2024-05-22T04:24:11,372 Created temporary directory: /tmp/pip-build-tracker-kcu6i32q 2024-05-22T04:24:11,373 Initialized build tracking at /tmp/pip-build-tracker-kcu6i32q 2024-05-22T04:24:11,373 Created build tracker: /tmp/pip-build-tracker-kcu6i32q 2024-05-22T04:24:11,374 Entered build tracker: /tmp/pip-build-tracker-kcu6i32q 2024-05-22T04:24:11,375 Created temporary directory: /tmp/pip-wheel-x7qv2ypo 2024-05-22T04:24:11,377 Created temporary directory: /tmp/pip-ephem-wheel-cache-79eox_3j 2024-05-22T04:24:11,400 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2024-05-22T04:24:11,403 2 location(s) to search for versions of funvip: 2024-05-22T04:24:11,403 * https://pypi.org/simple/funvip/ 2024-05-22T04:24:11,403 * https://www.piwheels.org/simple/funvip/ 2024-05-22T04:24:11,404 Fetching project page and analyzing links: https://pypi.org/simple/funvip/ 2024-05-22T04:24:11,405 Getting page https://pypi.org/simple/funvip/ 2024-05-22T04:24:11,406 Found index url https://pypi.org/simple/ 2024-05-22T04:24:11,622 Fetched page https://pypi.org/simple/funvip/ as application/vnd.pypi.simple.v1+json 2024-05-22T04:24:11,624 Skipping link: No binaries permitted for funvip: https://files.pythonhosted.org/packages/a0/b5/0d65eb17b155c93a7022978aa4521fa29d234a099409863a5b08a8e7e122/FunVIP-0.3.20-py3-none-any.whl (from https://pypi.org/simple/funvip/) (requires-python:<3.13,>3.8) 2024-05-22T04:24:11,625 Found link https://files.pythonhosted.org/packages/9b/df/34c36f5642250c040b8ef6fd2f6c11699fe52dca76ef2697e566a4101185/funvip-0.3.20.tar.gz (from https://pypi.org/simple/funvip/) (requires-python:<3.13,>3.8), version: 0.3.20 2024-05-22T04:24:11,625 Skipping link: No binaries permitted for funvip: https://files.pythonhosted.org/packages/fe/66/8319c3a6cd421da1f2a7febf8bc5042089d0f7480d31d988b9dc02b348cc/FunVIP-0.3.21-py3-none-any.whl (from https://pypi.org/simple/funvip/) (requires-python:<3.13,>3.8) 2024-05-22T04:24:11,626 Found link https://files.pythonhosted.org/packages/15/a7/1458c95468d22392f0d1f5366422c5e3325b2b73fb00ead5645ce60aefd3/funvip-0.3.21.tar.gz (from https://pypi.org/simple/funvip/) (requires-python:<3.13,>3.8), version: 0.3.21 2024-05-22T04:24:11,627 Skipping link: No binaries permitted for funvip: https://files.pythonhosted.org/packages/09/25/d7edd31afd3b5a9c32fd19315aa55fe62eeedbb6ad8efd581f1197da518e/FunVIP-0.3.22-py3-none-any.whl (from https://pypi.org/simple/funvip/) (requires-python:<3.13,>3.8) 2024-05-22T04:24:11,628 Found link https://files.pythonhosted.org/packages/77/eb/6c02451b239042d60f03c7ed10e91d4c53c4e227d2eb1d49aa8b2246a973/funvip-0.3.22.tar.gz (from https://pypi.org/simple/funvip/) (requires-python:<3.13,>3.8), version: 0.3.22 2024-05-22T04:24:11,629 Fetching project page and analyzing links: https://www.piwheels.org/simple/funvip/ 2024-05-22T04:24:11,630 Getting page https://www.piwheels.org/simple/funvip/ 2024-05-22T04:24:11,631 Found index url https://www.piwheels.org/simple/ 2024-05-22T04:24:11,822 Fetched page https://www.piwheels.org/simple/funvip/ as text/html 2024-05-22T04:24:11,824 Skipping link: No binaries permitted for funvip: https://www.piwheels.org/simple/funvip/FunVIP-0.3.21-py3-none-any.whl#sha256=e1863d6683eb41c991cce86262ef477d12ad652320dfb6fa0f5b9d184d7c42c6 (from https://www.piwheels.org/simple/funvip/) (requires-python:<3.13,>3.8) 2024-05-22T04:24:11,825 Skipping link: No binaries permitted for funvip: https://www.piwheels.org/simple/funvip/FunVIP-0.3.20-py3-none-any.whl#sha256=c93795ba7644b586c23cea4f5a6c421915b36ff5f5be700ee1a37d7857f03e3b (from https://www.piwheels.org/simple/funvip/) (requires-python:<3.13,>3.8) 2024-05-22T04:24:11,825 Skipping link: not a file: https://www.piwheels.org/simple/funvip/ 2024-05-22T04:24:11,826 Skipping link: not a file: https://pypi.org/simple/funvip/ 2024-05-22T04:24:11,846 Given no hashes to check 1 links for project 'funvip': discarding no candidates 2024-05-22T04:24:11,865 Collecting funvip==0.3.22 2024-05-22T04:24:11,868 Created temporary directory: /tmp/pip-unpack-9nv08s6p 2024-05-22T04:24:12,086 Downloading funvip-0.3.22.tar.gz (59.5 MB) 2024-05-22T04:24:26,909 Added funvip==0.3.22 from https://files.pythonhosted.org/packages/77/eb/6c02451b239042d60f03c7ed10e91d4c53c4e227d2eb1d49aa8b2246a973/funvip-0.3.22.tar.gz to build tracker '/tmp/pip-build-tracker-kcu6i32q' 2024-05-22T04:24:26,915 Created temporary directory: /tmp/pip-build-env-g7w591x0 2024-05-22T04:24:26,920 Installing build dependencies: started 2024-05-22T04:24:26,922 Running command pip subprocess to install build dependencies 2024-05-22T04:24:28,091 Using pip 24.0 from /home/piwheels/.local/lib/python3.11/site-packages/pip (python 3.11) 2024-05-22T04:24:28,599 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2024-05-22T04:24:30,608 Collecting setuptools 2024-05-22T04:24:30,647 Using cached https://www.piwheels.org/simple/setuptools/setuptools-70.0.0-py3-none-any.whl (863 kB) 2024-05-22T04:24:30,839 Collecting setuptools-ext 2024-05-22T04:24:30,851 Downloading https://www.piwheels.org/simple/setuptools-ext/setuptools_ext-0.9-py3-none-any.whl (7.2 kB) 2024-05-22T04:24:31,062 Collecting wheel 2024-05-22T04:24:31,079 Using cached https://www.piwheels.org/simple/wheel/wheel-0.43.0-py3-none-any.whl (65 kB) 2024-05-22T04:24:34,111 Installing collected packages: wheel, setuptools, setuptools-ext 2024-05-22T04:24:34,335 Creating /tmp/pip-build-env-g7w591x0/overlay/local/bin 2024-05-22T04:24:34,337 changing mode of /tmp/pip-build-env-g7w591x0/overlay/local/bin/wheel to 755 2024-05-22T04:24:37,014 Successfully installed setuptools-70.0.0 setuptools-ext-0.9 wheel-0.43.0 2024-05-22T04:24:37,522 Installing build dependencies: finished with status 'done' 2024-05-22T04:24:37,526 Getting requirements to build wheel: started 2024-05-22T04:24:37,527 Running command Getting requirements to build wheel 2024-05-22T04:24:38,407 running egg_info 2024-05-22T04:24:38,411 writing FunVIP.egg-info/PKG-INFO 2024-05-22T04:24:38,416 writing dependency_links to FunVIP.egg-info/dependency_links.txt 2024-05-22T04:24:38,418 writing entry points to FunVIP.egg-info/entry_points.txt 2024-05-22T04:24:38,421 writing requirements to FunVIP.egg-info/requires.txt 2024-05-22T04:24:38,423 writing top-level names to FunVIP.egg-info/top_level.txt 2024-05-22T04:24:38,449 reading manifest file 'FunVIP.egg-info/SOURCES.txt' 2024-05-22T04:24:38,462 reading manifest template 'MANIFEST.in' 2024-05-22T04:24:38,548 adding license file 'LICENSE' 2024-05-22T04:24:38,560 writing manifest file 'FunVIP.egg-info/SOURCES.txt' 2024-05-22T04:24:38,681 Getting requirements to build wheel: finished with status 'done' 2024-05-22T04:24:38,693 Created temporary directory: /tmp/pip-modern-metadata-5s6b164w 2024-05-22T04:24:38,695 Preparing metadata (pyproject.toml): started 2024-05-22T04:24:38,697 Running command Preparing metadata (pyproject.toml) 2024-05-22T04:24:39,480 running dist_info 2024-05-22T04:24:39,485 creating /tmp/pip-modern-metadata-5s6b164w/FunVIP.egg-info 2024-05-22T04:24:39,489 writing /tmp/pip-modern-metadata-5s6b164w/FunVIP.egg-info/PKG-INFO 2024-05-22T04:24:39,493 writing dependency_links to /tmp/pip-modern-metadata-5s6b164w/FunVIP.egg-info/dependency_links.txt 2024-05-22T04:24:39,495 writing entry points to /tmp/pip-modern-metadata-5s6b164w/FunVIP.egg-info/entry_points.txt 2024-05-22T04:24:39,497 writing requirements to /tmp/pip-modern-metadata-5s6b164w/FunVIP.egg-info/requires.txt 2024-05-22T04:24:39,498 writing top-level names to /tmp/pip-modern-metadata-5s6b164w/FunVIP.egg-info/top_level.txt 2024-05-22T04:24:39,500 writing manifest file '/tmp/pip-modern-metadata-5s6b164w/FunVIP.egg-info/SOURCES.txt' 2024-05-22T04:24:39,522 reading manifest file '/tmp/pip-modern-metadata-5s6b164w/FunVIP.egg-info/SOURCES.txt' 2024-05-22T04:24:39,524 reading manifest template 'MANIFEST.in' 2024-05-22T04:24:39,606 adding license file 'LICENSE' 2024-05-22T04:24:39,614 writing manifest file '/tmp/pip-modern-metadata-5s6b164w/FunVIP.egg-info/SOURCES.txt' 2024-05-22T04:24:39,617 creating '/tmp/pip-modern-metadata-5s6b164w/FunVIP-0.3.22.dist-info' 2024-05-22T04:24:39,774 Preparing metadata (pyproject.toml): finished with status 'done' 2024-05-22T04:24:39,784 Source in /tmp/pip-wheel-x7qv2ypo/funvip_7ab58e27f5b142648b5df4342510f76c has version 0.3.22, which satisfies requirement funvip==0.3.22 from https://files.pythonhosted.org/packages/77/eb/6c02451b239042d60f03c7ed10e91d4c53c4e227d2eb1d49aa8b2246a973/funvip-0.3.22.tar.gz 2024-05-22T04:24:39,785 Removed funvip==0.3.22 from https://files.pythonhosted.org/packages/77/eb/6c02451b239042d60f03c7ed10e91d4c53c4e227d2eb1d49aa8b2246a973/funvip-0.3.22.tar.gz from build tracker '/tmp/pip-build-tracker-kcu6i32q' 2024-05-22T04:24:39,791 Created temporary directory: /tmp/pip-unpack-kobbhltq 2024-05-22T04:24:39,792 Created temporary directory: /tmp/pip-unpack-wlgquyhe 2024-05-22T04:24:39,820 Building wheels for collected packages: funvip 2024-05-22T04:24:39,824 Created temporary directory: /tmp/pip-wheel-r3dx68fx 2024-05-22T04:24:39,825 Destination directory: /tmp/pip-wheel-r3dx68fx 2024-05-22T04:24:39,827 Building wheel for funvip (pyproject.toml): started 2024-05-22T04:24:39,828 Running command Building wheel for funvip (pyproject.toml) 2024-05-22T04:24:40,596 running bdist_wheel 2024-05-22T04:24:40,613 running build 2024-05-22T04:24:40,613 running build_py 2024-05-22T04:24:40,618 creating build 2024-05-22T04:24:40,618 creating build/lib 2024-05-22T04:24:40,619 creating build/lib/funvip 2024-05-22T04:24:40,620 copying funvip/FunVIP_GUI.py -> build/lib/funvip 2024-05-22T04:24:40,623 copying funvip/__init__.py -> build/lib/funvip 2024-05-22T04:24:40,624 copying funvip/main.py -> build/lib/funvip 2024-05-22T04:24:40,627 creating build/lib/funvip/data 2024-05-22T04:24:40,628 copying funvip/data/__init__.py -> build/lib/funvip/data 2024-05-22T04:24:40,630 creating build/lib/funvip/external 2024-05-22T04:24:40,631 copying funvip/external/__init__.py -> build/lib/funvip/external 2024-05-22T04:24:40,635 creating build/lib/funvip/src 2024-05-22T04:24:40,636 copying funvip/src/version.py -> build/lib/funvip/src 2024-05-22T04:24:40,638 copying funvip/src/ncbi.py -> build/lib/funvip/src 2024-05-22T04:24:40,640 copying funvip/src/cluster.py -> build/lib/funvip/src 2024-05-22T04:24:40,643 copying funvip/src/concatenate.py -> build/lib/funvip/src 2024-05-22T04:24:40,645 copying funvip/src/opt_generator.py -> build/lib/funvip/src 2024-05-22T04:24:40,647 copying funvip/src/validate_option.py -> build/lib/funvip/src 2024-05-22T04:24:40,650 copying funvip/src/validate_input.py -> build/lib/funvip/src 2024-05-22T04:24:40,652 copying funvip/src/validation.py -> build/lib/funvip/src 2024-05-22T04:24:40,654 copying funvip/src/search.py -> build/lib/funvip/src 2024-05-22T04:24:40,657 copying funvip/src/trim.py -> build/lib/funvip/src 2024-05-22T04:24:40,659 copying funvip/src/tool.py -> build/lib/funvip/src 2024-05-22T04:24:40,661 copying funvip/src/reporter.py -> build/lib/funvip/src 2024-05-22T04:24:40,664 copying funvip/src/logger.py -> build/lib/funvip/src 2024-05-22T04:24:40,665 copying funvip/src/__init__.py -> build/lib/funvip/src 2024-05-22T04:24:40,667 copying funvip/src/dataset.py -> build/lib/funvip/src 2024-05-22T04:24:40,669 copying funvip/src/command.py -> build/lib/funvip/src 2024-05-22T04:24:40,672 copying funvip/src/logics.py -> build/lib/funvip/src 2024-05-22T04:24:40,674 copying funvip/src/hasher.py -> build/lib/funvip/src 2024-05-22T04:24:40,675 copying funvip/src/save.py -> build/lib/funvip/src 2024-05-22T04:24:40,678 copying funvip/src/modeltest.py -> build/lib/funvip/src 2024-05-22T04:24:40,680 copying funvip/src/tree.py -> build/lib/funvip/src 2024-05-22T04:24:40,682 copying funvip/src/tree_interpretation.py -> build/lib/funvip/src 2024-05-22T04:24:40,685 copying funvip/src/align.py -> build/lib/funvip/src 2024-05-22T04:24:40,687 copying funvip/src/initialize.py -> build/lib/funvip/src 2024-05-22T04:24:40,690 copying funvip/src/tree_interpretation_pipe.py -> build/lib/funvip/src 2024-05-22T04:24:40,693 copying funvip/src/ext.py -> build/lib/funvip/src 2024-05-22T04:24:40,695 running egg_info 2024-05-22T04:24:40,699 writing FunVIP.egg-info/PKG-INFO 2024-05-22T04:24:40,702 writing dependency_links to FunVIP.egg-info/dependency_links.txt 2024-05-22T04:24:40,703 writing entry points to FunVIP.egg-info/entry_points.txt 2024-05-22T04:24:40,705 writing requirements to FunVIP.egg-info/requires.txt 2024-05-22T04:24:40,706 writing top-level names to FunVIP.egg-info/top_level.txt 2024-05-22T04:24:40,722 reading manifest file 'FunVIP.egg-info/SOURCES.txt' 2024-05-22T04:24:40,728 reading manifest template 'MANIFEST.in' 2024-05-22T04:24:40,811 adding license file 'LICENSE' 2024-05-22T04:24:40,822 writing manifest file 'FunVIP.egg-info/SOURCES.txt' 2024-05-22T04:24:40,825 /tmp/pip-build-env-g7w591x0/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'funvip.external.BLAST_Windows' is absent from the `packages` configuration. 2024-05-22T04:24:40,825 !! 2024-05-22T04:24:40,826 ******************************************************************************** 2024-05-22T04:24:40,827 ############################ 2024-05-22T04:24:40,827 # Package would be ignored # 2024-05-22T04:24:40,828 ############################ 2024-05-22T04:24:40,828 Python recognizes 'funvip.external.BLAST_Windows' as an importable package[^1], 2024-05-22T04:24:40,829 but it is absent from setuptools' `packages` configuration. 2024-05-22T04:24:40,830 This leads to an ambiguous overall configuration. If you want to distribute this 2024-05-22T04:24:40,830 package, please make sure that 'funvip.external.BLAST_Windows' is explicitly added 2024-05-22T04:24:40,831 to the `packages` configuration field. 2024-05-22T04:24:40,832 Alternatively, you can also rely on setuptools' discovery methods 2024-05-22T04:24:40,833 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-05-22T04:24:40,833 instead of `find_packages(...)`/`find:`). 2024-05-22T04:24:40,834 You can read more about "package discovery" on setuptools documentation page: 2024-05-22T04:24:40,836 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-05-22T04:24:40,837 If you don't want 'funvip.external.BLAST_Windows' to be distributed and are 2024-05-22T04:24:40,837 already explicitly excluding 'funvip.external.BLAST_Windows' via 2024-05-22T04:24:40,838 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-05-22T04:24:40,839 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-05-22T04:24:40,839 combination with a more fine grained `package-data` configuration. 2024-05-22T04:24:40,841 You can read more about "package data files" on setuptools documentation page: 2024-05-22T04:24:40,842 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-05-22T04:24:40,843 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-05-22T04:24:40,843 even if it does not contain any `.py` files. 2024-05-22T04:24:40,844 On the other hand, currently there is no concept of package data 2024-05-22T04:24:40,844 directory, all directories are treated like packages. 2024-05-22T04:24:40,845 ******************************************************************************** 2024-05-22T04:24:40,846 !! 2024-05-22T04:24:40,846 check.warn(importable) 2024-05-22T04:24:40,847 /tmp/pip-build-env-g7w591x0/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'funvip.external.BLAST_Windows.bin' is absent from the `packages` configuration. 2024-05-22T04:24:40,847 !! 2024-05-22T04:24:40,849 ******************************************************************************** 2024-05-22T04:24:40,849 ############################ 2024-05-22T04:24:40,850 # Package would be ignored # 2024-05-22T04:24:40,851 ############################ 2024-05-22T04:24:40,851 Python recognizes 'funvip.external.BLAST_Windows.bin' as an importable package[^1], 2024-05-22T04:24:40,851 but it is absent from setuptools' `packages` configuration. 2024-05-22T04:24:40,852 This leads to an ambiguous overall configuration. If you want to distribute this 2024-05-22T04:24:40,853 package, please make sure that 'funvip.external.BLAST_Windows.bin' is explicitly added 2024-05-22T04:24:40,853 to the `packages` configuration field. 2024-05-22T04:24:40,854 Alternatively, you can also rely on setuptools' discovery methods 2024-05-22T04:24:40,854 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-05-22T04:24:40,855 instead of `find_packages(...)`/`find:`). 2024-05-22T04:24:40,856 You can read more about "package discovery" on setuptools documentation page: 2024-05-22T04:24:40,856 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-05-22T04:24:40,857 If you don't want 'funvip.external.BLAST_Windows.bin' to be distributed and are 2024-05-22T04:24:40,858 already explicitly excluding 'funvip.external.BLAST_Windows.bin' via 2024-05-22T04:24:40,858 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-05-22T04:24:40,859 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-05-22T04:24:40,859 combination with a more fine grained `package-data` configuration. 2024-05-22T04:24:40,860 You can read more about "package data files" on setuptools documentation page: 2024-05-22T04:24:40,861 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-05-22T04:24:40,862 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-05-22T04:24:40,863 even if it does not contain any `.py` files. 2024-05-22T04:24:40,863 On the other hand, currently there is no concept of package data 2024-05-22T04:24:40,864 directory, all directories are treated like packages. 2024-05-22T04:24:40,865 ******************************************************************************** 2024-05-22T04:24:40,865 !! 2024-05-22T04:24:40,866 check.warn(importable) 2024-05-22T04:24:40,867 /tmp/pip-build-env-g7w591x0/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'funvip.external.BLAST_Windows.doc' is absent from the `packages` configuration. 2024-05-22T04:24:40,867 !! 2024-05-22T04:24:40,869 ******************************************************************************** 2024-05-22T04:24:40,870 ############################ 2024-05-22T04:24:40,870 # Package would be ignored # 2024-05-22T04:24:40,871 ############################ 2024-05-22T04:24:40,872 Python recognizes 'funvip.external.BLAST_Windows.doc' as an importable package[^1], 2024-05-22T04:24:40,872 but it is absent from setuptools' `packages` configuration. 2024-05-22T04:24:40,874 This leads to an ambiguous overall configuration. If you want to distribute this 2024-05-22T04:24:40,874 package, please make sure that 'funvip.external.BLAST_Windows.doc' is explicitly added 2024-05-22T04:24:40,875 to the `packages` configuration field. 2024-05-22T04:24:40,876 Alternatively, you can also rely on setuptools' discovery methods 2024-05-22T04:24:40,877 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-05-22T04:24:40,877 instead of `find_packages(...)`/`find:`). 2024-05-22T04:24:40,879 You can read more about "package discovery" on setuptools documentation page: 2024-05-22T04:24:40,880 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-05-22T04:24:40,881 If you don't want 'funvip.external.BLAST_Windows.doc' to be distributed and are 2024-05-22T04:24:40,882 already explicitly excluding 'funvip.external.BLAST_Windows.doc' via 2024-05-22T04:24:40,882 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-05-22T04:24:40,883 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-05-22T04:24:40,883 combination with a more fine grained `package-data` configuration. 2024-05-22T04:24:40,884 You can read more about "package data files" on setuptools documentation page: 2024-05-22T04:24:40,885 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-05-22T04:24:40,887 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-05-22T04:24:40,887 even if it does not contain any `.py` files. 2024-05-22T04:24:40,888 On the other hand, currently there is no concept of package data 2024-05-22T04:24:40,888 directory, all directories are treated like packages. 2024-05-22T04:24:40,889 ******************************************************************************** 2024-05-22T04:24:40,890 !! 2024-05-22T04:24:40,890 check.warn(importable) 2024-05-22T04:24:40,891 /tmp/pip-build-env-g7w591x0/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'funvip.external.FastTree_Windows' is absent from the `packages` configuration. 2024-05-22T04:24:40,891 !! 2024-05-22T04:24:40,892 ******************************************************************************** 2024-05-22T04:24:40,893 ############################ 2024-05-22T04:24:40,893 # Package would be ignored # 2024-05-22T04:24:40,894 ############################ 2024-05-22T04:24:40,895 Python recognizes 'funvip.external.FastTree_Windows' as an importable package[^1], 2024-05-22T04:24:40,895 but it is absent from setuptools' `packages` configuration. 2024-05-22T04:24:40,896 This leads to an ambiguous overall configuration. If you want to distribute this 2024-05-22T04:24:40,897 package, please make sure that 'funvip.external.FastTree_Windows' is explicitly added 2024-05-22T04:24:40,897 to the `packages` configuration field. 2024-05-22T04:24:40,899 Alternatively, you can also rely on setuptools' discovery methods 2024-05-22T04:24:40,899 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-05-22T04:24:40,900 instead of `find_packages(...)`/`find:`). 2024-05-22T04:24:40,901 You can read more about "package discovery" on setuptools documentation page: 2024-05-22T04:24:40,902 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-05-22T04:24:40,903 If you don't want 'funvip.external.FastTree_Windows' to be distributed and are 2024-05-22T04:24:40,904 already explicitly excluding 'funvip.external.FastTree_Windows' via 2024-05-22T04:24:40,905 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-05-22T04:24:40,905 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-05-22T04:24:40,906 combination with a more fine grained `package-data` configuration. 2024-05-22T04:24:40,907 You can read more about "package data files" on setuptools documentation page: 2024-05-22T04:24:40,908 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-05-22T04:24:40,910 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-05-22T04:24:40,911 even if it does not contain any `.py` files. 2024-05-22T04:24:40,911 On the other hand, currently there is no concept of package data 2024-05-22T04:24:40,912 directory, all directories are treated like packages. 2024-05-22T04:24:40,913 ******************************************************************************** 2024-05-22T04:24:40,914 !! 2024-05-22T04:24:40,914 check.warn(importable) 2024-05-22T04:24:40,915 /tmp/pip-build-env-g7w591x0/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'funvip.external.RAxML_Windows' is absent from the `packages` configuration. 2024-05-22T04:24:40,915 !! 2024-05-22T04:24:40,916 ******************************************************************************** 2024-05-22T04:24:40,916 ############################ 2024-05-22T04:24:40,917 # Package would be ignored # 2024-05-22T04:24:40,917 ############################ 2024-05-22T04:24:40,918 Python recognizes 'funvip.external.RAxML_Windows' as an importable package[^1], 2024-05-22T04:24:40,918 but it is absent from setuptools' `packages` configuration. 2024-05-22T04:24:40,919 This leads to an ambiguous overall configuration. If you want to distribute this 2024-05-22T04:24:40,920 package, please make sure that 'funvip.external.RAxML_Windows' is explicitly added 2024-05-22T04:24:40,920 to the `packages` configuration field. 2024-05-22T04:24:40,921 Alternatively, you can also rely on setuptools' discovery methods 2024-05-22T04:24:40,922 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-05-22T04:24:40,922 instead of `find_packages(...)`/`find:`). 2024-05-22T04:24:40,923 You can read more about "package discovery" on setuptools documentation page: 2024-05-22T04:24:40,924 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-05-22T04:24:40,925 If you don't want 'funvip.external.RAxML_Windows' to be distributed and are 2024-05-22T04:24:40,926 already explicitly excluding 'funvip.external.RAxML_Windows' via 2024-05-22T04:24:40,926 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-05-22T04:24:40,927 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-05-22T04:24:40,927 combination with a more fine grained `package-data` configuration. 2024-05-22T04:24:40,928 You can read more about "package data files" on setuptools documentation page: 2024-05-22T04:24:40,930 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-05-22T04:24:40,931 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-05-22T04:24:40,932 even if it does not contain any `.py` files. 2024-05-22T04:24:40,933 On the other hand, currently there is no concept of package data 2024-05-22T04:24:40,933 directory, all directories are treated like packages. 2024-05-22T04:24:40,934 ******************************************************************************** 2024-05-22T04:24:40,935 !! 2024-05-22T04:24:40,935 check.warn(importable) 2024-05-22T04:24:40,936 /tmp/pip-build-env-g7w591x0/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'funvip.external.iqtree' is absent from the `packages` configuration. 2024-05-22T04:24:40,937 !! 2024-05-22T04:24:40,938 ******************************************************************************** 2024-05-22T04:24:40,938 ############################ 2024-05-22T04:24:40,939 # Package would be ignored # 2024-05-22T04:24:40,939 ############################ 2024-05-22T04:24:40,940 Python recognizes 'funvip.external.iqtree' as an importable package[^1], 2024-05-22T04:24:40,940 but it is absent from setuptools' `packages` configuration. 2024-05-22T04:24:40,942 This leads to an ambiguous overall configuration. If you want to distribute this 2024-05-22T04:24:40,942 package, please make sure that 'funvip.external.iqtree' is explicitly added 2024-05-22T04:24:40,943 to the `packages` configuration field. 2024-05-22T04:24:40,945 Alternatively, you can also rely on setuptools' discovery methods 2024-05-22T04:24:40,945 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-05-22T04:24:40,946 instead of `find_packages(...)`/`find:`). 2024-05-22T04:24:40,947 You can read more about "package discovery" on setuptools documentation page: 2024-05-22T04:24:40,948 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-05-22T04:24:40,949 If you don't want 'funvip.external.iqtree' to be distributed and are 2024-05-22T04:24:40,949 already explicitly excluding 'funvip.external.iqtree' via 2024-05-22T04:24:40,950 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-05-22T04:24:40,950 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-05-22T04:24:40,951 combination with a more fine grained `package-data` configuration. 2024-05-22T04:24:40,951 You can read more about "package data files" on setuptools documentation page: 2024-05-22T04:24:40,952 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-05-22T04:24:40,954 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-05-22T04:24:40,954 even if it does not contain any `.py` files. 2024-05-22T04:24:40,955 On the other hand, currently there is no concept of package data 2024-05-22T04:24:40,955 directory, all directories are treated like packages. 2024-05-22T04:24:40,956 ******************************************************************************** 2024-05-22T04:24:40,957 !! 2024-05-22T04:24:40,958 check.warn(importable) 2024-05-22T04:24:40,958 /tmp/pip-build-env-g7w591x0/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'funvip.external.iqtree.bin' is absent from the `packages` configuration. 2024-05-22T04:24:40,959 !! 2024-05-22T04:24:40,960 ******************************************************************************** 2024-05-22T04:24:40,961 ############################ 2024-05-22T04:24:40,961 # Package would be ignored # 2024-05-22T04:24:40,962 ############################ 2024-05-22T04:24:40,962 Python recognizes 'funvip.external.iqtree.bin' as an importable package[^1], 2024-05-22T04:24:40,963 but it is absent from setuptools' `packages` configuration. 2024-05-22T04:24:40,964 This leads to an ambiguous overall configuration. If you want to distribute this 2024-05-22T04:24:40,965 package, please make sure that 'funvip.external.iqtree.bin' is explicitly added 2024-05-22T04:24:40,965 to the `packages` configuration field. 2024-05-22T04:24:40,966 Alternatively, you can also rely on setuptools' discovery methods 2024-05-22T04:24:40,967 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-05-22T04:24:40,967 instead of `find_packages(...)`/`find:`). 2024-05-22T04:24:40,968 You can read more about "package discovery" on setuptools documentation page: 2024-05-22T04:24:40,969 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-05-22T04:24:40,971 If you don't want 'funvip.external.iqtree.bin' to be distributed and are 2024-05-22T04:24:40,971 already explicitly excluding 'funvip.external.iqtree.bin' via 2024-05-22T04:24:40,972 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-05-22T04:24:40,972 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-05-22T04:24:40,973 combination with a more fine grained `package-data` configuration. 2024-05-22T04:24:40,974 You can read more about "package data files" on setuptools documentation page: 2024-05-22T04:24:40,975 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-05-22T04:24:40,977 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-05-22T04:24:40,977 even if it does not contain any `.py` files. 2024-05-22T04:24:40,978 On the other hand, currently there is no concept of package data 2024-05-22T04:24:40,978 directory, all directories are treated like packages. 2024-05-22T04:24:40,979 ******************************************************************************** 2024-05-22T04:24:40,980 !! 2024-05-22T04:24:40,980 check.warn(importable) 2024-05-22T04:24:40,981 /tmp/pip-build-env-g7w591x0/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'funvip.external.mmseqs_Windows' is absent from the `packages` configuration. 2024-05-22T04:24:40,981 !! 2024-05-22T04:24:40,982 ******************************************************************************** 2024-05-22T04:24:40,983 ############################ 2024-05-22T04:24:40,983 # Package would be ignored # 2024-05-22T04:24:40,984 ############################ 2024-05-22T04:24:40,984 Python recognizes 'funvip.external.mmseqs_Windows' as an importable package[^1], 2024-05-22T04:24:40,985 but it is absent from setuptools' `packages` configuration. 2024-05-22T04:24:40,986 This leads to an ambiguous overall configuration. If you want to distribute this 2024-05-22T04:24:40,986 package, please make sure that 'funvip.external.mmseqs_Windows' is explicitly added 2024-05-22T04:24:40,986 to the `packages` configuration field. 2024-05-22T04:24:40,987 Alternatively, you can also rely on setuptools' discovery methods 2024-05-22T04:24:40,988 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-05-22T04:24:40,989 instead of `find_packages(...)`/`find:`). 2024-05-22T04:24:40,990 You can read more about "package discovery" on setuptools documentation page: 2024-05-22T04:24:40,991 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-05-22T04:24:40,992 If you don't want 'funvip.external.mmseqs_Windows' to be distributed and are 2024-05-22T04:24:40,993 already explicitly excluding 'funvip.external.mmseqs_Windows' via 2024-05-22T04:24:40,994 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-05-22T04:24:40,994 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-05-22T04:24:40,995 combination with a more fine grained `package-data` configuration. 2024-05-22T04:24:40,996 You can read more about "package data files" on setuptools documentation page: 2024-05-22T04:24:40,998 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-05-22T04:24:41,099 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-05-22T04:24:41,150 even if it does not contain any `.py` files. 2024-05-22T04:24:41,176 On the other hand, currently there is no concept of package data 2024-05-22T04:24:41,192 directory, all directories are treated like packages. 2024-05-22T04:24:41,212 ******************************************************************************** 2024-05-22T04:24:41,267 !! 2024-05-22T04:24:41,268 check.warn(importable) 2024-05-22T04:24:41,269 /tmp/pip-build-env-g7w591x0/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'funvip.external.mmseqs_Windows.bin' is absent from the `packages` configuration. 2024-05-22T04:24:41,269 !! 2024-05-22T04:24:41,270 ******************************************************************************** 2024-05-22T04:24:41,271 ############################ 2024-05-22T04:24:41,271 # Package would be ignored # 2024-05-22T04:24:41,272 ############################ 2024-05-22T04:24:41,273 Python recognizes 'funvip.external.mmseqs_Windows.bin' as an importable package[^1], 2024-05-22T04:24:41,273 but it is absent from setuptools' `packages` configuration. 2024-05-22T04:24:41,274 This leads to an ambiguous overall configuration. If you want to distribute this 2024-05-22T04:24:41,274 package, please make sure that 'funvip.external.mmseqs_Windows.bin' is explicitly added 2024-05-22T04:24:41,274 to the `packages` configuration field. 2024-05-22T04:24:41,275 Alternatively, you can also rely on setuptools' discovery methods 2024-05-22T04:24:41,276 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-05-22T04:24:41,276 instead of `find_packages(...)`/`find:`). 2024-05-22T04:24:41,277 You can read more about "package discovery" on setuptools documentation page: 2024-05-22T04:24:41,278 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-05-22T04:24:41,278 If you don't want 'funvip.external.mmseqs_Windows.bin' to be distributed and are 2024-05-22T04:24:41,279 already explicitly excluding 'funvip.external.mmseqs_Windows.bin' via 2024-05-22T04:24:41,279 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-05-22T04:24:41,280 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-05-22T04:24:41,281 combination with a more fine grained `package-data` configuration. 2024-05-22T04:24:41,283 You can read more about "package data files" on setuptools documentation page: 2024-05-22T04:24:41,284 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-05-22T04:24:41,286 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-05-22T04:24:41,286 even if it does not contain any `.py` files. 2024-05-22T04:24:41,287 On the other hand, currently there is no concept of package data 2024-05-22T04:24:41,287 directory, all directories are treated like packages. 2024-05-22T04:24:41,288 ******************************************************************************** 2024-05-22T04:24:41,289 !! 2024-05-22T04:24:41,289 check.warn(importable) 2024-05-22T04:24:41,290 /tmp/pip-build-env-g7w591x0/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'funvip.external.mmseqs_Windows.examples' is absent from the `packages` configuration. 2024-05-22T04:24:41,290 !! 2024-05-22T04:24:41,291 ******************************************************************************** 2024-05-22T04:24:41,292 ############################ 2024-05-22T04:24:41,292 # Package would be ignored # 2024-05-22T04:24:41,293 ############################ 2024-05-22T04:24:41,293 Python recognizes 'funvip.external.mmseqs_Windows.examples' as an importable package[^1], 2024-05-22T04:24:41,294 but it is absent from setuptools' `packages` configuration. 2024-05-22T04:24:41,295 This leads to an ambiguous overall configuration. If you want to distribute this 2024-05-22T04:24:41,295 package, please make sure that 'funvip.external.mmseqs_Windows.examples' is explicitly added 2024-05-22T04:24:41,296 to the `packages` configuration field. 2024-05-22T04:24:41,297 Alternatively, you can also rely on setuptools' discovery methods 2024-05-22T04:24:41,298 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-05-22T04:24:41,298 instead of `find_packages(...)`/`find:`). 2024-05-22T04:24:41,299 You can read more about "package discovery" on setuptools documentation page: 2024-05-22T04:24:41,300 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-05-22T04:24:41,301 If you don't want 'funvip.external.mmseqs_Windows.examples' to be distributed and are 2024-05-22T04:24:41,302 already explicitly excluding 'funvip.external.mmseqs_Windows.examples' via 2024-05-22T04:24:41,303 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-05-22T04:24:41,303 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-05-22T04:24:41,304 combination with a more fine grained `package-data` configuration. 2024-05-22T04:24:41,304 You can read more about "package data files" on setuptools documentation page: 2024-05-22T04:24:41,305 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-05-22T04:24:41,307 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-05-22T04:24:41,308 even if it does not contain any `.py` files. 2024-05-22T04:24:41,308 On the other hand, currently there is no concept of package data 2024-05-22T04:24:41,309 directory, all directories are treated like packages. 2024-05-22T04:24:41,309 ******************************************************************************** 2024-05-22T04:24:41,310 !! 2024-05-22T04:24:41,311 check.warn(importable) 2024-05-22T04:24:41,311 /tmp/pip-build-env-g7w591x0/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'funvip.external.mmseqs_Windows.matrices' is absent from the `packages` configuration. 2024-05-22T04:24:41,312 !! 2024-05-22T04:24:41,313 ******************************************************************************** 2024-05-22T04:24:41,313 ############################ 2024-05-22T04:24:41,313 # Package would be ignored # 2024-05-22T04:24:41,314 ############################ 2024-05-22T04:24:41,314 Python recognizes 'funvip.external.mmseqs_Windows.matrices' as an importable package[^1], 2024-05-22T04:24:41,315 but it is absent from setuptools' `packages` configuration. 2024-05-22T04:24:41,316 This leads to an ambiguous overall configuration. If you want to distribute this 2024-05-22T04:24:41,317 package, please make sure that 'funvip.external.mmseqs_Windows.matrices' is explicitly added 2024-05-22T04:24:41,317 to the `packages` configuration field. 2024-05-22T04:24:41,318 Alternatively, you can also rely on setuptools' discovery methods 2024-05-22T04:24:41,319 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-05-22T04:24:41,320 instead of `find_packages(...)`/`find:`). 2024-05-22T04:24:41,321 You can read more about "package discovery" on setuptools documentation page: 2024-05-22T04:24:41,322 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-05-22T04:24:41,323 If you don't want 'funvip.external.mmseqs_Windows.matrices' to be distributed and are 2024-05-22T04:24:41,324 already explicitly excluding 'funvip.external.mmseqs_Windows.matrices' via 2024-05-22T04:24:41,324 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-05-22T04:24:41,325 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-05-22T04:24:41,325 combination with a more fine grained `package-data` configuration. 2024-05-22T04:24:41,327 You can read more about "package data files" on setuptools documentation page: 2024-05-22T04:24:41,328 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-05-22T04:24:41,330 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-05-22T04:24:41,330 even if it does not contain any `.py` files. 2024-05-22T04:24:41,331 On the other hand, currently there is no concept of package data 2024-05-22T04:24:41,332 directory, all directories are treated like packages. 2024-05-22T04:24:41,332 ******************************************************************************** 2024-05-22T04:24:41,334 !! 2024-05-22T04:24:41,334 check.warn(importable) 2024-05-22T04:24:41,335 /tmp/pip-build-env-g7w591x0/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'funvip.external.mmseqs_Windows.util' is absent from the `packages` configuration. 2024-05-22T04:24:41,335 !! 2024-05-22T04:24:41,336 ******************************************************************************** 2024-05-22T04:24:41,337 ############################ 2024-05-22T04:24:41,337 # Package would be ignored # 2024-05-22T04:24:41,337 ############################ 2024-05-22T04:24:41,338 Python recognizes 'funvip.external.mmseqs_Windows.util' as an importable package[^1], 2024-05-22T04:24:41,338 but it is absent from setuptools' `packages` configuration. 2024-05-22T04:24:41,339 This leads to an ambiguous overall configuration. If you want to distribute this 2024-05-22T04:24:41,340 package, please make sure that 'funvip.external.mmseqs_Windows.util' is explicitly added 2024-05-22T04:24:41,340 to the `packages` configuration field. 2024-05-22T04:24:41,341 Alternatively, you can also rely on setuptools' discovery methods 2024-05-22T04:24:41,342 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-05-22T04:24:41,342 instead of `find_packages(...)`/`find:`). 2024-05-22T04:24:41,343 You can read more about "package discovery" on setuptools documentation page: 2024-05-22T04:24:41,344 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-05-22T04:24:41,345 If you don't want 'funvip.external.mmseqs_Windows.util' to be distributed and are 2024-05-22T04:24:41,345 already explicitly excluding 'funvip.external.mmseqs_Windows.util' via 2024-05-22T04:24:41,346 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-05-22T04:24:41,347 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-05-22T04:24:41,347 combination with a more fine grained `package-data` configuration. 2024-05-22T04:24:41,348 You can read more about "package data files" on setuptools documentation page: 2024-05-22T04:24:41,350 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-05-22T04:24:41,352 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-05-22T04:24:41,352 even if it does not contain any `.py` files. 2024-05-22T04:24:41,353 On the other hand, currently there is no concept of package data 2024-05-22T04:24:41,354 directory, all directories are treated like packages. 2024-05-22T04:24:41,354 ******************************************************************************** 2024-05-22T04:24:41,355 !! 2024-05-22T04:24:41,356 check.warn(importable) 2024-05-22T04:24:41,357 /tmp/pip-build-env-g7w591x0/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'funvip.src.__pycache__' is absent from the `packages` configuration. 2024-05-22T04:24:41,357 !! 2024-05-22T04:24:41,358 ******************************************************************************** 2024-05-22T04:24:41,359 ############################ 2024-05-22T04:24:41,359 # Package would be ignored # 2024-05-22T04:24:41,360 ############################ 2024-05-22T04:24:41,361 Python recognizes 'funvip.src.__pycache__' as an importable package[^1], 2024-05-22T04:24:41,361 but it is absent from setuptools' `packages` configuration. 2024-05-22T04:24:41,363 This leads to an ambiguous overall configuration. If you want to distribute this 2024-05-22T04:24:41,363 package, please make sure that 'funvip.src.__pycache__' is explicitly added 2024-05-22T04:24:41,364 to the `packages` configuration field. 2024-05-22T04:24:41,365 Alternatively, you can also rely on setuptools' discovery methods 2024-05-22T04:24:41,366 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-05-22T04:24:41,366 instead of `find_packages(...)`/`find:`). 2024-05-22T04:24:41,367 You can read more about "package discovery" on setuptools documentation page: 2024-05-22T04:24:41,368 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-05-22T04:24:41,369 If you don't want 'funvip.src.__pycache__' to be distributed and are 2024-05-22T04:24:41,369 already explicitly excluding 'funvip.src.__pycache__' via 2024-05-22T04:24:41,370 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-05-22T04:24:41,370 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-05-22T04:24:41,371 combination with a more fine grained `package-data` configuration. 2024-05-22T04:24:41,372 You can read more about "package data files" on setuptools documentation page: 2024-05-22T04:24:41,373 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-05-22T04:24:41,375 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-05-22T04:24:41,375 even if it does not contain any `.py` files. 2024-05-22T04:24:41,376 On the other hand, currently there is no concept of package data 2024-05-22T04:24:41,376 directory, all directories are treated like packages. 2024-05-22T04:24:41,377 ******************************************************************************** 2024-05-22T04:24:41,378 !! 2024-05-22T04:24:41,378 check.warn(importable) 2024-05-22T04:24:41,379 /tmp/pip-build-env-g7w591x0/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'funvip.src.templates' is absent from the `packages` configuration. 2024-05-22T04:24:41,380 !! 2024-05-22T04:24:41,381 ******************************************************************************** 2024-05-22T04:24:41,381 ############################ 2024-05-22T04:24:41,382 # Package would be ignored # 2024-05-22T04:24:41,383 ############################ 2024-05-22T04:24:41,383 Python recognizes 'funvip.src.templates' as an importable package[^1], 2024-05-22T04:24:41,384 but it is absent from setuptools' `packages` configuration. 2024-05-22T04:24:41,385 This leads to an ambiguous overall configuration. If you want to distribute this 2024-05-22T04:24:41,386 package, please make sure that 'funvip.src.templates' is explicitly added 2024-05-22T04:24:41,386 to the `packages` configuration field. 2024-05-22T04:24:41,387 Alternatively, you can also rely on setuptools' discovery methods 2024-05-22T04:24:41,388 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-05-22T04:24:41,389 instead of `find_packages(...)`/`find:`). 2024-05-22T04:24:41,390 You can read more about "package discovery" on setuptools documentation page: 2024-05-22T04:24:41,391 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-05-22T04:24:41,392 If you don't want 'funvip.src.templates' to be distributed and are 2024-05-22T04:24:41,399 already explicitly excluding 'funvip.src.templates' via 2024-05-22T04:24:41,405 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-05-22T04:24:41,431 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-05-22T04:24:41,448 combination with a more fine grained `package-data` configuration. 2024-05-22T04:24:41,497 You can read more about "package data files" on setuptools documentation page: 2024-05-22T04:24:41,539 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-05-22T04:24:41,614 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-05-22T04:24:41,615 even if it does not contain any `.py` files. 2024-05-22T04:24:41,615 On the other hand, currently there is no concept of package data 2024-05-22T04:24:41,616 directory, all directories are treated like packages. 2024-05-22T04:24:41,617 ******************************************************************************** 2024-05-22T04:24:41,618 !! 2024-05-22T04:24:41,618 check.warn(importable) 2024-05-22T04:24:41,619 /tmp/pip-build-env-g7w591x0/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'funvip.test_dataset.penicillium' is absent from the `packages` configuration. 2024-05-22T04:24:41,619 !! 2024-05-22T04:24:41,620 ******************************************************************************** 2024-05-22T04:24:41,621 ############################ 2024-05-22T04:24:41,621 # Package would be ignored # 2024-05-22T04:24:41,622 ############################ 2024-05-22T04:24:41,622 Python recognizes 'funvip.test_dataset.penicillium' as an importable package[^1], 2024-05-22T04:24:41,622 but it is absent from setuptools' `packages` configuration. 2024-05-22T04:24:41,623 This leads to an ambiguous overall configuration. If you want to distribute this 2024-05-22T04:24:41,624 package, please make sure that 'funvip.test_dataset.penicillium' is explicitly added 2024-05-22T04:24:41,625 to the `packages` configuration field. 2024-05-22T04:24:41,626 Alternatively, you can also rely on setuptools' discovery methods 2024-05-22T04:24:41,626 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-05-22T04:24:41,627 instead of `find_packages(...)`/`find:`). 2024-05-22T04:24:41,628 You can read more about "package discovery" on setuptools documentation page: 2024-05-22T04:24:41,630 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-05-22T04:24:41,631 If you don't want 'funvip.test_dataset.penicillium' to be distributed and are 2024-05-22T04:24:41,632 already explicitly excluding 'funvip.test_dataset.penicillium' via 2024-05-22T04:24:41,633 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-05-22T04:24:41,634 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-05-22T04:24:41,635 combination with a more fine grained `package-data` configuration. 2024-05-22T04:24:41,636 You can read more about "package data files" on setuptools documentation page: 2024-05-22T04:24:41,638 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-05-22T04:24:41,641 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-05-22T04:24:41,641 even if it does not contain any `.py` files. 2024-05-22T04:24:41,642 On the other hand, currently there is no concept of package data 2024-05-22T04:24:41,643 directory, all directories are treated like packages. 2024-05-22T04:24:41,644 ******************************************************************************** 2024-05-22T04:24:41,646 !! 2024-05-22T04:24:41,647 check.warn(importable) 2024-05-22T04:24:41,648 /tmp/pip-build-env-g7w591x0/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'funvip.test_dataset.penicillium.DB' is absent from the `packages` configuration. 2024-05-22T04:24:41,649 !! 2024-05-22T04:24:41,650 ******************************************************************************** 2024-05-22T04:24:41,651 ############################ 2024-05-22T04:24:41,652 # Package would be ignored # 2024-05-22T04:24:41,652 ############################ 2024-05-22T04:24:41,654 Python recognizes 'funvip.test_dataset.penicillium.DB' as an importable package[^1], 2024-05-22T04:24:41,654 but it is absent from setuptools' `packages` configuration. 2024-05-22T04:24:41,656 This leads to an ambiguous overall configuration. If you want to distribute this 2024-05-22T04:24:41,657 package, please make sure that 'funvip.test_dataset.penicillium.DB' is explicitly added 2024-05-22T04:24:41,657 to the `packages` configuration field. 2024-05-22T04:24:41,659 Alternatively, you can also rely on setuptools' discovery methods 2024-05-22T04:24:41,660 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-05-22T04:24:41,661 instead of `find_packages(...)`/`find:`). 2024-05-22T04:24:41,662 You can read more about "package discovery" on setuptools documentation page: 2024-05-22T04:24:41,663 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-05-22T04:24:41,664 If you don't want 'funvip.test_dataset.penicillium.DB' to be distributed and are 2024-05-22T04:24:41,664 already explicitly excluding 'funvip.test_dataset.penicillium.DB' via 2024-05-22T04:24:41,665 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-05-22T04:24:41,665 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-05-22T04:24:41,666 combination with a more fine grained `package-data` configuration. 2024-05-22T04:24:41,667 You can read more about "package data files" on setuptools documentation page: 2024-05-22T04:24:41,668 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-05-22T04:24:41,670 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-05-22T04:24:41,670 even if it does not contain any `.py` files. 2024-05-22T04:24:41,671 On the other hand, currently there is no concept of package data 2024-05-22T04:24:41,672 directory, all directories are treated like packages. 2024-05-22T04:24:41,672 ******************************************************************************** 2024-05-22T04:24:41,674 !! 2024-05-22T04:24:41,675 check.warn(importable) 2024-05-22T04:24:41,675 /tmp/pip-build-env-g7w591x0/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'funvip.test_dataset.penicillium.Query' is absent from the `packages` configuration. 2024-05-22T04:24:41,676 !! 2024-05-22T04:24:41,677 ******************************************************************************** 2024-05-22T04:24:41,678 ############################ 2024-05-22T04:24:41,678 # Package would be ignored # 2024-05-22T04:24:41,679 ############################ 2024-05-22T04:24:41,680 Python recognizes 'funvip.test_dataset.penicillium.Query' as an importable package[^1], 2024-05-22T04:24:41,680 but it is absent from setuptools' `packages` configuration. 2024-05-22T04:24:41,682 This leads to an ambiguous overall configuration. If you want to distribute this 2024-05-22T04:24:41,682 package, please make sure that 'funvip.test_dataset.penicillium.Query' is explicitly added 2024-05-22T04:24:41,683 to the `packages` configuration field. 2024-05-22T04:24:41,684 Alternatively, you can also rely on setuptools' discovery methods 2024-05-22T04:24:41,685 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-05-22T04:24:41,685 instead of `find_packages(...)`/`find:`). 2024-05-22T04:24:41,687 You can read more about "package discovery" on setuptools documentation page: 2024-05-22T04:24:41,688 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-05-22T04:24:41,689 If you don't want 'funvip.test_dataset.penicillium.Query' to be distributed and are 2024-05-22T04:24:41,690 already explicitly excluding 'funvip.test_dataset.penicillium.Query' via 2024-05-22T04:24:41,691 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-05-22T04:24:41,691 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-05-22T04:24:41,692 combination with a more fine grained `package-data` configuration. 2024-05-22T04:24:41,693 You can read more about "package data files" on setuptools documentation page: 2024-05-22T04:24:41,694 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-05-22T04:24:41,695 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-05-22T04:24:41,696 even if it does not contain any `.py` files. 2024-05-22T04:24:41,696 On the other hand, currently there is no concept of package data 2024-05-22T04:24:41,697 directory, all directories are treated like packages. 2024-05-22T04:24:41,697 ******************************************************************************** 2024-05-22T04:24:41,698 !! 2024-05-22T04:24:41,698 check.warn(importable) 2024-05-22T04:24:41,699 /tmp/pip-build-env-g7w591x0/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'funvip.test_dataset.terrei' is absent from the `packages` configuration. 2024-05-22T04:24:41,699 !! 2024-05-22T04:24:41,701 ******************************************************************************** 2024-05-22T04:24:41,701 ############################ 2024-05-22T04:24:41,701 # Package would be ignored # 2024-05-22T04:24:41,702 ############################ 2024-05-22T04:24:41,702 Python recognizes 'funvip.test_dataset.terrei' as an importable package[^1], 2024-05-22T04:24:41,703 but it is absent from setuptools' `packages` configuration. 2024-05-22T04:24:41,704 This leads to an ambiguous overall configuration. If you want to distribute this 2024-05-22T04:24:41,705 package, please make sure that 'funvip.test_dataset.terrei' is explicitly added 2024-05-22T04:24:41,705 to the `packages` configuration field. 2024-05-22T04:24:41,707 Alternatively, you can also rely on setuptools' discovery methods 2024-05-22T04:24:41,707 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-05-22T04:24:41,708 instead of `find_packages(...)`/`find:`). 2024-05-22T04:24:41,709 You can read more about "package discovery" on setuptools documentation page: 2024-05-22T04:24:41,710 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-05-22T04:24:41,712 If you don't want 'funvip.test_dataset.terrei' to be distributed and are 2024-05-22T04:24:41,720 already explicitly excluding 'funvip.test_dataset.terrei' via 2024-05-22T04:24:41,736 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-05-22T04:24:41,764 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-05-22T04:24:41,795 combination with a more fine grained `package-data` configuration. 2024-05-22T04:24:41,846 You can read more about "package data files" on setuptools documentation page: 2024-05-22T04:24:41,923 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-05-22T04:24:41,925 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-05-22T04:24:41,925 even if it does not contain any `.py` files. 2024-05-22T04:24:41,926 On the other hand, currently there is no concept of package data 2024-05-22T04:24:41,927 directory, all directories are treated like packages. 2024-05-22T04:24:41,927 ******************************************************************************** 2024-05-22T04:24:41,930 !! 2024-05-22T04:24:41,931 check.warn(importable) 2024-05-22T04:24:41,932 /tmp/pip-build-env-g7w591x0/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'funvip.test_dataset.terrei.DB' is absent from the `packages` configuration. 2024-05-22T04:24:41,932 !! 2024-05-22T04:24:41,934 ******************************************************************************** 2024-05-22T04:24:41,935 ############################ 2024-05-22T04:24:41,937 # Package would be ignored # 2024-05-22T04:24:41,939 ############################ 2024-05-22T04:24:41,940 Python recognizes 'funvip.test_dataset.terrei.DB' as an importable package[^1], 2024-05-22T04:24:41,940 but it is absent from setuptools' `packages` configuration. 2024-05-22T04:24:41,941 This leads to an ambiguous overall configuration. If you want to distribute this 2024-05-22T04:24:41,941 package, please make sure that 'funvip.test_dataset.terrei.DB' is explicitly added 2024-05-22T04:24:41,942 to the `packages` configuration field. 2024-05-22T04:24:41,944 Alternatively, you can also rely on setuptools' discovery methods 2024-05-22T04:24:41,944 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-05-22T04:24:41,945 instead of `find_packages(...)`/`find:`). 2024-05-22T04:24:41,946 You can read more about "package discovery" on setuptools documentation page: 2024-05-22T04:24:41,948 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-05-22T04:24:41,950 If you don't want 'funvip.test_dataset.terrei.DB' to be distributed and are 2024-05-22T04:24:41,952 already explicitly excluding 'funvip.test_dataset.terrei.DB' via 2024-05-22T04:24:41,953 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-05-22T04:24:41,954 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-05-22T04:24:41,956 combination with a more fine grained `package-data` configuration. 2024-05-22T04:24:41,958 You can read more about "package data files" on setuptools documentation page: 2024-05-22T04:24:41,960 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-05-22T04:24:41,968 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-05-22T04:24:41,969 even if it does not contain any `.py` files. 2024-05-22T04:24:41,970 On the other hand, currently there is no concept of package data 2024-05-22T04:24:41,971 directory, all directories are treated like packages. 2024-05-22T04:24:41,971 ******************************************************************************** 2024-05-22T04:24:41,973 !! 2024-05-22T04:24:41,974 check.warn(importable) 2024-05-22T04:24:41,975 /tmp/pip-build-env-g7w591x0/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'funvip.test_dataset.terrei.Query' is absent from the `packages` configuration. 2024-05-22T04:24:41,976 !! 2024-05-22T04:24:41,978 ******************************************************************************** 2024-05-22T04:24:41,980 ############################ 2024-05-22T04:24:41,981 # Package would be ignored # 2024-05-22T04:24:41,983 ############################ 2024-05-22T04:24:41,986 Python recognizes 'funvip.test_dataset.terrei.Query' as an importable package[^1], 2024-05-22T04:24:41,988 but it is absent from setuptools' `packages` configuration. 2024-05-22T04:24:41,990 This leads to an ambiguous overall configuration. If you want to distribute this 2024-05-22T04:24:41,991 package, please make sure that 'funvip.test_dataset.terrei.Query' is explicitly added 2024-05-22T04:24:41,992 to the `packages` configuration field. 2024-05-22T04:24:41,994 Alternatively, you can also rely on setuptools' discovery methods 2024-05-22T04:24:41,996 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-05-22T04:24:41,997 instead of `find_packages(...)`/`find:`). 2024-05-22T04:24:41,999 You can read more about "package discovery" on setuptools documentation page: 2024-05-22T04:24:42,001 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-05-22T04:24:42,003 If you don't want 'funvip.test_dataset.terrei.Query' to be distributed and are 2024-05-22T04:24:42,004 already explicitly excluding 'funvip.test_dataset.terrei.Query' via 2024-05-22T04:24:42,005 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-05-22T04:24:42,006 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-05-22T04:24:42,007 combination with a more fine grained `package-data` configuration. 2024-05-22T04:24:42,009 You can read more about "package data files" on setuptools documentation page: 2024-05-22T04:24:42,011 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-05-22T04:24:42,015 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-05-22T04:24:42,016 even if it does not contain any `.py` files. 2024-05-22T04:24:42,017 On the other hand, currently there is no concept of package data 2024-05-22T04:24:42,018 directory, all directories are treated like packages. 2024-05-22T04:24:42,019 ******************************************************************************** 2024-05-22T04:24:42,022 !! 2024-05-22T04:24:42,023 check.warn(importable) 2024-05-22T04:24:42,024 copying funvip/data/genus_line.txt -> build/lib/funvip/data 2024-05-22T04:24:42,025 copying funvip/data/Option_manager.xlsx -> build/lib/funvip/data 2024-05-22T04:24:42,026 copying funvip/external/MAFFT_Windows.zip -> build/lib/funvip/external 2024-05-22T04:24:42,027 copying funvip/external/MAFFT_LICENSE -> build/lib/funvip/external 2024-05-22T04:24:42,029 creating build/lib/funvip/preset 2024-05-22T04:24:42,029 copying funvip/preset/fast.yaml -> build/lib/funvip/preset 2024-05-22T04:24:42,030 copying funvip/preset/accurate.yaml -> build/lib/funvip/preset 2024-05-22T04:24:42,031 creating build/lib/funvip/external/BLAST_Windows 2024-05-22T04:24:42,032 copying funvip/external/BLAST_Windows/Uninstall-ncbi-blast-2.12.0+.exe -> build/lib/funvip/external/BLAST_Windows 2024-05-22T04:24:42,033 creating build/lib/funvip/external/BLAST_Windows/bin 2024-05-22T04:24:42,035 copying funvip/external/BLAST_Windows/bin/blastn.exe -> build/lib/funvip/external/BLAST_Windows/bin 2024-05-22T04:24:42,035 copying funvip/external/BLAST_Windows/bin/cleanup-blastdb-volumes.py -> build/lib/funvip/external/BLAST_Windows/bin 2024-05-22T04:24:42,036 copying funvip/external/BLAST_Windows/bin/get_species_taxids.sh -> build/lib/funvip/external/BLAST_Windows/bin 2024-05-22T04:24:42,036 copying funvip/external/BLAST_Windows/bin/legacy_blast.pl -> build/lib/funvip/external/BLAST_Windows/bin 2024-05-22T04:24:42,037 copying funvip/external/BLAST_Windows/bin/makeblastdb.exe -> build/lib/funvip/external/BLAST_Windows/bin 2024-05-22T04:24:42,037 copying funvip/external/BLAST_Windows/bin/nghttp2.dll -> build/lib/funvip/external/BLAST_Windows/bin 2024-05-22T04:24:42,038 copying funvip/external/BLAST_Windows/bin/update_blastdb.pl -> build/lib/funvip/external/BLAST_Windows/bin 2024-05-22T04:24:42,039 creating build/lib/funvip/external/BLAST_Windows/doc 2024-05-22T04:24:42,039 copying funvip/external/BLAST_Windows/doc/README.txt -> build/lib/funvip/external/BLAST_Windows/doc 2024-05-22T04:24:42,040 creating build/lib/funvip/external/FastTree_Windows 2024-05-22T04:24:42,040 copying funvip/external/FastTree_Windows/FastTree.exe -> build/lib/funvip/external/FastTree_Windows 2024-05-22T04:24:42,041 creating build/lib/funvip/external/Gblocks_Windows_0.91b 2024-05-22T04:24:42,041 creating build/lib/funvip/external/Gblocks_Windows_0.91b/Gblocks_0.91b 2024-05-22T04:24:42,042 copying funvip/external/Gblocks_Windows_0.91b/Gblocks_0.91b/Gblocks.exe -> build/lib/funvip/external/Gblocks_Windows_0.91b/Gblocks_0.91b 2024-05-22T04:24:42,042 copying funvip/external/Gblocks_Windows_0.91b/Gblocks_0.91b/nad3.pir -> build/lib/funvip/external/Gblocks_Windows_0.91b/Gblocks_0.91b 2024-05-22T04:24:42,043 copying funvip/external/Gblocks_Windows_0.91b/Gblocks_0.91b/paths -> build/lib/funvip/external/Gblocks_Windows_0.91b/Gblocks_0.91b 2024-05-22T04:24:42,044 creating build/lib/funvip/external/Gblocks_Windows_0.91b/Gblocks_0.91b/Documentation 2024-05-22T04:24:42,044 copying funvip/external/Gblocks_Windows_0.91b/Gblocks_0.91b/Documentation/Gblocks_documentation.html -> build/lib/funvip/external/Gblocks_Windows_0.91b/Gblocks_0.91b/Documentation 2024-05-22T04:24:42,045 creating build/lib/funvip/external/Gblocks_Windows_0.91b/Gblocks_0.91b/more_alignments 2024-05-22T04:24:42,045 copying funvip/external/Gblocks_Windows_0.91b/Gblocks_0.91b/more_alignments/cox2.pir -> build/lib/funvip/external/Gblocks_Windows_0.91b/Gblocks_0.91b/more_alignments 2024-05-22T04:24:42,046 copying funvip/external/Gblocks_Windows_0.91b/Gblocks_0.91b/more_alignments/cytb.pir -> build/lib/funvip/external/Gblocks_Windows_0.91b/Gblocks_0.91b/more_alignments 2024-05-22T04:24:42,047 copying funvip/external/Gblocks_Windows_0.91b/Gblocks_0.91b/more_alignments/nad3.pir -> build/lib/funvip/external/Gblocks_Windows_0.91b/Gblocks_0.91b/more_alignments 2024-05-22T04:24:42,047 copying funvip/external/Gblocks_Windows_0.91b/Gblocks_0.91b/more_alignments/nad5.pir -> build/lib/funvip/external/Gblocks_Windows_0.91b/Gblocks_0.91b/more_alignments 2024-05-22T04:24:42,048 creating build/lib/funvip/external/RAxML_Windows 2024-05-22T04:24:42,048 copying funvip/external/RAxML_Windows/GPL-3.0.txt -> build/lib/funvip/external/RAxML_Windows 2024-05-22T04:24:42,049 copying funvip/external/RAxML_Windows/README -> build/lib/funvip/external/RAxML_Windows 2024-05-22T04:24:42,051 copying funvip/external/RAxML_Windows/raxmlHPC-PTHREADS-AVX2.exe -> build/lib/funvip/external/RAxML_Windows 2024-05-22T04:24:42,090 creating build/lib/funvip/external/iqtree 2024-05-22T04:24:42,091 copying funvip/external/iqtree/example.cf -> build/lib/funvip/external/iqtree 2024-05-22T04:24:42,153 copying funvip/external/iqtree/example.nex -> build/lib/funvip/external/iqtree 2024-05-22T04:24:42,158 copying funvip/external/iqtree/example.phy -> build/lib/funvip/external/iqtree 2024-05-22T04:24:42,166 copying funvip/external/iqtree/models.nex -> build/lib/funvip/external/iqtree 2024-05-22T04:24:42,174 creating build/lib/funvip/external/iqtree/bin 2024-05-22T04:24:42,177 copying funvip/external/iqtree/bin/iqtree2-click.exe -> build/lib/funvip/external/iqtree/bin 2024-05-22T04:24:42,426 copying funvip/external/iqtree/bin/iqtree2.exe -> build/lib/funvip/external/iqtree/bin 2024-05-22T04:24:42,718 copying funvip/external/iqtree/bin/libiomp5md.dll -> build/lib/funvip/external/iqtree/bin 2024-05-22T04:24:42,746 creating build/lib/funvip/external/mmseqs_Windows 2024-05-22T04:24:42,748 copying funvip/external/mmseqs_Windows/LICENSE.md -> build/lib/funvip/external/mmseqs_Windows 2024-05-22T04:24:42,756 copying funvip/external/mmseqs_Windows/README.md -> build/lib/funvip/external/mmseqs_Windows 2024-05-22T04:24:42,762 copying funvip/external/mmseqs_Windows/mmseqs.bat -> build/lib/funvip/external/mmseqs_Windows 2024-05-22T04:24:42,768 creating build/lib/funvip/external/mmseqs_Windows/bin 2024-05-22T04:24:42,770 copying funvip/external/mmseqs_Windows/bin/busybox.exe -> build/lib/funvip/external/mmseqs_Windows/bin 2024-05-22T04:24:42,789 copying funvip/external/mmseqs_Windows/bin/cygbz2-1.dll -> build/lib/funvip/external/mmseqs_Windows/bin 2024-05-22T04:24:42,796 copying funvip/external/mmseqs_Windows/bin/cyggcc_s-seh-1.dll -> build/lib/funvip/external/mmseqs_Windows/bin 2024-05-22T04:24:42,805 copying funvip/external/mmseqs_Windows/bin/cyggomp-1.dll -> build/lib/funvip/external/mmseqs_Windows/bin 2024-05-22T04:24:42,815 copying funvip/external/mmseqs_Windows/bin/cygstdc++-6.dll -> build/lib/funvip/external/mmseqs_Windows/bin 2024-05-22T04:24:42,865 copying funvip/external/mmseqs_Windows/bin/cygwin1.dll -> build/lib/funvip/external/mmseqs_Windows/bin 2024-05-22T04:24:42,952 copying funvip/external/mmseqs_Windows/bin/cygz.dll -> build/lib/funvip/external/mmseqs_Windows/bin 2024-05-22T04:24:42,961 copying funvip/external/mmseqs_Windows/bin/mmseqs.exe -> build/lib/funvip/external/mmseqs_Windows/bin 2024-05-22T04:24:43,231 creating build/lib/funvip/external/mmseqs_Windows/examples 2024-05-22T04:24:43,233 copying funvip/external/mmseqs_Windows/examples/QUERY.fasta -> build/lib/funvip/external/mmseqs_Windows/examples 2024-05-22T04:24:43,245 creating build/lib/funvip/external/mmseqs_Windows/matrices 2024-05-22T04:24:43,247 copying funvip/external/mmseqs_Windows/matrices/PAM10.out -> build/lib/funvip/external/mmseqs_Windows/matrices 2024-05-22T04:24:43,253 copying funvip/external/mmseqs_Windows/matrices/PAM100.out -> build/lib/funvip/external/mmseqs_Windows/matrices 2024-05-22T04:24:43,258 copying funvip/external/mmseqs_Windows/matrices/PAM110.out -> build/lib/funvip/external/mmseqs_Windows/matrices 2024-05-22T04:24:43,265 copying funvip/external/mmseqs_Windows/matrices/PAM120.out -> build/lib/funvip/external/mmseqs_Windows/matrices 2024-05-22T04:24:43,272 copying funvip/external/mmseqs_Windows/matrices/PAM130.out -> build/lib/funvip/external/mmseqs_Windows/matrices 2024-05-22T04:24:43,279 copying funvip/external/mmseqs_Windows/matrices/PAM140.out -> build/lib/funvip/external/mmseqs_Windows/matrices 2024-05-22T04:24:43,286 copying funvip/external/mmseqs_Windows/matrices/PAM150.out -> build/lib/funvip/external/mmseqs_Windows/matrices 2024-05-22T04:24:43,294 copying funvip/external/mmseqs_Windows/matrices/PAM160.out -> build/lib/funvip/external/mmseqs_Windows/matrices 2024-05-22T04:24:43,301 copying funvip/external/mmseqs_Windows/matrices/PAM170.out -> build/lib/funvip/external/mmseqs_Windows/matrices 2024-05-22T04:24:43,307 copying funvip/external/mmseqs_Windows/matrices/PAM180.out -> build/lib/funvip/external/mmseqs_Windows/matrices 2024-05-22T04:24:43,314 copying funvip/external/mmseqs_Windows/matrices/PAM190.out -> build/lib/funvip/external/mmseqs_Windows/matrices 2024-05-22T04:24:43,320 copying funvip/external/mmseqs_Windows/matrices/PAM20.out -> build/lib/funvip/external/mmseqs_Windows/matrices 2024-05-22T04:24:43,325 copying funvip/external/mmseqs_Windows/matrices/PAM30.out -> build/lib/funvip/external/mmseqs_Windows/matrices 2024-05-22T04:24:43,328 copying funvip/external/mmseqs_Windows/matrices/PAM40.out -> build/lib/funvip/external/mmseqs_Windows/matrices 2024-05-22T04:24:43,332 copying funvip/external/mmseqs_Windows/matrices/PAM50.out -> build/lib/funvip/external/mmseqs_Windows/matrices 2024-05-22T04:24:43,337 copying funvip/external/mmseqs_Windows/matrices/PAM60.out -> build/lib/funvip/external/mmseqs_Windows/matrices 2024-05-22T04:24:43,347 copying funvip/external/mmseqs_Windows/matrices/PAM70.out -> build/lib/funvip/external/mmseqs_Windows/matrices 2024-05-22T04:24:43,357 copying funvip/external/mmseqs_Windows/matrices/PAM80.out -> build/lib/funvip/external/mmseqs_Windows/matrices 2024-05-22T04:24:43,365 copying funvip/external/mmseqs_Windows/matrices/PAM90.out -> build/lib/funvip/external/mmseqs_Windows/matrices 2024-05-22T04:24:43,373 copying funvip/external/mmseqs_Windows/matrices/VTML10.out -> build/lib/funvip/external/mmseqs_Windows/matrices 2024-05-22T04:24:43,381 copying funvip/external/mmseqs_Windows/matrices/VTML120.out -> build/lib/funvip/external/mmseqs_Windows/matrices 2024-05-22T04:24:43,390 copying funvip/external/mmseqs_Windows/matrices/VTML160.out -> build/lib/funvip/external/mmseqs_Windows/matrices 2024-05-22T04:24:43,399 copying funvip/external/mmseqs_Windows/matrices/VTML20.out -> build/lib/funvip/external/mmseqs_Windows/matrices 2024-05-22T04:24:43,408 copying funvip/external/mmseqs_Windows/matrices/VTML40.out -> build/lib/funvip/external/mmseqs_Windows/matrices 2024-05-22T04:24:43,418 copying funvip/external/mmseqs_Windows/matrices/VTML80.out -> build/lib/funvip/external/mmseqs_Windows/matrices 2024-05-22T04:24:43,426 copying funvip/external/mmseqs_Windows/matrices/blosum100.out -> build/lib/funvip/external/mmseqs_Windows/matrices 2024-05-22T04:24:43,434 copying funvip/external/mmseqs_Windows/matrices/blosum30.out -> build/lib/funvip/external/mmseqs_Windows/matrices 2024-05-22T04:24:43,443 copying funvip/external/mmseqs_Windows/matrices/blosum35.out -> build/lib/funvip/external/mmseqs_Windows/matrices 2024-05-22T04:24:43,451 copying funvip/external/mmseqs_Windows/matrices/blosum40.out -> build/lib/funvip/external/mmseqs_Windows/matrices 2024-05-22T04:24:43,461 copying funvip/external/mmseqs_Windows/matrices/blosum45.out -> build/lib/funvip/external/mmseqs_Windows/matrices 2024-05-22T04:24:43,471 copying funvip/external/mmseqs_Windows/matrices/blosum50.out -> build/lib/funvip/external/mmseqs_Windows/matrices 2024-05-22T04:24:43,480 copying funvip/external/mmseqs_Windows/matrices/blosum55.out -> build/lib/funvip/external/mmseqs_Windows/matrices 2024-05-22T04:24:43,487 copying funvip/external/mmseqs_Windows/matrices/blosum60.out -> build/lib/funvip/external/mmseqs_Windows/matrices 2024-05-22T04:24:43,490 copying funvip/external/mmseqs_Windows/matrices/blosum62.out -> build/lib/funvip/external/mmseqs_Windows/matrices 2024-05-22T04:24:43,493 copying funvip/external/mmseqs_Windows/matrices/blosum65.out -> build/lib/funvip/external/mmseqs_Windows/matrices 2024-05-22T04:24:43,495 copying funvip/external/mmseqs_Windows/matrices/blosum70.out -> build/lib/funvip/external/mmseqs_Windows/matrices 2024-05-22T04:24:43,498 copying funvip/external/mmseqs_Windows/matrices/blosum75.out -> build/lib/funvip/external/mmseqs_Windows/matrices 2024-05-22T04:24:43,500 copying funvip/external/mmseqs_Windows/matrices/blosum80.out -> build/lib/funvip/external/mmseqs_Windows/matrices 2024-05-22T04:24:43,503 copying funvip/external/mmseqs_Windows/matrices/blosum85.out -> build/lib/funvip/external/mmseqs_Windows/matrices 2024-05-22T04:24:43,506 copying funvip/external/mmseqs_Windows/matrices/blosum90.out -> build/lib/funvip/external/mmseqs_Windows/matrices 2024-05-22T04:24:43,509 copying funvip/external/mmseqs_Windows/matrices/blosum95.out -> build/lib/funvip/external/mmseqs_Windows/matrices 2024-05-22T04:24:43,511 copying funvip/external/mmseqs_Windows/matrices/nucleotide.out -> build/lib/funvip/external/mmseqs_Windows/matrices 2024-05-22T04:24:43,514 creating build/lib/funvip/external/mmseqs_Windows/util 2024-05-22T04:24:43,515 copying funvip/external/mmseqs_Windows/util/bash-completion.sh -> build/lib/funvip/external/mmseqs_Windows/util 2024-05-22T04:24:43,517 creating build/lib/funvip/external/trimal.v1.4 2024-05-22T04:24:43,518 creating build/lib/funvip/external/trimal.v1.4/trimAl 2024-05-22T04:24:43,519 copying funvip/external/trimal.v1.4/trimAl/AUTHORS -> build/lib/funvip/external/trimal.v1.4/trimAl 2024-05-22T04:24:43,522 copying funvip/external/trimal.v1.4/trimAl/CHANGELOG -> build/lib/funvip/external/trimal.v1.4/trimAl 2024-05-22T04:24:43,526 copying funvip/external/trimal.v1.4/trimAl/LICENSE -> build/lib/funvip/external/trimal.v1.4/trimAl 2024-05-22T04:24:43,530 copying funvip/external/trimal.v1.4/trimAl/README -> build/lib/funvip/external/trimal.v1.4/trimAl 2024-05-22T04:24:43,532 creating build/lib/funvip/external/trimal.v1.4/trimAl/bin 2024-05-22T04:24:43,533 copying funvip/external/trimal.v1.4/trimAl/bin/libgcc_s_dw2-1.dll -> build/lib/funvip/external/trimal.v1.4/trimAl/bin 2024-05-22T04:24:43,562 copying funvip/external/trimal.v1.4/trimAl/bin/libstdc++-6.dll -> build/lib/funvip/external/trimal.v1.4/trimAl/bin 2024-05-22T04:24:43,609 copying funvip/external/trimal.v1.4/trimAl/bin/trimal.exe -> build/lib/funvip/external/trimal.v1.4/trimAl/bin 2024-05-22T04:24:43,621 creating build/lib/funvip/external/trimal.v1.4/trimAl/scripts 2024-05-22T04:24:43,622 copying funvip/external/trimal.v1.4/trimAl/scripts/check_codon_alignments.py -> build/lib/funvip/external/trimal.v1.4/trimAl/scripts 2024-05-22T04:24:43,625 copying funvip/external/trimal.v1.4/trimAl/scripts/compare_trimmed_msas.sh -> build/lib/funvip/external/trimal.v1.4/trimAl/scripts 2024-05-22T04:24:43,627 copying funvip/external/trimal.v1.4/trimAl/scripts/generateRandomAlignmentsUsingAsSeedRealAlignments.py -> build/lib/funvip/external/trimal.v1.4/trimAl/scripts 2024-05-22T04:24:43,629 copying funvip/external/trimal.v1.4/trimAl/scripts/generate_trimmed_msas.sh -> build/lib/funvip/external/trimal.v1.4/trimAl/scripts 2024-05-22T04:24:43,633 copying funvip/external/trimal.v1.4/trimAl/scripts/get_sequence_representative_from_alignment.py -> build/lib/funvip/external/trimal.v1.4/trimAl/scripts 2024-05-22T04:24:43,635 copying funvip/external/trimal.v1.4/trimAl/scripts/get_sequences_gaps_ratio.py -> build/lib/funvip/external/trimal.v1.4/trimAl/scripts 2024-05-22T04:24:43,637 copying funvip/external/trimal.v1.4/trimAl/scripts/remove_shorter_sequences.py -> build/lib/funvip/external/trimal.v1.4/trimAl/scripts 2024-05-22T04:24:43,639 copying funvip/external/trimal.v1.4/trimAl/scripts/selective_trimming_for_dNdS_analyses.based_neighbours.py -> build/lib/funvip/external/trimal.v1.4/trimAl/scripts 2024-05-22T04:24:43,641 copying funvip/external/trimal.v1.4/trimAl/scripts/set_manual_boundaries.py -> build/lib/funvip/external/trimal.v1.4/trimAl/scripts 2024-05-22T04:24:43,644 creating build/lib/funvip/external/trimal.v1.4/trimAl/source 2024-05-22T04:24:43,645 copying funvip/external/trimal.v1.4/trimAl/source/alignment.cpp -> build/lib/funvip/external/trimal.v1.4/trimAl/source 2024-05-22T04:24:43,649 copying funvip/external/trimal.v1.4/trimAl/source/alignment.h -> build/lib/funvip/external/trimal.v1.4/trimAl/source 2024-05-22T04:24:43,652 copying funvip/external/trimal.v1.4/trimAl/source/alignment.o -> build/lib/funvip/external/trimal.v1.4/trimAl/source 2024-05-22T04:24:43,657 copying funvip/external/trimal.v1.4/trimAl/source/autAlignment.cpp -> build/lib/funvip/external/trimal.v1.4/trimAl/source 2024-05-22T04:24:43,660 copying funvip/external/trimal.v1.4/trimAl/source/autAlignment.o -> build/lib/funvip/external/trimal.v1.4/trimAl/source 2024-05-22T04:24:43,663 copying funvip/external/trimal.v1.4/trimAl/source/compareFiles.cpp -> build/lib/funvip/external/trimal.v1.4/trimAl/source 2024-05-22T04:24:43,666 copying funvip/external/trimal.v1.4/trimAl/source/compareFiles.h -> build/lib/funvip/external/trimal.v1.4/trimAl/source 2024-05-22T04:24:43,668 copying funvip/external/trimal.v1.4/trimAl/source/compareFiles.o -> build/lib/funvip/external/trimal.v1.4/trimAl/source 2024-05-22T04:24:43,671 copying funvip/external/trimal.v1.4/trimAl/source/defines.h -> build/lib/funvip/external/trimal.v1.4/trimAl/source 2024-05-22T04:24:43,673 copying funvip/external/trimal.v1.4/trimAl/source/main.cpp -> build/lib/funvip/external/trimal.v1.4/trimAl/source 2024-05-22T04:24:43,678 copying funvip/external/trimal.v1.4/trimAl/source/makefile -> build/lib/funvip/external/trimal.v1.4/trimAl/source 2024-05-22T04:24:43,680 copying funvip/external/trimal.v1.4/trimAl/source/makefile.MacOS -> build/lib/funvip/external/trimal.v1.4/trimAl/source 2024-05-22T04:24:43,683 copying funvip/external/trimal.v1.4/trimAl/source/readAl.cpp -> build/lib/funvip/external/trimal.v1.4/trimAl/source 2024-05-22T04:24:43,685 copying funvip/external/trimal.v1.4/trimAl/source/readal.exe -> build/lib/funvip/external/trimal.v1.4/trimAl/source 2024-05-22T04:24:43,697 copying funvip/external/trimal.v1.4/trimAl/source/rwAlignment.cpp -> build/lib/funvip/external/trimal.v1.4/trimAl/source 2024-05-22T04:24:43,700 copying funvip/external/trimal.v1.4/trimAl/source/rwAlignment.o -> build/lib/funvip/external/trimal.v1.4/trimAl/source 2024-05-22T04:24:43,704 copying funvip/external/trimal.v1.4/trimAl/source/sequencesMatrix.cpp -> build/lib/funvip/external/trimal.v1.4/trimAl/source 2024-05-22T04:24:43,707 copying funvip/external/trimal.v1.4/trimAl/source/sequencesMatrix.h -> build/lib/funvip/external/trimal.v1.4/trimAl/source 2024-05-22T04:24:43,709 copying funvip/external/trimal.v1.4/trimAl/source/sequencesMatrix.o -> build/lib/funvip/external/trimal.v1.4/trimAl/source 2024-05-22T04:24:43,712 copying funvip/external/trimal.v1.4/trimAl/source/similarityMatrix.cpp -> build/lib/funvip/external/trimal.v1.4/trimAl/source 2024-05-22T04:24:43,715 copying funvip/external/trimal.v1.4/trimAl/source/similarityMatrix.h -> build/lib/funvip/external/trimal.v1.4/trimAl/source 2024-05-22T04:24:43,717 copying funvip/external/trimal.v1.4/trimAl/source/similarityMatrix.o -> build/lib/funvip/external/trimal.v1.4/trimAl/source 2024-05-22T04:24:43,720 copying funvip/external/trimal.v1.4/trimAl/source/statAl.cpp -> build/lib/funvip/external/trimal.v1.4/trimAl/source 2024-05-22T04:24:43,723 copying funvip/external/trimal.v1.4/trimAl/source/statal.exe -> build/lib/funvip/external/trimal.v1.4/trimAl/source 2024-05-22T04:24:43,730 copying funvip/external/trimal.v1.4/trimAl/source/statisticsConservation.cpp -> build/lib/funvip/external/trimal.v1.4/trimAl/source 2024-05-22T04:24:43,733 copying funvip/external/trimal.v1.4/trimAl/source/statisticsConservation.h -> build/lib/funvip/external/trimal.v1.4/trimAl/source 2024-05-22T04:24:43,735 copying funvip/external/trimal.v1.4/trimAl/source/statisticsConservation.o -> build/lib/funvip/external/trimal.v1.4/trimAl/source 2024-05-22T04:24:43,738 copying funvip/external/trimal.v1.4/trimAl/source/statisticsFiles.cpp -> build/lib/funvip/external/trimal.v1.4/trimAl/source 2024-05-22T04:24:43,741 copying funvip/external/trimal.v1.4/trimAl/source/statisticsFiles.h -> build/lib/funvip/external/trimal.v1.4/trimAl/source 2024-05-22T04:24:43,743 copying funvip/external/trimal.v1.4/trimAl/source/statisticsGaps.cpp -> build/lib/funvip/external/trimal.v1.4/trimAl/source 2024-05-22T04:24:43,747 copying funvip/external/trimal.v1.4/trimAl/source/statisticsGaps.h -> build/lib/funvip/external/trimal.v1.4/trimAl/source 2024-05-22T04:24:43,749 copying funvip/external/trimal.v1.4/trimAl/source/statisticsGaps.o -> build/lib/funvip/external/trimal.v1.4/trimAl/source 2024-05-22T04:24:43,753 copying funvip/external/trimal.v1.4/trimAl/source/utils.cpp -> build/lib/funvip/external/trimal.v1.4/trimAl/source 2024-05-22T04:24:43,756 copying funvip/external/trimal.v1.4/trimAl/source/utils.h -> build/lib/funvip/external/trimal.v1.4/trimAl/source 2024-05-22T04:24:43,759 copying funvip/external/trimal.v1.4/trimAl/source/utils.o -> build/lib/funvip/external/trimal.v1.4/trimAl/source 2024-05-22T04:24:43,762 copying funvip/external/trimal.v1.4/trimAl/source/values.h -> build/lib/funvip/external/trimal.v1.4/trimAl/source 2024-05-22T04:24:43,764 copying funvip/preset/.gitignore -> build/lib/funvip/preset 2024-05-22T04:24:43,767 copying funvip/src/.gitignore -> build/lib/funvip/src 2024-05-22T04:24:43,769 creating build/lib/funvip/src/__pycache__ 2024-05-22T04:24:43,770 copying funvip/src/__pycache__/CATV_pipe.cpython-310.pyc -> build/lib/funvip/src/__pycache__ 2024-05-22T04:24:43,781 copying funvip/src/__pycache__/CAT_V.cpython-310.pyc -> build/lib/funvip/src/__pycache__ 2024-05-22T04:24:43,784 copying funvip/src/__pycache__/CAT_V.cpython-39.pyc -> build/lib/funvip/src/__pycache__ 2024-05-22T04:24:43,787 copying funvip/src/__pycache__/CAT_V_pipe.cpython-39.pyc -> build/lib/funvip/src/__pycache__ 2024-05-22T04:24:43,790 copying funvip/src/__pycache__/__init__.cpython-310.pyc -> build/lib/funvip/src/__pycache__ 2024-05-22T04:24:43,792 copying funvip/src/__pycache__/__init__.cpython-39.pyc -> build/lib/funvip/src/__pycache__ 2024-05-22T04:24:43,795 copying funvip/src/__pycache__/align.cpython-310.pyc -> build/lib/funvip/src/__pycache__ 2024-05-22T04:24:43,798 copying funvip/src/__pycache__/cluster.cpython-39.pyc -> build/lib/funvip/src/__pycache__ 2024-05-22T04:24:43,800 copying funvip/src/__pycache__/dataset.cpython-39.pyc -> build/lib/funvip/src/__pycache__ 2024-05-22T04:24:43,803 copying funvip/src/__pycache__/ext.cpython-310.pyc -> build/lib/funvip/src/__pycache__ 2024-05-22T04:24:43,806 copying funvip/src/__pycache__/ext.cpython-39.pyc -> build/lib/funvip/src/__pycache__ 2024-05-22T04:24:43,809 copying funvip/src/__pycache__/hasher.cpython-39.pyc -> build/lib/funvip/src/__pycache__ 2024-05-22T04:24:43,812 copying funvip/src/__pycache__/initialize.cpython-39.pyc -> build/lib/funvip/src/__pycache__ 2024-05-22T04:24:43,814 copying funvip/src/__pycache__/io.cpython-310.pyc -> build/lib/funvip/src/__pycache__ 2024-05-22T04:24:43,817 copying funvip/src/__pycache__/io.cpython-39.pyc -> build/lib/funvip/src/__pycache__ 2024-05-22T04:24:43,820 copying funvip/src/__pycache__/logger.cpython-39.pyc -> build/lib/funvip/src/__pycache__ 2024-05-22T04:24:43,823 copying funvip/src/__pycache__/modeltest.cpython-39.pyc -> build/lib/funvip/src/__pycache__ 2024-05-22T04:24:43,825 copying funvip/src/__pycache__/multigene.cpython-39.pyc -> build/lib/funvip/src/__pycache__ 2024-05-22T04:24:43,827 copying funvip/src/__pycache__/ncbi.cpython-39.pyc -> build/lib/funvip/src/__pycache__ 2024-05-22T04:24:43,830 copying funvip/src/__pycache__/opt_generator.cpython-39.pyc -> build/lib/funvip/src/__pycache__ 2024-05-22T04:24:43,833 copying funvip/src/__pycache__/reporter.cpython-39.pyc -> build/lib/funvip/src/__pycache__ 2024-05-22T04:24:43,836 copying funvip/src/__pycache__/search.cpython-39.pyc -> build/lib/funvip/src/__pycache__ 2024-05-22T04:24:43,839 copying funvip/src/__pycache__/tool.cpython-39.pyc -> build/lib/funvip/src/__pycache__ 2024-05-22T04:24:43,842 copying funvip/src/__pycache__/validation.cpython-39.pyc -> build/lib/funvip/src/__pycache__ 2024-05-22T04:24:43,844 copying funvip/src/__pycache__/visualize.cpython-39.pyc -> build/lib/funvip/src/__pycache__ 2024-05-22T04:24:43,846 creating build/lib/funvip/src/templates 2024-05-22T04:24:43,847 copying funvip/src/templates/template.html -> build/lib/funvip/src/templates 2024-05-22T04:24:43,850 creating build/lib/funvip/test_dataset 2024-05-22T04:24:43,851 creating build/lib/funvip/test_dataset/penicillium 2024-05-22T04:24:43,852 copying funvip/test_dataset/penicillium/Options.config -> build/lib/funvip/test_dataset/penicillium 2024-05-22T04:24:43,855 copying funvip/test_dataset/penicillium/preset.yaml -> build/lib/funvip/test_dataset/penicillium 2024-05-22T04:24:43,857 creating build/lib/funvip/test_dataset/penicillium/DB 2024-05-22T04:24:43,859 copying funvip/test_dataset/penicillium/DB/DB_Penicillium.xlsx -> build/lib/funvip/test_dataset/penicillium/DB 2024-05-22T04:24:43,869 creating build/lib/funvip/test_dataset/penicillium/Query 2024-05-22T04:24:43,870 copying funvip/test_dataset/penicillium/Query/Query.xlsx -> build/lib/funvip/test_dataset/penicillium/Query 2024-05-22T04:24:43,874 creating build/lib/funvip/test_dataset/terrei 2024-05-22T04:24:43,875 copying funvip/test_dataset/terrei/preset.yaml -> build/lib/funvip/test_dataset/terrei 2024-05-22T04:24:43,878 creating build/lib/funvip/test_dataset/terrei/DB 2024-05-22T04:24:43,879 copying funvip/test_dataset/terrei/DB/FunVIP_Aspergillus_db.xlsx -> build/lib/funvip/test_dataset/terrei/DB 2024-05-22T04:24:43,882 creating build/lib/funvip/test_dataset/terrei/Query 2024-05-22T04:24:43,884 copying funvip/test_dataset/terrei/Query/FunVIP_Aspergillus_query.xlsx -> build/lib/funvip/test_dataset/terrei/Query 2024-05-22T04:24:43,897 installing to build/bdist.linux-armv7l/wheel 2024-05-22T04:24:43,897 running install 2024-05-22T04:24:43,922 running install_lib 2024-05-22T04:24:43,927 creating build/bdist.linux-armv7l 2024-05-22T04:24:43,928 creating build/bdist.linux-armv7l/wheel 2024-05-22T04:24:43,930 creating build/bdist.linux-armv7l/wheel/funvip 2024-05-22T04:24:43,931 copying build/lib/funvip/FunVIP_GUI.py -> build/bdist.linux-armv7l/wheel/funvip 2024-05-22T04:24:43,934 creating build/bdist.linux-armv7l/wheel/funvip/data 2024-05-22T04:24:43,935 copying build/lib/funvip/data/__init__.py -> build/bdist.linux-armv7l/wheel/funvip/data 2024-05-22T04:24:43,936 copying build/lib/funvip/data/genus_line.txt -> build/bdist.linux-armv7l/wheel/funvip/data 2024-05-22T04:24:43,939 copying build/lib/funvip/data/Option_manager.xlsx -> build/bdist.linux-armv7l/wheel/funvip/data 2024-05-22T04:24:43,942 creating build/bdist.linux-armv7l/wheel/funvip/external 2024-05-22T04:24:43,943 creating build/bdist.linux-armv7l/wheel/funvip/external/mmseqs_Windows 2024-05-22T04:24:43,945 creating build/bdist.linux-armv7l/wheel/funvip/external/mmseqs_Windows/util 2024-05-22T04:24:43,945 copying build/lib/funvip/external/mmseqs_Windows/util/bash-completion.sh -> build/bdist.linux-armv7l/wheel/funvip/external/mmseqs_Windows/util 2024-05-22T04:24:43,947 copying build/lib/funvip/external/mmseqs_Windows/LICENSE.md -> build/bdist.linux-armv7l/wheel/funvip/external/mmseqs_Windows 2024-05-22T04:24:43,950 copying build/lib/funvip/external/mmseqs_Windows/README.md -> build/bdist.linux-armv7l/wheel/funvip/external/mmseqs_Windows 2024-05-22T04:24:43,952 copying build/lib/funvip/external/mmseqs_Windows/mmseqs.bat -> build/bdist.linux-armv7l/wheel/funvip/external/mmseqs_Windows 2024-05-22T04:24:43,955 creating build/bdist.linux-armv7l/wheel/funvip/external/mmseqs_Windows/examples 2024-05-22T04:24:43,955 copying build/lib/funvip/external/mmseqs_Windows/examples/QUERY.fasta -> build/bdist.linux-armv7l/wheel/funvip/external/mmseqs_Windows/examples 2024-05-22T04:24:43,963 creating build/bdist.linux-armv7l/wheel/funvip/external/mmseqs_Windows/bin 2024-05-22T04:24:43,964 copying build/lib/funvip/external/mmseqs_Windows/bin/mmseqs.exe -> build/bdist.linux-armv7l/wheel/funvip/external/mmseqs_Windows/bin 2024-05-22T04:24:44,149 copying build/lib/funvip/external/mmseqs_Windows/bin/cygbz2-1.dll -> build/bdist.linux-armv7l/wheel/funvip/external/mmseqs_Windows/bin 2024-05-22T04:24:44,152 copying build/lib/funvip/external/mmseqs_Windows/bin/cyggcc_s-seh-1.dll -> build/bdist.linux-armv7l/wheel/funvip/external/mmseqs_Windows/bin 2024-05-22T04:24:44,156 copying build/lib/funvip/external/mmseqs_Windows/bin/cygwin1.dll -> build/bdist.linux-armv7l/wheel/funvip/external/mmseqs_Windows/bin 2024-05-22T04:24:44,215 copying build/lib/funvip/external/mmseqs_Windows/bin/cygstdc++-6.dll -> build/bdist.linux-armv7l/wheel/funvip/external/mmseqs_Windows/bin 2024-05-22T04:24:44,247 copying build/lib/funvip/external/mmseqs_Windows/bin/cyggomp-1.dll -> build/bdist.linux-armv7l/wheel/funvip/external/mmseqs_Windows/bin 2024-05-22T04:24:44,253 copying build/lib/funvip/external/mmseqs_Windows/bin/busybox.exe -> build/bdist.linux-armv7l/wheel/funvip/external/mmseqs_Windows/bin 2024-05-22T04:24:44,269 copying build/lib/funvip/external/mmseqs_Windows/bin/cygz.dll -> build/bdist.linux-armv7l/wheel/funvip/external/mmseqs_Windows/bin 2024-05-22T04:24:44,274 creating build/bdist.linux-armv7l/wheel/funvip/external/mmseqs_Windows/matrices 2024-05-22T04:24:44,275 copying build/lib/funvip/external/mmseqs_Windows/matrices/VTML80.out -> build/bdist.linux-armv7l/wheel/funvip/external/mmseqs_Windows/matrices 2024-05-22T04:24:44,277 copying build/lib/funvip/external/mmseqs_Windows/matrices/PAM120.out -> build/bdist.linux-armv7l/wheel/funvip/external/mmseqs_Windows/matrices 2024-05-22T04:24:44,279 copying build/lib/funvip/external/mmseqs_Windows/matrices/PAM60.out -> build/bdist.linux-armv7l/wheel/funvip/external/mmseqs_Windows/matrices 2024-05-22T04:24:44,281 copying build/lib/funvip/external/mmseqs_Windows/matrices/PAM50.out -> build/bdist.linux-armv7l/wheel/funvip/external/mmseqs_Windows/matrices 2024-05-22T04:24:44,283 copying build/lib/funvip/external/mmseqs_Windows/matrices/blosum65.out -> build/bdist.linux-armv7l/wheel/funvip/external/mmseqs_Windows/matrices 2024-05-22T04:24:44,285 copying build/lib/funvip/external/mmseqs_Windows/matrices/PAM70.out -> build/bdist.linux-armv7l/wheel/funvip/external/mmseqs_Windows/matrices 2024-05-22T04:24:44,287 copying build/lib/funvip/external/mmseqs_Windows/matrices/VTML10.out -> build/bdist.linux-armv7l/wheel/funvip/external/mmseqs_Windows/matrices 2024-05-22T04:24:44,289 copying build/lib/funvip/external/mmseqs_Windows/matrices/PAM90.out -> build/bdist.linux-armv7l/wheel/funvip/external/mmseqs_Windows/matrices 2024-05-22T04:24:44,291 copying build/lib/funvip/external/mmseqs_Windows/matrices/PAM80.out -> build/bdist.linux-armv7l/wheel/funvip/external/mmseqs_Windows/matrices 2024-05-22T04:24:44,293 copying build/lib/funvip/external/mmseqs_Windows/matrices/VTML20.out -> build/bdist.linux-armv7l/wheel/funvip/external/mmseqs_Windows/matrices 2024-05-22T04:24:44,294 copying build/lib/funvip/external/mmseqs_Windows/matrices/PAM10.out -> build/bdist.linux-armv7l/wheel/funvip/external/mmseqs_Windows/matrices 2024-05-22T04:24:44,296 copying build/lib/funvip/external/mmseqs_Windows/matrices/blosum90.out -> build/bdist.linux-armv7l/wheel/funvip/external/mmseqs_Windows/matrices 2024-05-22T04:24:44,299 copying build/lib/funvip/external/mmseqs_Windows/matrices/PAM190.out -> build/bdist.linux-armv7l/wheel/funvip/external/mmseqs_Windows/matrices 2024-05-22T04:24:44,300 copying build/lib/funvip/external/mmseqs_Windows/matrices/blosum85.out -> build/bdist.linux-armv7l/wheel/funvip/external/mmseqs_Windows/matrices 2024-05-22T04:24:44,302 copying build/lib/funvip/external/mmseqs_Windows/matrices/blosum40.out -> build/bdist.linux-armv7l/wheel/funvip/external/mmseqs_Windows/matrices 2024-05-22T04:24:44,304 copying build/lib/funvip/external/mmseqs_Windows/matrices/blosum70.out -> build/bdist.linux-armv7l/wheel/funvip/external/mmseqs_Windows/matrices 2024-05-22T04:24:44,306 copying build/lib/funvip/external/mmseqs_Windows/matrices/blosum62.out -> build/bdist.linux-armv7l/wheel/funvip/external/mmseqs_Windows/matrices 2024-05-22T04:24:44,307 copying build/lib/funvip/external/mmseqs_Windows/matrices/blosum55.out -> build/bdist.linux-armv7l/wheel/funvip/external/mmseqs_Windows/matrices 2024-05-22T04:24:44,309 copying build/lib/funvip/external/mmseqs_Windows/matrices/PAM180.out -> build/bdist.linux-armv7l/wheel/funvip/external/mmseqs_Windows/matrices 2024-05-22T04:24:44,311 copying build/lib/funvip/external/mmseqs_Windows/matrices/blosum95.out -> build/bdist.linux-armv7l/wheel/funvip/external/mmseqs_Windows/matrices 2024-05-22T04:24:44,313 copying build/lib/funvip/external/mmseqs_Windows/matrices/blosum30.out -> build/bdist.linux-armv7l/wheel/funvip/external/mmseqs_Windows/matrices 2024-05-22T04:24:44,315 copying build/lib/funvip/external/mmseqs_Windows/matrices/blosum45.out -> build/bdist.linux-armv7l/wheel/funvip/external/mmseqs_Windows/matrices 2024-05-22T04:24:44,317 copying build/lib/funvip/external/mmseqs_Windows/matrices/PAM20.out -> build/bdist.linux-armv7l/wheel/funvip/external/mmseqs_Windows/matrices 2024-05-22T04:24:44,319 copying build/lib/funvip/external/mmseqs_Windows/matrices/PAM140.out -> build/bdist.linux-armv7l/wheel/funvip/external/mmseqs_Windows/matrices 2024-05-22T04:24:44,321 copying build/lib/funvip/external/mmseqs_Windows/matrices/PAM110.out -> build/bdist.linux-armv7l/wheel/funvip/external/mmseqs_Windows/matrices 2024-05-22T04:24:44,323 copying build/lib/funvip/external/mmseqs_Windows/matrices/PAM160.out -> build/bdist.linux-armv7l/wheel/funvip/external/mmseqs_Windows/matrices 2024-05-22T04:24:44,325 copying build/lib/funvip/external/mmseqs_Windows/matrices/blosum60.out -> build/bdist.linux-armv7l/wheel/funvip/external/mmseqs_Windows/matrices 2024-05-22T04:24:44,327 copying build/lib/funvip/external/mmseqs_Windows/matrices/blosum50.out -> build/bdist.linux-armv7l/wheel/funvip/external/mmseqs_Windows/matrices 2024-05-22T04:24:44,329 copying build/lib/funvip/external/mmseqs_Windows/matrices/blosum35.out -> build/bdist.linux-armv7l/wheel/funvip/external/mmseqs_Windows/matrices 2024-05-22T04:24:44,331 copying build/lib/funvip/external/mmseqs_Windows/matrices/PAM170.out -> build/bdist.linux-armv7l/wheel/funvip/external/mmseqs_Windows/matrices 2024-05-22T04:24:44,333 copying build/lib/funvip/external/mmseqs_Windows/matrices/PAM30.out -> build/bdist.linux-armv7l/wheel/funvip/external/mmseqs_Windows/matrices 2024-05-22T04:24:44,335 copying build/lib/funvip/external/mmseqs_Windows/matrices/nucleotide.out -> build/bdist.linux-armv7l/wheel/funvip/external/mmseqs_Windows/matrices 2024-05-22T04:24:44,336 copying build/lib/funvip/external/mmseqs_Windows/matrices/PAM40.out -> build/bdist.linux-armv7l/wheel/funvip/external/mmseqs_Windows/matrices 2024-05-22T04:24:44,338 copying build/lib/funvip/external/mmseqs_Windows/matrices/VTML160.out -> build/bdist.linux-armv7l/wheel/funvip/external/mmseqs_Windows/matrices 2024-05-22T04:24:44,340 copying build/lib/funvip/external/mmseqs_Windows/matrices/blosum100.out -> build/bdist.linux-armv7l/wheel/funvip/external/mmseqs_Windows/matrices 2024-05-22T04:24:44,342 copying build/lib/funvip/external/mmseqs_Windows/matrices/blosum75.out -> build/bdist.linux-armv7l/wheel/funvip/external/mmseqs_Windows/matrices 2024-05-22T04:24:44,344 copying build/lib/funvip/external/mmseqs_Windows/matrices/VTML120.out -> build/bdist.linux-armv7l/wheel/funvip/external/mmseqs_Windows/matrices 2024-05-22T04:24:44,345 copying build/lib/funvip/external/mmseqs_Windows/matrices/blosum80.out -> build/bdist.linux-armv7l/wheel/funvip/external/mmseqs_Windows/matrices 2024-05-22T04:24:44,347 copying build/lib/funvip/external/mmseqs_Windows/matrices/PAM150.out -> build/bdist.linux-armv7l/wheel/funvip/external/mmseqs_Windows/matrices 2024-05-22T04:24:44,349 copying build/lib/funvip/external/mmseqs_Windows/matrices/PAM100.out -> build/bdist.linux-armv7l/wheel/funvip/external/mmseqs_Windows/matrices 2024-05-22T04:24:44,351 copying build/lib/funvip/external/mmseqs_Windows/matrices/PAM130.out -> build/bdist.linux-armv7l/wheel/funvip/external/mmseqs_Windows/matrices 2024-05-22T04:24:44,352 copying build/lib/funvip/external/mmseqs_Windows/matrices/VTML40.out -> build/bdist.linux-armv7l/wheel/funvip/external/mmseqs_Windows/matrices 2024-05-22T04:24:44,355 creating build/bdist.linux-armv7l/wheel/funvip/external/RAxML_Windows 2024-05-22T04:24:44,356 copying build/lib/funvip/external/RAxML_Windows/GPL-3.0.txt -> build/bdist.linux-armv7l/wheel/funvip/external/RAxML_Windows 2024-05-22T04:24:44,359 copying build/lib/funvip/external/RAxML_Windows/raxmlHPC-PTHREADS-AVX2.exe -> build/bdist.linux-armv7l/wheel/funvip/external/RAxML_Windows 2024-05-22T04:24:44,389 copying build/lib/funvip/external/RAxML_Windows/README -> build/bdist.linux-armv7l/wheel/funvip/external/RAxML_Windows 2024-05-22T04:24:44,391 creating build/bdist.linux-armv7l/wheel/funvip/external/trimal.v1.4 2024-05-22T04:24:44,393 creating build/bdist.linux-armv7l/wheel/funvip/external/trimal.v1.4/trimAl 2024-05-22T04:24:44,395 creating build/bdist.linux-armv7l/wheel/funvip/external/trimal.v1.4/trimAl/scripts 2024-05-22T04:24:44,396 copying build/lib/funvip/external/trimal.v1.4/trimAl/scripts/generateRandomAlignmentsUsingAsSeedRealAlignments.py -> build/bdist.linux-armv7l/wheel/funvip/external/trimal.v1.4/trimAl/scripts 2024-05-22T04:24:44,398 copying build/lib/funvip/external/trimal.v1.4/trimAl/scripts/compare_trimmed_msas.sh -> build/bdist.linux-armv7l/wheel/funvip/external/trimal.v1.4/trimAl/scripts 2024-05-22T04:24:44,400 copying build/lib/funvip/external/trimal.v1.4/trimAl/scripts/remove_shorter_sequences.py -> build/bdist.linux-armv7l/wheel/funvip/external/trimal.v1.4/trimAl/scripts 2024-05-22T04:24:44,402 copying build/lib/funvip/external/trimal.v1.4/trimAl/scripts/get_sequences_gaps_ratio.py -> build/bdist.linux-armv7l/wheel/funvip/external/trimal.v1.4/trimAl/scripts 2024-05-22T04:24:44,404 copying build/lib/funvip/external/trimal.v1.4/trimAl/scripts/check_codon_alignments.py -> build/bdist.linux-armv7l/wheel/funvip/external/trimal.v1.4/trimAl/scripts 2024-05-22T04:24:44,407 copying build/lib/funvip/external/trimal.v1.4/trimAl/scripts/set_manual_boundaries.py -> build/bdist.linux-armv7l/wheel/funvip/external/trimal.v1.4/trimAl/scripts 2024-05-22T04:24:44,410 copying build/lib/funvip/external/trimal.v1.4/trimAl/scripts/generate_trimmed_msas.sh -> build/bdist.linux-armv7l/wheel/funvip/external/trimal.v1.4/trimAl/scripts 2024-05-22T04:24:44,413 copying build/lib/funvip/external/trimal.v1.4/trimAl/scripts/selective_trimming_for_dNdS_analyses.based_neighbours.py -> build/bdist.linux-armv7l/wheel/funvip/external/trimal.v1.4/trimAl/scripts 2024-05-22T04:24:44,416 copying build/lib/funvip/external/trimal.v1.4/trimAl/scripts/get_sequence_representative_from_alignment.py -> build/bdist.linux-armv7l/wheel/funvip/external/trimal.v1.4/trimAl/scripts 2024-05-22T04:24:44,418 copying build/lib/funvip/external/trimal.v1.4/trimAl/LICENSE -> build/bdist.linux-armv7l/wheel/funvip/external/trimal.v1.4/trimAl 2024-05-22T04:24:44,421 copying build/lib/funvip/external/trimal.v1.4/trimAl/CHANGELOG -> build/bdist.linux-armv7l/wheel/funvip/external/trimal.v1.4/trimAl 2024-05-22T04:24:44,425 creating build/bdist.linux-armv7l/wheel/funvip/external/trimal.v1.4/trimAl/source 2024-05-22T04:24:44,426 copying build/lib/funvip/external/trimal.v1.4/trimAl/source/statAl.cpp -> build/bdist.linux-armv7l/wheel/funvip/external/trimal.v1.4/trimAl/source 2024-05-22T04:24:44,429 copying build/lib/funvip/external/trimal.v1.4/trimAl/source/similarityMatrix.h -> build/bdist.linux-armv7l/wheel/funvip/external/trimal.v1.4/trimAl/source 2024-05-22T04:24:44,431 copying build/lib/funvip/external/trimal.v1.4/trimAl/source/statisticsFiles.cpp -> build/bdist.linux-armv7l/wheel/funvip/external/trimal.v1.4/trimAl/source 2024-05-22T04:24:44,434 copying build/lib/funvip/external/trimal.v1.4/trimAl/source/readal.exe -> build/bdist.linux-armv7l/wheel/funvip/external/trimal.v1.4/trimAl/source 2024-05-22T04:24:44,443 copying build/lib/funvip/external/trimal.v1.4/trimAl/source/rwAlignment.o -> build/bdist.linux-armv7l/wheel/funvip/external/trimal.v1.4/trimAl/source 2024-05-22T04:24:44,447 copying build/lib/funvip/external/trimal.v1.4/trimAl/source/readAl.cpp -> build/bdist.linux-armv7l/wheel/funvip/external/trimal.v1.4/trimAl/source 2024-05-22T04:24:44,450 copying build/lib/funvip/external/trimal.v1.4/trimAl/source/sequencesMatrix.o -> build/bdist.linux-armv7l/wheel/funvip/external/trimal.v1.4/trimAl/source 2024-05-22T04:24:44,453 copying build/lib/funvip/external/trimal.v1.4/trimAl/source/statisticsFiles.h -> build/bdist.linux-armv7l/wheel/funvip/external/trimal.v1.4/trimAl/source 2024-05-22T04:24:44,455 copying build/lib/funvip/external/trimal.v1.4/trimAl/source/compareFiles.h -> build/bdist.linux-armv7l/wheel/funvip/external/trimal.v1.4/trimAl/source 2024-05-22T04:24:44,457 copying build/lib/funvip/external/trimal.v1.4/trimAl/source/similarityMatrix.o -> build/bdist.linux-armv7l/wheel/funvip/external/trimal.v1.4/trimAl/source 2024-05-22T04:24:44,460 copying build/lib/funvip/external/trimal.v1.4/trimAl/source/alignment.h -> build/bdist.linux-armv7l/wheel/funvip/external/trimal.v1.4/trimAl/source 2024-05-22T04:24:44,463 copying build/lib/funvip/external/trimal.v1.4/trimAl/source/autAlignment.o -> build/bdist.linux-armv7l/wheel/funvip/external/trimal.v1.4/trimAl/source 2024-05-22T04:24:44,466 copying build/lib/funvip/external/trimal.v1.4/trimAl/source/utils.cpp -> build/bdist.linux-armv7l/wheel/funvip/external/trimal.v1.4/trimAl/source 2024-05-22T04:24:44,469 copying build/lib/funvip/external/trimal.v1.4/trimAl/source/autAlignment.cpp -> build/bdist.linux-armv7l/wheel/funvip/external/trimal.v1.4/trimAl/source 2024-05-22T04:24:44,472 copying build/lib/funvip/external/trimal.v1.4/trimAl/source/sequencesMatrix.cpp -> build/bdist.linux-armv7l/wheel/funvip/external/trimal.v1.4/trimAl/source 2024-05-22T04:24:44,474 copying build/lib/funvip/external/trimal.v1.4/trimAl/source/main.cpp -> build/bdist.linux-armv7l/wheel/funvip/external/trimal.v1.4/trimAl/source 2024-05-22T04:24:44,479 copying build/lib/funvip/external/trimal.v1.4/trimAl/source/statisticsGaps.h -> build/bdist.linux-armv7l/wheel/funvip/external/trimal.v1.4/trimAl/source 2024-05-22T04:24:44,481 copying build/lib/funvip/external/trimal.v1.4/trimAl/source/alignment.cpp -> build/bdist.linux-armv7l/wheel/funvip/external/trimal.v1.4/trimAl/source 2024-05-22T04:24:44,485 copying build/lib/funvip/external/trimal.v1.4/trimAl/source/utils.o -> build/bdist.linux-armv7l/wheel/funvip/external/trimal.v1.4/trimAl/source 2024-05-22T04:24:44,488 copying build/lib/funvip/external/trimal.v1.4/trimAl/source/sequencesMatrix.h -> build/bdist.linux-armv7l/wheel/funvip/external/trimal.v1.4/trimAl/source 2024-05-22T04:24:44,490 copying build/lib/funvip/external/trimal.v1.4/trimAl/source/compareFiles.o -> build/bdist.linux-armv7l/wheel/funvip/external/trimal.v1.4/trimAl/source 2024-05-22T04:24:44,492 copying build/lib/funvip/external/trimal.v1.4/trimAl/source/statisticsGaps.o -> build/bdist.linux-armv7l/wheel/funvip/external/trimal.v1.4/trimAl/source 2024-05-22T04:24:44,494 copying build/lib/funvip/external/trimal.v1.4/trimAl/source/statisticsGaps.cpp -> build/bdist.linux-armv7l/wheel/funvip/external/trimal.v1.4/trimAl/source 2024-05-22T04:24:44,497 copying build/lib/funvip/external/trimal.v1.4/trimAl/source/statisticsConservation.h -> build/bdist.linux-armv7l/wheel/funvip/external/trimal.v1.4/trimAl/source 2024-05-22T04:24:44,499 copying build/lib/funvip/external/trimal.v1.4/trimAl/source/defines.h -> build/bdist.linux-armv7l/wheel/funvip/external/trimal.v1.4/trimAl/source 2024-05-22T04:24:44,501 copying build/lib/funvip/external/trimal.v1.4/trimAl/source/statisticsConservation.cpp -> build/bdist.linux-armv7l/wheel/funvip/external/trimal.v1.4/trimAl/source 2024-05-22T04:24:44,503 copying build/lib/funvip/external/trimal.v1.4/trimAl/source/statisticsConservation.o -> build/bdist.linux-armv7l/wheel/funvip/external/trimal.v1.4/trimAl/source 2024-05-22T04:24:44,506 copying build/lib/funvip/external/trimal.v1.4/trimAl/source/makefile.MacOS -> build/bdist.linux-armv7l/wheel/funvip/external/trimal.v1.4/trimAl/source 2024-05-22T04:24:44,508 copying build/lib/funvip/external/trimal.v1.4/trimAl/source/utils.h -> build/bdist.linux-armv7l/wheel/funvip/external/trimal.v1.4/trimAl/source 2024-05-22T04:24:44,510 copying build/lib/funvip/external/trimal.v1.4/trimAl/source/rwAlignment.cpp -> build/bdist.linux-armv7l/wheel/funvip/external/trimal.v1.4/trimAl/source 2024-05-22T04:24:44,513 copying build/lib/funvip/external/trimal.v1.4/trimAl/source/compareFiles.cpp -> build/bdist.linux-armv7l/wheel/funvip/external/trimal.v1.4/trimAl/source 2024-05-22T04:24:44,516 copying build/lib/funvip/external/trimal.v1.4/trimAl/source/values.h -> build/bdist.linux-armv7l/wheel/funvip/external/trimal.v1.4/trimAl/source 2024-05-22T04:24:44,518 copying build/lib/funvip/external/trimal.v1.4/trimAl/source/makefile -> build/bdist.linux-armv7l/wheel/funvip/external/trimal.v1.4/trimAl/source 2024-05-22T04:24:44,520 copying build/lib/funvip/external/trimal.v1.4/trimAl/source/similarityMatrix.cpp -> build/bdist.linux-armv7l/wheel/funvip/external/trimal.v1.4/trimAl/source 2024-05-22T04:24:44,522 copying build/lib/funvip/external/trimal.v1.4/trimAl/source/statal.exe -> build/bdist.linux-armv7l/wheel/funvip/external/trimal.v1.4/trimAl/source 2024-05-22T04:24:44,530 copying build/lib/funvip/external/trimal.v1.4/trimAl/source/alignment.o -> build/bdist.linux-armv7l/wheel/funvip/external/trimal.v1.4/trimAl/source 2024-05-22T04:24:44,535 copying build/lib/funvip/external/trimal.v1.4/trimAl/AUTHORS -> build/bdist.linux-armv7l/wheel/funvip/external/trimal.v1.4/trimAl 2024-05-22T04:24:44,536 copying build/lib/funvip/external/trimal.v1.4/trimAl/README -> build/bdist.linux-armv7l/wheel/funvip/external/trimal.v1.4/trimAl 2024-05-22T04:24:44,539 creating build/bdist.linux-armv7l/wheel/funvip/external/trimal.v1.4/trimAl/bin 2024-05-22T04:24:44,540 copying build/lib/funvip/external/trimal.v1.4/trimAl/bin/trimal.exe -> build/bdist.linux-armv7l/wheel/funvip/external/trimal.v1.4/trimAl/bin 2024-05-22T04:24:44,548 copying build/lib/funvip/external/trimal.v1.4/trimAl/bin/libgcc_s_dw2-1.dll -> build/bdist.linux-armv7l/wheel/funvip/external/trimal.v1.4/trimAl/bin 2024-05-22T04:24:44,571 copying build/lib/funvip/external/trimal.v1.4/trimAl/bin/libstdc++-6.dll -> build/bdist.linux-armv7l/wheel/funvip/external/trimal.v1.4/trimAl/bin 2024-05-22T04:24:44,595 creating build/bdist.linux-armv7l/wheel/funvip/external/FastTree_Windows 2024-05-22T04:24:44,597 copying build/lib/funvip/external/FastTree_Windows/FastTree.exe -> build/bdist.linux-armv7l/wheel/funvip/external/FastTree_Windows 2024-05-22T04:24:44,605 creating build/bdist.linux-armv7l/wheel/funvip/external/iqtree 2024-05-22T04:24:44,606 copying build/lib/funvip/external/iqtree/models.nex -> build/bdist.linux-armv7l/wheel/funvip/external/iqtree 2024-05-22T04:24:44,610 copying build/lib/funvip/external/iqtree/example.nex -> build/bdist.linux-armv7l/wheel/funvip/external/iqtree 2024-05-22T04:24:44,612 copying build/lib/funvip/external/iqtree/example.phy -> build/bdist.linux-armv7l/wheel/funvip/external/iqtree 2024-05-22T04:24:44,614 copying build/lib/funvip/external/iqtree/example.cf -> build/bdist.linux-armv7l/wheel/funvip/external/iqtree 2024-05-22T04:24:44,937 creating build/bdist.linux-armv7l/wheel/funvip/external/iqtree/bin 2024-05-22T04:24:44,938 copying build/lib/funvip/external/iqtree/bin/iqtree2.exe -> build/bdist.linux-armv7l/wheel/funvip/external/iqtree/bin 2024-05-22T04:24:45,157 copying build/lib/funvip/external/iqtree/bin/iqtree2-click.exe -> build/bdist.linux-armv7l/wheel/funvip/external/iqtree/bin 2024-05-22T04:24:45,337 copying build/lib/funvip/external/iqtree/bin/libiomp5md.dll -> build/bdist.linux-armv7l/wheel/funvip/external/iqtree/bin 2024-05-22T04:24:45,359 copying build/lib/funvip/external/__init__.py -> build/bdist.linux-armv7l/wheel/funvip/external 2024-05-22T04:24:45,361 copying build/lib/funvip/external/MAFFT_Windows.zip -> build/bdist.linux-armv7l/wheel/funvip/external 2024-05-22T04:24:45,748 creating build/bdist.linux-armv7l/wheel/funvip/external/BLAST_Windows 2024-05-22T04:24:45,749 copying build/lib/funvip/external/BLAST_Windows/Uninstall-ncbi-blast-2.12.0+.exe -> build/bdist.linux-armv7l/wheel/funvip/external/BLAST_Windows 2024-05-22T04:24:45,753 creating build/bdist.linux-armv7l/wheel/funvip/external/BLAST_Windows/bin 2024-05-22T04:24:45,754 copying build/lib/funvip/external/BLAST_Windows/bin/update_blastdb.pl -> build/bdist.linux-armv7l/wheel/funvip/external/BLAST_Windows/bin 2024-05-22T04:24:45,757 copying build/lib/funvip/external/BLAST_Windows/bin/get_species_taxids.sh -> build/bdist.linux-armv7l/wheel/funvip/external/BLAST_Windows/bin 2024-05-22T04:24:45,759 copying build/lib/funvip/external/BLAST_Windows/bin/nghttp2.dll -> build/bdist.linux-armv7l/wheel/funvip/external/BLAST_Windows/bin 2024-05-22T04:24:45,764 copying build/lib/funvip/external/BLAST_Windows/bin/makeblastdb.exe -> build/bdist.linux-armv7l/wheel/funvip/external/BLAST_Windows/bin 2024-05-22T04:24:45,967 copying build/lib/funvip/external/BLAST_Windows/bin/legacy_blast.pl -> build/bdist.linux-armv7l/wheel/funvip/external/BLAST_Windows/bin 2024-05-22T04:24:45,971 copying build/lib/funvip/external/BLAST_Windows/bin/blastn.exe -> build/bdist.linux-armv7l/wheel/funvip/external/BLAST_Windows/bin 2024-05-22T04:24:46,261 copying build/lib/funvip/external/BLAST_Windows/bin/cleanup-blastdb-volumes.py -> build/bdist.linux-armv7l/wheel/funvip/external/BLAST_Windows/bin 2024-05-22T04:24:46,263 creating build/bdist.linux-armv7l/wheel/funvip/external/BLAST_Windows/doc 2024-05-22T04:24:46,264 copying build/lib/funvip/external/BLAST_Windows/doc/README.txt -> build/bdist.linux-armv7l/wheel/funvip/external/BLAST_Windows/doc 2024-05-22T04:24:46,267 creating build/bdist.linux-armv7l/wheel/funvip/external/Gblocks_Windows_0.91b 2024-05-22T04:24:46,268 creating build/bdist.linux-armv7l/wheel/funvip/external/Gblocks_Windows_0.91b/Gblocks_0.91b 2024-05-22T04:24:46,270 creating build/bdist.linux-armv7l/wheel/funvip/external/Gblocks_Windows_0.91b/Gblocks_0.91b/more_alignments 2024-05-22T04:24:46,271 copying build/lib/funvip/external/Gblocks_Windows_0.91b/Gblocks_0.91b/more_alignments/nad5.pir -> build/bdist.linux-armv7l/wheel/funvip/external/Gblocks_Windows_0.91b/Gblocks_0.91b/more_alignments 2024-05-22T04:24:46,273 copying build/lib/funvip/external/Gblocks_Windows_0.91b/Gblocks_0.91b/more_alignments/cox2.pir -> build/bdist.linux-armv7l/wheel/funvip/external/Gblocks_Windows_0.91b/Gblocks_0.91b/more_alignments 2024-05-22T04:24:46,276 copying build/lib/funvip/external/Gblocks_Windows_0.91b/Gblocks_0.91b/more_alignments/cytb.pir -> build/bdist.linux-armv7l/wheel/funvip/external/Gblocks_Windows_0.91b/Gblocks_0.91b/more_alignments 2024-05-22T04:24:46,278 copying build/lib/funvip/external/Gblocks_Windows_0.91b/Gblocks_0.91b/more_alignments/nad3.pir -> build/bdist.linux-armv7l/wheel/funvip/external/Gblocks_Windows_0.91b/Gblocks_0.91b/more_alignments 2024-05-22T04:24:46,280 creating build/bdist.linux-armv7l/wheel/funvip/external/Gblocks_Windows_0.91b/Gblocks_0.91b/Documentation 2024-05-22T04:24:46,281 copying build/lib/funvip/external/Gblocks_Windows_0.91b/Gblocks_0.91b/Documentation/Gblocks_documentation.html -> build/bdist.linux-armv7l/wheel/funvip/external/Gblocks_Windows_0.91b/Gblocks_0.91b/Documentation 2024-05-22T04:24:46,284 copying build/lib/funvip/external/Gblocks_Windows_0.91b/Gblocks_0.91b/paths -> build/bdist.linux-armv7l/wheel/funvip/external/Gblocks_Windows_0.91b/Gblocks_0.91b 2024-05-22T04:24:46,286 copying build/lib/funvip/external/Gblocks_Windows_0.91b/Gblocks_0.91b/nad3.pir -> build/bdist.linux-armv7l/wheel/funvip/external/Gblocks_Windows_0.91b/Gblocks_0.91b 2024-05-22T04:24:46,288 copying build/lib/funvip/external/Gblocks_Windows_0.91b/Gblocks_0.91b/Gblocks.exe -> build/bdist.linux-armv7l/wheel/funvip/external/Gblocks_Windows_0.91b/Gblocks_0.91b 2024-05-22T04:24:46,294 copying build/lib/funvip/external/MAFFT_LICENSE -> build/bdist.linux-armv7l/wheel/funvip/external 2024-05-22T04:24:46,297 copying build/lib/funvip/__init__.py -> build/bdist.linux-armv7l/wheel/funvip 2024-05-22T04:24:46,299 creating build/bdist.linux-armv7l/wheel/funvip/preset 2024-05-22T04:24:46,300 copying build/lib/funvip/preset/.gitignore -> build/bdist.linux-armv7l/wheel/funvip/preset 2024-05-22T04:24:46,302 copying build/lib/funvip/preset/fast.yaml -> build/bdist.linux-armv7l/wheel/funvip/preset 2024-05-22T04:24:46,304 copying build/lib/funvip/preset/accurate.yaml -> build/bdist.linux-armv7l/wheel/funvip/preset 2024-05-22T04:24:46,306 copying build/lib/funvip/main.py -> build/bdist.linux-armv7l/wheel/funvip 2024-05-22T04:24:46,309 creating build/bdist.linux-armv7l/wheel/funvip/src 2024-05-22T04:24:46,310 copying build/lib/funvip/src/version.py -> build/bdist.linux-armv7l/wheel/funvip/src 2024-05-22T04:24:46,312 copying build/lib/funvip/src/ncbi.py -> build/bdist.linux-armv7l/wheel/funvip/src 2024-05-22T04:24:46,315 copying build/lib/funvip/src/cluster.py -> build/bdist.linux-armv7l/wheel/funvip/src 2024-05-22T04:24:46,317 copying build/lib/funvip/src/concatenate.py -> build/bdist.linux-armv7l/wheel/funvip/src 2024-05-22T04:24:46,319 copying build/lib/funvip/src/opt_generator.py -> build/bdist.linux-armv7l/wheel/funvip/src 2024-05-22T04:24:46,321 copying build/lib/funvip/src/validate_option.py -> build/bdist.linux-armv7l/wheel/funvip/src 2024-05-22T04:24:46,325 creating build/bdist.linux-armv7l/wheel/funvip/src/templates 2024-05-22T04:24:46,326 copying build/lib/funvip/src/templates/template.html -> build/bdist.linux-armv7l/wheel/funvip/src/templates 2024-05-22T04:24:46,329 copying build/lib/funvip/src/validate_input.py -> build/bdist.linux-armv7l/wheel/funvip/src 2024-05-22T04:24:46,332 copying build/lib/funvip/src/validation.py -> build/bdist.linux-armv7l/wheel/funvip/src 2024-05-22T04:24:46,334 copying build/lib/funvip/src/search.py -> build/bdist.linux-armv7l/wheel/funvip/src 2024-05-22T04:24:46,337 copying build/lib/funvip/src/trim.py -> build/bdist.linux-armv7l/wheel/funvip/src 2024-05-22T04:24:46,339 copying build/lib/funvip/src/tool.py -> build/bdist.linux-armv7l/wheel/funvip/src 2024-05-22T04:24:46,341 copying build/lib/funvip/src/reporter.py -> build/bdist.linux-armv7l/wheel/funvip/src 2024-05-22T04:24:46,345 copying build/lib/funvip/src/logger.py -> build/bdist.linux-armv7l/wheel/funvip/src 2024-05-22T04:24:46,346 copying build/lib/funvip/src/__init__.py -> build/bdist.linux-armv7l/wheel/funvip/src 2024-05-22T04:24:46,348 copying build/lib/funvip/src/dataset.py -> build/bdist.linux-armv7l/wheel/funvip/src 2024-05-22T04:24:46,351 copying build/lib/funvip/src/command.py -> build/bdist.linux-armv7l/wheel/funvip/src 2024-05-22T04:24:46,354 copying build/lib/funvip/src/.gitignore -> build/bdist.linux-armv7l/wheel/funvip/src 2024-05-22T04:24:46,355 copying build/lib/funvip/src/logics.py -> build/bdist.linux-armv7l/wheel/funvip/src 2024-05-22T04:24:46,357 copying build/lib/funvip/src/hasher.py -> build/bdist.linux-armv7l/wheel/funvip/src 2024-05-22T04:24:46,359 copying build/lib/funvip/src/save.py -> build/bdist.linux-armv7l/wheel/funvip/src 2024-05-22T04:24:46,362 copying build/lib/funvip/src/modeltest.py -> build/bdist.linux-armv7l/wheel/funvip/src 2024-05-22T04:24:46,364 copying build/lib/funvip/src/tree.py -> build/bdist.linux-armv7l/wheel/funvip/src 2024-05-22T04:24:46,366 copying build/lib/funvip/src/tree_interpretation.py -> build/bdist.linux-armv7l/wheel/funvip/src 2024-05-22T04:24:46,370 copying build/lib/funvip/src/align.py -> build/bdist.linux-armv7l/wheel/funvip/src 2024-05-22T04:24:46,372 copying build/lib/funvip/src/initialize.py -> build/bdist.linux-armv7l/wheel/funvip/src 2024-05-22T04:24:46,374 copying build/lib/funvip/src/tree_interpretation_pipe.py -> build/bdist.linux-armv7l/wheel/funvip/src 2024-05-22T04:24:46,377 copying build/lib/funvip/src/ext.py -> build/bdist.linux-armv7l/wheel/funvip/src 2024-05-22T04:24:46,380 creating build/bdist.linux-armv7l/wheel/funvip/src/__pycache__ 2024-05-22T04:24:46,381 copying build/lib/funvip/src/__pycache__/io.cpython-310.pyc -> build/bdist.linux-armv7l/wheel/funvip/src/__pycache__ 2024-05-22T04:24:46,384 copying build/lib/funvip/src/__pycache__/visualize.cpython-39.pyc -> build/bdist.linux-armv7l/wheel/funvip/src/__pycache__ 2024-05-22T04:24:46,386 copying build/lib/funvip/src/__pycache__/align.cpython-310.pyc -> build/bdist.linux-armv7l/wheel/funvip/src/__pycache__ 2024-05-22T04:24:46,388 copying build/lib/funvip/src/__pycache__/CAT_V_pipe.cpython-39.pyc -> build/bdist.linux-armv7l/wheel/funvip/src/__pycache__ 2024-05-22T04:24:46,390 copying build/lib/funvip/src/__pycache__/multigene.cpython-39.pyc -> build/bdist.linux-armv7l/wheel/funvip/src/__pycache__ 2024-05-22T04:24:46,392 copying build/lib/funvip/src/__pycache__/initialize.cpython-39.pyc -> build/bdist.linux-armv7l/wheel/funvip/src/__pycache__ 2024-05-22T04:24:46,394 copying build/lib/funvip/src/__pycache__/search.cpython-39.pyc -> build/bdist.linux-armv7l/wheel/funvip/src/__pycache__ 2024-05-22T04:24:46,397 copying build/lib/funvip/src/__pycache__/tool.cpython-39.pyc -> build/bdist.linux-armv7l/wheel/funvip/src/__pycache__ 2024-05-22T04:24:46,399 copying build/lib/funvip/src/__pycache__/reporter.cpython-39.pyc -> build/bdist.linux-armv7l/wheel/funvip/src/__pycache__ 2024-05-22T04:24:46,402 copying build/lib/funvip/src/__pycache__/dataset.cpython-39.pyc -> build/bdist.linux-armv7l/wheel/funvip/src/__pycache__ 2024-05-22T04:24:46,404 copying build/lib/funvip/src/__pycache__/ncbi.cpython-39.pyc -> build/bdist.linux-armv7l/wheel/funvip/src/__pycache__ 2024-05-22T04:24:46,406 copying build/lib/funvip/src/__pycache__/validation.cpython-39.pyc -> build/bdist.linux-armv7l/wheel/funvip/src/__pycache__ 2024-05-22T04:24:46,408 copying build/lib/funvip/src/__pycache__/__init__.cpython-39.pyc -> build/bdist.linux-armv7l/wheel/funvip/src/__pycache__ 2024-05-22T04:24:46,410 copying build/lib/funvip/src/__pycache__/CAT_V.cpython-39.pyc -> build/bdist.linux-armv7l/wheel/funvip/src/__pycache__ 2024-05-22T04:24:46,413 copying build/lib/funvip/src/__pycache__/ext.cpython-39.pyc -> build/bdist.linux-armv7l/wheel/funvip/src/__pycache__ 2024-05-22T04:24:46,415 copying build/lib/funvip/src/__pycache__/cluster.cpython-39.pyc -> build/bdist.linux-armv7l/wheel/funvip/src/__pycache__ 2024-05-22T04:24:46,417 copying build/lib/funvip/src/__pycache__/logger.cpython-39.pyc -> build/bdist.linux-armv7l/wheel/funvip/src/__pycache__ 2024-05-22T04:24:46,419 copying build/lib/funvip/src/__pycache__/ext.cpython-310.pyc -> build/bdist.linux-armv7l/wheel/funvip/src/__pycache__ 2024-05-22T04:24:46,422 copying build/lib/funvip/src/__pycache__/opt_generator.cpython-39.pyc -> build/bdist.linux-armv7l/wheel/funvip/src/__pycache__ 2024-05-22T04:24:46,424 copying build/lib/funvip/src/__pycache__/modeltest.cpython-39.pyc -> build/bdist.linux-armv7l/wheel/funvip/src/__pycache__ 2024-05-22T04:24:46,427 copying build/lib/funvip/src/__pycache__/CAT_V.cpython-310.pyc -> build/bdist.linux-armv7l/wheel/funvip/src/__pycache__ 2024-05-22T04:24:46,430 copying build/lib/funvip/src/__pycache__/hasher.cpython-39.pyc -> build/bdist.linux-armv7l/wheel/funvip/src/__pycache__ 2024-05-22T04:24:46,432 copying build/lib/funvip/src/__pycache__/io.cpython-39.pyc -> build/bdist.linux-armv7l/wheel/funvip/src/__pycache__ 2024-05-22T04:24:46,435 copying build/lib/funvip/src/__pycache__/__init__.cpython-310.pyc -> build/bdist.linux-armv7l/wheel/funvip/src/__pycache__ 2024-05-22T04:24:46,437 copying build/lib/funvip/src/__pycache__/CATV_pipe.cpython-310.pyc -> build/bdist.linux-armv7l/wheel/funvip/src/__pycache__ 2024-05-22T04:24:46,441 creating build/bdist.linux-armv7l/wheel/funvip/test_dataset 2024-05-22T04:24:46,442 creating build/bdist.linux-armv7l/wheel/funvip/test_dataset/penicillium 2024-05-22T04:24:46,444 creating build/bdist.linux-armv7l/wheel/funvip/test_dataset/penicillium/Query 2024-05-22T04:24:46,445 copying build/lib/funvip/test_dataset/penicillium/Query/Query.xlsx -> build/bdist.linux-armv7l/wheel/funvip/test_dataset/penicillium/Query 2024-05-22T04:24:46,448 copying build/lib/funvip/test_dataset/penicillium/preset.yaml -> build/bdist.linux-armv7l/wheel/funvip/test_dataset/penicillium 2024-05-22T04:24:46,450 copying build/lib/funvip/test_dataset/penicillium/Options.config -> build/bdist.linux-armv7l/wheel/funvip/test_dataset/penicillium 2024-05-22T04:24:46,452 creating build/bdist.linux-armv7l/wheel/funvip/test_dataset/penicillium/DB 2024-05-22T04:24:46,453 copying build/lib/funvip/test_dataset/penicillium/DB/DB_Penicillium.xlsx -> build/bdist.linux-armv7l/wheel/funvip/test_dataset/penicillium/DB 2024-05-22T04:24:46,462 creating build/bdist.linux-armv7l/wheel/funvip/test_dataset/terrei 2024-05-22T04:24:46,464 creating build/bdist.linux-armv7l/wheel/funvip/test_dataset/terrei/Query 2024-05-22T04:24:46,465 copying build/lib/funvip/test_dataset/terrei/Query/FunVIP_Aspergillus_query.xlsx -> build/bdist.linux-armv7l/wheel/funvip/test_dataset/terrei/Query 2024-05-22T04:24:46,468 copying build/lib/funvip/test_dataset/terrei/preset.yaml -> build/bdist.linux-armv7l/wheel/funvip/test_dataset/terrei 2024-05-22T04:24:46,470 creating build/bdist.linux-armv7l/wheel/funvip/test_dataset/terrei/DB 2024-05-22T04:24:46,471 copying build/lib/funvip/test_dataset/terrei/DB/FunVIP_Aspergillus_db.xlsx -> build/bdist.linux-armv7l/wheel/funvip/test_dataset/terrei/DB 2024-05-22T04:24:46,474 running install_egg_info 2024-05-22T04:24:46,478 Copying FunVIP.egg-info to build/bdist.linux-armv7l/wheel/FunVIP-0.3.22-py3.11.egg-info 2024-05-22T04:24:46,491 running install_scripts 2024-05-22T04:24:46,515 creating build/bdist.linux-armv7l/wheel/FunVIP-0.3.22.dist-info/WHEEL 2024-05-22T04:24:46,518 creating '/tmp/pip-wheel-r3dx68fx/.tmp-rzrj8uzo/FunVIP-0.3.22-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2024-05-22T04:24:46,522 adding 'funvip/FunVIP_GUI.py' 2024-05-22T04:24:46,524 adding 'funvip/__init__.py' 2024-05-22T04:24:46,526 adding 'funvip/main.py' 2024-05-22T04:24:46,530 adding 'funvip/data/Option_manager.xlsx' 2024-05-22T04:24:46,531 adding 'funvip/data/__init__.py' 2024-05-22T04:24:46,539 adding 'funvip/data/genus_line.txt' 2024-05-22T04:24:46,546 adding 'funvip/external/MAFFT_LICENSE' 2024-05-22T04:24:49,592 adding 'funvip/external/MAFFT_Windows.zip' 2024-05-22T04:24:49,762 adding 'funvip/external/__init__.py' 2024-05-22T04:24:49,771 adding 'funvip/external/BLAST_Windows/Uninstall-ncbi-blast-2.12.0+.exe' 2024-05-22T04:24:53,243 adding 'funvip/external/BLAST_Windows/bin/blastn.exe' 2024-05-22T04:24:53,363 adding 'funvip/external/BLAST_Windows/bin/cleanup-blastdb-volumes.py' 2024-05-22T04:24:53,368 adding 'funvip/external/BLAST_Windows/bin/get_species_taxids.sh' 2024-05-22T04:24:53,375 adding 'funvip/external/BLAST_Windows/bin/legacy_blast.pl' 2024-05-22T04:24:55,956 adding 'funvip/external/BLAST_Windows/bin/makeblastdb.exe' 2024-05-22T04:24:56,074 adding 'funvip/external/BLAST_Windows/bin/nghttp2.dll' 2024-05-22T04:24:56,080 adding 'funvip/external/BLAST_Windows/bin/update_blastdb.pl' 2024-05-22T04:24:56,082 adding 'funvip/external/BLAST_Windows/doc/README.txt' 2024-05-22T04:24:56,141 adding 'funvip/external/FastTree_Windows/FastTree.exe' 2024-05-22T04:24:56,183 adding 'funvip/external/Gblocks_Windows_0.91b/Gblocks_0.91b/Gblocks.exe' 2024-05-22T04:24:56,186 adding 'funvip/external/Gblocks_Windows_0.91b/Gblocks_0.91b/nad3.pir' 2024-05-22T04:24:56,187 adding 'funvip/external/Gblocks_Windows_0.91b/Gblocks_0.91b/paths' 2024-05-22T04:24:56,193 adding 'funvip/external/Gblocks_Windows_0.91b/Gblocks_0.91b/Documentation/Gblocks_documentation.html' 2024-05-22T04:24:56,195 adding 'funvip/external/Gblocks_Windows_0.91b/Gblocks_0.91b/more_alignments/cox2.pir' 2024-05-22T04:24:56,197 adding 'funvip/external/Gblocks_Windows_0.91b/Gblocks_0.91b/more_alignments/cytb.pir' 2024-05-22T04:24:56,198 adding 'funvip/external/Gblocks_Windows_0.91b/Gblocks_0.91b/more_alignments/nad3.pir' 2024-05-22T04:24:56,201 adding 'funvip/external/Gblocks_Windows_0.91b/Gblocks_0.91b/more_alignments/nad5.pir' 2024-05-22T04:24:56,207 adding 'funvip/external/RAxML_Windows/GPL-3.0.txt' 2024-05-22T04:24:56,209 adding 'funvip/external/RAxML_Windows/README' 2024-05-22T04:24:56,500 adding 'funvip/external/RAxML_Windows/raxmlHPC-PTHREADS-AVX2.exe' 2024-05-22T04:24:56,592 adding 'funvip/external/iqtree/example.cf' 2024-05-22T04:24:56,607 adding 'funvip/external/iqtree/example.nex' 2024-05-22T04:24:56,620 adding 'funvip/external/iqtree/example.phy' 2024-05-22T04:24:56,650 adding 'funvip/external/iqtree/models.nex' 2024-05-22T04:24:58,741 adding 'funvip/external/iqtree/bin/iqtree2-click.exe' 2024-05-22T04:25:00,918 adding 'funvip/external/iqtree/bin/iqtree2.exe' 2024-05-22T04:25:01,202 adding 'funvip/external/iqtree/bin/libiomp5md.dll' 2024-05-22T04:25:01,216 adding 'funvip/external/mmseqs_Windows/LICENSE.md' 2024-05-22T04:25:01,218 adding 'funvip/external/mmseqs_Windows/README.md' 2024-05-22T04:25:01,220 adding 'funvip/external/mmseqs_Windows/mmseqs.bat' 2024-05-22T04:25:01,351 adding 'funvip/external/mmseqs_Windows/bin/busybox.exe' 2024-05-22T04:25:01,365 adding 'funvip/external/mmseqs_Windows/bin/cygbz2-1.dll' 2024-05-22T04:25:01,378 adding 'funvip/external/mmseqs_Windows/bin/cyggcc_s-seh-1.dll' 2024-05-22T04:25:01,421 adding 'funvip/external/mmseqs_Windows/bin/cyggomp-1.dll' 2024-05-22T04:25:01,682 adding 'funvip/external/mmseqs_Windows/bin/cygstdc++-6.dll' 2024-05-22T04:25:02,279 adding 'funvip/external/mmseqs_Windows/bin/cygwin1.dll' 2024-05-22T04:25:02,316 adding 'funvip/external/mmseqs_Windows/bin/cygz.dll' 2024-05-22T04:25:05,653 adding 'funvip/external/mmseqs_Windows/bin/mmseqs.exe' 2024-05-22T04:25:05,776 adding 'funvip/external/mmseqs_Windows/examples/QUERY.fasta' 2024-05-22T04:25:05,780 adding 'funvip/external/mmseqs_Windows/matrices/PAM10.out' 2024-05-22T04:25:05,782 adding 'funvip/external/mmseqs_Windows/matrices/PAM100.out' 2024-05-22T04:25:05,783 adding 'funvip/external/mmseqs_Windows/matrices/PAM110.out' 2024-05-22T04:25:05,784 adding 'funvip/external/mmseqs_Windows/matrices/PAM120.out' 2024-05-22T04:25:05,786 adding 'funvip/external/mmseqs_Windows/matrices/PAM130.out' 2024-05-22T04:25:05,787 adding 'funvip/external/mmseqs_Windows/matrices/PAM140.out' 2024-05-22T04:25:05,788 adding 'funvip/external/mmseqs_Windows/matrices/PAM150.out' 2024-05-22T04:25:05,790 adding 'funvip/external/mmseqs_Windows/matrices/PAM160.out' 2024-05-22T04:25:05,791 adding 'funvip/external/mmseqs_Windows/matrices/PAM170.out' 2024-05-22T04:25:05,793 adding 'funvip/external/mmseqs_Windows/matrices/PAM180.out' 2024-05-22T04:25:05,795 adding 'funvip/external/mmseqs_Windows/matrices/PAM190.out' 2024-05-22T04:25:05,796 adding 'funvip/external/mmseqs_Windows/matrices/PAM20.out' 2024-05-22T04:25:05,798 adding 'funvip/external/mmseqs_Windows/matrices/PAM30.out' 2024-05-22T04:25:05,799 adding 'funvip/external/mmseqs_Windows/matrices/PAM40.out' 2024-05-22T04:25:05,800 adding 'funvip/external/mmseqs_Windows/matrices/PAM50.out' 2024-05-22T04:25:05,801 adding 'funvip/external/mmseqs_Windows/matrices/PAM60.out' 2024-05-22T04:25:05,802 adding 'funvip/external/mmseqs_Windows/matrices/PAM70.out' 2024-05-22T04:25:05,804 adding 'funvip/external/mmseqs_Windows/matrices/PAM80.out' 2024-05-22T04:25:05,805 adding 'funvip/external/mmseqs_Windows/matrices/PAM90.out' 2024-05-22T04:25:05,806 adding 'funvip/external/mmseqs_Windows/matrices/VTML10.out' 2024-05-22T04:25:05,807 adding 'funvip/external/mmseqs_Windows/matrices/VTML120.out' 2024-05-22T04:25:05,809 adding 'funvip/external/mmseqs_Windows/matrices/VTML160.out' 2024-05-22T04:25:05,810 adding 'funvip/external/mmseqs_Windows/matrices/VTML20.out' 2024-05-22T04:25:05,812 adding 'funvip/external/mmseqs_Windows/matrices/VTML40.out' 2024-05-22T04:25:05,813 adding 'funvip/external/mmseqs_Windows/matrices/VTML80.out' 2024-05-22T04:25:05,815 adding 'funvip/external/mmseqs_Windows/matrices/blosum100.out' 2024-05-22T04:25:05,816 adding 'funvip/external/mmseqs_Windows/matrices/blosum30.out' 2024-05-22T04:25:05,818 adding 'funvip/external/mmseqs_Windows/matrices/blosum35.out' 2024-05-22T04:25:05,819 adding 'funvip/external/mmseqs_Windows/matrices/blosum40.out' 2024-05-22T04:25:05,820 adding 'funvip/external/mmseqs_Windows/matrices/blosum45.out' 2024-05-22T04:25:05,822 adding 'funvip/external/mmseqs_Windows/matrices/blosum50.out' 2024-05-22T04:25:05,823 adding 'funvip/external/mmseqs_Windows/matrices/blosum55.out' 2024-05-22T04:25:05,825 adding 'funvip/external/mmseqs_Windows/matrices/blosum60.out' 2024-05-22T04:25:05,826 adding 'funvip/external/mmseqs_Windows/matrices/blosum62.out' 2024-05-22T04:25:05,828 adding 'funvip/external/mmseqs_Windows/matrices/blosum65.out' 2024-05-22T04:25:05,829 adding 'funvip/external/mmseqs_Windows/matrices/blosum70.out' 2024-05-22T04:25:05,831 adding 'funvip/external/mmseqs_Windows/matrices/blosum75.out' 2024-05-22T04:25:05,832 adding 'funvip/external/mmseqs_Windows/matrices/blosum80.out' 2024-05-22T04:25:05,834 adding 'funvip/external/mmseqs_Windows/matrices/blosum85.out' 2024-05-22T04:25:05,835 adding 'funvip/external/mmseqs_Windows/matrices/blosum90.out' 2024-05-22T04:25:05,837 adding 'funvip/external/mmseqs_Windows/matrices/blosum95.out' 2024-05-22T04:25:05,838 adding 'funvip/external/mmseqs_Windows/matrices/nucleotide.out' 2024-05-22T04:25:05,839 adding 'funvip/external/mmseqs_Windows/util/bash-completion.sh' 2024-05-22T04:25:05,842 adding 'funvip/external/trimal.v1.4/trimAl/AUTHORS' 2024-05-22T04:25:05,843 adding 'funvip/external/trimal.v1.4/trimAl/CHANGELOG' 2024-05-22T04:25:05,850 adding 'funvip/external/trimal.v1.4/trimAl/LICENSE' 2024-05-22T04:25:05,851 adding 'funvip/external/trimal.v1.4/trimAl/README' 2024-05-22T04:25:05,958 adding 'funvip/external/trimal.v1.4/trimAl/bin/libgcc_s_dw2-1.dll' 2024-05-22T04:25:06,485 adding 'funvip/external/trimal.v1.4/trimAl/bin/libstdc++-6.dll' 2024-05-22T04:25:06,553 adding 'funvip/external/trimal.v1.4/trimAl/bin/trimal.exe' 2024-05-22T04:25:06,558 adding 'funvip/external/trimal.v1.4/trimAl/scripts/check_codon_alignments.py' 2024-05-22T04:25:06,559 adding 'funvip/external/trimal.v1.4/trimAl/scripts/compare_trimmed_msas.sh' 2024-05-22T04:25:06,560 adding 'funvip/external/trimal.v1.4/trimAl/scripts/generateRandomAlignmentsUsingAsSeedRealAlignments.py' 2024-05-22T04:25:06,564 adding 'funvip/external/trimal.v1.4/trimAl/scripts/generate_trimmed_msas.sh' 2024-05-22T04:25:06,566 adding 'funvip/external/trimal.v1.4/trimAl/scripts/get_sequence_representative_from_alignment.py' 2024-05-22T04:25:06,568 adding 'funvip/external/trimal.v1.4/trimAl/scripts/get_sequences_gaps_ratio.py' 2024-05-22T04:25:06,569 adding 'funvip/external/trimal.v1.4/trimAl/scripts/remove_shorter_sequences.py' 2024-05-22T04:25:06,571 adding 'funvip/external/trimal.v1.4/trimAl/scripts/selective_trimming_for_dNdS_analyses.based_neighbours.py' 2024-05-22T04:25:06,573 adding 'funvip/external/trimal.v1.4/trimAl/scripts/set_manual_boundaries.py' 2024-05-22T04:25:06,585 adding 'funvip/external/trimal.v1.4/trimAl/source/alignment.cpp' 2024-05-22T04:25:06,588 adding 'funvip/external/trimal.v1.4/trimAl/source/alignment.h' 2024-05-22T04:25:06,612 adding 'funvip/external/trimal.v1.4/trimAl/source/alignment.o' 2024-05-22T04:25:06,615 adding 'funvip/external/trimal.v1.4/trimAl/source/autAlignment.cpp' 2024-05-22T04:25:06,618 adding 'funvip/external/trimal.v1.4/trimAl/source/autAlignment.o' 2024-05-22T04:25:06,620 adding 'funvip/external/trimal.v1.4/trimAl/source/compareFiles.cpp' 2024-05-22T04:25:06,622 adding 'funvip/external/trimal.v1.4/trimAl/source/compareFiles.h' 2024-05-22T04:25:06,624 adding 'funvip/external/trimal.v1.4/trimAl/source/compareFiles.o' 2024-05-22T04:25:06,626 adding 'funvip/external/trimal.v1.4/trimAl/source/defines.h' 2024-05-22T04:25:06,632 adding 'funvip/external/trimal.v1.4/trimAl/source/main.cpp' 2024-05-22T04:25:06,634 adding 'funvip/external/trimal.v1.4/trimAl/source/makefile' 2024-05-22T04:25:06,635 adding 'funvip/external/trimal.v1.4/trimAl/source/makefile.MacOS' 2024-05-22T04:25:06,637 adding 'funvip/external/trimal.v1.4/trimAl/source/readAl.cpp' 2024-05-22T04:25:06,684 adding 'funvip/external/trimal.v1.4/trimAl/source/readal.exe' 2024-05-22T04:25:06,692 adding 'funvip/external/trimal.v1.4/trimAl/source/rwAlignment.cpp' 2024-05-22T04:25:06,706 adding 'funvip/external/trimal.v1.4/trimAl/source/rwAlignment.o' 2024-05-22T04:25:06,709 adding 'funvip/external/trimal.v1.4/trimAl/source/sequencesMatrix.cpp' 2024-05-22T04:25:06,710 adding 'funvip/external/trimal.v1.4/trimAl/source/sequencesMatrix.h' 2024-05-22T04:25:06,712 adding 'funvip/external/trimal.v1.4/trimAl/source/sequencesMatrix.o' 2024-05-22T04:25:06,714 adding 'funvip/external/trimal.v1.4/trimAl/source/similarityMatrix.cpp' 2024-05-22T04:25:06,715 adding 'funvip/external/trimal.v1.4/trimAl/source/similarityMatrix.h' 2024-05-22T04:25:06,718 adding 'funvip/external/trimal.v1.4/trimAl/source/similarityMatrix.o' 2024-05-22T04:25:06,721 adding 'funvip/external/trimal.v1.4/trimAl/source/statAl.cpp' 2024-05-22T04:25:06,769 adding 'funvip/external/trimal.v1.4/trimAl/source/statal.exe' 2024-05-22T04:25:06,774 adding 'funvip/external/trimal.v1.4/trimAl/source/statisticsConservation.cpp' 2024-05-22T04:25:06,775 adding 'funvip/external/trimal.v1.4/trimAl/source/statisticsConservation.h' 2024-05-22T04:25:06,777 adding 'funvip/external/trimal.v1.4/trimAl/source/statisticsConservation.o' 2024-05-22T04:25:06,779 adding 'funvip/external/trimal.v1.4/trimAl/source/statisticsFiles.cpp' 2024-05-22T04:25:06,780 adding 'funvip/external/trimal.v1.4/trimAl/source/statisticsFiles.h' 2024-05-22T04:25:06,783 adding 'funvip/external/trimal.v1.4/trimAl/source/statisticsGaps.cpp' 2024-05-22T04:25:06,784 adding 'funvip/external/trimal.v1.4/trimAl/source/statisticsGaps.h' 2024-05-22T04:25:06,787 adding 'funvip/external/trimal.v1.4/trimAl/source/statisticsGaps.o' 2024-05-22T04:25:06,790 adding 'funvip/external/trimal.v1.4/trimAl/source/utils.cpp' 2024-05-22T04:25:06,792 adding 'funvip/external/trimal.v1.4/trimAl/source/utils.h' 2024-05-22T04:25:06,795 adding 'funvip/external/trimal.v1.4/trimAl/source/utils.o' 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adding 'funvip/src/ncbi.py' 2024-05-22T04:25:06,834 adding 'funvip/src/opt_generator.py' 2024-05-22T04:25:06,838 adding 'funvip/src/reporter.py' 2024-05-22T04:25:06,840 adding 'funvip/src/save.py' 2024-05-22T04:25:06,842 adding 'funvip/src/search.py' 2024-05-22T04:25:06,844 adding 'funvip/src/tool.py' 2024-05-22T04:25:06,846 adding 'funvip/src/tree.py' 2024-05-22T04:25:06,852 adding 'funvip/src/tree_interpretation.py' 2024-05-22T04:25:06,856 adding 'funvip/src/tree_interpretation_pipe.py' 2024-05-22T04:25:06,858 adding 'funvip/src/trim.py' 2024-05-22T04:25:06,862 adding 'funvip/src/validate_input.py' 2024-05-22T04:25:06,868 adding 'funvip/src/validate_option.py' 2024-05-22T04:25:06,869 adding 'funvip/src/validation.py' 2024-05-22T04:25:06,871 adding 'funvip/src/version.py' 2024-05-22T04:25:06,873 adding 'funvip/src/__pycache__/CATV_pipe.cpython-310.pyc' 2024-05-22T04:25:06,877 adding 'funvip/src/__pycache__/CAT_V.cpython-310.pyc' 2024-05-22T04:25:06,881 adding 'funvip/src/__pycache__/CAT_V.cpython-39.pyc' 2024-05-22T04:25:06,882 adding 'funvip/src/__pycache__/CAT_V_pipe.cpython-39.pyc' 2024-05-22T04:25:06,884 adding 'funvip/src/__pycache__/__init__.cpython-310.pyc' 2024-05-22T04:25:06,885 adding 'funvip/src/__pycache__/__init__.cpython-39.pyc' 2024-05-22T04:25:06,886 adding 'funvip/src/__pycache__/align.cpython-310.pyc' 2024-05-22T04:25:06,888 adding 'funvip/src/__pycache__/cluster.cpython-39.pyc' 2024-05-22T04:25:06,891 adding 'funvip/src/__pycache__/dataset.cpython-39.pyc' 2024-05-22T04:25:06,894 adding 'funvip/src/__pycache__/ext.cpython-310.pyc' 2024-05-22T04:25:06,896 adding 'funvip/src/__pycache__/ext.cpython-39.pyc' 2024-05-22T04:25:06,898 adding 'funvip/src/__pycache__/hasher.cpython-39.pyc' 2024-05-22T04:25:06,901 adding 'funvip/src/__pycache__/initialize.cpython-39.pyc' 2024-05-22T04:25:07,127 adding 'funvip/src/__pycache__/io.cpython-310.pyc' 2024-05-22T04:25:07,130 adding 'funvip/src/__pycache__/io.cpython-39.pyc' 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'funvip/test_dataset/penicillium/preset.yaml' 2024-05-22T04:25:07,189 adding 'funvip/test_dataset/penicillium/DB/DB_Penicillium.xlsx' 2024-05-22T04:25:07,197 adding 'funvip/test_dataset/penicillium/Query/Query.xlsx' 2024-05-22T04:25:07,199 adding 'funvip/test_dataset/terrei/preset.yaml' 2024-05-22T04:25:07,202 adding 'funvip/test_dataset/terrei/DB/FunVIP_Aspergillus_db.xlsx' 2024-05-22T04:25:07,205 adding 'funvip/test_dataset/terrei/Query/FunVIP_Aspergillus_query.xlsx' 2024-05-22T04:25:07,211 adding 'FunVIP-0.3.22.dist-info/LICENSE' 2024-05-22T04:25:07,213 adding 'FunVIP-0.3.22.dist-info/METADATA' 2024-05-22T04:25:07,214 adding 'FunVIP-0.3.22.dist-info/WHEEL' 2024-05-22T04:25:07,215 adding 'FunVIP-0.3.22.dist-info/entry_points.txt' 2024-05-22T04:25:07,215 adding 'FunVIP-0.3.22.dist-info/top_level.txt' 2024-05-22T04:25:07,219 adding 'FunVIP-0.3.22.dist-info/RECORD' 2024-05-22T04:25:07,238 removing build/bdist.linux-armv7l/wheel 2024-05-22T04:25:29,416 Building wheel for funvip (pyproject.toml): finished with status 'done' 2024-05-22T04:25:30,686 Created wheel for funvip: filename=FunVIP-0.3.22-py3-none-any.whl size=59748079 sha256=dd2db50f85481b3ce82217522dd0cf0afb20263cc65856f59e25fce5d1ce09d1 2024-05-22T04:25:30,687 Stored in directory: /tmp/pip-ephem-wheel-cache-79eox_3j/wheels/ed/73/cd/df489ddc9992c05a91b1c62b1f6c5866b3f7b42d61eeb3384e 2024-05-22T04:25:30,723 Successfully built funvip 2024-05-22T04:25:32,073 Removed build tracker: '/tmp/pip-build-tracker-kcu6i32q'