules.diamond' via 2024-05-17T11:39:42,390 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-05-17T11:39:42,390 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-05-17T11:39:42,391 combination with a more fine grained `package-data` configuration. 2024-05-17T11:39:42,392 You can read more about "package data files" on setuptools documentation page: 2024-05-17T11:39:42,392 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-05-17T11:39:42,393 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-05-17T11:39:42,394 even if it does not contain any `.py` files. 2024-05-17T11:39:42,394 On the other hand, currently there is no concept of package data 2024-05-17T11:39:42,394 directory, all directories are treated like packages. 2024-05-17T11:39:42,394 ******************************************************************************** 2024-05-17T11:39:42,395 !! 2024-05-17T11:39:42,396 check.warn(importable) 2024-05-17T11:39:42,396 /tmp/pip-build-env-u8mgr1go/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'multiqc.modules.disambiguate' is absent from the `packages` configuration. 2024-05-17T11:39:42,396 !! 2024-05-17T11:39:42,397 ******************************************************************************** 2024-05-17T11:39:42,398 ############################ 2024-05-17T11:39:42,398 # Package would be ignored # 2024-05-17T11:39:42,399 ############################ 2024-05-17T11:39:42,399 Python recognizes 'multiqc.modules.disambiguate' as an importable package[^1], 2024-05-17T11:39:42,400 but it is absent from setuptools' `packages` configuration. 2024-05-17T11:39:42,401 This leads to an ambiguous overall configuration. If you want to distribute this 2024-05-17T11:39:42,401 package, please make sure that 'multiqc.modules.disambiguate' is explicitly added 2024-05-17T11:39:42,402 to the `packages` configuration field. 2024-05-17T11:39:42,403 Alternatively, you can also rely on setuptools' discovery methods 2024-05-17T11:39:42,403 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-05-17T11:39:42,404 instead of `find_packages(...)`/`find:`). 2024-05-17T11:39:42,405 You can read more about "package discovery" on setuptools documentation page: 2024-05-17T11:39:42,406 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-05-17T11:39:42,407 If you don't want 'multiqc.modules.disambiguate' to be distributed and are 2024-05-17T11:39:42,408 already explicitly excluding 'multiqc.modules.disambiguate' via 2024-05-17T11:39:42,408 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-05-17T11:39:42,409 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-05-17T11:39:42,409 combination with a more fine grained `package-data` configuration. 2024-05-17T11:39:42,410 You can read more about "package data files" on setuptools documentation page: 2024-05-17T11:39:42,411 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-05-17T11:39:42,413 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-05-17T11:39:42,413 even if it does not contain any `.py` files. 2024-05-17T11:39:42,414 On the other hand, currently there is no concept of package data 2024-05-17T11:39:42,414 directory, all directories are treated like packages. 2024-05-17T11:39:42,415 ******************************************************************************** 2024-05-17T11:39:42,416 !! 2024-05-17T11:39:42,416 check.warn(importable) 2024-05-17T11:39:42,417 /tmp/pip-build-env-u8mgr1go/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'multiqc.modules.dragen' is absent from the `packages` configuration. 2024-05-17T11:39:42,417 !! 2024-05-17T11:39:42,418 ******************************************************************************** 2024-05-17T11:39:42,418 ############################ 2024-05-17T11:39:42,418 # Package would be ignored # 2024-05-17T11:39:42,419 ############################ 2024-05-17T11:39:42,419 Python recognizes 'multiqc.modules.dragen' as an importable package[^1], 2024-05-17T11:39:42,419 but it is absent from setuptools' `packages` configuration. 2024-05-17T11:39:42,420 This leads to an ambiguous overall configuration. If you want to distribute this 2024-05-17T11:39:42,420 package, please make sure that 'multiqc.modules.dragen' is explicitly added 2024-05-17T11:39:42,421 to the `packages` configuration field. 2024-05-17T11:39:42,422 Alternatively, you can also rely on setuptools' discovery methods 2024-05-17T11:39:42,422 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-05-17T11:39:42,422 instead of `find_packages(...)`/`find:`). 2024-05-17T11:39:42,423 You can read more about "package discovery" on setuptools documentation page: 2024-05-17T11:39:42,424 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-05-17T11:39:42,425 If you don't want 'multiqc.modules.dragen' to be distributed and are 2024-05-17T11:39:42,426 already explicitly excluding 'multiqc.modules.dragen' via 2024-05-17T11:39:42,426 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-05-17T11:39:42,427 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-05-17T11:39:42,427 combination with a more fine grained `package-data` configuration. 2024-05-17T11:39:42,428 You can read more about "package data files" on setuptools documentation page: 2024-05-17T11:39:42,429 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-05-17T11:39:42,431 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-05-17T11:39:42,431 even if it does not contain any `.py` files. 2024-05-17T11:39:42,432 On the other hand, currently there is no concept of package data 2024-05-17T11:39:42,432 directory, all directories are treated like packages. 2024-05-17T11:39:42,433 ******************************************************************************** 2024-05-17T11:39:42,434 !! 2024-05-17T11:39:42,434 check.warn(importable) 2024-05-17T11:39:42,435 /tmp/pip-build-env-u8mgr1go/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'multiqc.modules.dragen_fastqc' is absent from the `packages` configuration. 2024-05-17T11:39:42,436 !! 2024-05-17T11:39:42,437 ******************************************************************************** 2024-05-17T11:39:42,437 ############################ 2024-05-17T11:39:42,438 # Package would be ignored # 2024-05-17T11:39:42,438 ############################ 2024-05-17T11:39:42,439 Python recognizes 'multiqc.modules.dragen_fastqc' as an importable package[^1], 2024-05-17T11:39:42,439 but it is absent from setuptools' `packages` configuration. 2024-05-17T11:39:42,440 This leads to an ambiguous overall configuration. If you want to distribute this 2024-05-17T11:39:42,441 package, please make sure that 'multiqc.modules.dragen_fastqc' is explicitly added 2024-05-17T11:39:42,441 to the `packages` configuration field. 2024-05-17T11:39:42,443 Alternatively, you can also rely on setuptools' discovery methods 2024-05-17T11:39:42,443 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-05-17T11:39:42,443 instead of `find_packages(...)`/`find:`). 2024-05-17T11:39:42,444 You can read more about "package discovery" on setuptools documentation page: 2024-05-17T11:39:42,445 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-05-17T11:39:42,445 If you don't want 'multiqc.modules.dragen_fastqc' to be distributed and are 2024-05-17T11:39:42,446 already explicitly excluding 'multiqc.modules.dragen_fastqc' via 2024-05-17T11:39:42,446 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-05-17T11:39:42,447 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-05-17T11:39:42,447 combination with a more fine grained `package-data` configuration. 2024-05-17T11:39:42,448 You can read more about "package data files" on setuptools documentation page: 2024-05-17T11:39:42,448 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-05-17T11:39:42,450 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-05-17T11:39:42,450 even if it does not contain any `.py` files. 2024-05-17T11:39:42,450 On the other hand, currently there is no concept of package data 2024-05-17T11:39:42,451 directory, all directories are treated like packages. 2024-05-17T11:39:42,451 ******************************************************************************** 2024-05-17T11:39:42,452 !! 2024-05-17T11:39:42,452 check.warn(importable) 2024-05-17T11:39:42,453 /tmp/pip-build-env-u8mgr1go/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'multiqc.modules.dragen_fastqc.assets.js' is absent from the `packages` configuration. 2024-05-17T11:39:42,454 !! 2024-05-17T11:39:42,455 ******************************************************************************** 2024-05-17T11:39:42,455 ############################ 2024-05-17T11:39:42,456 # Package would be ignored # 2024-05-17T11:39:42,456 ############################ 2024-05-17T11:39:42,457 Python recognizes 'multiqc.modules.dragen_fastqc.assets.js' as an importable package[^1], 2024-05-17T11:39:42,457 but it is absent from setuptools' `packages` configuration. 2024-05-17T11:39:42,458 This leads to an ambiguous overall configuration. If you want to distribute this 2024-05-17T11:39:42,459 package, please make sure that 'multiqc.modules.dragen_fastqc.assets.js' is explicitly added 2024-05-17T11:39:42,459 to the `packages` configuration field. 2024-05-17T11:39:42,460 Alternatively, you can also rely on setuptools' discovery methods 2024-05-17T11:39:42,461 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-05-17T11:39:42,461 instead of `find_packages(...)`/`find:`). 2024-05-17T11:39:42,462 You can read more about "package discovery" on setuptools documentation page: 2024-05-17T11:39:42,463 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-05-17T11:39:42,464 If you don't want 'multiqc.modules.dragen_fastqc.assets.js' to be distributed and are 2024-05-17T11:39:42,465 already explicitly excluding 'multiqc.modules.dragen_fastqc.assets.js' via 2024-05-17T11:39:42,465 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-05-17T11:39:42,466 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-05-17T11:39:42,466 combination with a more fine grained `package-data` configuration. 2024-05-17T11:39:42,467 You can read more about "package data files" on setuptools documentation page: 2024-05-17T11:39:42,469 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-05-17T11:39:42,470 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-05-17T11:39:42,470 even if it does not contain any `.py` files. 2024-05-17T11:39:42,470 On the other hand, currently there is no concept of package data 2024-05-17T11:39:42,471 directory, all directories are treated like packages. 2024-05-17T11:39:42,471 ******************************************************************************** 2024-05-17T11:39:42,472 !! 2024-05-17T11:39:42,472 check.warn(importable) 2024-05-17T11:39:42,472 /tmp/pip-build-env-u8mgr1go/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'multiqc.modules.eigenstratdatabasetools' is absent from the `packages` configuration. 2024-05-17T11:39:42,473 !! 2024-05-17T11:39:42,473 ******************************************************************************** 2024-05-17T11:39:42,474 ############################ 2024-05-17T11:39:42,474 # Package would be ignored # 2024-05-17T11:39:42,475 ############################ 2024-05-17T11:39:42,475 Python recognizes 'multiqc.modules.eigenstratdatabasetools' as an importable package[^1], 2024-05-17T11:39:42,476 but it is absent from setuptools' `packages` configuration. 2024-05-17T11:39:42,476 This leads to an ambiguous overall configuration. If you want to distribute this 2024-05-17T11:39:42,477 package, please make sure that 'multiqc.modules.eigenstratdatabasetools' is explicitly added 2024-05-17T11:39:42,477 to the `packages` configuration field. 2024-05-17T11:39:42,479 Alternatively, you can also rely on setuptools' discovery methods 2024-05-17T11:39:42,479 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-05-17T11:39:42,480 instead of `find_packages(...)`/`find:`). 2024-05-17T11:39:42,481 You can read more about "package discovery" on setuptools documentation page: 2024-05-17T11:39:42,482 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-05-17T11:39:42,483 If you don't want 'multiqc.modules.eigenstratdatabasetools' to be distributed and are 2024-05-17T11:39:42,484 already explicitly excluding 'multiqc.modules.eigenstratdatabasetools' via 2024-05-17T11:39:42,484 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-05-17T11:39:42,485 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-05-17T11:39:42,485 combination with a more fine grained `package-data` configuration. 2024-05-17T11:39:42,486 You can read more about "package data files" on setuptools documentation page: 2024-05-17T11:39:42,488 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-05-17T11:39:42,489 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-05-17T11:39:42,489 even if it does not contain any `.py` files. 2024-05-17T11:39:42,490 On the other hand, currently there is no concept of package data 2024-05-17T11:39:42,490 directory, all directories are treated like packages. 2024-05-17T11:39:42,491 ******************************************************************************** 2024-05-17T11:39:42,492 !! 2024-05-17T11:39:42,492 check.warn(importable) 2024-05-17T11:39:42,493 /tmp/pip-build-env-u8mgr1go/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'multiqc.modules.fastp' is absent from the `packages` configuration. 2024-05-17T11:39:42,493 !! 2024-05-17T11:39:42,495 ******************************************************************************** 2024-05-17T11:39:42,495 ############################ 2024-05-17T11:39:42,496 # Package would be ignored # 2024-05-17T11:39:42,496 ############################ 2024-05-17T11:39:42,497 Python recognizes 'multiqc.modules.fastp' as an importable package[^1], 2024-05-17T11:39:42,497 but it is absent from setuptools' `packages` configuration. 2024-05-17T11:39:42,498 This leads to an ambiguous overall configuration. If you want to distribute this 2024-05-17T11:39:42,498 package, please make sure that 'multiqc.modules.fastp' is explicitly added 2024-05-17T11:39:42,498 to the `packages` configuration field. 2024-05-17T11:39:42,499 Alternatively, you can also rely on setuptools' discovery methods 2024-05-17T11:39:42,499 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-05-17T11:39:42,500 instead of `find_packages(...)`/`find:`). 2024-05-17T11:39:42,501 You can read more about "package discovery" on setuptools documentation page: 2024-05-17T11:39:42,501 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-05-17T11:39:42,502 If you don't want 'multiqc.modules.fastp' to be distributed and are 2024-05-17T11:39:42,502 already explicitly excluding 'multiqc.modules.fastp' via 2024-05-17T11:39:42,503 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-05-17T11:39:42,503 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-05-17T11:39:42,503 combination with a more fine grained `package-data` configuration. 2024-05-17T11:39:42,504 You can read more about "package data files" on setuptools documentation page: 2024-05-17T11:39:42,506 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-05-17T11:39:42,508 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-05-17T11:39:42,508 even if it does not contain any `.py` files. 2024-05-17T11:39:42,509 On the other hand, currently there is no concept of package data 2024-05-17T11:39:42,509 directory, all directories are treated like packages. 2024-05-17T11:39:42,510 ******************************************************************************** 2024-05-17T11:39:42,511 !! 2024-05-17T11:39:42,511 check.warn(importable) 2024-05-17T11:39:42,512 /tmp/pip-build-env-u8mgr1go/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'multiqc.modules.fastq_screen' is absent from the `packages` configuration. 2024-05-17T11:39:42,512 !! 2024-05-17T11:39:42,514 ******************************************************************************** 2024-05-17T11:39:42,514 ############################ 2024-05-17T11:39:42,515 # Package would be ignored # 2024-05-17T11:39:42,515 ############################ 2024-05-17T11:39:42,516 Python recognizes 'multiqc.modules.fastq_screen' as an importable package[^1], 2024-05-17T11:39:42,516 but it is absent from setuptools' `packages` configuration. 2024-05-17T11:39:42,517 This leads to an ambiguous overall configuration. If you want to distribute this 2024-05-17T11:39:42,517 package, please make sure that 'multiqc.modules.fastq_screen' is explicitly added 2024-05-17T11:39:42,518 to the `packages` configuration field. 2024-05-17T11:39:42,519 Alternatively, you can also rely on setuptools' discovery methods 2024-05-17T11:39:42,520 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-05-17T11:39:42,520 instead of `find_packages(...)`/`find:`). 2024-05-17T11:39:42,521 You can read more about "package discovery" on setuptools documentation page: 2024-05-17T11:39:42,522 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-05-17T11:39:42,523 If you don't want 'multiqc.modules.fastq_screen' to be distributed and are 2024-05-17T11:39:42,524 already explicitly excluding 'multiqc.modules.fastq_screen' via 2024-05-17T11:39:42,525 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-05-17T11:39:42,525 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-05-17T11:39:42,525 combination with a more fine grained `package-data` configuration. 2024-05-17T11:39:42,526 You can read more about "package data files" on setuptools documentation page: 2024-05-17T11:39:42,527 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-05-17T11:39:42,527 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-05-17T11:39:42,528 even if it does not contain any `.py` files. 2024-05-17T11:39:42,528 On the other hand, currently there is no concept of package data 2024-05-17T11:39:42,528 directory, all directories are treated like packages. 2024-05-17T11:39:42,529 ******************************************************************************** 2024-05-17T11:39:42,529 !! 2024-05-17T11:39:42,530 check.warn(importable) 2024-05-17T11:39:42,530 /tmp/pip-build-env-u8mgr1go/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'multiqc.modules.fastqc' is absent from the `packages` configuration. 2024-05-17T11:39:42,531 !! 2024-05-17T11:39:42,531 ******************************************************************************** 2024-05-17T11:39:42,532 ############################ 2024-05-17T11:39:42,532 # Package would be ignored # 2024-05-17T11:39:42,533 ############################ 2024-05-17T11:39:42,533 Python recognizes 'multiqc.modules.fastqc' as an importable package[^1], 2024-05-17T11:39:42,534 but it is absent from setuptools' `packages` configuration. 2024-05-17T11:39:42,535 This leads to an ambiguous overall configuration. If you want to distribute this 2024-05-17T11:39:42,536 package, please make sure that 'multiqc.modules.fastqc' is explicitly added 2024-05-17T11:39:42,536 to the `packages` configuration field. 2024-05-17T11:39:42,537 Alternatively, you can also rely on setuptools' discovery methods 2024-05-17T11:39:42,538 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-05-17T11:39:42,538 instead of `find_packages(...)`/`find:`). 2024-05-17T11:39:42,540 You can read more about "package discovery" on setuptools documentation page: 2024-05-17T11:39:42,541 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-05-17T11:39:42,542 If you don't want 'multiqc.modules.fastqc' to be distributed and are 2024-05-17T11:39:42,542 already explicitly excluding 'multiqc.modules.fastqc' via 2024-05-17T11:39:42,543 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-05-17T11:39:42,543 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-05-17T11:39:42,544 combination with a more fine grained `package-data` configuration. 2024-05-17T11:39:42,545 You can read more about "package data files" on setuptools documentation page: 2024-05-17T11:39:42,545 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-05-17T11:39:42,547 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-05-17T11:39:42,548 even if it does not contain any `.py` files. 2024-05-17T11:39:42,548 On the other hand, currently there is no concept of package data 2024-05-17T11:39:42,549 directory, all directories are treated like packages. 2024-05-17T11:39:42,549 ******************************************************************************** 2024-05-17T11:39:42,551 !! 2024-05-17T11:39:42,551 check.warn(importable) 2024-05-17T11:39:42,552 /tmp/pip-build-env-u8mgr1go/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'multiqc.modules.fastqc.assets.css' is absent from the `packages` configuration. 2024-05-17T11:39:42,552 !! 2024-05-17T11:39:42,553 ******************************************************************************** 2024-05-17T11:39:42,553 ############################ 2024-05-17T11:39:42,553 # Package would be ignored # 2024-05-17T11:39:42,554 ############################ 2024-05-17T11:39:42,554 Python recognizes 'multiqc.modules.fastqc.assets.css' as an importable package[^1], 2024-05-17T11:39:42,555 but it is absent from setuptools' `packages` configuration. 2024-05-17T11:39:42,556 This leads to an ambiguous overall configuration. If you want to distribute this 2024-05-17T11:39:42,556 package, please make sure that 'multiqc.modules.fastqc.assets.css' is explicitly added 2024-05-17T11:39:42,557 to the `packages` configuration field. 2024-05-17T11:39:42,559 Alternatively, you can also rely on setuptools' discovery methods 2024-05-17T11:39:42,559 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-05-17T11:39:42,560 instead of `find_packages(...)`/`find:`). 2024-05-17T11:39:42,560 You can read more about "package discovery" on setuptools documentation page: 2024-05-17T11:39:42,561 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-05-17T11:39:42,563 If you don't want 'multiqc.modules.fastqc.assets.css' to be distributed and are 2024-05-17T11:39:42,563 already explicitly excluding 'multiqc.modules.fastqc.assets.css' via 2024-05-17T11:39:42,564 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-05-17T11:39:42,564 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-05-17T11:39:42,565 combination with a more fine grained `package-data` configuration. 2024-05-17T11:39:42,567 You can read more about "package data files" on setuptools documentation page: 2024-05-17T11:39:42,569 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-05-17T11:39:42,572 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-05-17T11:39:42,573 even if it does not contain any `.py` files. 2024-05-17T11:39:42,573 On the other hand, currently there is no concept of package data 2024-05-17T11:39:42,574 directory, all directories are treated like packages. 2024-05-17T11:39:42,575 ******************************************************************************** 2024-05-17T11:39:42,577 !! 2024-05-17T11:39:42,796 check.warn(importable) 2024-05-17T11:39:42,796 /tmp/pip-build-env-u8mgr1go/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'multiqc.modules.fastqc.assets.js' is absent from the `packages` configuration. 2024-05-17T11:39:42,796 !! 2024-05-17T11:39:42,797 ******************************************************************************** 2024-05-17T11:39:42,798 ############################ 2024-05-17T11:39:42,798 # Package would be ignored # 2024-05-17T11:39:42,799 ############################ 2024-05-17T11:39:42,800 Python recognizes 'multiqc.modules.fastqc.assets.js' as an importable package[^1], 2024-05-17T11:39:42,800 but it is absent from setuptools' `packages` configuration. 2024-05-17T11:39:42,801 This leads to an ambiguous overall configuration. If you want to distribute this 2024-05-17T11:39:42,802 package, please make sure that 'multiqc.modules.fastqc.assets.js' is explicitly added 2024-05-17T11:39:42,803 to the `packages` configuration field. 2024-05-17T11:39:42,804 Alternatively, you can also rely on setuptools' discovery methods 2024-05-17T11:39:42,805 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-05-17T11:39:42,805 instead of `find_packages(...)`/`find:`). 2024-05-17T11:39:42,805 You can read more about "package discovery" on setuptools documentation page: 2024-05-17T11:39:42,806 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-05-17T11:39:42,807 If you don't want 'multiqc.modules.fastqc.assets.js' to be distributed and are 2024-05-17T11:39:42,807 already explicitly excluding 'multiqc.modules.fastqc.assets.js' via 2024-05-17T11:39:42,808 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-05-17T11:39:42,808 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-05-17T11:39:42,808 combination with a more fine grained `package-data` configuration. 2024-05-17T11:39:42,809 You can read more about "package data files" on setuptools documentation page: 2024-05-17T11:39:42,810 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-05-17T11:39:42,811 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-05-17T11:39:42,811 even if it does not contain any `.py` files. 2024-05-17T11:39:42,812 On the other hand, currently there is no concept of package data 2024-05-17T11:39:42,812 directory, all directories are treated like packages. 2024-05-17T11:39:42,813 ******************************************************************************** 2024-05-17T11:39:42,814 !! 2024-05-17T11:39:42,814 check.warn(importable) 2024-05-17T11:39:42,815 /tmp/pip-build-env-u8mgr1go/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'multiqc.modules.fastqc.fastqc_theoretical_gc' is absent from the `packages` configuration. 2024-05-17T11:39:42,815 !! 2024-05-17T11:39:42,816 ******************************************************************************** 2024-05-17T11:39:42,817 ############################ 2024-05-17T11:39:42,817 # Package would be ignored # 2024-05-17T11:39:42,818 ############################ 2024-05-17T11:39:42,818 Python recognizes 'multiqc.modules.fastqc.fastqc_theoretical_gc' as an importable package[^1], 2024-05-17T11:39:42,819 but it is absent from setuptools' `packages` configuration. 2024-05-17T11:39:42,820 This leads to an ambiguous overall configuration. If you want to distribute this 2024-05-17T11:39:42,820 package, please make sure that 'multiqc.modules.fastqc.fastqc_theoretical_gc' is explicitly added 2024-05-17T11:39:42,821 to the `packages` configuration field. 2024-05-17T11:39:42,822 Alternatively, you can also rely on setuptools' discovery methods 2024-05-17T11:39:42,822 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-05-17T11:39:42,823 instead of `find_packages(...)`/`find:`). 2024-05-17T11:39:42,824 You can read more about "package discovery" on setuptools documentation page: 2024-05-17T11:39:42,825 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-05-17T11:39:42,826 If you don't want 'multiqc.modules.fastqc.fastqc_theoretical_gc' to be distributed and are 2024-05-17T11:39:42,827 already explicitly excluding 'multiqc.modules.fastqc.fastqc_theoretical_gc' via 2024-05-17T11:39:42,827 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-05-17T11:39:42,828 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-05-17T11:39:42,828 combination with a more fine grained `package-data` configuration. 2024-05-17T11:39:42,829 You can read more about "package data files" on setuptools documentation page: 2024-05-17T11:39:42,831 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-05-17T11:39:42,832 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-05-17T11:39:42,832 even if it does not contain any `.py` files. 2024-05-17T11:39:42,833 On the other hand, currently there is no concept of package data 2024-05-17T11:39:42,833 directory, all directories are treated like packages. 2024-05-17T11:39:42,833 ******************************************************************************** 2024-05-17T11:39:42,834 !! 2024-05-17T11:39:42,834 check.warn(importable) 2024-05-17T11:39:42,834 /tmp/pip-build-env-u8mgr1go/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'multiqc.modules.featureCounts' is absent from the `packages` configuration. 2024-05-17T11:39:42,835 !! 2024-05-17T11:39:42,836 ******************************************************************************** 2024-05-17T11:39:42,836 ############################ 2024-05-17T11:39:42,836 # Package would be ignored # 2024-05-17T11:39:42,837 ############################ 2024-05-17T11:39:42,837 Python recognizes 'multiqc.modules.featureCounts' as an importable package[^1], 2024-05-17T11:39:42,837 but it is absent from setuptools' `packages` configuration. 2024-05-17T11:39:42,838 This leads to an ambiguous overall configuration. If you want to distribute this 2024-05-17T11:39:42,838 package, please make sure that 'multiqc.modules.featureCounts' is explicitly added 2024-05-17T11:39:42,839 to the `packages` configuration field. 2024-05-17T11:39:42,840 Alternatively, you can also rely on setuptools' discovery methods 2024-05-17T11:39:42,840 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-05-17T11:39:42,841 instead of `find_packages(...)`/`find:`). 2024-05-17T11:39:42,842 You can read more about "package discovery" on setuptools documentation page: 2024-05-17T11:39:42,843 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-05-17T11:39:42,844 If you don't want 'multiqc.modules.featureCounts' to be distributed and are 2024-05-17T11:39:42,844 already explicitly excluding 'multiqc.modules.featureCounts' via 2024-05-17T11:39:42,845 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-05-17T11:39:42,846 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-05-17T11:39:42,846 combination with a more fine grained `package-data` configuration. 2024-05-17T11:39:42,847 You can read more about "package data files" on setuptools documentation page: 2024-05-17T11:39:42,848 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-05-17T11:39:42,850 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-05-17T11:39:42,850 even if it does not contain any `.py` files. 2024-05-17T11:39:42,851 On the other hand, currently there is no concept of package data 2024-05-17T11:39:42,851 directory, all directories are treated like packages. 2024-05-17T11:39:42,852 ******************************************************************************** 2024-05-17T11:39:42,853 !! 2024-05-17T11:39:42,853 check.warn(importable) 2024-05-17T11:39:42,854 /tmp/pip-build-env-u8mgr1go/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'multiqc.modules.fgbio' is absent from the `packages` configuration. 2024-05-17T11:39:42,854 !! 2024-05-17T11:39:42,855 ******************************************************************************** 2024-05-17T11:39:42,856 ############################ 2024-05-17T11:39:42,856 # Package would be ignored # 2024-05-17T11:39:42,857 ############################ 2024-05-17T11:39:42,858 Python recognizes 'multiqc.modules.fgbio' as an importable package[^1], 2024-05-17T11:39:42,858 but it is absent from setuptools' `packages` configuration. 2024-05-17T11:39:42,859 This leads to an ambiguous overall configuration. If you want to distribute this 2024-05-17T11:39:42,859 package, please make sure that 'multiqc.modules.fgbio' is explicitly added 2024-05-17T11:39:42,859 to the `packages` configuration field. 2024-05-17T11:39:42,860 Alternatively, you can also rely on setuptools' discovery methods 2024-05-17T11:39:42,860 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-05-17T11:39:42,861 instead of `find_packages(...)`/`find:`). 2024-05-17T11:39:42,861 You can read more about "package discovery" on setuptools documentation page: 2024-05-17T11:39:42,862 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-05-17T11:39:42,863 If you don't want 'multiqc.modules.fgbio' to be distributed and are 2024-05-17T11:39:42,863 already explicitly excluding 'multiqc.modules.fgbio' via 2024-05-17T11:39:42,864 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-05-17T11:39:42,864 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-05-17T11:39:42,864 combination with a more fine grained `package-data` configuration. 2024-05-17T11:39:42,865 You can read more about "package data files" on setuptools documentation page: 2024-05-17T11:39:42,866 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-05-17T11:39:42,868 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-05-17T11:39:42,869 even if it does not contain any `.py` files. 2024-05-17T11:39:42,869 On the other hand, currently there is no concept of package data 2024-05-17T11:39:42,870 directory, all directories are treated like packages. 2024-05-17T11:39:42,870 ******************************************************************************** 2024-05-17T11:39:42,872 !! 2024-05-17T11:39:42,872 check.warn(importable) 2024-05-17T11:39:42,873 /tmp/pip-build-env-u8mgr1go/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'multiqc.modules.filtlong' is absent from the `packages` configuration. 2024-05-17T11:39:42,873 !! 2024-05-17T11:39:42,874 ******************************************************************************** 2024-05-17T11:39:42,875 ############################ 2024-05-17T11:39:42,875 # Package would be ignored # 2024-05-17T11:39:42,876 ############################ 2024-05-17T11:39:42,876 Python recognizes 'multiqc.modules.filtlong' as an importable package[^1], 2024-05-17T11:39:42,877 but it is absent from setuptools' `packages` configuration. 2024-05-17T11:39:42,878 This leads to an ambiguous overall configuration. If you want to distribute this 2024-05-17T11:39:42,878 package, please make sure that 'multiqc.modules.filtlong' is explicitly added 2024-05-17T11:39:42,879 to the `packages` configuration field. 2024-05-17T11:39:42,880 Alternatively, you can also rely on setuptools' discovery methods 2024-05-17T11:39:42,880 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-05-17T11:39:42,881 instead of `find_packages(...)`/`find:`). 2024-05-17T11:39:42,882 You can read more about "package discovery" on setuptools documentation page: 2024-05-17T11:39:42,883 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-05-17T11:39:42,884 If you don't want 'multiqc.modules.filtlong' to be distributed and are 2024-05-17T11:39:42,885 already explicitly excluding 'multiqc.modules.filtlong' via 2024-05-17T11:39:42,886 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-05-17T11:39:42,886 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-05-17T11:39:42,887 combination with a more fine grained `package-data` configuration. 2024-05-17T11:39:42,887 You can read more about "package data files" on setuptools documentation page: 2024-05-17T11:39:42,888 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-05-17T11:39:42,889 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-05-17T11:39:42,889 even if it does not contain any `.py` files. 2024-05-17T11:39:42,890 On the other hand, currently there is no concept of package data 2024-05-17T11:39:42,890 directory, all directories are treated like packages. 2024-05-17T11:39:42,891 ******************************************************************************** 2024-05-17T11:39:42,891 !! 2024-05-17T11:39:42,892 check.warn(importable) 2024-05-17T11:39:42,892 /tmp/pip-build-env-u8mgr1go/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'multiqc.modules.flash' is absent from the `packages` configuration. 2024-05-17T11:39:42,893 !! 2024-05-17T11:39:42,893 ******************************************************************************** 2024-05-17T11:39:42,894 ############################ 2024-05-17T11:39:42,894 # Package would be ignored # 2024-05-17T11:39:42,894 ############################ 2024-05-17T11:39:42,895 Python recognizes 'multiqc.modules.flash' as an importable package[^1], 2024-05-17T11:39:42,896 but it is absent from setuptools' `packages` configuration. 2024-05-17T11:39:42,897 This leads to an ambiguous overall configuration. If you want to distribute this 2024-05-17T11:39:42,897 package, please make sure that 'multiqc.modules.flash' is explicitly added 2024-05-17T11:39:42,898 to the `packages` configuration field. 2024-05-17T11:39:42,899 Alternatively, you can also rely on setuptools' discovery methods 2024-05-17T11:39:42,900 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-05-17T11:39:42,900 instead of `find_packages(...)`/`find:`). 2024-05-17T11:39:42,901 You can read more about "package discovery" on setuptools documentation page: 2024-05-17T11:39:42,902 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-05-17T11:39:42,904 If you don't want 'multiqc.modules.flash' to be distributed and are 2024-05-17T11:39:42,904 already explicitly excluding 'multiqc.modules.flash' via 2024-05-17T11:39:42,905 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-05-17T11:39:42,905 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-05-17T11:39:42,906 combination with a more fine grained `package-data` configuration. 2024-05-17T11:39:42,907 You can read more about "package data files" on setuptools documentation page: 2024-05-17T11:39:42,908 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-05-17T11:39:42,909 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-05-17T11:39:42,910 even if it does not contain any `.py` files. 2024-05-17T11:39:42,910 On the other hand, currently there is no concept of package data 2024-05-17T11:39:42,911 directory, all directories are treated like packages. 2024-05-17T11:39:42,911 ******************************************************************************** 2024-05-17T11:39:42,912 !! 2024-05-17T11:39:42,913 check.warn(importable) 2024-05-17T11:39:42,914 /tmp/pip-build-env-u8mgr1go/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'multiqc.modules.flexbar' is absent from the `packages` configuration. 2024-05-17T11:39:42,914 !! 2024-05-17T11:39:42,916 ******************************************************************************** 2024-05-17T11:39:42,916 ############################ 2024-05-17T11:39:42,916 # Package would be ignored # 2024-05-17T11:39:42,917 ############################ 2024-05-17T11:39:42,917 Python recognizes 'multiqc.modules.flexbar' as an importable package[^1], 2024-05-17T11:39:42,917 but it is absent from setuptools' `packages` configuration. 2024-05-17T11:39:42,918 This leads to an ambiguous overall configuration. If you want to distribute this 2024-05-17T11:39:42,918 package, please make sure that 'multiqc.modules.flexbar' is explicitly added 2024-05-17T11:39:42,919 to the `packages` configuration field. 2024-05-17T11:39:42,920 Alternatively, you can also rely on setuptools' discovery methods 2024-05-17T11:39:42,920 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-05-17T11:39:42,920 instead of `find_packages(...)`/`find:`). 2024-05-17T11:39:42,921 You can read more about "package discovery" on setuptools documentation page: 2024-05-17T11:39:42,922 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-05-17T11:39:42,923 If you don't want 'multiqc.modules.flexbar' to be distributed and are 2024-05-17T11:39:42,924 already explicitly excluding 'multiqc.modules.flexbar' via 2024-05-17T11:39:42,924 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-05-17T11:39:42,925 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-05-17T11:39:42,926 combination with a more fine grained `package-data` configuration. 2024-05-17T11:39:42,927 You can read more about "package data files" on setuptools documentation page: 2024-05-17T11:39:42,929 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-05-17T11:39:42,931 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-05-17T11:39:42,931 even if it does not contain any `.py` files. 2024-05-17T11:39:42,932 On the other hand, currently there is no concept of package data 2024-05-17T11:39:42,933 directory, all directories are treated like packages. 2024-05-17T11:39:42,933 ******************************************************************************** 2024-05-17T11:39:42,935 !! 2024-05-17T11:39:42,935 check.warn(importable) 2024-05-17T11:39:42,936 /tmp/pip-build-env-u8mgr1go/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'multiqc.modules.freyja' is absent from the `packages` configuration. 2024-05-17T11:39:42,937 !! 2024-05-17T11:39:42,938 ******************************************************************************** 2024-05-17T11:39:42,939 ############################ 2024-05-17T11:39:42,939 # Package would be ignored # 2024-05-17T11:39:42,940 ############################ 2024-05-17T11:39:42,940 Python recognizes 'multiqc.modules.freyja' as an importable package[^1], 2024-05-17T11:39:42,941 but it is absent from setuptools' `packages` configuration. 2024-05-17T11:39:42,942 This leads to an ambiguous overall configuration. If you want to distribute this 2024-05-17T11:39:42,943 package, please make sure that 'multiqc.modules.freyja' is explicitly added 2024-05-17T11:39:42,944 to the `packages` configuration field. 2024-05-17T11:39:42,945 Alternatively, you can also rely on setuptools' discovery methods 2024-05-17T11:39:42,946 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-05-17T11:39:42,947 instead of `find_packages(...)`/`find:`). 2024-05-17T11:39:42,949 You can read more about "package discovery" on setuptools documentation page: 2024-05-17T11:39:42,950 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-05-17T11:39:42,951 If you don't want 'multiqc.modules.freyja' to be distributed and are 2024-05-17T11:39:42,951 already explicitly excluding 'multiqc.modules.freyja' via 2024-05-17T11:39:42,952 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-05-17T11:39:42,952 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-05-17T11:39:42,953 combination with a more fine grained `package-data` configuration. 2024-05-17T11:39:42,954 You can read more about "package data files" on setuptools documentation page: 2024-05-17T11:39:42,955 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-05-17T11:39:42,956 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-05-17T11:39:42,957 even if it does not contain any `.py` files. 2024-05-17T11:39:42,957 On the other hand, currently there is no concept of package data 2024-05-17T11:39:42,958 directory, all directories are treated like packages. 2024-05-17T11:39:42,958 ******************************************************************************** 2024-05-17T11:39:42,960 !! 2024-05-17T11:39:42,960 check.warn(importable) 2024-05-17T11:39:42,961 /tmp/pip-build-env-u8mgr1go/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'multiqc.modules.gatk' is absent from the `packages` configuration. 2024-05-17T11:39:42,962 !! 2024-05-17T11:39:42,964 ******************************************************************************** 2024-05-17T11:39:42,964 ############################ 2024-05-17T11:39:42,965 # Package would be ignored # 2024-05-17T11:39:42,966 ############################ 2024-05-17T11:39:42,967 Python recognizes 'multiqc.modules.gatk' as an importable package[^1], 2024-05-17T11:39:42,968 but it is absent from setuptools' `packages` configuration. 2024-05-17T11:39:42,970 This leads to an ambiguous overall configuration. If you want to distribute this 2024-05-17T11:39:42,970 package, please make sure that 'multiqc.modules.gatk' is explicitly added 2024-05-17T11:39:42,971 to the `packages` configuration field. 2024-05-17T11:39:42,973 Alternatively, you can also rely on setuptools' discovery methods 2024-05-17T11:39:42,973 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-05-17T11:39:42,974 instead of `find_packages(...)`/`find:`). 2024-05-17T11:39:42,976 You can read more about "package discovery" on setuptools documentation page: 2024-05-17T11:39:42,977 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-05-17T11:39:42,979 If you don't want 'multiqc.modules.gatk' to be distributed and are 2024-05-17T11:39:42,979 already explicitly excluding 'multiqc.modules.gatk' via 2024-05-17T11:39:42,980 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-05-17T11:39:42,980 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-05-17T11:39:42,981 combination with a more fine grained `package-data` configuration. 2024-05-17T11:39:42,982 You can read more about "package data files" on setuptools documentation page: 2024-05-17T11:39:42,984 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-05-17T11:39:42,986 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-05-17T11:39:42,987 even if it does not contain any `.py` files. 2024-05-17T11:39:42,988 On the other hand, currently there is no concept of package data 2024-05-17T11:39:42,989 directory, all directories are treated like packages. 2024-05-17T11:39:42,989 ******************************************************************************** 2024-05-17T11:39:42,990 !! 2024-05-17T11:39:42,991 check.warn(importable) 2024-05-17T11:39:42,991 /tmp/pip-build-env-u8mgr1go/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'multiqc.modules.gffcompare' is absent from the `packages` configuration. 2024-05-17T11:39:42,992 !! 2024-05-17T11:39:42,993 ******************************************************************************** 2024-05-17T11:39:42,993 ############################ 2024-05-17T11:39:42,994 # Package would be ignored # 2024-05-17T11:39:42,994 ############################ 2024-05-17T11:39:42,995 Python recognizes 'multiqc.modules.gffcompare' as an importable package[^1], 2024-05-17T11:39:42,995 but it is absent from setuptools' `packages` configuration. 2024-05-17T11:39:42,996 This leads to an ambiguous overall configuration. If you want to distribute this 2024-05-17T11:39:42,997 package, please make sure that 'multiqc.modules.gffcompare' is explicitly added 2024-05-17T11:39:42,997 to the `packages` configuration field. 2024-05-17T11:39:42,998 Alternatively, you can also rely on setuptools' discovery methods 2024-05-17T11:39:42,999 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-05-17T11:39:43,000 instead of `find_packages(...)`/`find:`). 2024-05-17T11:39:43,001 You can read more about "package discovery" on setuptools documentation page: 2024-05-17T11:39:43,002 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-05-17T11:39:43,003 If you don't want 'multiqc.modules.gffcompare' to be distributed and are 2024-05-17T11:39:43,004 already explicitly excluding 'multiqc.modules.gffcompare' via 2024-05-17T11:39:43,004 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-05-17T11:39:43,005 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-05-17T11:39:43,005 combination with a more fine grained `package-data` configuration. 2024-05-17T11:39:43,007 You can read more about "package data files" on setuptools documentation page: 2024-05-17T11:39:43,008 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-05-17T11:39:43,010 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-05-17T11:39:43,010 even if it does not contain any `.py` files. 2024-05-17T11:39:43,011 On the other hand, currently there is no concept of package data 2024-05-17T11:39:43,011 directory, all directories are treated like packages. 2024-05-17T11:39:43,012 ******************************************************************************** 2024-05-17T11:39:43,013 !! 2024-05-17T11:39:43,014 check.warn(importable) 2024-05-17T11:39:43,014 /tmp/pip-build-env-u8mgr1go/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'multiqc.modules.goleft_indexcov' is absent from the `packages` configuration. 2024-05-17T11:39:43,015 !! 2024-05-17T11:39:43,017 ******************************************************************************** 2024-05-17T11:39:43,017 ############################ 2024-05-17T11:39:43,018 # Package would be ignored # 2024-05-17T11:39:43,019 ############################ 2024-05-17T11:39:43,020 Python recognizes 'multiqc.modules.goleft_indexcov' as an importable package[^1], 2024-05-17T11:39:43,021 but it is absent from setuptools' `packages` configuration. 2024-05-17T11:39:43,023 This leads to an ambiguous overall configuration. If you want to distribute this 2024-05-17T11:39:43,024 package, please make sure that 'multiqc.modules.goleft_indexcov' is explicitly added 2024-05-17T11:39:43,024 to the `packages` configuration field. 2024-05-17T11:39:43,025 Alternatively, you can also rely on setuptools' discovery methods 2024-05-17T11:39:43,026 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-05-17T11:39:43,026 instead of `find_packages(...)`/`find:`). 2024-05-17T11:39:43,027 You can read more about "package discovery" on setuptools documentation page: 2024-05-17T11:39:43,028 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-05-17T11:39:43,029 If you don't want 'multiqc.modules.goleft_indexcov' to be distributed and are 2024-05-17T11:39:43,029 already explicitly excluding 'multiqc.modules.goleft_indexcov' via 2024-05-17T11:39:43,029 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-05-17T11:39:43,030 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-05-17T11:39:43,030 combination with a more fine grained `package-data` configuration. 2024-05-17T11:39:43,031 You can read more about "package data files" on setuptools documentation page: 2024-05-17T11:39:43,032 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-05-17T11:39:43,033 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-05-17T11:39:43,033 even if it does not contain any `.py` files. 2024-05-17T11:39:43,034 On the other hand, currently there is no concept of package data 2024-05-17T11:39:43,034 directory, all directories are treated like packages. 2024-05-17T11:39:43,035 ******************************************************************************** 2024-05-17T11:39:43,037 !! 2024-05-17T11:39:43,038 check.warn(importable) 2024-05-17T11:39:43,038 /tmp/pip-build-env-u8mgr1go/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'multiqc.modules.gopeaks' is absent from the `packages` configuration. 2024-05-17T11:39:43,039 !! 2024-05-17T11:39:43,040 ******************************************************************************** 2024-05-17T11:39:43,041 ############################ 2024-05-17T11:39:43,041 # Package would be ignored # 2024-05-17T11:39:43,042 ############################ 2024-05-17T11:39:43,043 Python recognizes 'multiqc.modules.gopeaks' as an importable package[^1], 2024-05-17T11:39:43,043 but it is absent from setuptools' `packages` configuration. 2024-05-17T11:39:43,044 This leads to an ambiguous overall configuration. If you want to distribute this 2024-05-17T11:39:43,044 package, please make sure that 'multiqc.modules.gopeaks' is explicitly added 2024-05-17T11:39:43,045 to the `packages` configuration field. 2024-05-17T11:39:43,046 Alternatively, you can also rely on setuptools' discovery methods 2024-05-17T11:39:43,046 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-05-17T11:39:43,047 instead of `find_packages(...)`/`find:`). 2024-05-17T11:39:43,048 You can read more about "package discovery" on setuptools documentation page: 2024-05-17T11:39:43,049 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-05-17T11:39:43,050 If you don't want 'multiqc.modules.gopeaks' to be distributed and are 2024-05-17T11:39:43,050 already explicitly excluding 'multiqc.modules.gopeaks' via 2024-05-17T11:39:43,051 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-05-17T11:39:43,051 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-05-17T11:39:43,052 combination with a more fine grained `package-data` configuration. 2024-05-17T11:39:43,053 You can read more about "package data files" on setuptools documentation page: 2024-05-17T11:39:43,053 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-05-17T11:39:43,054 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-05-17T11:39:43,055 even if it does not contain any `.py` files. 2024-05-17T11:39:43,055 On the other hand, currently there is no concept of package data 2024-05-17T11:39:43,055 directory, all directories are treated like packages. 2024-05-17T11:39:43,056 ******************************************************************************** 2024-05-17T11:39:43,057 !! 2024-05-17T11:39:43,057 check.warn(importable) 2024-05-17T11:39:43,057 /tmp/pip-build-env-u8mgr1go/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'multiqc.modules.happy' is absent from the `packages` configuration. 2024-05-17T11:39:43,058 !! 2024-05-17T11:39:43,058 ******************************************************************************** 2024-05-17T11:39:43,059 ############################ 2024-05-17T11:39:43,060 # Package would be ignored # 2024-05-17T11:39:43,060 ############################ 2024-05-17T11:39:43,060 Python recognizes 'multiqc.modules.happy' as an importable package[^1], 2024-05-17T11:39:43,061 but it is absent from setuptools' `packages` configuration. 2024-05-17T11:39:43,062 This leads to an ambiguous overall configuration. If you want to distribute this 2024-05-17T11:39:43,063 package, please make sure that 'multiqc.modules.happy' is explicitly added 2024-05-17T11:39:43,063 to the `packages` configuration field. 2024-05-17T11:39:43,064 Alternatively, you can also rely on setuptools' discovery methods 2024-05-17T11:39:43,065 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-05-17T11:39:43,066 instead of `find_packages(...)`/`find:`). 2024-05-17T11:39:43,067 You can read more about "package discovery" on setuptools documentation page: 2024-05-17T11:39:43,068 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-05-17T11:39:43,070 If you don't want 'multiqc.modules.happy' to be distributed and are 2024-05-17T11:39:43,070 already explicitly excluding 'multiqc.modules.happy' via 2024-05-17T11:39:43,071 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-05-17T11:39:43,071 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-05-17T11:39:43,072 combination with a more fine grained `package-data` configuration. 2024-05-17T11:39:43,073 You can read more about "package data files" on setuptools documentation page: 2024-05-17T11:39:43,074 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-05-17T11:39:43,075 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-05-17T11:39:43,076 even if it does not contain any `.py` files. 2024-05-17T11:39:43,076 On the other hand, currently there is no concept of package data 2024-05-17T11:39:43,077 directory, all directories are treated like packages. 2024-05-17T11:39:43,077 ******************************************************************************** 2024-05-17T11:39:43,078 !! 2024-05-17T11:39:43,079 check.warn(importable) 2024-05-17T11:39:43,079 /tmp/pip-build-env-u8mgr1go/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'multiqc.modules.hicexplorer' is absent from the `packages` configuration. 2024-05-17T11:39:43,080 !! 2024-05-17T11:39:43,081 ******************************************************************************** 2024-05-17T11:39:43,081 ############################ 2024-05-17T11:39:43,082 # Package would be ignored # 2024-05-17T11:39:43,082 ############################ 2024-05-17T11:39:43,083 Python recognizes 'multiqc.modules.hicexplorer' as an importable package[^1], 2024-05-17T11:39:43,083 but it is absent from setuptools' `packages` configuration. 2024-05-17T11:39:43,084 This leads to an ambiguous overall configuration. If you want to distribute this 2024-05-17T11:39:43,084 package, please make sure that 'multiqc.modules.hicexplorer' is explicitly added 2024-05-17T11:39:43,084 to the `packages` configuration field. 2024-05-17T11:39:43,085 Alternatively, you can also rely on setuptools' discovery methods 2024-05-17T11:39:43,086 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-05-17T11:39:43,086 instead of `find_packages(...)`/`find:`). 2024-05-17T11:39:43,087 You can read more about "package discovery" on setuptools documentation page: 2024-05-17T11:39:43,087 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-05-17T11:39:43,088 If you don't want 'multiqc.modules.hicexplorer' to be distributed and are 2024-05-17T11:39:43,089 already explicitly excluding 'multiqc.modules.hicexplorer' via 2024-05-17T11:39:43,089 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-05-17T11:39:43,090 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-05-17T11:39:43,090 combination with a more fine grained `package-data` configuration. 2024-05-17T11:39:43,091 You can read more about "package data files" on setuptools documentation page: 2024-05-17T11:39:43,092 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-05-17T11:39:43,094 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-05-17T11:39:43,094 even if it does not contain any `.py` files. 2024-05-17T11:39:43,095 On the other hand, currently there is no concept of package data 2024-05-17T11:39:43,095 directory, all directories are treated like packages. 2024-05-17T11:39:43,096 ******************************************************************************** 2024-05-17T11:39:43,097 !! 2024-05-17T11:39:43,098 check.warn(importable) 2024-05-17T11:39:43,099 /tmp/pip-build-env-u8mgr1go/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'multiqc.modules.hicpro' is absent from the `packages` configuration. 2024-05-17T11:39:43,099 !! 2024-05-17T11:39:43,101 ******************************************************************************** 2024-05-17T11:39:43,101 ############################ 2024-05-17T11:39:43,102 # Package would be ignored # 2024-05-17T11:39:43,103 ############################ 2024-05-17T11:39:43,103 Python recognizes 'multiqc.modules.hicpro' as an importable package[^1], 2024-05-17T11:39:43,104 but it is absent from setuptools' `packages` configuration. 2024-05-17T11:39:43,105 This leads to an ambiguous overall configuration. If you want to distribute this 2024-05-17T11:39:43,106 package, please make sure that 'multiqc.modules.hicpro' is explicitly added 2024-05-17T11:39:43,106 to the `packages` configuration field. 2024-05-17T11:39:43,108 Alternatively, you can also rely on setuptools' discovery methods 2024-05-17T11:39:43,108 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-05-17T11:39:43,109 instead of `find_packages(...)`/`find:`). 2024-05-17T11:39:43,110 You can read more about "package discovery" on setuptools documentation page: 2024-05-17T11:39:43,111 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-05-17T11:39:43,113 If you don't want 'multiqc.modules.hicpro' to be distributed and are 2024-05-17T11:39:43,113 already explicitly excluding 'multiqc.modules.hicpro' via 2024-05-17T11:39:43,113 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-05-17T11:39:43,114 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-05-17T11:39:43,114 combination with a more fine grained `package-data` configuration. 2024-05-17T11:39:43,115 You can read more about "package data files" on setuptools documentation page: 2024-05-17T11:39:43,116 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-05-17T11:39:43,117 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-05-17T11:39:43,117 even if it does not contain any `.py` files. 2024-05-17T11:39:43,118 On the other hand, currently there is no concept of package data 2024-05-17T11:39:43,118 directory, all directories are treated like packages. 2024-05-17T11:39:43,118 ******************************************************************************** 2024-05-17T11:39:43,119 !! 2024-05-17T11:39:43,120 check.warn(importable) 2024-05-17T11:39:43,120 /tmp/pip-build-env-u8mgr1go/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'multiqc.modules.hicup' is absent from the `packages` configuration. 2024-05-17T11:39:43,120 !! 2024-05-17T11:39:43,122 ******************************************************************************** 2024-05-17T11:39:43,122 ############################ 2024-05-17T11:39:43,123 # Package would be ignored # 2024-05-17T11:39:43,123 ############################ 2024-05-17T11:39:43,124 Python recognizes 'multiqc.modules.hicup' as an importable package[^1], 2024-05-17T11:39:43,125 but it is absent from setuptools' `packages` configuration. 2024-05-17T11:39:43,126 This leads to an ambiguous overall configuration. If you want to distribute this 2024-05-17T11:39:43,126 package, please make sure that 'multiqc.modules.hicup' is explicitly added 2024-05-17T11:39:43,127 to the `packages` configuration field. 2024-05-17T11:39:43,128 Alternatively, you can also rely on setuptools' discovery methods 2024-05-17T11:39:43,129 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-05-17T11:39:43,129 instead of `find_packages(...)`/`find:`). 2024-05-17T11:39:43,130 You can read more about "package discovery" on setuptools documentation page: 2024-05-17T11:39:43,131 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-05-17T11:39:43,132 If you don't want 'multiqc.modules.hicup' to be distributed and are 2024-05-17T11:39:43,133 already explicitly excluding 'multiqc.modules.hicup' via 2024-05-17T11:39:43,133 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-05-17T11:39:43,134 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-05-17T11:39:43,134 combination with a more fine grained `package-data` configuration. 2024-05-17T11:39:43,135 You can read more about "package data files" on setuptools documentation page: 2024-05-17T11:39:43,136 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-05-17T11:39:43,138 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-05-17T11:39:43,138 even if it does not contain any `.py` files. 2024-05-17T11:39:43,139 On the other hand, currently there is no concept of package data 2024-05-17T11:39:43,140 directory, all directories are treated like packages. 2024-05-17T11:39:43,140 ******************************************************************************** 2024-05-17T11:39:43,142 !! 2024-05-17T11:39:43,142 check.warn(importable) 2024-05-17T11:39:43,142 /tmp/pip-build-env-u8mgr1go/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'multiqc.modules.hifiasm' is absent from the `packages` configuration. 2024-05-17T11:39:43,143 !! 2024-05-17T11:39:43,144 ******************************************************************************** 2024-05-17T11:39:43,144 ############################ 2024-05-17T11:39:43,144 # Package would be ignored # 2024-05-17T11:39:43,145 ############################ 2024-05-17T11:39:43,145 Python recognizes 'multiqc.modules.hifiasm' as an importable package[^1], 2024-05-17T11:39:43,146 but it is absent from setuptools' `packages` configuration. 2024-05-17T11:39:43,147 This leads to an ambiguous overall configuration. If you want to distribute this 2024-05-17T11:39:43,147 package, please make sure that 'multiqc.modules.hifiasm' is explicitly added 2024-05-17T11:39:43,148 to the `packages` configuration field. 2024-05-17T11:39:43,148 Alternatively, you can also rely on setuptools' discovery methods 2024-05-17T11:39:43,149 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-05-17T11:39:43,149 instead of `find_packages(...)`/`find:`). 2024-05-17T11:39:43,150 You can read more about "package discovery" on setuptools documentation page: 2024-05-17T11:39:43,151 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-05-17T11:39:43,152 If you don't want 'multiqc.modules.hifiasm' to be distributed and are 2024-05-17T11:39:43,152 already explicitly excluding 'multiqc.modules.hifiasm' via 2024-05-17T11:39:43,153 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-05-17T11:39:43,153 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-05-17T11:39:43,154 combination with a more fine grained `package-data` configuration. 2024-05-17T11:39:43,155 You can read more about "package data files" on setuptools documentation page: 2024-05-17T11:39:43,156 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-05-17T11:39:43,158 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-05-17T11:39:43,158 even if it does not contain any `.py` files. 2024-05-17T11:39:43,159 On the other hand, currently there is no concept of package data 2024-05-17T11:39:43,160 directory, all directories are treated like packages. 2024-05-17T11:39:43,160 ******************************************************************************** 2024-05-17T11:39:43,161 !! 2024-05-17T11:39:43,162 check.warn(importable) 2024-05-17T11:39:43,162 /tmp/pip-build-env-u8mgr1go/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'multiqc.modules.hisat2' is absent from the `packages` configuration. 2024-05-17T11:39:43,163 !! 2024-05-17T11:39:43,164 ******************************************************************************** 2024-05-17T11:39:43,164 ############################ 2024-05-17T11:39:43,165 # Package would be ignored # 2024-05-17T11:39:43,165 ############################ 2024-05-17T11:39:43,165 Python recognizes 'multiqc.modules.hisat2' as an importable package[^1], 2024-05-17T11:39:43,166 but it is absent from setuptools' `packages` configuration. 2024-05-17T11:39:43,167 This leads to an ambiguous overall configuration. If you want to distribute this 2024-05-17T11:39:43,168 package, please make sure that 'multiqc.modules.hisat2' is explicitly added 2024-05-17T11:39:43,168 to the `packages` configuration field. 2024-05-17T11:39:43,170 Alternatively, you can also rely on setuptools' discovery methods 2024-05-17T11:39:43,170 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-05-17T11:39:43,170 instead of `find_packages(...)`/`find:`). 2024-05-17T11:39:43,171 You can read more about "package discovery" on setuptools documentation page: 2024-05-17T11:39:43,172 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-05-17T11:39:43,172 If you don't want 'multiqc.modules.hisat2' to be distributed and are 2024-05-17T11:39:43,173 already explicitly excluding 'multiqc.modules.hisat2' via 2024-05-17T11:39:43,173 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-05-17T11:39:43,173 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-05-17T11:39:43,174 combination with a more fine grained `package-data` configuration. 2024-05-17T11:39:43,175 You can read more about "package data files" on setuptools documentation page: 2024-05-17T11:39:43,175 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-05-17T11:39:43,177 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-05-17T11:39:43,177 even if it does not contain any `.py` files. 2024-05-17T11:39:43,177 On the other hand, currently there is no concept of package data 2024-05-17T11:39:43,178 directory, all directories are treated like packages. 2024-05-17T11:39:43,178 ******************************************************************************** 2024-05-17T11:39:43,179 !! 2024-05-17T11:39:43,180 check.warn(importable) 2024-05-17T11:39:43,180 /tmp/pip-build-env-u8mgr1go/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'multiqc.modules.homer' is absent from the `packages` configuration. 2024-05-17T11:39:43,181 !! 2024-05-17T11:39:43,182 ******************************************************************************** 2024-05-17T11:39:43,182 ############################ 2024-05-17T11:39:43,183 # Package would be ignored # 2024-05-17T11:39:43,183 ############################ 2024-05-17T11:39:43,184 Python recognizes 'multiqc.modules.homer' as an importable package[^1], 2024-05-17T11:39:43,185 but it is absent from setuptools' `packages` configuration. 2024-05-17T11:39:43,186 This leads to an ambiguous overall configuration. If you want to distribute this 2024-05-17T11:39:43,186 package, please make sure that 'multiqc.modules.homer' is explicitly added 2024-05-17T11:39:43,187 to the `packages` configuration field. 2024-05-17T11:39:43,188 Alternatively, you can also rely on setuptools' discovery methods 2024-05-17T11:39:43,188 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-05-17T11:39:43,189 instead of `find_packages(...)`/`find:`). 2024-05-17T11:39:43,190 You can read more about "package discovery" on setuptools documentation page: 2024-05-17T11:39:43,191 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-05-17T11:39:43,192 If you don't want 'multiqc.modules.homer' to be distributed and are 2024-05-17T11:39:43,193 already explicitly excluding 'multiqc.modules.homer' via 2024-05-17T11:39:43,194 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-05-17T11:39:43,194 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-05-17T11:39:43,195 combination with a more fine grained `package-data` configuration. 2024-05-17T11:39:43,196 You can read more about "package data files" on setuptools documentation page: 2024-05-17T11:39:43,198 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-05-17T11:39:43,200 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-05-17T11:39:43,201 even if it does not contain any `.py` files. 2024-05-17T11:39:43,201 On the other hand, currently there is no concept of package data 2024-05-17T11:39:43,202 directory, all directories are treated like packages. 2024-05-17T11:39:43,202 ******************************************************************************** 2024-05-17T11:39:43,204 !! 2024-05-17T11:39:43,204 check.warn(importable) 2024-05-17T11:39:43,205 /tmp/pip-build-env-u8mgr1go/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'multiqc.modules.hops' is absent from the `packages` configuration. 2024-05-17T11:39:43,205 !! 2024-05-17T11:39:43,207 ******************************************************************************** 2024-05-17T11:39:43,207 ############################ 2024-05-17T11:39:43,208 # Package would be ignored # 2024-05-17T11:39:43,208 ############################ 2024-05-17T11:39:43,209 Python recognizes 'multiqc.modules.hops' as an importable package[^1], 2024-05-17T11:39:43,209 but it is absent from setuptools' `packages` configuration. 2024-05-17T11:39:43,210 This leads to an ambiguous overall configuration. If you want to distribute this 2024-05-17T11:39:43,210 package, please make sure that 'multiqc.modules.hops' is explicitly added 2024-05-17T11:39:43,211 to the `packages` configuration field. 2024-05-17T11:39:43,212 Alternatively, you can also rely on setuptools' discovery methods 2024-05-17T11:39:43,212 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-05-17T11:39:43,212 instead of `find_packages(...)`/`find:`). 2024-05-17T11:39:43,213 You can read more about "package discovery" on setuptools documentation page: 2024-05-17T11:39:43,214 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-05-17T11:39:43,215 If you don't want 'multiqc.modules.hops' to be distributed and are 2024-05-17T11:39:43,216 already explicitly excluding 'multiqc.modules.hops' via 2024-05-17T11:39:43,216 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-05-17T11:39:43,217 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-05-17T11:39:43,218 combination with a more fine grained `package-data` configuration. 2024-05-17T11:39:43,219 You can read more about "package data files" on setuptools documentation page: 2024-05-17T11:39:43,220 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-05-17T11:39:43,221 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-05-17T11:39:43,221 even if it does not contain any `.py` files. 2024-05-17T11:39:43,222 On the other hand, currently there is no concept of package data 2024-05-17T11:39:43,222 directory, all directories are treated like packages. 2024-05-17T11:39:43,223 ******************************************************************************** 2024-05-17T11:39:43,224 !! 2024-05-17T11:39:43,224 check.warn(importable) 2024-05-17T11:39:43,225 /tmp/pip-build-env-u8mgr1go/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'multiqc.modules.hostile' is absent from the `packages` configuration. 2024-05-17T11:39:43,225 !! 2024-05-17T11:39:43,227 ******************************************************************************** 2024-05-17T11:39:43,227 ############################ 2024-05-17T11:39:43,228 # Package would be ignored # 2024-05-17T11:39:43,228 ############################ 2024-05-17T11:39:43,229 Python recognizes 'multiqc.modules.hostile' as an importable package[^1], 2024-05-17T11:39:43,229 but it is absent from setuptools' `packages` configuration. 2024-05-17T11:39:43,231 This leads to an ambiguous overall configuration. If you want to distribute this 2024-05-17T11:39:43,231 package, please make sure that 'multiqc.modules.hostile' is explicitly added 2024-05-17T11:39:43,231 to the `packages` configuration field. 2024-05-17T11:39:43,232 Alternatively, you can also rely on setuptools' discovery methods 2024-05-17T11:39:43,232 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-05-17T11:39:43,233 instead of `find_packages(...)`/`find:`). 2024-05-17T11:39:43,233 You can read more about "package discovery" on setuptools documentation page: 2024-05-17T11:39:43,234 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-05-17T11:39:43,235 If you don't want 'multiqc.modules.hostile' to be distributed and are 2024-05-17T11:39:43,235 already explicitly excluding 'multiqc.modules.hostile' via 2024-05-17T11:39:43,235 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-05-17T11:39:43,236 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-05-17T11:39:43,236 combination with a more fine grained `package-data` configuration. 2024-05-17T11:39:43,237 You can read more about "package data files" on setuptools documentation page: 2024-05-17T11:39:43,238 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-05-17T11:39:43,239 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-05-17T11:39:43,240 even if it does not contain any `.py` files. 2024-05-17T11:39:43,240 On the other hand, currently there is no concept of package data 2024-05-17T11:39:43,241 directory, all directories are treated like packages. 2024-05-17T11:39:43,242 ******************************************************************************** 2024-05-17T11:39:43,243 !! 2024-05-17T11:39:43,243 check.warn(importable) 2024-05-17T11:39:43,244 /tmp/pip-build-env-u8mgr1go/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'multiqc.modules.htseq' is absent from the `packages` configuration. 2024-05-17T11:39:43,244 !! 2024-05-17T11:39:43,246 ******************************************************************************** 2024-05-17T11:39:43,246 ############################ 2024-05-17T11:39:43,247 # Package would be ignored # 2024-05-17T11:39:43,247 ############################ 2024-05-17T11:39:43,248 Python recognizes 'multiqc.modules.htseq' as an importable package[^1], 2024-05-17T11:39:43,249 but it is absent from setuptools' `packages` configuration. 2024-05-17T11:39:43,250 This leads to an ambiguous overall configuration. If you want to distribute this 2024-05-17T11:39:43,251 package, please make sure that 'multiqc.modules.htseq' is explicitly added 2024-05-17T11:39:43,251 to the `packages` configuration field. 2024-05-17T11:39:43,253 Alternatively, you can also rely on setuptools' discovery methods 2024-05-17T11:39:43,253 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-05-17T11:39:43,254 instead of `find_packages(...)`/`find:`). 2024-05-17T11:39:43,255 You can read more about "package discovery" on setuptools documentation page: 2024-05-17T11:39:43,257 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-05-17T11:39:43,258 If you don't want 'multiqc.modules.htseq' to be distributed and are 2024-05-17T11:39:43,258 already explicitly excluding 'multiqc.modules.htseq' via 2024-05-17T11:39:43,259 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-05-17T11:39:43,259 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-05-17T11:39:43,260 combination with a more fine grained `package-data` configuration. 2024-05-17T11:39:43,261 You can read more about "package data files" on setuptools documentation page: 2024-05-17T11:39:43,262 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-05-17T11:39:43,262 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-05-17T11:39:43,263 even if it does not contain any `.py` files. 2024-05-17T11:39:43,263 On the other hand, currently there is no concept of package data 2024-05-17T11:39:43,263 directory, all directories are treated like packages. 2024-05-17T11:39:43,264 ******************************************************************************** 2024-05-17T11:39:43,264 !! 2024-05-17T11:39:43,265 check.warn(importable) 2024-05-17T11:39:43,265 /tmp/pip-build-env-u8mgr1go/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'multiqc.modules.humid' is absent from the `packages` configuration. 2024-05-17T11:39:43,265 !! 2024-05-17T11:39:43,266 ******************************************************************************** 2024-05-17T11:39:43,267 ############################ 2024-05-17T11:39:43,267 # Package would be ignored # 2024-05-17T11:39:43,267 ############################ 2024-05-17T11:39:43,268 Python recognizes 'multiqc.modules.humid' as an importable package[^1], 2024-05-17T11:39:43,268 but it is absent from setuptools' `packages` configuration. 2024-05-17T11:39:43,269 This leads to an ambiguous overall configuration. If you want to distribute this 2024-05-17T11:39:43,269 package, please make sure that 'multiqc.modules.humid' is explicitly added 2024-05-17T11:39:43,270 to the `packages` configuration field. 2024-05-17T11:39:43,271 Alternatively, you can also rely on setuptools' discovery methods 2024-05-17T11:39:43,272 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-05-17T11:39:43,272 instead of `find_packages(...)`/`find:`). 2024-05-17T11:39:43,273 You can read more about "package discovery" on setuptools documentation page: 2024-05-17T11:39:43,274 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-05-17T11:39:43,276 If you don't want 'multiqc.modules.humid' to be distributed and are 2024-05-17T11:39:43,276 already explicitly excluding 'multiqc.modules.humid' via 2024-05-17T11:39:43,277 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-05-17T11:39:43,277 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-05-17T11:39:43,278 combination with a more fine grained `package-data` configuration. 2024-05-17T11:39:43,279 You can read more about "package data files" on setuptools documentation page: 2024-05-17T11:39:43,280 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-05-17T11:39:43,281 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-05-17T11:39:43,282 even if it does not contain any `.py` files. 2024-05-17T11:39:43,282 On the other hand, currently there is no concept of package data 2024-05-17T11:39:43,283 directory, all directories are treated like packages. 2024-05-17T11:39:43,283 ******************************************************************************** 2024-05-17T11:39:43,284 !! 2024-05-17T11:39:43,285 check.warn(importable) 2024-05-17T11:39:43,286 /tmp/pip-build-env-u8mgr1go/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'multiqc.modules.interop' is absent from the `packages` configuration. 2024-05-17T11:39:43,286 !! 2024-05-17T11:39:43,289 ******************************************************************************** 2024-05-17T11:39:43,289 ############################ 2024-05-17T11:39:43,290 # Package would be ignored # 2024-05-17T11:39:43,290 ############################ 2024-05-17T11:39:43,291 Python recognizes 'multiqc.modules.interop' as an importable package[^1], 2024-05-17T11:39:43,291 but it is absent from setuptools' `packages` configuration. 2024-05-17T11:39:43,292 This leads to an ambiguous overall configuration. If you want to distribute this 2024-05-17T11:39:43,293 package, please make sure that 'multiqc.modules.interop' is explicitly added 2024-05-17T11:39:43,293 to the `packages` configuration field. 2024-05-17T11:39:43,294 Alternatively, you can also rely on setuptools' discovery methods 2024-05-17T11:39:43,294 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-05-17T11:39:43,295 instead of `find_packages(...)`/`find:`). 2024-05-17T11:39:43,296 You can read more about "package discovery" on setuptools documentation page: 2024-05-17T11:39:43,297 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-05-17T11:39:43,298 If you don't want 'multiqc.modules.interop' to be distributed and are 2024-05-17T11:39:43,299 already explicitly excluding 'multiqc.modules.interop' via 2024-05-17T11:39:43,300 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-05-17T11:39:43,300 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-05-17T11:39:43,301 combination with a more fine grained `package-data` configuration. 2024-05-17T11:39:43,302 You can read more about "package data files" on setuptools documentation page: 2024-05-17T11:39:43,303 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-05-17T11:39:43,304 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-05-17T11:39:43,305 even if it does not contain any `.py` files. 2024-05-17T11:39:43,306 On the other hand, currently there is no concept of package data 2024-05-17T11:39:43,306 directory, all directories are treated like packages. 2024-05-17T11:39:43,307 ******************************************************************************** 2024-05-17T11:39:43,309 !! 2024-05-17T11:39:43,310 check.warn(importable) 2024-05-17T11:39:43,310 /tmp/pip-build-env-u8mgr1go/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'multiqc.modules.isoseq' is absent from the `packages` configuration. 2024-05-17T11:39:43,311 !! 2024-05-17T11:39:43,312 ******************************************************************************** 2024-05-17T11:39:43,313 ############################ 2024-05-17T11:39:43,313 # Package would be ignored # 2024-05-17T11:39:43,313 ############################ 2024-05-17T11:39:43,314 Python recognizes 'multiqc.modules.isoseq' as an importable package[^1], 2024-05-17T11:39:43,314 but it is absent from setuptools' `packages` configuration. 2024-05-17T11:39:43,316 This leads to an ambiguous overall configuration. If you want to distribute this 2024-05-17T11:39:43,316 package, please make sure that 'multiqc.modules.isoseq' is explicitly added 2024-05-17T11:39:43,316 to the `packages` configuration field. 2024-05-17T11:39:43,318 Alternatively, you can also rely on setuptools' discovery methods 2024-05-17T11:39:43,318 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-05-17T11:39:43,319 instead of `find_packages(...)`/`find:`). 2024-05-17T11:39:43,320 You can read more about "package discovery" on setuptools documentation page: 2024-05-17T11:39:43,321 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-05-17T11:39:43,322 If you don't want 'multiqc.modules.isoseq' to be distributed and are 2024-05-17T11:39:43,322 already explicitly excluding 'multiqc.modules.isoseq' via 2024-05-17T11:39:43,323 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-05-17T11:39:43,323 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-05-17T11:39:43,323 combination with a more fine grained `package-data` configuration. 2024-05-17T11:39:43,324 You can read more about "package data files" on setuptools documentation page: 2024-05-17T11:39:43,325 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-05-17T11:39:43,326 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-05-17T11:39:43,326 even if it does not contain any `.py` files. 2024-05-17T11:39:43,327 On the other hand, currently there is no concept of package data 2024-05-17T11:39:43,327 directory, all directories are treated like packages. 2024-05-17T11:39:43,328 ******************************************************************************** 2024-05-17T11:39:43,329 !! 2024-05-17T11:39:43,329 check.warn(importable) 2024-05-17T11:39:43,329 /tmp/pip-build-env-u8mgr1go/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'multiqc.modules.ivar' is absent from the `packages` configuration. 2024-05-17T11:39:43,330 !! 2024-05-17T11:39:43,331 ******************************************************************************** 2024-05-17T11:39:43,332 ############################ 2024-05-17T11:39:43,332 # Package would be ignored # 2024-05-17T11:39:43,333 ############################ 2024-05-17T11:39:43,334 Python recognizes 'multiqc.modules.ivar' as an importable package[^1], 2024-05-17T11:39:43,335 but it is absent from setuptools' `packages` configuration. 2024-05-17T11:39:43,336 This leads to an ambiguous overall configuration. If you want to distribute this 2024-05-17T11:39:43,337 package, please make sure that 'multiqc.modules.ivar' is explicitly added 2024-05-17T11:39:43,338 to the `packages` configuration field. 2024-05-17T11:39:43,339 Alternatively, you can also rely on setuptools' discovery methods 2024-05-17T11:39:43,340 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-05-17T11:39:43,341 instead of `find_packages(...)`/`find:`). 2024-05-17T11:39:43,343 You can read more about "package discovery" on setuptools documentation page: 2024-05-17T11:39:43,344 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-05-17T11:39:43,346 If you don't want 'multiqc.modules.ivar' to be distributed and are 2024-05-17T11:39:43,347 already explicitly excluding 'multiqc.modules.ivar' via 2024-05-17T11:39:43,348 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-05-17T11:39:43,349 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-05-17T11:39:43,350 combination with a more fine grained `package-data` configuration. 2024-05-17T11:39:43,352 You can read more about "package data files" on setuptools documentation page: 2024-05-17T11:39:43,354 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-05-17T11:39:43,357 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-05-17T11:39:43,358 even if it does not contain any `.py` files. 2024-05-17T11:39:43,358 On the other hand, currently there is no concept of package data 2024-05-17T11:39:43,359 directory, all directories are treated like packages. 2024-05-17T11:39:43,359 ******************************************************************************** 2024-05-17T11:39:43,361 !! 2024-05-17T11:39:43,361 check.warn(importable) 2024-05-17T11:39:43,361 /tmp/pip-build-env-u8mgr1go/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'multiqc.modules.jcvi' is absent from the `packages` configuration. 2024-05-17T11:39:43,362 !! 2024-05-17T11:39:43,362 ******************************************************************************** 2024-05-17T11:39:43,363 ############################ 2024-05-17T11:39:43,363 # Package would be ignored # 2024-05-17T11:39:43,363 ############################ 2024-05-17T11:39:43,364 Python recognizes 'multiqc.modules.jcvi' as an importable package[^1], 2024-05-17T11:39:43,364 but it is absent from setuptools' `packages` configuration. 2024-05-17T11:39:43,365 This leads to an ambiguous overall configuration. If you want to distribute this 2024-05-17T11:39:43,365 package, please make sure that 'multiqc.modules.jcvi' is explicitly added 2024-05-17T11:39:43,366 to the `packages` configuration field. 2024-05-17T11:39:43,367 Alternatively, you can also rely on setuptools' discovery methods 2024-05-17T11:39:43,367 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-05-17T11:39:43,368 instead of `find_packages(...)`/`find:`). 2024-05-17T11:39:43,368 You can read more about "package discovery" on setuptools documentation page: 2024-05-17T11:39:43,369 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-05-17T11:39:43,371 If you don't want 'multiqc.modules.jcvi' to be distributed and are 2024-05-17T11:39:43,371 already explicitly excluding 'multiqc.modules.jcvi' via 2024-05-17T11:39:43,372 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-05-17T11:39:43,373 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-05-17T11:39:43,373 combination with a more fine grained `package-data` configuration. 2024-05-17T11:39:43,375 You can read more about "package data files" on setuptools documentation page: 2024-05-17T11:39:43,376 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-05-17T11:39:43,378 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-05-17T11:39:43,379 even if it does not contain any `.py` files. 2024-05-17T11:39:43,380 On the other hand, currently there is no concept of package data 2024-05-17T11:39:43,381 directory, all directories are treated like packages. 2024-05-17T11:39:43,382 ******************************************************************************** 2024-05-17T11:39:43,383 !! 2024-05-17T11:39:43,384 check.warn(importable) 2024-05-17T11:39:43,385 /tmp/pip-build-env-u8mgr1go/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'multiqc.modules.jellyfish' is absent from the `packages` configuration. 2024-05-17T11:39:43,386 !! 2024-05-17T11:39:43,387 ******************************************************************************** 2024-05-17T11:39:43,388 ############################ 2024-05-17T11:39:43,388 # Package would be ignored # 2024-05-17T11:39:43,389 ############################ 2024-05-17T11:39:43,390 Python recognizes 'multiqc.modules.jellyfish' as an importable package[^1], 2024-05-17T11:39:43,391 but it is absent from setuptools' `packages` configuration. 2024-05-17T11:39:43,392 This leads to an ambiguous overall configuration. If you want to distribute this 2024-05-17T11:39:43,393 package, please make sure that 'multiqc.modules.jellyfish' is explicitly added 2024-05-17T11:39:43,394 to the `packages` configuration field. 2024-05-17T11:39:43,395 Alternatively, you can also rely on setuptools' discovery methods 2024-05-17T11:39:43,395 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-05-17T11:39:43,395 instead of `find_packages(...)`/`find:`). 2024-05-17T11:39:43,396 You can read more about "package discovery" on setuptools documentation page: 2024-05-17T11:39:43,397 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-05-17T11:39:43,397 If you don't want 'multiqc.modules.jellyfish' to be distributed and are 2024-05-17T11:39:43,398 already explicitly excluding 'multiqc.modules.jellyfish' via 2024-05-17T11:39:43,398 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-05-17T11:39:43,398 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-05-17T11:39:43,399 combination with a more fine grained `package-data` configuration. 2024-05-17T11:39:43,400 You can read more about "package data files" on setuptools documentation page: 2024-05-17T11:39:43,400 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-05-17T11:39:43,402 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-05-17T11:39:43,402 even if it does not contain any `.py` files. 2024-05-17T11:39:43,403 On the other hand, currently there is no concept of package data 2024-05-17T11:39:43,403 directory, all directories are treated like packages. 2024-05-17T11:39:43,404 ******************************************************************************** 2024-05-17T11:39:43,405 !! 2024-05-17T11:39:43,405 check.warn(importable) 2024-05-17T11:39:43,406 /tmp/pip-build-env-u8mgr1go/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'multiqc.modules.kaiju' is absent from the `packages` configuration. 2024-05-17T11:39:43,406 !! 2024-05-17T11:39:43,408 ******************************************************************************** 2024-05-17T11:39:43,408 ############################ 2024-05-17T11:39:43,409 # Package would be ignored # 2024-05-17T11:39:43,409 ############################ 2024-05-17T11:39:43,410 Python recognizes 'multiqc.modules.kaiju' as an importable package[^1], 2024-05-17T11:39:43,410 but it is absent from setuptools' `packages` configuration. 2024-05-17T11:39:43,412 This leads to an ambiguous overall configuration. If you want to distribute this 2024-05-17T11:39:43,412 package, please make sure that 'multiqc.modules.kaiju' is explicitly added 2024-05-17T11:39:43,413 to the `packages` configuration field. 2024-05-17T11:39:43,414 Alternatively, you can also rely on setuptools' discovery methods 2024-05-17T11:39:43,414 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-05-17T11:39:43,414 instead of `find_packages(...)`/`find:`). 2024-05-17T11:39:43,416 You can read more about "package discovery" on setuptools documentation page: 2024-05-17T11:39:43,416 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-05-17T11:39:43,417 If you don't want 'multiqc.modules.kaiju' to be distributed and are 2024-05-17T11:39:43,418 already explicitly excluding 'multiqc.modules.kaiju' via 2024-05-17T11:39:43,418 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-05-17T11:39:43,419 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-05-17T11:39:43,419 combination with a more fine grained `package-data` configuration. 2024-05-17T11:39:43,420 You can read more about "package data files" on setuptools documentation page: 2024-05-17T11:39:43,422 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-05-17T11:39:43,423 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-05-17T11:39:43,423 even if it does not contain any `.py` files. 2024-05-17T11:39:43,423 On the other hand, currently there is no concept of package data 2024-05-17T11:39:43,424 directory, all directories are treated like packages. 2024-05-17T11:39:43,424 ******************************************************************************** 2024-05-17T11:39:43,425 !! 2024-05-17T11:39:43,425 check.warn(importable) 2024-05-17T11:39:43,425 /tmp/pip-build-env-u8mgr1go/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'multiqc.modules.kallisto' is absent from the `packages` configuration. 2024-05-17T11:39:43,426 !! 2024-05-17T11:39:43,427 ******************************************************************************** 2024-05-17T11:39:43,427 ############################ 2024-05-17T11:39:43,427 # Package would be ignored # 2024-05-17T11:39:43,428 ############################ 2024-05-17T11:39:43,428 Python recognizes 'multiqc.modules.kallisto' as an importable package[^1], 2024-05-17T11:39:43,429 but it is absent from setuptools' `packages` configuration. 2024-05-17T11:39:43,429 This leads to an ambiguous overall configuration. If you want to distribute this 2024-05-17T11:39:43,430 package, please make sure that 'multiqc.modules.kallisto' is explicitly added 2024-05-17T11:39:43,430 to the `packages` configuration field. 2024-05-17T11:39:43,431 Alternatively, you can also rely on setuptools' discovery methods 2024-05-17T11:39:43,432 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-05-17T11:39:43,432 instead of `find_packages(...)`/`find:`). 2024-05-17T11:39:43,433 You can read more about "package discovery" on setuptools documentation page: 2024-05-17T11:39:43,434 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-05-17T11:39:43,435 If you don't want 'multiqc.modules.kallisto' to be distributed and are 2024-05-17T11:39:43,436 already explicitly excluding 'multiqc.modules.kallisto' via 2024-05-17T11:39:43,437 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-05-17T11:39:43,437 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-05-17T11:39:43,438 combination with a more fine grained `package-data` configuration. 2024-05-17T11:39:43,439 You can read more about "package data files" on setuptools documentation page: 2024-05-17T11:39:43,440 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-05-17T11:39:43,442 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-05-17T11:39:43,442 even if it does not contain any `.py` files. 2024-05-17T11:39:43,443 On the other hand, currently there is no concept of package data 2024-05-17T11:39:43,443 directory, all directories are treated like packages. 2024-05-17T11:39:43,444 ******************************************************************************** 2024-05-17T11:39:43,445 !! 2024-05-17T11:39:43,445 check.warn(importable) 2024-05-17T11:39:43,446 /tmp/pip-build-env-u8mgr1go/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'multiqc.modules.kat' is absent from the `packages` configuration. 2024-05-17T11:39:43,446 !! 2024-05-17T11:39:43,447 ******************************************************************************** 2024-05-17T11:39:43,448 ############################ 2024-05-17T11:39:43,448 # Package would be ignored # 2024-05-17T11:39:43,449 ############################ 2024-05-17T11:39:43,449 Python recognizes 'multiqc.modules.kat' as an importable package[^1], 2024-05-17T11:39:43,450 but it is absent from setuptools' `packages` configuration. 2024-05-17T11:39:43,451 This leads to an ambiguous overall configuration. If you want to distribute this 2024-05-17T11:39:43,451 package, please make sure that 'multiqc.modules.kat' is explicitly added 2024-05-17T11:39:43,451 to the `packages` configuration field. 2024-05-17T11:39:43,452 Alternatively, you can also rely on setuptools' discovery methods 2024-05-17T11:39:43,452 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-05-17T11:39:43,453 instead of `find_packages(...)`/`find:`). 2024-05-17T11:39:43,454 You can read more about "package discovery" on setuptools documentation page: 2024-05-17T11:39:43,454 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-05-17T11:39:43,455 If you don't want 'multiqc.modules.kat' to be distributed and are 2024-05-17T11:39:43,455 already explicitly excluding 'multiqc.modules.kat' via 2024-05-17T11:39:43,456 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-05-17T11:39:43,456 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-05-17T11:39:43,457 combination with a more fine grained `package-data` configuration. 2024-05-17T11:39:43,457 You can read more about "package data files" on setuptools documentation page: 2024-05-17T11:39:43,458 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-05-17T11:39:43,460 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-05-17T11:39:43,460 even if it does not contain any `.py` files. 2024-05-17T11:39:43,461 On the other hand, currently there is no concept of package data 2024-05-17T11:39:43,461 directory, all directories are treated like packages. 2024-05-17T11:39:43,462 ******************************************************************************** 2024-05-17T11:39:43,463 !! 2024-05-17T11:39:43,464 check.warn(importable) 2024-05-17T11:39:43,464 /tmp/pip-build-env-u8mgr1go/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'multiqc.modules.kraken' is absent from the `packages` configuration. 2024-05-17T11:39:43,465 !! 2024-05-17T11:39:43,466 ******************************************************************************** 2024-05-17T11:39:43,466 ############################ 2024-05-17T11:39:43,467 # Package would be ignored # 2024-05-17T11:39:43,468 ############################ 2024-05-17T11:39:43,468 Python recognizes 'multiqc.modules.kraken' as an importable package[^1], 2024-05-17T11:39:43,468 but it is absent from setuptools' `packages` configuration. 2024-05-17T11:39:43,469 This leads to an ambiguous overall configuration. If you want to distribute this 2024-05-17T11:39:43,470 package, please make sure that 'multiqc.modules.kraken' is explicitly added 2024-05-17T11:39:43,470 to the `packages` configuration field. 2024-05-17T11:39:43,471 Alternatively, you can also rely on setuptools' discovery methods 2024-05-17T11:39:43,472 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-05-17T11:39:43,472 instead of `find_packages(...)`/`find:`). 2024-05-17T11:39:43,473 You can read more about "package discovery" on setuptools documentation page: 2024-05-17T11:39:43,474 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-05-17T11:39:43,476 If you don't want 'multiqc.modules.kraken' to be distributed and are 2024-05-17T11:39:43,476 already explicitly excluding 'multiqc.modules.kraken' via 2024-05-17T11:39:43,477 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-05-17T11:39:43,477 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-05-17T11:39:43,478 combination with a more fine grained `package-data` configuration. 2024-05-17T11:39:43,478 You can read more about "package data files" on setuptools documentation page: 2024-05-17T11:39:43,479 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-05-17T11:39:43,481 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-05-17T11:39:43,481 even if it does not contain any `.py` files. 2024-05-17T11:39:43,482 On the other hand, currently there is no concept of package data 2024-05-17T11:39:43,482 directory, all directories are treated like packages. 2024-05-17T11:39:43,482 ******************************************************************************** 2024-05-17T11:39:43,483 !! 2024-05-17T11:39:43,483 check.warn(importable) 2024-05-17T11:39:43,484 /tmp/pip-build-env-u8mgr1go/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'multiqc.modules.leehom' is absent from the `packages` configuration. 2024-05-17T11:39:43,484 !! 2024-05-17T11:39:43,485 ******************************************************************************** 2024-05-17T11:39:43,485 ############################ 2024-05-17T11:39:43,486 # Package would be ignored # 2024-05-17T11:39:43,486 ############################ 2024-05-17T11:39:43,486 Python recognizes 'multiqc.modules.leehom' as an importable package[^1], 2024-05-17T11:39:43,487 but it is absent from setuptools' `packages` configuration. 2024-05-17T11:39:43,488 This leads to an ambiguous overall configuration. If you want to distribute this 2024-05-17T11:39:43,489 package, please make sure that 'multiqc.modules.leehom' is explicitly added 2024-05-17T11:39:43,489 to the `packages` configuration field. 2024-05-17T11:39:43,490 Alternatively, you can also rely on setuptools' discovery methods 2024-05-17T11:39:43,491 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-05-17T11:39:43,492 instead of `find_packages(...)`/`find:`). 2024-05-17T11:39:43,493 You can read more about "package discovery" on setuptools documentation page: 2024-05-17T11:39:43,494 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-05-17T11:39:43,495 If you don't want 'multiqc.modules.leehom' to be distributed and are 2024-05-17T11:39:43,495 already explicitly excluding 'multiqc.modules.leehom' via 2024-05-17T11:39:43,496 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-05-17T11:39:43,496 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-05-17T11:39:43,497 combination with a more fine grained `package-data` configuration. 2024-05-17T11:39:43,498 You can read more about "package data files" on setuptools documentation page: 2024-05-17T11:39:43,498 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-05-17T11:39:43,500 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-05-17T11:39:43,501 even if it does not contain any `.py` files. 2024-05-17T11:39:43,501 On the other hand, currently there is no concept of package data 2024-05-17T11:39:43,501 directory, all directories are treated like packages. 2024-05-17T11:39:43,502 ******************************************************************************** 2024-05-17T11:39:43,503 !! 2024-05-17T11:39:43,504 check.warn(importable) 2024-05-17T11:39:43,504 /tmp/pip-build-env-u8mgr1go/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'multiqc.modules.librarian' is absent from the `packages` configuration. 2024-05-17T11:39:43,505 !! 2024-05-17T11:39:43,506 ******************************************************************************** 2024-05-17T11:39:43,506 ############################ 2024-05-17T11:39:43,507 # Package would be ignored # 2024-05-17T11:39:43,507 ############################ 2024-05-17T11:39:43,507 Python recognizes 'multiqc.modules.librarian' as an importable package[^1], 2024-05-17T11:39:43,508 but it is absent from setuptools' `packages` configuration. 2024-05-17T11:39:43,508 This leads to an ambiguous overall configuration. If you want to distribute this 2024-05-17T11:39:43,509 package, please make sure that 'multiqc.modules.librarian' is explicitly added 2024-05-17T11:39:43,509 to the `packages` configuration field. 2024-05-17T11:39:43,510 Alternatively, you can also rely on setuptools' discovery methods 2024-05-17T11:39:43,510 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-05-17T11:39:43,511 instead of `find_packages(...)`/`find:`). 2024-05-17T11:39:43,511 You can read more about "package discovery" on setuptools documentation page: 2024-05-17T11:39:43,512 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-05-17T11:39:43,513 If you don't want 'multiqc.modules.librarian' to be distributed and are 2024-05-17T11:39:43,513 already explicitly excluding 'multiqc.modules.librarian' via 2024-05-17T11:39:43,514 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-05-17T11:39:43,514 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-05-17T11:39:43,515 combination with a more fine grained `package-data` configuration. 2024-05-17T11:39:43,516 You can read more about "package data files" on setuptools documentation page: 2024-05-17T11:39:43,517 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-05-17T11:39:43,519 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-05-17T11:39:43,519 even if it does not contain any `.py` files. 2024-05-17T11:39:43,520 On the other hand, currently there is no concept of package data 2024-05-17T11:39:43,520 directory, all directories are treated like packages. 2024-05-17T11:39:43,521 ******************************************************************************** 2024-05-17T11:39:43,522 !! 2024-05-17T11:39:43,523 check.warn(importable) 2024-05-17T11:39:43,523 /tmp/pip-build-env-u8mgr1go/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'multiqc.modules.lima' is absent from the `packages` configuration. 2024-05-17T11:39:43,524 !! 2024-05-17T11:39:43,525 ******************************************************************************** 2024-05-17T11:39:43,525 ############################ 2024-05-17T11:39:43,526 # Package would be ignored # 2024-05-17T11:39:43,526 ############################ 2024-05-17T11:39:43,526 Python recognizes 'multiqc.modules.lima' as an importable package[^1], 2024-05-17T11:39:43,527 but it is absent from setuptools' `packages` configuration. 2024-05-17T11:39:43,528 This leads to an ambiguous overall configuration. If you want to distribute this 2024-05-17T11:39:43,529 package, please make sure that 'multiqc.modules.lima' is explicitly added 2024-05-17T11:39:43,529 to the `packages` configuration field. 2024-05-17T11:39:43,530 Alternatively, you can also rely on setuptools' discovery methods 2024-05-17T11:39:43,531 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-05-17T11:39:43,531 instead of `find_packages(...)`/`find:`). 2024-05-17T11:39:43,533 You can read more about "package discovery" on setuptools documentation page: 2024-05-17T11:39:43,534 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-05-17T11:39:43,534 If you don't want 'multiqc.modules.lima' to be distributed and are 2024-05-17T11:39:43,535 already explicitly excluding 'multiqc.modules.lima' via 2024-05-17T11:39:43,535 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-05-17T11:39:43,536 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-05-17T11:39:43,536 combination with a more fine grained `package-data` configuration. 2024-05-17T11:39:43,537 You can read more about "package data files" on setuptools documentation page: 2024-05-17T11:39:43,537 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-05-17T11:39:43,538 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-05-17T11:39:43,539 even if it does not contain any `.py` files. 2024-05-17T11:39:43,539 On the other hand, currently there is no concept of package data 2024-05-17T11:39:43,540 directory, all directories are treated like packages. 2024-05-17T11:39:43,540 ******************************************************************************** 2024-05-17T11:39:43,541 !! 2024-05-17T11:39:43,541 check.warn(importable) 2024-05-17T11:39:43,541 /tmp/pip-build-env-u8mgr1go/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'multiqc.modules.longranger' is absent from the `packages` configuration. 2024-05-17T11:39:43,542 !! 2024-05-17T11:39:43,543 ******************************************************************************** 2024-05-17T11:39:43,543 ############################ 2024-05-17T11:39:43,544 # Package would be ignored # 2024-05-17T11:39:43,544 ############################ 2024-05-17T11:39:43,545 Python recognizes 'multiqc.modules.longranger' as an importable package[^1], 2024-05-17T11:39:43,546 but it is absent from setuptools' `packages` configuration. 2024-05-17T11:39:43,547 This leads to an ambiguous overall configuration. If you want to distribute this 2024-05-17T11:39:43,547 package, please make sure that 'multiqc.modules.longranger' is explicitly added 2024-05-17T11:39:43,548 to the `packages` configuration field. 2024-05-17T11:39:43,549 Alternatively, you can also rely on setuptools' discovery methods 2024-05-17T11:39:43,549 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-05-17T11:39:43,550 instead of `find_packages(...)`/`find:`). 2024-05-17T11:39:43,551 You can read more about "package discovery" on setuptools documentation page: 2024-05-17T11:39:43,552 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-05-17T11:39:43,553 If you don't want 'multiqc.modules.longranger' to be distributed and are 2024-05-17T11:39:43,554 already explicitly excluding 'multiqc.modules.longranger' via 2024-05-17T11:39:43,555 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-05-17T11:39:43,555 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-05-17T11:39:43,556 combination with a more fine grained `package-data` configuration. 2024-05-17T11:39:43,557 You can read more about "package data files" on setuptools documentation page: 2024-05-17T11:39:43,558 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-05-17T11:39:43,561 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-05-17T11:39:43,561 even if it does not contain any `.py` files. 2024-05-17T11:39:43,562 On the other hand, currently there is no concept of package data 2024-05-17T11:39:43,563 directory, all directories are treated like packages. 2024-05-17T11:39:43,564 ******************************************************************************** 2024-05-17T11:39:43,565 !! 2024-05-17T11:39:43,565 check.warn(importable) 2024-05-17T11:39:43,565 /tmp/pip-build-env-u8mgr1go/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'multiqc.modules.macs2' is absent from the `packages` configuration. 2024-05-17T11:39:43,566 !! 2024-05-17T11:39:43,566 ******************************************************************************** 2024-05-17T11:39:43,567 ############################ 2024-05-17T11:39:43,567 # Package would be ignored # 2024-05-17T11:39:43,568 ############################ 2024-05-17T11:39:43,568 Python recognizes 'multiqc.modules.macs2' as an importable package[^1], 2024-05-17T11:39:43,568 but it is absent from setuptools' `packages` configuration. 2024-05-17T11:39:43,569 This leads to an ambiguous overall configuration. If you want to distribute this 2024-05-17T11:39:43,569 package, please make sure that 'multiqc.modules.macs2' is explicitly added 2024-05-17T11:39:43,570 to the `packages` configuration field. 2024-05-17T11:39:43,570 Alternatively, you can also rely on setuptools' discovery methods 2024-05-17T11:39:43,571 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-05-17T11:39:43,571 instead of `find_packages(...)`/`find:`). 2024-05-17T11:39:43,572 You can read more about "package discovery" on setuptools documentation page: 2024-05-17T11:39:43,573 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-05-17T11:39:43,574 If you don't want 'multiqc.modules.macs2' to be distributed and are 2024-05-17T11:39:43,575 already explicitly excluding 'multiqc.modules.macs2' via 2024-05-17T11:39:43,575 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-05-17T11:39:43,576 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-05-17T11:39:43,577 combination with a more fine grained `package-data` configuration. 2024-05-17T11:39:43,578 You can read more about "package data files" on setuptools documentation page: 2024-05-17T11:39:43,579 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-05-17T11:39:43,581 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-05-17T11:39:43,581 even if it does not contain any `.py` files. 2024-05-17T11:39:43,582 On the other hand, currently there is no concept of package data 2024-05-17T11:39:43,583 directory, all directories are treated like packages. 2024-05-17T11:39:43,583 ******************************************************************************** 2024-05-17T11:39:43,584 !! 2024-05-17T11:39:43,585 check.warn(importable) 2024-05-17T11:39:43,585 /tmp/pip-build-env-u8mgr1go/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'multiqc.modules.malt' is absent from the `packages` configuration. 2024-05-17T11:39:43,586 !! 2024-05-17T11:39:43,586 ******************************************************************************** 2024-05-17T11:39:43,587 ############################ 2024-05-17T11:39:43,588 # Package would be ignored # 2024-05-17T11:39:43,588 ############################ 2024-05-17T11:39:43,589 Python recognizes 'multiqc.modules.malt' as an importable package[^1], 2024-05-17T11:39:43,589 but it is absent from setuptools' `packages` configuration. 2024-05-17T11:39:43,590 This leads to an ambiguous overall configuration. If you want to distribute this 2024-05-17T11:39:43,591 package, please make sure that 'multiqc.modules.malt' is explicitly added 2024-05-17T11:39:43,592 to the `packages` configuration field. 2024-05-17T11:39:43,592 Alternatively, you can also rely on setuptools' discovery methods 2024-05-17T11:39:43,593 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-05-17T11:39:43,593 instead of `find_packages(...)`/`find:`). 2024-05-17T11:39:43,594 You can read more about "package discovery" on setuptools documentation page: 2024-05-17T11:39:43,594 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-05-17T11:39:43,595 If you don't want 'multiqc.modules.malt' to be distributed and are 2024-05-17T11:39:43,595 already explicitly excluding 'multiqc.modules.malt' via 2024-05-17T11:39:43,596 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-05-17T11:39:43,596 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-05-17T11:39:43,597 combination with a more fine grained `package-data` configuration. 2024-05-17T11:39:43,597 You can read more about "package data files" on setuptools documentation page: 2024-05-17T11:39:43,598 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-05-17T11:39:43,599 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-05-17T11:39:43,600 even if it does not contain any `.py` files. 2024-05-17T11:39:43,600 On the other hand, currently there is no concept of package data 2024-05-17T11:39:43,600 directory, all directories are treated like packages. 2024-05-17T11:39:43,601 ******************************************************************************** 2024-05-17T11:39:43,602 !! 2024-05-17T11:39:43,602 check.warn(importable) 2024-05-17T11:39:43,603 /tmp/pip-build-env-u8mgr1go/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'multiqc.modules.mapdamage' is absent from the `packages` configuration. 2024-05-17T11:39:43,603 !! 2024-05-17T11:39:43,605 ******************************************************************************** 2024-05-17T11:39:43,605 ############################ 2024-05-17T11:39:43,606 # Package would be ignored # 2024-05-17T11:39:43,606 ############################ 2024-05-17T11:39:43,607 Python recognizes 'multiqc.modules.mapdamage' as an importable package[^1], 2024-05-17T11:39:43,607 but it is absent from setuptools' `packages` configuration. 2024-05-17T11:39:43,608 This leads to an ambiguous overall configuration. If you want to distribute this 2024-05-17T11:39:43,609 package, please make sure that 'multiqc.modules.mapdamage' is explicitly added 2024-05-17T11:39:43,609 to the `packages` configuration field. 2024-05-17T11:39:43,610 Alternatively, you can also rely on setuptools' discovery methods 2024-05-17T11:39:43,611 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-05-17T11:39:43,611 instead of `find_packages(...)`/`find:`). 2024-05-17T11:39:43,612 You can read more about "package discovery" on setuptools documentation page: 2024-05-17T11:39:43,613 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-05-17T11:39:43,614 If you don't want 'multiqc.modules.mapdamage' to be distributed and are 2024-05-17T11:39:43,615 already explicitly excluding 'multiqc.modules.mapdamage' via 2024-05-17T11:39:43,615 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-05-17T11:39:43,616 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-05-17T11:39:43,616 combination with a more fine grained `package-data` configuration. 2024-05-17T11:39:43,618 You can read more about "package data files" on setuptools documentation page: 2024-05-17T11:39:43,618 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-05-17T11:39:43,620 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-05-17T11:39:43,620 even if it does not contain any `.py` files. 2024-05-17T11:39:43,620 On the other hand, currently there is no concept of package data 2024-05-17T11:39:43,621 directory, all directories are treated like packages. 2024-05-17T11:39:43,621 ******************************************************************************** 2024-05-17T11:39:43,622 !! 2024-05-17T11:39:43,622 check.warn(importable) 2024-05-17T11:39:43,622 /tmp/pip-build-env-u8mgr1go/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'multiqc.modules.megahit' is absent from the `packages` configuration. 2024-05-17T11:39:43,623 !! 2024-05-17T11:39:43,623 ******************************************************************************** 2024-05-17T11:39:43,624 ############################ 2024-05-17T11:39:43,624 # Package would be ignored # 2024-05-17T11:39:43,624 ############################ 2024-05-17T11:39:43,625 Python recognizes 'multiqc.modules.megahit' as an importable package[^1], 2024-05-17T11:39:43,625 but it is absent from setuptools' `packages` configuration. 2024-05-17T11:39:43,626 This leads to an ambiguous overall configuration. If you want to distribute this 2024-05-17T11:39:43,626 package, please make sure that 'multiqc.modules.megahit' is explicitly added 2024-05-17T11:39:43,627 to the `packages` configuration field. 2024-05-17T11:39:43,628 Alternatively, you can also rely on setuptools' discovery methods 2024-05-17T11:39:43,629 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-05-17T11:39:43,629 instead of `find_packages(...)`/`find:`). 2024-05-17T11:39:43,630 You can read more about "package discovery" on setuptools documentation page: 2024-05-17T11:39:43,631 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-05-17T11:39:43,632 If you don't want 'multiqc.modules.megahit' to be distributed and are 2024-05-17T11:39:43,633 already explicitly excluding 'multiqc.modules.megahit' via 2024-05-17T11:39:43,634 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-05-17T11:39:43,634 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-05-17T11:39:43,635 combination with a more fine grained `package-data` configuration. 2024-05-17T11:39:43,637 You can read more about "package data files" on setuptools documentation page: 2024-05-17T11:39:43,637 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-05-17T11:39:43,639 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-05-17T11:39:43,639 even if it does not contain any `.py` files. 2024-05-17T11:39:43,640 On the other hand, currently there is no concept of package data 2024-05-17T11:39:43,640 directory, all directories are treated like packages. 2024-05-17T11:39:43,641 ******************************************************************************** 2024-05-17T11:39:43,642 !! 2024-05-17T11:39:43,642 check.warn(importable) 2024-05-17T11:39:43,643 /tmp/pip-build-env-u8mgr1go/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'multiqc.modules.metaphlan' is absent from the `packages` configuration. 2024-05-17T11:39:43,643 !! 2024-05-17T11:39:43,644 ******************************************************************************** 2024-05-17T11:39:43,645 ############################ 2024-05-17T11:39:43,646 # Package would be ignored # 2024-05-17T11:39:43,647 ############################ 2024-05-17T11:39:43,647 Python recognizes 'multiqc.modules.metaphlan' as an importable package[^1], 2024-05-17T11:39:43,648 but it is absent from setuptools' `packages` configuration. 2024-05-17T11:39:43,648 This leads to an ambiguous overall configuration. If you want to distribute this 2024-05-17T11:39:43,649 package, please make sure that 'multiqc.modules.metaphlan' is explicitly added 2024-05-17T11:39:43,649 to the `packages` configuration field. 2024-05-17T11:39:43,650 Alternatively, you can also rely on setuptools' discovery methods 2024-05-17T11:39:43,650 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-05-17T11:39:43,650 instead of `find_packages(...)`/`find:`). 2024-05-17T11:39:43,651 You can read more about "package discovery" on setuptools documentation page: 2024-05-17T11:39:43,652 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-05-17T11:39:43,652 If you don't want 'multiqc.modules.metaphlan' to be distributed and are 2024-05-17T11:39:43,653 already explicitly excluding 'multiqc.modules.metaphlan' via 2024-05-17T11:39:43,653 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-05-17T11:39:43,653 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-05-17T11:39:43,654 combination with a more fine grained `package-data` configuration. 2024-05-17T11:39:43,655 You can read more about "package data files" on setuptools documentation page: 2024-05-17T11:39:43,656 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-05-17T11:39:43,657 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-05-17T11:39:43,658 even if it does not contain any `.py` files. 2024-05-17T11:39:43,658 On the other hand, currently there is no concept of package data 2024-05-17T11:39:43,659 directory, all directories are treated like packages. 2024-05-17T11:39:43,660 ******************************************************************************** 2024-05-17T11:39:43,661 !! 2024-05-17T11:39:43,661 check.warn(importable) 2024-05-17T11:39:43,662 /tmp/pip-build-env-u8mgr1go/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'multiqc.modules.methylqa' is absent from the `packages` configuration. 2024-05-17T11:39:43,662 !! 2024-05-17T11:39:43,664 ******************************************************************************** 2024-05-17T11:39:43,664 ############################ 2024-05-17T11:39:43,665 # Package would be ignored # 2024-05-17T11:39:43,665 ############################ 2024-05-17T11:39:43,666 Python recognizes 'multiqc.modules.methylqa' as an importable package[^1], 2024-05-17T11:39:43,666 but it is absent from setuptools' `packages` configuration. 2024-05-17T11:39:43,667 This leads to an ambiguous overall configuration. If you want to distribute this 2024-05-17T11:39:43,668 package, please make sure that 'multiqc.modules.methylqa' is explicitly added 2024-05-17T11:39:43,668 to the `packages` configuration field. 2024-05-17T11:39:43,669 Alternatively, you can also rely on setuptools' discovery methods 2024-05-17T11:39:43,670 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-05-17T11:39:43,670 instead of `find_packages(...)`/`find:`). 2024-05-17T11:39:43,671 You can read more about "package discovery" on setuptools documentation page: 2024-05-17T11:39:43,673 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-05-17T11:39:43,674 If you don't want 'multiqc.modules.methylqa' to be distributed and are 2024-05-17T11:39:43,675 already explicitly excluding 'multiqc.modules.methylqa' via 2024-05-17T11:39:43,677 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-05-17T11:39:43,896 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-05-17T11:39:43,897 combination with a more fine grained `package-data` configuration. 2024-05-17T11:39:43,898 You can read more about "package data files" on setuptools documentation page: 2024-05-17T11:39:43,899 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-05-17T11:39:43,901 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-05-17T11:39:43,902 even if it does not contain any `.py` files. 2024-05-17T11:39:43,903 On the other hand, currently there is no concept of package data 2024-05-17T11:39:43,903 directory, all directories are treated like packages. 2024-05-17T11:39:43,904 ******************************************************************************** 2024-05-17T11:39:43,905 !! 2024-05-17T11:39:43,906 check.warn(importable) 2024-05-17T11:39:43,907 /tmp/pip-build-env-u8mgr1go/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'multiqc.modules.minionqc' is absent from the `packages` configuration. 2024-05-17T11:39:43,908 !! 2024-05-17T11:39:43,909 ******************************************************************************** 2024-05-17T11:39:43,910 ############################ 2024-05-17T11:39:43,910 # Package would be ignored # 2024-05-17T11:39:43,911 ############################ 2024-05-17T11:39:43,912 Python recognizes 'multiqc.modules.minionqc' as an importable package[^1], 2024-05-17T11:39:43,913 but it is absent from setuptools' `packages` configuration. 2024-05-17T11:39:43,916 This leads to an ambiguous overall configuration. If you want to distribute this 2024-05-17T11:39:43,917 package, please make sure that 'multiqc.modules.minionqc' is explicitly added 2024-05-17T11:39:43,918 to the `packages` configuration field. 2024-05-17T11:39:43,919 Alternatively, you can also rely on setuptools' discovery methods 2024-05-17T11:39:43,920 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-05-17T11:39:43,921 instead of `find_packages(...)`/`find:`). 2024-05-17T11:39:43,923 You can read more about "package discovery" on setuptools documentation page: 2024-05-17T11:39:43,924 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-05-17T11:39:43,926 If you don't want 'multiqc.modules.minionqc' to be distributed and are 2024-05-17T11:39:43,927 already explicitly excluding 'multiqc.modules.minionqc' via 2024-05-17T11:39:43,928 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-05-17T11:39:43,929 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-05-17T11:39:43,930 combination with a more fine grained `package-data` configuration. 2024-05-17T11:39:43,931 You can read more about "package data files" on setuptools documentation page: 2024-05-17T11:39:43,933 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-05-17T11:39:43,935 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-05-17T11:39:43,936 even if it does not contain any `.py` files. 2024-05-17T11:39:43,936 On the other hand, currently there is no concept of package data 2024-05-17T11:39:43,937 directory, all directories are treated like packages. 2024-05-17T11:39:43,938 ******************************************************************************** 2024-05-17T11:39:43,940 !! 2024-05-17T11:39:43,940 check.warn(importable) 2024-05-17T11:39:43,942 /tmp/pip-build-env-u8mgr1go/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'multiqc.modules.mirtop' is absent from the `packages` configuration. 2024-05-17T11:39:43,943 !! 2024-05-17T11:39:43,945 ******************************************************************************** 2024-05-17T11:39:43,946 ############################ 2024-05-17T11:39:43,946 # Package would be ignored # 2024-05-17T11:39:43,947 ############################ 2024-05-17T11:39:43,947 Python recognizes 'multiqc.modules.mirtop' as an importable package[^1], 2024-05-17T11:39:43,948 but it is absent from setuptools' `packages` configuration. 2024-05-17T11:39:43,949 This leads to an ambiguous overall configuration. If you want to distribute this 2024-05-17T11:39:43,949 package, please make sure that 'multiqc.modules.mirtop' is explicitly added 2024-05-17T11:39:43,950 to the `packages` configuration field. 2024-05-17T11:39:43,951 Alternatively, you can also rely on setuptools' discovery methods 2024-05-17T11:39:43,952 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-05-17T11:39:43,952 instead of `find_packages(...)`/`find:`). 2024-05-17T11:39:43,954 You can read more about "package discovery" on setuptools documentation page: 2024-05-17T11:39:43,955 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-05-17T11:39:43,957 If you don't want 'multiqc.modules.mirtop' to be distributed and are 2024-05-17T11:39:43,958 already explicitly excluding 'multiqc.modules.mirtop' via 2024-05-17T11:39:43,959 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-05-17T11:39:43,960 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-05-17T11:39:43,961 combination with a more fine grained `package-data` configuration. 2024-05-17T11:39:43,963 You can read more about "package data files" on setuptools documentation page: 2024-05-17T11:39:43,964 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-05-17T11:39:43,967 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-05-17T11:39:43,968 even if it does not contain any `.py` files. 2024-05-17T11:39:43,968 On the other hand, currently there is no concept of package data 2024-05-17T11:39:43,969 directory, all directories are treated like packages. 2024-05-17T11:39:43,970 ******************************************************************************** 2024-05-17T11:39:43,972 !! 2024-05-17T11:39:43,972 check.warn(importable) 2024-05-17T11:39:43,973 /tmp/pip-build-env-u8mgr1go/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'multiqc.modules.mirtrace' is absent from the `packages` configuration. 2024-05-17T11:39:43,974 !! 2024-05-17T11:39:43,975 ******************************************************************************** 2024-05-17T11:39:43,976 ############################ 2024-05-17T11:39:43,977 # Package would be ignored # 2024-05-17T11:39:43,978 ############################ 2024-05-17T11:39:43,979 Python recognizes 'multiqc.modules.mirtrace' as an importable package[^1], 2024-05-17T11:39:43,979 but it is absent from setuptools' `packages` configuration. 2024-05-17T11:39:43,981 This leads to an ambiguous overall configuration. If you want to distribute this 2024-05-17T11:39:43,982 package, please make sure that 'multiqc.modules.mirtrace' is explicitly added 2024-05-17T11:39:43,982 to the `packages` configuration field. 2024-05-17T11:39:43,984 Alternatively, you can also rely on setuptools' discovery methods 2024-05-17T11:39:43,985 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-05-17T11:39:43,986 instead of `find_packages(...)`/`find:`). 2024-05-17T11:39:43,987 You can read more about "package discovery" on setuptools documentation page: 2024-05-17T11:39:43,988 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-05-17T11:39:43,989 If you don't want 'multiqc.modules.mirtrace' to be distributed and are 2024-05-17T11:39:43,990 already explicitly excluding 'multiqc.modules.mirtrace' via 2024-05-17T11:39:43,991 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-05-17T11:39:43,991 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-05-17T11:39:43,992 combination with a more fine grained `package-data` configuration. 2024-05-17T11:39:43,993 You can read more about "package data files" on setuptools documentation page: 2024-05-17T11:39:43,994 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-05-17T11:39:43,996 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-05-17T11:39:43,996 even if it does not contain any `.py` files. 2024-05-17T11:39:43,997 On the other hand, currently there is no concept of package data 2024-05-17T11:39:43,998 directory, all directories are treated like packages. 2024-05-17T11:39:43,999 ******************************************************************************** 2024-05-17T11:39:44,002 !! 2024-05-17T11:39:44,003 check.warn(importable) 2024-05-17T11:39:44,004 /tmp/pip-build-env-u8mgr1go/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'multiqc.modules.mosdepth' is absent from the `packages` configuration. 2024-05-17T11:39:44,005 !! 2024-05-17T11:39:44,007 ******************************************************************************** 2024-05-17T11:39:44,008 ############################ 2024-05-17T11:39:44,009 # Package would be ignored # 2024-05-17T11:39:44,010 ############################ 2024-05-17T11:39:44,011 Python recognizes 'multiqc.modules.mosdepth' as an importable package[^1], 2024-05-17T11:39:44,012 but it is absent from setuptools' `packages` configuration. 2024-05-17T11:39:44,014 This leads to an ambiguous overall configuration. If you want to distribute this 2024-05-17T11:39:44,015 package, please make sure that 'multiqc.modules.mosdepth' is explicitly added 2024-05-17T11:39:44,016 to the `packages` configuration field. 2024-05-17T11:39:44,017 Alternatively, you can also rely on setuptools' discovery methods 2024-05-17T11:39:44,018 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-05-17T11:39:44,019 instead of `find_packages(...)`/`find:`). 2024-05-17T11:39:44,020 You can read more about "package discovery" on setuptools documentation page: 2024-05-17T11:39:44,022 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-05-17T11:39:44,024 If you don't want 'multiqc.modules.mosdepth' to be distributed and are 2024-05-17T11:39:44,025 already explicitly excluding 'multiqc.modules.mosdepth' via 2024-05-17T11:39:44,026 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-05-17T11:39:44,027 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-05-17T11:39:44,028 combination with a more fine grained `package-data` configuration. 2024-05-17T11:39:44,030 You can read more about "package data files" on setuptools documentation page: 2024-05-17T11:39:44,032 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-05-17T11:39:44,034 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-05-17T11:39:44,034 even if it does not contain any `.py` files. 2024-05-17T11:39:44,035 On the other hand, currently there is no concept of package data 2024-05-17T11:39:44,036 directory, all directories are treated like packages. 2024-05-17T11:39:44,036 ******************************************************************************** 2024-05-17T11:39:44,037 !! 2024-05-17T11:39:44,037 check.warn(importable) 2024-05-17T11:39:44,038 /tmp/pip-build-env-u8mgr1go/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'multiqc.modules.motus' is absent from the `packages` configuration. 2024-05-17T11:39:44,038 !! 2024-05-17T11:39:44,039 ******************************************************************************** 2024-05-17T11:39:44,040 ############################ 2024-05-17T11:39:44,040 # Package would be ignored # 2024-05-17T11:39:44,041 ############################ 2024-05-17T11:39:44,042 Python recognizes 'multiqc.modules.motus' as an importable package[^1], 2024-05-17T11:39:44,043 but it is absent from setuptools' `packages` configuration. 2024-05-17T11:39:44,045 This leads to an ambiguous overall configuration. If you want to distribute this 2024-05-17T11:39:44,046 package, please make sure that 'multiqc.modules.motus' is explicitly added 2024-05-17T11:39:44,047 to the `packages` configuration field. 2024-05-17T11:39:44,048 Alternatively, you can also rely on setuptools' discovery methods 2024-05-17T11:39:44,049 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-05-17T11:39:44,049 instead of `find_packages(...)`/`find:`). 2024-05-17T11:39:44,050 You can read more about "package discovery" on setuptools documentation page: 2024-05-17T11:39:44,052 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-05-17T11:39:44,053 If you don't want 'multiqc.modules.motus' to be distributed and are 2024-05-17T11:39:44,053 already explicitly excluding 'multiqc.modules.motus' via 2024-05-17T11:39:44,054 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-05-17T11:39:44,055 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-05-17T11:39:44,055 combination with a more fine grained `package-data` configuration. 2024-05-17T11:39:44,057 You can read more about "package data files" on setuptools documentation page: 2024-05-17T11:39:44,058 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-05-17T11:39:44,060 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-05-17T11:39:44,061 even if it does not contain any `.py` files. 2024-05-17T11:39:44,061 On the other hand, currently there is no concept of package data 2024-05-17T11:39:44,062 directory, all directories are treated like packages. 2024-05-17T11:39:44,098 ******************************************************************************** 2024-05-17T11:39:44,100 !! 2024-05-17T11:39:44,100 check.warn(importable) 2024-05-17T11:39:44,101 /tmp/pip-build-env-u8mgr1go/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'multiqc.modules.mtnucratio' is absent from the `packages` configuration. 2024-05-17T11:39:44,102 !! 2024-05-17T11:39:44,103 ******************************************************************************** 2024-05-17T11:39:44,104 ############################ 2024-05-17T11:39:44,105 # Package would be ignored # 2024-05-17T11:39:44,106 ############################ 2024-05-17T11:39:44,107 Python recognizes 'multiqc.modules.mtnucratio' as an importable package[^1], 2024-05-17T11:39:44,108 but it is absent from setuptools' `packages` configuration. 2024-05-17T11:39:44,110 This leads to an ambiguous overall configuration. If you want to distribute this 2024-05-17T11:39:44,111 package, please make sure that 'multiqc.modules.mtnucratio' is explicitly added 2024-05-17T11:39:44,111 to the `packages` configuration field. 2024-05-17T11:39:44,112 Alternatively, you can also rely on setuptools' discovery methods 2024-05-17T11:39:44,113 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-05-17T11:39:44,113 instead of `find_packages(...)`/`find:`). 2024-05-17T11:39:44,115 You can read more about "package discovery" on setuptools documentation page: 2024-05-17T11:39:44,118 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-05-17T11:39:44,119 If you don't want 'multiqc.modules.mtnucratio' to be distributed and are 2024-05-17T11:39:44,120 already explicitly excluding 'multiqc.modules.mtnucratio' via 2024-05-17T11:39:44,121 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-05-17T11:39:44,122 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-05-17T11:39:44,123 combination with a more fine grained `package-data` configuration. 2024-05-17T11:39:44,124 You can read more about "package data files" on setuptools documentation page: 2024-05-17T11:39:44,126 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-05-17T11:39:44,129 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-05-17T11:39:44,129 even if it does not contain any `.py` files. 2024-05-17T11:39:44,130 On the other hand, currently there is no concept of package data 2024-05-17T11:39:44,131 directory, all directories are treated like packages. 2024-05-17T11:39:44,131 ******************************************************************************** 2024-05-17T11:39:44,133 !! 2024-05-17T11:39:44,134 check.warn(importable) 2024-05-17T11:39:44,134 /tmp/pip-build-env-u8mgr1go/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'multiqc.modules.multivcfanalyzer' is absent from the `packages` configuration. 2024-05-17T11:39:44,135 !! 2024-05-17T11:39:44,137 ******************************************************************************** 2024-05-17T11:39:44,138 ############################ 2024-05-17T11:39:44,138 # Package would be ignored # 2024-05-17T11:39:44,139 ############################ 2024-05-17T11:39:44,140 Python recognizes 'multiqc.modules.multivcfanalyzer' as an importable package[^1], 2024-05-17T11:39:44,141 but it is absent from setuptools' `packages` configuration. 2024-05-17T11:39:44,142 This leads to an ambiguous overall configuration. If you want to distribute this 2024-05-17T11:39:44,143 package, please make sure that 'multiqc.modules.multivcfanalyzer' is explicitly added 2024-05-17T11:39:44,143 to the `packages` configuration field. 2024-05-17T11:39:44,145 Alternatively, you can also rely on setuptools' discovery methods 2024-05-17T11:39:44,146 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-05-17T11:39:44,146 instead of `find_packages(...)`/`find:`). 2024-05-17T11:39:44,148 You can read more about "package discovery" on setuptools documentation page: 2024-05-17T11:39:44,149 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-05-17T11:39:44,151 If you don't want 'multiqc.modules.multivcfanalyzer' to be distributed and are 2024-05-17T11:39:44,152 already explicitly excluding 'multiqc.modules.multivcfanalyzer' via 2024-05-17T11:39:44,153 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-05-17T11:39:44,154 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-05-17T11:39:44,155 combination with a more fine grained `package-data` configuration. 2024-05-17T11:39:44,156 You can read more about "package data files" on setuptools documentation page: 2024-05-17T11:39:44,157 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-05-17T11:39:44,159 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-05-17T11:39:44,160 even if it does not contain any `.py` files. 2024-05-17T11:39:44,160 On the other hand, currently there is no concept of package data 2024-05-17T11:39:44,161 directory, all directories are treated like packages. 2024-05-17T11:39:44,161 ******************************************************************************** 2024-05-17T11:39:44,163 !! 2024-05-17T11:39:44,163 check.warn(importable) 2024-05-17T11:39:44,164 /tmp/pip-build-env-u8mgr1go/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'multiqc.modules.nanostat' is absent from the `packages` configuration. 2024-05-17T11:39:44,164 !! 2024-05-17T11:39:44,166 ******************************************************************************** 2024-05-17T11:39:44,166 ############################ 2024-05-17T11:39:44,167 # Package would be ignored # 2024-05-17T11:39:44,167 ############################ 2024-05-17T11:39:44,168 Python recognizes 'multiqc.modules.nanostat' as an importable package[^1], 2024-05-17T11:39:44,169 but it is absent from setuptools' `packages` configuration. 2024-05-17T11:39:44,170 This leads to an ambiguous overall configuration. If you want to distribute this 2024-05-17T11:39:44,171 package, please make sure that 'multiqc.modules.nanostat' is explicitly added 2024-05-17T11:39:44,172 to the `packages` configuration field. 2024-05-17T11:39:44,173 Alternatively, you can also rely on setuptools' discovery methods 2024-05-17T11:39:44,174 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-05-17T11:39:44,175 instead of `find_packages(...)`/`find:`). 2024-05-17T11:39:44,176 You can read more about "package discovery" on setuptools documentation page: 2024-05-17T11:39:44,178 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-05-17T11:39:44,179 If you don't want 'multiqc.modules.nanostat' to be distributed and are 2024-05-17T11:39:44,180 already explicitly excluding 'multiqc.modules.nanostat' via 2024-05-17T11:39:44,181 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-05-17T11:39:44,181 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-05-17T11:39:44,182 combination with a more fine grained `package-data` configuration. 2024-05-17T11:39:44,183 You can read more about "package data files" on setuptools documentation page: 2024-05-17T11:39:44,185 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-05-17T11:39:44,187 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-05-17T11:39:44,188 even if it does not contain any `.py` files. 2024-05-17T11:39:44,188 On the other hand, currently there is no concept of package data 2024-05-17T11:39:44,189 directory, all directories are treated like packages. 2024-05-17T11:39:44,190 ******************************************************************************** 2024-05-17T11:39:44,191 !! 2024-05-17T11:39:44,192 check.warn(importable) 2024-05-17T11:39:44,193 /tmp/pip-build-env-u8mgr1go/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'multiqc.modules.nextclade' is absent from the `packages` configuration. 2024-05-17T11:39:44,194 !! 2024-05-17T11:39:44,196 ******************************************************************************** 2024-05-17T11:39:44,197 ############################ 2024-05-17T11:39:44,197 # Package would be ignored # 2024-05-17T11:39:44,198 ############################ 2024-05-17T11:39:44,199 Python recognizes 'multiqc.modules.nextclade' as an importable package[^1], 2024-05-17T11:39:44,199 but it is absent from setuptools' `packages` configuration. 2024-05-17T11:39:44,201 This leads to an ambiguous overall configuration. If you want to distribute this 2024-05-17T11:39:44,201 package, please make sure that 'multiqc.modules.nextclade' is explicitly added 2024-05-17T11:39:44,202 to the `packages` configuration field. 2024-05-17T11:39:44,203 Alternatively, you can also rely on setuptools' discovery methods 2024-05-17T11:39:44,204 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-05-17T11:39:44,204 instead of `find_packages(...)`/`find:`). 2024-05-17T11:39:44,205 You can read more about "package discovery" on setuptools documentation page: 2024-05-17T11:39:44,207 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-05-17T11:39:44,208 If you don't want 'multiqc.modules.nextclade' to be distributed and are 2024-05-17T11:39:44,208 already explicitly excluding 'multiqc.modules.nextclade' via 2024-05-17T11:39:44,209 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-05-17T11:39:44,209 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-05-17T11:39:44,210 combination with a more fine grained `package-data` configuration. 2024-05-17T11:39:44,212 You can read more about "package data files" on setuptools documentation page: 2024-05-17T11:39:44,213 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-05-17T11:39:44,215 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-05-17T11:39:44,216 even if it does not contain any `.py` files. 2024-05-17T11:39:44,217 On the other hand, currently there is no concept of package data 2024-05-17T11:39:44,217 directory, all directories are treated like packages. 2024-05-17T11:39:44,218 ******************************************************************************** 2024-05-17T11:39:44,220 !! 2024-05-17T11:39:44,220 check.warn(importable) 2024-05-17T11:39:44,221 /tmp/pip-build-env-u8mgr1go/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'multiqc.modules.ngsderive' is absent from the `packages` configuration. 2024-05-17T11:39:44,222 !! 2024-05-17T11:39:44,223 ******************************************************************************** 2024-05-17T11:39:44,224 ############################ 2024-05-17T11:39:44,225 # Package would be ignored # 2024-05-17T11:39:44,225 ############################ 2024-05-17T11:39:44,226 Python recognizes 'multiqc.modules.ngsderive' as an importable package[^1], 2024-05-17T11:39:44,227 but it is absent from setuptools' `packages` configuration. 2024-05-17T11:39:44,228 This leads to an ambiguous overall configuration. If you want to distribute this 2024-05-17T11:39:44,229 package, please make sure that 'multiqc.modules.ngsderive' is explicitly added 2024-05-17T11:39:44,230 to the `packages` configuration field. 2024-05-17T11:39:44,231 Alternatively, you can also rely on setuptools' discovery methods 2024-05-17T11:39:44,232 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-05-17T11:39:44,232 instead of `find_packages(...)`/`find:`). 2024-05-17T11:39:44,233 You can read more about "package discovery" on setuptools documentation page: 2024-05-17T11:39:44,235 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-05-17T11:39:44,236 If you don't want 'multiqc.modules.ngsderive' to be distributed and are 2024-05-17T11:39:44,236 already explicitly excluding 'multiqc.modules.ngsderive' via 2024-05-17T11:39:44,236 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-05-17T11:39:44,237 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-05-17T11:39:44,237 combination with a more fine grained `package-data` configuration. 2024-05-17T11:39:44,238 You can read more about "package data files" on setuptools documentation page: 2024-05-17T11:39:44,239 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-05-17T11:39:44,240 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-05-17T11:39:44,240 even if it does not contain any `.py` files. 2024-05-17T11:39:44,240 On the other hand, currently there is no concept of package data 2024-05-17T11:39:44,241 directory, all directories are treated like packages. 2024-05-17T11:39:44,241 ******************************************************************************** 2024-05-17T11:39:44,242 !! 2024-05-17T11:39:44,242 check.warn(importable) 2024-05-17T11:39:44,243 /tmp/pip-build-env-u8mgr1go/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'multiqc.modules.nonpareil' is absent from the `packages` configuration. 2024-05-17T11:39:44,243 !! 2024-05-17T11:39:44,244 ******************************************************************************** 2024-05-17T11:39:44,245 ############################ 2024-05-17T11:39:44,245 # Package would be ignored # 2024-05-17T11:39:44,246 ############################ 2024-05-17T11:39:44,246 Python recognizes 'multiqc.modules.nonpareil' as an importable package[^1], 2024-05-17T11:39:44,247 but it is absent from setuptools' `packages` configuration. 2024-05-17T11:39:44,248 This leads to an ambiguous overall configuration. If you want to distribute this 2024-05-17T11:39:44,249 package, please make sure that 'multiqc.modules.nonpareil' is explicitly added 2024-05-17T11:39:44,249 to the `packages` configuration field. 2024-05-17T11:39:44,251 Alternatively, you can also rely on setuptools' discovery methods 2024-05-17T11:39:44,251 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-05-17T11:39:44,252 instead of `find_packages(...)`/`find:`). 2024-05-17T11:39:44,253 You can read more about "package discovery" on setuptools documentation page: 2024-05-17T11:39:44,254 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-05-17T11:39:44,255 If you don't want 'multiqc.modules.nonpareil' to be distributed and are 2024-05-17T11:39:44,255 already explicitly excluding 'multiqc.modules.nonpareil' via 2024-05-17T11:39:44,256 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-05-17T11:39:44,256 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-05-17T11:39:44,257 combination with a more fine grained `package-data` configuration. 2024-05-17T11:39:44,258 You can read more about "package data files" on setuptools documentation page: 2024-05-17T11:39:44,259 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-05-17T11:39:44,261 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-05-17T11:39:44,262 even if it does not contain any `.py` files. 2024-05-17T11:39:44,262 On the other hand, currently there is no concept of package data 2024-05-17T11:39:44,263 directory, all directories are treated like packages. 2024-05-17T11:39:44,264 ******************************************************************************** 2024-05-17T11:39:44,265 !! 2024-05-17T11:39:44,265 check.warn(importable) 2024-05-17T11:39:44,265 /tmp/pip-build-env-u8mgr1go/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'multiqc.modules.odgi' is absent from the `packages` configuration. 2024-05-17T11:39:44,266 !! 2024-05-17T11:39:44,266 ******************************************************************************** 2024-05-17T11:39:44,267 ############################ 2024-05-17T11:39:44,267 # Package would be ignored # 2024-05-17T11:39:44,267 ############################ 2024-05-17T11:39:44,268 Python recognizes 'multiqc.modules.odgi' as an importable package[^1], 2024-05-17T11:39:44,268 but it is absent from setuptools' `packages` configuration. 2024-05-17T11:39:44,269 This leads to an ambiguous overall configuration. If you want to distribute this 2024-05-17T11:39:44,269 package, please make sure that 'multiqc.modules.odgi' is explicitly added 2024-05-17T11:39:44,270 to the `packages` configuration field. 2024-05-17T11:39:44,270 Alternatively, you can also rely on setuptools' discovery methods 2024-05-17T11:39:44,271 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-05-17T11:39:44,271 instead of `find_packages(...)`/`find:`). 2024-05-17T11:39:44,272 You can read more about "package discovery" on setuptools documentation page: 2024-05-17T11:39:44,273 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-05-17T11:39:44,274 If you don't want 'multiqc.modules.odgi' to be distributed and are 2024-05-17T11:39:44,275 already explicitly excluding 'multiqc.modules.odgi' via 2024-05-17T11:39:44,275 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-05-17T11:39:44,276 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-05-17T11:39:44,276 combination with a more fine grained `package-data` configuration. 2024-05-17T11:39:44,278 You can read more about "package data files" on setuptools documentation page: 2024-05-17T11:39:44,278 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-05-17T11:39:44,280 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-05-17T11:39:44,281 even if it does not contain any `.py` files. 2024-05-17T11:39:44,281 On the other hand, currently there is no concept of package data 2024-05-17T11:39:44,282 directory, all directories are treated like packages. 2024-05-17T11:39:44,282 ******************************************************************************** 2024-05-17T11:39:44,283 !! 2024-05-17T11:39:44,284 check.warn(importable) 2024-05-17T11:39:44,284 /tmp/pip-build-env-u8mgr1go/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'multiqc.modules.optitype' is absent from the `packages` configuration. 2024-05-17T11:39:44,285 !! 2024-05-17T11:39:44,286 ******************************************************************************** 2024-05-17T11:39:44,286 ############################ 2024-05-17T11:39:44,286 # Package would be ignored # 2024-05-17T11:39:44,287 ############################ 2024-05-17T11:39:44,288 Python recognizes 'multiqc.modules.optitype' as an importable package[^1], 2024-05-17T11:39:44,288 but it is absent from setuptools' `packages` configuration. 2024-05-17T11:39:44,289 This leads to an ambiguous overall configuration. If you want to distribute this 2024-05-17T11:39:44,290 package, please make sure that 'multiqc.modules.optitype' is explicitly added 2024-05-17T11:39:44,290 to the `packages` configuration field. 2024-05-17T11:39:44,292 Alternatively, you can also rely on setuptools' discovery methods 2024-05-17T11:39:44,292 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-05-17T11:39:44,292 instead of `find_packages(...)`/`find:`). 2024-05-17T11:39:44,293 You can read more about "package discovery" on setuptools documentation page: 2024-05-17T11:39:44,294 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-05-17T11:39:44,294 If you don't want 'multiqc.modules.optitype' to be distributed and are 2024-05-17T11:39:44,295 already explicitly excluding 'multiqc.modules.optitype' via 2024-05-17T11:39:44,295 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-05-17T11:39:44,295 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-05-17T11:39:44,296 combination with a more fine grained `package-data` configuration. 2024-05-17T11:39:44,297 You can read more about "package data files" on setuptools documentation page: 2024-05-17T11:39:44,297 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-05-17T11:39:44,298 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-05-17T11:39:44,299 even if it does not contain any `.py` files. 2024-05-17T11:39:44,299 On the other hand, currently there is no concept of package data 2024-05-17T11:39:44,299 directory, all directories are treated like packages. 2024-05-17T11:39:44,300 ******************************************************************************** 2024-05-17T11:39:44,301 !! 2024-05-17T11:39:44,301 check.warn(importable) 2024-05-17T11:39:44,302 /tmp/pip-build-env-u8mgr1go/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'multiqc.modules.pangolin' is absent from the `packages` configuration. 2024-05-17T11:39:44,303 !! 2024-05-17T11:39:44,304 ******************************************************************************** 2024-05-17T11:39:44,305 ############################ 2024-05-17T11:39:44,306 # Package would be ignored # 2024-05-17T11:39:44,306 ############################ 2024-05-17T11:39:44,307 Python recognizes 'multiqc.modules.pangolin' as an importable package[^1], 2024-05-17T11:39:44,308 but it is absent from setuptools' `packages` configuration. 2024-05-17T11:39:44,310 This leads to an ambiguous overall configuration. If you want to distribute this 2024-05-17T11:39:44,310 package, please make sure that 'multiqc.modules.pangolin' is explicitly added 2024-05-17T11:39:44,311 to the `packages` configuration field. 2024-05-17T11:39:44,313 Alternatively, you can also rely on setuptools' discovery methods 2024-05-17T11:39:44,313 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-05-17T11:39:44,314 instead of `find_packages(...)`/`find:`). 2024-05-17T11:39:44,315 You can read more about "package discovery" on setuptools documentation page: 2024-05-17T11:39:44,317 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-05-17T11:39:44,318 If you don't want 'multiqc.modules.pangolin' to be distributed and are 2024-05-17T11:39:44,319 already explicitly excluding 'multiqc.modules.pangolin' via 2024-05-17T11:39:44,320 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-05-17T11:39:44,321 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-05-17T11:39:44,322 combination with a more fine grained `package-data` configuration. 2024-05-17T11:39:44,324 You can read more about "package data files" on setuptools documentation page: 2024-05-17T11:39:44,325 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-05-17T11:39:44,326 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-05-17T11:39:44,327 even if it does not contain any `.py` files. 2024-05-17T11:39:44,327 On the other hand, currently there is no concept of package data 2024-05-17T11:39:44,327 directory, all directories are treated like packages. 2024-05-17T11:39:44,328 ******************************************************************************** 2024-05-17T11:39:44,328 !! 2024-05-17T11:39:44,329 check.warn(importable) 2024-05-17T11:39:44,329 /tmp/pip-build-env-u8mgr1go/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'multiqc.modules.pbmarkdup' is absent from the `packages` configuration. 2024-05-17T11:39:44,329 !! 2024-05-17T11:39:44,330 ******************************************************************************** 2024-05-17T11:39:44,330 ############################ 2024-05-17T11:39:44,331 # Package would be ignored # 2024-05-17T11:39:44,331 ############################ 2024-05-17T11:39:44,332 Python recognizes 'multiqc.modules.pbmarkdup' as an importable package[^1], 2024-05-17T11:39:44,332 but it is absent from setuptools' `packages` configuration. 2024-05-17T11:39:44,333 This leads to an ambiguous overall configuration. If you want to distribute this 2024-05-17T11:39:44,333 package, please make sure that 'multiqc.modules.pbmarkdup' is explicitly added 2024-05-17T11:39:44,333 to the `packages` configuration field. 2024-05-17T11:39:44,335 Alternatively, you can also rely on setuptools' discovery methods 2024-05-17T11:39:44,335 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-05-17T11:39:44,336 instead of `find_packages(...)`/`find:`). 2024-05-17T11:39:44,337 You can read more about "package discovery" on setuptools documentation page: 2024-05-17T11:39:44,338 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-05-17T11:39:44,339 If you don't want 'multiqc.modules.pbmarkdup' to be distributed and are 2024-05-17T11:39:44,340 already explicitly excluding 'multiqc.modules.pbmarkdup' via 2024-05-17T11:39:44,341 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-05-17T11:39:44,341 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-05-17T11:39:44,342 combination with a more fine grained `package-data` configuration. 2024-05-17T11:39:44,343 You can read more about "package data files" on setuptools documentation page: 2024-05-17T11:39:44,344 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-05-17T11:39:44,345 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-05-17T11:39:44,346 even if it does not contain any `.py` files. 2024-05-17T11:39:44,346 On the other hand, currently there is no concept of package data 2024-05-17T11:39:44,347 directory, all directories are treated like packages. 2024-05-17T11:39:44,347 ******************************************************************************** 2024-05-17T11:39:44,348 !! 2024-05-17T11:39:44,349 check.warn(importable) 2024-05-17T11:39:44,349 /tmp/pip-build-env-u8mgr1go/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'multiqc.modules.peddy' is absent from the `packages` configuration. 2024-05-17T11:39:44,350 !! 2024-05-17T11:39:44,351 ******************************************************************************** 2024-05-17T11:39:44,351 ############################ 2024-05-17T11:39:44,352 # Package would be ignored # 2024-05-17T11:39:44,352 ############################ 2024-05-17T11:39:44,353 Python recognizes 'multiqc.modules.peddy' as an importable package[^1], 2024-05-17T11:39:44,354 but it is absent from setuptools' `packages` configuration. 2024-05-17T11:39:44,355 This leads to an ambiguous overall configuration. If you want to distribute this 2024-05-17T11:39:44,355 package, please make sure that 'multiqc.modules.peddy' is explicitly added 2024-05-17T11:39:44,356 to the `packages` configuration field. 2024-05-17T11:39:44,356 Alternatively, you can also rely on setuptools' discovery methods 2024-05-17T11:39:44,357 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-05-17T11:39:44,357 instead of `find_packages(...)`/`find:`). 2024-05-17T11:39:44,358 You can read more about "package discovery" on setuptools documentation page: 2024-05-17T11:39:44,359 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-05-17T11:39:44,359 If you don't want 'multiqc.modules.peddy' to be distributed and are 2024-05-17T11:39:44,360 already explicitly excluding 'multiqc.modules.peddy' via 2024-05-17T11:39:44,360 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-05-17T11:39:44,361 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-05-17T11:39:44,361 combination with a more fine grained `package-data` configuration. 2024-05-17T11:39:44,362 You can read more about "package data files" on setuptools documentation page: 2024-05-17T11:39:44,363 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-05-17T11:39:44,364 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-05-17T11:39:44,365 even if it does not contain any `.py` files. 2024-05-17T11:39:44,365 On the other hand, currently there is no concept of package data 2024-05-17T11:39:44,366 directory, all directories are treated like packages. 2024-05-17T11:39:44,366 ******************************************************************************** 2024-05-17T11:39:44,368 !! 2024-05-17T11:39:44,368 check.warn(importable) 2024-05-17T11:39:44,369 /tmp/pip-build-env-u8mgr1go/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'multiqc.modules.phantompeakqualtools' is absent from the `packages` configuration. 2024-05-17T11:39:44,369 !! 2024-05-17T11:39:44,370 ******************************************************************************** 2024-05-17T11:39:44,371 ############################ 2024-05-17T11:39:44,372 # Package would be ignored # 2024-05-17T11:39:44,372 ############################ 2024-05-17T11:39:44,373 Python recognizes 'multiqc.modules.phantompeakqualtools' as an importable package[^1], 2024-05-17T11:39:44,373 but it is absent from setuptools' `packages` configuration. 2024-05-17T11:39:44,374 This leads to an ambiguous overall configuration. If you want to distribute this 2024-05-17T11:39:44,374 package, please make sure that 'multiqc.modules.phantompeakqualtools' is explicitly added 2024-05-17T11:39:44,375 to the `packages` configuration field. 2024-05-17T11:39:44,376 Alternatively, you can also rely on setuptools' discovery methods 2024-05-17T11:39:44,377 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-05-17T11:39:44,377 instead of `find_packages(...)`/`find:`). 2024-05-17T11:39:44,378 You can read more about "package discovery" on setuptools documentation page: 2024-05-17T11:39:44,379 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-05-17T11:39:44,380 If you don't want 'multiqc.modules.phantompeakqualtools' to be distributed and are 2024-05-17T11:39:44,381 already explicitly excluding 'multiqc.modules.phantompeakqualtools' via 2024-05-17T11:39:44,382 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-05-17T11:39:44,382 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-05-17T11:39:44,383 combination with a more fine grained `package-data` configuration. 2024-05-17T11:39:44,384 You can read more about "package data files" on setuptools documentation page: 2024-05-17T11:39:44,384 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-05-17T11:39:44,385 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-05-17T11:39:44,386 even if it does not contain any `.py` files. 2024-05-17T11:39:44,386 On the other hand, currently there is no concept of package data 2024-05-17T11:39:44,387 directory, all directories are treated like packages. 2024-05-17T11:39:44,387 ******************************************************************************** 2024-05-17T11:39:44,388 !! 2024-05-17T11:39:44,388 check.warn(importable) 2024-05-17T11:39:44,389 /tmp/pip-build-env-u8mgr1go/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'multiqc.modules.picard' is absent from the `packages` configuration. 2024-05-17T11:39:44,389 !! 2024-05-17T11:39:44,390 ******************************************************************************** 2024-05-17T11:39:44,391 ############################ 2024-05-17T11:39:44,391 # Package would be ignored # 2024-05-17T11:39:44,392 ############################ 2024-05-17T11:39:44,393 Python recognizes 'multiqc.modules.picard' as an importable package[^1], 2024-05-17T11:39:44,393 but it is absent from setuptools' `packages` configuration. 2024-05-17T11:39:44,394 This leads to an ambiguous overall configuration. If you want to distribute this 2024-05-17T11:39:44,395 package, please make sure that 'multiqc.modules.picard' is explicitly added 2024-05-17T11:39:44,395 to the `packages` configuration field. 2024-05-17T11:39:44,397 Alternatively, you can also rely on setuptools' discovery methods 2024-05-17T11:39:44,397 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-05-17T11:39:44,398 instead of `find_packages(...)`/`find:`). 2024-05-17T11:39:44,399 You can read more about "package discovery" on setuptools documentation page: 2024-05-17T11:39:44,400 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-05-17T11:39:44,401 If you don't want 'multiqc.modules.picard' to be distributed and are 2024-05-17T11:39:44,402 already explicitly excluding 'multiqc.modules.picard' via 2024-05-17T11:39:44,402 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-05-17T11:39:44,403 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-05-17T11:39:44,403 combination with a more fine grained `package-data` configuration. 2024-05-17T11:39:44,405 You can read more about "package data files" on setuptools documentation page: 2024-05-17T11:39:44,407 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-05-17T11:39:44,447 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-05-17T11:39:44,448 even if it does not contain any `.py` files. 2024-05-17T11:39:44,448 On the other hand, currently there is no concept of package data 2024-05-17T11:39:44,449 directory, all directories are treated like packages. 2024-05-17T11:39:44,449 ******************************************************************************** 2024-05-17T11:39:44,450 !! 2024-05-17T11:39:44,451 check.warn(importable) 2024-05-17T11:39:44,452 /tmp/pip-build-env-u8mgr1go/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'multiqc.modules.porechop' is absent from the `packages` configuration. 2024-05-17T11:39:44,453 !! 2024-05-17T11:39:44,453 ******************************************************************************** 2024-05-17T11:39:44,454 ############################ 2024-05-17T11:39:44,454 # Package would be ignored # 2024-05-17T11:39:44,454 ############################ 2024-05-17T11:39:44,455 Python recognizes 'multiqc.modules.porechop' as an importable package[^1], 2024-05-17T11:39:44,455 but it is absent from setuptools' `packages` configuration. 2024-05-17T11:39:44,456 This leads to an ambiguous overall configuration. If you want to distribute this 2024-05-17T11:39:44,456 package, please make sure that 'multiqc.modules.porechop' is explicitly added 2024-05-17T11:39:44,457 to the `packages` configuration field. 2024-05-17T11:39:44,457 Alternatively, you can also rely on setuptools' discovery methods 2024-05-17T11:39:44,458 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-05-17T11:39:44,458 instead of `find_packages(...)`/`find:`). 2024-05-17T11:39:44,459 You can read more about "package discovery" on setuptools documentation page: 2024-05-17T11:39:44,460 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-05-17T11:39:44,461 If you don't want 'multiqc.modules.porechop' to be distributed and are 2024-05-17T11:39:44,461 already explicitly excluding 'multiqc.modules.porechop' via 2024-05-17T11:39:44,462 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-05-17T11:39:44,462 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-05-17T11:39:44,463 combination with a more fine grained `package-data` configuration. 2024-05-17T11:39:44,464 You can read more about "package data files" on setuptools documentation page: 2024-05-17T11:39:44,465 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-05-17T11:39:44,467 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-05-17T11:39:44,467 even if it does not contain any `.py` files. 2024-05-17T11:39:44,468 On the other hand, currently there is no concept of package data 2024-05-17T11:39:44,468 directory, all directories are treated like packages. 2024-05-17T11:39:44,469 ******************************************************************************** 2024-05-17T11:39:44,470 !! 2024-05-17T11:39:44,471 check.warn(importable) 2024-05-17T11:39:44,471 /tmp/pip-build-env-u8mgr1go/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'multiqc.modules.preseq' is absent from the `packages` configuration. 2024-05-17T11:39:44,472 !! 2024-05-17T11:39:44,473 ******************************************************************************** 2024-05-17T11:39:44,473 ############################ 2024-05-17T11:39:44,474 # Package would be ignored # 2024-05-17T11:39:44,474 ############################ 2024-05-17T11:39:44,475 Python recognizes 'multiqc.modules.preseq' as an importable package[^1], 2024-05-17T11:39:44,476 but it is absent from setuptools' `packages` configuration. 2024-05-17T11:39:44,477 This leads to an ambiguous overall configuration. If you want to distribute this 2024-05-17T11:39:44,478 package, please make sure that 'multiqc.modules.preseq' is explicitly added 2024-05-17T11:39:44,478 to the `packages` configuration field. 2024-05-17T11:39:44,479 Alternatively, you can also rely on setuptools' discovery methods 2024-05-17T11:39:44,480 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-05-17T11:39:44,482 instead of `find_packages(...)`/`find:`). 2024-05-17T11:39:44,483 You can read more about "package discovery" on setuptools documentation page: 2024-05-17T11:39:44,484 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-05-17T11:39:44,484 If you don't want 'multiqc.modules.preseq' to be distributed and are 2024-05-17T11:39:44,485 already explicitly excluding 'multiqc.modules.preseq' via 2024-05-17T11:39:44,485 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-05-17T11:39:44,486 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-05-17T11:39:44,486 combination with a more fine grained `package-data` configuration. 2024-05-17T11:39:44,487 You can read more about "package data files" on setuptools documentation page: 2024-05-17T11:39:44,488 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-05-17T11:39:44,489 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-05-17T11:39:44,489 even if it does not contain any `.py` files. 2024-05-17T11:39:44,489 On the other hand, currently there is no concept of package data 2024-05-17T11:39:44,490 directory, all directories are treated like packages. 2024-05-17T11:39:44,490 ******************************************************************************** 2024-05-17T11:39:44,491 !! 2024-05-17T11:39:44,492 check.warn(importable) 2024-05-17T11:39:44,492 /tmp/pip-build-env-u8mgr1go/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'multiqc.modules.prinseqplusplus' is absent from the `packages` configuration. 2024-05-17T11:39:44,493 !! 2024-05-17T11:39:44,494 ******************************************************************************** 2024-05-17T11:39:44,494 ############################ 2024-05-17T11:39:44,495 # Package would be ignored # 2024-05-17T11:39:44,496 ############################ 2024-05-17T11:39:44,497 Python recognizes 'multiqc.modules.prinseqplusplus' as an importable package[^1], 2024-05-17T11:39:44,498 but it is absent from setuptools' `packages` configuration. 2024-05-17T11:39:44,499 This leads to an ambiguous overall configuration. If you want to distribute this 2024-05-17T11:39:44,499 package, please make sure that 'multiqc.modules.prinseqplusplus' is explicitly added 2024-05-17T11:39:44,500 to the `packages` configuration field. 2024-05-17T11:39:44,501 Alternatively, you can also rely on setuptools' discovery methods 2024-05-17T11:39:44,501 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-05-17T11:39:44,502 instead of `find_packages(...)`/`find:`). 2024-05-17T11:39:44,503 You can read more about "package discovery" on setuptools documentation page: 2024-05-17T11:39:44,504 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-05-17T11:39:44,505 If you don't want 'multiqc.modules.prinseqplusplus' to be distributed and are 2024-05-17T11:39:44,505 already explicitly excluding 'multiqc.modules.prinseqplusplus' via 2024-05-17T11:39:44,506 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-05-17T11:39:44,506 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-05-17T11:39:44,507 combination with a more fine grained `package-data` configuration. 2024-05-17T11:39:44,508 You can read more about "package data files" on setuptools documentation page: 2024-05-17T11:39:44,509 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-05-17T11:39:44,511 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-05-17T11:39:44,511 even if it does not contain any `.py` files. 2024-05-17T11:39:44,512 On the other hand, currently there is no concept of package data 2024-05-17T11:39:44,513 directory, all directories are treated like packages. 2024-05-17T11:39:44,513 ******************************************************************************** 2024-05-17T11:39:44,514 !! 2024-05-17T11:39:44,514 check.warn(importable) 2024-05-17T11:39:44,515 /tmp/pip-build-env-u8mgr1go/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'multiqc.modules.prokka' is absent from the `packages` configuration. 2024-05-17T11:39:44,515 !! 2024-05-17T11:39:44,516 ******************************************************************************** 2024-05-17T11:39:44,516 ############################ 2024-05-17T11:39:44,517 # Package would be ignored # 2024-05-17T11:39:44,517 ############################ 2024-05-17T11:39:44,518 Python recognizes 'multiqc.modules.prokka' as an importable package[^1], 2024-05-17T11:39:44,518 but it is absent from setuptools' `packages` configuration. 2024-05-17T11:39:44,519 This leads to an ambiguous overall configuration. If you want to distribute this 2024-05-17T11:39:44,519 package, please make sure that 'multiqc.modules.prokka' is explicitly added 2024-05-17T11:39:44,520 to the `packages` configuration field. 2024-05-17T11:39:44,520 Alternatively, you can also rely on setuptools' discovery methods 2024-05-17T11:39:44,521 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-05-17T11:39:44,521 instead of `find_packages(...)`/`find:`). 2024-05-17T11:39:44,522 You can read more about "package discovery" on setuptools documentation page: 2024-05-17T11:39:44,523 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-05-17T11:39:44,524 If you don't want 'multiqc.modules.prokka' to be distributed and are 2024-05-17T11:39:44,525 already explicitly excluding 'multiqc.modules.prokka' via 2024-05-17T11:39:44,525 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-05-17T11:39:44,526 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-05-17T11:39:44,526 combination with a more fine grained `package-data` configuration. 2024-05-17T11:39:44,527 You can read more about "package data files" on setuptools documentation page: 2024-05-17T11:39:44,528 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-05-17T11:39:44,530 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-05-17T11:39:44,530 even if it does not contain any `.py` files. 2024-05-17T11:39:44,531 On the other hand, currently there is no concept of package data 2024-05-17T11:39:44,531 directory, all directories are treated like packages. 2024-05-17T11:39:44,532 ******************************************************************************** 2024-05-17T11:39:44,532 !! 2024-05-17T11:39:44,533 check.warn(importable) 2024-05-17T11:39:44,533 /tmp/pip-build-env-u8mgr1go/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'multiqc.modules.purple' is absent from the `packages` configuration. 2024-05-17T11:39:44,534 !! 2024-05-17T11:39:44,536 ******************************************************************************** 2024-05-17T11:39:44,536 ############################ 2024-05-17T11:39:44,537 # Package would be ignored # 2024-05-17T11:39:44,538 ############################ 2024-05-17T11:39:44,538 Python recognizes 'multiqc.modules.purple' as an importable package[^1], 2024-05-17T11:39:44,539 but it is absent from setuptools' `packages` configuration. 2024-05-17T11:39:44,541 This leads to an ambiguous overall configuration. If you want to distribute this 2024-05-17T11:39:44,541 package, please make sure that 'multiqc.modules.purple' is explicitly added 2024-05-17T11:39:44,542 to the `packages` configuration field. 2024-05-17T11:39:44,543 Alternatively, you can also rely on setuptools' discovery methods 2024-05-17T11:39:44,544 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-05-17T11:39:44,544 instead of `find_packages(...)`/`find:`). 2024-05-17T11:39:44,545 You can read more about "package discovery" on setuptools documentation page: 2024-05-17T11:39:44,546 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-05-17T11:39:44,547 If you don't want 'multiqc.modules.purple' to be distributed and are 2024-05-17T11:39:44,547 already explicitly excluding 'multiqc.modules.purple' via 2024-05-17T11:39:44,547 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-05-17T11:39:44,548 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-05-17T11:39:44,548 combination with a more fine grained `package-data` configuration. 2024-05-17T11:39:44,549 You can read more about "package data files" on setuptools documentation page: 2024-05-17T11:39:44,549 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-05-17T11:39:44,551 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-05-17T11:39:44,551 even if it does not contain any `.py` files. 2024-05-17T11:39:44,552 On the other hand, currently there is no concept of package data 2024-05-17T11:39:44,552 directory, all directories are treated like packages. 2024-05-17T11:39:44,553 ******************************************************************************** 2024-05-17T11:39:44,554 !! 2024-05-17T11:39:44,554 check.warn(importable) 2024-05-17T11:39:44,555 /tmp/pip-build-env-u8mgr1go/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'multiqc.modules.pychopper' is absent from the `packages` configuration. 2024-05-17T11:39:44,556 !! 2024-05-17T11:39:44,557 ******************************************************************************** 2024-05-17T11:39:44,557 ############################ 2024-05-17T11:39:44,558 # Package would be ignored # 2024-05-17T11:39:44,559 ############################ 2024-05-17T11:39:44,559 Python recognizes 'multiqc.modules.pychopper' as an importable package[^1], 2024-05-17T11:39:44,560 but it is absent from setuptools' `packages` configuration. 2024-05-17T11:39:44,561 This leads to an ambiguous overall configuration. If you want to distribute this 2024-05-17T11:39:44,561 package, please make sure that 'multiqc.modules.pychopper' is explicitly added 2024-05-17T11:39:44,562 to the `packages` configuration field. 2024-05-17T11:39:44,563 Alternatively, you can also rely on setuptools' discovery methods 2024-05-17T11:39:44,563 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-05-17T11:39:44,564 instead of `find_packages(...)`/`find:`). 2024-05-17T11:39:44,565 You can read more about "package discovery" on setuptools documentation page: 2024-05-17T11:39:44,566 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-05-17T11:39:44,567 If you don't want 'multiqc.modules.pychopper' to be distributed and are 2024-05-17T11:39:44,567 already explicitly excluding 'multiqc.modules.pychopper' via 2024-05-17T11:39:44,568 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-05-17T11:39:44,568 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-05-17T11:39:44,569 combination with a more fine grained `package-data` configuration. 2024-05-17T11:39:44,570 You can read more about "package data files" on setuptools documentation page: 2024-05-17T11:39:44,571 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-05-17T11:39:44,573 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-05-17T11:39:44,573 even if it does not contain any `.py` files. 2024-05-17T11:39:44,574 On the other hand, currently there is no concept of package data 2024-05-17T11:39:44,574 directory, all directories are treated like packages. 2024-05-17T11:39:44,574 ******************************************************************************** 2024-05-17T11:39:44,575 !! 2024-05-17T11:39:44,576 check.warn(importable) 2024-05-17T11:39:44,576 /tmp/pip-build-env-u8mgr1go/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'multiqc.modules.pycoqc' is absent from the `packages` configuration. 2024-05-17T11:39:44,576 !! 2024-05-17T11:39:44,577 ******************************************************************************** 2024-05-17T11:39:44,578 ############################ 2024-05-17T11:39:44,578 # Package would be ignored # 2024-05-17T11:39:44,578 ############################ 2024-05-17T11:39:44,579 Python recognizes 'multiqc.modules.pycoqc' as an importable package[^1], 2024-05-17T11:39:44,579 but it is absent from setuptools' `packages` configuration. 2024-05-17T11:39:44,580 This leads to an ambiguous overall configuration. If you want to distribute this 2024-05-17T11:39:44,581 package, please make sure that 'multiqc.modules.pycoqc' is explicitly added 2024-05-17T11:39:44,581 to the `packages` configuration field. 2024-05-17T11:39:44,582 Alternatively, you can also rely on setuptools' discovery methods 2024-05-17T11:39:44,583 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-05-17T11:39:44,583 instead of `find_packages(...)`/`find:`). 2024-05-17T11:39:44,585 You can read more about "package discovery" on setuptools documentation page: 2024-05-17T11:39:44,586 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-05-17T11:39:44,587 If you don't want 'multiqc.modules.pycoqc' to be distributed and are 2024-05-17T11:39:44,587 already explicitly excluding 'multiqc.modules.pycoqc' via 2024-05-17T11:39:44,588 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-05-17T11:39:44,588 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-05-17T11:39:44,589 combination with a more fine grained `package-data` configuration. 2024-05-17T11:39:44,590 You can read more about "package data files" on setuptools documentation page: 2024-05-17T11:39:44,591 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-05-17T11:39:44,592 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-05-17T11:39:44,593 even if it does not contain any `.py` files. 2024-05-17T11:39:44,594 On the other hand, currently there is no concept of package data 2024-05-17T11:39:44,594 directory, all directories are treated like packages. 2024-05-17T11:39:44,595 ******************************************************************************** 2024-05-17T11:39:44,596 !! 2024-05-17T11:39:44,596 check.warn(importable) 2024-05-17T11:39:44,597 /tmp/pip-build-env-u8mgr1go/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'multiqc.modules.qc3C' is absent from the `packages` configuration. 2024-05-17T11:39:44,597 !! 2024-05-17T11:39:44,598 ******************************************************************************** 2024-05-17T11:39:44,599 ############################ 2024-05-17T11:39:44,599 # Package would be ignored # 2024-05-17T11:39:44,599 ############################ 2024-05-17T11:39:44,600 Python recognizes 'multiqc.modules.qc3C' as an importable package[^1], 2024-05-17T11:39:44,600 but it is absent from setuptools' `packages` configuration. 2024-05-17T11:39:44,601 This leads to an ambiguous overall configuration. If you want to distribute this 2024-05-17T11:39:44,601 package, please make sure that 'multiqc.modules.qc3C' is explicitly added 2024-05-17T11:39:44,601 to the `packages` configuration field. 2024-05-17T11:39:44,602 Alternatively, you can also rely on setuptools' discovery methods 2024-05-17T11:39:44,603 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-05-17T11:39:44,603 instead of `find_packages(...)`/`find:`). 2024-05-17T11:39:44,604 You can read more about "package discovery" on setuptools documentation page: 2024-05-17T11:39:44,604 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-05-17T11:39:44,605 If you don't want 'multiqc.modules.qc3C' to be distributed and are 2024-05-17T11:39:44,606 already explicitly excluding 'multiqc.modules.qc3C' via 2024-05-17T11:39:44,606 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-05-17T11:39:44,606 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-05-17T11:39:44,607 combination with a more fine grained `package-data` configuration. 2024-05-17T11:39:44,608 You can read more about "package data files" on setuptools documentation page: 2024-05-17T11:39:44,609 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-05-17T11:39:44,611 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-05-17T11:39:44,611 even if it does not contain any `.py` files. 2024-05-17T11:39:44,612 On the other hand, currently there is no concept of package data 2024-05-17T11:39:44,613 directory, all directories are treated like packages. 2024-05-17T11:39:44,613 ******************************************************************************** 2024-05-17T11:39:44,614 !! 2024-05-17T11:39:44,615 check.warn(importable) 2024-05-17T11:39:44,615 /tmp/pip-build-env-u8mgr1go/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'multiqc.modules.qorts' is absent from the `packages` configuration. 2024-05-17T11:39:44,616 !! 2024-05-17T11:39:44,617 ******************************************************************************** 2024-05-17T11:39:44,618 ############################ 2024-05-17T11:39:44,618 # Package would be ignored # 2024-05-17T11:39:44,618 ############################ 2024-05-17T11:39:44,619 Python recognizes 'multiqc.modules.qorts' as an importable package[^1], 2024-05-17T11:39:44,619 but it is absent from setuptools' `packages` configuration. 2024-05-17T11:39:44,620 This leads to an ambiguous overall configuration. If you want to distribute this 2024-05-17T11:39:44,621 package, please make sure that 'multiqc.modules.qorts' is explicitly added 2024-05-17T11:39:44,621 to the `packages` configuration field. 2024-05-17T11:39:44,622 Alternatively, you can also rely on setuptools' discovery methods 2024-05-17T11:39:44,623 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-05-17T11:39:44,623 instead of `find_packages(...)`/`find:`). 2024-05-17T11:39:44,624 You can read more about "package discovery" on setuptools documentation page: 2024-05-17T11:39:44,626 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-05-17T11:39:44,627 If you don't want 'multiqc.modules.qorts' to be distributed and are 2024-05-17T11:39:44,627 already explicitly excluding 'multiqc.modules.qorts' via 2024-05-17T11:39:44,627 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-05-17T11:39:44,627 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-05-17T11:39:44,628 combination with a more fine grained `package-data` configuration. 2024-05-17T11:39:44,629 You can read more about "package data files" on setuptools documentation page: 2024-05-17T11:39:44,629 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-05-17T11:39:44,630 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-05-17T11:39:44,631 even if it does not contain any `.py` files. 2024-05-17T11:39:44,631 On the other hand, currently there is no concept of package data 2024-05-17T11:39:44,631 directory, all directories are treated like packages. 2024-05-17T11:39:44,632 ******************************************************************************** 2024-05-17T11:39:44,632 !! 2024-05-17T11:39:44,633 check.warn(importable) 2024-05-17T11:39:44,633 /tmp/pip-build-env-u8mgr1go/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'multiqc.modules.qualimap' is absent from the `packages` configuration. 2024-05-17T11:39:44,634 !! 2024-05-17T11:39:44,634 ******************************************************************************** 2024-05-17T11:39:44,635 ############################ 2024-05-17T11:39:44,636 # Package would be ignored # 2024-05-17T11:39:44,636 ############################ 2024-05-17T11:39:44,637 Python recognizes 'multiqc.modules.qualimap' as an importable package[^1], 2024-05-17T11:39:44,637 but it is absent from setuptools' `packages` configuration. 2024-05-17T11:39:44,638 This leads to an ambiguous overall configuration. If you want to distribute this 2024-05-17T11:39:44,639 package, please make sure that 'multiqc.modules.qualimap' is explicitly added 2024-05-17T11:39:44,640 to the `packages` configuration field. 2024-05-17T11:39:44,641 Alternatively, you can also rely on setuptools' discovery methods 2024-05-17T11:39:44,641 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-05-17T11:39:44,642 instead of `find_packages(...)`/`find:`). 2024-05-17T11:39:44,643 You can read more about "package discovery" on setuptools documentation page: 2024-05-17T11:39:44,645 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-05-17T11:39:44,646 If you don't want 'multiqc.modules.qualimap' to be distributed and are 2024-05-17T11:39:44,646 already explicitly excluding 'multiqc.modules.qualimap' via 2024-05-17T11:39:44,647 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-05-17T11:39:44,647 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-05-17T11:39:44,648 combination with a more fine grained `package-data` configuration. 2024-05-17T11:39:44,649 You can read more about "package data files" on setuptools documentation page: 2024-05-17T11:39:44,650 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-05-17T11:39:44,651 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-05-17T11:39:44,652 even if it does not contain any `.py` files. 2024-05-17T11:39:44,652 On the other hand, currently there is no concept of package data 2024-05-17T11:39:44,653 directory, all directories are treated like packages. 2024-05-17T11:39:44,654 ******************************************************************************** 2024-05-17T11:39:44,655 !! 2024-05-17T11:39:44,655 check.warn(importable) 2024-05-17T11:39:44,655 /tmp/pip-build-env-u8mgr1go/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'multiqc.modules.quast' is absent from the `packages` configuration. 2024-05-17T11:39:44,656 !! 2024-05-17T11:39:44,656 ******************************************************************************** 2024-05-17T11:39:44,657 ############################ 2024-05-17T11:39:44,657 # Package would be ignored # 2024-05-17T11:39:44,657 ############################ 2024-05-17T11:39:44,658 Python recognizes 'multiqc.modules.quast' as an importable package[^1], 2024-05-17T11:39:44,658 but it is absent from setuptools' `packages` configuration. 2024-05-17T11:39:44,659 This leads to an ambiguous overall configuration. If you want to distribute this 2024-05-17T11:39:44,659 package, please make sure that 'multiqc.modules.quast' is explicitly added 2024-05-17T11:39:44,660 to the `packages` configuration field. 2024-05-17T11:39:44,660 Alternatively, you can also rely on setuptools' discovery methods 2024-05-17T11:39:44,661 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-05-17T11:39:44,661 instead of `find_packages(...)`/`find:`). 2024-05-17T11:39:44,662 You can read more about "package discovery" on setuptools documentation page: 2024-05-17T11:39:44,663 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-05-17T11:39:44,664 If you don't want 'multiqc.modules.quast' to be distributed and are 2024-05-17T11:39:44,664 already explicitly excluding 'multiqc.modules.quast' via 2024-05-17T11:39:44,665 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-05-17T11:39:44,666 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-05-17T11:39:44,666 combination with a more fine grained `package-data` configuration. 2024-05-17T11:39:44,667 You can read more about "package data files" on setuptools documentation page: 2024-05-17T11:39:44,669 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-05-17T11:39:44,670 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-05-17T11:39:44,671 even if it does not contain any `.py` files. 2024-05-17T11:39:44,671 On the other hand, currently there is no concept of package data 2024-05-17T11:39:44,672 directory, all directories are treated like packages. 2024-05-17T11:39:44,672 ******************************************************************************** 2024-05-17T11:39:44,673 !! 2024-05-17T11:39:44,674 check.warn(importable) 2024-05-17T11:39:44,674 /tmp/pip-build-env-u8mgr1go/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'multiqc.modules.rna_seqc' is absent from the `packages` configuration. 2024-05-17T11:39:44,675 !! 2024-05-17T11:39:44,676 ******************************************************************************** 2024-05-17T11:39:44,676 ############################ 2024-05-17T11:39:44,677 # Package would be ignored # 2024-05-17T11:39:44,677 ############################ 2024-05-17T11:39:44,678 Python recognizes 'multiqc.modules.rna_seqc' as an importable package[^1], 2024-05-17T11:39:44,678 but it is absent from setuptools' `packages` configuration. 2024-05-17T11:39:44,680 This leads to an ambiguous overall configuration. If you want to distribute this 2024-05-17T11:39:44,680 package, please make sure that 'multiqc.modules.rna_seqc' is explicitly added 2024-05-17T11:39:44,681 to the `packages` configuration field. 2024-05-17T11:39:44,682 Alternatively, you can also rely on setuptools' discovery methods 2024-05-17T11:39:44,682 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-05-17T11:39:44,683 instead of `find_packages(...)`/`find:`). 2024-05-17T11:39:44,683 You can read more about "package discovery" on setuptools documentation page: 2024-05-17T11:39:44,684 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-05-17T11:39:44,685 If you don't want 'multiqc.modules.rna_seqc' to be distributed and are 2024-05-17T11:39:44,685 already explicitly excluding 'multiqc.modules.rna_seqc' via 2024-05-17T11:39:44,685 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-05-17T11:39:44,686 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-05-17T11:39:44,686 combination with a more fine grained `package-data` configuration. 2024-05-17T11:39:44,687 You can read more about "package data files" on setuptools documentation page: 2024-05-17T11:39:44,687 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-05-17T11:39:44,688 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-05-17T11:39:44,689 even if it does not contain any `.py` files. 2024-05-17T11:39:44,689 On the other hand, currently there is no concept of package data 2024-05-17T11:39:44,689 directory, all directories are treated like packages. 2024-05-17T11:39:44,690 ******************************************************************************** 2024-05-17T11:39:44,691 !! 2024-05-17T11:39:44,692 check.warn(importable) 2024-05-17T11:39:44,692 /tmp/pip-build-env-u8mgr1go/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'multiqc.modules.rockhopper' is absent from the `packages` configuration. 2024-05-17T11:39:44,693 !! 2024-05-17T11:39:44,694 ******************************************************************************** 2024-05-17T11:39:44,694 ############################ 2024-05-17T11:39:44,695 # Package would be ignored # 2024-05-17T11:39:44,695 ############################ 2024-05-17T11:39:44,696 Python recognizes 'multiqc.modules.rockhopper' as an importable package[^1], 2024-05-17T11:39:44,696 but it is absent from setuptools' `packages` configuration. 2024-05-17T11:39:44,697 This leads to an ambiguous overall configuration. If you want to distribute this 2024-05-17T11:39:44,698 package, please make sure that 'multiqc.modules.rockhopper' is explicitly added 2024-05-17T11:39:44,699 to the `packages` configuration field. 2024-05-17T11:39:44,700 Alternatively, you can also rely on setuptools' discovery methods 2024-05-17T11:39:44,700 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-05-17T11:39:44,701 instead of `find_packages(...)`/`find:`). 2024-05-17T11:39:44,701 You can read more about "package discovery" on setuptools documentation page: 2024-05-17T11:39:44,702 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-05-17T11:39:44,703 If you don't want 'multiqc.modules.rockhopper' to be distributed and are 2024-05-17T11:39:44,704 already explicitly excluding 'multiqc.modules.rockhopper' via 2024-05-17T11:39:44,704 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-05-17T11:39:44,705 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-05-17T11:39:44,706 combination with a more fine grained `package-data` configuration. 2024-05-17T11:39:44,707 You can read more about "package data files" on setuptools documentation page: 2024-05-17T11:39:44,708 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-05-17T11:39:44,710 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-05-17T11:39:44,710 even if it does not contain any `.py` files. 2024-05-17T11:39:44,711 On the other hand, currently there is no concept of package data 2024-05-17T11:39:44,711 directory, all directories are treated like packages. 2024-05-17T11:39:44,711 ******************************************************************************** 2024-05-17T11:39:44,712 !! 2024-05-17T11:39:44,712 check.warn(importable) 2024-05-17T11:39:44,713 /tmp/pip-build-env-u8mgr1go/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'multiqc.modules.rsem' is absent from the `packages` configuration. 2024-05-17T11:39:44,713 !! 2024-05-17T11:39:44,714 ******************************************************************************** 2024-05-17T11:39:44,714 ############################ 2024-05-17T11:39:44,714 # Package would be ignored # 2024-05-17T11:39:44,715 ############################ 2024-05-17T11:39:44,715 Python recognizes 'multiqc.modules.rsem' as an importable package[^1], 2024-05-17T11:39:44,716 but it is absent from setuptools' `packages` configuration. 2024-05-17T11:39:44,716 This leads to an ambiguous overall configuration. If you want to distribute this 2024-05-17T11:39:44,717 package, please make sure that 'multiqc.modules.rsem' is explicitly added 2024-05-17T11:39:44,717 to the `packages` configuration field. 2024-05-17T11:39:44,718 Alternatively, you can also rely on setuptools' discovery methods 2024-05-17T11:39:44,719 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-05-17T11:39:44,719 instead of `find_packages(...)`/`find:`). 2024-05-17T11:39:44,720 You can read more about "package discovery" on setuptools documentation page: 2024-05-17T11:39:44,721 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-05-17T11:39:44,722 If you don't want 'multiqc.modules.rsem' to be distributed and are 2024-05-17T11:39:44,723 already explicitly excluding 'multiqc.modules.rsem' via 2024-05-17T11:39:44,723 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-05-17T11:39:44,724 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-05-17T11:39:44,724 combination with a more fine grained `package-data` configuration. 2024-05-17T11:39:44,725 You can read more about "package data files" on setuptools documentation page: 2024-05-17T11:39:44,727 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-05-17T11:39:44,728 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-05-17T11:39:44,729 even if it does not contain any `.py` files. 2024-05-17T11:39:44,729 On the other hand, currently there is no concept of package data 2024-05-17T11:39:44,730 directory, all directories are treated like packages. 2024-05-17T11:39:44,730 ******************************************************************************** 2024-05-17T11:39:44,732 !! 2024-05-17T11:39:44,732 check.warn(importable) 2024-05-17T11:39:44,733 /tmp/pip-build-env-u8mgr1go/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'multiqc.modules.rseqc' is absent from the `packages` configuration. 2024-05-17T11:39:44,734 !! 2024-05-17T11:39:44,736 ******************************************************************************** 2024-05-17T11:39:44,737 ############################ 2024-05-17T11:39:44,738 # Package would be ignored # 2024-05-17T11:39:44,739 ############################ 2024-05-17T11:39:44,740 Python recognizes 'multiqc.modules.rseqc' as an importable package[^1], 2024-05-17T11:39:44,742 but it is absent from setuptools' `packages` configuration. 2024-05-17T11:39:44,743 This leads to an ambiguous overall configuration. If you want to distribute this 2024-05-17T11:39:44,744 package, please make sure that 'multiqc.modules.rseqc' is explicitly added 2024-05-17T11:39:44,745 to the `packages` configuration field. 2024-05-17T11:39:44,746 Alternatively, you can also rely on setuptools' discovery methods 2024-05-17T11:39:44,747 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-05-17T11:39:44,747 instead of `find_packages(...)`/`find:`). 2024-05-17T11:39:44,748 You can read more about "package discovery" on setuptools documentation page: 2024-05-17T11:39:44,748 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-05-17T11:39:44,749 If you don't want 'multiqc.modules.rseqc' to be distributed and are 2024-05-17T11:39:44,750 already explicitly excluding 'multiqc.modules.rseqc' via 2024-05-17T11:39:44,750 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-05-17T11:39:44,750 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-05-17T11:39:44,751 combination with a more fine grained `package-data` configuration. 2024-05-17T11:39:44,752 You can read more about "package data files" on setuptools documentation page: 2024-05-17T11:39:44,753 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-05-17T11:39:44,754 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-05-17T11:39:44,755 even if it does not contain any `.py` files. 2024-05-17T11:39:44,755 On the other hand, currently there is no concept of package data 2024-05-17T11:39:44,756 directory, all directories are treated like packages. 2024-05-17T11:39:44,756 ******************************************************************************** 2024-05-17T11:39:44,757 !! 2024-05-17T11:39:44,758 check.warn(importable) 2024-05-17T11:39:44,758 /tmp/pip-build-env-u8mgr1go/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'multiqc.modules.rseqc.assets.js' is absent from the `packages` configuration. 2024-05-17T11:39:44,759 !! 2024-05-17T11:39:44,760 ******************************************************************************** 2024-05-17T11:39:44,760 ############################ 2024-05-17T11:39:44,761 # Package would be ignored # 2024-05-17T11:39:44,761 ############################ 2024-05-17T11:39:44,762 Python recognizes 'multiqc.modules.rseqc.assets.js' as an importable package[^1], 2024-05-17T11:39:44,762 but it is absent from setuptools' `packages` configuration. 2024-05-17T11:39:44,763 This leads to an ambiguous overall configuration. If you want to distribute this 2024-05-17T11:39:44,764 package, please make sure that 'multiqc.modules.rseqc.assets.js' is explicitly added 2024-05-17T11:39:44,764 to the `packages` configuration field. 2024-05-17T11:39:44,765 Alternatively, you can also rely on setuptools' discovery methods 2024-05-17T11:39:44,765 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-05-17T11:39:44,766 instead of `find_packages(...)`/`find:`). 2024-05-17T11:39:44,767 You can read more about "package discovery" on setuptools documentation page: 2024-05-17T11:39:44,768 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-05-17T11:39:44,769 If you don't want 'multiqc.modules.rseqc.assets.js' to be distributed and are 2024-05-17T11:39:44,770 already explicitly excluding 'multiqc.modules.rseqc.assets.js' via 2024-05-17T11:39:44,771 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-05-17T11:39:44,772 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-05-17T11:39:44,773 combination with a more fine grained `package-data` configuration. 2024-05-17T11:39:44,774 You can read more about "package data files" on setuptools documentation page: 2024-05-17T11:39:44,774 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-05-17T11:39:44,775 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-05-17T11:39:44,776 even if it does not contain any `.py` files. 2024-05-17T11:39:44,776 On the other hand, currently there is no concept of package data 2024-05-17T11:39:44,776 directory, all directories are treated like packages. 2024-05-17T11:39:44,777 ******************************************************************************** 2024-05-17T11:39:44,777 !! 2024-05-17T11:39:44,778 check.warn(importable) 2024-05-17T11:39:44,778 /tmp/pip-build-env-u8mgr1go/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'multiqc.modules.salmon' is absent from the `packages` configuration. 2024-05-17T11:39:44,779 !! 2024-05-17T11:39:44,780 ******************************************************************************** 2024-05-17T11:39:44,780 ############################ 2024-05-17T11:39:44,780 # Package would be ignored # 2024-05-17T11:39:44,781 ############################ 2024-05-17T11:39:44,781 Python recognizes 'multiqc.modules.salmon' as an importable package[^1], 2024-05-17T11:39:44,782 but it is absent from setuptools' `packages` configuration. 2024-05-17T11:39:44,783 This leads to an ambiguous overall configuration. If you want to distribute this 2024-05-17T11:39:44,783 package, please make sure that 'multiqc.modules.salmon' is explicitly added 2024-05-17T11:39:44,784 to the `packages` configuration field. 2024-05-17T11:39:44,785 Alternatively, you can also rely on setuptools' discovery methods 2024-05-17T11:39:44,785 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-05-17T11:39:44,786 instead of `find_packages(...)`/`find:`). 2024-05-17T11:39:44,787 You can read more about "package discovery" on setuptools documentation page: 2024-05-17T11:39:44,788 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-05-17T11:39:44,789 If you don't want 'multiqc.modules.salmon' to be distributed and are 2024-05-17T11:39:44,790 already explicitly excluding 'multiqc.modules.salmon' via 2024-05-17T11:39:44,791 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-05-17T11:39:44,791 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-05-17T11:39:44,792 combination with a more fine grained `package-data` configuration. 2024-05-17T11:39:44,793 You can read more about "package data files" on setuptools documentation page: 2024-05-17T11:39:44,794 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-05-17T11:39:44,795 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-05-17T11:39:44,795 even if it does not contain any `.py` files. 2024-05-17T11:39:44,796 On the other hand, currently there is no concept of package data 2024-05-17T11:39:44,796 directory, all directories are treated like packages. 2024-05-17T11:39:44,797 ******************************************************************************** 2024-05-17T11:39:44,798 !! 2024-05-17T11:39:44,798 check.warn(importable) 2024-05-17T11:39:44,799 /tmp/pip-build-env-u8mgr1go/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'multiqc.modules.sambamba' is absent from the `packages` configuration. 2024-05-17T11:39:44,801 !! 2024-05-17T11:39:44,802 ******************************************************************************** 2024-05-17T11:39:44,803 ############################ 2024-05-17T11:39:44,803 # Package would be ignored # 2024-05-17T11:39:44,804 ############################ 2024-05-17T11:39:44,804 Python recognizes 'multiqc.modules.sambamba' as an importable package[^1], 2024-05-17T11:39:44,804 but it is absent from setuptools' `packages` configuration. 2024-05-17T11:39:44,805 This leads to an ambiguous overall configuration. If you want to distribute this 2024-05-17T11:39:44,806 package, please make sure that 'multiqc.modules.sambamba' is explicitly added 2024-05-17T11:39:44,806 to the `packages` configuration field. 2024-05-17T11:39:44,807 Alternatively, you can also rely on setuptools' discovery methods 2024-05-17T11:39:44,807 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-05-17T11:39:44,807 instead of `find_packages(...)`/`find:`). 2024-05-17T11:39:44,808 You can read more about "package discovery" on setuptools documentation page: 2024-05-17T11:39:44,809 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-05-17T11:39:44,810 If you don't want 'multiqc.modules.sambamba' to be distributed and are 2024-05-17T11:39:44,810 already explicitly excluding 'multiqc.modules.sambamba' via 2024-05-17T11:39:44,811 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-05-17T11:39:44,811 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-05-17T11:39:44,812 combination with a more fine grained `package-data` configuration. 2024-05-17T11:39:44,813 You can read more about "package data files" on setuptools documentation page: 2024-05-17T11:39:44,814 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-05-17T11:39:44,815 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-05-17T11:39:44,816 even if it does not contain any `.py` files. 2024-05-17T11:39:44,816 On the other hand, currently there is no concept of package data 2024-05-17T11:39:44,817 directory, all directories are treated like packages. 2024-05-17T11:39:44,818 ******************************************************************************** 2024-05-17T11:39:44,819 !! 2024-05-17T11:39:44,819 check.warn(importable) 2024-05-17T11:39:44,820 /tmp/pip-build-env-u8mgr1go/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'multiqc.modules.samblaster' is absent from the `packages` configuration. 2024-05-17T11:39:44,820 !! 2024-05-17T11:39:44,821 ******************************************************************************** 2024-05-17T11:39:44,822 ############################ 2024-05-17T11:39:44,822 # Package would be ignored # 2024-05-17T11:39:44,823 ############################ 2024-05-17T11:39:44,823 Python recognizes 'multiqc.modules.samblaster' as an importable package[^1], 2024-05-17T11:39:44,824 but it is absent from setuptools' `packages` configuration. 2024-05-17T11:39:44,824 This leads to an ambiguous overall configuration. If you want to distribute this 2024-05-17T11:39:44,825 package, please make sure that 'multiqc.modules.samblaster' is explicitly added 2024-05-17T11:39:44,825 to the `packages` configuration field. 2024-05-17T11:39:44,827 Alternatively, you can also rely on setuptools' discovery methods 2024-05-17T11:39:44,827 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-05-17T11:39:44,831 instead of `find_packages(...)`/`find:`). 2024-05-17T11:39:44,833 You can read more about "package discovery" on setuptools documentation page: 2024-05-17T11:39:44,834 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-05-17T11:39:44,834 If you don't want 'multiqc.modules.samblaster' to be distributed and are 2024-05-17T11:39:44,835 already explicitly excluding 'multiqc.modules.samblaster' via 2024-05-17T11:39:44,835 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-05-17T11:39:44,836 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-05-17T11:39:44,836 combination with a more fine grained `package-data` configuration. 2024-05-17T11:39:44,837 You can read more about "package data files" on setuptools documentation page: 2024-05-17T11:39:44,837 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-05-17T11:39:44,838 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-05-17T11:39:44,839 even if it does not contain any `.py` files. 2024-05-17T11:39:44,839 On the other hand, currently there is no concept of package data 2024-05-17T11:39:44,840 directory, all directories are treated like packages. 2024-05-17T11:39:44,840 ******************************************************************************** 2024-05-17T11:39:44,842 !! 2024-05-17T11:39:44,842 check.warn(importable) 2024-05-17T11:39:44,843 /tmp/pip-build-env-u8mgr1go/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'multiqc.modules.samtools' is absent from the `packages` configuration. 2024-05-17T11:39:44,844 !! 2024-05-17T11:39:44,845 ******************************************************************************** 2024-05-17T11:39:44,846 ############################ 2024-05-17T11:39:44,846 # Package would be ignored # 2024-05-17T11:39:44,847 ############################ 2024-05-17T11:39:44,848 Python recognizes 'multiqc.modules.samtools' as an importable package[^1], 2024-05-17T11:39:44,848 but it is absent from setuptools' `packages` configuration. 2024-05-17T11:39:44,849 This leads to an ambiguous overall configuration. If you want to distribute this 2024-05-17T11:39:44,850 package, please make sure that 'multiqc.modules.samtools' is explicitly added 2024-05-17T11:39:44,850 to the `packages` configuration field. 2024-05-17T11:39:44,852 Alternatively, you can also rely on setuptools' discovery methods 2024-05-17T11:39:44,852 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-05-17T11:39:44,853 instead of `find_packages(...)`/`find:`). 2024-05-17T11:39:44,854 You can read more about "package discovery" on setuptools documentation page: 2024-05-17T11:39:44,855 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-05-17T11:39:44,856 If you don't want 'multiqc.modules.samtools' to be distributed and are 2024-05-17T11:39:44,857 already explicitly excluding 'multiqc.modules.samtools' via 2024-05-17T11:39:44,857 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-05-17T11:39:44,858 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-05-17T11:39:44,858 combination with a more fine grained `package-data` configuration. 2024-05-17T11:39:44,859 You can read more about "package data files" on setuptools documentation page: 2024-05-17T11:39:44,860 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-05-17T11:39:44,862 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-05-17T11:39:44,862 even if it does not contain any `.py` files. 2024-05-17T11:39:44,863 On the other hand, currently there is no concept of package data 2024-05-17T11:39:44,864 directory, all directories are treated like packages. 2024-05-17T11:39:44,864 ******************************************************************************** 2024-05-17T11:39:44,865 !! 2024-05-17T11:39:44,865 check.warn(importable) 2024-05-17T11:39:44,866 /tmp/pip-build-env-u8mgr1go/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'multiqc.modules.sargasso' is absent from the `packages` configuration. 2024-05-17T11:39:44,866 !! 2024-05-17T11:39:44,867 ******************************************************************************** 2024-05-17T11:39:44,867 ############################ 2024-05-17T11:39:44,867 # Package would be ignored # 2024-05-17T11:39:44,868 ############################ 2024-05-17T11:39:44,868 Python recognizes 'multiqc.modules.sargasso' as an importable package[^1], 2024-05-17T11:39:44,869 but it is absent from setuptools' `packages` configuration. 2024-05-17T11:39:44,869 This leads to an ambiguous overall configuration. If you want to distribute this 2024-05-17T11:39:44,870 package, please make sure that 'multiqc.modules.sargasso' is explicitly added 2024-05-17T11:39:44,870 to the `packages` configuration field. 2024-05-17T11:39:44,871 Alternatively, you can also rely on setuptools' discovery methods 2024-05-17T11:39:44,871 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-05-17T11:39:44,872 instead of `find_packages(...)`/`find:`). 2024-05-17T11:39:44,873 You can read more about "package discovery" on setuptools documentation page: 2024-05-17T11:39:44,873 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-05-17T11:39:44,874 If you don't want 'multiqc.modules.sargasso' to be distributed and are 2024-05-17T11:39:44,875 already explicitly excluding 'multiqc.modules.sargasso' via 2024-05-17T11:39:44,875 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-05-17T11:39:44,876 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-05-17T11:39:44,876 combination with a more fine grained `package-data` configuration. 2024-05-17T11:39:44,877 You can read more about "package data files" on setuptools documentation page: 2024-05-17T11:39:44,878 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-05-17T11:39:44,879 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-05-17T11:39:44,880 even if it does not contain any `.py` files. 2024-05-17T11:39:44,881 On the other hand, currently there is no concept of package data 2024-05-17T11:39:44,881 directory, all directories are treated like packages. 2024-05-17T11:39:44,882 ******************************************************************************** 2024-05-17T11:39:44,882 !! 2024-05-17T11:39:44,883 check.warn(importable) 2024-05-17T11:39:44,883 /tmp/pip-build-env-u8mgr1go/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'multiqc.modules.seqera_cli' is absent from the `packages` configuration. 2024-05-17T11:39:44,884 !! 2024-05-17T11:39:44,885 ******************************************************************************** 2024-05-17T11:39:44,885 ############################ 2024-05-17T11:39:44,886 # Package would be ignored # 2024-05-17T11:39:44,886 ############################ 2024-05-17T11:39:44,887 Python recognizes 'multiqc.modules.seqera_cli' as an importable package[^1], 2024-05-17T11:39:44,887 but it is absent from setuptools' `packages` configuration. 2024-05-17T11:39:44,888 This leads to an ambiguous overall configuration. If you want to distribute this 2024-05-17T11:39:44,889 package, please make sure that 'multiqc.modules.seqera_cli' is explicitly added 2024-05-17T11:39:44,890 to the `packages` configuration field. 2024-05-17T11:39:44,891 Alternatively, you can also rely on setuptools' discovery methods 2024-05-17T11:39:44,891 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-05-17T11:39:44,891 instead of `find_packages(...)`/`find:`). 2024-05-17T11:39:44,892 You can read more about "package discovery" on setuptools documentation page: 2024-05-17T11:39:44,893 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-05-17T11:39:44,894 If you don't want 'multiqc.modules.seqera_cli' to be distributed and are 2024-05-17T11:39:44,894 already explicitly excluding 'multiqc.modules.seqera_cli' via 2024-05-17T11:39:44,894 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-05-17T11:39:44,895 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-05-17T11:39:44,895 combination with a more fine grained `package-data` configuration. 2024-05-17T11:39:44,896 You can read more about "package data files" on setuptools documentation page: 2024-05-17T11:39:44,897 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-05-17T11:39:44,898 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-05-17T11:39:44,899 even if it does not contain any `.py` files. 2024-05-17T11:39:44,899 On the other hand, currently there is no concept of package data 2024-05-17T11:39:44,900 directory, all directories are treated like packages. 2024-05-17T11:39:44,900 ******************************************************************************** 2024-05-17T11:39:44,901 !! 2024-05-17T11:39:44,902 check.warn(importable) 2024-05-17T11:39:44,902 /tmp/pip-build-env-u8mgr1go/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'multiqc.modules.sequali' is absent from the `packages` configuration. 2024-05-17T11:39:44,903 !! 2024-05-17T11:39:44,904 ******************************************************************************** 2024-05-17T11:39:44,904 ############################ 2024-05-17T11:39:44,905 # Package would be ignored # 2024-05-17T11:39:44,905 ############################ 2024-05-17T11:39:44,906 Python recognizes 'multiqc.modules.sequali' as an importable package[^1], 2024-05-17T11:39:44,907 but it is absent from setuptools' `packages` configuration. 2024-05-17T11:39:44,908 This leads to an ambiguous overall configuration. If you want to distribute this 2024-05-17T11:39:44,908 package, please make sure that 'multiqc.modules.sequali' is explicitly added 2024-05-17T11:39:44,909 to the `packages` configuration field. 2024-05-17T11:39:44,910 Alternatively, you can also rely on setuptools' discovery methods 2024-05-17T11:39:44,910 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-05-17T11:39:44,911 instead of `find_packages(...)`/`find:`). 2024-05-17T11:39:44,912 You can read more about "package discovery" on setuptools documentation page: 2024-05-17T11:39:44,913 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-05-17T11:39:44,914 If you don't want 'multiqc.modules.sequali' to be distributed and are 2024-05-17T11:39:44,915 already explicitly excluding 'multiqc.modules.sequali' via 2024-05-17T11:39:44,915 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-05-17T11:39:44,916 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-05-17T11:39:44,916 combination with a more fine grained `package-data` configuration. 2024-05-17T11:39:44,918 You can read more about "package data files" on setuptools documentation page: 2024-05-17T11:39:44,919 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-05-17T11:39:44,920 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-05-17T11:39:44,920 even if it does not contain any `.py` files. 2024-05-17T11:39:44,921 On the other hand, currently there is no concept of package data 2024-05-17T11:39:44,921 directory, all directories are treated like packages. 2024-05-17T11:39:44,922 ******************************************************************************** 2024-05-17T11:39:44,923 !! 2024-05-17T11:39:44,923 check.warn(importable) 2024-05-17T11:39:44,924 /tmp/pip-build-env-u8mgr1go/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'multiqc.modules.seqwho' is absent from the `packages` configuration. 2024-05-17T11:39:44,924 !! 2024-05-17T11:39:44,925 ******************************************************************************** 2024-05-17T11:39:44,925 ############################ 2024-05-17T11:39:44,926 # Package would be ignored # 2024-05-17T11:39:44,927 ############################ 2024-05-17T11:39:44,928 Python recognizes 'multiqc.modules.seqwho' as an importable package[^1], 2024-05-17T11:39:44,928 but it is absent from setuptools' `packages` configuration. 2024-05-17T11:39:44,930 This leads to an ambiguous overall configuration. If you want to distribute this 2024-05-17T11:39:44,930 package, please make sure that 'multiqc.modules.seqwho' is explicitly added 2024-05-17T11:39:44,931 to the `packages` configuration field. 2024-05-17T11:39:44,932 Alternatively, you can also rely on setuptools' discovery methods 2024-05-17T11:39:44,932 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-05-17T11:39:44,933 instead of `find_packages(...)`/`find:`). 2024-05-17T11:39:44,934 You can read more about "package discovery" on setuptools documentation page: 2024-05-17T11:39:44,935 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-05-17T11:39:44,936 If you don't want 'multiqc.modules.seqwho' to be distributed and are 2024-05-17T11:39:44,937 already explicitly excluding 'multiqc.modules.seqwho' via 2024-05-17T11:39:44,938 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-05-17T11:39:44,939 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-05-17T11:39:44,939 combination with a more fine grained `package-data` configuration. 2024-05-17T11:39:44,941 You can read more about "package data files" on setuptools documentation page: 2024-05-17T11:39:44,943 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-05-17T11:39:44,945 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-05-17T11:39:44,946 even if it does not contain any `.py` files. 2024-05-17T11:39:44,947 On the other hand, currently there is no concept of package data 2024-05-17T11:39:44,947 directory, all directories are treated like packages. 2024-05-17T11:39:44,948 ******************************************************************************** 2024-05-17T11:39:44,950 !! 2024-05-17T11:39:44,950 check.warn(importable) 2024-05-17T11:39:44,951 /tmp/pip-build-env-u8mgr1go/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'multiqc.modules.seqyclean' is absent from the `packages` configuration. 2024-05-17T11:39:44,952 !! 2024-05-17T11:39:44,953 ******************************************************************************** 2024-05-17T11:39:44,954 ############################ 2024-05-17T11:39:44,955 # Package would be ignored # 2024-05-17T11:39:44,956 ############################ 2024-05-17T11:39:44,957 Python recognizes 'multiqc.modules.seqyclean' as an importable package[^1], 2024-05-17T11:39:44,957 but it is absent from setuptools' `packages` configuration. 2024-05-17T11:39:44,958 This leads to an ambiguous overall configuration. If you want to distribute this 2024-05-17T11:39:44,959 package, please make sure that 'multiqc.modules.seqyclean' is explicitly added 2024-05-17T11:39:44,959 to the `packages` configuration field. 2024-05-17T11:39:44,960 Alternatively, you can also rely on setuptools' discovery methods 2024-05-17T11:39:44,961 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-05-17T11:39:44,962 instead of `find_packages(...)`/`find:`). 2024-05-17T11:39:44,963 You can read more about "package discovery" on setuptools documentation page: 2024-05-17T11:39:44,964 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-05-17T11:39:44,965 If you don't want 'multiqc.modules.seqyclean' to be distributed and are 2024-05-17T11:39:44,966 already explicitly excluding 'multiqc.modules.seqyclean' via 2024-05-17T11:39:44,966 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-05-17T11:39:44,967 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-05-17T11:39:44,967 combination with a more fine grained `package-data` configuration. 2024-05-17T11:39:44,969 You can read more about "package data files" on setuptools documentation page: 2024-05-17T11:39:44,970 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-05-17T11:39:44,972 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-05-17T11:39:44,973 even if it does not contain any `.py` files. 2024-05-17T11:39:44,974 On the other hand, currently there is no concept of package data 2024-05-17T11:39:44,974 directory, all directories are treated like packages. 2024-05-17T11:39:44,975 ******************************************************************************** 2024-05-17T11:39:44,976 !! 2024-05-17T11:39:44,977 check.warn(importable) 2024-05-17T11:39:44,978 /tmp/pip-build-env-u8mgr1go/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'multiqc.modules.sexdeterrmine' is absent from the `packages` configuration. 2024-05-17T11:39:44,978 !! 2024-05-17T11:39:44,980 ******************************************************************************** 2024-05-17T11:39:44,981 ############################ 2024-05-17T11:39:44,981 # Package would be ignored # 2024-05-17T11:39:44,982 ############################ 2024-05-17T11:39:44,983 Python recognizes 'multiqc.modules.sexdeterrmine' as an importable package[^1], 2024-05-17T11:39:44,984 but it is absent from setuptools' `packages` configuration. 2024-05-17T11:39:44,985 This leads to an ambiguous overall configuration. If you want to distribute this 2024-05-17T11:39:44,986 package, please make sure that 'multiqc.modules.sexdeterrmine' is explicitly added 2024-05-17T11:39:44,986 to the `packages` configuration field. 2024-05-17T11:39:44,988 Alternatively, you can also rely on setuptools' discovery methods 2024-05-17T11:39:44,989 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-05-17T11:39:44,989 instead of `find_packages(...)`/`find:`). 2024-05-17T11:39:44,991 You can read more about "package discovery" on setuptools documentation page: 2024-05-17T11:39:44,992 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-05-17T11:39:44,994 If you don't want 'multiqc.modules.sexdeterrmine' to be distributed and are 2024-05-17T11:39:44,995 already explicitly excluding 'multiqc.modules.sexdeterrmine' via 2024-05-17T11:39:44,995 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-05-17T11:39:44,996 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-05-17T11:39:44,997 combination with a more fine grained `package-data` configuration. 2024-05-17T11:39:44,998 You can read more about "package data files" on setuptools documentation page: 2024-05-17T11:39:44,999 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-05-17T11:39:45,000 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-05-17T11:39:45,001 even if it does not contain any `.py` files. 2024-05-17T11:39:45,002 On the other hand, currently there is no concept of package data 2024-05-17T11:39:45,002 directory, all directories are treated like packages. 2024-05-17T11:39:45,003 ******************************************************************************** 2024-05-17T11:39:45,004 !! 2024-05-17T11:39:45,004 check.warn(importable) 2024-05-17T11:39:45,005 /tmp/pip-build-env-u8mgr1go/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'multiqc.modules.sickle' is absent from the `packages` configuration. 2024-05-17T11:39:45,005 !! 2024-05-17T11:39:45,007 ******************************************************************************** 2024-05-17T11:39:45,007 ############################ 2024-05-17T11:39:45,008 # Package would be ignored # 2024-05-17T11:39:45,009 ############################ 2024-05-17T11:39:45,009 Python recognizes 'multiqc.modules.sickle' as an importable package[^1], 2024-05-17T11:39:45,010 but it is absent from setuptools' `packages` configuration. 2024-05-17T11:39:45,012 This leads to an ambiguous overall configuration. If you want to distribute this 2024-05-17T11:39:45,013 package, please make sure that 'multiqc.modules.sickle' is explicitly added 2024-05-17T11:39:45,015 to the `packages` configuration field. 2024-05-17T11:39:45,016 Alternatively, you can also rely on setuptools' discovery methods 2024-05-17T11:39:45,018 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-05-17T11:39:45,019 instead of `find_packages(...)`/`find:`). 2024-05-17T11:39:45,057 You can read more about "package discovery" on setuptools documentation page: 2024-05-17T11:39:45,058 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-05-17T11:39:45,059 If you don't want 'multiqc.modules.sickle' to be distributed and are 2024-05-17T11:39:45,060 already explicitly excluding 'multiqc.modules.sickle' via 2024-05-17T11:39:45,061 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-05-17T11:39:45,061 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-05-17T11:39:45,062 combination with a more fine grained `package-data` configuration. 2024-05-17T11:39:45,063 You can read more about "package data files" on setuptools documentation page: 2024-05-17T11:39:45,064 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-05-17T11:39:45,066 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-05-17T11:39:45,067 even if it does not contain any `.py` files. 2024-05-17T11:39:45,067 On the other hand, currently there is no concept of package data 2024-05-17T11:39:45,068 directory, all directories are treated like packages. 2024-05-17T11:39:45,069 ******************************************************************************** 2024-05-17T11:39:45,070 !! 2024-05-17T11:39:45,070 check.warn(importable) 2024-05-17T11:39:45,071 /tmp/pip-build-env-u8mgr1go/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'multiqc.modules.skewer' is absent from the `packages` configuration. 2024-05-17T11:39:45,072 !! 2024-05-17T11:39:45,073 ******************************************************************************** 2024-05-17T11:39:45,073 ############################ 2024-05-17T11:39:45,074 # Package would be ignored # 2024-05-17T11:39:45,074 ############################ 2024-05-17T11:39:45,074 Python recognizes 'multiqc.modules.skewer' as an importable package[^1], 2024-05-17T11:39:45,075 but it is absent from setuptools' `packages` configuration. 2024-05-17T11:39:45,076 This leads to an ambiguous overall configuration. If you want to distribute this 2024-05-17T11:39:45,076 package, please make sure that 'multiqc.modules.skewer' is explicitly added 2024-05-17T11:39:45,077 to the `packages` configuration field. 2024-05-17T11:39:45,078 Alternatively, you can also rely on setuptools' discovery methods 2024-05-17T11:39:45,078 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-05-17T11:39:45,079 instead of `find_packages(...)`/`find:`). 2024-05-17T11:39:45,080 You can read more about "package discovery" on setuptools documentation page: 2024-05-17T11:39:45,081 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-05-17T11:39:45,082 If you don't want 'multiqc.modules.skewer' to be distributed and are 2024-05-17T11:39:45,082 already explicitly excluding 'multiqc.modules.skewer' via 2024-05-17T11:39:45,083 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-05-17T11:39:45,083 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-05-17T11:39:45,084 combination with a more fine grained `package-data` configuration. 2024-05-17T11:39:45,085 You can read more about "package data files" on setuptools documentation page: 2024-05-17T11:39:45,086 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-05-17T11:39:45,088 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-05-17T11:39:45,089 even if it does not contain any `.py` files. 2024-05-17T11:39:45,090 On the other hand, currently there is no concept of package data 2024-05-17T11:39:45,090 directory, all directories are treated like packages. 2024-05-17T11:39:45,091 ******************************************************************************** 2024-05-17T11:39:45,092 !! 2024-05-17T11:39:45,093 check.warn(importable) 2024-05-17T11:39:45,093 /tmp/pip-build-env-u8mgr1go/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'multiqc.modules.slamdunk' is absent from the `packages` configuration. 2024-05-17T11:39:45,094 !! 2024-05-17T11:39:45,095 ******************************************************************************** 2024-05-17T11:39:45,096 ############################ 2024-05-17T11:39:45,097 # Package would be ignored # 2024-05-17T11:39:45,097 ############################ 2024-05-17T11:39:45,098 Python recognizes 'multiqc.modules.slamdunk' as an importable package[^1], 2024-05-17T11:39:45,099 but it is absent from setuptools' `packages` configuration. 2024-05-17T11:39:45,100 This leads to an ambiguous overall configuration. If you want to distribute this 2024-05-17T11:39:45,100 package, please make sure that 'multiqc.modules.slamdunk' is explicitly added 2024-05-17T11:39:45,101 to the `packages` configuration field. 2024-05-17T11:39:45,102 Alternatively, you can also rely on setuptools' discovery methods 2024-05-17T11:39:45,103 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-05-17T11:39:45,104 instead of `find_packages(...)`/`find:`). 2024-05-17T11:39:45,105 You can read more about "package discovery" on setuptools documentation page: 2024-05-17T11:39:45,106 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-05-17T11:39:45,107 If you don't want 'multiqc.modules.slamdunk' to be distributed and are 2024-05-17T11:39:45,107 already explicitly excluding 'multiqc.modules.slamdunk' via 2024-05-17T11:39:45,108 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-05-17T11:39:45,108 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-05-17T11:39:45,109 combination with a more fine grained `package-data` configuration. 2024-05-17T11:39:45,110 You can read more about "package data files" on setuptools documentation page: 2024-05-17T11:39:45,111 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-05-17T11:39:45,114 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-05-17T11:39:45,114 even if it does not contain any `.py` files. 2024-05-17T11:39:45,115 On the other hand, currently there is no concept of package data 2024-05-17T11:39:45,116 directory, all directories are treated like packages. 2024-05-17T11:39:45,116 ******************************************************************************** 2024-05-17T11:39:45,117 !! 2024-05-17T11:39:45,118 check.warn(importable) 2024-05-17T11:39:45,119 /tmp/pip-build-env-u8mgr1go/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'multiqc.modules.snippy' is absent from the `packages` configuration. 2024-05-17T11:39:45,119 !! 2024-05-17T11:39:45,120 ******************************************************************************** 2024-05-17T11:39:45,121 ############################ 2024-05-17T11:39:45,122 # Package would be ignored # 2024-05-17T11:39:45,122 ############################ 2024-05-17T11:39:45,123 Python recognizes 'multiqc.modules.snippy' as an importable package[^1], 2024-05-17T11:39:45,124 but it is absent from setuptools' `packages` configuration. 2024-05-17T11:39:45,125 This leads to an ambiguous overall configuration. If you want to distribute this 2024-05-17T11:39:45,126 package, please make sure that 'multiqc.modules.snippy' is explicitly added 2024-05-17T11:39:45,126 to the `packages` configuration field. 2024-05-17T11:39:45,128 Alternatively, you can also rely on setuptools' discovery methods 2024-05-17T11:39:45,128 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-05-17T11:39:45,129 instead of `find_packages(...)`/`find:`). 2024-05-17T11:39:45,130 You can read more about "package discovery" on setuptools documentation page: 2024-05-17T11:39:45,132 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-05-17T11:39:45,133 If you don't want 'multiqc.modules.snippy' to be distributed and are 2024-05-17T11:39:45,134 already explicitly excluding 'multiqc.modules.snippy' via 2024-05-17T11:39:45,134 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-05-17T11:39:45,135 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-05-17T11:39:45,135 combination with a more fine grained `package-data` configuration. 2024-05-17T11:39:45,137 You can read more about "package data files" on setuptools documentation page: 2024-05-17T11:39:45,138 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-05-17T11:39:45,140 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-05-17T11:39:45,141 even if it does not contain any `.py` files. 2024-05-17T11:39:45,141 On the other hand, currently there is no concept of package data 2024-05-17T11:39:45,142 directory, all directories are treated like packages. 2024-05-17T11:39:45,142 ******************************************************************************** 2024-05-17T11:39:45,143 !! 2024-05-17T11:39:45,144 check.warn(importable) 2024-05-17T11:39:45,144 /tmp/pip-build-env-u8mgr1go/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'multiqc.modules.snpeff' is absent from the `packages` configuration. 2024-05-17T11:39:45,145 !! 2024-05-17T11:39:45,146 ******************************************************************************** 2024-05-17T11:39:45,146 ############################ 2024-05-17T11:39:45,147 # Package would be ignored # 2024-05-17T11:39:45,147 ############################ 2024-05-17T11:39:45,148 Python recognizes 'multiqc.modules.snpeff' as an importable package[^1], 2024-05-17T11:39:45,149 but it is absent from setuptools' `packages` configuration. 2024-05-17T11:39:45,150 This leads to an ambiguous overall configuration. If you want to distribute this 2024-05-17T11:39:45,150 package, please make sure that 'multiqc.modules.snpeff' is explicitly added 2024-05-17T11:39:45,151 to the `packages` configuration field. 2024-05-17T11:39:45,152 Alternatively, you can also rely on setuptools' discovery methods 2024-05-17T11:39:45,153 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-05-17T11:39:45,153 instead of `find_packages(...)`/`find:`). 2024-05-17T11:39:45,154 You can read more about "package discovery" on setuptools documentation page: 2024-05-17T11:39:45,156 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-05-17T11:39:45,157 If you don't want 'multiqc.modules.snpeff' to be distributed and are 2024-05-17T11:39:45,158 already explicitly excluding 'multiqc.modules.snpeff' via 2024-05-17T11:39:45,158 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-05-17T11:39:45,159 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-05-17T11:39:45,160 combination with a more fine grained `package-data` configuration. 2024-05-17T11:39:45,161 You can read more about "package data files" on setuptools documentation page: 2024-05-17T11:39:45,162 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-05-17T11:39:45,164 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-05-17T11:39:45,165 even if it does not contain any `.py` files. 2024-05-17T11:39:45,165 On the other hand, currently there is no concept of package data 2024-05-17T11:39:45,166 directory, all directories are treated like packages. 2024-05-17T11:39:45,167 ******************************************************************************** 2024-05-17T11:39:45,168 !! 2024-05-17T11:39:45,168 check.warn(importable) 2024-05-17T11:39:45,169 /tmp/pip-build-env-u8mgr1go/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'multiqc.modules.snpsplit' is absent from the `packages` configuration. 2024-05-17T11:39:45,170 !! 2024-05-17T11:39:45,171 ******************************************************************************** 2024-05-17T11:39:45,172 ############################ 2024-05-17T11:39:45,173 # Package would be ignored # 2024-05-17T11:39:45,174 ############################ 2024-05-17T11:39:45,175 Python recognizes 'multiqc.modules.snpsplit' as an importable package[^1], 2024-05-17T11:39:45,176 but it is absent from setuptools' `packages` configuration. 2024-05-17T11:39:45,177 This leads to an ambiguous overall configuration. If you want to distribute this 2024-05-17T11:39:45,178 package, please make sure that 'multiqc.modules.snpsplit' is explicitly added 2024-05-17T11:39:45,178 to the `packages` configuration field. 2024-05-17T11:39:45,179 Alternatively, you can also rely on setuptools' discovery methods 2024-05-17T11:39:45,180 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-05-17T11:39:45,180 instead of `find_packages(...)`/`find:`). 2024-05-17T11:39:45,181 You can read more about "package discovery" on setuptools documentation page: 2024-05-17T11:39:45,182 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-05-17T11:39:45,183 If you don't want 'multiqc.modules.snpsplit' to be distributed and are 2024-05-17T11:39:45,184 already explicitly excluding 'multiqc.modules.snpsplit' via 2024-05-17T11:39:45,185 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-05-17T11:39:45,185 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-05-17T11:39:45,186 combination with a more fine grained `package-data` configuration. 2024-05-17T11:39:45,187 You can read more about "package data files" on setuptools documentation page: 2024-05-17T11:39:45,188 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-05-17T11:39:45,190 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-05-17T11:39:45,191 even if it does not contain any `.py` files. 2024-05-17T11:39:45,191 On the other hand, currently there is no concept of package data 2024-05-17T11:39:45,192 directory, all directories are treated like packages. 2024-05-17T11:39:45,193 ******************************************************************************** 2024-05-17T11:39:45,194 !! 2024-05-17T11:39:45,195 check.warn(importable) 2024-05-17T11:39:45,195 /tmp/pip-build-env-u8mgr1go/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'multiqc.modules.somalier' is absent from the `packages` configuration. 2024-05-17T11:39:45,196 !! 2024-05-17T11:39:45,197 ******************************************************************************** 2024-05-17T11:39:45,198 ############################ 2024-05-17T11:39:45,198 # Package would be ignored # 2024-05-17T11:39:45,199 ############################ 2024-05-17T11:39:45,200 Python recognizes 'multiqc.modules.somalier' as an importable package[^1], 2024-05-17T11:39:45,201 but it is absent from setuptools' `packages` configuration. 2024-05-17T11:39:45,202 This leads to an ambiguous overall configuration. If you want to distribute this 2024-05-17T11:39:45,202 package, please make sure that 'multiqc.modules.somalier' is explicitly added 2024-05-17T11:39:45,203 to the `packages` configuration field. 2024-05-17T11:39:45,204 Alternatively, you can also rely on setuptools' discovery methods 2024-05-17T11:39:45,204 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-05-17T11:39:45,205 instead of `find_packages(...)`/`find:`). 2024-05-17T11:39:45,206 You can read more about "package discovery" on setuptools documentation page: 2024-05-17T11:39:45,207 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-05-17T11:39:45,208 If you don't want 'multiqc.modules.somalier' to be distributed and are 2024-05-17T11:39:45,209 already explicitly excluding 'multiqc.modules.somalier' via 2024-05-17T11:39:45,210 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-05-17T11:39:45,210 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-05-17T11:39:45,211 combination with a more fine grained `package-data` configuration. 2024-05-17T11:39:45,212 You can read more about "package data files" on setuptools documentation page: 2024-05-17T11:39:45,213 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-05-17T11:39:45,214 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-05-17T11:39:45,215 even if it does not contain any `.py` files. 2024-05-17T11:39:45,215 On the other hand, currently there is no concept of package data 2024-05-17T11:39:45,216 directory, all directories are treated like packages. 2024-05-17T11:39:45,216 ******************************************************************************** 2024-05-17T11:39:45,217 !! 2024-05-17T11:39:45,217 check.warn(importable) 2024-05-17T11:39:45,218 /tmp/pip-build-env-u8mgr1go/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'multiqc.modules.sortmerna' is absent from the `packages` configuration. 2024-05-17T11:39:45,218 !! 2024-05-17T11:39:45,219 ******************************************************************************** 2024-05-17T11:39:45,220 ############################ 2024-05-17T11:39:45,220 # Package would be ignored # 2024-05-17T11:39:45,221 ############################ 2024-05-17T11:39:45,221 Python recognizes 'multiqc.modules.sortmerna' as an importable package[^1], 2024-05-17T11:39:45,222 but it is absent from setuptools' `packages` configuration. 2024-05-17T11:39:45,223 This leads to an ambiguous overall configuration. If you want to distribute this 2024-05-17T11:39:45,224 package, please make sure that 'multiqc.modules.sortmerna' is explicitly added 2024-05-17T11:39:45,224 to the `packages` configuration field. 2024-05-17T11:39:45,226 Alternatively, you can also rely on setuptools' discovery methods 2024-05-17T11:39:45,226 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-05-17T11:39:45,227 instead of `find_packages(...)`/`find:`). 2024-05-17T11:39:45,228 You can read more about "package discovery" on setuptools documentation page: 2024-05-17T11:39:45,229 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-05-17T11:39:45,231 If you don't want 'multiqc.modules.sortmerna' to be distributed and are 2024-05-17T11:39:45,231 already explicitly excluding 'multiqc.modules.sortmerna' via 2024-05-17T11:39:45,232 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-05-17T11:39:45,232 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-05-17T11:39:45,233 combination with a more fine grained `package-data` configuration. 2024-05-17T11:39:45,234 You can read more about "package data files" on setuptools documentation page: 2024-05-17T11:39:45,236 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-05-17T11:39:45,237 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-05-17T11:39:45,238 even if it does not contain any `.py` files. 2024-05-17T11:39:45,238 On the other hand, currently there is no concept of package data 2024-05-17T11:39:45,239 directory, all directories are treated like packages. 2024-05-17T11:39:45,239 ******************************************************************************** 2024-05-17T11:39:45,241 !! 2024-05-17T11:39:45,241 check.warn(importable) 2024-05-17T11:39:45,242 /tmp/pip-build-env-u8mgr1go/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'multiqc.modules.sourmash' is absent from the `packages` configuration. 2024-05-17T11:39:45,242 !! 2024-05-17T11:39:45,244 ******************************************************************************** 2024-05-17T11:39:45,244 ############################ 2024-05-17T11:39:45,244 # Package would be ignored # 2024-05-17T11:39:45,245 ############################ 2024-05-17T11:39:45,245 Python recognizes 'multiqc.modules.sourmash' as an importable package[^1], 2024-05-17T11:39:45,246 but it is absent from setuptools' `packages` configuration. 2024-05-17T11:39:45,246 This leads to an ambiguous overall configuration. If you want to distribute this 2024-05-17T11:39:45,247 package, please make sure that 'multiqc.modules.sourmash' is explicitly added 2024-05-17T11:39:45,247 to the `packages` configuration field. 2024-05-17T11:39:45,248 Alternatively, you can also rely on setuptools' discovery methods 2024-05-17T11:39:45,248 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-05-17T11:39:45,248 instead of `find_packages(...)`/`find:`). 2024-05-17T11:39:45,249 You can read more about "package discovery" on setuptools documentation page: 2024-05-17T11:39:45,250 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-05-17T11:39:45,250 If you don't want 'multiqc.modules.sourmash' to be distributed and are 2024-05-17T11:39:45,251 already explicitly excluding 'multiqc.modules.sourmash' via 2024-05-17T11:39:45,251 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-05-17T11:39:45,251 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-05-17T11:39:45,252 combination with a more fine grained `package-data` configuration. 2024-05-17T11:39:45,253 You can read more about "package data files" on setuptools documentation page: 2024-05-17T11:39:45,254 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-05-17T11:39:45,256 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-05-17T11:39:45,256 even if it does not contain any `.py` files. 2024-05-17T11:39:45,257 On the other hand, currently there is no concept of package data 2024-05-17T11:39:45,257 directory, all directories are treated like packages. 2024-05-17T11:39:45,258 ******************************************************************************** 2024-05-17T11:39:45,259 !! 2024-05-17T11:39:45,259 check.warn(importable) 2024-05-17T11:39:45,260 /tmp/pip-build-env-u8mgr1go/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'multiqc.modules.spaceranger' is absent from the `packages` configuration. 2024-05-17T11:39:45,260 !! 2024-05-17T11:39:45,261 ******************************************************************************** 2024-05-17T11:39:45,262 ############################ 2024-05-17T11:39:45,262 # Package would be ignored # 2024-05-17T11:39:45,263 ############################ 2024-05-17T11:39:45,263 Python recognizes 'multiqc.modules.spaceranger' as an importable package[^1], 2024-05-17T11:39:45,264 but it is absent from setuptools' `packages` configuration. 2024-05-17T11:39:45,265 This leads to an ambiguous overall configuration. If you want to distribute this 2024-05-17T11:39:45,265 package, please make sure that 'multiqc.modules.spaceranger' is explicitly added 2024-05-17T11:39:45,266 to the `packages` configuration field. 2024-05-17T11:39:45,267 Alternatively, you can also rely on setuptools' discovery methods 2024-05-17T11:39:45,267 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-05-17T11:39:45,268 instead of `find_packages(...)`/`find:`). 2024-05-17T11:39:45,269 You can read more about "package discovery" on setuptools documentation page: 2024-05-17T11:39:45,270 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-05-17T11:39:45,270 If you don't want 'multiqc.modules.spaceranger' to be distributed and are 2024-05-17T11:39:45,271 already explicitly excluding 'multiqc.modules.spaceranger' via 2024-05-17T11:39:45,271 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-05-17T11:39:45,271 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-05-17T11:39:45,272 combination with a more fine grained `package-data` configuration. 2024-05-17T11:39:45,272 You can read more about "package data files" on setuptools documentation page: 2024-05-17T11:39:45,273 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-05-17T11:39:45,274 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-05-17T11:39:45,275 even if it does not contain any `.py` files. 2024-05-17T11:39:45,275 On the other hand, currently there is no concept of package data 2024-05-17T11:39:45,276 directory, all directories are treated like packages. 2024-05-17T11:39:45,276 ******************************************************************************** 2024-05-17T11:39:45,277 !! 2024-05-17T11:39:45,277 check.warn(importable) 2024-05-17T11:39:45,278 /tmp/pip-build-env-u8mgr1go/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'multiqc.modules.stacks' is absent from the `packages` configuration. 2024-05-17T11:39:45,278 !! 2024-05-17T11:39:45,279 ******************************************************************************** 2024-05-17T11:39:45,280 ############################ 2024-05-17T11:39:45,280 # Package would be ignored # 2024-05-17T11:39:45,281 ############################ 2024-05-17T11:39:45,281 Python recognizes 'multiqc.modules.stacks' as an importable package[^1], 2024-05-17T11:39:45,282 but it is absent from setuptools' `packages` configuration. 2024-05-17T11:39:45,283 This leads to an ambiguous overall configuration. If you want to distribute this 2024-05-17T11:39:45,283 package, please make sure that 'multiqc.modules.stacks' is explicitly added 2024-05-17T11:39:45,284 to the `packages` configuration field. 2024-05-17T11:39:45,285 Alternatively, you can also rely on setuptools' discovery methods 2024-05-17T11:39:45,285 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-05-17T11:39:45,286 instead of `find_packages(...)`/`find:`). 2024-05-17T11:39:45,287 You can read more about "package discovery" on setuptools documentation page: 2024-05-17T11:39:45,288 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-05-17T11:39:45,289 If you don't want 'multiqc.modules.stacks' to be distributed and are 2024-05-17T11:39:45,289 already explicitly excluding 'multiqc.modules.stacks' via 2024-05-17T11:39:45,290 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-05-17T11:39:45,290 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-05-17T11:39:45,291 combination with a more fine grained `package-data` configuration. 2024-05-17T11:39:45,292 You can read more about "package data files" on setuptools documentation page: 2024-05-17T11:39:45,293 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-05-17T11:39:45,294 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-05-17T11:39:45,295 even if it does not contain any `.py` files. 2024-05-17T11:39:45,296 On the other hand, currently there is no concept of package data 2024-05-17T11:39:45,296 directory, all directories are treated like packages. 2024-05-17T11:39:45,297 ******************************************************************************** 2024-05-17T11:39:45,298 !! 2024-05-17T11:39:45,298 check.warn(importable) 2024-05-17T11:39:45,299 /tmp/pip-build-env-u8mgr1go/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'multiqc.modules.star' is absent from the `packages` configuration. 2024-05-17T11:39:45,299 !! 2024-05-17T11:39:45,300 ******************************************************************************** 2024-05-17T11:39:45,300 ############################ 2024-05-17T11:39:45,300 # Package would be ignored # 2024-05-17T11:39:45,301 ############################ 2024-05-17T11:39:45,301 Python recognizes 'multiqc.modules.star' as an importable package[^1], 2024-05-17T11:39:45,301 but it is absent from setuptools' `packages` configuration. 2024-05-17T11:39:45,302 This leads to an ambiguous overall configuration. If you want to distribute this 2024-05-17T11:39:45,302 package, please make sure that 'multiqc.modules.star' is explicitly added 2024-05-17T11:39:45,303 to the `packages` configuration field. 2024-05-17T11:39:45,303 Alternatively, you can also rely on setuptools' discovery methods 2024-05-17T11:39:45,304 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-05-17T11:39:45,304 instead of `find_packages(...)`/`find:`). 2024-05-17T11:39:45,305 You can read more about "package discovery" on setuptools documentation page: 2024-05-17T11:39:45,306 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-05-17T11:39:45,307 If you don't want 'multiqc.modules.star' to be distributed and are 2024-05-17T11:39:45,308 already explicitly excluding 'multiqc.modules.star' via 2024-05-17T11:39:45,308 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-05-17T11:39:45,309 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-05-17T11:39:45,309 combination with a more fine grained `package-data` configuration. 2024-05-17T11:39:45,310 You can read more about "package data files" on setuptools documentation page: 2024-05-17T11:39:45,312 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-05-17T11:39:45,314 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-05-17T11:39:45,315 even if it does not contain any `.py` files. 2024-05-17T11:39:45,316 On the other hand, currently there is no concept of package data 2024-05-17T11:39:45,316 directory, all directories are treated like packages. 2024-05-17T11:39:45,317 ******************************************************************************** 2024-05-17T11:39:45,318 !! 2024-05-17T11:39:45,318 check.warn(importable) 2024-05-17T11:39:45,319 /tmp/pip-build-env-u8mgr1go/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'multiqc.modules.supernova' is absent from the `packages` configuration. 2024-05-17T11:39:45,320 !! 2024-05-17T11:39:45,321 ******************************************************************************** 2024-05-17T11:39:45,321 ############################ 2024-05-17T11:39:45,322 # Package would be ignored # 2024-05-17T11:39:45,323 ############################ 2024-05-17T11:39:45,324 Python recognizes 'multiqc.modules.supernova' as an importable package[^1], 2024-05-17T11:39:45,324 but it is absent from setuptools' `packages` configuration. 2024-05-17T11:39:45,326 This leads to an ambiguous overall configuration. If you want to distribute this 2024-05-17T11:39:45,327 package, please make sure that 'multiqc.modules.supernova' is explicitly added 2024-05-17T11:39:45,327 to the `packages` configuration field. 2024-05-17T11:39:45,330 Alternatively, you can also rely on setuptools' discovery methods 2024-05-17T11:39:45,330 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-05-17T11:39:45,331 instead of `find_packages(...)`/`find:`). 2024-05-17T11:39:45,331 You can read more about "package discovery" on setuptools documentation page: 2024-05-17T11:39:45,332 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-05-17T11:39:45,333 If you don't want 'multiqc.modules.supernova' to be distributed and are 2024-05-17T11:39:45,333 already explicitly excluding 'multiqc.modules.supernova' via 2024-05-17T11:39:45,334 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-05-17T11:39:45,334 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-05-17T11:39:45,335 combination with a more fine grained `package-data` configuration. 2024-05-17T11:39:45,335 You can read more about "package data files" on setuptools documentation page: 2024-05-17T11:39:45,336 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-05-17T11:39:45,337 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-05-17T11:39:45,338 even if it does not contain any `.py` files. 2024-05-17T11:39:45,338 On the other hand, currently there is no concept of package data 2024-05-17T11:39:45,338 directory, all directories are treated like packages. 2024-05-17T11:39:45,339 ******************************************************************************** 2024-05-17T11:39:45,340 !! 2024-05-17T11:39:45,340 check.warn(importable) 2024-05-17T11:39:45,341 /tmp/pip-build-env-u8mgr1go/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'multiqc.modules.theta2' is absent from the `packages` configuration. 2024-05-17T11:39:45,341 !! 2024-05-17T11:39:45,342 ******************************************************************************** 2024-05-17T11:39:45,343 ############################ 2024-05-17T11:39:45,344 # Package would be ignored # 2024-05-17T11:39:45,344 ############################ 2024-05-17T11:39:45,345 Python recognizes 'multiqc.modules.theta2' as an importable package[^1], 2024-05-17T11:39:45,345 but it is absent from setuptools' `packages` configuration. 2024-05-17T11:39:45,346 This leads to an ambiguous overall configuration. If you want to distribute this 2024-05-17T11:39:45,347 package, please make sure that 'multiqc.modules.theta2' is explicitly added 2024-05-17T11:39:45,348 to the `packages` configuration field. 2024-05-17T11:39:45,349 Alternatively, you can also rely on setuptools' discovery methods 2024-05-17T11:39:45,349 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-05-17T11:39:45,350 instead of `find_packages(...)`/`find:`). 2024-05-17T11:39:45,351 You can read more about "package discovery" on setuptools documentation page: 2024-05-17T11:39:45,352 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-05-17T11:39:45,353 If you don't want 'multiqc.modules.theta2' to be distributed and are 2024-05-17T11:39:45,354 already explicitly excluding 'multiqc.modules.theta2' via 2024-05-17T11:39:45,354 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-05-17T11:39:45,355 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-05-17T11:39:45,355 combination with a more fine grained `package-data` configuration. 2024-05-17T11:39:45,357 You can read more about "package data files" on setuptools documentation page: 2024-05-17T11:39:45,358 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-05-17T11:39:45,359 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-05-17T11:39:45,360 even if it does not contain any `.py` files. 2024-05-17T11:39:45,360 On the other hand, currently there is no concept of package data 2024-05-17T11:39:45,360 directory, all directories are treated like packages. 2024-05-17T11:39:45,361 ******************************************************************************** 2024-05-17T11:39:45,362 !! 2024-05-17T11:39:45,362 check.warn(importable) 2024-05-17T11:39:45,363 /tmp/pip-build-env-u8mgr1go/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'multiqc.modules.tophat' is absent from the `packages` configuration. 2024-05-17T11:39:45,363 !! 2024-05-17T11:39:45,364 ******************************************************************************** 2024-05-17T11:39:45,365 ############################ 2024-05-17T11:39:45,365 # Package would be ignored # 2024-05-17T11:39:45,366 ############################ 2024-05-17T11:39:45,366 Python recognizes 'multiqc.modules.tophat' as an importable package[^1], 2024-05-17T11:39:45,367 but it is absent from setuptools' `packages` configuration. 2024-05-17T11:39:45,368 This leads to an ambiguous overall configuration. If you want to distribute this 2024-05-17T11:39:45,369 package, please make sure that 'multiqc.modules.tophat' is explicitly added 2024-05-17T11:39:45,369 to the `packages` configuration field. 2024-05-17T11:39:45,370 Alternatively, you can also rely on setuptools' discovery methods 2024-05-17T11:39:45,371 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-05-17T11:39:45,371 instead of `find_packages(...)`/`find:`). 2024-05-17T11:39:45,372 You can read more about "package discovery" on setuptools documentation page: 2024-05-17T11:39:45,373 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-05-17T11:39:45,374 If you don't want 'multiqc.modules.tophat' to be distributed and are 2024-05-17T11:39:45,375 already explicitly excluding 'multiqc.modules.tophat' via 2024-05-17T11:39:45,376 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-05-17T11:39:45,376 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-05-17T11:39:45,377 combination with a more fine grained `package-data` configuration. 2024-05-17T11:39:45,378 You can read more about "package data files" on setuptools documentation page: 2024-05-17T11:39:45,380 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-05-17T11:39:45,382 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-05-17T11:39:45,383 even if it does not contain any `.py` files. 2024-05-17T11:39:45,383 On the other hand, currently there is no concept of package data 2024-05-17T11:39:45,384 directory, all directories are treated like packages. 2024-05-17T11:39:45,385 ******************************************************************************** 2024-05-17T11:39:45,387 !! 2024-05-17T11:39:45,387 check.warn(importable) 2024-05-17T11:39:45,388 /tmp/pip-build-env-u8mgr1go/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'multiqc.modules.trimmomatic' is absent from the `packages` configuration. 2024-05-17T11:39:45,389 !! 2024-05-17T11:39:45,391 ******************************************************************************** 2024-05-17T11:39:45,392 ############################ 2024-05-17T11:39:45,392 # Package would be ignored # 2024-05-17T11:39:45,393 ############################ 2024-05-17T11:39:45,394 Python recognizes 'multiqc.modules.trimmomatic' as an importable package[^1], 2024-05-17T11:39:45,395 but it is absent from setuptools' `packages` configuration. 2024-05-17T11:39:45,396 This leads to an ambiguous overall configuration. If you want to distribute this 2024-05-17T11:39:45,396 package, please make sure that 'multiqc.modules.trimmomatic' is explicitly added 2024-05-17T11:39:45,397 to the `packages` configuration field. 2024-05-17T11:39:45,398 Alternatively, you can also rely on setuptools' discovery methods 2024-05-17T11:39:45,398 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-05-17T11:39:45,399 instead of `find_packages(...)`/`find:`). 2024-05-17T11:39:45,400 You can read more about "package discovery" on setuptools documentation page: 2024-05-17T11:39:45,401 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-05-17T11:39:45,401 If you don't want 'multiqc.modules.trimmomatic' to be distributed and are 2024-05-17T11:39:45,402 already explicitly excluding 'multiqc.modules.trimmomatic' via 2024-05-17T11:39:45,402 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-05-17T11:39:45,403 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-05-17T11:39:45,403 combination with a more fine grained `package-data` configuration. 2024-05-17T11:39:45,404 You can read more about "package data files" on setuptools documentation page: 2024-05-17T11:39:45,405 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-05-17T11:39:45,407 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-05-17T11:39:45,408 even if it does not contain any `.py` files. 2024-05-17T11:39:45,408 On the other hand, currently there is no concept of package data 2024-05-17T11:39:45,409 directory, all directories are treated like packages. 2024-05-17T11:39:45,410 ******************************************************************************** 2024-05-17T11:39:45,412 !! 2024-05-17T11:39:45,412 check.warn(importable) 2024-05-17T11:39:45,413 /tmp/pip-build-env-u8mgr1go/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'multiqc.modules.truvari' is absent from the `packages` configuration. 2024-05-17T11:39:45,413 !! 2024-05-17T11:39:45,415 ******************************************************************************** 2024-05-17T11:39:45,415 ############################ 2024-05-17T11:39:45,416 # Package would be ignored # 2024-05-17T11:39:45,416 ############################ 2024-05-17T11:39:45,417 Python recognizes 'multiqc.modules.truvari' as an importable package[^1], 2024-05-17T11:39:45,417 but it is absent from setuptools' `packages` configuration. 2024-05-17T11:39:45,418 This leads to an ambiguous overall configuration. If you want to distribute this 2024-05-17T11:39:45,418 package, please make sure that 'multiqc.modules.truvari' is explicitly added 2024-05-17T11:39:45,419 to the `packages` configuration field. 2024-05-17T11:39:45,420 Alternatively, you can also rely on setuptools' discovery methods 2024-05-17T11:39:45,420 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-05-17T11:39:45,421 instead of `find_packages(...)`/`find:`). 2024-05-17T11:39:45,422 You can read more about "package discovery" on setuptools documentation page: 2024-05-17T11:39:45,423 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-05-17T11:39:45,424 If you don't want 'multiqc.modules.truvari' to be distributed and are 2024-05-17T11:39:45,424 already explicitly excluding 'multiqc.modules.truvari' via 2024-05-17T11:39:45,425 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-05-17T11:39:45,426 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-05-17T11:39:45,426 combination with a more fine grained `package-data` configuration. 2024-05-17T11:39:45,427 You can read more about "package data files" on setuptools documentation page: 2024-05-17T11:39:45,428 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-05-17T11:39:45,429 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-05-17T11:39:45,430 even if it does not contain any `.py` files. 2024-05-17T11:39:45,430 On the other hand, currently there is no concept of package data 2024-05-17T11:39:45,431 directory, all directories are treated like packages. 2024-05-17T11:39:45,431 ******************************************************************************** 2024-05-17T11:39:45,432 !! 2024-05-17T11:39:45,433 check.warn(importable) 2024-05-17T11:39:45,434 /tmp/pip-build-env-u8mgr1go/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'multiqc.modules.umitools' is absent from the `packages` configuration. 2024-05-17T11:39:45,434 !! 2024-05-17T11:39:45,435 ******************************************************************************** 2024-05-17T11:39:45,436 ############################ 2024-05-17T11:39:45,437 # Package would be ignored # 2024-05-17T11:39:45,437 ############################ 2024-05-17T11:39:45,438 Python recognizes 'multiqc.modules.umitools' as an importable package[^1], 2024-05-17T11:39:45,438 but it is absent from setuptools' `packages` configuration. 2024-05-17T11:39:45,439 This leads to an ambiguous overall configuration. If you want to distribute this 2024-05-17T11:39:45,440 package, please make sure that 'multiqc.modules.umitools' is explicitly added 2024-05-17T11:39:45,441 to the `packages` configuration field. 2024-05-17T11:39:45,442 Alternatively, you can also rely on setuptools' discovery methods 2024-05-17T11:39:45,443 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-05-17T11:39:45,443 instead of `find_packages(...)`/`find:`). 2024-05-17T11:39:45,445 You can read more about "package discovery" on setuptools documentation page: 2024-05-17T11:39:45,446 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-05-17T11:39:45,447 If you don't want 'multiqc.modules.umitools' to be distributed and are 2024-05-17T11:39:45,448 already explicitly excluding 'multiqc.modules.umitools' via 2024-05-17T11:39:45,448 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-05-17T11:39:45,449 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-05-17T11:39:45,449 combination with a more fine grained `package-data` configuration. 2024-05-17T11:39:45,450 You can read more about "package data files" on setuptools documentation page: 2024-05-17T11:39:45,452 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-05-17T11:39:45,453 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-05-17T11:39:45,454 even if it does not contain any `.py` files. 2024-05-17T11:39:45,454 On the other hand, currently there is no concept of package data 2024-05-17T11:39:45,455 directory, all directories are treated like packages. 2024-05-17T11:39:45,456 ******************************************************************************** 2024-05-17T11:39:45,457 !! 2024-05-17T11:39:45,457 check.warn(importable) 2024-05-17T11:39:45,458 /tmp/pip-build-env-u8mgr1go/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'multiqc.modules.varscan2' is absent from the `packages` configuration. 2024-05-17T11:39:45,459 !! 2024-05-17T11:39:45,460 ******************************************************************************** 2024-05-17T11:39:45,460 ############################ 2024-05-17T11:39:45,461 # Package would be ignored # 2024-05-17T11:39:45,461 ############################ 2024-05-17T11:39:45,461 Python recognizes 'multiqc.modules.varscan2' as an importable package[^1], 2024-05-17T11:39:45,462 but it is absent from setuptools' `packages` configuration. 2024-05-17T11:39:45,462 This leads to an ambiguous overall configuration. If you want to distribute this 2024-05-17T11:39:45,463 package, please make sure that 'multiqc.modules.varscan2' is explicitly added 2024-05-17T11:39:45,463 to the `packages` configuration field. 2024-05-17T11:39:45,464 Alternatively, you can also rely on setuptools' discovery methods 2024-05-17T11:39:45,464 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-05-17T11:39:45,464 instead of `find_packages(...)`/`find:`). 2024-05-17T11:39:45,465 You can read more about "package discovery" on setuptools documentation page: 2024-05-17T11:39:45,466 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-05-17T11:39:45,467 If you don't want 'multiqc.modules.varscan2' to be distributed and are 2024-05-17T11:39:45,468 already explicitly excluding 'multiqc.modules.varscan2' via 2024-05-17T11:39:45,468 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-05-17T11:39:45,469 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-05-17T11:39:45,469 combination with a more fine grained `package-data` configuration. 2024-05-17T11:39:45,470 You can read more about "package data files" on setuptools documentation page: 2024-05-17T11:39:45,471 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-05-17T11:39:45,473 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-05-17T11:39:45,473 even if it does not contain any `.py` files. 2024-05-17T11:39:45,474 On the other hand, currently there is no concept of package data 2024-05-17T11:39:45,474 directory, all directories are treated like packages. 2024-05-17T11:39:45,475 ******************************************************************************** 2024-05-17T11:39:45,476 !! 2024-05-17T11:39:45,476 check.warn(importable) 2024-05-17T11:39:45,477 /tmp/pip-build-env-u8mgr1go/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'multiqc.modules.vcftools' is absent from the `packages` configuration. 2024-05-17T11:39:45,477 !! 2024-05-17T11:39:45,478 ******************************************************************************** 2024-05-17T11:39:45,478 ############################ 2024-05-17T11:39:45,479 # Package would be ignored # 2024-05-17T11:39:45,479 ############################ 2024-05-17T11:39:45,480 Python recognizes 'multiqc.modules.vcftools' as an importable package[^1], 2024-05-17T11:39:45,480 but it is absent from setuptools' `packages` configuration. 2024-05-17T11:39:45,481 This leads to an ambiguous overall configuration. If you want to distribute this 2024-05-17T11:39:45,482 package, please make sure that 'multiqc.modules.vcftools' is explicitly added 2024-05-17T11:39:45,482 to the `packages` configuration field. 2024-05-17T11:39:45,483 Alternatively, you can also rely on setuptools' discovery methods 2024-05-17T11:39:45,484 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-05-17T11:39:45,484 instead of `find_packages(...)`/`find:`). 2024-05-17T11:39:45,486 You can read more about "package discovery" on setuptools documentation page: 2024-05-17T11:39:45,486 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-05-17T11:39:45,487 If you don't want 'multiqc.modules.vcftools' to be distributed and are 2024-05-17T11:39:45,488 already explicitly excluding 'multiqc.modules.vcftools' via 2024-05-17T11:39:45,488 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-05-17T11:39:45,488 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-05-17T11:39:45,489 combination with a more fine grained `package-data` configuration. 2024-05-17T11:39:45,490 You can read more about "package data files" on setuptools documentation page: 2024-05-17T11:39:45,491 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-05-17T11:39:45,492 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-05-17T11:39:45,493 even if it does not contain any `.py` files. 2024-05-17T11:39:45,493 On the other hand, currently there is no concept of package data 2024-05-17T11:39:45,494 directory, all directories are treated like packages. 2024-05-17T11:39:45,494 ******************************************************************************** 2024-05-17T11:39:45,495 !! 2024-05-17T11:39:45,495 check.warn(importable) 2024-05-17T11:39:45,496 /tmp/pip-build-env-u8mgr1go/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'multiqc.modules.vep' is absent from the `packages` configuration. 2024-05-17T11:39:45,496 !! 2024-05-17T11:39:45,498 ******************************************************************************** 2024-05-17T11:39:45,498 ############################ 2024-05-17T11:39:45,499 # Package would be ignored # 2024-05-17T11:39:45,499 ############################ 2024-05-17T11:39:45,500 Python recognizes 'multiqc.modules.vep' as an importable package[^1], 2024-05-17T11:39:45,500 but it is absent from setuptools' `packages` configuration. 2024-05-17T11:39:45,501 This leads to an ambiguous overall configuration. If you want to distribute this 2024-05-17T11:39:45,502 package, please make sure that 'multiqc.modules.vep' is explicitly added 2024-05-17T11:39:45,503 to the `packages` configuration field. 2024-05-17T11:39:45,504 Alternatively, you can also rely on setuptools' discovery methods 2024-05-17T11:39:45,504 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-05-17T11:39:45,505 instead of `find_packages(...)`/`find:`). 2024-05-17T11:39:45,505 You can read more about "package discovery" on setuptools documentation page: 2024-05-17T11:39:45,506 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-05-17T11:39:45,507 If you don't want 'multiqc.modules.vep' to be distributed and are 2024-05-17T11:39:45,508 already explicitly excluding 'multiqc.modules.vep' via 2024-05-17T11:39:45,508 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-05-17T11:39:45,509 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-05-17T11:39:45,509 combination with a more fine grained `package-data` configuration. 2024-05-17T11:39:45,510 You can read more about "package data files" on setuptools documentation page: 2024-05-17T11:39:45,511 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-05-17T11:39:45,513 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-05-17T11:39:45,513 even if it does not contain any `.py` files. 2024-05-17T11:39:45,514 On the other hand, currently there is no concept of package data 2024-05-17T11:39:45,514 directory, all directories are treated like packages. 2024-05-17T11:39:45,515 ******************************************************************************** 2024-05-17T11:39:45,515 !! 2024-05-17T11:39:45,516 check.warn(importable) 2024-05-17T11:39:45,516 /tmp/pip-build-env-u8mgr1go/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'multiqc.modules.verifybamid' is absent from the `packages` configuration. 2024-05-17T11:39:45,517 !! 2024-05-17T11:39:45,517 ******************************************************************************** 2024-05-17T11:39:45,517 ############################ 2024-05-17T11:39:45,518 # Package would be ignored # 2024-05-17T11:39:45,518 ############################ 2024-05-17T11:39:45,519 Python recognizes 'multiqc.modules.verifybamid' as an importable package[^1], 2024-05-17T11:39:45,519 but it is absent from setuptools' `packages` configuration. 2024-05-17T11:39:45,520 This leads to an ambiguous overall configuration. If you want to distribute this 2024-05-17T11:39:45,520 package, please make sure that 'multiqc.modules.verifybamid' is explicitly added 2024-05-17T11:39:45,520 to the `packages` configuration field. 2024-05-17T11:39:45,521 Alternatively, you can also rely on setuptools' discovery methods 2024-05-17T11:39:45,521 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-05-17T11:39:45,522 instead of `find_packages(...)`/`find:`). 2024-05-17T11:39:45,523 You can read more about "package discovery" on setuptools documentation page: 2024-05-17T11:39:45,524 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-05-17T11:39:45,525 If you don't want 'multiqc.modules.verifybamid' to be distributed and are 2024-05-17T11:39:45,526 already explicitly excluding 'multiqc.modules.verifybamid' via 2024-05-17T11:39:45,526 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-05-17T11:39:45,527 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-05-17T11:39:45,528 combination with a more fine grained `package-data` configuration. 2024-05-17T11:39:45,528 You can read more about "package data files" on setuptools documentation page: 2024-05-17T11:39:45,529 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-05-17T11:39:45,531 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-05-17T11:39:45,532 even if it does not contain any `.py` files. 2024-05-17T11:39:45,532 On the other hand, currently there is no concept of package data 2024-05-17T11:39:45,532 directory, all directories are treated like packages. 2024-05-17T11:39:45,533 ******************************************************************************** 2024-05-17T11:39:45,534 !! 2024-05-17T11:39:45,534 check.warn(importable) 2024-05-17T11:39:45,535 /tmp/pip-build-env-u8mgr1go/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'multiqc.modules.whatshap' is absent from the `packages` configuration. 2024-05-17T11:39:45,535 !! 2024-05-17T11:39:45,536 ******************************************************************************** 2024-05-17T11:39:45,537 ############################ 2024-05-17T11:39:45,537 # Package would be ignored # 2024-05-17T11:39:45,538 ############################ 2024-05-17T11:39:45,538 Python recognizes 'multiqc.modules.whatshap' as an importable package[^1], 2024-05-17T11:39:45,539 but it is absent from setuptools' `packages` configuration. 2024-05-17T11:39:45,540 This leads to an ambiguous overall configuration. If you want to distribute this 2024-05-17T11:39:45,540 package, please make sure that 'multiqc.modules.whatshap' is explicitly added 2024-05-17T11:39:45,541 to the `packages` configuration field. 2024-05-17T11:39:45,541 Alternatively, you can also rely on setuptools' discovery methods 2024-05-17T11:39:45,542 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-05-17T11:39:45,542 instead of `find_packages(...)`/`find:`). 2024-05-17T11:39:45,543 You can read more about "package discovery" on setuptools documentation page: 2024-05-17T11:39:45,543 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-05-17T11:39:45,544 If you don't want 'multiqc.modules.whatshap' to be distributed and are 2024-05-17T11:39:45,544 already explicitly excluding 'multiqc.modules.whatshap' via 2024-05-17T11:39:45,545 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-05-17T11:39:45,545 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-05-17T11:39:45,545 combination with a more fine grained `package-data` configuration. 2024-05-17T11:39:45,546 You can read more about "package data files" on setuptools documentation page: 2024-05-17T11:39:45,547 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-05-17T11:39:45,548 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-05-17T11:39:45,549 even if it does not contain any `.py` files. 2024-05-17T11:39:45,549 On the other hand, currently there is no concept of package data 2024-05-17T11:39:45,550 directory, all directories are treated like packages. 2024-05-17T11:39:45,550 ******************************************************************************** 2024-05-17T11:39:45,551 !! 2024-05-17T11:39:45,552 check.warn(importable) 2024-05-17T11:39:45,552 /tmp/pip-build-env-u8mgr1go/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'multiqc.modules.xengsort' is absent from the `packages` configuration. 2024-05-17T11:39:45,553 !! 2024-05-17T11:39:45,554 ******************************************************************************** 2024-05-17T11:39:45,554 ############################ 2024-05-17T11:39:45,555 # Package would be ignored # 2024-05-17T11:39:45,555 ############################ 2024-05-17T11:39:45,556 Python recognizes 'multiqc.modules.xengsort' as an importable package[^1], 2024-05-17T11:39:45,556 but it is absent from setuptools' `packages` configuration. 2024-05-17T11:39:45,557 This leads to an ambiguous overall configuration. If you want to distribute this 2024-05-17T11:39:45,558 package, please make sure that 'multiqc.modules.xengsort' is explicitly added 2024-05-17T11:39:45,558 to the `packages` configuration field. 2024-05-17T11:39:45,559 Alternatively, you can also rely on setuptools' discovery methods 2024-05-17T11:39:45,560 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-05-17T11:39:45,560 instead of `find_packages(...)`/`find:`). 2024-05-17T11:39:45,561 You can read more about "package discovery" on setuptools documentation page: 2024-05-17T11:39:45,562 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-05-17T11:39:45,563 If you don't want 'multiqc.modules.xengsort' to be distributed and are 2024-05-17T11:39:45,564 already explicitly excluding 'multiqc.modules.xengsort' via 2024-05-17T11:39:45,564 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-05-17T11:39:45,565 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-05-17T11:39:45,566 combination with a more fine grained `package-data` configuration. 2024-05-17T11:39:45,567 You can read more about "package data files" on setuptools documentation page: 2024-05-17T11:39:45,568 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-05-17T11:39:45,569 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-05-17T11:39:45,569 even if it does not contain any `.py` files. 2024-05-17T11:39:45,570 On the other hand, currently there is no concept of package data 2024-05-17T11:39:45,570 directory, all directories are treated like packages. 2024-05-17T11:39:45,570 ******************************************************************************** 2024-05-17T11:39:45,571 !! 2024-05-17T11:39:45,572 check.warn(importable) 2024-05-17T11:39:45,572 /tmp/pip-build-env-u8mgr1go/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'multiqc.modules.xenome' is absent from the `packages` configuration. 2024-05-17T11:39:45,573 !! 2024-05-17T11:39:45,574 ******************************************************************************** 2024-05-17T11:39:45,574 ############################ 2024-05-17T11:39:45,575 # Package would be ignored # 2024-05-17T11:39:45,575 ############################ 2024-05-17T11:39:45,576 Python recognizes 'multiqc.modules.xenome' as an importable package[^1], 2024-05-17T11:39:45,576 but it is absent from setuptools' `packages` configuration. 2024-05-17T11:39:45,577 This leads to an ambiguous overall configuration. If you want to distribute this 2024-05-17T11:39:45,578 package, please make sure that 'multiqc.modules.xenome' is explicitly added 2024-05-17T11:39:45,579 to the `packages` configuration field. 2024-05-17T11:39:45,580 Alternatively, you can also rely on setuptools' discovery methods 2024-05-17T11:39:45,580 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-05-17T11:39:45,581 instead of `find_packages(...)`/`find:`). 2024-05-17T11:39:45,582 You can read more about "package discovery" on setuptools documentation page: 2024-05-17T11:39:45,583 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-05-17T11:39:45,584 If you don't want 'multiqc.modules.xenome' to be distributed and are 2024-05-17T11:39:45,585 already explicitly excluding 'multiqc.modules.xenome' via 2024-05-17T11:39:45,585 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-05-17T11:39:45,586 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-05-17T11:39:45,587 combination with a more fine grained `package-data` configuration. 2024-05-17T11:39:45,588 You can read more about "package data files" on setuptools documentation page: 2024-05-17T11:39:45,589 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-05-17T11:39:45,591 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-05-17T11:39:45,591 even if it does not contain any `.py` files. 2024-05-17T11:39:45,592 On the other hand, currently there is no concept of package data 2024-05-17T11:39:45,592 directory, all directories are treated like packages. 2024-05-17T11:39:45,593 ******************************************************************************** 2024-05-17T11:39:45,594 !! 2024-05-17T11:39:45,595 check.warn(importable) 2024-05-17T11:39:45,595 /tmp/pip-build-env-u8mgr1go/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'multiqc.plots' is absent from the `packages` configuration. 2024-05-17T11:39:45,596 !! 2024-05-17T11:39:45,597 ******************************************************************************** 2024-05-17T11:39:45,598 ############################ 2024-05-17T11:39:45,599 # Package would be ignored # 2024-05-17T11:39:45,599 ############################ 2024-05-17T11:39:45,600 Python recognizes 'multiqc.plots' as an importable package[^1], 2024-05-17T11:39:45,600 but it is absent from setuptools' `packages` configuration. 2024-05-17T11:39:45,601 This leads to an ambiguous overall configuration. If you want to distribute this 2024-05-17T11:39:45,601 package, please make sure that 'multiqc.plots' is explicitly added 2024-05-17T11:39:45,601 to the `packages` configuration field. 2024-05-17T11:39:45,602 Alternatively, you can also rely on setuptools' discovery methods 2024-05-17T11:39:45,603 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-05-17T11:39:45,603 instead of `find_packages(...)`/`find:`). 2024-05-17T11:39:45,604 You can read more about "package discovery" on setuptools documentation page: 2024-05-17T11:39:45,605 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-05-17T11:39:45,606 If you don't want 'multiqc.plots' to be distributed and are 2024-05-17T11:39:45,607 already explicitly excluding 'multiqc.plots' via 2024-05-17T11:39:45,607 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-05-17T11:39:45,608 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-05-17T11:39:45,608 combination with a more fine grained `package-data` configuration. 2024-05-17T11:39:45,609 You can read more about "package data files" on setuptools documentation page: 2024-05-17T11:39:45,610 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-05-17T11:39:45,612 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-05-17T11:39:45,612 even if it does not contain any `.py` files. 2024-05-17T11:39:45,613 On the other hand, currently there is no concept of package data 2024-05-17T11:39:45,613 directory, all directories are treated like packages. 2024-05-17T11:39:45,614 ******************************************************************************** 2024-05-17T11:39:45,615 !! 2024-05-17T11:39:45,615 check.warn(importable) 2024-05-17T11:39:45,616 /tmp/pip-build-env-u8mgr1go/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'multiqc.plots.plotly' is absent from the `packages` configuration. 2024-05-17T11:39:45,617 !! 2024-05-17T11:39:45,618 ******************************************************************************** 2024-05-17T11:39:45,619 ############################ 2024-05-17T11:39:45,619 # Package would be ignored # 2024-05-17T11:39:45,620 ############################ 2024-05-17T11:39:45,621 Python recognizes 'multiqc.plots.plotly' as an importable package[^1], 2024-05-17T11:39:45,622 but it is absent from setuptools' `packages` configuration. 2024-05-17T11:39:45,623 This leads to an ambiguous overall configuration. If you want to distribute this 2024-05-17T11:39:45,624 package, please make sure that 'multiqc.plots.plotly' is explicitly added 2024-05-17T11:39:45,625 to the `packages` configuration field. 2024-05-17T11:39:45,626 Alternatively, you can also rely on setuptools' discovery methods 2024-05-17T11:39:45,627 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-05-17T11:39:45,629 instead of `find_packages(...)`/`find:`). 2024-05-17T11:39:45,631 You can read more about "package discovery" on setuptools documentation page: 2024-05-17T11:39:45,633 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-05-17T11:39:45,635 If you don't want 'multiqc.plots.plotly' to be distributed and are 2024-05-17T11:39:45,636 already explicitly excluding 'multiqc.plots.plotly' via 2024-05-17T11:39:45,636 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-05-17T11:39:45,636 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-05-17T11:39:45,637 combination with a more fine grained `package-data` configuration. 2024-05-17T11:39:45,638 You can read more about "package data files" on setuptools documentation page: 2024-05-17T11:39:45,639 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-05-17T11:39:45,640 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-05-17T11:39:45,641 even if it does not contain any `.py` files. 2024-05-17T11:39:45,641 On the other hand, currently there is no concept of package data 2024-05-17T11:39:45,642 directory, all directories are treated like packages. 2024-05-17T11:39:45,642 ******************************************************************************** 2024-05-17T11:39:45,643 !! 2024-05-17T11:39:45,644 check.warn(importable) 2024-05-17T11:39:45,644 /tmp/pip-build-env-u8mgr1go/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'multiqc.templates' is absent from the `packages` configuration. 2024-05-17T11:39:45,645 !! 2024-05-17T11:39:45,646 ******************************************************************************** 2024-05-17T11:39:45,647 ############################ 2024-05-17T11:39:45,648 # Package would be ignored # 2024-05-17T11:39:45,649 ############################ 2024-05-17T11:39:45,649 Python recognizes 'multiqc.templates' as an importable package[^1], 2024-05-17T11:39:45,650 but it is absent from setuptools' `packages` configuration. 2024-05-17T11:39:45,651 This leads to an ambiguous overall configuration. If you want to distribute this 2024-05-17T11:39:45,652 package, please make sure that 'multiqc.templates' is explicitly added 2024-05-17T11:39:45,652 to the `packages` configuration field. 2024-05-17T11:39:45,653 Alternatively, you can also rely on setuptools' discovery methods 2024-05-17T11:39:45,654 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-05-17T11:39:45,654 instead of `find_packages(...)`/`find:`). 2024-05-17T11:39:45,655 You can read more about "package discovery" on setuptools documentation page: 2024-05-17T11:39:45,656 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-05-17T11:39:45,658 If you don't want 'multiqc.templates' to be distributed and are 2024-05-17T11:39:45,658 already explicitly excluding 'multiqc.templates' via 2024-05-17T11:39:45,659 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-05-17T11:39:45,659 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-05-17T11:39:45,660 combination with a more fine grained `package-data` configuration. 2024-05-17T11:39:45,661 You can read more about "package data files" on setuptools documentation page: 2024-05-17T11:39:45,662 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-05-17T11:39:45,663 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-05-17T11:39:45,664 even if it does not contain any `.py` files. 2024-05-17T11:39:45,664 On the other hand, currently there is no concept of package data 2024-05-17T11:39:45,665 directory, all directories are treated like packages. 2024-05-17T11:39:45,665 ******************************************************************************** 2024-05-17T11:39:45,667 !! 2024-05-17T11:39:45,667 check.warn(importable) 2024-05-17T11:39:45,667 /tmp/pip-build-env-u8mgr1go/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'multiqc.templates.default' is absent from the `packages` configuration. 2024-05-17T11:39:45,668 !! 2024-05-17T11:39:45,669 ******************************************************************************** 2024-05-17T11:39:45,669 ############################ 2024-05-17T11:39:45,669 # Package would be ignored # 2024-05-17T11:39:45,670 ############################ 2024-05-17T11:39:45,670 Python recognizes 'multiqc.templates.default' as an importable package[^1], 2024-05-17T11:39:45,671 but it is absent from setuptools' `packages` configuration. 2024-05-17T11:39:45,672 This leads to an ambiguous overall configuration. If you want to distribute this 2024-05-17T11:39:45,672 package, please make sure that 'multiqc.templates.default' is explicitly added 2024-05-17T11:39:45,672 to the `packages` configuration field. 2024-05-17T11:39:45,673 Alternatively, you can also rely on setuptools' discovery methods 2024-05-17T11:39:45,674 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-05-17T11:39:45,674 instead of `find_packages(...)`/`find:`). 2024-05-17T11:39:45,675 You can read more about "package discovery" on setuptools documentation page: 2024-05-17T11:39:45,676 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-05-17T11:39:45,677 If you don't want 'multiqc.templates.default' to be distributed and are 2024-05-17T11:39:45,678 already explicitly excluding 'multiqc.templates.default' via 2024-05-17T11:39:45,678 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-05-17T11:39:45,679 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-05-17T11:39:45,679 combination with a more fine grained `package-data` configuration. 2024-05-17T11:39:45,680 You can read more about "package data files" on setuptools documentation page: 2024-05-17T11:39:45,681 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-05-17T11:39:45,683 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-05-17T11:39:45,684 even if it does not contain any `.py` files. 2024-05-17T11:39:45,684 On the other hand, currently there is no concept of package data 2024-05-17T11:39:45,684 directory, all directories are treated like packages. 2024-05-17T11:39:45,685 ******************************************************************************** 2024-05-17T11:39:45,686 !! 2024-05-17T11:39:45,687 check.warn(importable) 2024-05-17T11:39:45,687 /tmp/pip-build-env-u8mgr1go/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'multiqc.templates.default.assets.css' is absent from the `packages` configuration. 2024-05-17T11:39:45,688 !! 2024-05-17T11:39:45,689 ******************************************************************************** 2024-05-17T11:39:45,690 ############################ 2024-05-17T11:39:45,690 # Package would be ignored # 2024-05-17T11:39:45,691 ############################ 2024-05-17T11:39:45,692 Python recognizes 'multiqc.templates.default.assets.css' as an importable package[^1], 2024-05-17T11:39:45,692 but it is absent from setuptools' `packages` configuration. 2024-05-17T11:39:45,693 This leads to an ambiguous overall configuration. If you want to distribute this 2024-05-17T11:39:45,694 package, please make sure that 'multiqc.templates.default.assets.css' is explicitly added 2024-05-17T11:39:45,695 to the `packages` configuration field. 2024-05-17T11:39:45,696 Alternatively, you can also rely on setuptools' discovery methods 2024-05-17T11:39:45,696 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-05-17T11:39:45,697 instead of `find_packages(...)`/`find:`). 2024-05-17T11:39:45,698 You can read more about "package discovery" on setuptools documentation page: 2024-05-17T11:39:45,699 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-05-17T11:39:45,700 If you don't want 'multiqc.templates.default.assets.css' to be distributed and are 2024-05-17T11:39:45,700 already explicitly excluding 'multiqc.templates.default.assets.css' via 2024-05-17T11:39:45,701 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-05-17T11:39:45,701 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-05-17T11:39:45,701 combination with a more fine grained `package-data` configuration. 2024-05-17T11:39:45,702 You can read more about "package data files" on setuptools documentation page: 2024-05-17T11:39:45,703 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-05-17T11:39:45,705 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-05-17T11:39:45,705 even if it does not contain any `.py` files. 2024-05-17T11:39:45,706 On the other hand, currently there is no concept of package data 2024-05-17T11:39:45,707 directory, all directories are treated like packages. 2024-05-17T11:39:45,707 ******************************************************************************** 2024-05-17T11:39:45,709 !! 2024-05-17T11:39:45,710 check.warn(importable) 2024-05-17T11:39:45,711 /tmp/pip-build-env-u8mgr1go/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'multiqc.templates.default.assets.fonts' is absent from the `packages` configuration. 2024-05-17T11:39:45,712 !! 2024-05-17T11:39:45,713 ******************************************************************************** 2024-05-17T11:39:45,713 ############################ 2024-05-17T11:39:45,714 # Package would be ignored # 2024-05-17T11:39:45,714 ############################ 2024-05-17T11:39:45,715 Python recognizes 'multiqc.templates.default.assets.fonts' as an importable package[^1], 2024-05-17T11:39:45,716 but it is absent from setuptools' `packages` configuration. 2024-05-17T11:39:45,717 This leads to an ambiguous overall configuration. If you want to distribute this 2024-05-17T11:39:45,718 package, please make sure that 'multiqc.templates.default.assets.fonts' is explicitly added 2024-05-17T11:39:45,718 to the `packages` configuration field. 2024-05-17T11:39:45,719 Alternatively, you can also rely on setuptools' discovery methods 2024-05-17T11:39:45,720 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-05-17T11:39:45,721 instead of `find_packages(...)`/`find:`). 2024-05-17T11:39:45,722 You can read more about "package discovery" on setuptools documentation page: 2024-05-17T11:39:45,724 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-05-17T11:39:45,725 If you don't want 'multiqc.templates.default.assets.fonts' to be distributed and are 2024-05-17T11:39:45,725 already explicitly excluding 'multiqc.templates.default.assets.fonts' via 2024-05-17T11:39:45,726 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-05-17T11:39:45,727 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-05-17T11:39:45,727 combination with a more fine grained `package-data` configuration. 2024-05-17T11:39:45,729 You can read more about "package data files" on setuptools documentation page: 2024-05-17T11:39:45,731 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-05-17T11:39:45,733 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-05-17T11:39:45,733 even if it does not contain any `.py` files. 2024-05-17T11:39:45,734 On the other hand, currently there is no concept of package data 2024-05-17T11:39:45,734 directory, all directories are treated like packages. 2024-05-17T11:39:45,735 ******************************************************************************** 2024-05-17T11:39:45,737 !! 2024-05-17T11:39:45,737 check.warn(importable) 2024-05-17T11:39:45,737 /tmp/pip-build-env-u8mgr1go/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'multiqc.templates.default.assets.img' is absent from the `packages` configuration. 2024-05-17T11:39:45,738 !! 2024-05-17T11:39:45,739 ******************************************************************************** 2024-05-17T11:39:45,739 ############################ 2024-05-17T11:39:45,740 # Package would be ignored # 2024-05-17T11:39:45,740 ############################ 2024-05-17T11:39:45,741 Python recognizes 'multiqc.templates.default.assets.img' as an importable package[^1], 2024-05-17T11:39:45,741 but it is absent from setuptools' `packages` configuration. 2024-05-17T11:39:45,742 This leads to an ambiguous overall configuration. If you want to distribute this 2024-05-17T11:39:45,743 package, please make sure that 'multiqc.templates.default.assets.img' is explicitly added 2024-05-17T11:39:45,743 to the `packages` configuration field. 2024-05-17T11:39:45,745 Alternatively, you can also rely on setuptools' discovery methods 2024-05-17T11:39:45,745 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-05-17T11:39:45,746 instead of `find_packages(...)`/`find:`). 2024-05-17T11:39:45,748 You can read more about "package discovery" on setuptools documentation page: 2024-05-17T11:39:45,749 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-05-17T11:39:45,751 If you don't want 'multiqc.templates.default.assets.img' to be distributed and are 2024-05-17T11:39:45,751 already explicitly excluding 'multiqc.templates.default.assets.img' via 2024-05-17T11:39:45,752 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-05-17T11:39:45,753 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-05-17T11:39:45,754 combination with a more fine grained `package-data` configuration. 2024-05-17T11:39:45,755 You can read more about "package data files" on setuptools documentation page: 2024-05-17T11:39:45,756 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-05-17T11:39:45,758 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-05-17T11:39:45,759 even if it does not contain any `.py` files. 2024-05-17T11:39:45,760 On the other hand, currently there is no concept of package data 2024-05-17T11:39:45,761 directory, all directories are treated like packages. 2024-05-17T11:39:45,762 ******************************************************************************** 2024-05-17T11:39:45,764 !! 2024-05-17T11:39:45,765 check.warn(importable) 2024-05-17T11:39:45,766 /tmp/pip-build-env-u8mgr1go/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'multiqc.templates.default.assets.js' is absent from the `packages` configuration. 2024-05-17T11:39:45,767 !! 2024-05-17T11:39:45,768 ******************************************************************************** 2024-05-17T11:39:45,769 ############################ 2024-05-17T11:39:45,769 # Package would be ignored # 2024-05-17T11:39:45,770 ############################ 2024-05-17T11:39:45,770 Python recognizes 'multiqc.templates.default.assets.js' as an importable package[^1], 2024-05-17T11:39:45,771 but it is absent from setuptools' `packages` configuration. 2024-05-17T11:39:45,772 This leads to an ambiguous overall configuration. If you want to distribute this 2024-05-17T11:39:45,772 package, please make sure that 'multiqc.templates.default.assets.js' is explicitly added 2024-05-17T11:39:45,773 to the `packages` configuration field. 2024-05-17T11:39:45,774 Alternatively, you can also rely on setuptools' discovery methods 2024-05-17T11:39:45,774 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-05-17T11:39:45,774 instead of `find_packages(...)`/`find:`). 2024-05-17T11:39:45,775 You can read more about "package discovery" on setuptools documentation page: 2024-05-17T11:39:45,776 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-05-17T11:39:45,777 If you don't want 'multiqc.templates.default.assets.js' to be distributed and are 2024-05-17T11:39:45,778 already explicitly excluding 'multiqc.templates.default.assets.js' via 2024-05-17T11:39:45,778 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-05-17T11:39:45,779 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-05-17T11:39:45,780 combination with a more fine grained `package-data` configuration. 2024-05-17T11:39:45,781 You can read more about "package data files" on setuptools documentation page: 2024-05-17T11:39:45,782 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-05-17T11:39:45,784 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-05-17T11:39:45,785 even if it does not contain any `.py` files. 2024-05-17T11:39:45,785 On the other hand, currently there is no concept of package data 2024-05-17T11:39:45,786 directory, all directories are treated like packages. 2024-05-17T11:39:45,787 ******************************************************************************** 2024-05-17T11:39:45,788 !! 2024-05-17T11:39:45,789 check.warn(importable) 2024-05-17T11:39:45,790 /tmp/pip-build-env-u8mgr1go/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'multiqc.templates.default.assets.js.packages' is absent from the `packages` configuration. 2024-05-17T11:39:45,790 !! 2024-05-17T11:39:45,794 ******************************************************************************** 2024-05-17T11:39:45,795 ############################ 2024-05-17T11:39:45,796 # Package would be ignored # 2024-05-17T11:39:45,797 ############################ 2024-05-17T11:39:45,798 Python recognizes 'multiqc.templates.default.assets.js.packages' as an importable package[^1], 2024-05-17T11:39:45,798 but it is absent from setuptools' `packages` configuration. 2024-05-17T11:39:45,800 This leads to an ambiguous overall configuration. If you want to distribute this 2024-05-17T11:39:45,801 package, please make sure that 'multiqc.templates.default.assets.js.packages' is explicitly added 2024-05-17T11:39:45,802 to the `packages` configuration field. 2024-05-17T11:39:45,803 Alternatively, you can also rely on setuptools' discovery methods 2024-05-17T11:39:45,804 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-05-17T11:39:45,805 instead of `find_packages(...)`/`find:`). 2024-05-17T11:39:45,807 You can read more about "package discovery" on setuptools documentation page: 2024-05-17T11:39:45,808 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-05-17T11:39:45,810 If you don't want 'multiqc.templates.default.assets.js.packages' to be distributed and are 2024-05-17T11:39:45,811 already explicitly excluding 'multiqc.templates.default.assets.js.packages' via 2024-05-17T11:39:45,812 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-05-17T11:39:45,812 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-05-17T11:39:45,812 combination with a more fine grained `package-data` configuration. 2024-05-17T11:39:45,813 You can read more about "package data files" on setuptools documentation page: 2024-05-17T11:39:45,814 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-05-17T11:39:45,816 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-05-17T11:39:45,816 even if it does not contain any `.py` files. 2024-05-17T11:39:45,817 On the other hand, currently there is no concept of package data 2024-05-17T11:39:45,817 directory, all directories are treated like packages. 2024-05-17T11:39:45,818 ******************************************************************************** 2024-05-17T11:39:45,819 !! 2024-05-17T11:39:45,819 check.warn(importable) 2024-05-17T11:39:45,820 /tmp/pip-build-env-u8mgr1go/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'multiqc.templates.default.assets.js.plots' is absent from the `packages` configuration. 2024-05-17T11:39:45,820 !! 2024-05-17T11:39:45,821 ******************************************************************************** 2024-05-17T11:39:45,822 ############################ 2024-05-17T11:39:45,823 # Package would be ignored # 2024-05-17T11:39:45,824 ############################ 2024-05-17T11:39:45,824 Python recognizes 'multiqc.templates.default.assets.js.plots' as an importable package[^1], 2024-05-17T11:39:45,825 but it is absent from setuptools' `packages` configuration. 2024-05-17T11:39:45,826 This leads to an ambiguous overall configuration. If you want to distribute this 2024-05-17T11:39:45,827 package, please make sure that 'multiqc.templates.default.assets.js.plots' is explicitly added 2024-05-17T11:39:45,827 to the `packages` configuration field. 2024-05-17T11:39:45,830 Alternatively, you can also rely on setuptools' discovery methods 2024-05-17T11:39:45,830 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-05-17T11:39:45,831 instead of `find_packages(...)`/`find:`). 2024-05-17T11:39:45,832 You can read more about "package discovery" on setuptools documentation page: 2024-05-17T11:39:45,833 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-05-17T11:39:45,835 If you don't want 'multiqc.templates.default.assets.js.plots' to be distributed and are 2024-05-17T11:39:45,835 already explicitly excluding 'multiqc.templates.default.assets.js.plots' via 2024-05-17T11:39:45,836 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-05-17T11:39:45,836 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-05-17T11:39:45,837 combination with a more fine grained `package-data` configuration. 2024-05-17T11:39:45,839 You can read more about "package data files" on setuptools documentation page: 2024-05-17T11:39:45,840 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-05-17T11:39:45,843 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-05-17T11:39:45,843 even if it does not contain any `.py` files. 2024-05-17T11:39:45,844 On the other hand, currently there is no concept of package data 2024-05-17T11:39:45,845 directory, all directories are treated like packages. 2024-05-17T11:39:45,847 ******************************************************************************** 2024-05-17T11:39:45,848 !! 2024-05-17T11:39:45,849 check.warn(importable) 2024-05-17T11:39:45,849 /tmp/pip-build-env-u8mgr1go/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'multiqc.templates.gathered' is absent from the `packages` configuration. 2024-05-17T11:39:45,850 !! 2024-05-17T11:39:45,851 ******************************************************************************** 2024-05-17T11:39:45,851 ############################ 2024-05-17T11:39:45,852 # Package would be ignored # 2024-05-17T11:39:45,852 ############################ 2024-05-17T11:39:45,853 Python recognizes 'multiqc.templates.gathered' as an importable package[^1], 2024-05-17T11:39:45,853 but it is absent from setuptools' `packages` configuration. 2024-05-17T11:39:45,855 This leads to an ambiguous overall configuration. If you want to distribute this 2024-05-17T11:39:45,855 package, please make sure that 'multiqc.templates.gathered' is explicitly added 2024-05-17T11:39:45,856 to the `packages` configuration field. 2024-05-17T11:39:45,857 Alternatively, you can also rely on setuptools' discovery methods 2024-05-17T11:39:45,857 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-05-17T11:39:45,857 instead of `find_packages(...)`/`find:`). 2024-05-17T11:39:45,858 You can read more about "package discovery" on setuptools documentation page: 2024-05-17T11:39:45,859 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-05-17T11:39:45,860 If you don't want 'multiqc.templates.gathered' to be distributed and are 2024-05-17T11:39:45,861 already explicitly excluding 'multiqc.templates.gathered' via 2024-05-17T11:39:45,861 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-05-17T11:39:45,862 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-05-17T11:39:45,862 combination with a more fine grained `package-data` configuration. 2024-05-17T11:39:45,863 You can read more about "package data files" on setuptools documentation page: 2024-05-17T11:39:45,864 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-05-17T11:39:45,866 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-05-17T11:39:45,866 even if it does not contain any `.py` files. 2024-05-17T11:39:45,867 On the other hand, currently there is no concept of package data 2024-05-17T11:39:45,868 directory, all directories are treated like packages. 2024-05-17T11:39:45,868 ******************************************************************************** 2024-05-17T11:39:45,869 !! 2024-05-17T11:39:45,870 check.warn(importable) 2024-05-17T11:39:45,870 /tmp/pip-build-env-u8mgr1go/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'multiqc.templates.geo' is absent from the `packages` configuration. 2024-05-17T11:39:45,871 !! 2024-05-17T11:39:45,872 ******************************************************************************** 2024-05-17T11:39:45,872 ############################ 2024-05-17T11:39:45,873 # Package would be ignored # 2024-05-17T11:39:45,873 ############################ 2024-05-17T11:39:45,874 Python recognizes 'multiqc.templates.geo' as an importable package[^1], 2024-05-17T11:39:45,875 but it is absent from setuptools' `packages` configuration. 2024-05-17T11:39:45,876 This leads to an ambiguous overall configuration. If you want to distribute this 2024-05-17T11:39:45,876 package, please make sure that 'multiqc.templates.geo' is explicitly added 2024-05-17T11:39:45,877 to the `packages` configuration field. 2024-05-17T11:39:45,878 Alternatively, you can also rely on setuptools' discovery methods 2024-05-17T11:39:45,879 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-05-17T11:39:45,880 instead of `find_packages(...)`/`find:`). 2024-05-17T11:39:45,881 You can read more about "package discovery" on setuptools documentation page: 2024-05-17T11:39:45,882 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-05-17T11:39:45,884 If you don't want 'multiqc.templates.geo' to be distributed and are 2024-05-17T11:39:45,884 already explicitly excluding 'multiqc.templates.geo' via 2024-05-17T11:39:45,885 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-05-17T11:39:45,886 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-05-17T11:39:45,887 combination with a more fine grained `package-data` configuration. 2024-05-17T11:39:45,888 You can read more about "package data files" on setuptools documentation page: 2024-05-17T11:39:45,889 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-05-17T11:39:45,890 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-05-17T11:39:45,891 even if it does not contain any `.py` files. 2024-05-17T11:39:45,891 On the other hand, currently there is no concept of package data 2024-05-17T11:39:45,892 directory, all directories are treated like packages. 2024-05-17T11:39:45,892 ******************************************************************************** 2024-05-17T11:39:45,894 !! 2024-05-17T11:39:45,895 check.warn(importable) 2024-05-17T11:39:45,895 /tmp/pip-build-env-u8mgr1go/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'multiqc.templates.geo.assets.css' is absent from the `packages` configuration. 2024-05-17T11:39:45,896 !! 2024-05-17T11:39:45,898 ******************************************************************************** 2024-05-17T11:39:45,899 ############################ 2024-05-17T11:39:45,899 # Package would be ignored # 2024-05-17T11:39:45,900 ############################ 2024-05-17T11:39:45,900 Python recognizes 'multiqc.templates.geo.assets.css' as an importable package[^1], 2024-05-17T11:39:45,901 but it is absent from setuptools' `packages` configuration. 2024-05-17T11:39:45,902 This leads to an ambiguous overall configuration. If you want to distribute this 2024-05-17T11:39:45,903 package, please make sure that 'multiqc.templates.geo.assets.css' is explicitly added 2024-05-17T11:39:45,903 to the `packages` configuration field. 2024-05-17T11:39:45,905 Alternatively, you can also rely on setuptools' discovery methods 2024-05-17T11:39:45,906 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-05-17T11:39:45,907 instead of `find_packages(...)`/`find:`). 2024-05-17T11:39:45,909 You can read more about "package discovery" on setuptools documentation page: 2024-05-17T11:39:45,909 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-05-17T11:39:45,911 If you don't want 'multiqc.templates.geo.assets.css' to be distributed and are 2024-05-17T11:39:45,911 already explicitly excluding 'multiqc.templates.geo.assets.css' via 2024-05-17T11:39:45,912 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-05-17T11:39:45,913 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-05-17T11:39:45,913 combination with a more fine grained `package-data` configuration. 2024-05-17T11:39:45,914 You can read more about "package data files" on setuptools documentation page: 2024-05-17T11:39:45,916 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-05-17T11:39:45,917 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-05-17T11:39:45,918 even if it does not contain any `.py` files. 2024-05-17T11:39:45,918 On the other hand, currently there is no concept of package data 2024-05-17T11:39:45,919 directory, all directories are treated like packages. 2024-05-17T11:39:45,919 ******************************************************************************** 2024-05-17T11:39:45,920 !! 2024-05-17T11:39:45,921 check.warn(importable) 2024-05-17T11:39:45,921 /tmp/pip-build-env-u8mgr1go/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'multiqc.templates.geo.assets.img' is absent from the `packages` configuration. 2024-05-17T11:39:45,922 !! 2024-05-17T11:39:45,923 ******************************************************************************** 2024-05-17T11:39:45,923 ############################ 2024-05-17T11:39:45,924 # Package would be ignored # 2024-05-17T11:39:45,924 ############################ 2024-05-17T11:39:45,925 Python recognizes 'multiqc.templates.geo.assets.img' as an importable package[^1], 2024-05-17T11:39:45,925 but it is absent from setuptools' `packages` configuration. 2024-05-17T11:39:45,926 This leads to an ambiguous overall configuration. If you want to distribute this 2024-05-17T11:39:45,927 package, please make sure that 'multiqc.templates.geo.assets.img' is explicitly added 2024-05-17T11:39:45,927 to the `packages` configuration field. 2024-05-17T11:39:45,928 Alternatively, you can also rely on setuptools' discovery methods 2024-05-17T11:39:45,929 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-05-17T11:39:45,930 instead of `find_packages(...)`/`find:`). 2024-05-17T11:39:45,931 You can read more about "package discovery" on setuptools documentation page: 2024-05-17T11:39:45,932 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-05-17T11:39:45,933 If you don't want 'multiqc.templates.geo.assets.img' to be distributed and are 2024-05-17T11:39:45,933 already explicitly excluding 'multiqc.templates.geo.assets.img' via 2024-05-17T11:39:45,934 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-05-17T11:39:45,934 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-05-17T11:39:45,935 combination with a more fine grained `package-data` configuration. 2024-05-17T11:39:45,936 You can read more about "package data files" on setuptools documentation page: 2024-05-17T11:39:45,937 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-05-17T11:39:45,938 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-05-17T11:39:45,939 even if it does not contain any `.py` files. 2024-05-17T11:39:45,939 On the other hand, currently there is no concept of package data 2024-05-17T11:39:45,940 directory, all directories are treated like packages. 2024-05-17T11:39:45,940 ******************************************************************************** 2024-05-17T11:39:45,942 !! 2024-05-17T11:39:45,942 check.warn(importable) 2024-05-17T11:39:45,943 /tmp/pip-build-env-u8mgr1go/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'multiqc.templates.sections' is absent from the `packages` configuration. 2024-05-17T11:39:45,944 !! 2024-05-17T11:39:45,945 ******************************************************************************** 2024-05-17T11:39:45,946 ############################ 2024-05-17T11:39:45,946 # Package would be ignored # 2024-05-17T11:39:45,948 ############################ 2024-05-17T11:39:45,948 Python recognizes 'multiqc.templates.sections' as an importable package[^1], 2024-05-17T11:39:45,949 but it is absent from setuptools' `packages` configuration. 2024-05-17T11:39:45,950 This leads to an ambiguous overall configuration. If you want to distribute this 2024-05-17T11:39:45,951 package, please make sure that 'multiqc.templates.sections' is explicitly added 2024-05-17T11:39:45,951 to the `packages` configuration field. 2024-05-17T11:39:45,952 Alternatively, you can also rely on setuptools' discovery methods 2024-05-17T11:39:45,953 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-05-17T11:39:45,954 instead of `find_packages(...)`/`find:`). 2024-05-17T11:39:45,955 You can read more about "package discovery" on setuptools documentation page: 2024-05-17T11:39:45,956 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-05-17T11:39:45,957 If you don't want 'multiqc.templates.sections' to be distributed and are 2024-05-17T11:39:45,958 already explicitly excluding 'multiqc.templates.sections' via 2024-05-17T11:39:45,958 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-05-17T11:39:45,959 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-05-17T11:39:45,960 combination with a more fine grained `package-data` configuration. 2024-05-17T11:39:45,961 You can read more about "package data files" on setuptools documentation page: 2024-05-17T11:39:45,962 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-05-17T11:39:45,964 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-05-17T11:39:45,965 even if it does not contain any `.py` files. 2024-05-17T11:39:45,965 On the other hand, currently there is no concept of package data 2024-05-17T11:39:45,966 directory, all directories are treated like packages. 2024-05-17T11:39:45,967 ******************************************************************************** 2024-05-17T11:39:45,968 !! 2024-05-17T11:39:45,969 check.warn(importable) 2024-05-17T11:39:45,969 /tmp/pip-build-env-u8mgr1go/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'multiqc.templates.simple' is absent from the `packages` configuration. 2024-05-17T11:39:45,970 !! 2024-05-17T11:39:45,972 ******************************************************************************** 2024-05-17T11:39:45,972 ############################ 2024-05-17T11:39:45,973 # Package would be ignored # 2024-05-17T11:39:45,973 ############################ 2024-05-17T11:39:45,974 Python recognizes 'multiqc.templates.simple' as an importable package[^1], 2024-05-17T11:39:45,975 but it is absent from setuptools' `packages` configuration. 2024-05-17T11:39:45,976 This leads to an ambiguous overall configuration. If you want to distribute this 2024-05-17T11:39:45,977 package, please make sure that 'multiqc.templates.simple' is explicitly added 2024-05-17T11:39:45,977 to the `packages` configuration field. 2024-05-17T11:39:45,979 Alternatively, you can also rely on setuptools' discovery methods 2024-05-17T11:39:45,979 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-05-17T11:39:45,980 instead of `find_packages(...)`/`find:`). 2024-05-17T11:39:45,982 You can read more about "package discovery" on setuptools documentation page: 2024-05-17T11:39:45,983 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-05-17T11:39:45,985 If you don't want 'multiqc.templates.simple' to be distributed and are 2024-05-17T11:39:45,986 already explicitly excluding 'multiqc.templates.simple' via 2024-05-17T11:39:45,987 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-05-17T11:39:45,988 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-05-17T11:39:45,988 combination with a more fine grained `package-data` configuration. 2024-05-17T11:39:45,990 You can read more about "package data files" on setuptools documentation page: 2024-05-17T11:39:45,991 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-05-17T11:39:45,993 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-05-17T11:39:45,993 even if it does not contain any `.py` files. 2024-05-17T11:39:45,994 On the other hand, currently there is no concept of package data 2024-05-17T11:39:45,994 directory, all directories are treated like packages. 2024-05-17T11:39:45,995 ******************************************************************************** 2024-05-17T11:39:45,996 !! 2024-05-17T11:39:45,997 check.warn(importable) 2024-05-17T11:39:45,998 /tmp/pip-build-env-u8mgr1go/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'multiqc.utils' is absent from the `packages` configuration. 2024-05-17T11:39:45,998 !! 2024-05-17T11:39:46,000 ******************************************************************************** 2024-05-17T11:39:46,000 ############################ 2024-05-17T11:39:46,001 # Package would be ignored # 2024-05-17T11:39:46,002 ############################ 2024-05-17T11:39:46,002 Python recognizes 'multiqc.utils' as an importable package[^1], 2024-05-17T11:39:46,003 but it is absent from setuptools' `packages` configuration. 2024-05-17T11:39:46,005 This leads to an ambiguous overall configuration. If you want to distribute this 2024-05-17T11:39:46,005 package, please make sure that 'multiqc.utils' is explicitly added 2024-05-17T11:39:46,006 to the `packages` configuration field. 2024-05-17T11:39:46,007 Alternatively, you can also rely on setuptools' discovery methods 2024-05-17T11:39:46,008 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-05-17T11:39:46,009 instead of `find_packages(...)`/`find:`). 2024-05-17T11:39:46,010 You can read more about "package discovery" on setuptools documentation page: 2024-05-17T11:39:46,011 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-05-17T11:39:46,013 If you don't want 'multiqc.utils' to be distributed and are 2024-05-17T11:39:46,013 already explicitly excluding 'multiqc.utils' via 2024-05-17T11:39:46,014 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-05-17T11:39:46,015 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-05-17T11:39:46,015 combination with a more fine grained `package-data` configuration. 2024-05-17T11:39:46,017 You can read more about "package data files" on setuptools documentation page: 2024-05-17T11:39:46,018 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-05-17T11:39:46,020 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-05-17T11:39:46,021 even if it does not contain any `.py` files. 2024-05-17T11:39:46,022 On the other hand, currently there is no concept of package data 2024-05-17T11:39:46,022 directory, all directories are treated like packages. 2024-05-17T11:39:46,023 ******************************************************************************** 2024-05-17T11:39:46,024 !! 2024-05-17T11:39:46,025 check.warn(importable) 2024-05-17T11:39:46,026 copying multiqc/config_defaults.yaml -> build/lib/multiqc 2024-05-17T11:39:46,027 copying multiqc/search_patterns.yaml -> build/lib/multiqc 2024-05-17T11:39:46,027 creating build/lib/multiqc/core 2024-05-17T11:39:46,028 copying multiqc/core/__init__.py -> build/lib/multiqc/core 2024-05-17T11:39:46,029 copying multiqc/core/exceptions.py -> build/lib/multiqc/core 2024-05-17T11:39:46,029 copying multiqc/core/exec_modules.py -> build/lib/multiqc/core 2024-05-17T11:39:46,030 copying multiqc/core/file_search.py -> build/lib/multiqc/core 2024-05-17T11:39:46,031 copying multiqc/core/init_log.py -> build/lib/multiqc/core 2024-05-17T11:39:46,031 copying multiqc/core/plugin_hooks.py -> build/lib/multiqc/core 2024-05-17T11:39:46,032 copying multiqc/core/software_versions.py -> build/lib/multiqc/core 2024-05-17T11:39:46,032 copying multiqc/core/strict_helpers.py -> build/lib/multiqc/core 2024-05-17T11:39:46,033 copying multiqc/core/update_config.py -> build/lib/multiqc/core 2024-05-17T11:39:46,034 copying multiqc/core/version_check.py -> build/lib/multiqc/core 2024-05-17T11:39:46,034 copying multiqc/core/write_results.py -> build/lib/multiqc/core 2024-05-17T11:39:46,035 creating build/lib/multiqc/modules 2024-05-17T11:39:46,036 copying multiqc/modules/__init__.py -> build/lib/multiqc/modules 2024-05-17T11:39:46,037 copying multiqc/modules/profile_runtime.py -> build/lib/multiqc/modules 2024-05-17T11:39:46,037 copying multiqc/modules/software_versions.py -> build/lib/multiqc/modules 2024-05-17T11:39:46,038 creating build/lib/multiqc/modules/adapterremoval 2024-05-17T11:39:46,040 copying multiqc/modules/adapterremoval/__init__.py -> build/lib/multiqc/modules/adapterremoval 2024-05-17T11:39:46,041 copying multiqc/modules/adapterremoval/adapterremoval.py -> build/lib/multiqc/modules/adapterremoval 2024-05-17T11:39:46,042 creating build/lib/multiqc/modules/afterqc 2024-05-17T11:39:46,043 copying multiqc/modules/afterqc/__init__.py -> build/lib/multiqc/modules/afterqc 2024-05-17T11:39:46,043 copying multiqc/modules/afterqc/afterqc.py -> build/lib/multiqc/modules/afterqc 2024-05-17T11:39:46,044 creating build/lib/multiqc/modules/anglerfish 2024-05-17T11:39:46,044 copying multiqc/modules/anglerfish/__init__.py -> build/lib/multiqc/modules/anglerfish 2024-05-17T11:39:46,045 copying multiqc/modules/anglerfish/anglerfish.py -> build/lib/multiqc/modules/anglerfish 2024-05-17T11:39:46,046 creating build/lib/multiqc/modules/bakta 2024-05-17T11:39:46,046 copying multiqc/modules/bakta/__init__.py -> build/lib/multiqc/modules/bakta 2024-05-17T11:39:46,047 copying multiqc/modules/bakta/bakta.py -> build/lib/multiqc/modules/bakta 2024-05-17T11:39:46,048 creating build/lib/multiqc/modules/bamdst 2024-05-17T11:39:46,049 copying multiqc/modules/bamdst/__init__.py -> build/lib/multiqc/modules/bamdst 2024-05-17T11:39:46,051 copying multiqc/modules/bamdst/bamdst.py -> build/lib/multiqc/modules/bamdst 2024-05-17T11:39:46,052 creating build/lib/multiqc/modules/bamtools 2024-05-17T11:39:46,052 copying multiqc/modules/bamtools/__init__.py -> build/lib/multiqc/modules/bamtools 2024-05-17T11:39:46,053 copying multiqc/modules/bamtools/bamtools.py -> build/lib/multiqc/modules/bamtools 2024-05-17T11:39:46,054 copying multiqc/modules/bamtools/stats.py -> build/lib/multiqc/modules/bamtools 2024-05-17T11:39:46,055 creating build/lib/multiqc/modules/bbduk 2024-05-17T11:39:46,056 copying multiqc/modules/bbduk/__init__.py -> build/lib/multiqc/modules/bbduk 2024-05-17T11:39:46,057 copying multiqc/modules/bbduk/bbduk.py -> build/lib/multiqc/modules/bbduk 2024-05-17T11:39:46,058 creating build/lib/multiqc/modules/bbmap 2024-05-17T11:39:46,059 copying multiqc/modules/bbmap/__init__.py -> build/lib/multiqc/modules/bbmap 2024-05-17T11:39:46,060 copying multiqc/modules/bbmap/bbmap.py -> build/lib/multiqc/modules/bbmap 2024-05-17T11:39:46,061 copying multiqc/modules/bbmap/bbmap_filetypes.py -> build/lib/multiqc/modules/bbmap 2024-05-17T11:39:46,062 copying multiqc/modules/bbmap/plot_aqhist.py -> build/lib/multiqc/modules/bbmap 2024-05-17T11:39:46,063 copying multiqc/modules/bbmap/plot_basic_hist.py -> build/lib/multiqc/modules/bbmap 2024-05-17T11:39:46,064 copying multiqc/modules/bbmap/plot_bhist.py -> build/lib/multiqc/modules/bbmap 2024-05-17T11:39:46,064 copying multiqc/modules/bbmap/plot_bqhist.py -> build/lib/multiqc/modules/bbmap 2024-05-17T11:39:46,065 copying multiqc/modules/bbmap/plot_covhist.py -> build/lib/multiqc/modules/bbmap 2024-05-17T11:39:46,065 copying multiqc/modules/bbmap/plot_idhist.py -> build/lib/multiqc/modules/bbmap 2024-05-17T11:39:46,066 copying multiqc/modules/bbmap/plot_ihist.py -> build/lib/multiqc/modules/bbmap 2024-05-17T11:39:46,067 copying multiqc/modules/bbmap/plot_indelhist.py -> build/lib/multiqc/modules/bbmap 2024-05-17T11:39:46,068 copying multiqc/modules/bbmap/plot_mhist.py -> build/lib/multiqc/modules/bbmap 2024-05-17T11:39:46,069 copying multiqc/modules/bbmap/plot_qahist.py -> build/lib/multiqc/modules/bbmap 2024-05-17T11:39:46,070 copying multiqc/modules/bbmap/plot_qchist.py -> build/lib/multiqc/modules/bbmap 2024-05-17T11:39:46,070 copying multiqc/modules/bbmap/plot_qhist.py -> build/lib/multiqc/modules/bbmap 2024-05-17T11:39:46,071 creating build/lib/multiqc/modules/bcftools 2024-05-17T11:39:46,072 copying multiqc/modules/bcftools/__init__.py -> build/lib/multiqc/modules/bcftools 2024-05-17T11:39:46,073 copying multiqc/modules/bcftools/bcftools.py -> build/lib/multiqc/modules/bcftools 2024-05-17T11:39:46,074 copying multiqc/modules/bcftools/stats.py -> build/lib/multiqc/modules/bcftools 2024-05-17T11:39:46,074 creating build/lib/multiqc/modules/bcl2fastq 2024-05-17T11:39:46,075 copying multiqc/modules/bcl2fastq/__init__.py -> build/lib/multiqc/modules/bcl2fastq 2024-05-17T11:39:46,076 copying multiqc/modules/bcl2fastq/bcl2fastq.py -> build/lib/multiqc/modules/bcl2fastq 2024-05-17T11:39:46,077 creating build/lib/multiqc/modules/bclconvert 2024-05-17T11:39:46,078 copying multiqc/modules/bclconvert/__init__.py -> build/lib/multiqc/modules/bclconvert 2024-05-17T11:39:46,078 copying multiqc/modules/bclconvert/bclconvert.py -> build/lib/multiqc/modules/bclconvert 2024-05-17T11:39:46,079 creating build/lib/multiqc/modules/biobambam2 2024-05-17T11:39:46,080 copying multiqc/modules/biobambam2/__init__.py -> build/lib/multiqc/modules/biobambam2 2024-05-17T11:39:46,081 copying multiqc/modules/biobambam2/biobambam2.py -> build/lib/multiqc/modules/biobambam2 2024-05-17T11:39:46,082 creating build/lib/multiqc/modules/biobloomtools 2024-05-17T11:39:46,083 copying multiqc/modules/biobloomtools/__init__.py -> build/lib/multiqc/modules/biobloomtools 2024-05-17T11:39:46,084 copying multiqc/modules/biobloomtools/biobloomtools.py -> build/lib/multiqc/modules/biobloomtools 2024-05-17T11:39:46,084 creating build/lib/multiqc/modules/biscuit 2024-05-17T11:39:46,085 copying multiqc/modules/biscuit/__init__.py -> build/lib/multiqc/modules/biscuit 2024-05-17T11:39:46,086 copying multiqc/modules/biscuit/biscuit.py -> build/lib/multiqc/modules/biscuit 2024-05-17T11:39:46,087 creating build/lib/multiqc/modules/bismark 2024-05-17T11:39:46,087 copying multiqc/modules/bismark/__init__.py -> build/lib/multiqc/modules/bismark 2024-05-17T11:39:46,088 copying multiqc/modules/bismark/bismark.py -> build/lib/multiqc/modules/bismark 2024-05-17T11:39:46,088 creating build/lib/multiqc/modules/bowtie1 2024-05-17T11:39:46,089 copying multiqc/modules/bowtie1/__init__.py -> build/lib/multiqc/modules/bowtie1 2024-05-17T11:39:46,090 copying multiqc/modules/bowtie1/bowtie1.py -> build/lib/multiqc/modules/bowtie1 2024-05-17T11:39:46,090 creating build/lib/multiqc/modules/bowtie2 2024-05-17T11:39:46,091 copying multiqc/modules/bowtie2/__init__.py -> build/lib/multiqc/modules/bowtie2 2024-05-17T11:39:46,091 copying multiqc/modules/bowtie2/bowtie2.py -> build/lib/multiqc/modules/bowtie2 2024-05-17T11:39:46,092 creating build/lib/multiqc/modules/bracken 2024-05-17T11:39:46,093 copying multiqc/modules/bracken/__init__.py -> build/lib/multiqc/modules/bracken 2024-05-17T11:39:46,093 copying multiqc/modules/bracken/bracken.py -> build/lib/multiqc/modules/bracken 2024-05-17T11:39:46,094 creating build/lib/multiqc/modules/busco 2024-05-17T11:39:46,094 copying multiqc/modules/busco/__init__.py -> build/lib/multiqc/modules/busco 2024-05-17T11:39:46,095 copying multiqc/modules/busco/busco.py -> build/lib/multiqc/modules/busco 2024-05-17T11:39:46,095 creating build/lib/multiqc/modules/bustools 2024-05-17T11:39:46,096 copying multiqc/modules/bustools/__init__.py -> build/lib/multiqc/modules/bustools 2024-05-17T11:39:46,096 copying multiqc/modules/bustools/bustools.py -> build/lib/multiqc/modules/bustools 2024-05-17T11:39:46,096 creating build/lib/multiqc/modules/ccs 2024-05-17T11:39:46,097 copying multiqc/modules/ccs/__init__.py -> build/lib/multiqc/modules/ccs 2024-05-17T11:39:46,097 copying multiqc/modules/ccs/ccs.py -> build/lib/multiqc/modules/ccs 2024-05-17T11:39:46,098 creating build/lib/multiqc/modules/cellranger 2024-05-17T11:39:46,098 copying multiqc/modules/cellranger/__init__.py -> build/lib/multiqc/modules/cellranger 2024-05-17T11:39:46,098 copying multiqc/modules/cellranger/cellranger.py -> build/lib/multiqc/modules/cellranger 2024-05-17T11:39:46,099 copying multiqc/modules/cellranger/count.py -> build/lib/multiqc/modules/cellranger 2024-05-17T11:39:46,100 copying multiqc/modules/cellranger/utils.py -> build/lib/multiqc/modules/cellranger 2024-05-17T11:39:46,100 copying multiqc/modules/cellranger/vdj.py -> build/lib/multiqc/modules/cellranger 2024-05-17T11:39:46,100 creating build/lib/multiqc/modules/checkqc 2024-05-17T11:39:46,101 copying multiqc/modules/checkqc/__init__.py -> build/lib/multiqc/modules/checkqc 2024-05-17T11:39:46,102 copying multiqc/modules/checkqc/checkqc.py -> build/lib/multiqc/modules/checkqc 2024-05-17T11:39:46,102 creating build/lib/multiqc/modules/clipandmerge 2024-05-17T11:39:46,103 copying multiqc/modules/clipandmerge/__init__.py -> build/lib/multiqc/modules/clipandmerge 2024-05-17T11:39:46,103 copying multiqc/modules/clipandmerge/clipandmerge.py -> build/lib/multiqc/modules/clipandmerge 2024-05-17T11:39:46,104 creating build/lib/multiqc/modules/clusterflow 2024-05-17T11:39:46,104 copying multiqc/modules/clusterflow/__init__.py -> build/lib/multiqc/modules/clusterflow 2024-05-17T11:39:46,105 copying multiqc/modules/clusterflow/clusterflow.py -> build/lib/multiqc/modules/clusterflow 2024-05-17T11:39:46,106 creating build/lib/multiqc/modules/conpair 2024-05-17T11:39:46,106 copying multiqc/modules/conpair/__init__.py -> build/lib/multiqc/modules/conpair 2024-05-17T11:39:46,107 copying multiqc/modules/conpair/conpair.py -> build/lib/multiqc/modules/conpair 2024-05-17T11:39:46,108 creating build/lib/multiqc/modules/custom_content 2024-05-17T11:39:46,108 copying multiqc/modules/custom_content/__init__.py -> build/lib/multiqc/modules/custom_content 2024-05-17T11:39:46,109 copying multiqc/modules/custom_content/custom_content.py -> build/lib/multiqc/modules/custom_content 2024-05-17T11:39:46,109 creating build/lib/multiqc/modules/cutadapt 2024-05-17T11:39:46,110 copying multiqc/modules/cutadapt/__init__.py -> build/lib/multiqc/modules/cutadapt 2024-05-17T11:39:46,110 copying multiqc/modules/cutadapt/cutadapt.py -> build/lib/multiqc/modules/cutadapt 2024-05-17T11:39:46,111 creating build/lib/multiqc/modules/damageprofiler 2024-05-17T11:39:46,112 copying multiqc/modules/damageprofiler/__init__.py -> build/lib/multiqc/modules/damageprofiler 2024-05-17T11:39:46,112 copying multiqc/modules/damageprofiler/damageprofiler.py -> build/lib/multiqc/modules/damageprofiler 2024-05-17T11:39:46,113 creating build/lib/multiqc/modules/dedup 2024-05-17T11:39:46,113 copying multiqc/modules/dedup/__init__.py -> build/lib/multiqc/modules/dedup 2024-05-17T11:39:46,114 copying multiqc/modules/dedup/dedup.py -> build/lib/multiqc/modules/dedup 2024-05-17T11:39:46,114 creating build/lib/multiqc/modules/deeptools 2024-05-17T11:39:46,115 copying multiqc/modules/deeptools/__init__.py -> build/lib/multiqc/modules/deeptools 2024-05-17T11:39:46,115 copying multiqc/modules/deeptools/bamPEFragmentSizeDistribution.py -> build/lib/multiqc/modules/deeptools 2024-05-17T11:39:46,116 copying multiqc/modules/deeptools/bamPEFragmentSizeTable.py -> build/lib/multiqc/modules/deeptools 2024-05-17T11:39:46,117 copying multiqc/modules/deeptools/deeptools.py -> build/lib/multiqc/modules/deeptools 2024-05-17T11:39:46,117 copying multiqc/modules/deeptools/estimateReadFiltering.py -> build/lib/multiqc/modules/deeptools 2024-05-17T11:39:46,117 copying multiqc/modules/deeptools/plotCorrelation.py -> build/lib/multiqc/modules/deeptools 2024-05-17T11:39:46,118 copying multiqc/modules/deeptools/plotCoverage.py -> build/lib/multiqc/modules/deeptools 2024-05-17T11:39:46,118 copying multiqc/modules/deeptools/plotEnrichment.py -> build/lib/multiqc/modules/deeptools 2024-05-17T11:39:46,119 copying multiqc/modules/deeptools/plotFingerprint.py -> build/lib/multiqc/modules/deeptools 2024-05-17T11:39:46,119 copying multiqc/modules/deeptools/plotPCA.py -> build/lib/multiqc/modules/deeptools 2024-05-17T11:39:46,120 copying multiqc/modules/deeptools/plotProfile.py -> build/lib/multiqc/modules/deeptools 2024-05-17T11:39:46,120 creating build/lib/multiqc/modules/diamond 2024-05-17T11:39:46,121 copying multiqc/modules/diamond/__init__.py -> build/lib/multiqc/modules/diamond 2024-05-17T11:39:46,121 copying multiqc/modules/diamond/diamond.py -> build/lib/multiqc/modules/diamond 2024-05-17T11:39:46,122 creating build/lib/multiqc/modules/disambiguate 2024-05-17T11:39:46,122 copying multiqc/modules/disambiguate/__init__.py -> build/lib/multiqc/modules/disambiguate 2024-05-17T11:39:46,123 copying multiqc/modules/disambiguate/disambiguate.py -> build/lib/multiqc/modules/disambiguate 2024-05-17T11:39:46,123 creating build/lib/multiqc/modules/dragen 2024-05-17T11:39:46,124 copying multiqc/modules/dragen/__init__.py -> build/lib/multiqc/modules/dragen 2024-05-17T11:39:46,124 copying multiqc/modules/dragen/coverage_hist.py -> build/lib/multiqc/modules/dragen 2024-05-17T11:39:46,125 copying multiqc/modules/dragen/coverage_metrics.py -> build/lib/multiqc/modules/dragen 2024-05-17T11:39:46,125 copying multiqc/modules/dragen/coverage_per_contig.py -> build/lib/multiqc/modules/dragen 2024-05-17T11:39:46,126 copying multiqc/modules/dragen/dragen.py -> build/lib/multiqc/modules/dragen 2024-05-17T11:39:46,126 copying multiqc/modules/dragen/dragen_gc_metrics.py -> build/lib/multiqc/modules/dragen 2024-05-17T11:39:46,127 copying multiqc/modules/dragen/fragment_length.py -> build/lib/multiqc/modules/dragen 2024-05-17T11:39:46,127 copying multiqc/modules/dragen/mapping_metrics.py -> build/lib/multiqc/modules/dragen 2024-05-17T11:39:46,128 copying multiqc/modules/dragen/overall_mean_cov.py -> build/lib/multiqc/modules/dragen 2024-05-17T11:39:46,128 copying multiqc/modules/dragen/ploidy_estimation_metrics.py -> build/lib/multiqc/modules/dragen 2024-05-17T11:39:46,129 copying multiqc/modules/dragen/rna_quant_metrics.py -> build/lib/multiqc/modules/dragen 2024-05-17T11:39:46,129 copying multiqc/modules/dragen/rna_transcript_cov.py -> build/lib/multiqc/modules/dragen 2024-05-17T11:39:46,130 copying multiqc/modules/dragen/sc_atac_metrics.py -> build/lib/multiqc/modules/dragen 2024-05-17T11:39:46,130 copying multiqc/modules/dragen/sc_rna_metrics.py -> build/lib/multiqc/modules/dragen 2024-05-17T11:39:46,131 copying multiqc/modules/dragen/time_metrics.py -> build/lib/multiqc/modules/dragen 2024-05-17T11:39:46,131 copying multiqc/modules/dragen/trimmer_metrics.py -> build/lib/multiqc/modules/dragen 2024-05-17T11:39:46,132 copying multiqc/modules/dragen/utils.py -> build/lib/multiqc/modules/dragen 2024-05-17T11:39:46,133 copying multiqc/modules/dragen/vc_metrics.py -> build/lib/multiqc/modules/dragen 2024-05-17T11:39:46,133 creating build/lib/multiqc/modules/dragen_fastqc 2024-05-17T11:39:46,134 copying multiqc/modules/dragen_fastqc/__init__.py -> build/lib/multiqc/modules/dragen_fastqc 2024-05-17T11:39:46,134 copying multiqc/modules/dragen_fastqc/base_metrics.py -> build/lib/multiqc/modules/dragen_fastqc 2024-05-17T11:39:46,135 copying multiqc/modules/dragen_fastqc/content_metrics.py -> build/lib/multiqc/modules/dragen_fastqc 2024-05-17T11:39:46,136 copying multiqc/modules/dragen_fastqc/dragen_fastqc.py -> build/lib/multiqc/modules/dragen_fastqc 2024-05-17T11:39:46,136 copying multiqc/modules/dragen_fastqc/gc_metrics.py -> build/lib/multiqc/modules/dragen_fastqc 2024-05-17T11:39:46,137 copying multiqc/modules/dragen_fastqc/read_metrics.py -> build/lib/multiqc/modules/dragen_fastqc 2024-05-17T11:39:46,137 copying multiqc/modules/dragen_fastqc/util.py -> build/lib/multiqc/modules/dragen_fastqc 2024-05-17T11:39:46,137 creating build/lib/multiqc/modules/dragen_fastqc/assets 2024-05-17T11:39:46,138 creating build/lib/multiqc/modules/dragen_fastqc/assets/js 2024-05-17T11:39:46,138 copying multiqc/modules/dragen_fastqc/assets/js/multiqc_dragen_fastqc.js -> build/lib/multiqc/modules/dragen_fastqc/assets/js 2024-05-17T11:39:46,139 creating build/lib/multiqc/modules/eigenstratdatabasetools 2024-05-17T11:39:46,139 copying multiqc/modules/eigenstratdatabasetools/__init__.py -> build/lib/multiqc/modules/eigenstratdatabasetools 2024-05-17T11:39:46,141 copying multiqc/modules/eigenstratdatabasetools/eigenstratdatabasetools.py -> build/lib/multiqc/modules/eigenstratdatabasetools 2024-05-17T11:39:46,143 creating build/lib/multiqc/modules/fastp 2024-05-17T11:39:46,144 copying multiqc/modules/fastp/__init__.py -> build/lib/multiqc/modules/fastp 2024-05-17T11:39:46,147 copying multiqc/modules/fastp/fastp.py -> build/lib/multiqc/modules/fastp 2024-05-17T11:39:46,151 creating build/lib/multiqc/modules/fastq_screen 2024-05-17T11:39:46,152 copying multiqc/modules/fastq_screen/__init__.py -> build/lib/multiqc/modules/fastq_screen 2024-05-17T11:39:46,155 copying multiqc/modules/fastq_screen/fastq_screen.py -> build/lib/multiqc/modules/fastq_screen 2024-05-17T11:39:46,158 creating build/lib/multiqc/modules/fastqc 2024-05-17T11:39:46,159 copying multiqc/modules/fastqc/__init__.py -> build/lib/multiqc/modules/fastqc 2024-05-17T11:39:46,161 copying multiqc/modules/fastqc/fastqc.py -> build/lib/multiqc/modules/fastqc 2024-05-17T11:39:46,166 creating build/lib/multiqc/modules/fastqc/assets 2024-05-17T11:39:46,167 creating build/lib/multiqc/modules/fastqc/assets/css 2024-05-17T11:39:46,168 copying multiqc/modules/fastqc/assets/css/multiqc_fastqc.css -> build/lib/multiqc/modules/fastqc/assets/css 2024-05-17T11:39:46,170 creating build/lib/multiqc/modules/fastqc/assets/js 2024-05-17T11:39:46,171 copying multiqc/modules/fastqc/assets/js/multiqc_fastqc.js -> build/lib/multiqc/modules/fastqc/assets/js 2024-05-17T11:39:46,174 creating build/lib/multiqc/modules/fastqc/fastqc_theoretical_gc 2024-05-17T11:39:46,176 copying multiqc/modules/fastqc/fastqc_theoretical_gc/fastqc_theoretical_gc_hg38_genome.txt -> build/lib/multiqc/modules/fastqc/fastqc_theoretical_gc 2024-05-17T11:39:46,178 copying multiqc/modules/fastqc/fastqc_theoretical_gc/fastqc_theoretical_gc_hg38_txome.txt -> build/lib/multiqc/modules/fastqc/fastqc_theoretical_gc 2024-05-17T11:39:46,180 copying multiqc/modules/fastqc/fastqc_theoretical_gc/fastqc_theoretical_gc_mm10_genome.txt -> build/lib/multiqc/modules/fastqc/fastqc_theoretical_gc 2024-05-17T11:39:46,182 copying multiqc/modules/fastqc/fastqc_theoretical_gc/fastqc_theoretical_gc_mm10_txome.txt -> build/lib/multiqc/modules/fastqc/fastqc_theoretical_gc 2024-05-17T11:39:46,184 creating build/lib/multiqc/modules/featureCounts 2024-05-17T11:39:46,185 copying multiqc/modules/featureCounts/__init__.py -> build/lib/multiqc/modules/featureCounts 2024-05-17T11:39:46,188 copying multiqc/modules/featureCounts/feature_counts.py -> build/lib/multiqc/modules/featureCounts 2024-05-17T11:39:46,191 creating build/lib/multiqc/modules/fgbio 2024-05-17T11:39:46,192 copying multiqc/modules/fgbio/ErrorRateByReadPosition.py -> build/lib/multiqc/modules/fgbio 2024-05-17T11:39:46,195 copying multiqc/modules/fgbio/__init__.py -> build/lib/multiqc/modules/fgbio 2024-05-17T11:39:46,198 copying multiqc/modules/fgbio/fgbio.py -> build/lib/multiqc/modules/fgbio 2024-05-17T11:39:46,200 copying multiqc/modules/fgbio/groupreadsbyumi.py -> build/lib/multiqc/modules/fgbio 2024-05-17T11:39:46,201 creating build/lib/multiqc/modules/filtlong 2024-05-17T11:39:46,202 copying multiqc/modules/filtlong/__init__.py -> build/lib/multiqc/modules/filtlong 2024-05-17T11:39:46,204 copying multiqc/modules/filtlong/filtlong.py -> build/lib/multiqc/modules/filtlong 2024-05-17T11:39:46,206 creating build/lib/multiqc/modules/flash 2024-05-17T11:39:46,207 copying multiqc/modules/flash/__init__.py -> build/lib/multiqc/modules/flash 2024-05-17T11:39:46,209 copying multiqc/modules/flash/flash.py -> build/lib/multiqc/modules/flash 2024-05-17T11:39:46,212 creating build/lib/multiqc/modules/flexbar 2024-05-17T11:39:46,213 copying multiqc/modules/flexbar/__init__.py -> build/lib/multiqc/modules/flexbar 2024-05-17T11:39:46,215 copying multiqc/modules/flexbar/flexbar.py -> build/lib/multiqc/modules/flexbar 2024-05-17T11:39:46,218 creating build/lib/multiqc/modules/freyja 2024-05-17T11:39:46,218 copying multiqc/modules/freyja/__init__.py -> build/lib/multiqc/modules/freyja 2024-05-17T11:39:46,220 copying multiqc/modules/freyja/freyja.py -> build/lib/multiqc/modules/freyja 2024-05-17T11:39:46,223 creating build/lib/multiqc/modules/gatk 2024-05-17T11:39:46,224 copying multiqc/modules/gatk/__init__.py -> build/lib/multiqc/modules/gatk 2024-05-17T11:39:46,226 copying multiqc/modules/gatk/analyze_saturation_mutagenesis.py -> build/lib/multiqc/modules/gatk 2024-05-17T11:39:46,229 copying multiqc/modules/gatk/base_recalibrator.py -> build/lib/multiqc/modules/gatk 2024-05-17T11:39:46,233 copying multiqc/modules/gatk/gatk.py -> build/lib/multiqc/modules/gatk 2024-05-17T11:39:46,236 copying multiqc/modules/gatk/varianteval.py -> build/lib/multiqc/modules/gatk 2024-05-17T11:39:46,240 creating build/lib/multiqc/modules/gffcompare 2024-05-17T11:39:46,242 copying multiqc/modules/gffcompare/__init__.py -> build/lib/multiqc/modules/gffcompare 2024-05-17T11:39:46,247 copying multiqc/modules/gffcompare/gffcompare.py -> build/lib/multiqc/modules/gffcompare 2024-05-17T11:39:46,251 creating build/lib/multiqc/modules/goleft_indexcov 2024-05-17T11:39:46,252 copying multiqc/modules/goleft_indexcov/__init__.py -> build/lib/multiqc/modules/goleft_indexcov 2024-05-17T11:39:46,254 copying multiqc/modules/goleft_indexcov/goleft_indexcov.py -> build/lib/multiqc/modules/goleft_indexcov 2024-05-17T11:39:46,258 creating build/lib/multiqc/modules/gopeaks 2024-05-17T11:39:46,258 copying multiqc/modules/gopeaks/__init__.py -> build/lib/multiqc/modules/gopeaks 2024-05-17T11:39:46,261 copying multiqc/modules/gopeaks/gopeaks.py -> build/lib/multiqc/modules/gopeaks 2024-05-17T11:39:46,263 creating build/lib/multiqc/modules/happy 2024-05-17T11:39:46,264 copying multiqc/modules/happy/__init__.py -> build/lib/multiqc/modules/happy 2024-05-17T11:39:46,266 copying multiqc/modules/happy/happy.py -> build/lib/multiqc/modules/happy 2024-05-17T11:39:46,268 creating build/lib/multiqc/modules/hicexplorer 2024-05-17T11:39:46,269 copying multiqc/modules/hicexplorer/__init__.py -> build/lib/multiqc/modules/hicexplorer 2024-05-17T11:39:46,271 copying multiqc/modules/hicexplorer/hicexplorer.py -> build/lib/multiqc/modules/hicexplorer 2024-05-17T11:39:46,274 creating build/lib/multiqc/modules/hicpro 2024-05-17T11:39:46,275 copying multiqc/modules/hicpro/__init__.py -> build/lib/multiqc/modules/hicpro 2024-05-17T11:39:46,278 copying multiqc/modules/hicpro/hicpro.py -> build/lib/multiqc/modules/hicpro 2024-05-17T11:39:46,281 creating build/lib/multiqc/modules/hicup 2024-05-17T11:39:46,282 copying multiqc/modules/hicup/__init__.py -> build/lib/multiqc/modules/hicup 2024-05-17T11:39:46,284 copying multiqc/modules/hicup/hicup.py -> build/lib/multiqc/modules/hicup 2024-05-17T11:39:46,288 creating build/lib/multiqc/modules/hifiasm 2024-05-17T11:39:46,289 copying multiqc/modules/hifiasm/__init__.py -> build/lib/multiqc/modules/hifiasm 2024-05-17T11:39:46,291 copying multiqc/modules/hifiasm/hifiasm.py -> build/lib/multiqc/modules/hifiasm 2024-05-17T11:39:46,293 creating build/lib/multiqc/modules/hisat2 2024-05-17T11:39:46,294 copying multiqc/modules/hisat2/__init__.py -> build/lib/multiqc/modules/hisat2 2024-05-17T11:39:46,296 copying multiqc/modules/hisat2/hisat2.py -> build/lib/multiqc/modules/hisat2 2024-05-17T11:39:46,298 creating build/lib/multiqc/modules/homer 2024-05-17T11:39:46,299 copying multiqc/modules/homer/__init__.py -> build/lib/multiqc/modules/homer 2024-05-17T11:39:46,301 copying multiqc/modules/homer/findpeaks.py -> build/lib/multiqc/modules/homer 2024-05-17T11:39:46,303 copying multiqc/modules/homer/homer.py -> build/lib/multiqc/modules/homer 2024-05-17T11:39:46,305 copying multiqc/modules/homer/tagdirectory.py -> build/lib/multiqc/modules/homer 2024-05-17T11:39:46,309 creating build/lib/multiqc/modules/hops 2024-05-17T11:39:46,309 copying multiqc/modules/hops/__init__.py -> build/lib/multiqc/modules/hops 2024-05-17T11:39:46,312 copying multiqc/modules/hops/hops.py -> build/lib/multiqc/modules/hops 2024-05-17T11:39:46,315 creating build/lib/multiqc/modules/hostile 2024-05-17T11:39:46,316 copying multiqc/modules/hostile/__init__.py -> build/lib/multiqc/modules/hostile 2024-05-17T11:39:46,319 copying multiqc/modules/hostile/hostile.py -> build/lib/multiqc/modules/hostile 2024-05-17T11:39:46,323 creating build/lib/multiqc/modules/htseq 2024-05-17T11:39:46,325 copying multiqc/modules/htseq/__init__.py -> build/lib/multiqc/modules/htseq 2024-05-17T11:39:46,329 copying multiqc/modules/htseq/htseq.py -> build/lib/multiqc/modules/htseq 2024-05-17T11:39:46,332 creating build/lib/multiqc/modules/humid 2024-05-17T11:39:46,333 copying multiqc/modules/humid/__init__.py -> build/lib/multiqc/modules/humid 2024-05-17T11:39:46,336 copying multiqc/modules/humid/clusters.py -> build/lib/multiqc/modules/humid 2024-05-17T11:39:46,339 copying multiqc/modules/humid/counts.py -> build/lib/multiqc/modules/humid 2024-05-17T11:39:46,341 copying multiqc/modules/humid/humid.py -> build/lib/multiqc/modules/humid 2024-05-17T11:39:46,344 copying multiqc/modules/humid/neighbours.py -> build/lib/multiqc/modules/humid 2024-05-17T11:39:46,346 copying multiqc/modules/humid/stats.py -> build/lib/multiqc/modules/humid 2024-05-17T11:39:46,348 creating build/lib/multiqc/modules/interop 2024-05-17T11:39:46,349 copying multiqc/modules/interop/__init__.py -> build/lib/multiqc/modules/interop 2024-05-17T11:39:46,351 copying multiqc/modules/interop/interop.py -> build/lib/multiqc/modules/interop 2024-05-17T11:39:46,354 creating build/lib/multiqc/modules/isoseq 2024-05-17T11:39:46,355 copying multiqc/modules/isoseq/__init__.py -> build/lib/multiqc/modules/isoseq 2024-05-17T11:39:46,358 copying multiqc/modules/isoseq/isoseq.py -> build/lib/multiqc/modules/isoseq 2024-05-17T11:39:46,360 creating build/lib/multiqc/modules/ivar 2024-05-17T11:39:46,361 copying multiqc/modules/ivar/__init__.py -> build/lib/multiqc/modules/ivar 2024-05-17T11:39:46,364 copying multiqc/modules/ivar/ivar.py -> build/lib/multiqc/modules/ivar 2024-05-17T11:39:46,366 creating build/lib/multiqc/modules/jcvi 2024-05-17T11:39:46,367 copying multiqc/modules/jcvi/__init__.py -> build/lib/multiqc/modules/jcvi 2024-05-17T11:39:46,369 copying multiqc/modules/jcvi/jcvi.py -> build/lib/multiqc/modules/jcvi 2024-05-17T11:39:46,372 creating build/lib/multiqc/modules/jellyfish 2024-05-17T11:39:46,374 copying multiqc/modules/jellyfish/__init__.py -> build/lib/multiqc/modules/jellyfish 2024-05-17T11:39:46,377 copying multiqc/modules/jellyfish/jellyfish.py -> build/lib/multiqc/modules/jellyfish 2024-05-17T11:39:46,380 creating build/lib/multiqc/modules/kaiju 2024-05-17T11:39:46,381 copying multiqc/modules/kaiju/__init__.py -> build/lib/multiqc/modules/kaiju 2024-05-17T11:39:46,383 copying multiqc/modules/kaiju/kaiju.py -> build/lib/multiqc/modules/kaiju 2024-05-17T11:39:46,386 creating build/lib/multiqc/modules/kallisto 2024-05-17T11:39:46,388 copying multiqc/modules/kallisto/__init__.py -> build/lib/multiqc/modules/kallisto 2024-05-17T11:39:46,390 copying multiqc/modules/kallisto/kallisto.py -> build/lib/multiqc/modules/kallisto 2024-05-17T11:39:46,394 creating build/lib/multiqc/modules/kat 2024-05-17T11:39:46,394 copying multiqc/modules/kat/__init__.py -> build/lib/multiqc/modules/kat 2024-05-17T11:39:46,397 copying multiqc/modules/kat/kat.py -> build/lib/multiqc/modules/kat 2024-05-17T11:39:46,399 creating build/lib/multiqc/modules/kraken 2024-05-17T11:39:46,400 copying multiqc/modules/kraken/__init__.py -> build/lib/multiqc/modules/kraken 2024-05-17T11:39:46,402 copying multiqc/modules/kraken/kraken.py -> build/lib/multiqc/modules/kraken 2024-05-17T11:39:46,405 creating build/lib/multiqc/modules/leehom 2024-05-17T11:39:46,406 copying multiqc/modules/leehom/__init__.py -> build/lib/multiqc/modules/leehom 2024-05-17T11:39:46,408 copying multiqc/modules/leehom/leehom.py -> build/lib/multiqc/modules/leehom 2024-05-17T11:39:46,410 creating build/lib/multiqc/modules/librarian 2024-05-17T11:39:46,412 copying multiqc/modules/librarian/__init__.py -> build/lib/multiqc/modules/librarian 2024-05-17T11:39:46,414 copying multiqc/modules/librarian/librarian.py -> build/lib/multiqc/modules/librarian 2024-05-17T11:39:46,417 creating build/lib/multiqc/modules/lima 2024-05-17T11:39:46,418 copying multiqc/modules/lima/__init__.py -> build/lib/multiqc/modules/lima 2024-05-17T11:39:46,421 copying multiqc/modules/lima/lima.py -> build/lib/multiqc/modules/lima 2024-05-17T11:39:46,425 creating build/lib/multiqc/modules/longranger 2024-05-17T11:39:46,426 copying multiqc/modules/longranger/__init__.py -> build/lib/multiqc/modules/longranger 2024-05-17T11:39:46,429 copying multiqc/modules/longranger/longranger.py -> build/lib/multiqc/modules/longranger 2024-05-17T11:39:46,432 creating build/lib/multiqc/modules/macs2 2024-05-17T11:39:46,433 copying multiqc/modules/macs2/__init__.py -> build/lib/multiqc/modules/macs2 2024-05-17T11:39:46,436 copying multiqc/modules/macs2/macs2.py -> build/lib/multiqc/modules/macs2 2024-05-17T11:39:46,438 creating build/lib/multiqc/modules/malt 2024-05-17T11:39:46,439 copying multiqc/modules/malt/__init__.py -> build/lib/multiqc/modules/malt 2024-05-17T11:39:46,441 copying multiqc/modules/malt/malt.py -> build/lib/multiqc/modules/malt 2024-05-17T11:39:46,444 creating build/lib/multiqc/modules/mapdamage 2024-05-17T11:39:46,445 copying multiqc/modules/mapdamage/__init__.py -> build/lib/multiqc/modules/mapdamage 2024-05-17T11:39:46,447 copying multiqc/modules/mapdamage/mapdamage.py -> build/lib/multiqc/modules/mapdamage 2024-05-17T11:39:46,450 creating build/lib/multiqc/modules/megahit 2024-05-17T11:39:46,451 copying multiqc/modules/megahit/__init__.py -> build/lib/multiqc/modules/megahit 2024-05-17T11:39:46,453 copying multiqc/modules/megahit/megahit.py -> build/lib/multiqc/modules/megahit 2024-05-17T11:39:46,456 creating build/lib/multiqc/modules/metaphlan 2024-05-17T11:39:46,457 copying multiqc/modules/metaphlan/__init__.py -> build/lib/multiqc/modules/metaphlan 2024-05-17T11:39:46,459 copying multiqc/modules/metaphlan/metaphlan.py -> build/lib/multiqc/modules/metaphlan 2024-05-17T11:39:46,462 creating build/lib/multiqc/modules/methylqa 2024-05-17T11:39:46,464 copying multiqc/modules/methylqa/__init__.py -> build/lib/multiqc/modules/methylqa 2024-05-17T11:39:46,467 copying multiqc/modules/methylqa/methylqa.py -> build/lib/multiqc/modules/methylqa 2024-05-17T11:39:46,469 creating build/lib/multiqc/modules/minionqc 2024-05-17T11:39:46,471 copying multiqc/modules/minionqc/__init__.py -> build/lib/multiqc/modules/minionqc 2024-05-17T11:39:46,474 copying multiqc/modules/minionqc/minionqc.py -> build/lib/multiqc/modules/minionqc 2024-05-17T11:39:46,477 creating build/lib/multiqc/modules/mirtop 2024-05-17T11:39:46,478 copying multiqc/modules/mirtop/__init__.py -> build/lib/multiqc/modules/mirtop 2024-05-17T11:39:46,480 copying multiqc/modules/mirtop/mirtop.py -> build/lib/multiqc/modules/mirtop 2024-05-17T11:39:46,483 creating build/lib/multiqc/modules/mirtrace 2024-05-17T11:39:46,484 copying multiqc/modules/mirtrace/__init__.py -> build/lib/multiqc/modules/mirtrace 2024-05-17T11:39:46,486 copying multiqc/modules/mirtrace/mirtrace.py -> build/lib/multiqc/modules/mirtrace 2024-05-17T11:39:46,488 creating build/lib/multiqc/modules/mosdepth 2024-05-17T11:39:46,489 copying multiqc/modules/mosdepth/__init__.py -> build/lib/multiqc/modules/mosdepth 2024-05-17T11:39:46,492 copying multiqc/modules/mosdepth/mosdepth.py -> build/lib/multiqc/modules/mosdepth 2024-05-17T11:39:46,495 creating build/lib/multiqc/modules/motus 2024-05-17T11:39:46,496 copying multiqc/modules/motus/__init__.py -> build/lib/multiqc/modules/motus 2024-05-17T11:39:46,498 copying multiqc/modules/motus/motus.py -> build/lib/multiqc/modules/motus 2024-05-17T11:39:46,502 creating build/lib/multiqc/modules/mtnucratio 2024-05-17T11:39:46,504 copying multiqc/modules/mtnucratio/__init__.py -> build/lib/multiqc/modules/mtnucratio 2024-05-17T11:39:46,507 copying multiqc/modules/mtnucratio/mtnucratio.py -> build/lib/multiqc/modules/mtnucratio 2024-05-17T11:39:46,509 creating build/lib/multiqc/modules/multivcfanalyzer 2024-05-17T11:39:46,510 copying multiqc/modules/multivcfanalyzer/__init__.py -> build/lib/multiqc/modules/multivcfanalyzer 2024-05-17T11:39:46,512 copying multiqc/modules/multivcfanalyzer/multivcfanalyzer.py -> build/lib/multiqc/modules/multivcfanalyzer 2024-05-17T11:39:46,514 creating build/lib/multiqc/modules/nanostat 2024-05-17T11:39:46,516 copying multiqc/modules/nanostat/__init__.py -> build/lib/multiqc/modules/nanostat 2024-05-17T11:39:46,518 copying multiqc/modules/nanostat/nanostat.py -> build/lib/multiqc/modules/nanostat 2024-05-17T11:39:46,521 creating build/lib/multiqc/modules/nextclade 2024-05-17T11:39:46,522 copying multiqc/modules/nextclade/__init__.py -> build/lib/multiqc/modules/nextclade 2024-05-17T11:39:46,526 copying multiqc/modules/nextclade/nextclade.py -> build/lib/multiqc/modules/nextclade 2024-05-17T11:39:46,529 creating build/lib/multiqc/modules/ngsderive 2024-05-17T11:39:46,531 copying multiqc/modules/ngsderive/__init__.py -> build/lib/multiqc/modules/ngsderive 2024-05-17T11:39:46,534 copying multiqc/modules/ngsderive/ngsderive.py -> build/lib/multiqc/modules/ngsderive 2024-05-17T11:39:46,537 creating build/lib/multiqc/modules/nonpareil 2024-05-17T11:39:46,538 copying multiqc/modules/nonpareil/__init__.py -> build/lib/multiqc/modules/nonpareil 2024-05-17T11:39:46,540 copying multiqc/modules/nonpareil/nonpareil.py -> build/lib/multiqc/modules/nonpareil 2024-05-17T11:39:46,543 creating build/lib/multiqc/modules/odgi 2024-05-17T11:39:46,544 copying multiqc/modules/odgi/__init__.py -> build/lib/multiqc/modules/odgi 2024-05-17T11:39:46,548 copying multiqc/modules/odgi/odgi.py -> build/lib/multiqc/modules/odgi 2024-05-17T11:39:46,555 creating build/lib/multiqc/modules/optitype 2024-05-17T11:39:46,557 copying multiqc/modules/optitype/__init__.py -> build/lib/multiqc/modules/optitype 2024-05-17T11:39:46,561 copying multiqc/modules/optitype/optitype.py -> build/lib/multiqc/modules/optitype 2024-05-17T11:39:46,566 creating build/lib/multiqc/modules/pangolin 2024-05-17T11:39:46,567 copying multiqc/modules/pangolin/__init__.py -> build/lib/multiqc/modules/pangolin 2024-05-17T11:39:46,570 copying multiqc/modules/pangolin/pangolin.py -> build/lib/multiqc/modules/pangolin 2024-05-17T11:39:46,573 creating build/lib/multiqc/modules/pbmarkdup 2024-05-17T11:39:46,574 copying multiqc/modules/pbmarkdup/__init__.py -> build/lib/multiqc/modules/pbmarkdup 2024-05-17T11:39:46,577 copying multiqc/modules/pbmarkdup/pbmarkdup.py -> build/lib/multiqc/modules/pbmarkdup 2024-05-17T11:39:46,581 creating build/lib/multiqc/modules/peddy 2024-05-17T11:39:46,582 copying multiqc/modules/peddy/__init__.py -> build/lib/multiqc/modules/peddy 2024-05-17T11:39:46,585 copying multiqc/modules/peddy/peddy.py -> build/lib/multiqc/modules/peddy 2024-05-17T11:39:46,589 creating build/lib/multiqc/modules/phantompeakqualtools 2024-05-17T11:39:46,590 copying multiqc/modules/phantompeakqualtools/__init__.py -> build/lib/multiqc/modules/phantompeakqualtools 2024-05-17T11:39:46,593 copying multiqc/modules/phantompeakqualtools/phantompeakqualtools.py -> build/lib/multiqc/modules/phantompeakqualtools 2024-05-17T11:39:46,595 creating build/lib/multiqc/modules/picard 2024-05-17T11:39:46,596 copying multiqc/modules/picard/AlignmentSummaryMetrics.py -> build/lib/multiqc/modules/picard 2024-05-17T11:39:46,599 copying multiqc/modules/picard/BaseDistributionByCycleMetrics.py -> build/lib/multiqc/modules/picard 2024-05-17T11:39:46,601 copying multiqc/modules/picard/CrosscheckFingerprints.py -> build/lib/multiqc/modules/picard 2024-05-17T11:39:46,604 copying multiqc/modules/picard/ExtractIlluminaBarcodes.py -> build/lib/multiqc/modules/picard 2024-05-17T11:39:46,607 copying multiqc/modules/picard/GcBiasMetrics.py -> build/lib/multiqc/modules/picard 2024-05-17T11:39:46,610 copying multiqc/modules/picard/HsMetrics.py -> build/lib/multiqc/modules/picard 2024-05-17T11:39:46,614 copying multiqc/modules/picard/IlluminaBasecallingMetrics.py -> build/lib/multiqc/modules/picard 2024-05-17T11:39:46,616 copying multiqc/modules/picard/IlluminaLaneMetrics.py -> build/lib/multiqc/modules/picard 2024-05-17T11:39:46,618 copying multiqc/modules/picard/InsertSizeMetrics.py -> build/lib/multiqc/modules/picard 2024-05-17T11:39:46,621 copying multiqc/modules/picard/MarkDuplicates.py -> build/lib/multiqc/modules/picard 2024-05-17T11:39:46,623 copying multiqc/modules/picard/MarkIlluminaAdapters.py -> build/lib/multiqc/modules/picard 2024-05-17T11:39:46,626 copying multiqc/modules/picard/OxoGMetrics.py -> build/lib/multiqc/modules/picard 2024-05-17T11:39:46,629 copying multiqc/modules/picard/QualityByCycleMetrics.py -> build/lib/multiqc/modules/picard 2024-05-17T11:39:46,632 copying multiqc/modules/picard/QualityScoreDistributionMetrics.py -> build/lib/multiqc/modules/picard 2024-05-17T11:39:46,638 copying multiqc/modules/picard/QualityYieldMetrics.py -> build/lib/multiqc/modules/picard 2024-05-17T11:39:46,644 copying multiqc/modules/picard/RnaSeqMetrics.py -> build/lib/multiqc/modules/picard 2024-05-17T11:39:46,648 copying multiqc/modules/picard/RrbsSummaryMetrics.py -> build/lib/multiqc/modules/picard 2024-05-17T11:39:46,651 copying multiqc/modules/picard/TargetedPcrMetrics.py -> build/lib/multiqc/modules/picard 2024-05-17T11:39:46,654 copying multiqc/modules/picard/ValidateSamFile.py -> build/lib/multiqc/modules/picard 2024-05-17T11:39:46,656 copying multiqc/modules/picard/VariantCallingMetrics.py -> build/lib/multiqc/modules/picard 2024-05-17T11:39:46,659 copying multiqc/modules/picard/WgsMetrics.py -> build/lib/multiqc/modules/picard 2024-05-17T11:39:46,662 copying multiqc/modules/picard/__init__.py -> build/lib/multiqc/modules/picard 2024-05-17T11:39:46,664 copying multiqc/modules/picard/picard.py -> build/lib/multiqc/modules/picard 2024-05-17T11:39:46,666 copying multiqc/modules/picard/util.py -> build/lib/multiqc/modules/picard 2024-05-17T11:39:46,669 creating build/lib/multiqc/modules/porechop 2024-05-17T11:39:46,670 copying multiqc/modules/porechop/__init__.py -> build/lib/multiqc/modules/porechop 2024-05-17T11:39:46,673 copying multiqc/modules/porechop/porechop.py -> build/lib/multiqc/modules/porechop 2024-05-17T11:39:46,675 creating build/lib/multiqc/modules/preseq 2024-05-17T11:39:46,676 copying multiqc/modules/preseq/__init__.py -> build/lib/multiqc/modules/preseq 2024-05-17T11:39:46,678 copying multiqc/modules/preseq/preseq.py -> build/lib/multiqc/modules/preseq 2024-05-17T11:39:46,681 creating build/lib/multiqc/modules/prinseqplusplus 2024-05-17T11:39:46,682 copying multiqc/modules/prinseqplusplus/__init__.py -> build/lib/multiqc/modules/prinseqplusplus 2024-05-17T11:39:46,685 copying multiqc/modules/prinseqplusplus/prinseqplusplus.py -> build/lib/multiqc/modules/prinseqplusplus 2024-05-17T11:39:46,688 creating build/lib/multiqc/modules/prokka 2024-05-17T11:39:46,689 copying multiqc/modules/prokka/__init__.py -> build/lib/multiqc/modules/prokka 2024-05-17T11:39:46,692 copying multiqc/modules/prokka/prokka.py -> build/lib/multiqc/modules/prokka 2024-05-17T11:39:46,695 creating build/lib/multiqc/modules/purple 2024-05-17T11:39:46,696 copying multiqc/modules/purple/__init__.py -> build/lib/multiqc/modules/purple 2024-05-17T11:39:46,698 copying multiqc/modules/purple/purple.py -> build/lib/multiqc/modules/purple 2024-05-17T11:39:46,700 creating build/lib/multiqc/modules/pychopper 2024-05-17T11:39:46,701 copying multiqc/modules/pychopper/__init__.py -> build/lib/multiqc/modules/pychopper 2024-05-17T11:39:46,703 copying multiqc/modules/pychopper/pychopper.py -> build/lib/multiqc/modules/pychopper 2024-05-17T11:39:46,706 creating build/lib/multiqc/modules/pycoqc 2024-05-17T11:39:46,707 copying multiqc/modules/pycoqc/__init__.py -> build/lib/multiqc/modules/pycoqc 2024-05-17T11:39:46,709 copying multiqc/modules/pycoqc/pycoqc.py -> build/lib/multiqc/modules/pycoqc 2024-05-17T11:39:46,712 creating build/lib/multiqc/modules/qc3C 2024-05-17T11:39:46,713 copying multiqc/modules/qc3C/__init__.py -> build/lib/multiqc/modules/qc3C 2024-05-17T11:39:46,716 copying multiqc/modules/qc3C/qc3C.py -> build/lib/multiqc/modules/qc3C 2024-05-17T11:39:46,721 creating build/lib/multiqc/modules/qorts 2024-05-17T11:39:46,722 copying multiqc/modules/qorts/__init__.py -> build/lib/multiqc/modules/qorts 2024-05-17T11:39:46,724 copying multiqc/modules/qorts/qorts.py -> build/lib/multiqc/modules/qorts 2024-05-17T11:39:46,728 creating build/lib/multiqc/modules/qualimap 2024-05-17T11:39:46,730 copying multiqc/modules/qualimap/QM_BamQC.py -> build/lib/multiqc/modules/qualimap 2024-05-17T11:39:46,736 copying multiqc/modules/qualimap/QM_RNASeq.py -> build/lib/multiqc/modules/qualimap 2024-05-17T11:39:46,744 copying multiqc/modules/qualimap/__init__.py -> build/lib/multiqc/modules/qualimap 2024-05-17T11:39:46,751 copying multiqc/modules/qualimap/qualimap.py -> build/lib/multiqc/modules/qualimap 2024-05-17T11:39:46,758 creating build/lib/multiqc/modules/quast 2024-05-17T11:39:46,760 copying multiqc/modules/quast/__init__.py -> build/lib/multiqc/modules/quast 2024-05-17T11:39:46,767 copying multiqc/modules/quast/quast.py -> build/lib/multiqc/modules/quast 2024-05-17T11:39:46,775 creating build/lib/multiqc/modules/rna_seqc 2024-05-17T11:39:46,777 copying multiqc/modules/rna_seqc/__init__.py -> build/lib/multiqc/modules/rna_seqc 2024-05-17T11:39:46,780 copying multiqc/modules/rna_seqc/rna_seqc.py -> build/lib/multiqc/modules/rna_seqc 2024-05-17T11:39:46,784 creating build/lib/multiqc/modules/rockhopper 2024-05-17T11:39:46,785 copying multiqc/modules/rockhopper/__init__.py -> build/lib/multiqc/modules/rockhopper 2024-05-17T11:39:46,788 copying multiqc/modules/rockhopper/rockhopper.py -> build/lib/multiqc/modules/rockhopper 2024-05-17T11:39:46,792 creating build/lib/multiqc/modules/rsem 2024-05-17T11:39:46,794 copying multiqc/modules/rsem/__init__.py -> build/lib/multiqc/modules/rsem 2024-05-17T11:39:46,798 copying multiqc/modules/rsem/rsem.py -> build/lib/multiqc/modules/rsem 2024-05-17T11:39:46,801 creating build/lib/multiqc/modules/rseqc 2024-05-17T11:39:46,802 copying multiqc/modules/rseqc/__init__.py -> build/lib/multiqc/modules/rseqc 2024-05-17T11:39:46,806 copying multiqc/modules/rseqc/bam_stat.py -> build/lib/multiqc/modules/rseqc 2024-05-17T11:39:46,809 copying multiqc/modules/rseqc/gene_body_coverage.py -> build/lib/multiqc/modules/rseqc 2024-05-17T11:39:46,813 copying multiqc/modules/rseqc/infer_experiment.py -> build/lib/multiqc/modules/rseqc 2024-05-17T11:39:46,817 copying multiqc/modules/rseqc/inner_distance.py -> build/lib/multiqc/modules/rseqc 2024-05-17T11:39:46,820 copying multiqc/modules/rseqc/junction_annotation.py -> build/lib/multiqc/modules/rseqc 2024-05-17T11:39:46,824 copying multiqc/modules/rseqc/junction_saturation.py -> build/lib/multiqc/modules/rseqc 2024-05-17T11:39:46,829 copying multiqc/modules/rseqc/read_distribution.py -> build/lib/multiqc/modules/rseqc 2024-05-17T11:39:46,835 copying multiqc/modules/rseqc/read_duplication.py -> build/lib/multiqc/modules/rseqc 2024-05-17T11:39:46,840 copying multiqc/modules/rseqc/read_gc.py -> build/lib/multiqc/modules/rseqc 2024-05-17T11:39:46,844 copying multiqc/modules/rseqc/rseqc.py -> build/lib/multiqc/modules/rseqc 2024-05-17T11:39:46,847 copying multiqc/modules/rseqc/tin.py -> build/lib/multiqc/modules/rseqc 2024-05-17T11:39:46,850 creating build/lib/multiqc/modules/rseqc/assets 2024-05-17T11:39:46,850 creating build/lib/multiqc/modules/rseqc/assets/js 2024-05-17T11:39:46,852 copying multiqc/modules/rseqc/assets/js/multiqc_rseqc.js -> build/lib/multiqc/modules/rseqc/assets/js 2024-05-17T11:39:46,854 creating build/lib/multiqc/modules/salmon 2024-05-17T11:39:46,855 copying multiqc/modules/salmon/__init__.py -> build/lib/multiqc/modules/salmon 2024-05-17T11:39:46,857 copying multiqc/modules/salmon/salmon.py -> build/lib/multiqc/modules/salmon 2024-05-17T11:39:46,861 creating build/lib/multiqc/modules/sambamba 2024-05-17T11:39:46,862 copying multiqc/modules/sambamba/__init__.py -> build/lib/multiqc/modules/sambamba 2024-05-17T11:39:46,864 copying multiqc/modules/sambamba/markdup.py -> build/lib/multiqc/modules/sambamba 2024-05-17T11:39:46,868 copying multiqc/modules/sambamba/sambamba.py -> build/lib/multiqc/modules/sambamba 2024-05-17T11:39:46,870 creating build/lib/multiqc/modules/samblaster 2024-05-17T11:39:46,872 copying multiqc/modules/samblaster/__init__.py -> build/lib/multiqc/modules/samblaster 2024-05-17T11:39:46,874 copying multiqc/modules/samblaster/samblaster.py -> build/lib/multiqc/modules/samblaster 2024-05-17T11:39:46,878 creating build/lib/multiqc/modules/samtools 2024-05-17T11:39:46,879 copying multiqc/modules/samtools/__init__.py -> build/lib/multiqc/modules/samtools 2024-05-17T11:39:46,882 copying multiqc/modules/samtools/coverage.py -> build/lib/multiqc/modules/samtools 2024-05-17T11:39:46,886 copying multiqc/modules/samtools/flagstat.py -> build/lib/multiqc/modules/samtools 2024-05-17T11:39:46,890 copying multiqc/modules/samtools/idxstats.py -> build/lib/multiqc/modules/samtools 2024-05-17T11:39:46,894 copying multiqc/modules/samtools/markdup.py -> build/lib/multiqc/modules/samtools 2024-05-17T11:39:46,897 copying multiqc/modules/samtools/rmdup.py -> build/lib/multiqc/modules/samtools 2024-05-17T11:39:46,900 copying multiqc/modules/samtools/samtools.py -> build/lib/multiqc/modules/samtools 2024-05-17T11:39:46,903 copying multiqc/modules/samtools/stats.py -> build/lib/multiqc/modules/samtools 2024-05-17T11:39:46,907 creating build/lib/multiqc/modules/sargasso 2024-05-17T11:39:46,908 copying multiqc/modules/sargasso/__init__.py -> build/lib/multiqc/modules/sargasso 2024-05-17T11:39:46,911 copying multiqc/modules/sargasso/sargasso.py -> build/lib/multiqc/modules/sargasso 2024-05-17T11:39:46,914 creating build/lib/multiqc/modules/seqera_cli 2024-05-17T11:39:46,916 copying multiqc/modules/seqera_cli/__init__.py -> build/lib/multiqc/modules/seqera_cli 2024-05-17T11:39:46,919 copying multiqc/modules/seqera_cli/seqera_cli.py -> build/lib/multiqc/modules/seqera_cli 2024-05-17T11:39:46,923 creating build/lib/multiqc/modules/sequali 2024-05-17T11:39:46,924 copying multiqc/modules/sequali/__init__.py -> build/lib/multiqc/modules/sequali 2024-05-17T11:39:46,928 copying multiqc/modules/sequali/sequali.py -> build/lib/multiqc/modules/sequali 2024-05-17T11:39:46,934 creating build/lib/multiqc/modules/seqwho 2024-05-17T11:39:46,936 copying multiqc/modules/seqwho/__init__.py -> build/lib/multiqc/modules/seqwho 2024-05-17T11:39:46,939 copying multiqc/modules/seqwho/seqwho.py -> build/lib/multiqc/modules/seqwho 2024-05-17T11:39:46,943 creating build/lib/multiqc/modules/seqyclean 2024-05-17T11:39:46,944 copying multiqc/modules/seqyclean/__init__.py -> build/lib/multiqc/modules/seqyclean 2024-05-17T11:39:46,947 copying multiqc/modules/seqyclean/seqyclean.py -> build/lib/multiqc/modules/seqyclean 2024-05-17T11:39:46,951 creating build/lib/multiqc/modules/sexdeterrmine 2024-05-17T11:39:46,952 copying multiqc/modules/sexdeterrmine/__init__.py -> build/lib/multiqc/modules/sexdeterrmine 2024-05-17T11:39:46,955 copying multiqc/modules/sexdeterrmine/sexdeterrmine.py -> build/lib/multiqc/modules/sexdeterrmine 2024-05-17T11:39:46,958 creating build/lib/multiqc/modules/sickle 2024-05-17T11:39:46,959 copying multiqc/modules/sickle/__init__.py -> build/lib/multiqc/modules/sickle 2024-05-17T11:39:46,962 copying multiqc/modules/sickle/sickle.py -> build/lib/multiqc/modules/sickle 2024-05-17T11:39:46,965 creating build/lib/multiqc/modules/skewer 2024-05-17T11:39:46,966 copying multiqc/modules/skewer/__init__.py -> build/lib/multiqc/modules/skewer 2024-05-17T11:39:46,969 copying multiqc/modules/skewer/skewer.py -> build/lib/multiqc/modules/skewer 2024-05-17T11:39:46,972 creating build/lib/multiqc/modules/slamdunk 2024-05-17T11:39:46,973 copying multiqc/modules/slamdunk/__init__.py -> build/lib/multiqc/modules/slamdunk 2024-05-17T11:39:46,976 copying multiqc/modules/slamdunk/slamdunk.py -> build/lib/multiqc/modules/slamdunk 2024-05-17T11:39:46,980 creating build/lib/multiqc/modules/snippy 2024-05-17T11:39:46,981 copying multiqc/modules/snippy/__init__.py -> build/lib/multiqc/modules/snippy 2024-05-17T11:39:46,985 copying multiqc/modules/snippy/snippy.py -> build/lib/multiqc/modules/snippy 2024-05-17T11:39:46,988 creating build/lib/multiqc/modules/snpeff 2024-05-17T11:39:46,989 copying multiqc/modules/snpeff/__init__.py -> build/lib/multiqc/modules/snpeff 2024-05-17T11:39:46,992 copying multiqc/modules/snpeff/snpeff.py -> build/lib/multiqc/modules/snpeff 2024-05-17T11:39:46,995 creating build/lib/multiqc/modules/snpsplit 2024-05-17T11:39:46,997 copying multiqc/modules/snpsplit/__init__.py -> build/lib/multiqc/modules/snpsplit 2024-05-17T11:39:46,999 copying multiqc/modules/snpsplit/snpsplit.py -> build/lib/multiqc/modules/snpsplit 2024-05-17T11:39:47,003 creating build/lib/multiqc/modules/somalier 2024-05-17T11:39:47,004 copying multiqc/modules/somalier/__init__.py -> build/lib/multiqc/modules/somalier 2024-05-17T11:39:47,006 copying multiqc/modules/somalier/somalier.py -> build/lib/multiqc/modules/somalier 2024-05-17T11:39:47,010 creating build/lib/multiqc/modules/sortmerna 2024-05-17T11:39:47,012 copying multiqc/modules/sortmerna/__init__.py -> build/lib/multiqc/modules/sortmerna 2024-05-17T11:39:47,014 copying multiqc/modules/sortmerna/sortmerna.py -> build/lib/multiqc/modules/sortmerna 2024-05-17T11:39:47,018 creating build/lib/multiqc/modules/sourmash 2024-05-17T11:39:47,020 copying multiqc/modules/sourmash/__init__.py -> build/lib/multiqc/modules/sourmash 2024-05-17T11:39:47,023 copying multiqc/modules/sourmash/compare.py -> build/lib/multiqc/modules/sourmash 2024-05-17T11:39:47,026 copying multiqc/modules/sourmash/gather.py -> build/lib/multiqc/modules/sourmash 2024-05-17T11:39:47,030 copying multiqc/modules/sourmash/sourmash.py -> build/lib/multiqc/modules/sourmash 2024-05-17T11:39:47,034 creating build/lib/multiqc/modules/spaceranger 2024-05-17T11:39:47,035 copying multiqc/modules/spaceranger/__init__.py -> build/lib/multiqc/modules/spaceranger 2024-05-17T11:39:47,038 copying multiqc/modules/spaceranger/_utils.py -> build/lib/multiqc/modules/spaceranger 2024-05-17T11:39:47,042 copying multiqc/modules/spaceranger/count.py -> build/lib/multiqc/modules/spaceranger 2024-05-17T11:39:47,047 copying multiqc/modules/spaceranger/spaceranger.py -> build/lib/multiqc/modules/spaceranger 2024-05-17T11:39:47,051 creating build/lib/multiqc/modules/stacks 2024-05-17T11:39:47,052 copying multiqc/modules/stacks/__init__.py -> build/lib/multiqc/modules/stacks 2024-05-17T11:39:47,054 copying multiqc/modules/stacks/stacks.py -> build/lib/multiqc/modules/stacks 2024-05-17T11:39:47,057 creating build/lib/multiqc/modules/star 2024-05-17T11:39:47,058 copying multiqc/modules/star/__init__.py -> build/lib/multiqc/modules/star 2024-05-17T11:39:47,061 copying multiqc/modules/star/star.py -> build/lib/multiqc/modules/star 2024-05-17T11:39:47,064 creating build/lib/multiqc/modules/supernova 2024-05-17T11:39:47,065 copying multiqc/modules/supernova/__init__.py -> build/lib/multiqc/modules/supernova 2024-05-17T11:39:47,067 copying multiqc/modules/supernova/supernova.py -> build/lib/multiqc/modules/supernova 2024-05-17T11:39:47,069 creating build/lib/multiqc/modules/theta2 2024-05-17T11:39:47,070 copying multiqc/modules/theta2/__init__.py -> build/lib/multiqc/modules/theta2 2024-05-17T11:39:47,072 copying multiqc/modules/theta2/theta2.py -> build/lib/multiqc/modules/theta2 2024-05-17T11:39:47,074 creating build/lib/multiqc/modules/tophat 2024-05-17T11:39:47,075 copying multiqc/modules/tophat/__init__.py -> build/lib/multiqc/modules/tophat 2024-05-17T11:39:47,078 copying multiqc/modules/tophat/tophat.py -> build/lib/multiqc/modules/tophat 2024-05-17T11:39:47,081 creating build/lib/multiqc/modules/trimmomatic 2024-05-17T11:39:47,082 copying multiqc/modules/trimmomatic/__init__.py -> build/lib/multiqc/modules/trimmomatic 2024-05-17T11:39:47,084 copying multiqc/modules/trimmomatic/trimmomatic.py -> build/lib/multiqc/modules/trimmomatic 2024-05-17T11:39:47,086 creating build/lib/multiqc/modules/truvari 2024-05-17T11:39:47,087 copying multiqc/modules/truvari/__init__.py -> build/lib/multiqc/modules/truvari 2024-05-17T11:39:47,089 copying multiqc/modules/truvari/bench.py -> build/lib/multiqc/modules/truvari 2024-05-17T11:39:47,092 copying multiqc/modules/truvari/truvari.py -> build/lib/multiqc/modules/truvari 2024-05-17T11:39:47,094 creating build/lib/multiqc/modules/umitools 2024-05-17T11:39:47,095 copying multiqc/modules/umitools/__init__.py -> build/lib/multiqc/modules/umitools 2024-05-17T11:39:47,097 copying multiqc/modules/umitools/umitools.py -> build/lib/multiqc/modules/umitools 2024-05-17T11:39:47,100 creating build/lib/multiqc/modules/varscan2 2024-05-17T11:39:47,101 copying multiqc/modules/varscan2/__init__.py -> build/lib/multiqc/modules/varscan2 2024-05-17T11:39:47,103 copying multiqc/modules/varscan2/varscan2.py -> build/lib/multiqc/modules/varscan2 2024-05-17T11:39:47,106 creating build/lib/multiqc/modules/vcftools 2024-05-17T11:39:47,107 copying multiqc/modules/vcftools/__init__.py -> build/lib/multiqc/modules/vcftools 2024-05-17T11:39:47,109 copying multiqc/modules/vcftools/relatedness2.py -> build/lib/multiqc/modules/vcftools 2024-05-17T11:39:47,111 copying multiqc/modules/vcftools/tstv_by_count.py -> build/lib/multiqc/modules/vcftools 2024-05-17T11:39:47,114 copying multiqc/modules/vcftools/tstv_by_qual.py -> build/lib/multiqc/modules/vcftools 2024-05-17T11:39:47,116 copying multiqc/modules/vcftools/tstv_summary.py -> build/lib/multiqc/modules/vcftools 2024-05-17T11:39:47,119 copying multiqc/modules/vcftools/vcftools.py -> build/lib/multiqc/modules/vcftools 2024-05-17T11:39:47,121 creating build/lib/multiqc/modules/vep 2024-05-17T11:39:47,122 copying multiqc/modules/vep/__init__.py -> build/lib/multiqc/modules/vep 2024-05-17T11:39:47,124 copying multiqc/modules/vep/vep.py -> build/lib/multiqc/modules/vep 2024-05-17T11:39:47,129 creating build/lib/multiqc/modules/verifybamid 2024-05-17T11:39:47,130 copying multiqc/modules/verifybamid/__init__.py -> build/lib/multiqc/modules/verifybamid 2024-05-17T11:39:47,134 copying multiqc/modules/verifybamid/verifybamid.py -> build/lib/multiqc/modules/verifybamid 2024-05-17T11:39:47,137 creating build/lib/multiqc/modules/whatshap 2024-05-17T11:39:47,138 copying multiqc/modules/whatshap/__init__.py -> build/lib/multiqc/modules/whatshap 2024-05-17T11:39:47,141 copying multiqc/modules/whatshap/whatshap.py -> build/lib/multiqc/modules/whatshap 2024-05-17T11:39:47,144 creating build/lib/multiqc/modules/xengsort 2024-05-17T11:39:47,145 copying multiqc/modules/xengsort/__init__.py -> build/lib/multiqc/modules/xengsort 2024-05-17T11:39:47,148 copying multiqc/modules/xengsort/xengsort.py -> build/lib/multiqc/modules/xengsort 2024-05-17T11:39:47,150 creating build/lib/multiqc/modules/xenome 2024-05-17T11:39:47,151 copying multiqc/modules/xenome/__init__.py -> build/lib/multiqc/modules/xenome 2024-05-17T11:39:47,154 copying multiqc/modules/xenome/xenome.py -> build/lib/multiqc/modules/xenome 2024-05-17T11:39:47,157 creating build/lib/multiqc/plots 2024-05-17T11:39:47,158 copying multiqc/plots/__init__.py -> build/lib/multiqc/plots 2024-05-17T11:39:47,160 copying multiqc/plots/bargraph.py -> build/lib/multiqc/plots 2024-05-17T11:39:47,163 copying multiqc/plots/box.py -> build/lib/multiqc/plots 2024-05-17T11:39:47,165 copying multiqc/plots/heatmap.py -> build/lib/multiqc/plots 2024-05-17T11:39:47,167 copying multiqc/plots/linegraph.py -> build/lib/multiqc/plots 2024-05-17T11:39:47,170 copying multiqc/plots/scatter.py -> build/lib/multiqc/plots 2024-05-17T11:39:47,172 copying multiqc/plots/table.py -> build/lib/multiqc/plots 2024-05-17T11:39:47,175 copying multiqc/plots/table_object.py -> build/lib/multiqc/plots 2024-05-17T11:39:47,178 copying multiqc/plots/violin.py -> build/lib/multiqc/plots 2024-05-17T11:39:47,180 creating build/lib/multiqc/plots/plotly 2024-05-17T11:39:47,181 copying multiqc/plots/plotly/__init__.py -> build/lib/multiqc/plots/plotly 2024-05-17T11:39:47,183 copying multiqc/plots/plotly/bar.py -> build/lib/multiqc/plots/plotly 2024-05-17T11:39:47,185 copying multiqc/plots/plotly/box.py -> build/lib/multiqc/plots/plotly 2024-05-17T11:39:47,188 copying multiqc/plots/plotly/heatmap.py -> build/lib/multiqc/plots/plotly 2024-05-17T11:39:47,191 copying multiqc/plots/plotly/line.py -> build/lib/multiqc/plots/plotly 2024-05-17T11:39:47,193 copying multiqc/plots/plotly/plot.py -> build/lib/multiqc/plots/plotly 2024-05-17T11:39:47,197 copying multiqc/plots/plotly/scatter.py -> build/lib/multiqc/plots/plotly 2024-05-17T11:39:47,200 copying multiqc/plots/plotly/table.py -> build/lib/multiqc/plots/plotly 2024-05-17T11:39:47,204 copying multiqc/plots/plotly/violin.py -> build/lib/multiqc/plots/plotly 2024-05-17T11:39:47,209 creating build/lib/multiqc/templates 2024-05-17T11:39:47,211 copying multiqc/templates/__init__.py -> build/lib/multiqc/templates 2024-05-17T11:39:47,215 creating build/lib/multiqc/templates/default 2024-05-17T11:39:47,216 copying multiqc/templates/default/__init__.py -> build/lib/multiqc/templates/default 2024-05-17T11:39:47,218 copying multiqc/templates/default/base.html -> build/lib/multiqc/templates/default 2024-05-17T11:39:47,220 copying multiqc/templates/default/content.html -> build/lib/multiqc/templates/default 2024-05-17T11:39:47,222 copying multiqc/templates/default/foot.html -> build/lib/multiqc/templates/default 2024-05-17T11:39:47,224 copying multiqc/templates/default/footer.html -> build/lib/multiqc/templates/default 2024-05-17T11:39:47,226 copying multiqc/templates/default/general_stats.html -> build/lib/multiqc/templates/default 2024-05-17T11:39:47,229 copying multiqc/templates/default/head.html -> build/lib/multiqc/templates/default 2024-05-17T11:39:47,231 copying multiqc/templates/default/header.html -> build/lib/multiqc/templates/default 2024-05-17T11:39:47,234 copying multiqc/templates/default/includes.html -> build/lib/multiqc/templates/default 2024-05-17T11:39:47,236 copying multiqc/templates/default/nav.html -> build/lib/multiqc/templates/default 2024-05-17T11:39:47,238 copying multiqc/templates/default/toolbox.html -> build/lib/multiqc/templates/default 2024-05-17T11:39:47,242 creating build/lib/multiqc/templates/default/assets 2024-05-17T11:39:47,242 creating build/lib/multiqc/templates/default/assets/css 2024-05-17T11:39:47,243 copying multiqc/templates/default/assets/css/bootstrap.min.css -> build/lib/multiqc/templates/default/assets/css 2024-05-17T11:39:47,249 copying multiqc/templates/default/assets/css/default_multiqc.css -> build/lib/multiqc/templates/default/assets/css 2024-05-17T11:39:47,252 copying multiqc/templates/default/assets/css/jquery.toast.css -> build/lib/multiqc/templates/default/assets/css 2024-05-17T11:39:47,255 creating build/lib/multiqc/templates/default/assets/fonts 2024-05-17T11:39:47,256 copying multiqc/templates/default/assets/fonts/glyphicons-halflings-regular.eot -> build/lib/multiqc/templates/default/assets/fonts 2024-05-17T11:39:47,260 copying multiqc/templates/default/assets/fonts/glyphicons-halflings-regular.svg -> build/lib/multiqc/templates/default/assets/fonts 2024-05-17T11:39:47,497 copying multiqc/templates/default/assets/fonts/glyphicons-halflings-regular.ttf -> build/lib/multiqc/templates/default/assets/fonts 2024-05-17T11:39:47,500 copying multiqc/templates/default/assets/fonts/glyphicons-halflings-regular.woff -> build/lib/multiqc/templates/default/assets/fonts 2024-05-17T11:39:47,503 copying multiqc/templates/default/assets/fonts/glyphicons-halflings-regular.woff2 -> build/lib/multiqc/templates/default/assets/fonts 2024-05-17T11:39:47,506 creating build/lib/multiqc/templates/default/assets/img 2024-05-17T11:39:47,506 copying multiqc/templates/default/assets/img/MultiQC_logo.png -> build/lib/multiqc/templates/default/assets/img 2024-05-17T11:39:47,510 copying multiqc/templates/default/assets/img/MultiQC_logo_dark.svg -> build/lib/multiqc/templates/default/assets/img 2024-05-17T11:39:47,512 copying multiqc/templates/default/assets/img/favicon-16x16.png -> build/lib/multiqc/templates/default/assets/img 2024-05-17T11:39:47,514 copying multiqc/templates/default/assets/img/favicon-32x32.png -> build/lib/multiqc/templates/default/assets/img 2024-05-17T11:39:47,517 copying multiqc/templates/default/assets/img/favicon-96x96.png -> build/lib/multiqc/templates/default/assets/img 2024-05-17T11:39:47,520 copying multiqc/templates/default/assets/img/seqera_logo.png -> build/lib/multiqc/templates/default/assets/img 2024-05-17T11:39:47,522 copying multiqc/templates/default/assets/img/seqera_logo_mono.png -> build/lib/multiqc/templates/default/assets/img 2024-05-17T11:39:47,524 creating build/lib/multiqc/templates/default/assets/js 2024-05-17T11:39:47,525 copying multiqc/templates/default/assets/js/decompress.js -> build/lib/multiqc/templates/default/assets/js 2024-05-17T11:39:47,527 copying multiqc/templates/default/assets/js/flat.js -> build/lib/multiqc/templates/default/assets/js 2024-05-17T11:39:47,529 copying multiqc/templates/default/assets/js/multiqc.js -> build/lib/multiqc/templates/default/assets/js 2024-05-17T11:39:47,532 copying multiqc/templates/default/assets/js/plotting.js -> build/lib/multiqc/templates/default/assets/js 2024-05-17T11:39:47,534 copying multiqc/templates/default/assets/js/render.js -> build/lib/multiqc/templates/default/assets/js 2024-05-17T11:39:47,536 copying multiqc/templates/default/assets/js/tables.js -> build/lib/multiqc/templates/default/assets/js 2024-05-17T11:39:47,539 copying multiqc/templates/default/assets/js/toolbox.js -> build/lib/multiqc/templates/default/assets/js 2024-05-17T11:39:47,543 creating build/lib/multiqc/templates/default/assets/js/packages 2024-05-17T11:39:47,544 copying multiqc/templates/default/assets/js/packages/FileSaver.min.js -> build/lib/multiqc/templates/default/assets/js/packages 2024-05-17T11:39:47,546 copying multiqc/templates/default/assets/js/packages/bootstrap.min.js -> build/lib/multiqc/templates/default/assets/js/packages 2024-05-17T11:39:47,549 copying multiqc/templates/default/assets/js/packages/jquery-3.1.1.min.js -> build/lib/multiqc/templates/default/assets/js/packages 2024-05-17T11:39:47,558 copying multiqc/templates/default/assets/js/packages/jquery-ui.min.js -> build/lib/multiqc/templates/default/assets/js/packages 2024-05-17T11:39:47,563 copying multiqc/templates/default/assets/js/packages/jquery.tablesorter.min.js -> build/lib/multiqc/templates/default/assets/js/packages 2024-05-17T11:39:47,568 copying multiqc/templates/default/assets/js/packages/jquery.toast.min.js -> build/lib/multiqc/templates/default/assets/js/packages 2024-05-17T11:39:47,570 copying multiqc/templates/default/assets/js/packages/jszip.min.js -> build/lib/multiqc/templates/default/assets/js/packages 2024-05-17T11:39:47,574 copying multiqc/templates/default/assets/js/packages/pako_inflate.min.js -> build/lib/multiqc/templates/default/assets/js/packages 2024-05-17T11:39:47,577 copying multiqc/templates/default/assets/js/packages/plotly-2.27.0.js -> build/lib/multiqc/templates/default/assets/js/packages 2024-05-17T11:39:47,865 copying multiqc/templates/default/assets/js/packages/plotly-2.27.0.min.js -> build/lib/multiqc/templates/default/assets/js/packages 2024-05-17T11:39:47,973 creating build/lib/multiqc/templates/default/assets/js/plots 2024-05-17T11:39:47,974 copying multiqc/templates/default/assets/js/plots/bar.js -> build/lib/multiqc/templates/default/assets/js/plots 2024-05-17T11:39:47,976 copying multiqc/templates/default/assets/js/plots/box.js -> build/lib/multiqc/templates/default/assets/js/plots 2024-05-17T11:39:47,979 copying multiqc/templates/default/assets/js/plots/heatmap.js -> build/lib/multiqc/templates/default/assets/js/plots 2024-05-17T11:39:47,981 copying multiqc/templates/default/assets/js/plots/line.js -> build/lib/multiqc/templates/default/assets/js/plots 2024-05-17T11:39:47,984 copying multiqc/templates/default/assets/js/plots/scatter.js -> build/lib/multiqc/templates/default/assets/js/plots 2024-05-17T11:39:47,986 copying multiqc/templates/default/assets/js/plots/violin.js -> build/lib/multiqc/templates/default/assets/js/plots 2024-05-17T11:39:47,989 creating build/lib/multiqc/templates/gathered 2024-05-17T11:39:47,990 copying multiqc/templates/gathered/__init__.py -> build/lib/multiqc/templates/gathered 2024-05-17T11:39:47,992 copying multiqc/templates/gathered/content.html -> build/lib/multiqc/templates/gathered 2024-05-17T11:39:47,995 copying multiqc/templates/gathered/nav.html -> build/lib/multiqc/templates/gathered 2024-05-17T11:39:47,998 creating build/lib/multiqc/templates/geo 2024-05-17T11:39:47,999 copying multiqc/templates/geo/__init__.py -> build/lib/multiqc/templates/geo 2024-05-17T11:39:48,003 copying multiqc/templates/geo/includes.html -> build/lib/multiqc/templates/geo 2024-05-17T11:39:48,006 creating build/lib/multiqc/templates/geo/assets 2024-05-17T11:39:48,007 creating build/lib/multiqc/templates/geo/assets/css 2024-05-17T11:39:48,008 copying multiqc/templates/geo/assets/css/bootstrap.min.css -> build/lib/multiqc/templates/geo/assets/css 2024-05-17T11:39:48,012 creating build/lib/multiqc/templates/geo/assets/img 2024-05-17T11:39:48,013 copying multiqc/templates/geo/assets/img/emailme.gif -> build/lib/multiqc/templates/geo/assets/img 2024-05-17T11:39:48,015 copying multiqc/templates/geo/assets/img/flames.gif -> build/lib/multiqc/templates/geo/assets/img 2024-05-17T11:39:48,020 copying multiqc/templates/geo/assets/img/glyphicons-halflings-white.png -> build/lib/multiqc/templates/geo/assets/img 2024-05-17T11:39:48,023 copying multiqc/templates/geo/assets/img/glyphicons-halflings.png -> build/lib/multiqc/templates/geo/assets/img 2024-05-17T11:39:48,026 copying multiqc/templates/geo/assets/img/hot.gif -> build/lib/multiqc/templates/geo/assets/img 2024-05-17T11:39:48,032 copying multiqc/templates/geo/assets/img/mchammer.gif -> build/lib/multiqc/templates/geo/assets/img 2024-05-17T11:39:48,090 copying multiqc/templates/geo/assets/img/microfab.gif -> build/lib/multiqc/templates/geo/assets/img 2024-05-17T11:39:48,094 copying multiqc/templates/geo/assets/img/new.gif -> build/lib/multiqc/templates/geo/assets/img 2024-05-17T11:39:48,096 copying multiqc/templates/geo/assets/img/new2.gif -> build/lib/multiqc/templates/geo/assets/img 2024-05-17T11:39:48,099 copying multiqc/templates/geo/assets/img/progress.gif -> build/lib/multiqc/templates/geo/assets/img 2024-05-17T11:39:48,101 copying multiqc/templates/geo/assets/img/rainbow.gif -> build/lib/multiqc/templates/geo/assets/img 2024-05-17T11:39:48,103 copying multiqc/templates/geo/assets/img/stars.gif -> build/lib/multiqc/templates/geo/assets/img 2024-05-17T11:39:48,107 creating build/lib/multiqc/templates/sections 2024-05-17T11:39:48,108 copying multiqc/templates/sections/__init__.py -> build/lib/multiqc/templates/sections 2024-05-17T11:39:48,111 copying multiqc/templates/sections/content.html -> build/lib/multiqc/templates/sections 2024-05-17T11:39:48,113 creating build/lib/multiqc/templates/simple 2024-05-17T11:39:48,114 copying multiqc/templates/simple/__init__.py -> build/lib/multiqc/templates/simple 2024-05-17T11:39:48,117 copying multiqc/templates/simple/foot.html -> build/lib/multiqc/templates/simple 2024-05-17T11:39:48,119 copying multiqc/templates/simple/header.html -> build/lib/multiqc/templates/simple 2024-05-17T11:39:48,121 copying multiqc/templates/simple/includes.html -> build/lib/multiqc/templates/simple 2024-05-17T11:39:48,123 copying multiqc/templates/simple/nav.html -> build/lib/multiqc/templates/simple 2024-05-17T11:39:48,125 copying multiqc/templates/simple/toolbox.html -> build/lib/multiqc/templates/simple 2024-05-17T11:39:48,127 creating build/lib/multiqc/utils 2024-05-17T11:39:48,128 copying multiqc/utils/__init__.py -> build/lib/multiqc/utils 2024-05-17T11:39:48,129 copying multiqc/utils/config.py -> build/lib/multiqc/utils 2024-05-17T11:39:48,131 copying multiqc/utils/megaqc.py -> build/lib/multiqc/utils 2024-05-17T11:39:48,133 copying multiqc/utils/mqc_colour.py -> build/lib/multiqc/utils 2024-05-17T11:39:48,137 copying multiqc/utils/report.py -> build/lib/multiqc/utils 2024-05-17T11:39:48,140 copying multiqc/utils/util_functions.py -> build/lib/multiqc/utils 2024-05-17T11:39:48,151 installing to build/bdist.linux-armv7l/wheel 2024-05-17T11:39:48,152 running install 2024-05-17T11:39:48,176 running install_lib 2024-05-17T11:39:48,180 creating build/bdist.linux-armv7l 2024-05-17T11:39:48,181 creating build/bdist.linux-armv7l/wheel 2024-05-17T11:39:48,183 creating build/bdist.linux-armv7l/wheel/multiqc 2024-05-17T11:39:48,184 copying build/lib/multiqc/interactive.py -> build/bdist.linux-armv7l/wheel/multiqc 2024-05-17T11:39:48,188 copying build/lib/multiqc/multiqc.py -> build/bdist.linux-armv7l/wheel/multiqc 2024-05-17T11:39:48,192 creating build/bdist.linux-armv7l/wheel/multiqc/templates 2024-05-17T11:39:48,195 creating build/bdist.linux-armv7l/wheel/multiqc/templates/sections 2024-05-17T11:39:48,196 copying build/lib/multiqc/templates/sections/content.html -> build/bdist.linux-armv7l/wheel/multiqc/templates/sections 2024-05-17T11:39:48,198 copying build/lib/multiqc/templates/sections/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/templates/sections 2024-05-17T11:39:48,202 creating build/bdist.linux-armv7l/wheel/multiqc/templates/default 2024-05-17T11:39:48,203 copying build/lib/multiqc/templates/default/head.html -> build/bdist.linux-armv7l/wheel/multiqc/templates/default 2024-05-17T11:39:48,206 copying build/lib/multiqc/templates/default/content.html -> build/bdist.linux-armv7l/wheel/multiqc/templates/default 2024-05-17T11:39:48,208 copying build/lib/multiqc/templates/default/toolbox.html -> build/bdist.linux-armv7l/wheel/multiqc/templates/default 2024-05-17T11:39:48,212 copying build/lib/multiqc/templates/default/includes.html -> build/bdist.linux-armv7l/wheel/multiqc/templates/default 2024-05-17T11:39:48,214 copying build/lib/multiqc/templates/default/base.html -> build/bdist.linux-armv7l/wheel/multiqc/templates/default 2024-05-17T11:39:48,217 creating build/bdist.linux-armv7l/wheel/multiqc/templates/default/assets 2024-05-17T11:39:48,218 creating build/bdist.linux-armv7l/wheel/multiqc/templates/default/assets/fonts 2024-05-17T11:39:48,220 copying build/lib/multiqc/templates/default/assets/fonts/glyphicons-halflings-regular.ttf -> build/bdist.linux-armv7l/wheel/multiqc/templates/default/assets/fonts 2024-05-17T11:39:48,223 copying build/lib/multiqc/templates/default/assets/fonts/glyphicons-halflings-regular.svg -> build/bdist.linux-armv7l/wheel/multiqc/templates/default/assets/fonts 2024-05-17T11:39:48,230 copying build/lib/multiqc/templates/default/assets/fonts/glyphicons-halflings-regular.woff2 -> build/bdist.linux-armv7l/wheel/multiqc/templates/default/assets/fonts 2024-05-17T11:39:48,233 copying build/lib/multiqc/templates/default/assets/fonts/glyphicons-halflings-regular.eot -> build/bdist.linux-armv7l/wheel/multiqc/templates/default/assets/fonts 2024-05-17T11:39:48,236 copying build/lib/multiqc/templates/default/assets/fonts/glyphicons-halflings-regular.woff -> build/bdist.linux-armv7l/wheel/multiqc/templates/default/assets/fonts 2024-05-17T11:39:48,239 creating build/bdist.linux-armv7l/wheel/multiqc/templates/default/assets/img 2024-05-17T11:39:48,240 copying build/lib/multiqc/templates/default/assets/img/favicon-16x16.png -> build/bdist.linux-armv7l/wheel/multiqc/templates/default/assets/img 2024-05-17T11:39:48,242 copying build/lib/multiqc/templates/default/assets/img/favicon-96x96.png -> build/bdist.linux-armv7l/wheel/multiqc/templates/default/assets/img 2024-05-17T11:39:48,245 copying build/lib/multiqc/templates/default/assets/img/favicon-32x32.png -> build/bdist.linux-armv7l/wheel/multiqc/templates/default/assets/img 2024-05-17T11:39:48,247 copying build/lib/multiqc/templates/default/assets/img/seqera_logo_mono.png -> build/bdist.linux-armv7l/wheel/multiqc/templates/default/assets/img 2024-05-17T11:39:48,250 copying build/lib/multiqc/templates/default/assets/img/MultiQC_logo.png -> build/bdist.linux-armv7l/wheel/multiqc/templates/default/assets/img 2024-05-17T11:39:48,252 copying build/lib/multiqc/templates/default/assets/img/MultiQC_logo_dark.svg -> build/bdist.linux-armv7l/wheel/multiqc/templates/default/assets/img 2024-05-17T11:39:48,255 copying build/lib/multiqc/templates/default/assets/img/seqera_logo.png -> build/bdist.linux-armv7l/wheel/multiqc/templates/default/assets/img 2024-05-17T11:39:48,258 creating build/bdist.linux-armv7l/wheel/multiqc/templates/default/assets/css 2024-05-17T11:39:48,259 copying build/lib/multiqc/templates/default/assets/css/bootstrap.min.css -> build/bdist.linux-armv7l/wheel/multiqc/templates/default/assets/css 2024-05-17T11:39:48,307 copying build/lib/multiqc/templates/default/assets/css/jquery.toast.css -> build/bdist.linux-armv7l/wheel/multiqc/templates/default/assets/css 2024-05-17T11:39:48,309 copying build/lib/multiqc/templates/default/assets/css/default_multiqc.css -> build/bdist.linux-armv7l/wheel/multiqc/templates/default/assets/css 2024-05-17T11:39:48,312 creating build/bdist.linux-armv7l/wheel/multiqc/templates/default/assets/js 2024-05-17T11:39:48,313 creating build/bdist.linux-armv7l/wheel/multiqc/templates/default/assets/js/packages 2024-05-17T11:39:48,314 copying build/lib/multiqc/templates/default/assets/js/packages/jszip.min.js -> build/bdist.linux-armv7l/wheel/multiqc/templates/default/assets/js/packages 2024-05-17T11:39:48,320 copying build/lib/multiqc/templates/default/assets/js/packages/plotly-2.27.0.min.js -> build/bdist.linux-armv7l/wheel/multiqc/templates/default/assets/js/packages 2024-05-17T11:39:48,404 copying build/lib/multiqc/templates/default/assets/js/packages/jquery.tablesorter.min.js -> build/bdist.linux-armv7l/wheel/multiqc/templates/default/assets/js/packages 2024-05-17T11:39:48,407 copying build/lib/multiqc/templates/default/assets/js/packages/jquery-ui.min.js -> build/bdist.linux-armv7l/wheel/multiqc/templates/default/assets/js/packages 2024-05-17T11:39:48,410 copying build/lib/multiqc/templates/default/assets/js/packages/jquery.toast.min.js -> build/bdist.linux-armv7l/wheel/multiqc/templates/default/assets/js/packages 2024-05-17T11:39:48,413 copying build/lib/multiqc/templates/default/assets/js/packages/FileSaver.min.js -> build/bdist.linux-armv7l/wheel/multiqc/templates/default/assets/js/packages 2024-05-17T11:39:48,415 copying build/lib/multiqc/templates/default/assets/js/packages/plotly-2.27.0.js -> build/bdist.linux-armv7l/wheel/multiqc/templates/default/assets/js/packages 2024-05-17T11:39:48,793 copying build/lib/multiqc/templates/default/assets/js/packages/jquery-3.1.1.min.js -> build/bdist.linux-armv7l/wheel/multiqc/templates/default/assets/js/packages 2024-05-17T11:39:48,799 copying build/lib/multiqc/templates/default/assets/js/packages/bootstrap.min.js -> build/bdist.linux-armv7l/wheel/multiqc/templates/default/assets/js/packages 2024-05-17T11:39:48,805 copying build/lib/multiqc/templates/default/assets/js/packages/pako_inflate.min.js -> build/bdist.linux-armv7l/wheel/multiqc/templates/default/assets/js/packages 2024-05-17T11:39:48,809 copying build/lib/multiqc/templates/default/assets/js/decompress.js -> build/bdist.linux-armv7l/wheel/multiqc/templates/default/assets/js 2024-05-17T11:39:48,812 copying build/lib/multiqc/templates/default/assets/js/multiqc.js -> build/bdist.linux-armv7l/wheel/multiqc/templates/default/assets/js 2024-05-17T11:39:48,815 copying build/lib/multiqc/templates/default/assets/js/toolbox.js -> build/bdist.linux-armv7l/wheel/multiqc/templates/default/assets/js 2024-05-17T11:39:48,820 copying build/lib/multiqc/templates/default/assets/js/flat.js -> build/bdist.linux-armv7l/wheel/multiqc/templates/default/assets/js 2024-05-17T11:39:48,823 creating build/bdist.linux-armv7l/wheel/multiqc/templates/default/assets/js/plots 2024-05-17T11:39:48,824 copying build/lib/multiqc/templates/default/assets/js/plots/bar.js -> build/bdist.linux-armv7l/wheel/multiqc/templates/default/assets/js/plots 2024-05-17T11:39:48,827 copying build/lib/multiqc/templates/default/assets/js/plots/box.js -> build/bdist.linux-armv7l/wheel/multiqc/templates/default/assets/js/plots 2024-05-17T11:39:48,830 copying build/lib/multiqc/templates/default/assets/js/plots/line.js -> build/bdist.linux-armv7l/wheel/multiqc/templates/default/assets/js/plots 2024-05-17T11:39:48,833 copying build/lib/multiqc/templates/default/assets/js/plots/violin.js -> build/bdist.linux-armv7l/wheel/multiqc/templates/default/assets/js/plots 2024-05-17T11:39:48,836 copying build/lib/multiqc/templates/default/assets/js/plots/heatmap.js -> build/bdist.linux-armv7l/wheel/multiqc/templates/default/assets/js/plots 2024-05-17T11:39:48,839 copying build/lib/multiqc/templates/default/assets/js/plots/scatter.js -> build/bdist.linux-armv7l/wheel/multiqc/templates/default/assets/js/plots 2024-05-17T11:39:48,842 copying build/lib/multiqc/templates/default/assets/js/render.js -> build/bdist.linux-armv7l/wheel/multiqc/templates/default/assets/js 2024-05-17T11:39:48,845 copying build/lib/multiqc/templates/default/assets/js/tables.js -> build/bdist.linux-armv7l/wheel/multiqc/templates/default/assets/js 2024-05-17T11:39:48,849 copying build/lib/multiqc/templates/default/assets/js/plotting.js -> build/bdist.linux-armv7l/wheel/multiqc/templates/default/assets/js 2024-05-17T11:39:48,853 copying build/lib/multiqc/templates/default/footer.html -> build/bdist.linux-armv7l/wheel/multiqc/templates/default 2024-05-17T11:39:48,856 copying build/lib/multiqc/templates/default/header.html -> build/bdist.linux-armv7l/wheel/multiqc/templates/default 2024-05-17T11:39:48,859 copying build/lib/multiqc/templates/default/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/templates/default 2024-05-17T11:39:48,862 copying build/lib/multiqc/templates/default/nav.html -> build/bdist.linux-armv7l/wheel/multiqc/templates/default 2024-05-17T11:39:48,864 copying build/lib/multiqc/templates/default/foot.html -> build/bdist.linux-armv7l/wheel/multiqc/templates/default 2024-05-17T11:39:48,868 copying build/lib/multiqc/templates/default/general_stats.html -> build/bdist.linux-armv7l/wheel/multiqc/templates/default 2024-05-17T11:39:48,871 creating build/bdist.linux-armv7l/wheel/multiqc/templates/simple 2024-05-17T11:39:48,872 copying build/lib/multiqc/templates/simple/toolbox.html -> build/bdist.linux-armv7l/wheel/multiqc/templates/simple 2024-05-17T11:39:48,875 copying build/lib/multiqc/templates/simple/includes.html -> build/bdist.linux-armv7l/wheel/multiqc/templates/simple 2024-05-17T11:39:48,877 copying build/lib/multiqc/templates/simple/header.html -> build/bdist.linux-armv7l/wheel/multiqc/templates/simple 2024-05-17T11:39:48,880 copying build/lib/multiqc/templates/simple/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/templates/simple 2024-05-17T11:39:48,882 copying build/lib/multiqc/templates/simple/nav.html -> build/bdist.linux-armv7l/wheel/multiqc/templates/simple 2024-05-17T11:39:48,884 copying build/lib/multiqc/templates/simple/foot.html -> build/bdist.linux-armv7l/wheel/multiqc/templates/simple 2024-05-17T11:39:48,887 creating build/bdist.linux-armv7l/wheel/multiqc/templates/gathered 2024-05-17T11:39:48,888 copying build/lib/multiqc/templates/gathered/content.html -> build/bdist.linux-armv7l/wheel/multiqc/templates/gathered 2024-05-17T11:39:48,890 copying build/lib/multiqc/templates/gathered/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/templates/gathered 2024-05-17T11:39:48,892 copying build/lib/multiqc/templates/gathered/nav.html -> build/bdist.linux-armv7l/wheel/multiqc/templates/gathered 2024-05-17T11:39:48,894 copying build/lib/multiqc/templates/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/templates 2024-05-17T11:39:48,897 creating build/bdist.linux-armv7l/wheel/multiqc/templates/geo 2024-05-17T11:39:48,898 copying build/lib/multiqc/templates/geo/includes.html -> build/bdist.linux-armv7l/wheel/multiqc/templates/geo 2024-05-17T11:39:48,902 creating build/bdist.linux-armv7l/wheel/multiqc/templates/geo/assets 2024-05-17T11:39:48,905 creating build/bdist.linux-armv7l/wheel/multiqc/templates/geo/assets/img 2024-05-17T11:39:48,906 copying build/lib/multiqc/templates/geo/assets/img/progress.gif -> build/bdist.linux-armv7l/wheel/multiqc/templates/geo/assets/img 2024-05-17T11:39:48,908 copying build/lib/multiqc/templates/geo/assets/img/new.gif -> build/bdist.linux-armv7l/wheel/multiqc/templates/geo/assets/img 2024-05-17T11:39:48,910 copying build/lib/multiqc/templates/geo/assets/img/stars.gif -> build/bdist.linux-armv7l/wheel/multiqc/templates/geo/assets/img 2024-05-17T11:39:48,913 copying build/lib/multiqc/templates/geo/assets/img/flames.gif -> build/bdist.linux-armv7l/wheel/multiqc/templates/geo/assets/img 2024-05-17T11:39:48,917 copying build/lib/multiqc/templates/geo/assets/img/rainbow.gif -> build/bdist.linux-armv7l/wheel/multiqc/templates/geo/assets/img 2024-05-17T11:39:48,919 copying build/lib/multiqc/templates/geo/assets/img/new2.gif -> build/bdist.linux-armv7l/wheel/multiqc/templates/geo/assets/img 2024-05-17T11:39:48,922 copying build/lib/multiqc/templates/geo/assets/img/hot.gif -> build/bdist.linux-armv7l/wheel/multiqc/templates/geo/assets/img 2024-05-17T11:39:48,925 copying build/lib/multiqc/templates/geo/assets/img/microfab.gif -> build/bdist.linux-armv7l/wheel/multiqc/templates/geo/assets/img 2024-05-17T11:39:48,929 copying build/lib/multiqc/templates/geo/assets/img/glyphicons-halflings.png -> build/bdist.linux-armv7l/wheel/multiqc/templates/geo/assets/img 2024-05-17T11:39:48,932 copying build/lib/multiqc/templates/geo/assets/img/emailme.gif -> build/bdist.linux-armv7l/wheel/multiqc/templates/geo/assets/img 2024-05-17T11:39:48,934 copying build/lib/multiqc/templates/geo/assets/img/mchammer.gif -> build/bdist.linux-armv7l/wheel/multiqc/templates/geo/assets/img 2024-05-17T11:39:48,939 copying build/lib/multiqc/templates/geo/assets/img/glyphicons-halflings-white.png -> build/bdist.linux-armv7l/wheel/multiqc/templates/geo/assets/img 2024-05-17T11:39:48,943 creating build/bdist.linux-armv7l/wheel/multiqc/templates/geo/assets/css 2024-05-17T11:39:48,944 copying build/lib/multiqc/templates/geo/assets/css/bootstrap.min.css -> build/bdist.linux-armv7l/wheel/multiqc/templates/geo/assets/css 2024-05-17T11:39:48,988 copying build/lib/multiqc/templates/geo/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/templates/geo 2024-05-17T11:39:48,990 copying build/lib/multiqc/__main__.py -> build/bdist.linux-armv7l/wheel/multiqc 2024-05-17T11:39:48,993 creating build/bdist.linux-armv7l/wheel/multiqc/utils 2024-05-17T11:39:48,994 copying build/lib/multiqc/utils/util_functions.py -> build/bdist.linux-armv7l/wheel/multiqc/utils 2024-05-17T11:39:48,997 copying build/lib/multiqc/utils/megaqc.py -> build/bdist.linux-armv7l/wheel/multiqc/utils 2024-05-17T11:39:49,000 copying build/lib/multiqc/utils/mqc_colour.py -> build/bdist.linux-armv7l/wheel/multiqc/utils 2024-05-17T11:39:49,004 copying build/lib/multiqc/utils/report.py -> build/bdist.linux-armv7l/wheel/multiqc/utils 2024-05-17T11:39:49,006 copying build/lib/multiqc/utils/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/utils 2024-05-17T11:39:49,008 copying build/lib/multiqc/utils/config.py -> build/bdist.linux-armv7l/wheel/multiqc/utils 2024-05-17T11:39:49,010 copying build/lib/multiqc/search_patterns.yaml -> build/bdist.linux-armv7l/wheel/multiqc 2024-05-17T11:39:49,013 copying build/lib/multiqc/report.py -> build/bdist.linux-armv7l/wheel/multiqc 2024-05-17T11:39:49,017 creating build/bdist.linux-armv7l/wheel/multiqc/plots 2024-05-17T11:39:49,018 copying build/lib/multiqc/plots/table_object.py -> build/bdist.linux-armv7l/wheel/multiqc/plots 2024-05-17T11:39:49,021 copying build/lib/multiqc/plots/scatter.py -> build/bdist.linux-armv7l/wheel/multiqc/plots 2024-05-17T11:39:49,024 copying build/lib/multiqc/plots/table.py -> build/bdist.linux-armv7l/wheel/multiqc/plots 2024-05-17T11:39:49,026 copying build/lib/multiqc/plots/linegraph.py -> build/bdist.linux-armv7l/wheel/multiqc/plots 2024-05-17T11:39:49,030 copying build/lib/multiqc/plots/heatmap.py -> build/bdist.linux-armv7l/wheel/multiqc/plots 2024-05-17T11:39:49,033 creating build/bdist.linux-armv7l/wheel/multiqc/plots/plotly 2024-05-17T11:39:49,034 copying build/lib/multiqc/plots/plotly/plot.py -> build/bdist.linux-armv7l/wheel/multiqc/plots/plotly 2024-05-17T11:39:49,038 copying build/lib/multiqc/plots/plotly/scatter.py -> build/bdist.linux-armv7l/wheel/multiqc/plots/plotly 2024-05-17T11:39:49,041 copying build/lib/multiqc/plots/plotly/line.py -> build/bdist.linux-armv7l/wheel/multiqc/plots/plotly 2024-05-17T11:39:49,044 copying build/lib/multiqc/plots/plotly/table.py -> build/bdist.linux-armv7l/wheel/multiqc/plots/plotly 2024-05-17T11:39:49,047 copying build/lib/multiqc/plots/plotly/heatmap.py -> build/bdist.linux-armv7l/wheel/multiqc/plots/plotly 2024-05-17T11:39:49,050 copying build/lib/multiqc/plots/plotly/box.py -> build/bdist.linux-armv7l/wheel/multiqc/plots/plotly 2024-05-17T11:39:49,052 copying build/lib/multiqc/plots/plotly/bar.py -> build/bdist.linux-armv7l/wheel/multiqc/plots/plotly 2024-05-17T11:39:49,055 copying build/lib/multiqc/plots/plotly/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/plots/plotly 2024-05-17T11:39:49,058 copying build/lib/multiqc/plots/plotly/violin.py -> build/bdist.linux-armv7l/wheel/multiqc/plots/plotly 2024-05-17T11:39:49,061 copying build/lib/multiqc/plots/box.py -> build/bdist.linux-armv7l/wheel/multiqc/plots 2024-05-17T11:39:49,063 copying build/lib/multiqc/plots/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/plots 2024-05-17T11:39:49,065 copying build/lib/multiqc/plots/bargraph.py -> build/bdist.linux-armv7l/wheel/multiqc/plots 2024-05-17T11:39:49,068 copying build/lib/multiqc/plots/violin.py -> build/bdist.linux-armv7l/wheel/multiqc/plots 2024-05-17T11:39:49,070 copying build/lib/multiqc/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc 2024-05-17T11:39:49,072 copying build/lib/multiqc/base_module.py -> build/bdist.linux-armv7l/wheel/multiqc 2024-05-17T11:39:49,076 creating build/bdist.linux-armv7l/wheel/multiqc/core 2024-05-17T11:39:49,077 copying build/lib/multiqc/core/strict_helpers.py -> build/bdist.linux-armv7l/wheel/multiqc/core 2024-05-17T11:39:49,079 copying build/lib/multiqc/core/init_log.py -> build/bdist.linux-armv7l/wheel/multiqc/core 2024-05-17T11:39:49,082 copying build/lib/multiqc/core/file_search.py -> build/bdist.linux-armv7l/wheel/multiqc/core 2024-05-17T11:39:49,084 copying build/lib/multiqc/core/version_check.py -> build/bdist.linux-armv7l/wheel/multiqc/core 2024-05-17T11:39:49,087 copying build/lib/multiqc/core/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/core 2024-05-17T11:39:49,089 copying build/lib/multiqc/core/write_results.py -> build/bdist.linux-armv7l/wheel/multiqc/core 2024-05-17T11:39:49,092 copying build/lib/multiqc/core/plugin_hooks.py -> build/bdist.linux-armv7l/wheel/multiqc/core 2024-05-17T11:39:49,094 copying build/lib/multiqc/core/exec_modules.py -> build/bdist.linux-armv7l/wheel/multiqc/core 2024-05-17T11:39:49,097 copying build/lib/multiqc/core/exceptions.py -> build/bdist.linux-armv7l/wheel/multiqc/core 2024-05-17T11:39:49,099 copying build/lib/multiqc/core/software_versions.py -> build/bdist.linux-armv7l/wheel/multiqc/core 2024-05-17T11:39:49,102 copying build/lib/multiqc/core/update_config.py -> build/bdist.linux-armv7l/wheel/multiqc/core 2024-05-17T11:39:49,104 copying build/lib/multiqc/config_defaults.yaml -> build/bdist.linux-armv7l/wheel/multiqc 2024-05-17T11:39:49,108 copying build/lib/multiqc/config.py -> build/bdist.linux-armv7l/wheel/multiqc 2024-05-17T11:39:49,118 creating build/bdist.linux-armv7l/wheel/multiqc/modules 2024-05-17T11:39:49,119 creating build/bdist.linux-armv7l/wheel/multiqc/modules/adapterremoval 2024-05-17T11:39:49,121 copying build/lib/multiqc/modules/adapterremoval/adapterremoval.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/adapterremoval 2024-05-17T11:39:49,124 copying build/lib/multiqc/modules/adapterremoval/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/adapterremoval 2024-05-17T11:39:49,126 creating build/bdist.linux-armv7l/wheel/multiqc/modules/xengsort 2024-05-17T11:39:49,128 copying build/lib/multiqc/modules/xengsort/xengsort.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/xengsort 2024-05-17T11:39:49,130 copying build/lib/multiqc/modules/xengsort/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/xengsort 2024-05-17T11:39:49,133 creating build/bdist.linux-armv7l/wheel/multiqc/modules/eigenstratdatabasetools 2024-05-17T11:39:49,134 copying build/lib/multiqc/modules/eigenstratdatabasetools/eigenstratdatabasetools.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/eigenstratdatabasetools 2024-05-17T11:39:49,137 copying build/lib/multiqc/modules/eigenstratdatabasetools/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/eigenstratdatabasetools 2024-05-17T11:39:49,139 creating build/bdist.linux-armv7l/wheel/multiqc/modules/slamdunk 2024-05-17T11:39:49,140 copying build/lib/multiqc/modules/slamdunk/slamdunk.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/slamdunk 2024-05-17T11:39:49,144 copying build/lib/multiqc/modules/slamdunk/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/slamdunk 2024-05-17T11:39:49,147 creating build/bdist.linux-armv7l/wheel/multiqc/modules/bamdst 2024-05-17T11:39:49,148 copying build/lib/multiqc/modules/bamdst/bamdst.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/bamdst 2024-05-17T11:39:49,152 copying build/lib/multiqc/modules/bamdst/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/bamdst 2024-05-17T11:39:49,154 creating build/bdist.linux-armv7l/wheel/multiqc/modules/fgbio 2024-05-17T11:39:49,156 copying build/lib/multiqc/modules/fgbio/ErrorRateByReadPosition.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/fgbio 2024-05-17T11:39:49,159 copying build/lib/multiqc/modules/fgbio/groupreadsbyumi.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/fgbio 2024-05-17T11:39:49,161 copying build/lib/multiqc/modules/fgbio/fgbio.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/fgbio 2024-05-17T11:39:49,163 copying build/lib/multiqc/modules/fgbio/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/fgbio 2024-05-17T11:39:49,166 creating build/bdist.linux-armv7l/wheel/multiqc/modules/bakta 2024-05-17T11:39:49,167 copying build/lib/multiqc/modules/bakta/bakta.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/bakta 2024-05-17T11:39:49,170 copying build/lib/multiqc/modules/bakta/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/bakta 2024-05-17T11:39:49,173 creating build/bdist.linux-armv7l/wheel/multiqc/modules/fastq_screen 2024-05-17T11:39:49,174 copying build/lib/multiqc/modules/fastq_screen/fastq_screen.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/fastq_screen 2024-05-17T11:39:49,176 copying build/lib/multiqc/modules/fastq_screen/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/fastq_screen 2024-05-17T11:39:49,178 creating build/bdist.linux-armv7l/wheel/multiqc/modules/salmon 2024-05-17T11:39:49,179 copying build/lib/multiqc/modules/salmon/salmon.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/salmon 2024-05-17T11:39:49,181 copying build/lib/multiqc/modules/salmon/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/salmon 2024-05-17T11:39:49,184 creating build/bdist.linux-armv7l/wheel/multiqc/modules/cutadapt 2024-05-17T11:39:49,184 copying build/lib/multiqc/modules/cutadapt/cutadapt.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/cutadapt 2024-05-17T11:39:49,188 copying build/lib/multiqc/modules/cutadapt/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/cutadapt 2024-05-17T11:39:49,190 creating build/bdist.linux-armv7l/wheel/multiqc/modules/porechop 2024-05-17T11:39:49,191 copying build/lib/multiqc/modules/porechop/porechop.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/porechop 2024-05-17T11:39:49,194 copying build/lib/multiqc/modules/porechop/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/porechop 2024-05-17T11:39:49,196 creating build/bdist.linux-armv7l/wheel/multiqc/modules/dedup 2024-05-17T11:39:49,197 copying build/lib/multiqc/modules/dedup/dedup.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/dedup 2024-05-17T11:39:49,199 copying build/lib/multiqc/modules/dedup/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/dedup 2024-05-17T11:39:49,202 creating build/bdist.linux-armv7l/wheel/multiqc/modules/picard 2024-05-17T11:39:49,203 copying build/lib/multiqc/modules/picard/ExtractIlluminaBarcodes.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/picard 2024-05-17T11:39:49,205 copying build/lib/multiqc/modules/picard/QualityYieldMetrics.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/picard 2024-05-17T11:39:49,207 copying build/lib/multiqc/modules/picard/RrbsSummaryMetrics.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/picard 2024-05-17T11:39:49,209 copying build/lib/multiqc/modules/picard/ValidateSamFile.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/picard 2024-05-17T11:39:49,212 copying build/lib/multiqc/modules/picard/CrosscheckFingerprints.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/picard 2024-05-17T11:39:49,214 copying build/lib/multiqc/modules/picard/WgsMetrics.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/picard 2024-05-17T11:39:49,216 copying build/lib/multiqc/modules/picard/OxoGMetrics.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/picard 2024-05-17T11:39:49,218 copying build/lib/multiqc/modules/picard/RnaSeqMetrics.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/picard 2024-05-17T11:39:49,220 copying build/lib/multiqc/modules/picard/util.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/picard 2024-05-17T11:39:49,223 copying build/lib/multiqc/modules/picard/IlluminaBasecallingMetrics.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/picard 2024-05-17T11:39:49,225 copying build/lib/multiqc/modules/picard/MarkIlluminaAdapters.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/picard 2024-05-17T11:39:49,227 copying build/lib/multiqc/modules/picard/BaseDistributionByCycleMetrics.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/picard 2024-05-17T11:39:49,230 copying build/lib/multiqc/modules/picard/VariantCallingMetrics.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/picard 2024-05-17T11:39:49,233 copying build/lib/multiqc/modules/picard/AlignmentSummaryMetrics.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/picard 2024-05-17T11:39:49,235 copying build/lib/multiqc/modules/picard/TargetedPcrMetrics.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/picard 2024-05-17T11:39:49,237 copying build/lib/multiqc/modules/picard/GcBiasMetrics.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/picard 2024-05-17T11:39:49,240 copying build/lib/multiqc/modules/picard/QualityScoreDistributionMetrics.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/picard 2024-05-17T11:39:49,241 copying build/lib/multiqc/modules/picard/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/picard 2024-05-17T11:39:49,243 copying build/lib/multiqc/modules/picard/picard.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/picard 2024-05-17T11:39:49,245 copying build/lib/multiqc/modules/picard/MarkDuplicates.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/picard 2024-05-17T11:39:49,248 copying build/lib/multiqc/modules/picard/HsMetrics.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/picard 2024-05-17T11:39:49,250 copying build/lib/multiqc/modules/picard/IlluminaLaneMetrics.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/picard 2024-05-17T11:39:49,252 copying build/lib/multiqc/modules/picard/QualityByCycleMetrics.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/picard 2024-05-17T11:39:49,254 copying build/lib/multiqc/modules/picard/InsertSizeMetrics.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/picard 2024-05-17T11:39:49,257 creating build/bdist.linux-armv7l/wheel/multiqc/modules/nonpareil 2024-05-17T11:39:49,257 copying build/lib/multiqc/modules/nonpareil/nonpareil.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/nonpareil 2024-05-17T11:39:49,260 copying build/lib/multiqc/modules/nonpareil/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/nonpareil 2024-05-17T11:39:49,262 creating build/bdist.linux-armv7l/wheel/multiqc/modules/busco 2024-05-17T11:39:49,263 copying build/lib/multiqc/modules/busco/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/busco 2024-05-17T11:39:49,265 copying build/lib/multiqc/modules/busco/busco.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/busco 2024-05-17T11:39:49,267 creating build/bdist.linux-armv7l/wheel/multiqc/modules/featureCounts 2024-05-17T11:39:49,268 copying build/lib/multiqc/modules/featureCounts/feature_counts.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/featureCounts 2024-05-17T11:39:49,271 copying build/lib/multiqc/modules/featureCounts/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/featureCounts 2024-05-17T11:39:49,273 creating build/bdist.linux-armv7l/wheel/multiqc/modules/ngsderive 2024-05-17T11:39:49,274 copying build/lib/multiqc/modules/ngsderive/ngsderive.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/ngsderive 2024-05-17T11:39:49,278 copying build/lib/multiqc/modules/ngsderive/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/ngsderive 2024-05-17T11:39:49,280 creating build/bdist.linux-armv7l/wheel/multiqc/modules/biobambam2 2024-05-17T11:39:49,280 copying build/lib/multiqc/modules/biobambam2/biobambam2.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/biobambam2 2024-05-17T11:39:49,282 copying build/lib/multiqc/modules/biobambam2/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/biobambam2 2024-05-17T11:39:49,285 creating build/bdist.linux-armv7l/wheel/multiqc/modules/deeptools 2024-05-17T11:39:49,286 copying build/lib/multiqc/modules/deeptools/plotFingerprint.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/deeptools 2024-05-17T11:39:49,289 copying build/lib/multiqc/modules/deeptools/bamPEFragmentSizeTable.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/deeptools 2024-05-17T11:39:49,292 copying build/lib/multiqc/modules/deeptools/plotEnrichment.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/deeptools 2024-05-17T11:39:49,294 copying build/lib/multiqc/modules/deeptools/plotCorrelation.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/deeptools 2024-05-17T11:39:49,296 copying build/lib/multiqc/modules/deeptools/plotCoverage.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/deeptools 2024-05-17T11:39:49,298 copying build/lib/multiqc/modules/deeptools/plotProfile.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/deeptools 2024-05-17T11:39:49,301 copying build/lib/multiqc/modules/deeptools/bamPEFragmentSizeDistribution.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/deeptools 2024-05-17T11:39:49,302 copying build/lib/multiqc/modules/deeptools/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/deeptools 2024-05-17T11:39:49,304 copying build/lib/multiqc/modules/deeptools/estimateReadFiltering.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/deeptools 2024-05-17T11:39:49,307 copying build/lib/multiqc/modules/deeptools/plotPCA.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/deeptools 2024-05-17T11:39:49,309 copying build/lib/multiqc/modules/deeptools/deeptools.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/deeptools 2024-05-17T11:39:49,311 creating build/bdist.linux-armv7l/wheel/multiqc/modules/ccs 2024-05-17T11:39:49,312 copying build/lib/multiqc/modules/ccs/ccs.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/ccs 2024-05-17T11:39:49,314 copying build/lib/multiqc/modules/ccs/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/ccs 2024-05-17T11:39:49,316 creating build/bdist.linux-armv7l/wheel/multiqc/modules/kat 2024-05-17T11:39:49,317 copying build/lib/multiqc/modules/kat/kat.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/kat 2024-05-17T11:39:49,319 copying build/lib/multiqc/modules/kat/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/kat 2024-05-17T11:39:49,321 creating build/bdist.linux-armv7l/wheel/multiqc/modules/quast 2024-05-17T11:39:49,322 copying build/lib/multiqc/modules/quast/quast.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/quast 2024-05-17T11:39:49,325 copying build/lib/multiqc/modules/quast/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/quast 2024-05-17T11:39:49,327 creating build/bdist.linux-armv7l/wheel/multiqc/modules/qualimap 2024-05-17T11:39:49,328 copying build/lib/multiqc/modules/qualimap/QM_BamQC.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/qualimap 2024-05-17T11:39:49,331 copying build/lib/multiqc/modules/qualimap/qualimap.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/qualimap 2024-05-17T11:39:49,333 copying build/lib/multiqc/modules/qualimap/QM_RNASeq.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/qualimap 2024-05-17T11:39:49,336 copying build/lib/multiqc/modules/qualimap/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/qualimap 2024-05-17T11:39:49,338 creating build/bdist.linux-armv7l/wheel/multiqc/modules/kaiju 2024-05-17T11:39:49,339 copying build/lib/multiqc/modules/kaiju/kaiju.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/kaiju 2024-05-17T11:39:49,341 copying build/lib/multiqc/modules/kaiju/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/kaiju 2024-05-17T11:39:49,344 creating build/bdist.linux-armv7l/wheel/multiqc/modules/cellranger 2024-05-17T11:39:49,345 copying build/lib/multiqc/modules/cellranger/utils.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/cellranger 2024-05-17T11:39:49,347 copying build/lib/multiqc/modules/cellranger/vdj.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/cellranger 2024-05-17T11:39:49,350 copying build/lib/multiqc/modules/cellranger/count.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/cellranger 2024-05-17T11:39:49,353 copying build/lib/multiqc/modules/cellranger/cellranger.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/cellranger 2024-05-17T11:39:49,356 copying build/lib/multiqc/modules/cellranger/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/cellranger 2024-05-17T11:39:49,358 creating build/bdist.linux-armv7l/wheel/multiqc/modules/hifiasm 2024-05-17T11:39:49,359 copying build/lib/multiqc/modules/hifiasm/hifiasm.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/hifiasm 2024-05-17T11:39:49,362 copying build/lib/multiqc/modules/hifiasm/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/hifiasm 2024-05-17T11:39:49,364 creating build/bdist.linux-armv7l/wheel/multiqc/modules/metaphlan 2024-05-17T11:39:49,365 copying build/lib/multiqc/modules/metaphlan/metaphlan.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/metaphlan 2024-05-17T11:39:49,368 copying build/lib/multiqc/modules/metaphlan/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/metaphlan 2024-05-17T11:39:49,370 creating build/bdist.linux-armv7l/wheel/multiqc/modules/bismark 2024-05-17T11:39:49,371 copying build/lib/multiqc/modules/bismark/bismark.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/bismark 2024-05-17T11:39:49,374 copying build/lib/multiqc/modules/bismark/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/bismark 2024-05-17T11:39:49,377 creating build/bdist.linux-armv7l/wheel/multiqc/modules/bcl2fastq 2024-05-17T11:39:49,377 copying build/lib/multiqc/modules/bcl2fastq/bcl2fastq.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/bcl2fastq 2024-05-17T11:39:49,380 copying build/lib/multiqc/modules/bcl2fastq/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/bcl2fastq 2024-05-17T11:39:49,382 creating build/bdist.linux-armv7l/wheel/multiqc/modules/whatshap 2024-05-17T11:39:49,383 copying build/lib/multiqc/modules/whatshap/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/whatshap 2024-05-17T11:39:49,385 copying build/lib/multiqc/modules/whatshap/whatshap.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/whatshap 2024-05-17T11:39:49,389 creating build/bdist.linux-armv7l/wheel/multiqc/modules/rsem 2024-05-17T11:39:49,390 copying build/lib/multiqc/modules/rsem/rsem.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/rsem 2024-05-17T11:39:49,393 copying build/lib/multiqc/modules/rsem/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/rsem 2024-05-17T11:39:49,396 creating build/bdist.linux-armv7l/wheel/multiqc/modules/clipandmerge 2024-05-17T11:39:49,397 copying build/lib/multiqc/modules/clipandmerge/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/clipandmerge 2024-05-17T11:39:49,398 copying build/lib/multiqc/modules/clipandmerge/clipandmerge.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/clipandmerge 2024-05-17T11:39:49,401 creating build/bdist.linux-armv7l/wheel/multiqc/modules/homer 2024-05-17T11:39:49,402 copying build/lib/multiqc/modules/homer/findpeaks.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/homer 2024-05-17T11:39:49,404 copying build/lib/multiqc/modules/homer/homer.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/homer 2024-05-17T11:39:49,406 copying build/lib/multiqc/modules/homer/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/homer 2024-05-17T11:39:49,408 copying build/lib/multiqc/modules/homer/tagdirectory.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/homer 2024-05-17T11:39:49,411 creating build/bdist.linux-armv7l/wheel/multiqc/modules/sortmerna 2024-05-17T11:39:49,412 copying build/lib/multiqc/modules/sortmerna/sortmerna.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/sortmerna 2024-05-17T11:39:49,414 copying build/lib/multiqc/modules/sortmerna/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/sortmerna 2024-05-17T11:39:49,417 creating build/bdist.linux-armv7l/wheel/multiqc/modules/flash 2024-05-17T11:39:49,418 copying build/lib/multiqc/modules/flash/flash.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/flash 2024-05-17T11:39:49,421 copying build/lib/multiqc/modules/flash/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/flash 2024-05-17T11:39:49,423 creating build/bdist.linux-armv7l/wheel/multiqc/modules/bbmap 2024-05-17T11:39:49,424 copying build/lib/multiqc/modules/bbmap/plot_idhist.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/bbmap 2024-05-17T11:39:49,427 copying build/lib/multiqc/modules/bbmap/bbmap_filetypes.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/bbmap 2024-05-17T11:39:49,430 copying build/lib/multiqc/modules/bbmap/plot_ihist.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/bbmap 2024-05-17T11:39:49,432 copying build/lib/multiqc/modules/bbmap/plot_bqhist.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/bbmap 2024-05-17T11:39:49,434 copying build/lib/multiqc/modules/bbmap/bbmap.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/bbmap 2024-05-17T11:39:49,437 copying build/lib/multiqc/modules/bbmap/plot_qchist.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/bbmap 2024-05-17T11:39:49,439 copying build/lib/multiqc/modules/bbmap/plot_bhist.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/bbmap 2024-05-17T11:39:49,441 copying build/lib/multiqc/modules/bbmap/plot_aqhist.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/bbmap 2024-05-17T11:39:49,443 copying build/lib/multiqc/modules/bbmap/plot_basic_hist.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/bbmap 2024-05-17T11:39:49,445 copying build/lib/multiqc/modules/bbmap/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/bbmap 2024-05-17T11:39:49,447 copying build/lib/multiqc/modules/bbmap/plot_qhist.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/bbmap 2024-05-17T11:39:49,449 copying build/lib/multiqc/modules/bbmap/plot_mhist.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/bbmap 2024-05-17T11:39:49,452 copying build/lib/multiqc/modules/bbmap/plot_covhist.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/bbmap 2024-05-17T11:39:49,454 copying build/lib/multiqc/modules/bbmap/plot_qahist.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/bbmap 2024-05-17T11:39:49,456 copying build/lib/multiqc/modules/bbmap/plot_indelhist.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/bbmap 2024-05-17T11:39:49,458 creating build/bdist.linux-armv7l/wheel/multiqc/modules/truvari 2024-05-17T11:39:49,459 copying build/lib/multiqc/modules/truvari/truvari.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/truvari 2024-05-17T11:39:49,461 copying build/lib/multiqc/modules/truvari/bench.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/truvari 2024-05-17T11:39:49,463 copying build/lib/multiqc/modules/truvari/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/truvari 2024-05-17T11:39:49,466 creating build/bdist.linux-armv7l/wheel/multiqc/modules/snpsplit 2024-05-17T11:39:49,467 copying build/lib/multiqc/modules/snpsplit/snpsplit.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/snpsplit 2024-05-17T11:39:49,470 copying build/lib/multiqc/modules/snpsplit/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/snpsplit 2024-05-17T11:39:49,473 creating build/bdist.linux-armv7l/wheel/multiqc/modules/supernova 2024-05-17T11:39:49,474 copying build/lib/multiqc/modules/supernova/supernova.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/supernova 2024-05-17T11:39:49,476 copying build/lib/multiqc/modules/supernova/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/supernova 2024-05-17T11:39:49,479 creating build/bdist.linux-armv7l/wheel/multiqc/modules/bbduk 2024-05-17T11:39:49,480 copying build/lib/multiqc/modules/bbduk/bbduk.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/bbduk 2024-05-17T11:39:49,482 copying build/lib/multiqc/modules/bbduk/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/bbduk 2024-05-17T11:39:49,485 creating build/bdist.linux-armv7l/wheel/multiqc/modules/filtlong 2024-05-17T11:39:49,486 copying build/lib/multiqc/modules/filtlong/filtlong.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/filtlong 2024-05-17T11:39:49,488 copying build/lib/multiqc/modules/filtlong/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/filtlong 2024-05-17T11:39:49,490 creating build/bdist.linux-armv7l/wheel/multiqc/modules/megahit 2024-05-17T11:39:49,492 copying build/lib/multiqc/modules/megahit/megahit.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/megahit 2024-05-17T11:39:49,494 copying build/lib/multiqc/modules/megahit/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/megahit 2024-05-17T11:39:49,497 creating build/bdist.linux-armv7l/wheel/multiqc/modules/conpair 2024-05-17T11:39:49,498 copying build/lib/multiqc/modules/conpair/conpair.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/conpair 2024-05-17T11:39:49,501 copying build/lib/multiqc/modules/conpair/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/conpair 2024-05-17T11:39:49,504 creating build/bdist.linux-armv7l/wheel/multiqc/modules/phantompeakqualtools 2024-05-17T11:39:49,505 copying build/lib/multiqc/modules/phantompeakqualtools/phantompeakqualtools.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/phantompeakqualtools 2024-05-17T11:39:49,507 copying build/lib/multiqc/modules/phantompeakqualtools/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/phantompeakqualtools 2024-05-17T11:39:49,509 creating build/bdist.linux-armv7l/wheel/multiqc/modules/goleft_indexcov 2024-05-17T11:39:49,510 copying build/lib/multiqc/modules/goleft_indexcov/goleft_indexcov.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/goleft_indexcov 2024-05-17T11:39:49,512 copying build/lib/multiqc/modules/goleft_indexcov/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/goleft_indexcov 2024-05-17T11:39:49,514 creating build/bdist.linux-armv7l/wheel/multiqc/modules/jellyfish 2024-05-17T11:39:49,515 copying build/lib/multiqc/modules/jellyfish/jellyfish.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/jellyfish 2024-05-17T11:39:49,517 copying build/lib/multiqc/modules/jellyfish/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/jellyfish 2024-05-17T11:39:49,519 creating build/bdist.linux-armv7l/wheel/multiqc/modules/snpeff 2024-05-17T11:39:49,520 copying build/lib/multiqc/modules/snpeff/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/snpeff 2024-05-17T11:39:49,522 copying build/lib/multiqc/modules/snpeff/snpeff.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/snpeff 2024-05-17T11:39:49,525 creating build/bdist.linux-armv7l/wheel/multiqc/modules/odgi 2024-05-17T11:39:49,526 copying build/lib/multiqc/modules/odgi/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/odgi 2024-05-17T11:39:49,528 copying build/lib/multiqc/modules/odgi/odgi.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/odgi 2024-05-17T11:39:49,530 creating build/bdist.linux-armv7l/wheel/multiqc/modules/lima 2024-05-17T11:39:49,531 copying build/lib/multiqc/modules/lima/lima.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/lima 2024-05-17T11:39:49,534 copying build/lib/multiqc/modules/lima/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/lima 2024-05-17T11:39:49,536 creating build/bdist.linux-armv7l/wheel/multiqc/modules/isoseq 2024-05-17T11:39:49,537 copying build/lib/multiqc/modules/isoseq/isoseq.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/isoseq 2024-05-17T11:39:49,540 copying build/lib/multiqc/modules/isoseq/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/isoseq 2024-05-17T11:39:49,543 creating build/bdist.linux-armv7l/wheel/multiqc/modules/checkqc 2024-05-17T11:39:49,544 copying build/lib/multiqc/modules/checkqc/checkqc.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/checkqc 2024-05-17T11:39:49,548 copying build/lib/multiqc/modules/checkqc/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/checkqc 2024-05-17T11:39:49,550 creating build/bdist.linux-armv7l/wheel/multiqc/modules/trimmomatic 2024-05-17T11:39:49,551 copying build/lib/multiqc/modules/trimmomatic/trimmomatic.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/trimmomatic 2024-05-17T11:39:49,553 copying build/lib/multiqc/modules/trimmomatic/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/trimmomatic 2024-05-17T11:39:49,555 creating build/bdist.linux-armv7l/wheel/multiqc/modules/dragen_fastqc 2024-05-17T11:39:49,556 copying build/lib/multiqc/modules/dragen_fastqc/content_metrics.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/dragen_fastqc 2024-05-17T11:39:49,559 copying build/lib/multiqc/modules/dragen_fastqc/dragen_fastqc.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/dragen_fastqc 2024-05-17T11:39:49,561 copying build/lib/multiqc/modules/dragen_fastqc/base_metrics.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/dragen_fastqc 2024-05-17T11:39:49,564 copying build/lib/multiqc/modules/dragen_fastqc/util.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/dragen_fastqc 2024-05-17T11:39:49,566 creating build/bdist.linux-armv7l/wheel/multiqc/modules/dragen_fastqc/assets 2024-05-17T11:39:49,567 creating build/bdist.linux-armv7l/wheel/multiqc/modules/dragen_fastqc/assets/js 2024-05-17T11:39:49,568 copying build/lib/multiqc/modules/dragen_fastqc/assets/js/multiqc_dragen_fastqc.js -> build/bdist.linux-armv7l/wheel/multiqc/modules/dragen_fastqc/assets/js 2024-05-17T11:39:49,571 copying build/lib/multiqc/modules/dragen_fastqc/gc_metrics.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/dragen_fastqc 2024-05-17T11:39:49,573 copying build/lib/multiqc/modules/dragen_fastqc/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/dragen_fastqc 2024-05-17T11:39:49,574 copying build/lib/multiqc/modules/dragen_fastqc/read_metrics.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/dragen_fastqc 2024-05-17T11:39:49,577 creating build/bdist.linux-armv7l/wheel/multiqc/modules/rna_seqc 2024-05-17T11:39:49,578 copying build/lib/multiqc/modules/rna_seqc/rna_seqc.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/rna_seqc 2024-05-17T11:39:49,580 copying build/lib/multiqc/modules/rna_seqc/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/rna_seqc 2024-05-17T11:39:49,582 creating build/bdist.linux-armv7l/wheel/multiqc/modules/vep 2024-05-17T11:39:49,583 copying build/lib/multiqc/modules/vep/vep.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/vep 2024-05-17T11:39:49,586 copying build/lib/multiqc/modules/vep/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/vep 2024-05-17T11:39:49,588 creating build/bdist.linux-armv7l/wheel/multiqc/modules/sexdeterrmine 2024-05-17T11:39:49,589 copying build/lib/multiqc/modules/sexdeterrmine/sexdeterrmine.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/sexdeterrmine 2024-05-17T11:39:49,591 copying build/lib/multiqc/modules/sexdeterrmine/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/sexdeterrmine 2024-05-17T11:39:49,593 creating build/bdist.linux-armv7l/wheel/multiqc/modules/sequali 2024-05-17T11:39:49,594 copying build/lib/multiqc/modules/sequali/sequali.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/sequali 2024-05-17T11:39:49,597 copying build/lib/multiqc/modules/sequali/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/sequali 2024-05-17T11:39:49,599 creating build/bdist.linux-armv7l/wheel/multiqc/modules/dragen 2024-05-17T11:39:49,600 copying build/lib/multiqc/modules/dragen/ploidy_estimation_metrics.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/dragen 2024-05-17T11:39:49,602 copying build/lib/multiqc/modules/dragen/rna_quant_metrics.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/dragen 2024-05-17T11:39:49,604 copying build/lib/multiqc/modules/dragen/dragen.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/dragen 2024-05-17T11:39:49,606 copying build/lib/multiqc/modules/dragen/coverage_hist.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/dragen 2024-05-17T11:39:49,609 copying build/lib/multiqc/modules/dragen/utils.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/dragen 2024-05-17T11:39:49,611 copying build/lib/multiqc/modules/dragen/vc_metrics.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/dragen 2024-05-17T11:39:49,613 copying build/lib/multiqc/modules/dragen/time_metrics.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/dragen 2024-05-17T11:39:49,615 copying build/lib/multiqc/modules/dragen/mapping_metrics.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/dragen 2024-05-17T11:39:49,618 copying build/lib/multiqc/modules/dragen/coverage_per_contig.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/dragen 2024-05-17T11:39:49,621 copying build/lib/multiqc/modules/dragen/dragen_gc_metrics.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/dragen 2024-05-17T11:39:49,623 copying build/lib/multiqc/modules/dragen/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/dragen 2024-05-17T11:39:49,625 copying build/lib/multiqc/modules/dragen/overall_mean_cov.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/dragen 2024-05-17T11:39:49,628 copying build/lib/multiqc/modules/dragen/trimmer_metrics.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/dragen 2024-05-17T11:39:49,629 copying build/lib/multiqc/modules/dragen/sc_rna_metrics.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/dragen 2024-05-17T11:39:49,631 copying build/lib/multiqc/modules/dragen/sc_atac_metrics.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/dragen 2024-05-17T11:39:49,633 copying build/lib/multiqc/modules/dragen/coverage_metrics.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/dragen 2024-05-17T11:39:49,637 copying build/lib/multiqc/modules/dragen/fragment_length.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/dragen 2024-05-17T11:39:49,638 copying build/lib/multiqc/modules/dragen/rna_transcript_cov.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/dragen 2024-05-17T11:39:49,641 creating build/bdist.linux-armv7l/wheel/multiqc/modules/sourmash 2024-05-17T11:39:49,641 copying build/lib/multiqc/modules/sourmash/gather.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/sourmash 2024-05-17T11:39:49,644 copying build/lib/multiqc/modules/sourmash/compare.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/sourmash 2024-05-17T11:39:49,646 copying build/lib/multiqc/modules/sourmash/sourmash.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/sourmash 2024-05-17T11:39:49,648 copying build/lib/multiqc/modules/sourmash/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/sourmash 2024-05-17T11:39:49,651 creating build/bdist.linux-armv7l/wheel/multiqc/modules/prinseqplusplus 2024-05-17T11:39:49,652 copying build/lib/multiqc/modules/prinseqplusplus/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/prinseqplusplus 2024-05-17T11:39:49,654 copying build/lib/multiqc/modules/prinseqplusplus/prinseqplusplus.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/prinseqplusplus 2024-05-17T11:39:49,657 creating build/bdist.linux-armv7l/wheel/multiqc/modules/pycoqc 2024-05-17T11:39:49,657 copying build/lib/multiqc/modules/pycoqc/pycoqc.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/pycoqc 2024-05-17T11:39:49,660 copying build/lib/multiqc/modules/pycoqc/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/pycoqc 2024-05-17T11:39:49,662 copying build/lib/multiqc/modules/profile_runtime.py -> build/bdist.linux-armv7l/wheel/multiqc/modules 2024-05-17T11:39:49,665 creating build/bdist.linux-armv7l/wheel/multiqc/modules/mapdamage 2024-05-17T11:39:49,666 copying build/lib/multiqc/modules/mapdamage/mapdamage.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/mapdamage 2024-05-17T11:39:49,669 copying build/lib/multiqc/modules/mapdamage/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/mapdamage 2024-05-17T11:39:49,672 creating build/bdist.linux-armv7l/wheel/multiqc/modules/gatk 2024-05-17T11:39:49,673 copying build/lib/multiqc/modules/gatk/gatk.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/gatk 2024-05-17T11:39:49,675 copying build/lib/multiqc/modules/gatk/varianteval.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/gatk 2024-05-17T11:39:49,678 copying build/lib/multiqc/modules/gatk/analyze_saturation_mutagenesis.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/gatk 2024-05-17T11:39:49,680 copying build/lib/multiqc/modules/gatk/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/gatk 2024-05-17T11:39:49,682 copying build/lib/multiqc/modules/gatk/base_recalibrator.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/gatk 2024-05-17T11:39:49,685 creating build/bdist.linux-armv7l/wheel/multiqc/modules/spaceranger 2024-05-17T11:39:49,686 copying build/lib/multiqc/modules/spaceranger/_utils.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/spaceranger 2024-05-17T11:39:49,689 copying build/lib/multiqc/modules/spaceranger/count.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/spaceranger 2024-05-17T11:39:49,692 copying build/lib/multiqc/modules/spaceranger/spaceranger.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/spaceranger 2024-05-17T11:39:49,694 copying build/lib/multiqc/modules/spaceranger/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/spaceranger 2024-05-17T11:39:49,697 creating build/bdist.linux-armv7l/wheel/multiqc/modules/stacks 2024-05-17T11:39:49,698 copying build/lib/multiqc/modules/stacks/stacks.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/stacks 2024-05-17T11:39:49,700 copying build/lib/multiqc/modules/stacks/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/stacks 2024-05-17T11:39:49,702 creating build/bdist.linux-armv7l/wheel/multiqc/modules/nanostat 2024-05-17T11:39:49,703 copying build/lib/multiqc/modules/nanostat/nanostat.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/nanostat 2024-05-17T11:39:49,706 copying build/lib/multiqc/modules/nanostat/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/nanostat 2024-05-17T11:39:49,709 creating build/bdist.linux-armv7l/wheel/multiqc/modules/sambamba 2024-05-17T11:39:49,710 copying build/lib/multiqc/modules/sambamba/sambamba.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/sambamba 2024-05-17T11:39:49,712 copying build/lib/multiqc/modules/sambamba/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/sambamba 2024-05-17T11:39:49,714 copying build/lib/multiqc/modules/sambamba/markdup.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/sambamba 2024-05-17T11:39:49,717 creating build/bdist.linux-armv7l/wheel/multiqc/modules/theta2 2024-05-17T11:39:49,718 copying build/lib/multiqc/modules/theta2/theta2.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/theta2 2024-05-17T11:39:49,720 copying build/lib/multiqc/modules/theta2/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/theta2 2024-05-17T11:39:49,722 creating build/bdist.linux-armv7l/wheel/multiqc/modules/xenome 2024-05-17T11:39:49,723 copying build/lib/multiqc/modules/xenome/xenome.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/xenome 2024-05-17T11:39:49,725 copying build/lib/multiqc/modules/xenome/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/xenome 2024-05-17T11:39:49,728 creating build/bdist.linux-armv7l/wheel/multiqc/modules/skewer 2024-05-17T11:39:49,728 copying build/lib/multiqc/modules/skewer/skewer.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/skewer 2024-05-17T11:39:49,731 copying build/lib/multiqc/modules/skewer/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/skewer 2024-05-17T11:39:49,733 creating build/bdist.linux-armv7l/wheel/multiqc/modules/anglerfish 2024-05-17T11:39:49,734 copying build/lib/multiqc/modules/anglerfish/anglerfish.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/anglerfish 2024-05-17T11:39:49,737 copying build/lib/multiqc/modules/anglerfish/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/anglerfish 2024-05-17T11:39:49,740 creating build/bdist.linux-armv7l/wheel/multiqc/modules/biscuit 2024-05-17T11:39:49,741 copying build/lib/multiqc/modules/biscuit/biscuit.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/biscuit 2024-05-17T11:39:49,744 copying build/lib/multiqc/modules/biscuit/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/biscuit 2024-05-17T11:39:49,746 creating build/bdist.linux-armv7l/wheel/multiqc/modules/gffcompare 2024-05-17T11:39:49,747 copying build/lib/multiqc/modules/gffcompare/gffcompare.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/gffcompare 2024-05-17T11:39:49,750 copying build/lib/multiqc/modules/gffcompare/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/gffcompare 2024-05-17T11:39:49,752 creating build/bdist.linux-armv7l/wheel/multiqc/modules/bowtie2 2024-05-17T11:39:49,753 copying build/lib/multiqc/modules/bowtie2/bowtie2.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/bowtie2 2024-05-17T11:39:49,756 copying build/lib/multiqc/modules/bowtie2/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/bowtie2 2024-05-17T11:39:49,758 creating build/bdist.linux-armv7l/wheel/multiqc/modules/bracken 2024-05-17T11:39:49,759 copying build/lib/multiqc/modules/bracken/bracken.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/bracken 2024-05-17T11:39:49,761 copying build/lib/multiqc/modules/bracken/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/bracken 2024-05-17T11:39:49,764 creating build/bdist.linux-armv7l/wheel/multiqc/modules/interop 2024-05-17T11:39:49,765 copying build/lib/multiqc/modules/interop/interop.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/interop 2024-05-17T11:39:49,768 copying build/lib/multiqc/modules/interop/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/interop 2024-05-17T11:39:49,772 creating build/bdist.linux-armv7l/wheel/multiqc/modules/umitools 2024-05-17T11:39:49,774 copying build/lib/multiqc/modules/umitools/umitools.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/umitools 2024-05-17T11:39:49,776 copying build/lib/multiqc/modules/umitools/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/umitools 2024-05-17T11:39:49,778 creating build/bdist.linux-armv7l/wheel/multiqc/modules/jcvi 2024-05-17T11:39:49,779 copying build/lib/multiqc/modules/jcvi/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/jcvi 2024-05-17T11:39:49,781 copying build/lib/multiqc/modules/jcvi/jcvi.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/jcvi 2024-05-17T11:39:49,784 creating build/bdist.linux-armv7l/wheel/multiqc/modules/fastqc 2024-05-17T11:39:49,785 creating build/bdist.linux-armv7l/wheel/multiqc/modules/fastqc/fastqc_theoretical_gc 2024-05-17T11:39:49,786 copying build/lib/multiqc/modules/fastqc/fastqc_theoretical_gc/fastqc_theoretical_gc_mm10_genome.txt -> build/bdist.linux-armv7l/wheel/multiqc/modules/fastqc/fastqc_theoretical_gc 2024-05-17T11:39:49,789 copying build/lib/multiqc/modules/fastqc/fastqc_theoretical_gc/fastqc_theoretical_gc_mm10_txome.txt -> build/bdist.linux-armv7l/wheel/multiqc/modules/fastqc/fastqc_theoretical_gc 2024-05-17T11:39:49,792 copying build/lib/multiqc/modules/fastqc/fastqc_theoretical_gc/fastqc_theoretical_gc_hg38_genome.txt -> build/bdist.linux-armv7l/wheel/multiqc/modules/fastqc/fastqc_theoretical_gc 2024-05-17T11:39:49,795 copying build/lib/multiqc/modules/fastqc/fastqc_theoretical_gc/fastqc_theoretical_gc_hg38_txome.txt -> build/bdist.linux-armv7l/wheel/multiqc/modules/fastqc/fastqc_theoretical_gc 2024-05-17T11:39:49,800 creating build/bdist.linux-armv7l/wheel/multiqc/modules/fastqc/assets 2024-05-17T11:39:49,802 creating build/bdist.linux-armv7l/wheel/multiqc/modules/fastqc/assets/css 2024-05-17T11:39:49,804 copying build/lib/multiqc/modules/fastqc/assets/css/multiqc_fastqc.css -> build/bdist.linux-armv7l/wheel/multiqc/modules/fastqc/assets/css 2024-05-17T11:39:49,810 creating build/bdist.linux-armv7l/wheel/multiqc/modules/fastqc/assets/js 2024-05-17T11:39:49,813 copying build/lib/multiqc/modules/fastqc/assets/js/multiqc_fastqc.js -> build/bdist.linux-armv7l/wheel/multiqc/modules/fastqc/assets/js 2024-05-17T11:39:49,819 copying build/lib/multiqc/modules/fastqc/fastqc.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/fastqc 2024-05-17T11:39:49,823 copying build/lib/multiqc/modules/fastqc/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/fastqc 2024-05-17T11:39:49,825 creating build/bdist.linux-armv7l/wheel/multiqc/modules/prokka 2024-05-17T11:39:49,826 copying build/lib/multiqc/modules/prokka/prokka.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/prokka 2024-05-17T11:39:49,829 copying build/lib/multiqc/modules/prokka/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/prokka 2024-05-17T11:39:49,832 creating build/bdist.linux-armv7l/wheel/multiqc/modules/damageprofiler 2024-05-17T11:39:49,833 copying build/lib/multiqc/modules/damageprofiler/damageprofiler.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/damageprofiler 2024-05-17T11:39:49,836 copying build/lib/multiqc/modules/damageprofiler/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/damageprofiler 2024-05-17T11:39:49,838 creating build/bdist.linux-armv7l/wheel/multiqc/modules/snippy 2024-05-17T11:39:49,839 copying build/lib/multiqc/modules/snippy/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/snippy 2024-05-17T11:39:49,841 copying build/lib/multiqc/modules/snippy/snippy.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/snippy 2024-05-17T11:39:49,844 creating build/bdist.linux-armv7l/wheel/multiqc/modules/sickle 2024-05-17T11:39:49,845 copying build/lib/multiqc/modules/sickle/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/sickle 2024-05-17T11:39:49,846 copying build/lib/multiqc/modules/sickle/sickle.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/sickle 2024-05-17T11:39:49,849 creating build/bdist.linux-armv7l/wheel/multiqc/modules/kraken 2024-05-17T11:39:49,850 copying build/lib/multiqc/modules/kraken/kraken.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/kraken 2024-05-17T11:39:49,852 copying build/lib/multiqc/modules/kraken/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/kraken 2024-05-17T11:39:49,854 creating build/bdist.linux-armv7l/wheel/multiqc/modules/sargasso 2024-05-17T11:39:49,855 copying build/lib/multiqc/modules/sargasso/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/sargasso 2024-05-17T11:39:49,857 copying build/lib/multiqc/modules/sargasso/sargasso.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/sargasso 2024-05-17T11:39:49,859 creating build/bdist.linux-armv7l/wheel/multiqc/modules/bowtie1 2024-05-17T11:39:49,860 copying build/lib/multiqc/modules/bowtie1/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/bowtie1 2024-05-17T11:39:49,862 copying build/lib/multiqc/modules/bowtie1/bowtie1.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/bowtie1 2024-05-17T11:39:49,865 creating build/bdist.linux-armv7l/wheel/multiqc/modules/hicup 2024-05-17T11:39:49,865 copying build/lib/multiqc/modules/hicup/hicup.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/hicup 2024-05-17T11:39:49,868 copying build/lib/multiqc/modules/hicup/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/hicup 2024-05-17T11:39:49,870 creating build/bdist.linux-armv7l/wheel/multiqc/modules/macs2 2024-05-17T11:39:49,871 copying build/lib/multiqc/modules/macs2/macs2.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/macs2 2024-05-17T11:39:49,874 copying build/lib/multiqc/modules/macs2/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/macs2 2024-05-17T11:39:49,878 creating build/bdist.linux-armv7l/wheel/multiqc/modules/hisat2 2024-05-17T11:39:49,879 copying build/lib/multiqc/modules/hisat2/hisat2.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/hisat2 2024-05-17T11:39:49,883 copying build/lib/multiqc/modules/hisat2/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/hisat2 2024-05-17T11:39:49,886 creating build/bdist.linux-armv7l/wheel/multiqc/modules/vcftools 2024-05-17T11:39:49,887 copying build/lib/multiqc/modules/vcftools/tstv_by_count.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/vcftools 2024-05-17T11:39:49,889 copying build/lib/multiqc/modules/vcftools/tstv_by_qual.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/vcftools 2024-05-17T11:39:49,892 copying build/lib/multiqc/modules/vcftools/vcftools.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/vcftools 2024-05-17T11:39:49,894 copying build/lib/multiqc/modules/vcftools/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/vcftools 2024-05-17T11:39:49,896 copying build/lib/multiqc/modules/vcftools/relatedness2.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/vcftools 2024-05-17T11:39:49,899 copying build/lib/multiqc/modules/vcftools/tstv_summary.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/vcftools 2024-05-17T11:39:49,902 creating build/bdist.linux-armv7l/wheel/multiqc/modules/varscan2 2024-05-17T11:39:49,903 copying build/lib/multiqc/modules/varscan2/varscan2.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/varscan2 2024-05-17T11:39:49,906 copying build/lib/multiqc/modules/varscan2/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/varscan2 2024-05-17T11:39:49,909 creating build/bdist.linux-armv7l/wheel/multiqc/modules/bustools 2024-05-17T11:39:49,910 copying build/lib/multiqc/modules/bustools/bustools.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/bustools 2024-05-17T11:39:49,913 copying build/lib/multiqc/modules/bustools/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/bustools 2024-05-17T11:39:49,916 creating build/bdist.linux-armv7l/wheel/multiqc/modules/hops 2024-05-17T11:39:49,917 copying build/lib/multiqc/modules/hops/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/hops 2024-05-17T11:39:49,920 copying build/lib/multiqc/modules/hops/hops.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/hops 2024-05-17T11:39:49,923 creating build/bdist.linux-armv7l/wheel/multiqc/modules/tophat 2024-05-17T11:39:49,924 copying build/lib/multiqc/modules/tophat/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/tophat 2024-05-17T11:39:49,927 copying build/lib/multiqc/modules/tophat/tophat.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/tophat 2024-05-17T11:39:49,930 creating build/bdist.linux-armv7l/wheel/multiqc/modules/custom_content 2024-05-17T11:39:49,931 copying build/lib/multiqc/modules/custom_content/custom_content.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/custom_content 2024-05-17T11:39:49,934 copying build/lib/multiqc/modules/custom_content/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/custom_content 2024-05-17T11:39:49,937 creating build/bdist.linux-armv7l/wheel/multiqc/modules/clusterflow 2024-05-17T11:39:49,938 copying build/lib/multiqc/modules/clusterflow/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/clusterflow 2024-05-17T11:39:49,941 copying build/lib/multiqc/modules/clusterflow/clusterflow.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/clusterflow 2024-05-17T11:39:49,944 creating build/bdist.linux-armv7l/wheel/multiqc/modules/pychopper 2024-05-17T11:39:49,946 copying build/lib/multiqc/modules/pychopper/pychopper.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/pychopper 2024-05-17T11:39:49,949 copying build/lib/multiqc/modules/pychopper/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/pychopper 2024-05-17T11:39:49,952 creating build/bdist.linux-armv7l/wheel/multiqc/modules/bclconvert 2024-05-17T11:39:49,953 copying build/lib/multiqc/modules/bclconvert/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/bclconvert 2024-05-17T11:39:49,956 copying build/lib/multiqc/modules/bclconvert/bclconvert.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/bclconvert 2024-05-17T11:39:49,961 creating build/bdist.linux-armv7l/wheel/multiqc/modules/afterqc 2024-05-17T11:39:49,963 copying build/lib/multiqc/modules/afterqc/afterqc.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/afterqc 2024-05-17T11:39:49,967 copying build/lib/multiqc/modules/afterqc/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/afterqc 2024-05-17T11:39:49,970 creating build/bdist.linux-armv7l/wheel/multiqc/modules/nextclade 2024-05-17T11:39:49,972 copying build/lib/multiqc/modules/nextclade/nextclade.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/nextclade 2024-05-17T11:39:49,976 copying build/lib/multiqc/modules/nextclade/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/nextclade 2024-05-17T11:39:49,979 creating build/bdist.linux-armv7l/wheel/multiqc/modules/motus 2024-05-17T11:39:49,980 copying build/lib/multiqc/modules/motus/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/motus 2024-05-17T11:39:49,983 copying build/lib/multiqc/modules/motus/motus.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/motus 2024-05-17T11:39:49,988 creating build/bdist.linux-armv7l/wheel/multiqc/modules/rseqc 2024-05-17T11:39:49,990 copying build/lib/multiqc/modules/rseqc/gene_body_coverage.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/rseqc 2024-05-17T11:39:49,993 copying build/lib/multiqc/modules/rseqc/read_duplication.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/rseqc 2024-05-17T11:39:49,996 copying build/lib/multiqc/modules/rseqc/junction_saturation.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/rseqc 2024-05-17T11:39:50,000 copying build/lib/multiqc/modules/rseqc/rseqc.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/rseqc 2024-05-17T11:39:50,002 copying build/lib/multiqc/modules/rseqc/inner_distance.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/rseqc 2024-05-17T11:39:50,005 creating build/bdist.linux-armv7l/wheel/multiqc/modules/rseqc/assets 2024-05-17T11:39:50,007 creating build/bdist.linux-armv7l/wheel/multiqc/modules/rseqc/assets/js 2024-05-17T11:39:50,008 copying build/lib/multiqc/modules/rseqc/assets/js/multiqc_rseqc.js -> build/bdist.linux-armv7l/wheel/multiqc/modules/rseqc/assets/js 2024-05-17T11:39:50,010 copying build/lib/multiqc/modules/rseqc/infer_experiment.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/rseqc 2024-05-17T11:39:50,012 copying build/lib/multiqc/modules/rseqc/junction_annotation.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/rseqc 2024-05-17T11:39:50,014 copying build/lib/multiqc/modules/rseqc/read_gc.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/rseqc 2024-05-17T11:39:50,017 copying build/lib/multiqc/modules/rseqc/read_distribution.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/rseqc 2024-05-17T11:39:50,019 copying build/lib/multiqc/modules/rseqc/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/rseqc 2024-05-17T11:39:50,021 copying build/lib/multiqc/modules/rseqc/tin.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/rseqc 2024-05-17T11:39:50,023 copying build/lib/multiqc/modules/rseqc/bam_stat.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/rseqc 2024-05-17T11:39:50,026 creating build/bdist.linux-armv7l/wheel/multiqc/modules/purple 2024-05-17T11:39:50,027 copying build/lib/multiqc/modules/purple/purple.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/purple 2024-05-17T11:39:50,030 copying build/lib/multiqc/modules/purple/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/purple 2024-05-17T11:39:50,033 creating build/bdist.linux-armv7l/wheel/multiqc/modules/freyja 2024-05-17T11:39:50,034 copying build/lib/multiqc/modules/freyja/freyja.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/freyja 2024-05-17T11:39:50,037 copying build/lib/multiqc/modules/freyja/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/freyja 2024-05-17T11:39:50,040 creating build/bdist.linux-armv7l/wheel/multiqc/modules/malt 2024-05-17T11:39:50,041 copying build/lib/multiqc/modules/malt/malt.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/malt 2024-05-17T11:39:50,044 copying build/lib/multiqc/modules/malt/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/malt 2024-05-17T11:39:50,046 creating build/bdist.linux-armv7l/wheel/multiqc/modules/peddy 2024-05-17T11:39:50,047 copying build/lib/multiqc/modules/peddy/peddy.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/peddy 2024-05-17T11:39:50,051 copying build/lib/multiqc/modules/peddy/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/peddy 2024-05-17T11:39:50,053 creating build/bdist.linux-armv7l/wheel/multiqc/modules/pbmarkdup 2024-05-17T11:39:50,054 copying build/lib/multiqc/modules/pbmarkdup/pbmarkdup.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/pbmarkdup 2024-05-17T11:39:50,057 copying build/lib/multiqc/modules/pbmarkdup/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/pbmarkdup 2024-05-17T11:39:50,060 creating build/bdist.linux-armv7l/wheel/multiqc/modules/qc3C 2024-05-17T11:39:50,062 copying build/lib/multiqc/modules/qc3C/qc3C.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/qc3C 2024-05-17T11:39:50,066 copying build/lib/multiqc/modules/qc3C/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/qc3C 2024-05-17T11:39:50,068 creating build/bdist.linux-armv7l/wheel/multiqc/modules/mtnucratio 2024-05-17T11:39:50,069 copying build/lib/multiqc/modules/mtnucratio/mtnucratio.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/mtnucratio 2024-05-17T11:39:50,072 copying build/lib/multiqc/modules/mtnucratio/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/mtnucratio 2024-05-17T11:39:50,075 creating build/bdist.linux-armv7l/wheel/multiqc/modules/happy 2024-05-17T11:39:50,076 copying build/lib/multiqc/modules/happy/happy.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/happy 2024-05-17T11:39:50,079 copying build/lib/multiqc/modules/happy/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/happy 2024-05-17T11:39:50,081 copying build/lib/multiqc/modules/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules 2024-05-17T11:39:50,083 creating build/bdist.linux-armv7l/wheel/multiqc/modules/samtools 2024-05-17T11:39:50,084 copying build/lib/multiqc/modules/samtools/flagstat.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/samtools 2024-05-17T11:39:50,087 copying build/lib/multiqc/modules/samtools/idxstats.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/samtools 2024-05-17T11:39:50,089 copying build/lib/multiqc/modules/samtools/coverage.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/samtools 2024-05-17T11:39:50,092 copying build/lib/multiqc/modules/samtools/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/samtools 2024-05-17T11:39:50,094 copying build/lib/multiqc/modules/samtools/rmdup.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/samtools 2024-05-17T11:39:50,097 copying build/lib/multiqc/modules/samtools/stats.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/samtools 2024-05-17T11:39:50,099 copying build/lib/multiqc/modules/samtools/samtools.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/samtools 2024-05-17T11:39:50,102 copying build/lib/multiqc/modules/samtools/markdup.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/samtools 2024-05-17T11:39:50,105 creating build/bdist.linux-armv7l/wheel/multiqc/modules/hicexplorer 2024-05-17T11:39:50,106 copying build/lib/multiqc/modules/hicexplorer/hicexplorer.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/hicexplorer 2024-05-17T11:39:50,109 copying build/lib/multiqc/modules/hicexplorer/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/hicexplorer 2024-05-17T11:39:50,112 creating build/bdist.linux-armv7l/wheel/multiqc/modules/seqyclean 2024-05-17T11:39:50,113 copying build/lib/multiqc/modules/seqyclean/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/seqyclean 2024-05-17T11:39:50,117 copying build/lib/multiqc/modules/seqyclean/seqyclean.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/seqyclean 2024-05-17T11:39:50,120 creating build/bdist.linux-armv7l/wheel/multiqc/modules/htseq 2024-05-17T11:39:50,121 copying build/lib/multiqc/modules/htseq/htseq.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/htseq 2024-05-17T11:39:50,124 copying build/lib/multiqc/modules/htseq/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/htseq 2024-05-17T11:39:50,127 creating build/bdist.linux-armv7l/wheel/multiqc/modules/bcftools 2024-05-17T11:39:50,128 copying build/lib/multiqc/modules/bcftools/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/bcftools 2024-05-17T11:39:50,130 copying build/lib/multiqc/modules/bcftools/stats.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/bcftools 2024-05-17T11:39:50,133 copying build/lib/multiqc/modules/bcftools/bcftools.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/bcftools 2024-05-17T11:39:50,136 creating build/bdist.linux-armv7l/wheel/multiqc/modules/bamtools 2024-05-17T11:39:50,137 copying build/lib/multiqc/modules/bamtools/bamtools.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/bamtools 2024-05-17T11:39:50,140 copying build/lib/multiqc/modules/bamtools/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/bamtools 2024-05-17T11:39:50,142 copying build/lib/multiqc/modules/bamtools/stats.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/bamtools 2024-05-17T11:39:50,145 creating build/bdist.linux-armv7l/wheel/multiqc/modules/mosdepth 2024-05-17T11:39:50,146 copying build/lib/multiqc/modules/mosdepth/mosdepth.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/mosdepth 2024-05-17T11:39:50,150 copying build/lib/multiqc/modules/mosdepth/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/mosdepth 2024-05-17T11:39:50,153 creating build/bdist.linux-armv7l/wheel/multiqc/modules/gopeaks 2024-05-17T11:39:50,154 copying build/lib/multiqc/modules/gopeaks/gopeaks.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/gopeaks 2024-05-17T11:39:50,157 copying build/lib/multiqc/modules/gopeaks/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/gopeaks 2024-05-17T11:39:50,159 creating build/bdist.linux-armv7l/wheel/multiqc/modules/fastp 2024-05-17T11:39:50,160 copying build/lib/multiqc/modules/fastp/fastp.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/fastp 2024-05-17T11:39:50,164 copying build/lib/multiqc/modules/fastp/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/fastp 2024-05-17T11:39:50,166 creating build/bdist.linux-armv7l/wheel/multiqc/modules/samblaster 2024-05-17T11:39:50,167 copying build/lib/multiqc/modules/samblaster/samblaster.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/samblaster 2024-05-17T11:39:50,170 copying build/lib/multiqc/modules/samblaster/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/samblaster 2024-05-17T11:39:50,173 creating build/bdist.linux-armv7l/wheel/multiqc/modules/pangolin 2024-05-17T11:39:50,174 copying build/lib/multiqc/modules/pangolin/pangolin.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/pangolin 2024-05-17T11:39:50,176 copying build/lib/multiqc/modules/pangolin/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/pangolin 2024-05-17T11:39:50,179 creating build/bdist.linux-armv7l/wheel/multiqc/modules/mirtop 2024-05-17T11:39:50,179 copying build/lib/multiqc/modules/mirtop/mirtop.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/mirtop 2024-05-17T11:39:50,182 copying build/lib/multiqc/modules/mirtop/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/mirtop 2024-05-17T11:39:50,184 creating build/bdist.linux-armv7l/wheel/multiqc/modules/verifybamid 2024-05-17T11:39:50,185 copying build/lib/multiqc/modules/verifybamid/verifybamid.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/verifybamid 2024-05-17T11:39:50,188 copying build/lib/multiqc/modules/verifybamid/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/verifybamid 2024-05-17T11:39:50,190 creating build/bdist.linux-armv7l/wheel/multiqc/modules/flexbar 2024-05-17T11:39:50,191 copying build/lib/multiqc/modules/flexbar/flexbar.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/flexbar 2024-05-17T11:39:50,194 copying build/lib/multiqc/modules/flexbar/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/flexbar 2024-05-17T11:39:50,196 creating build/bdist.linux-armv7l/wheel/multiqc/modules/seqwho 2024-05-17T11:39:50,197 copying build/lib/multiqc/modules/seqwho/seqwho.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/seqwho 2024-05-17T11:39:50,200 copying build/lib/multiqc/modules/seqwho/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/seqwho 2024-05-17T11:39:50,203 creating build/bdist.linux-armv7l/wheel/multiqc/modules/hicpro 2024-05-17T11:39:50,204 copying build/lib/multiqc/modules/hicpro/hicpro.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/hicpro 2024-05-17T11:39:50,207 copying build/lib/multiqc/modules/hicpro/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/hicpro 2024-05-17T11:39:50,211 creating build/bdist.linux-armv7l/wheel/multiqc/modules/diamond 2024-05-17T11:39:50,212 copying build/lib/multiqc/modules/diamond/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/diamond 2024-05-17T11:39:50,216 copying build/lib/multiqc/modules/diamond/diamond.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/diamond 2024-05-17T11:39:50,221 creating build/bdist.linux-armv7l/wheel/multiqc/modules/disambiguate 2024-05-17T11:39:50,222 copying build/lib/multiqc/modules/disambiguate/disambiguate.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/disambiguate 2024-05-17T11:39:50,224 copying build/lib/multiqc/modules/disambiguate/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/disambiguate 2024-05-17T11:39:50,227 creating build/bdist.linux-armv7l/wheel/multiqc/modules/preseq 2024-05-17T11:39:50,228 copying build/lib/multiqc/modules/preseq/preseq.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/preseq 2024-05-17T11:39:50,230 copying build/lib/multiqc/modules/preseq/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/preseq 2024-05-17T11:39:50,232 creating build/bdist.linux-armv7l/wheel/multiqc/modules/qorts 2024-05-17T11:39:50,233 copying build/lib/multiqc/modules/qorts/qorts.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/qorts 2024-05-17T11:39:50,236 copying build/lib/multiqc/modules/qorts/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/qorts 2024-05-17T11:39:50,238 creating build/bdist.linux-armv7l/wheel/multiqc/modules/kallisto 2024-05-17T11:39:50,239 copying build/lib/multiqc/modules/kallisto/kallisto.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/kallisto 2024-05-17T11:39:50,242 copying build/lib/multiqc/modules/kallisto/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/kallisto 2024-05-17T11:39:50,245 creating build/bdist.linux-armv7l/wheel/multiqc/modules/optitype 2024-05-17T11:39:50,246 copying build/lib/multiqc/modules/optitype/optitype.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/optitype 2024-05-17T11:39:50,248 copying build/lib/multiqc/modules/optitype/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/optitype 2024-05-17T11:39:50,250 creating build/bdist.linux-armv7l/wheel/multiqc/modules/rockhopper 2024-05-17T11:39:50,251 copying build/lib/multiqc/modules/rockhopper/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/rockhopper 2024-05-17T11:39:50,253 copying build/lib/multiqc/modules/rockhopper/rockhopper.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/rockhopper 2024-05-17T11:39:50,257 creating build/bdist.linux-armv7l/wheel/multiqc/modules/librarian 2024-05-17T11:39:50,258 copying build/lib/multiqc/modules/librarian/librarian.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/librarian 2024-05-17T11:39:50,263 copying build/lib/multiqc/modules/librarian/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/librarian 2024-05-17T11:39:50,265 creating build/bdist.linux-armv7l/wheel/multiqc/modules/leehom 2024-05-17T11:39:50,266 copying build/lib/multiqc/modules/leehom/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/leehom 2024-05-17T11:39:50,268 copying build/lib/multiqc/modules/leehom/leehom.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/leehom 2024-05-17T11:39:50,270 creating build/bdist.linux-armv7l/wheel/multiqc/modules/ivar 2024-05-17T11:39:50,272 copying build/lib/multiqc/modules/ivar/ivar.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/ivar 2024-05-17T11:39:50,274 copying build/lib/multiqc/modules/ivar/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/ivar 2024-05-17T11:39:50,276 creating build/bdist.linux-armv7l/wheel/multiqc/modules/star 2024-05-17T11:39:50,277 copying build/lib/multiqc/modules/star/star.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/star 2024-05-17T11:39:50,280 copying build/lib/multiqc/modules/star/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/star 2024-05-17T11:39:50,282 creating build/bdist.linux-armv7l/wheel/multiqc/modules/hostile 2024-05-17T11:39:50,283 copying build/lib/multiqc/modules/hostile/hostile.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/hostile 2024-05-17T11:39:50,285 copying build/lib/multiqc/modules/hostile/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/hostile 2024-05-17T11:39:50,288 creating build/bdist.linux-armv7l/wheel/multiqc/modules/biobloomtools 2024-05-17T11:39:50,289 copying build/lib/multiqc/modules/biobloomtools/biobloomtools.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/biobloomtools 2024-05-17T11:39:50,291 copying build/lib/multiqc/modules/biobloomtools/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/biobloomtools 2024-05-17T11:39:50,293 creating build/bdist.linux-armv7l/wheel/multiqc/modules/multivcfanalyzer 2024-05-17T11:39:50,294 copying build/lib/multiqc/modules/multivcfanalyzer/multivcfanalyzer.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/multivcfanalyzer 2024-05-17T11:39:50,297 copying build/lib/multiqc/modules/multivcfanalyzer/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/multivcfanalyzer 2024-05-17T11:39:50,300 copying build/lib/multiqc/modules/software_versions.py -> build/bdist.linux-armv7l/wheel/multiqc/modules 2024-05-17T11:39:50,304 creating build/bdist.linux-armv7l/wheel/multiqc/modules/methylqa 2024-05-17T11:39:50,305 copying build/lib/multiqc/modules/methylqa/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/methylqa 2024-05-17T11:39:50,307 copying build/lib/multiqc/modules/methylqa/methylqa.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/methylqa 2024-05-17T11:39:50,311 creating build/bdist.linux-armv7l/wheel/multiqc/modules/minionqc 2024-05-17T11:39:50,312 copying build/lib/multiqc/modules/minionqc/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/minionqc 2024-05-17T11:39:50,314 copying build/lib/multiqc/modules/minionqc/minionqc.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/minionqc 2024-05-17T11:39:50,317 creating build/bdist.linux-armv7l/wheel/multiqc/modules/seqera_cli 2024-05-17T11:39:50,318 copying build/lib/multiqc/modules/seqera_cli/seqera_cli.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/seqera_cli 2024-05-17T11:39:50,320 copying build/lib/multiqc/modules/seqera_cli/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/seqera_cli 2024-05-17T11:39:50,323 creating build/bdist.linux-armv7l/wheel/multiqc/modules/somalier 2024-05-17T11:39:50,324 copying build/lib/multiqc/modules/somalier/somalier.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/somalier 2024-05-17T11:39:50,327 copying build/lib/multiqc/modules/somalier/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/somalier 2024-05-17T11:39:50,329 creating build/bdist.linux-armv7l/wheel/multiqc/modules/longranger 2024-05-17T11:39:50,330 copying build/lib/multiqc/modules/longranger/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/longranger 2024-05-17T11:39:50,331 copying build/lib/multiqc/modules/longranger/longranger.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/longranger 2024-05-17T11:39:50,334 creating build/bdist.linux-armv7l/wheel/multiqc/modules/humid 2024-05-17T11:39:50,335 copying build/lib/multiqc/modules/humid/humid.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/humid 2024-05-17T11:39:50,337 copying build/lib/multiqc/modules/humid/counts.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/humid 2024-05-17T11:39:50,339 copying build/lib/multiqc/modules/humid/neighbours.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/humid 2024-05-17T11:39:50,341 copying build/lib/multiqc/modules/humid/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/humid 2024-05-17T11:39:50,343 copying build/lib/multiqc/modules/humid/stats.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/humid 2024-05-17T11:39:50,346 copying build/lib/multiqc/modules/humid/clusters.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/humid 2024-05-17T11:39:50,349 creating build/bdist.linux-armv7l/wheel/multiqc/modules/mirtrace 2024-05-17T11:39:50,350 copying build/lib/multiqc/modules/mirtrace/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/mirtrace 2024-05-17T11:39:50,353 copying build/lib/multiqc/modules/mirtrace/mirtrace.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/mirtrace 2024-05-17T11:39:50,356 running install_egg_info 2024-05-17T11:39:50,359 Copying multiqc.egg-info to build/bdist.linux-armv7l/wheel/multiqc-1.22.1-py3.11.egg-info 2024-05-17T11:39:50,374 running install_scripts 2024-05-17T11:39:50,401 creating build/bdist.linux-armv7l/wheel/multiqc-1.22.1.dist-info/WHEEL 2024-05-17T11:39:50,404 creating '/tmp/pip-wheel-jdfvmd_r/.tmp-avdebbk1/multiqc-1.22.1-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2024-05-17T11:39:50,406 adding 'multiqc/__init__.py' 2024-05-17T11:39:50,407 adding 'multiqc/__main__.py' 2024-05-17T11:39:50,411 adding 'multiqc/base_module.py' 2024-05-17T11:39:50,414 adding 'multiqc/config.py' 2024-05-17T11:39:50,416 adding 'multiqc/config_defaults.yaml' 2024-05-17T11:39:50,418 adding 'multiqc/interactive.py' 2024-05-17T11:39:50,421 adding 'multiqc/multiqc.py' 2024-05-17T11:39:50,426 adding 'multiqc/report.py' 2024-05-17T11:39:50,430 adding 'multiqc/search_patterns.yaml' 2024-05-17T11:39:50,432 adding 'multiqc/core/__init__.py' 2024-05-17T11:39:50,433 adding 'multiqc/core/exceptions.py' 2024-05-17T11:39:50,435 adding 'multiqc/core/exec_modules.py' 2024-05-17T11:39:50,436 adding 'multiqc/core/file_search.py' 2024-05-17T11:39:50,438 adding 'multiqc/core/init_log.py' 2024-05-17T11:39:50,439 adding 'multiqc/core/plugin_hooks.py' 2024-05-17T11:39:50,441 adding 'multiqc/core/software_versions.py' 2024-05-17T11:39:50,442 adding 'multiqc/core/strict_helpers.py' 2024-05-17T11:39:50,444 adding 'multiqc/core/update_config.py' 2024-05-17T11:39:50,446 adding 'multiqc/core/version_check.py' 2024-05-17T11:39:50,449 adding 'multiqc/core/write_results.py' 2024-05-17T11:39:50,453 adding 'multiqc/modules/__init__.py' 2024-05-17T11:39:50,455 adding 'multiqc/modules/profile_runtime.py' 2024-05-17T11:39:50,456 adding 'multiqc/modules/software_versions.py' 2024-05-17T11:39:50,459 adding 'multiqc/modules/adapterremoval/__init__.py' 2024-05-17T11:39:50,461 adding 'multiqc/modules/adapterremoval/adapterremoval.py' 2024-05-17T11:39:50,463 adding 'multiqc/modules/afterqc/__init__.py' 2024-05-17T11:39:50,464 adding 'multiqc/modules/afterqc/afterqc.py' 2024-05-17T11:39:50,466 adding 'multiqc/modules/anglerfish/__init__.py' 2024-05-17T11:39:50,468 adding 'multiqc/modules/anglerfish/anglerfish.py' 2024-05-17T11:39:50,470 adding 'multiqc/modules/bakta/__init__.py' 2024-05-17T11:39:50,471 adding 'multiqc/modules/bakta/bakta.py' 2024-05-17T11:39:50,473 adding 'multiqc/modules/bamdst/__init__.py' 2024-05-17T11:39:50,475 adding 'multiqc/modules/bamdst/bamdst.py' 2024-05-17T11:39:50,477 adding 'multiqc/modules/bamtools/__init__.py' 2024-05-17T11:39:50,479 adding 'multiqc/modules/bamtools/bamtools.py' 2024-05-17T11:39:50,480 adding 'multiqc/modules/bamtools/stats.py' 2024-05-17T11:39:50,482 adding 'multiqc/modules/bbduk/__init__.py' 2024-05-17T11:39:50,484 adding 'multiqc/modules/bbduk/bbduk.py' 2024-05-17T11:39:50,486 adding 'multiqc/modules/bbmap/__init__.py' 2024-05-17T11:39:50,488 adding 'multiqc/modules/bbmap/bbmap.py' 2024-05-17T11:39:50,490 adding 'multiqc/modules/bbmap/bbmap_filetypes.py' 2024-05-17T11:39:50,491 adding 'multiqc/modules/bbmap/plot_aqhist.py' 2024-05-17T11:39:50,492 adding 'multiqc/modules/bbmap/plot_basic_hist.py' 2024-05-17T11:39:50,494 adding 'multiqc/modules/bbmap/plot_bhist.py' 2024-05-17T11:39:50,495 adding 'multiqc/modules/bbmap/plot_bqhist.py' 2024-05-17T11:39:50,496 adding 'multiqc/modules/bbmap/plot_covhist.py' 2024-05-17T11:39:50,497 adding 'multiqc/modules/bbmap/plot_idhist.py' 2024-05-17T11:39:50,499 adding 'multiqc/modules/bbmap/plot_ihist.py' 2024-05-17T11:39:50,500 adding 'multiqc/modules/bbmap/plot_indelhist.py' 2024-05-17T11:39:50,501 adding 'multiqc/modules/bbmap/plot_mhist.py' 2024-05-17T11:39:50,503 adding 'multiqc/modules/bbmap/plot_qahist.py' 2024-05-17T11:39:50,504 adding 'multiqc/modules/bbmap/plot_qchist.py' 2024-05-17T11:39:50,505 adding 'multiqc/modules/bbmap/plot_qhist.py' 2024-05-17T11:39:50,507 adding 'multiqc/modules/bcftools/__init__.py' 2024-05-17T11:39:50,508 adding 'multiqc/modules/bcftools/bcftools.py' 2024-05-17T11:39:50,510 adding 'multiqc/modules/bcftools/stats.py' 2024-05-17T11:39:50,512 adding 'multiqc/modules/bcl2fastq/__init__.py' 2024-05-17T11:39:50,515 adding 'multiqc/modules/bcl2fastq/bcl2fastq.py' 2024-05-17T11:39:50,516 adding 'multiqc/modules/bclconvert/__init__.py' 2024-05-17T11:39:50,520 adding 'multiqc/modules/bclconvert/bclconvert.py' 2024-05-17T11:39:50,522 adding 'multiqc/modules/biobambam2/__init__.py' 2024-05-17T11:39:50,523 adding 'multiqc/modules/biobambam2/biobambam2.py' 2024-05-17T11:39:50,525 adding 'multiqc/modules/biobloomtools/__init__.py' 2024-05-17T11:39:50,526 adding 'multiqc/modules/biobloomtools/biobloomtools.py' 2024-05-17T11:39:50,528 adding 'multiqc/modules/biscuit/__init__.py' 2024-05-17T11:39:50,531 adding 'multiqc/modules/biscuit/biscuit.py' 2024-05-17T11:39:50,533 adding 'multiqc/modules/bismark/__init__.py' 2024-05-17T11:39:50,536 adding 'multiqc/modules/bismark/bismark.py' 2024-05-17T11:39:50,537 adding 'multiqc/modules/bowtie1/__init__.py' 2024-05-17T11:39:50,539 adding 'multiqc/modules/bowtie1/bowtie1.py' 2024-05-17T11:39:50,541 adding 'multiqc/modules/bowtie2/__init__.py' 2024-05-17T11:39:50,543 adding 'multiqc/modules/bowtie2/bowtie2.py' 2024-05-17T11:39:50,545 adding 'multiqc/modules/bracken/__init__.py' 2024-05-17T11:39:50,546 adding 'multiqc/modules/bracken/bracken.py' 2024-05-17T11:39:50,548 adding 'multiqc/modules/busco/__init__.py' 2024-05-17T11:39:50,549 adding 'multiqc/modules/busco/busco.py' 2024-05-17T11:39:50,551 adding 'multiqc/modules/bustools/__init__.py' 2024-05-17T11:39:50,553 adding 'multiqc/modules/bustools/bustools.py' 2024-05-17T11:39:50,554 adding 'multiqc/modules/ccs/__init__.py' 2024-05-17T11:39:50,557 adding 'multiqc/modules/ccs/ccs.py' 2024-05-17T11:39:50,558 adding 'multiqc/modules/cellranger/__init__.py' 2024-05-17T11:39:50,560 adding 'multiqc/modules/cellranger/cellranger.py' 2024-05-17T11:39:50,562 adding 'multiqc/modules/cellranger/count.py' 2024-05-17T11:39:50,564 adding 'multiqc/modules/cellranger/utils.py' 2024-05-17T11:39:50,566 adding 'multiqc/modules/cellranger/vdj.py' 2024-05-17T11:39:50,568 adding 'multiqc/modules/checkqc/__init__.py' 2024-05-17T11:39:50,570 adding 'multiqc/modules/checkqc/checkqc.py' 2024-05-17T11:39:50,572 adding 'multiqc/modules/clipandmerge/__init__.py' 2024-05-17T11:39:50,574 adding 'multiqc/modules/clipandmerge/clipandmerge.py' 2024-05-17T11:39:50,576 adding 'multiqc/modules/clusterflow/__init__.py' 2024-05-17T11:39:50,578 adding 'multiqc/modules/clusterflow/clusterflow.py' 2024-05-17T11:39:50,580 adding 'multiqc/modules/conpair/__init__.py' 2024-05-17T11:39:50,581 adding 'multiqc/modules/conpair/conpair.py' 2024-05-17T11:39:50,583 adding 'multiqc/modules/custom_content/__init__.py' 2024-05-17T11:39:50,586 adding 'multiqc/modules/custom_content/custom_content.py' 2024-05-17T11:39:50,588 adding 'multiqc/modules/cutadapt/__init__.py' 2024-05-17T11:39:50,591 adding 'multiqc/modules/cutadapt/cutadapt.py' 2024-05-17T11:39:50,592 adding 'multiqc/modules/damageprofiler/__init__.py' 2024-05-17T11:39:50,594 adding 'multiqc/modules/damageprofiler/damageprofiler.py' 2024-05-17T11:39:50,596 adding 'multiqc/modules/dedup/__init__.py' 2024-05-17T11:39:50,597 adding 'multiqc/modules/dedup/dedup.py' 2024-05-17T11:39:50,599 adding 'multiqc/modules/deeptools/__init__.py' 2024-05-17T11:39:50,601 adding 'multiqc/modules/deeptools/bamPEFragmentSizeDistribution.py' 2024-05-17T11:39:50,603 adding 'multiqc/modules/deeptools/bamPEFragmentSizeTable.py' 2024-05-17T11:39:50,604 adding 'multiqc/modules/deeptools/deeptools.py' 2024-05-17T11:39:50,606 adding 'multiqc/modules/deeptools/estimateReadFiltering.py' 2024-05-17T11:39:50,607 adding 'multiqc/modules/deeptools/plotCorrelation.py' 2024-05-17T11:39:50,609 adding 'multiqc/modules/deeptools/plotCoverage.py' 2024-05-17T11:39:50,611 adding 'multiqc/modules/deeptools/plotEnrichment.py' 2024-05-17T11:39:50,612 adding 'multiqc/modules/deeptools/plotFingerprint.py' 2024-05-17T11:39:50,614 adding 'multiqc/modules/deeptools/plotPCA.py' 2024-05-17T11:39:50,616 adding 'multiqc/modules/deeptools/plotProfile.py' 2024-05-17T11:39:50,617 adding 'multiqc/modules/diamond/__init__.py' 2024-05-17T11:39:50,619 adding 'multiqc/modules/diamond/diamond.py' 2024-05-17T11:39:50,620 adding 'multiqc/modules/disambiguate/__init__.py' 2024-05-17T11:39:50,622 adding 'multiqc/modules/disambiguate/disambiguate.py' 2024-05-17T11:39:50,623 adding 'multiqc/modules/dragen/__init__.py' 2024-05-17T11:39:50,625 adding 'multiqc/modules/dragen/coverage_hist.py' 2024-05-17T11:39:50,633 adding 'multiqc/modules/dragen/coverage_metrics.py' 2024-05-17T11:39:50,635 adding 'multiqc/modules/dragen/coverage_per_contig.py' 2024-05-17T11:39:50,637 adding 'multiqc/modules/dragen/dragen.py' 2024-05-17T11:39:50,639 adding 'multiqc/modules/dragen/dragen_gc_metrics.py' 2024-05-17T11:39:50,641 adding 'multiqc/modules/dragen/fragment_length.py' 2024-05-17T11:39:50,644 adding 'multiqc/modules/dragen/mapping_metrics.py' 2024-05-17T11:39:50,646 adding 'multiqc/modules/dragen/overall_mean_cov.py' 2024-05-17T11:39:50,648 adding 'multiqc/modules/dragen/ploidy_estimation_metrics.py' 2024-05-17T11:39:50,650 adding 'multiqc/modules/dragen/rna_quant_metrics.py' 2024-05-17T11:39:50,651 adding 'multiqc/modules/dragen/rna_transcript_cov.py' 2024-05-17T11:39:50,652 adding 'multiqc/modules/dragen/sc_atac_metrics.py' 2024-05-17T11:39:50,654 adding 'multiqc/modules/dragen/sc_rna_metrics.py' 2024-05-17T11:39:50,655 adding 'multiqc/modules/dragen/time_metrics.py' 2024-05-17T11:39:50,657 adding 'multiqc/modules/dragen/trimmer_metrics.py' 2024-05-17T11:39:50,659 adding 'multiqc/modules/dragen/utils.py' 2024-05-17T11:39:50,661 adding 'multiqc/modules/dragen/vc_metrics.py' 2024-05-17T11:39:50,663 adding 'multiqc/modules/dragen_fastqc/__init__.py' 2024-05-17T11:39:50,664 adding 'multiqc/modules/dragen_fastqc/base_metrics.py' 2024-05-17T11:39:50,666 adding 'multiqc/modules/dragen_fastqc/content_metrics.py' 2024-05-17T11:39:50,668 adding 'multiqc/modules/dragen_fastqc/dragen_fastqc.py' 2024-05-17T11:39:50,670 adding 'multiqc/modules/dragen_fastqc/gc_metrics.py' 2024-05-17T11:39:50,671 adding 'multiqc/modules/dragen_fastqc/read_metrics.py' 2024-05-17T11:39:50,673 adding 'multiqc/modules/dragen_fastqc/util.py' 2024-05-17T11:39:50,677 adding 'multiqc/modules/dragen_fastqc/assets/js/multiqc_dragen_fastqc.js' 2024-05-17T11:39:50,679 adding 'multiqc/modules/eigenstratdatabasetools/__init__.py' 2024-05-17T11:39:50,680 adding 'multiqc/modules/eigenstratdatabasetools/eigenstratdatabasetools.py' 2024-05-17T11:39:50,682 adding 'multiqc/modules/fastp/__init__.py' 2024-05-17T11:39:50,684 adding 'multiqc/modules/fastp/fastp.py' 2024-05-17T11:39:50,686 adding 'multiqc/modules/fastq_screen/__init__.py' 2024-05-17T11:39:50,688 adding 'multiqc/modules/fastq_screen/fastq_screen.py' 2024-05-17T11:39:50,690 adding 'multiqc/modules/fastqc/__init__.py' 2024-05-17T11:39:50,696 adding 'multiqc/modules/fastqc/fastqc.py' 2024-05-17T11:39:50,699 adding 'multiqc/modules/fastqc/assets/css/multiqc_fastqc.css' 2024-05-17T11:39:50,703 adding 'multiqc/modules/fastqc/assets/js/multiqc_fastqc.js' 2024-05-17T11:39:50,704 adding 'multiqc/modules/fastqc/fastqc_theoretical_gc/fastqc_theoretical_gc_hg38_genome.txt' 2024-05-17T11:39:50,706 adding 'multiqc/modules/fastqc/fastqc_theoretical_gc/fastqc_theoretical_gc_hg38_txome.txt' 2024-05-17T11:39:50,707 adding 'multiqc/modules/fastqc/fastqc_theoretical_gc/fastqc_theoretical_gc_mm10_genome.txt' 2024-05-17T11:39:50,709 adding 'multiqc/modules/fastqc/fastqc_theoretical_gc/fastqc_theoretical_gc_mm10_txome.txt' 2024-05-17T11:39:50,711 adding 'multiqc/modules/featureCounts/__init__.py' 2024-05-17T11:39:50,712 adding 'multiqc/modules/featureCounts/feature_counts.py' 2024-05-17T11:39:50,715 adding 'multiqc/modules/fgbio/ErrorRateByReadPosition.py' 2024-05-17T11:39:50,716 adding 'multiqc/modules/fgbio/__init__.py' 2024-05-17T11:39:50,718 adding 'multiqc/modules/fgbio/fgbio.py' 2024-05-17T11:39:50,719 adding 'multiqc/modules/fgbio/groupreadsbyumi.py' 2024-05-17T11:39:50,721 adding 'multiqc/modules/filtlong/__init__.py' 2024-05-17T11:39:50,722 adding 'multiqc/modules/filtlong/filtlong.py' 2024-05-17T11:39:50,724 adding 'multiqc/modules/flash/__init__.py' 2024-05-17T11:39:50,726 adding 'multiqc/modules/flash/flash.py' 2024-05-17T11:39:50,728 adding 'multiqc/modules/flexbar/__init__.py' 2024-05-17T11:39:50,729 adding 'multiqc/modules/flexbar/flexbar.py' 2024-05-17T11:39:50,731 adding 'multiqc/modules/freyja/__init__.py' 2024-05-17T11:39:50,732 adding 'multiqc/modules/freyja/freyja.py' 2024-05-17T11:39:50,734 adding 'multiqc/modules/gatk/__init__.py' 2024-05-17T11:39:50,736 adding 'multiqc/modules/gatk/analyze_saturation_mutagenesis.py' 2024-05-17T11:39:50,737 adding 'multiqc/modules/gatk/base_recalibrator.py' 2024-05-17T11:39:50,739 adding 'multiqc/modules/gatk/gatk.py' 2024-05-17T11:39:50,740 adding 'multiqc/modules/gatk/varianteval.py' 2024-05-17T11:39:50,742 adding 'multiqc/modules/gffcompare/__init__.py' 2024-05-17T11:39:50,744 adding 'multiqc/modules/gffcompare/gffcompare.py' 2024-05-17T11:39:50,745 adding 'multiqc/modules/goleft_indexcov/__init__.py' 2024-05-17T11:39:50,747 adding 'multiqc/modules/goleft_indexcov/goleft_indexcov.py' 2024-05-17T11:39:50,749 adding 'multiqc/modules/gopeaks/__init__.py' 2024-05-17T11:39:50,750 adding 'multiqc/modules/gopeaks/gopeaks.py' 2024-05-17T11:39:50,752 adding 'multiqc/modules/happy/__init__.py' 2024-05-17T11:39:50,753 adding 'multiqc/modules/happy/happy.py' 2024-05-17T11:39:50,755 adding 'multiqc/modules/hicexplorer/__init__.py' 2024-05-17T11:39:50,757 adding 'multiqc/modules/hicexplorer/hicexplorer.py' 2024-05-17T11:39:50,758 adding 'multiqc/modules/hicpro/__init__.py' 2024-05-17T11:39:50,761 adding 'multiqc/modules/hicpro/hicpro.py' 2024-05-17T11:39:50,763 adding 'multiqc/modules/hicup/__init__.py' 2024-05-17T11:39:50,765 adding 'multiqc/modules/hicup/hicup.py' 2024-05-17T11:39:50,766 adding 'multiqc/modules/hifiasm/__init__.py' 2024-05-17T11:39:50,768 adding 'multiqc/modules/hifiasm/hifiasm.py' 2024-05-17T11:39:50,769 adding 'multiqc/modules/hisat2/__init__.py' 2024-05-17T11:39:50,771 adding 'multiqc/modules/hisat2/hisat2.py' 2024-05-17T11:39:50,773 adding 'multiqc/modules/homer/__init__.py' 2024-05-17T11:39:50,774 adding 'multiqc/modules/homer/findpeaks.py' 2024-05-17T11:39:50,775 adding 'multiqc/modules/homer/homer.py' 2024-05-17T11:39:50,778 adding 'multiqc/modules/homer/tagdirectory.py' 2024-05-17T11:39:50,780 adding 'multiqc/modules/hops/__init__.py' 2024-05-17T11:39:50,781 adding 'multiqc/modules/hops/hops.py' 2024-05-17T11:39:50,783 adding 'multiqc/modules/hostile/__init__.py' 2024-05-17T11:39:50,784 adding 'multiqc/modules/hostile/hostile.py' 2024-05-17T11:39:50,786 adding 'multiqc/modules/htseq/__init__.py' 2024-05-17T11:39:50,787 adding 'multiqc/modules/htseq/htseq.py' 2024-05-17T11:39:50,789 adding 'multiqc/modules/humid/__init__.py' 2024-05-17T11:39:50,790 adding 'multiqc/modules/humid/clusters.py' 2024-05-17T11:39:50,792 adding 'multiqc/modules/humid/counts.py' 2024-05-17T11:39:50,793 adding 'multiqc/modules/humid/humid.py' 2024-05-17T11:39:50,794 adding 'multiqc/modules/humid/neighbours.py' 2024-05-17T11:39:50,796 adding 'multiqc/modules/humid/stats.py' 2024-05-17T11:39:50,798 adding 'multiqc/modules/interop/__init__.py' 2024-05-17T11:39:50,800 adding 'multiqc/modules/interop/interop.py' 2024-05-17T11:39:50,802 adding 'multiqc/modules/isoseq/__init__.py' 2024-05-17T11:39:50,804 adding 'multiqc/modules/isoseq/isoseq.py' 2024-05-17T11:39:50,806 adding 'multiqc/modules/ivar/__init__.py' 2024-05-17T11:39:50,808 adding 'multiqc/modules/ivar/ivar.py' 2024-05-17T11:39:50,810 adding 'multiqc/modules/jcvi/__init__.py' 2024-05-17T11:39:50,812 adding 'multiqc/modules/jcvi/jcvi.py' 2024-05-17T11:39:50,814 adding 'multiqc/modules/jellyfish/__init__.py' 2024-05-17T11:39:50,817 adding 'multiqc/modules/jellyfish/jellyfish.py' 2024-05-17T11:39:50,818 adding 'multiqc/modules/kaiju/__init__.py' 2024-05-17T11:39:50,821 adding 'multiqc/modules/kaiju/kaiju.py' 2024-05-17T11:39:50,823 adding 'multiqc/modules/kallisto/__init__.py' 2024-05-17T11:39:50,824 adding 'multiqc/modules/kallisto/kallisto.py' 2024-05-17T11:39:50,826 adding 'multiqc/modules/kat/__init__.py' 2024-05-17T11:39:50,828 adding 'multiqc/modules/kat/kat.py' 2024-05-17T11:39:50,830 adding 'multiqc/modules/kraken/__init__.py' 2024-05-17T11:39:50,833 adding 'multiqc/modules/kraken/kraken.py' 2024-05-17T11:39:50,835 adding 'multiqc/modules/leehom/__init__.py' 2024-05-17T11:39:50,837 adding 'multiqc/modules/leehom/leehom.py' 2024-05-17T11:39:50,839 adding 'multiqc/modules/librarian/__init__.py' 2024-05-17T11:39:50,841 adding 'multiqc/modules/librarian/librarian.py' 2024-05-17T11:39:50,842 adding 'multiqc/modules/lima/__init__.py' 2024-05-17T11:39:50,845 adding 'multiqc/modules/lima/lima.py' 2024-05-17T11:39:50,847 adding 'multiqc/modules/longranger/__init__.py' 2024-05-17T11:39:50,850 adding 'multiqc/modules/longranger/longranger.py' 2024-05-17T11:39:50,852 adding 'multiqc/modules/macs2/__init__.py' 2024-05-17T11:39:50,853 adding 'multiqc/modules/macs2/macs2.py' 2024-05-17T11:39:50,855 adding 'multiqc/modules/malt/__init__.py' 2024-05-17T11:39:50,857 adding 'multiqc/modules/malt/malt.py' 2024-05-17T11:39:50,859 adding 'multiqc/modules/mapdamage/__init__.py' 2024-05-17T11:39:50,861 adding 'multiqc/modules/mapdamage/mapdamage.py' 2024-05-17T11:39:50,863 adding 'multiqc/modules/megahit/__init__.py' 2024-05-17T11:39:50,865 adding 'multiqc/modules/megahit/megahit.py' 2024-05-17T11:39:50,867 adding 'multiqc/modules/metaphlan/__init__.py' 2024-05-17T11:39:50,869 adding 'multiqc/modules/metaphlan/metaphlan.py' 2024-05-17T11:39:50,871 adding 'multiqc/modules/methylqa/__init__.py' 2024-05-17T11:39:50,873 adding 'multiqc/modules/methylqa/methylqa.py' 2024-05-17T11:39:50,875 adding 'multiqc/modules/minionqc/__init__.py' 2024-05-17T11:39:50,877 adding 'multiqc/modules/minionqc/minionqc.py' 2024-05-17T11:39:50,879 adding 'multiqc/modules/mirtop/__init__.py' 2024-05-17T11:39:50,881 adding 'multiqc/modules/mirtop/mirtop.py' 2024-05-17T11:39:50,883 adding 'multiqc/modules/mirtrace/__init__.py' 2024-05-17T11:39:50,885 adding 'multiqc/modules/mirtrace/mirtrace.py' 2024-05-17T11:39:50,887 adding 'multiqc/modules/mosdepth/__init__.py' 2024-05-17T11:39:50,890 adding 'multiqc/modules/mosdepth/mosdepth.py' 2024-05-17T11:39:50,892 adding 'multiqc/modules/motus/__init__.py' 2024-05-17T11:39:50,894 adding 'multiqc/modules/motus/motus.py' 2024-05-17T11:39:50,896 adding 'multiqc/modules/mtnucratio/__init__.py' 2024-05-17T11:39:50,897 adding 'multiqc/modules/mtnucratio/mtnucratio.py' 2024-05-17T11:39:50,899 adding 'multiqc/modules/multivcfanalyzer/__init__.py' 2024-05-17T11:39:50,901 adding 'multiqc/modules/multivcfanalyzer/multivcfanalyzer.py' 2024-05-17T11:39:50,903 adding 'multiqc/modules/nanostat/__init__.py' 2024-05-17T11:39:50,905 adding 'multiqc/modules/nanostat/nanostat.py' 2024-05-17T11:39:50,907 adding 'multiqc/modules/nextclade/__init__.py' 2024-05-17T11:39:50,908 adding 'multiqc/modules/nextclade/nextclade.py' 2024-05-17T11:39:50,911 adding 'multiqc/modules/ngsderive/__init__.py' 2024-05-17T11:39:50,913 adding 'multiqc/modules/ngsderive/ngsderive.py' 2024-05-17T11:39:50,915 adding 'multiqc/modules/nonpareil/__init__.py' 2024-05-17T11:39:50,917 adding 'multiqc/modules/nonpareil/nonpareil.py' 2024-05-17T11:39:50,919 adding 'multiqc/modules/odgi/__init__.py' 2024-05-17T11:39:50,921 adding 'multiqc/modules/odgi/odgi.py' 2024-05-17T11:39:50,923 adding 'multiqc/modules/optitype/__init__.py' 2024-05-17T11:39:50,925 adding 'multiqc/modules/optitype/optitype.py' 2024-05-17T11:39:50,927 adding 'multiqc/modules/pangolin/__init__.py' 2024-05-17T11:39:50,930 adding 'multiqc/modules/pangolin/pangolin.py' 2024-05-17T11:39:50,933 adding 'multiqc/modules/pbmarkdup/__init__.py' 2024-05-17T11:39:50,935 adding 'multiqc/modules/pbmarkdup/pbmarkdup.py' 2024-05-17T11:39:50,939 adding 'multiqc/modules/peddy/__init__.py' 2024-05-17T11:39:50,942 adding 'multiqc/modules/peddy/peddy.py' 2024-05-17T11:39:50,944 adding 'multiqc/modules/phantompeakqualtools/__init__.py' 2024-05-17T11:39:50,945 adding 'multiqc/modules/phantompeakqualtools/phantompeakqualtools.py' 2024-05-17T11:39:50,948 adding 'multiqc/modules/picard/AlignmentSummaryMetrics.py' 2024-05-17T11:39:50,949 adding 'multiqc/modules/picard/BaseDistributionByCycleMetrics.py' 2024-05-17T11:39:50,952 adding 'multiqc/modules/picard/CrosscheckFingerprints.py' 2024-05-17T11:39:50,953 adding 'multiqc/modules/picard/ExtractIlluminaBarcodes.py' 2024-05-17T11:39:50,955 adding 'multiqc/modules/picard/GcBiasMetrics.py' 2024-05-17T11:39:50,957 adding 'multiqc/modules/picard/HsMetrics.py' 2024-05-17T11:39:50,959 adding 'multiqc/modules/picard/IlluminaBasecallingMetrics.py' 2024-05-17T11:39:50,961 adding 'multiqc/modules/picard/IlluminaLaneMetrics.py' 2024-05-17T11:39:50,962 adding 'multiqc/modules/picard/InsertSizeMetrics.py' 2024-05-17T11:39:50,965 adding 'multiqc/modules/picard/MarkDuplicates.py' 2024-05-17T11:39:50,966 adding 'multiqc/modules/picard/MarkIlluminaAdapters.py' 2024-05-17T11:39:50,968 adding 'multiqc/modules/picard/OxoGMetrics.py' 2024-05-17T11:39:50,969 adding 'multiqc/modules/picard/QualityByCycleMetrics.py' 2024-05-17T11:39:50,970 adding 'multiqc/modules/picard/QualityScoreDistributionMetrics.py' 2024-05-17T11:39:50,972 adding 'multiqc/modules/picard/QualityYieldMetrics.py' 2024-05-17T11:39:50,974 adding 'multiqc/modules/picard/RnaSeqMetrics.py' 2024-05-17T11:39:50,975 adding 'multiqc/modules/picard/RrbsSummaryMetrics.py' 2024-05-17T11:39:50,977 adding 'multiqc/modules/picard/TargetedPcrMetrics.py' 2024-05-17T11:39:50,979 adding 'multiqc/modules/picard/ValidateSamFile.py' 2024-05-17T11:39:50,981 adding 'multiqc/modules/picard/VariantCallingMetrics.py' 2024-05-17T11:39:50,983 adding 'multiqc/modules/picard/WgsMetrics.py' 2024-05-17T11:39:50,984 adding 'multiqc/modules/picard/__init__.py' 2024-05-17T11:39:50,986 adding 'multiqc/modules/picard/picard.py' 2024-05-17T11:39:50,987 adding 'multiqc/modules/picard/util.py' 2024-05-17T11:39:50,989 adding 'multiqc/modules/porechop/__init__.py' 2024-05-17T11:39:50,991 adding 'multiqc/modules/porechop/porechop.py' 2024-05-17T11:39:50,992 adding 'multiqc/modules/preseq/__init__.py' 2024-05-17T11:39:50,995 adding 'multiqc/modules/preseq/preseq.py' 2024-05-17T11:39:50,996 adding 'multiqc/modules/prinseqplusplus/__init__.py' 2024-05-17T11:39:50,998 adding 'multiqc/modules/prinseqplusplus/prinseqplusplus.py' 2024-05-17T11:39:51,000 adding 'multiqc/modules/prokka/__init__.py' 2024-05-17T11:39:51,001 adding 'multiqc/modules/prokka/prokka.py' 2024-05-17T11:39:51,003 adding 'multiqc/modules/purple/__init__.py' 2024-05-17T11:39:51,005 adding 'multiqc/modules/purple/purple.py' 2024-05-17T11:39:51,007 adding 'multiqc/modules/pychopper/__init__.py' 2024-05-17T11:39:51,008 adding 'multiqc/modules/pychopper/pychopper.py' 2024-05-17T11:39:51,010 adding 'multiqc/modules/pycoqc/__init__.py' 2024-05-17T11:39:51,012 adding 'multiqc/modules/pycoqc/pycoqc.py' 2024-05-17T11:39:51,014 adding 'multiqc/modules/qc3C/__init__.py' 2024-05-17T11:39:51,019 adding 'multiqc/modules/qc3C/qc3C.py' 2024-05-17T11:39:51,020 adding 'multiqc/modules/qorts/__init__.py' 2024-05-17T11:39:51,023 adding 'multiqc/modules/qorts/qorts.py' 2024-05-17T11:39:51,027 adding 'multiqc/modules/qualimap/QM_BamQC.py' 2024-05-17T11:39:51,029 adding 'multiqc/modules/qualimap/QM_RNASeq.py' 2024-05-17T11:39:51,031 adding 'multiqc/modules/qualimap/__init__.py' 2024-05-17T11:39:51,032 adding 'multiqc/modules/qualimap/qualimap.py' 2024-05-17T11:39:51,034 adding 'multiqc/modules/quast/__init__.py' 2024-05-17T11:39:51,036 adding 'multiqc/modules/quast/quast.py' 2024-05-17T11:39:51,037 adding 'multiqc/modules/rna_seqc/__init__.py' 2024-05-17T11:39:51,039 adding 'multiqc/modules/rna_seqc/rna_seqc.py' 2024-05-17T11:39:51,041 adding 'multiqc/modules/rockhopper/__init__.py' 2024-05-17T11:39:51,043 adding 'multiqc/modules/rockhopper/rockhopper.py' 2024-05-17T11:39:51,045 adding 'multiqc/modules/rsem/__init__.py' 2024-05-17T11:39:51,046 adding 'multiqc/modules/rsem/rsem.py' 2024-05-17T11:39:51,048 adding 'multiqc/modules/rseqc/__init__.py' 2024-05-17T11:39:51,050 adding 'multiqc/modules/rseqc/bam_stat.py' 2024-05-17T11:39:51,051 adding 'multiqc/modules/rseqc/gene_body_coverage.py' 2024-05-17T11:39:51,053 adding 'multiqc/modules/rseqc/infer_experiment.py' 2024-05-17T11:39:51,054 adding 'multiqc/modules/rseqc/inner_distance.py' 2024-05-17T11:39:51,056 adding 'multiqc/modules/rseqc/junction_annotation.py' 2024-05-17T11:39:51,057 adding 'multiqc/modules/rseqc/junction_saturation.py' 2024-05-17T11:39:51,059 adding 'multiqc/modules/rseqc/read_distribution.py' 2024-05-17T11:39:51,060 adding 'multiqc/modules/rseqc/read_duplication.py' 2024-05-17T11:39:51,062 adding 'multiqc/modules/rseqc/read_gc.py' 2024-05-17T11:39:51,063 adding 'multiqc/modules/rseqc/rseqc.py' 2024-05-17T11:39:51,064 adding 'multiqc/modules/rseqc/tin.py' 2024-05-17T11:39:51,067 adding 'multiqc/modules/rseqc/assets/js/multiqc_rseqc.js' 2024-05-17T11:39:51,069 adding 'multiqc/modules/salmon/__init__.py' 2024-05-17T11:39:51,071 adding 'multiqc/modules/salmon/salmon.py' 2024-05-17T11:39:51,073 adding 'multiqc/modules/sambamba/__init__.py' 2024-05-17T11:39:51,074 adding 'multiqc/modules/sambamba/markdup.py' 2024-05-17T11:39:51,076 adding 'multiqc/modules/sambamba/sambamba.py' 2024-05-17T11:39:51,077 adding 'multiqc/modules/samblaster/__init__.py' 2024-05-17T11:39:51,079 adding 'multiqc/modules/samblaster/samblaster.py' 2024-05-17T11:39:51,081 adding 'multiqc/modules/samtools/__init__.py' 2024-05-17T11:39:51,082 adding 'multiqc/modules/samtools/coverage.py' 2024-05-17T11:39:51,084 adding 'multiqc/modules/samtools/flagstat.py' 2024-05-17T11:39:51,086 adding 'multiqc/modules/samtools/idxstats.py' 2024-05-17T11:39:51,087 adding 'multiqc/modules/samtools/markdup.py' 2024-05-17T11:39:51,089 adding 'multiqc/modules/samtools/rmdup.py' 2024-05-17T11:39:51,090 adding 'multiqc/modules/samtools/samtools.py' 2024-05-17T11:39:51,092 adding 'multiqc/modules/samtools/stats.py' 2024-05-17T11:39:51,094 adding 'multiqc/modules/sargasso/__init__.py' 2024-05-17T11:39:51,096 adding 'multiqc/modules/sargasso/sargasso.py' 2024-05-17T11:39:51,098 adding 'multiqc/modules/seqera_cli/__init__.py' 2024-05-17T11:39:51,100 adding 'multiqc/modules/seqera_cli/seqera_cli.py' 2024-05-17T11:39:51,101 adding 'multiqc/modules/sequali/__init__.py' 2024-05-17T11:39:51,105 adding 'multiqc/modules/sequali/sequali.py' 2024-05-17T11:39:51,107 adding 'multiqc/modules/seqwho/__init__.py' 2024-05-17T11:39:51,109 adding 'multiqc/modules/seqwho/seqwho.py' 2024-05-17T11:39:51,111 adding 'multiqc/modules/seqyclean/__init__.py' 2024-05-17T11:39:51,113 adding 'multiqc/modules/seqyclean/seqyclean.py' 2024-05-17T11:39:51,115 adding 'multiqc/modules/sexdeterrmine/__init__.py' 2024-05-17T11:39:51,117 adding 'multiqc/modules/sexdeterrmine/sexdeterrmine.py' 2024-05-17T11:39:51,118 adding 'multiqc/modules/sickle/__init__.py' 2024-05-17T11:39:51,120 adding 'multiqc/modules/sickle/sickle.py' 2024-05-17T11:39:51,122 adding 'multiqc/modules/skewer/__init__.py' 2024-05-17T11:39:51,124 adding 'multiqc/modules/skewer/skewer.py' 2024-05-17T11:39:51,126 adding 'multiqc/modules/slamdunk/__init__.py' 2024-05-17T11:39:51,128 adding 'multiqc/modules/slamdunk/slamdunk.py' 2024-05-17T11:39:51,130 adding 'multiqc/modules/snippy/__init__.py' 2024-05-17T11:39:51,132 adding 'multiqc/modules/snippy/snippy.py' 2024-05-17T11:39:51,133 adding 'multiqc/modules/snpeff/__init__.py' 2024-05-17T11:39:51,135 adding 'multiqc/modules/snpeff/snpeff.py' 2024-05-17T11:39:51,137 adding 'multiqc/modules/snpsplit/__init__.py' 2024-05-17T11:39:51,139 adding 'multiqc/modules/snpsplit/snpsplit.py' 2024-05-17T11:39:51,141 adding 'multiqc/modules/somalier/__init__.py' 2024-05-17T11:39:51,144 adding 'multiqc/modules/somalier/somalier.py' 2024-05-17T11:39:51,146 adding 'multiqc/modules/sortmerna/__init__.py' 2024-05-17T11:39:51,147 adding 'multiqc/modules/sortmerna/sortmerna.py' 2024-05-17T11:39:51,149 adding 'multiqc/modules/sourmash/__init__.py' 2024-05-17T11:39:51,150 adding 'multiqc/modules/sourmash/compare.py' 2024-05-17T11:39:51,152 adding 'multiqc/modules/sourmash/gather.py' 2024-05-17T11:39:51,153 adding 'multiqc/modules/sourmash/sourmash.py' 2024-05-17T11:39:51,155 adding 'multiqc/modules/spaceranger/__init__.py' 2024-05-17T11:39:51,157 adding 'multiqc/modules/spaceranger/_utils.py' 2024-05-17T11:39:51,159 adding 'multiqc/modules/spaceranger/count.py' 2024-05-17T11:39:51,160 adding 'multiqc/modules/spaceranger/spaceranger.py' 2024-05-17T11:39:51,162 adding 'multiqc/modules/stacks/__init__.py' 2024-05-17T11:39:51,164 adding 'multiqc/modules/stacks/stacks.py' 2024-05-17T11:39:51,166 adding 'multiqc/modules/star/__init__.py' 2024-05-17T11:39:51,168 adding 'multiqc/modules/star/star.py' 2024-05-17T11:39:51,170 adding 'multiqc/modules/supernova/__init__.py' 2024-05-17T11:39:51,172 adding 'multiqc/modules/supernova/supernova.py' 2024-05-17T11:39:51,174 adding 'multiqc/modules/theta2/__init__.py' 2024-05-17T11:39:51,176 adding 'multiqc/modules/theta2/theta2.py' 2024-05-17T11:39:51,178 adding 'multiqc/modules/tophat/__init__.py' 2024-05-17T11:39:51,179 adding 'multiqc/modules/tophat/tophat.py' 2024-05-17T11:39:51,181 adding 'multiqc/modules/trimmomatic/__init__.py' 2024-05-17T11:39:51,182 adding 'multiqc/modules/trimmomatic/trimmomatic.py' 2024-05-17T11:39:51,184 adding 'multiqc/modules/truvari/__init__.py' 2024-05-17T11:39:51,186 adding 'multiqc/modules/truvari/bench.py' 2024-05-17T11:39:51,187 adding 'multiqc/modules/truvari/truvari.py' 2024-05-17T11:39:51,189 adding 'multiqc/modules/umitools/__init__.py' 2024-05-17T11:39:51,191 adding 'multiqc/modules/umitools/umitools.py' 2024-05-17T11:39:51,193 adding 'multiqc/modules/varscan2/__init__.py' 2024-05-17T11:39:51,195 adding 'multiqc/modules/varscan2/varscan2.py' 2024-05-17T11:39:51,197 adding 'multiqc/modules/vcftools/__init__.py' 2024-05-17T11:39:51,198 adding 'multiqc/modules/vcftools/relatedness2.py' 2024-05-17T11:39:51,200 adding 'multiqc/modules/vcftools/tstv_by_count.py' 2024-05-17T11:39:51,201 adding 'multiqc/modules/vcftools/tstv_by_qual.py' 2024-05-17T11:39:51,202 adding 'multiqc/modules/vcftools/tstv_summary.py' 2024-05-17T11:39:51,204 adding 'multiqc/modules/vcftools/vcftools.py' 2024-05-17T11:39:51,205 adding 'multiqc/modules/vep/__init__.py' 2024-05-17T11:39:51,208 adding 'multiqc/modules/vep/vep.py' 2024-05-17T11:39:51,210 adding 'multiqc/modules/verifybamid/__init__.py' 2024-05-17T11:39:51,212 adding 'multiqc/modules/verifybamid/verifybamid.py' 2024-05-17T11:39:51,214 adding 'multiqc/modules/whatshap/__init__.py' 2024-05-17T11:39:51,216 adding 'multiqc/modules/whatshap/whatshap.py' 2024-05-17T11:39:51,218 adding 'multiqc/modules/xengsort/__init__.py' 2024-05-17T11:39:51,220 adding 'multiqc/modules/xengsort/xengsort.py' 2024-05-17T11:39:51,222 adding 'multiqc/modules/xenome/__init__.py' 2024-05-17T11:39:51,224 adding 'multiqc/modules/xenome/xenome.py' 2024-05-17T11:39:51,226 adding 'multiqc/plots/__init__.py' 2024-05-17T11:39:51,228 adding 'multiqc/plots/bargraph.py' 2024-05-17T11:39:51,229 adding 'multiqc/plots/box.py' 2024-05-17T11:39:51,231 adding 'multiqc/plots/heatmap.py' 2024-05-17T11:39:51,233 adding 'multiqc/plots/linegraph.py' 2024-05-17T11:39:51,234 adding 'multiqc/plots/scatter.py' 2024-05-17T11:39:51,236 adding 'multiqc/plots/table.py' 2024-05-17T11:39:51,239 adding 'multiqc/plots/table_object.py' 2024-05-17T11:39:51,240 adding 'multiqc/plots/violin.py' 2024-05-17T11:39:51,242 adding 'multiqc/plots/plotly/__init__.py' 2024-05-17T11:39:51,244 adding 'multiqc/plots/plotly/bar.py' 2024-05-17T11:39:51,246 adding 'multiqc/plots/plotly/box.py' 2024-05-17T11:39:51,248 adding 'multiqc/plots/plotly/heatmap.py' 2024-05-17T11:39:51,251 adding 'multiqc/plots/plotly/line.py' 2024-05-17T11:39:51,255 adding 'multiqc/plots/plotly/plot.py' 2024-05-17T11:39:51,257 adding 'multiqc/plots/plotly/scatter.py' 2024-05-17T11:39:51,260 adding 'multiqc/plots/plotly/table.py' 2024-05-17T11:39:51,264 adding 'multiqc/plots/plotly/violin.py' 2024-05-17T11:39:51,266 adding 'multiqc/templates/__init__.py' 2024-05-17T11:39:51,268 adding 'multiqc/templates/default/__init__.py' 2024-05-17T11:39:51,269 adding 'multiqc/templates/default/base.html' 2024-05-17T11:39:51,271 adding 'multiqc/templates/default/content.html' 2024-05-17T11:39:51,272 adding 'multiqc/templates/default/foot.html' 2024-05-17T11:39:51,273 adding 'multiqc/templates/default/footer.html' 2024-05-17T11:39:51,275 adding 'multiqc/templates/default/general_stats.html' 2024-05-17T11:39:51,276 adding 'multiqc/templates/default/head.html' 2024-05-17T11:39:51,277 adding 'multiqc/templates/default/header.html' 2024-05-17T11:39:51,279 adding 'multiqc/templates/default/includes.html' 2024-05-17T11:39:51,280 adding 'multiqc/templates/default/nav.html' 2024-05-17T11:39:51,282 adding 'multiqc/templates/default/toolbox.html' 2024-05-17T11:39:51,294 adding 'multiqc/templates/default/assets/css/bootstrap.min.css' 2024-05-17T11:39:51,298 adding 'multiqc/templates/default/assets/css/default_multiqc.css' 2024-05-17T11:39:51,300 adding 'multiqc/templates/default/assets/css/jquery.toast.css' 2024-05-17T11:39:51,304 adding 'multiqc/templates/default/assets/fonts/glyphicons-halflings-regular.eot' 2024-05-17T11:39:51,325 adding 'multiqc/templates/default/assets/fonts/glyphicons-halflings-regular.svg' 2024-05-17T11:39:51,333 adding 'multiqc/templates/default/assets/fonts/glyphicons-halflings-regular.ttf' 2024-05-17T11:39:51,337 adding 'multiqc/templates/default/assets/fonts/glyphicons-halflings-regular.woff' 2024-05-17T11:39:51,340 adding 'multiqc/templates/default/assets/fonts/glyphicons-halflings-regular.woff2' 2024-05-17T11:39:51,342 adding 'multiqc/templates/default/assets/img/MultiQC_logo.png' 2024-05-17T11:39:51,344 adding 'multiqc/templates/default/assets/img/MultiQC_logo_dark.svg' 2024-05-17T11:39:51,346 adding 'multiqc/templates/default/assets/img/favicon-16x16.png' 2024-05-17T11:39:51,348 adding 'multiqc/templates/default/assets/img/favicon-32x32.png' 2024-05-17T11:39:51,350 adding 'multiqc/templates/default/assets/img/favicon-96x96.png' 2024-05-17T11:39:51,352 adding 'multiqc/templates/default/assets/img/seqera_logo.png' 2024-05-17T11:39:51,354 adding 'multiqc/templates/default/assets/img/seqera_logo_mono.png' 2024-05-17T11:39:51,356 adding 'multiqc/templates/default/assets/js/decompress.js' 2024-05-17T11:39:51,358 adding 'multiqc/templates/default/assets/js/flat.js' 2024-05-17T11:39:51,360 adding 'multiqc/templates/default/assets/js/multiqc.js' 2024-05-17T11:39:51,363 adding 'multiqc/templates/default/assets/js/plotting.js' 2024-05-17T11:39:51,364 adding 'multiqc/templates/default/assets/js/render.js' 2024-05-17T11:39:51,367 adding 'multiqc/templates/default/assets/js/tables.js' 2024-05-17T11:39:51,372 adding 'multiqc/templates/default/assets/js/toolbox.js' 2024-05-17T11:39:51,375 adding 'multiqc/templates/default/assets/js/packages/FileSaver.min.js' 2024-05-17T11:39:51,379 adding 'multiqc/templates/default/assets/js/packages/bootstrap.min.js' 2024-05-17T11:39:51,392 adding 'multiqc/templates/default/assets/js/packages/jquery-3.1.1.min.js' 2024-05-17T11:39:51,397 adding 'multiqc/templates/default/assets/js/packages/jquery-ui.min.js' 2024-05-17T11:39:51,404 adding 'multiqc/templates/default/assets/js/packages/jquery.tablesorter.min.js' 2024-05-17T11:39:51,406 adding 'multiqc/templates/default/assets/js/packages/jquery.toast.min.js' 2024-05-17T11:39:51,419 adding 'multiqc/templates/default/assets/js/packages/jszip.min.js' 2024-05-17T11:39:51,423 adding 'multiqc/templates/default/assets/js/packages/pako_inflate.min.js' 2024-05-17T11:39:52,445 adding 'multiqc/templates/default/assets/js/packages/plotly-2.27.0.js' 2024-05-17T11:39:52,941 adding 'multiqc/templates/default/assets/js/packages/plotly-2.27.0.min.js' 2024-05-17T11:39:52,966 adding 'multiqc/templates/default/assets/js/plots/bar.js' 2024-05-17T11:39:52,967 adding 'multiqc/templates/default/assets/js/plots/box.js' 2024-05-17T11:39:52,969 adding 'multiqc/templates/default/assets/js/plots/heatmap.js' 2024-05-17T11:39:52,971 adding 'multiqc/templates/default/assets/js/plots/line.js' 2024-05-17T11:39:52,973 adding 'multiqc/templates/default/assets/js/plots/scatter.js' 2024-05-17T11:39:52,975 adding 'multiqc/templates/default/assets/js/plots/violin.js' 2024-05-17T11:39:52,977 adding 'multiqc/templates/gathered/__init__.py' 2024-05-17T11:39:52,979 adding 'multiqc/templates/gathered/content.html' 2024-05-17T11:39:52,980 adding 'multiqc/templates/gathered/nav.html' 2024-05-17T11:39:52,982 adding 'multiqc/templates/geo/__init__.py' 2024-05-17T11:39:52,983 adding 'multiqc/templates/geo/includes.html' 2024-05-17T11:39:52,994 adding 'multiqc/templates/geo/assets/css/bootstrap.min.css' 2024-05-17T11:39:52,997 adding 'multiqc/templates/geo/assets/img/emailme.gif' 2024-05-17T11:39:53,003 adding 'multiqc/templates/geo/assets/img/flames.gif' 2024-05-17T11:39:53,005 adding 'multiqc/templates/geo/assets/img/glyphicons-halflings-white.png' 2024-05-17T11:39:53,008 adding 'multiqc/templates/geo/assets/img/glyphicons-halflings.png' 2024-05-17T11:39:53,011 adding 'multiqc/templates/geo/assets/img/hot.gif' 2024-05-17T11:39:53,020 adding 'multiqc/templates/geo/assets/img/mchammer.gif' 2024-05-17T11:39:53,024 adding 'multiqc/templates/geo/assets/img/microfab.gif' 2024-05-17T11:39:53,026 adding 'multiqc/templates/geo/assets/img/new.gif' 2024-05-17T11:39:53,028 adding 'multiqc/templates/geo/assets/img/new2.gif' 2024-05-17T11:39:53,030 adding 'multiqc/templates/geo/assets/img/progress.gif' 2024-05-17T11:39:53,031 adding 'multiqc/templates/geo/assets/img/rainbow.gif' 2024-05-17T11:39:53,034 adding 'multiqc/templates/geo/assets/img/stars.gif' 2024-05-17T11:39:53,036 adding 'multiqc/templates/sections/__init__.py' 2024-05-17T11:39:53,038 adding 'multiqc/templates/sections/content.html' 2024-05-17T11:39:53,040 adding 'multiqc/templates/simple/__init__.py' 2024-05-17T11:39:53,041 adding 'multiqc/templates/simple/foot.html' 2024-05-17T11:39:53,042 adding 'multiqc/templates/simple/header.html' 2024-05-17T11:39:53,044 adding 'multiqc/templates/simple/includes.html' 2024-05-17T11:39:53,045 adding 'multiqc/templates/simple/nav.html' 2024-05-17T11:39:53,047 adding 'multiqc/templates/simple/toolbox.html' 2024-05-17T11:39:53,050 adding 'multiqc/utils/__init__.py' 2024-05-17T11:39:53,051 adding 'multiqc/utils/config.py' 2024-05-17T11:39:53,053 adding 'multiqc/utils/megaqc.py' 2024-05-17T11:39:53,056 adding 'multiqc/utils/mqc_colour.py' 2024-05-17T11:39:53,057 adding 'multiqc/utils/report.py' 2024-05-17T11:39:53,059 adding 'multiqc/utils/util_functions.py' 2024-05-17T11:39:53,066 adding 'multiqc-1.22.1.dist-info/LICENSE' 2024-05-17T11:39:53,074 adding 'multiqc-1.22.1.dist-info/METADATA' 2024-05-17T11:39:53,075 adding 'multiqc-1.22.1.dist-info/WHEEL' 2024-05-17T11:39:53,077 adding 'multiqc-1.22.1.dist-info/entry_points.txt' 2024-05-17T11:39:53,078 adding 'multiqc-1.22.1.dist-info/top_level.txt' 2024-05-17T11:39:53,087 adding 'multiqc-1.22.1.dist-info/RECORD' 2024-05-17T11:39:53,200 removing build/bdist.linux-armv7l/wheel 2024-05-17T11:39:53,516 Building wheel for multiqc (pyproject.toml): finished with status 'done' 2024-05-17T11:39:53,603 Created wheel for multiqc: filename=multiqc-1.22.1-py3-none-any.whl size=4477379 sha256=6c30c3537fb106035f5ef11d18305211ea1aa76c8b5ec9ecf28abe5423433408 2024-05-17T11:39:53,604 Stored in directory: /tmp/pip-ephem-wheel-cache-z6otba4g/wheels/7f/40/7c/8590d9c1a4d6691ea187f153a9245e81448376e7613700d002 2024-05-17T11:39:53,654 Successfully built multiqc 2024-05-17T11:39:53,817 Removed build tracker: '/tmp/pip-build-tracker-shvp0_w6'