2024-05-22T06:33:55,910 Created temporary directory: /tmp/pip-build-tracker-v4unffwj 2024-05-22T06:33:55,911 Initialized build tracking at /tmp/pip-build-tracker-v4unffwj 2024-05-22T06:33:55,912 Created build tracker: /tmp/pip-build-tracker-v4unffwj 2024-05-22T06:33:55,912 Entered build tracker: /tmp/pip-build-tracker-v4unffwj 2024-05-22T06:33:55,913 Created temporary directory: /tmp/pip-wheel-cek20_b6 2024-05-22T06:33:55,916 Created temporary directory: /tmp/pip-ephem-wheel-cache-57lnyip6 2024-05-22T06:33:55,942 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2024-05-22T06:33:55,945 2 location(s) to search for versions of kssdtree: 2024-05-22T06:33:55,945 * https://pypi.org/simple/kssdtree/ 2024-05-22T06:33:55,945 * https://www.piwheels.org/simple/kssdtree/ 2024-05-22T06:33:55,946 Fetching project page and analyzing links: https://pypi.org/simple/kssdtree/ 2024-05-22T06:33:55,947 Getting page https://pypi.org/simple/kssdtree/ 2024-05-22T06:33:55,948 Found index url https://pypi.org/simple/ 2024-05-22T06:33:56,159 Fetched page https://pypi.org/simple/kssdtree/ as application/vnd.pypi.simple.v1+json 2024-05-22T06:33:56,161 Found link https://files.pythonhosted.org/packages/d5/1e/9e5c5945a44bb40002d1c259f734a531999fa6e87db89fe7c7ddcfc583cc/kssdtree-1.1.1.tar.gz (from https://pypi.org/simple/kssdtree/), version: 1.1.1 2024-05-22T06:33:56,161 Found link https://files.pythonhosted.org/packages/9a/4c/6516f734f5860e4b30f9091aaac5811663bfae72c4de4ae6566c89192767/kssdtree-1.1.2.tar.gz (from https://pypi.org/simple/kssdtree/), version: 1.1.2 2024-05-22T06:33:56,162 Fetching project page and analyzing links: https://www.piwheels.org/simple/kssdtree/ 2024-05-22T06:33:56,163 Getting page https://www.piwheels.org/simple/kssdtree/ 2024-05-22T06:33:56,164 Found index url https://www.piwheels.org/simple/ 2024-05-22T06:33:56,339 Fetched page https://www.piwheels.org/simple/kssdtree/ as text/html 2024-05-22T06:33:56,342 Skipping link: No binaries permitted for kssdtree: https://www.piwheels.org/simple/kssdtree/kssdtree-1.1.1-cp311-cp311-linux_armv6l.whl#sha256=29b8e7f4a3e60084db855e6d587231253771ad57184a3265922d659512e136fb (from https://www.piwheels.org/simple/kssdtree/) 2024-05-22T06:33:56,343 Skipping link: No binaries permitted for kssdtree: https://www.piwheels.org/simple/kssdtree/kssdtree-1.1.1-cp311-cp311-linux_armv7l.whl#sha256=29b8e7f4a3e60084db855e6d587231253771ad57184a3265922d659512e136fb (from https://www.piwheels.org/simple/kssdtree/) 2024-05-22T06:33:56,343 Skipping link: No binaries permitted for kssdtree: https://www.piwheels.org/simple/kssdtree/kssdtree-1.1.1-cp37-cp37m-linux_armv6l.whl#sha256=34b00b40f17a95b2cc5cbabd880acc2c56996457b0acd265cace6966c10b9575 (from https://www.piwheels.org/simple/kssdtree/) 2024-05-22T06:33:56,344 Skipping link: No binaries permitted for kssdtree: https://www.piwheels.org/simple/kssdtree/kssdtree-1.1.1-cp37-cp37m-linux_armv7l.whl#sha256=34b00b40f17a95b2cc5cbabd880acc2c56996457b0acd265cace6966c10b9575 (from https://www.piwheels.org/simple/kssdtree/) 2024-05-22T06:33:56,345 Skipping link: No binaries permitted for kssdtree: https://www.piwheels.org/simple/kssdtree/kssdtree-1.1.1-cp39-cp39-linux_armv6l.whl#sha256=04471408d60c00f568404b1ab01ca89567b36a1aa50ef6041aceef07ed1e45f4 (from https://www.piwheels.org/simple/kssdtree/) 2024-05-22T06:33:56,345 Skipping link: No binaries permitted for kssdtree: https://www.piwheels.org/simple/kssdtree/kssdtree-1.1.1-cp39-cp39-linux_armv7l.whl#sha256=04471408d60c00f568404b1ab01ca89567b36a1aa50ef6041aceef07ed1e45f4 (from https://www.piwheels.org/simple/kssdtree/) 2024-05-22T06:33:56,346 Skipping link: not a file: https://www.piwheels.org/simple/kssdtree/ 2024-05-22T06:33:56,346 Skipping link: not a file: https://pypi.org/simple/kssdtree/ 2024-05-22T06:33:56,366 Given no hashes to check 1 links for project 'kssdtree': discarding no candidates 2024-05-22T06:33:56,386 Collecting kssdtree==1.1.2 2024-05-22T06:33:56,388 Created temporary directory: /tmp/pip-unpack-n5997df6 2024-05-22T06:33:56,598 Downloading kssdtree-1.1.2.tar.gz (113 kB) 2024-05-22T06:33:56,832 Added kssdtree==1.1.2 from https://files.pythonhosted.org/packages/9a/4c/6516f734f5860e4b30f9091aaac5811663bfae72c4de4ae6566c89192767/kssdtree-1.1.2.tar.gz to build tracker '/tmp/pip-build-tracker-v4unffwj' 2024-05-22T06:33:56,834 Running setup.py (path:/tmp/pip-wheel-cek20_b6/kssdtree_128ca4b610754ff48358c05943930be5/setup.py) egg_info for package kssdtree 2024-05-22T06:33:56,835 Created temporary directory: /tmp/pip-pip-egg-info-ycdp62nm 2024-05-22T06:33:56,835 Preparing metadata (setup.py): started 2024-05-22T06:33:56,836 Running command python setup.py egg_info 2024-05-22T06:33:57,766 running egg_info 2024-05-22T06:33:57,768 creating /tmp/pip-pip-egg-info-ycdp62nm/kssdtree.egg-info 2024-05-22T06:33:57,795 writing /tmp/pip-pip-egg-info-ycdp62nm/kssdtree.egg-info/PKG-INFO 2024-05-22T06:33:57,799 writing dependency_links to /tmp/pip-pip-egg-info-ycdp62nm/kssdtree.egg-info/dependency_links.txt 2024-05-22T06:33:57,800 writing requirements to /tmp/pip-pip-egg-info-ycdp62nm/kssdtree.egg-info/requires.txt 2024-05-22T06:33:57,801 writing top-level names to /tmp/pip-pip-egg-info-ycdp62nm/kssdtree.egg-info/top_level.txt 2024-05-22T06:33:57,803 writing manifest file '/tmp/pip-pip-egg-info-ycdp62nm/kssdtree.egg-info/SOURCES.txt' 2024-05-22T06:33:57,917 reading manifest file '/tmp/pip-pip-egg-info-ycdp62nm/kssdtree.egg-info/SOURCES.txt' 2024-05-22T06:33:57,918 reading manifest template 'MANIFEST.in' 2024-05-22T06:33:57,935 writing manifest file '/tmp/pip-pip-egg-info-ycdp62nm/kssdtree.egg-info/SOURCES.txt' 2024-05-22T06:33:58,042 Preparing metadata (setup.py): finished with status 'done' 2024-05-22T06:33:58,046 Source in /tmp/pip-wheel-cek20_b6/kssdtree_128ca4b610754ff48358c05943930be5 has version 1.1.2, which satisfies requirement kssdtree==1.1.2 from https://files.pythonhosted.org/packages/9a/4c/6516f734f5860e4b30f9091aaac5811663bfae72c4de4ae6566c89192767/kssdtree-1.1.2.tar.gz 2024-05-22T06:33:58,047 Removed kssdtree==1.1.2 from https://files.pythonhosted.org/packages/9a/4c/6516f734f5860e4b30f9091aaac5811663bfae72c4de4ae6566c89192767/kssdtree-1.1.2.tar.gz from build tracker '/tmp/pip-build-tracker-v4unffwj' 2024-05-22T06:33:58,051 Created temporary directory: /tmp/pip-unpack-n2diqk82 2024-05-22T06:33:58,052 Created temporary directory: /tmp/pip-unpack-j3626biz 2024-05-22T06:33:58,057 Building wheels for collected packages: kssdtree 2024-05-22T06:33:58,062 Created temporary directory: /tmp/pip-wheel-lcxn02mk 2024-05-22T06:33:58,062 Building wheel for kssdtree (setup.py): started 2024-05-22T06:33:58,063 Destination directory: /tmp/pip-wheel-lcxn02mk 2024-05-22T06:33:58,064 Running command python setup.py bdist_wheel 2024-05-22T06:33:58,964 running bdist_wheel 2024-05-22T06:33:59,106 running build 2024-05-22T06:33:59,106 running build_py 2024-05-22T06:33:59,134 creating build 2024-05-22T06:33:59,135 creating build/lib.linux-armv7l-cpython-311 2024-05-22T06:33:59,136 copying kssdtree.py -> build/lib.linux-armv7l-cpython-311 2024-05-22T06:33:59,141 copying toolutils.py -> build/lib.linux-armv7l-cpython-311 2024-05-22T06:33:59,143 running egg_info 2024-05-22T06:33:59,170 writing kssdtree.egg-info/PKG-INFO 2024-05-22T06:33:59,173 writing dependency_links to kssdtree.egg-info/dependency_links.txt 2024-05-22T06:33:59,175 writing requirements to kssdtree.egg-info/requires.txt 2024-05-22T06:33:59,176 writing top-level names to kssdtree.egg-info/top_level.txt 2024-05-22T06:33:59,208 reading manifest file 'kssdtree.egg-info/SOURCES.txt' 2024-05-22T06:33:59,211 reading manifest template 'MANIFEST.in' 2024-05-22T06:33:59,227 writing manifest file 'kssdtree.egg-info/SOURCES.txt' 2024-05-22T06:33:59,229 running build_ext 2024-05-22T06:33:59,703 building 'kssd' extension 2024-05-22T06:33:59,704 creating build/temp.linux-armv7l-cpython-311 2024-05-22T06:33:59,704 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ikssdheaders -I/usr/include/python3.11 -c co2mco.c -o build/temp.linux-armv7l-cpython-311/co2mco.o -fopenmp 2024-05-22T06:33:59,906 co2mco.c: In function ‘cdb_kmerf2kmerdb’: 2024-05-22T06:33:59,907 co2mco.c:109:32: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2024-05-22T06:33:59,907 109 | for (unsigned int i = 0; i < comp_num; i++) { 2024-05-22T06:33:59,908 | ^ 2024-05-22T06:33:59,911 co2mco.c: In function ‘co2unitllmco’: 2024-05-22T06:33:59,911 co2mco.c:191:32: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2024-05-22T06:33:59,912 191 | for (unsigned int i = 0; i < bin_sz; i++) { 2024-05-22T06:33:59,912 | ^ 2024-05-22T06:34:00,619 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ikssdheaders -I/usr/include/python3.11 -c command_composite.c -o build/temp.linux-armv7l-cpython-311/command_composite.o -fopenmp 2024-05-22T06:34:00,996 command_composite.c: In function ‘get_species_abundance’: 2024-05-22T06:34:00,997 command_composite.c:32:72: warning: ‘%s’ directive argument is null [-Wformat-overflow=] 2024-05-22T06:34:00,998 32 | if (ref_dstat_fpath == NULL) fprintf(stderr, "cannot find %s under %s ", co_dstat, ref_dstat_fpath); 2024-05-22T06:34:00,998 | ^~ 2024-05-22T06:34:00,999 command_composite.c:34:72: warning: ‘%s’ directive argument is null [-Wformat-overflow=] 2024-05-22T06:34:00,999 34 | if (qry_dstat_fpath == NULL) fprintf(stderr, "cannot find %s under %s ", co_dstat, qry_dstat_fpath); 2024-05-22T06:34:01,000 | ^~ 2024-05-22T06:34:01,000 command_composite.c:64:37: warning: ‘.’ directive writing 1 byte into a region of size between 0 and 255 [-Wformat-overflow=] 2024-05-22T06:34:01,001 64 | sprintf(tmpfname, "%s/%s.%d", composite_opt->refdir, skch_prefix, c); 2024-05-22T06:34:01,002 | ^ 2024-05-22T06:34:01,002 command_composite.c:64:31: note: directive argument in the range [-2147483644, 2147483646] 2024-05-22T06:34:01,003 64 | sprintf(tmpfname, "%s/%s.%d", composite_opt->refdir, skch_prefix, c); 2024-05-22T06:34:01,004 | ^~~~~~~~~~ 2024-05-22T06:34:01,004 command_composite.c:64:13: note: ‘sprintf’ output 4 or more bytes (assuming 269) into a destination of size 256 2024-05-22T06:34:01,005 64 | sprintf(tmpfname, "%s/%s.%d", composite_opt->refdir, skch_prefix, c); 2024-05-22T06:34:01,005 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-05-22T06:34:01,006 command_composite.c:70:37: warning: ‘.’ directive writing 1 byte into a region of size between 0 and 255 [-Wformat-overflow=] 2024-05-22T06:34:01,007 70 | sprintf(tmpfname, "%s/%s.%d", composite_opt->refdir, idx_prefix, c); 2024-05-22T06:34:01,007 | ^ 2024-05-22T06:34:01,008 command_composite.c:70:31: note: directive argument in the range [-2147483644, 2147483646] 2024-05-22T06:34:01,009 70 | sprintf(tmpfname, "%s/%s.%d", composite_opt->refdir, idx_prefix, c); 2024-05-22T06:34:01,009 | ^~~~~~~~~~ 2024-05-22T06:34:01,010 command_composite.c:70:13: note: ‘sprintf’ output 4 or more bytes (assuming 269) into a destination of size 256 2024-05-22T06:34:01,011 70 | sprintf(tmpfname, "%s/%s.%d", composite_opt->refdir, idx_prefix, c); 2024-05-22T06:34:01,011 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-05-22T06:34:01,012 command_composite.c:76:37: warning: ‘.’ directive writing 1 byte into a region of size between 0 and 255 [-Wformat-overflow=] 2024-05-22T06:34:01,012 76 | sprintf(tmpfname, "%s/%s.%d", composite_opt->qrydir, skch_prefix, c); 2024-05-22T06:34:01,013 | ^ 2024-05-22T06:34:01,014 command_composite.c:76:31: note: directive argument in the range [-2147483644, 2147483646] 2024-05-22T06:34:01,014 76 | sprintf(tmpfname, "%s/%s.%d", composite_opt->qrydir, skch_prefix, c); 2024-05-22T06:34:01,015 | ^~~~~~~~~~ 2024-05-22T06:34:01,015 command_composite.c:76:13: note: ‘sprintf’ output 4 or more bytes (assuming 269) into a destination of size 256 2024-05-22T06:34:01,016 76 | sprintf(tmpfname, "%s/%s.%d", composite_opt->qrydir, skch_prefix, c); 2024-05-22T06:34:01,016 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-05-22T06:34:01,017 command_composite.c:82:37: warning: ‘.’ directive writing 1 byte into a region of size between 0 and 255 [-Wformat-overflow=] 2024-05-22T06:34:01,017 82 | sprintf(tmpfname, "%s/%s.%d", composite_opt->qrydir, idx_prefix, c); 2024-05-22T06:34:01,018 | ^ 2024-05-22T06:34:01,018 command_composite.c:82:31: note: directive argument in the range [-2147483644, 2147483646] 2024-05-22T06:34:01,019 82 | sprintf(tmpfname, "%s/%s.%d", composite_opt->qrydir, idx_prefix, c); 2024-05-22T06:34:01,019 | ^~~~~~~~~~ 2024-05-22T06:34:01,020 command_composite.c:82:13: note: ‘sprintf’ output 4 or more bytes (assuming 269) into a destination of size 256 2024-05-22T06:34:01,021 82 | sprintf(tmpfname, "%s/%s.%d", composite_opt->qrydir, idx_prefix, c); 2024-05-22T06:34:01,021 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-05-22T06:34:01,022 command_composite.c:88:37: warning: ‘.’ directive writing 1 byte into a region of size between 0 and 255 [-Wformat-overflow=] 2024-05-22T06:34:01,023 88 | sprintf(tmpfname, "%s/%s.%d.a", composite_opt->qrydir, skch_prefix, c); 2024-05-22T06:34:01,024 | ^ 2024-05-22T06:34:01,024 command_composite.c:88:31: note: directive argument in the range [-2147483644, 2147483646] 2024-05-22T06:34:01,025 88 | sprintf(tmpfname, "%s/%s.%d.a", composite_opt->qrydir, skch_prefix, c); 2024-05-22T06:34:01,026 | ^~~~~~~~~~~~ 2024-05-22T06:34:01,027 command_composite.c:88:13: note: ‘sprintf’ output 6 or more bytes (assuming 271) into a destination of size 256 2024-05-22T06:34:01,028 88 | sprintf(tmpfname, "%s/%s.%d.a", composite_opt->qrydir, skch_prefix, c); 2024-05-22T06:34:01,029 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-05-22T06:34:01,269 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ikssdheaders -I/usr/include/python3.11 -c command_dist.c -o build/temp.linux-armv7l-cpython-311/command_dist.o -fopenmp 2024-05-22T06:34:01,510 command_dist.c: In function ‘mco_cbd_co_dist’: 2024-05-22T06:34:01,512 command_dist.c:678:27: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 2024-05-22T06:34:01,513 678 | printf("disf_sz=%lu\trefnum=%d\tqrynum=%d\tnum_mapping_distf=%dbnum_infile=%d\t\t%lu\t%lu\tflag1:Ok\n", 2024-05-22T06:34:01,513 | ~~^ 2024-05-22T06:34:01,514 | | 2024-05-22T06:34:01,515 | long unsigned int 2024-05-22T06:34:01,515 | %u 2024-05-22T06:34:01,516 679 | disf_sz, mco_dstat_readin.infile_num, co_dstat_readin.infile_num, num_mapping_distf, bnum_infile, 2024-05-22T06:34:01,516 | ~~~~~~~ 2024-05-22T06:34:01,517 | | 2024-05-22T06:34:01,517 | size_t {aka unsigned int} 2024-05-22T06:34:01,518 command_dist.c:678:92: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 7 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 2024-05-22T06:34:01,518 678 | printf("disf_sz=%lu\trefnum=%d\tqrynum=%d\tnum_mapping_distf=%dbnum_infile=%d\t\t%lu\t%lu\tflag1:Ok\n", 2024-05-22T06:34:01,519 | ~~^ 2024-05-22T06:34:01,519 | | 2024-05-22T06:34:01,520 | long unsigned int 2024-05-22T06:34:01,520 | %u 2024-05-22T06:34:01,520 679 | disf_sz, mco_dstat_readin.infile_num, co_dstat_readin.infile_num, num_mapping_distf, bnum_infile, 2024-05-22T06:34:01,521 680 | maplength, (size_t) b * unitsz_distf_mapped); 2024-05-22T06:34:01,521 | ~~~~~~~~~ 2024-05-22T06:34:01,522 | | 2024-05-22T06:34:01,522 | size_t {aka unsigned int} 2024-05-22T06:34:01,523 command_dist.c:678:97: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 8 has type ‘unsigned int’ [-Wformat=] 2024-05-22T06:34:01,523 678 | printf("disf_sz=%lu\trefnum=%d\tqrynum=%d\tnum_mapping_distf=%dbnum_infile=%d\t\t%lu\t%lu\tflag1:Ok\n", 2024-05-22T06:34:01,524 | ~~^ 2024-05-22T06:34:01,524 | | 2024-05-22T06:34:01,525 | long unsigned int 2024-05-22T06:34:01,526 | %u 2024-05-22T06:34:01,526 679 | disf_sz, mco_dstat_readin.infile_num, co_dstat_readin.infile_num, num_mapping_distf, bnum_infile, 2024-05-22T06:34:01,527 680 | maplength, (size_t) b * unitsz_distf_mapped); 2024-05-22T06:34:01,527 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-05-22T06:34:01,528 | | 2024-05-22T06:34:01,529 | unsigned int 2024-05-22T06:34:01,530 command_dist.c:716:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2024-05-22T06:34:01,530 716 | for (int n = 0; n < fco_pos[k + 1] - fco_pos[k]; n++) { 2024-05-22T06:34:01,531 | ^ 2024-05-22T06:34:01,536 command_dist.c: In function ‘mco_cbdco_nobin_dist’: 2024-05-22T06:34:01,538 command_dist.c:864:27: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 2024-05-22T06:34:01,538 864 | printf("disf_sz=%lu\trefnum=%d\tqrynum=%d\tnum_mapping_distf=%d\tbatch_qrynum=%d\t%lu\t%lu\n", disf_sz, 2024-05-22T06:34:01,539 | ~~^ ~~~~~~~ 2024-05-22T06:34:01,539 | | | 2024-05-22T06:34:01,540 | long unsigned int size_t {aka unsigned int} 2024-05-22T06:34:01,540 | %u 2024-05-22T06:34:01,541 command_dist.c:864:93: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 7 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 2024-05-22T06:34:01,542 864 | printf("disf_sz=%lu\trefnum=%d\tqrynum=%d\tnum_mapping_distf=%d\tbatch_qrynum=%d\t%lu\t%lu\n", disf_sz, 2024-05-22T06:34:01,542 | ~~^ 2024-05-22T06:34:01,543 | | 2024-05-22T06:34:01,543 | long unsigned int 2024-05-22T06:34:01,544 | %u 2024-05-22T06:34:01,544 865 | mco_dstat_readin.infile_num, co_dstat_readin.infile_num, num_mapping_distf, bnum_infile, maplength, 2024-05-22T06:34:01,545 | ~~~~~~~~~ 2024-05-22T06:34:01,545 | | 2024-05-22T06:34:01,546 | size_t {aka unsigned int} 2024-05-22T06:34:01,546 command_dist.c:864:98: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 8 has type ‘unsigned int’ [-Wformat=] 2024-05-22T06:34:01,547 864 | printf("disf_sz=%lu\trefnum=%d\tqrynum=%d\tnum_mapping_distf=%d\tbatch_qrynum=%d\t%lu\t%lu\n", disf_sz, 2024-05-22T06:34:01,547 | ~~^ 2024-05-22T06:34:01,548 | | 2024-05-22T06:34:01,549 | long unsigned int 2024-05-22T06:34:01,550 | %u 2024-05-22T06:34:01,551 865 | mco_dstat_readin.infile_num, co_dstat_readin.infile_num, num_mapping_distf, bnum_infile, maplength, 2024-05-22T06:34:01,552 866 | (size_t) b * unitsz_distf_mapped); 2024-05-22T06:34:01,552 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-05-22T06:34:01,554 | | 2024-05-22T06:34:01,555 | unsigned int 2024-05-22T06:34:01,556 command_dist.c:811:13: warning: unused variable ‘fco_pos’ [-Wunused-variable] 2024-05-22T06:34:01,557 811 | size_t *fco_pos = malloc(sizeof(size_t) * (co_dstat_readin.infile_num + 1)); 2024-05-22T06:34:01,557 | ^~~~~~~ 2024-05-22T06:34:01,558 command_dist.c:810:17: warning: unused variable ‘cbd_fcode_stat’ [-Wunused-variable] 2024-05-22T06:34:01,558 810 | struct stat cbd_fcode_stat; 2024-05-22T06:34:01,559 | ^~~~~~~~~~~~~~ 2024-05-22T06:34:01,560 command_dist.c:809:31: warning: unused variable ‘cbd_fcode_comp_index_fp’ [-Wunused-variable] 2024-05-22T06:34:01,560 809 | FILE *cbd_fcode_comp_fp, *cbd_fcode_comp_index_fp; 2024-05-22T06:34:01,561 | ^~~~~~~~~~~~~~~~~~~~~~~ 2024-05-22T06:34:01,562 command_dist.c:809:11: warning: unused variable ‘cbd_fcode_comp_fp’ [-Wunused-variable] 2024-05-22T06:34:01,562 809 | FILE *cbd_fcode_comp_fp, *cbd_fcode_comp_index_fp; 2024-05-22T06:34:01,563 | ^~~~~~~~~~~~~~~~~ 2024-05-22T06:34:01,564 command_dist.c: In function ‘mco_cbd_koc_compatible_dist’: 2024-05-22T06:34:01,565 command_dist.c:1019:27: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 2024-05-22T06:34:01,566 1019 | printf("disf_sz=%lu\trefnum=%d\tqrynum=%d\tnum_mapping_distf=%dbnum_infile=%d\t\t%lu\t%lu\tflag1:Ok\n", 2024-05-22T06:34:01,567 | ~~^ 2024-05-22T06:34:01,568 | | 2024-05-22T06:34:01,569 | long unsigned int 2024-05-22T06:34:01,569 | %u 2024-05-22T06:34:01,570 1020 | disf_sz, mco_dstat_readin.infile_num, co_dstat_readin.infile_num, num_mapping_distf, bnum_infile, 2024-05-22T06:34:01,570 | ~~~~~~~ 2024-05-22T06:34:01,571 | | 2024-05-22T06:34:01,571 | size_t {aka unsigned int} 2024-05-22T06:34:01,572 command_dist.c:1019:92: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 7 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 2024-05-22T06:34:01,572 1019 | printf("disf_sz=%lu\trefnum=%d\tqrynum=%d\tnum_mapping_distf=%dbnum_infile=%d\t\t%lu\t%lu\tflag1:Ok\n", 2024-05-22T06:34:01,573 | ~~^ 2024-05-22T06:34:01,573 | | 2024-05-22T06:34:01,574 | long unsigned int 2024-05-22T06:34:01,575 | %u 2024-05-22T06:34:01,575 1020 | disf_sz, mco_dstat_readin.infile_num, co_dstat_readin.infile_num, num_mapping_distf, bnum_infile, 2024-05-22T06:34:01,576 1021 | maplength, (size_t) b * unitsz_distf_mapped); 2024-05-22T06:34:01,576 | ~~~~~~~~~ 2024-05-22T06:34:01,577 | | 2024-05-22T06:34:01,578 | size_t {aka unsigned int} 2024-05-22T06:34:01,578 command_dist.c:1019:97: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 8 has type ‘unsigned int’ [-Wformat=] 2024-05-22T06:34:01,579 1019 | printf("disf_sz=%lu\trefnum=%d\tqrynum=%d\tnum_mapping_distf=%dbnum_infile=%d\t\t%lu\t%lu\tflag1:Ok\n", 2024-05-22T06:34:01,579 | ~~^ 2024-05-22T06:34:01,580 | | 2024-05-22T06:34:01,581 | long unsigned int 2024-05-22T06:34:01,582 | %u 2024-05-22T06:34:01,582 1020 | disf_sz, mco_dstat_readin.infile_num, co_dstat_readin.infile_num, num_mapping_distf, bnum_infile, 2024-05-22T06:34:01,583 1021 | maplength, (size_t) b * unitsz_distf_mapped); 2024-05-22T06:34:01,583 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-05-22T06:34:01,584 | | 2024-05-22T06:34:01,584 | unsigned int 2024-05-22T06:34:01,585 command_dist.c:1035:27: warning: comparison of integer expressions of different signedness: ‘__off_t’ {aka ‘long int’} and ‘unsigned int’ [-Wsign-compare] 2024-05-22T06:34:01,586 1035 | if (s.st_size > sizeof(gidobj_t) * MCOMM_SZ) mco_mem = (gidobj_t *) realloc(mco_mem, s.st_size); 2024-05-22T06:34:01,586 | ^ 2024-05-22T06:34:01,587 command_dist.c: In function ‘mco_co_dist_core’: 2024-05-22T06:34:01,588 command_dist.c:1117:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘gidobj_t’ {aka ‘unsigned int’} [-Wsign-compare] 2024-05-22T06:34:01,588 1117 | for (int k = 1; k < unit_arrmco[ind][0] + 1; k++) { 2024-05-22T06:34:01,590 | ^ 2024-05-22T06:34:01,590 command_dist.c: In function ‘koc_dist_print_nobin’: 2024-05-22T06:34:01,591 command_dist.c:1240:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2024-05-22T06:34:01,591 1240 | for (int rid = 0; rid < ref_num; rid++) 2024-05-22T06:34:01,592 | ^ 2024-05-22T06:34:01,592 command_dist.c:1246:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2024-05-22T06:34:01,593 1246 | for (int rid = 0; rid < ref_num; rid++) { 2024-05-22T06:34:01,593 | ^ 2024-05-22T06:34:01,595 command_dist.c: In function ‘dist_print_nobin’: 2024-05-22T06:34:01,596 command_dist.c:1336:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2024-05-22T06:34:01,597 1336 | if ((N_max > NREF) || (N_max > ref_num)) { 2024-05-22T06:34:01,597 | ^ 2024-05-22T06:34:01,599 command_dist.c:1357:39: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2024-05-22T06:34:01,600 1357 | for (int rid = 0; rid < ref_num; rid++) { 2024-05-22T06:34:01,600 | ^ 2024-05-22T06:34:01,602 command_dist.c:1383:39: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2024-05-22T06:34:01,603 1383 | for (int rid = 0; rid < ref_num; rid++) 2024-05-22T06:34:01,603 | ^ 2024-05-22T06:34:01,995 command_dist.c: In function ‘run_stageI._omp_fn.1’: 2024-05-22T06:34:01,996 command_dist.c:404:21: warning: ‘com_abund_fp’ may be used uninitialized [-Wmaybe-uninitialized] 2024-05-22T06:34:01,996 404 | fwrite(tmp_mem, sizeof(unsigned short) * tmpkmerct, 1, com_abund_fp); 2024-05-22T06:34:01,997 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-05-22T06:34:01,998 command_dist.c:376:40: note: ‘com_abund_fp’ was declared here 2024-05-22T06:34:01,998 376 | FILE *com_cofp, *indexfp, *com_abund_fp; 2024-05-22T06:34:01,999 | ^~~~~~~~~~~~ 2024-05-22T06:34:02,836 command_dist.c: In function ‘get_dim_shuffle’: 2024-05-22T06:34:02,837 command_dist.c:268:36: warning: ‘%s’ directive writing up to 264 bytes into a region of size 256 [-Wformat-overflow=] 2024-05-22T06:34:02,838 268 | sprintf(shuf_infile_name, "%s.shuf", shuf_infile_name_prefix); 2024-05-22T06:34:02,838 | ^~ ~~~~~~~~~~~~~~~~~~~~~~~ 2024-05-22T06:34:02,839 command_dist.c:268:9: note: ‘sprintf’ output between 6 and 270 bytes into a destination of size 256 2024-05-22T06:34:02,840 268 | sprintf(shuf_infile_name, "%s.shuf", shuf_infile_name_prefix); 2024-05-22T06:34:02,841 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-05-22T06:34:03,737 command_dist.c: In function ‘mco_cbd_co_dist’: 2024-05-22T06:34:03,738 command_dist.c:597:37: warning: ‘%s’ directive writing 13 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2024-05-22T06:34:03,738 597 | sprintf(refmco_dstat_fpath, "%s/%s", refmco_dname, mco_dstat); 2024-05-22T06:34:03,739 | ^~ ~~~~~~~~~ 2024-05-22T06:34:03,740 command_dist.c:597:5: note: ‘sprintf’ output between 15 and 270 bytes into a destination of size 256 2024-05-22T06:34:03,740 597 | sprintf(refmco_dstat_fpath, "%s/%s", refmco_dname, mco_dstat); 2024-05-22T06:34:03,741 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-05-22T06:34:03,742 command_dist.c:626:25: warning: ‘/sharedk_ct.dat’ directive writing 15 bytes into a region of size between 1 and 256 [-Wformat-overflow=] 2024-05-22T06:34:03,742 626 | sprintf(onedist, "%s/sharedk_ct.dat", distout_dir); 2024-05-22T06:34:03,743 | ^~~~~~~~~~~~~~~ 2024-05-22T06:34:03,743 command_dist.c:626:5: note: ‘sprintf’ output between 16 and 271 bytes into a destination of size 256 2024-05-22T06:34:03,744 626 | sprintf(onedist, "%s/sharedk_ct.dat", distout_dir); 2024-05-22T06:34:03,744 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-05-22T06:34:03,745 command_dist.c:682:41: warning: ‘/mco.index.’ directive writing 11 bytes into a region of size between 1 and 256 [-Wformat-overflow=] 2024-05-22T06:34:03,745 682 | sprintf(mco_index_fcode, "%s/mco.index.%d", refmco_dname, j); 2024-05-22T06:34:03,746 | ^~~~~~~~~~~ 2024-05-22T06:34:03,746 command_dist.c:682:38: note: directive argument in the range [-2147483644, 2147483646] 2024-05-22T06:34:03,747 682 | sprintf(mco_index_fcode, "%s/mco.index.%d", refmco_dname, j); 2024-05-22T06:34:03,747 | ^~~~~~~~~~~~~~~~~ 2024-05-22T06:34:03,748 command_dist.c:682:13: note: ‘sprintf’ output between 13 and 278 bytes into a destination of size 256 2024-05-22T06:34:03,748 682 | sprintf(mco_index_fcode, "%s/mco.index.%d", refmco_dname, j); 2024-05-22T06:34:03,749 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-05-22T06:34:03,750 command_dist.c:683:35: warning: ‘/mco.’ directive writing 5 bytes into a region of size between 1 and 256 [-Wformat-overflow=] 2024-05-22T06:34:03,750 683 | sprintf(mco_fcode, "%s/mco.%d", refmco_dname, j); 2024-05-22T06:34:03,751 | ^~~~~ 2024-05-22T06:34:03,751 command_dist.c:683:32: note: directive argument in the range [-2147483644, 2147483646] 2024-05-22T06:34:03,752 683 | sprintf(mco_fcode, "%s/mco.%d", refmco_dname, j); 2024-05-22T06:34:03,753 | ^~~~~~~~~~~ 2024-05-22T06:34:03,753 command_dist.c:683:13: note: ‘sprintf’ output between 7 and 272 bytes into a destination of size 256 2024-05-22T06:34:03,754 683 | sprintf(mco_fcode, "%s/mco.%d", refmco_dname, j); 2024-05-22T06:34:03,755 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-05-22T06:34:03,993 command_dist.c: In function ‘mco_cbdco_nobin_dist’: 2024-05-22T06:34:03,994 command_dist.c:764:37: warning: ‘%s’ directive writing 13 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2024-05-22T06:34:03,995 764 | sprintf(refmco_dstat_fpath, "%s/%s", refmco_dname, mco_dstat); 2024-05-22T06:34:03,995 | ^~ ~~~~~~~~~ 2024-05-22T06:34:03,996 command_dist.c:764:5: note: ‘sprintf’ output between 15 and 270 bytes into a destination of size 256 2024-05-22T06:34:03,997 764 | sprintf(refmco_dstat_fpath, "%s/%s", refmco_dname, mco_dstat); 2024-05-22T06:34:03,997 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-05-22T06:34:03,998 command_dist.c:791:25: warning: ‘/sharedk_ct.dat’ directive writing 15 bytes into a region of size between 1 and 256 [-Wformat-overflow=] 2024-05-22T06:34:03,999 791 | sprintf(onedist, "%s/sharedk_ct.dat", distout_dir); 2024-05-22T06:34:03,999 | ^~~~~~~~~~~~~~~ 2024-05-22T06:34:04,000 command_dist.c:791:5: note: ‘sprintf’ output between 16 and 271 bytes into a destination of size 256 2024-05-22T06:34:04,001 791 | sprintf(onedist, "%s/sharedk_ct.dat", distout_dir); 2024-05-22T06:34:04,001 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-05-22T06:34:04,002 command_dist.c:824:23: warning: ‘/distance.out’ directive writing 13 bytes into a region of size between 1 and 256 [-Wformat-overflow=] 2024-05-22T06:34:04,003 824 | sprintf(distf, "%s/distance.out", distout_dir); 2024-05-22T06:34:04,003 | ^~~~~~~~~~~~~ 2024-05-22T06:34:04,004 command_dist.c:824:5: note: ‘sprintf’ output between 14 and 269 bytes into a destination of size 256 2024-05-22T06:34:04,004 824 | sprintf(distf, "%s/distance.out", distout_dir); 2024-05-22T06:34:04,004 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-05-22T06:34:04,005 command_dist.c:850:39: warning: ‘.’ directive writing 1 byte into a region of size between 0 and 255 [-Wformat-overflow=] 2024-05-22T06:34:04,005 850 | sprintf(mco_index_fcode, "%s/%s.%d", refmco_dname, mco_idx_prefix, j); 2024-05-22T06:34:04,006 | ^ 2024-05-22T06:34:04,006 command_dist.c:850:33: note: directive argument in the range [0, 536870912] 2024-05-22T06:34:04,007 850 | sprintf(mco_index_fcode, "%s/%s.%d", refmco_dname, mco_idx_prefix, j); 2024-05-22T06:34:04,007 | ^~~~~~~~~~ 2024-05-22T06:34:04,008 command_dist.c:850:8: note: ‘sprintf’ output 4 or more bytes (assuming 267) into a destination of size 256 2024-05-22T06:34:04,009 850 | sprintf(mco_index_fcode, "%s/%s.%d", refmco_dname, mco_idx_prefix, j); 2024-05-22T06:34:04,009 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-05-22T06:34:04,010 command_dist.c:852:34: warning: ‘.’ directive writing 1 byte into a region of size between 0 and 255 [-Wformat-overflow=] 2024-05-22T06:34:04,011 852 | sprintf(mco_fcode, "%s/%s.%d", refmco_dname, mco_gids_prefix, j); 2024-05-22T06:34:04,011 | ^ 2024-05-22T06:34:04,012 command_dist.c:852:28: note: directive argument in the range [0, 536870912] 2024-05-22T06:34:04,012 852 | sprintf(mco_fcode, "%s/%s.%d", refmco_dname, mco_gids_prefix, j); 2024-05-22T06:34:04,013 | ^~~~~~~~~~ 2024-05-22T06:34:04,014 command_dist.c:852:9: note: ‘sprintf’ output 4 or more bytes (assuming 267) into a destination of size 256 2024-05-22T06:34:04,014 852 | sprintf(mco_fcode, "%s/%s.%d", refmco_dname, mco_gids_prefix, j); 2024-05-22T06:34:04,015 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-05-22T06:34:04,276 command_dist.c: In function ‘mco_cbd_koc_compatible_dist’: 2024-05-22T06:34:04,277 command_dist.c:928:37: warning: ‘%s’ directive writing 13 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2024-05-22T06:34:04,278 928 | sprintf(refmco_dstat_fpath, "%s/%s", refmco_dname, mco_dstat); 2024-05-22T06:34:04,278 | ^~ ~~~~~~~~~ 2024-05-22T06:34:04,279 command_dist.c:928:5: note: ‘sprintf’ output between 15 and 270 bytes into a destination of size 256 2024-05-22T06:34:04,279 928 | sprintf(refmco_dstat_fpath, "%s/%s", refmco_dname, mco_dstat); 2024-05-22T06:34:04,280 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-05-22T06:34:04,280 command_dist.c:957:25: warning: ‘/sharedk_ct.dat’ directive writing 15 bytes into a region of size between 1 and 256 [-Wformat-overflow=] 2024-05-22T06:34:04,281 957 | sprintf(onedist, "%s/sharedk_ct.dat", distout_dir); 2024-05-22T06:34:04,282 | ^~~~~~~~~~~~~~~ 2024-05-22T06:34:04,282 command_dist.c:957:5: note: ‘sprintf’ output between 16 and 271 bytes into a destination of size 256 2024-05-22T06:34:04,283 957 | sprintf(onedist, "%s/sharedk_ct.dat", distout_dir); 2024-05-22T06:34:04,284 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-05-22T06:34:04,284 command_dist.c:991:23: warning: ‘/distance.out’ directive writing 13 bytes into a region of size between 1 and 256 [-Wformat-overflow=] 2024-05-22T06:34:04,285 991 | sprintf(distf, "%s/distance.out", distout_dir); 2024-05-22T06:34:04,285 | ^~~~~~~~~~~~~ 2024-05-22T06:34:04,286 command_dist.c:991:5: note: ‘sprintf’ output between 14 and 269 bytes into a destination of size 256 2024-05-22T06:34:04,286 991 | sprintf(distf, "%s/distance.out", distout_dir); 2024-05-22T06:34:04,287 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-05-22T06:34:04,287 command_dist.c:1023:41: warning: ‘/mco.index.’ directive writing 11 bytes into a region of size between 1 and 256 [-Wformat-overflow=] 2024-05-22T06:34:04,288 1023 | sprintf(mco_index_fcode, "%s/mco.index.%d", refmco_dname, j); 2024-05-22T06:34:04,288 | ^~~~~~~~~~~ 2024-05-22T06:34:04,288 command_dist.c:1023:38: note: directive argument in the range [-2147483644, 2147483646] 2024-05-22T06:34:04,289 1023 | sprintf(mco_index_fcode, "%s/mco.index.%d", refmco_dname, j); 2024-05-22T06:34:04,289 | ^~~~~~~~~~~~~~~~~ 2024-05-22T06:34:04,290 command_dist.c:1023:13: note: ‘sprintf’ output between 13 and 278 bytes into a destination of size 256 2024-05-22T06:34:04,290 1023 | sprintf(mco_index_fcode, "%s/mco.index.%d", refmco_dname, j); 2024-05-22T06:34:04,291 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-05-22T06:34:04,291 command_dist.c:1024:35: warning: ‘/mco.’ directive writing 5 bytes into a region of size between 1 and 256 [-Wformat-overflow=] 2024-05-22T06:34:04,291 1024 | sprintf(mco_fcode, "%s/mco.%d", refmco_dname, j); 2024-05-22T06:34:04,292 | ^~~~~ 2024-05-22T06:34:04,292 command_dist.c:1024:32: note: directive argument in the range [-2147483644, 2147483646] 2024-05-22T06:34:04,293 1024 | sprintf(mco_fcode, "%s/mco.%d", refmco_dname, j); 2024-05-22T06:34:04,294 | ^~~~~~~~~~~ 2024-05-22T06:34:04,294 command_dist.c:1024:13: note: ‘sprintf’ output between 7 and 272 bytes into a destination of size 256 2024-05-22T06:34:04,295 1024 | sprintf(mco_fcode, "%s/mco.%d", refmco_dname, j); 2024-05-22T06:34:04,296 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-05-22T06:34:04,567 command_dist.c: In function ‘combine_queries’: 2024-05-22T06:34:04,568 command_dist.c:1493:41: warning: ‘sprintf’ may write a terminating nul past the end of the destination [-Wformat-overflow=] 2024-05-22T06:34:04,569 1493 | sprintf(one_kmerct_list_name, "%s/%s", co_dir, kmerct_list_fname); 2024-05-22T06:34:04,569 | ^ 2024-05-22T06:34:04,570 command_dist.c:1493:5: note: ‘sprintf’ output 2 or more bytes (assuming 257) into a destination of size 256 2024-05-22T06:34:04,571 1493 | sprintf(one_kmerct_list_name, "%s/%s", co_dir, kmerct_list_fname); 2024-05-22T06:34:04,571 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-05-22T06:34:04,572 command_dist.c:1500:40: warning: ‘sprintf’ may write a terminating nul past the end of the destination [-Wformat-overflow=] 2024-05-22T06:34:04,573 1500 | sprintf(one_infilename_name, "%s/%s", co_dir, fname_fname); 2024-05-22T06:34:04,573 | ^ 2024-05-22T06:34:04,574 command_dist.c:1500:5: note: ‘sprintf’ output 2 or more bytes (assuming 257) into a destination of size 256 2024-05-22T06:34:04,575 1500 | sprintf(one_infilename_name, "%s/%s", co_dir, fname_fname); 2024-05-22T06:34:04,575 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-05-22T06:34:04,577 command_dist.c:1604:32: warning: ‘%s’ directive writing 12 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2024-05-22T06:34:04,578 1604 | sprintf(one_stat_name, "%s/%s", co_dir, co_dstat); 2024-05-22T06:34:04,578 | ^~ ~~~~~~~~ 2024-05-22T06:34:04,579 command_dist.c:1604:5: note: ‘sprintf’ output between 14 and 269 bytes into a destination of size 256 2024-05-22T06:34:04,580 1604 | sprintf(one_stat_name, "%s/%s", co_dir, co_dstat); 2024-05-22T06:34:04,580 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-05-22T06:34:05,080 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ikssdheaders -I/usr/include/python3.11 -c command_dist_wrapper.c -o build/temp.linux-armv7l-cpython-311/command_dist_wrapper.o -fopenmp 2024-05-22T06:34:05,256 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ikssdheaders -I/usr/include/python3.11 -c command_set.c -o build/temp.linux-armv7l-cpython-311/command_set.o -fopenmp 2024-05-22T06:34:05,443 command_set.c: In function ‘sketch_operate’: 2024-05-22T06:34:05,444 command_set.c:179:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2024-05-22T06:34:05,445 179 | for(int n = 0; n < fco_pos[i+1] - fco_pos[i]; n++){ 2024-05-22T06:34:05,446 | ^ 2024-05-22T06:34:05,466 command_set.c: In function ‘combin_subset_pans’: 2024-05-22T06:34:05,468 command_set.c:458:10: warning: passing argument 1 of ‘free’ discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers] 2024-05-22T06:34:05,468 458 | free(co_dstat_fpath); 2024-05-22T06:34:05,469 | ^~~~~~~~~~~~~~ 2024-05-22T06:34:05,470 In file included from kssdheaders/global_basic.h:159, 2024-05-22T06:34:05,471 from command_set.c:15: 2024-05-22T06:34:05,471 /usr/include/stdlib.h:568:25: note: expected ‘void *’ but argument is of type ‘const char *’ 2024-05-22T06:34:05,472 568 | extern void free (void *__ptr) __THROW; 2024-05-22T06:34:05,473 | ~~~~~~^~~~~ 2024-05-22T06:34:05,482 command_set.c: In function ‘grouping_genomes’: 2024-05-22T06:34:05,483 command_set.c:563:10: warning: passing argument 1 of ‘free’ discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers] 2024-05-22T06:34:05,484 563 | free(co_dstat_fpath); 2024-05-22T06:34:05,485 | ^~~~~~~~~~~~~~ 2024-05-22T06:34:05,486 /usr/include/stdlib.h:568:25: note: expected ‘void *’ but argument is of type ‘const char *’ 2024-05-22T06:34:05,487 568 | extern void free (void *__ptr) __THROW; 2024-05-22T06:34:05,487 | ~~~~~~^~~~~ 2024-05-22T06:34:05,661 command_set.c: In function ‘sketch_union’: 2024-05-22T06:34:05,662 command_set.c:72:27: warning: ‘sprintf’ may write a terminating nul past the end of the destination [-Wformat-overflow=] 2024-05-22T06:34:05,662 72 | sprintf(outpath,"%s/%s",set_opt.outdir,co_dstat); 2024-05-22T06:34:05,663 | ^ 2024-05-22T06:34:05,663 command_set.c:72:5: note: ‘sprintf’ output 2 or more bytes (assuming 257) into a destination of size 256 2024-05-22T06:34:05,664 72 | sprintf(outpath,"%s/%s",set_opt.outdir,co_dstat); 2024-05-22T06:34:05,665 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-05-22T06:34:05,665 command_set.c:83:29: warning: ‘%s’ directive writing 6 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2024-05-22T06:34:05,666 83 | sprintf(outpath,"%s/%s.%d",set_opt.insketchpath,skch_prefix,i); 2024-05-22T06:34:05,667 | ^~ ~~~~~~~~~~~ 2024-05-22T06:34:05,668 command_set.c:83:25: note: directive argument in the range [-2147483644, 2147483646] 2024-05-22T06:34:05,668 83 | sprintf(outpath,"%s/%s.%d",set_opt.insketchpath,skch_prefix,i); 2024-05-22T06:34:05,669 | ^~~~~~~~~~ 2024-05-22T06:34:05,669 command_set.c:83:9: note: ‘sprintf’ output between 10 and 275 bytes into a destination of size 256 2024-05-22T06:34:05,670 83 | sprintf(outpath,"%s/%s.%d",set_opt.insketchpath,skch_prefix,i); 2024-05-22T06:34:05,670 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-05-22T06:34:05,671 command_set.c:93:29: warning: ‘%s’ directive writing 3 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2024-05-22T06:34:05,671 93 | sprintf(outpath,"%s/%s.%d",set_opt.outdir,pan_prefix,i); 2024-05-22T06:34:05,672 | ^~ ~~~~~~~~~~ 2024-05-22T06:34:05,672 command_set.c:93:25: note: directive argument in the range [-2147483644, 2147483646] 2024-05-22T06:34:05,673 93 | sprintf(outpath,"%s/%s.%d",set_opt.outdir,pan_prefix,i); 2024-05-22T06:34:05,673 | ^~~~~~~~~~ 2024-05-22T06:34:05,674 command_set.c:93:9: note: ‘sprintf’ output between 7 and 272 bytes into a destination of size 256 2024-05-22T06:34:05,674 93 | sprintf(outpath,"%s/%s.%d",set_opt.outdir,pan_prefix,i); 2024-05-22T06:34:05,675 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-05-22T06:34:05,801 command_set.c: In function ‘sketch_operate’: 2024-05-22T06:34:05,802 command_set.c:154:29: warning: ‘%s’ directive writing 3 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2024-05-22T06:34:05,802 154 | sprintf(tmppath,"%s/%s.%d",set_opt.pansketchpath, pan_prefix, c); 2024-05-22T06:34:05,803 | ^~ ~~~~~~~~~~ 2024-05-22T06:34:05,803 command_set.c:154:25: note: directive argument in the range [-2147483644, 2147483646] 2024-05-22T06:34:05,804 154 | sprintf(tmppath,"%s/%s.%d",set_opt.pansketchpath, pan_prefix, c); 2024-05-22T06:34:05,805 | ^~~~~~~~~~ 2024-05-22T06:34:05,805 command_set.c:154:9: note: ‘sprintf’ output between 7 and 272 bytes into a destination of size 256 2024-05-22T06:34:05,806 154 | sprintf(tmppath,"%s/%s.%d",set_opt.pansketchpath, pan_prefix, c); 2024-05-22T06:34:05,806 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-05-22T06:34:05,807 command_set.c:156:33: warning: ‘%s’ directive writing 8 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2024-05-22T06:34:05,808 156 | sprintf(tmppath,"%s/%s.%d",set_opt.pansketchpath, uniq_pan_prefix, c); 2024-05-22T06:34:05,808 | ^~ ~~~~~~~~~~~~~~~ 2024-05-22T06:34:05,809 command_set.c:156:29: note: directive argument in the range [-2147483644, 2147483646] 2024-05-22T06:34:05,809 156 | sprintf(tmppath,"%s/%s.%d",set_opt.pansketchpath, uniq_pan_prefix, c); 2024-05-22T06:34:05,810 | ^~~~~~~~~~ 2024-05-22T06:34:05,810 command_set.c:156:13: note: ‘sprintf’ output between 12 and 277 bytes into a destination of size 256 2024-05-22T06:34:05,811 156 | sprintf(tmppath,"%s/%s.%d",set_opt.pansketchpath, uniq_pan_prefix, c); 2024-05-22T06:34:05,812 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-05-22T06:34:05,812 command_set.c:166:29: warning: ‘%s’ directive writing 6 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2024-05-22T06:34:05,813 166 | sprintf(tmppath,"%s/%s.index.%d",set_opt.insketchpath,skch_prefix, c); 2024-05-22T06:34:05,814 | ^~ ~~~~~~~~~~~ 2024-05-22T06:34:05,814 command_set.c:166:25: note: directive argument in the range [-2147483644, 2147483646] 2024-05-22T06:34:05,815 166 | sprintf(tmppath,"%s/%s.index.%d",set_opt.insketchpath,skch_prefix, c); 2024-05-22T06:34:05,816 | ^~~~~~~~~~~~~~~~ 2024-05-22T06:34:05,816 command_set.c:166:9: note: ‘sprintf’ output between 16 and 281 bytes into a destination of size 256 2024-05-22T06:34:05,817 166 | sprintf(tmppath,"%s/%s.index.%d",set_opt.insketchpath,skch_prefix, c); 2024-05-22T06:34:05,817 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-05-22T06:34:05,818 command_set.c:170:29: warning: ‘%s’ directive writing 6 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2024-05-22T06:34:05,818 170 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,skch_prefix, c); 2024-05-22T06:34:05,819 | ^~ ~~~~~~~~~~~ 2024-05-22T06:34:05,819 command_set.c:170:25: note: directive argument in the range [-2147483644, 2147483646] 2024-05-22T06:34:05,820 170 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,skch_prefix, c); 2024-05-22T06:34:05,820 | ^~~~~~~~~~ 2024-05-22T06:34:05,821 command_set.c:170:9: note: ‘sprintf’ output between 10 and 275 bytes into a destination of size 256 2024-05-22T06:34:05,821 170 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,skch_prefix, c); 2024-05-22T06:34:05,822 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-05-22T06:34:05,822 command_set.c:175:29: warning: ‘%s’ directive writing 6 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2024-05-22T06:34:05,823 175 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,skch_prefix, c); 2024-05-22T06:34:05,824 | ^~ ~~~~~~~~~~~ 2024-05-22T06:34:05,824 command_set.c:175:25: note: directive argument in the range [-2147483644, 2147483646] 2024-05-22T06:34:05,825 175 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,skch_prefix, c); 2024-05-22T06:34:05,825 | ^~~~~~~~~~ 2024-05-22T06:34:05,826 command_set.c:175:9: note: ‘sprintf’ output between 10 and 275 bytes into a destination of size 256 2024-05-22T06:34:05,827 175 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,skch_prefix, c); 2024-05-22T06:34:05,827 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-05-22T06:34:05,828 command_set.c:188:29: warning: ‘%s’ directive writing 6 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2024-05-22T06:34:05,829 188 | sprintf(tmppath,"%s/%s.index.%d",set_opt.outdir,skch_prefix, c); 2024-05-22T06:34:05,830 | ^~ ~~~~~~~~~~~ 2024-05-22T06:34:05,830 command_set.c:188:25: note: directive argument in the range [-2147483644, 2147483646] 2024-05-22T06:34:05,831 188 | sprintf(tmppath,"%s/%s.index.%d",set_opt.outdir,skch_prefix, c); 2024-05-22T06:34:05,831 | ^~~~~~~~~~~~~~~~ 2024-05-22T06:34:05,832 command_set.c:188:9: note: ‘sprintf’ output between 16 and 281 bytes into a destination of size 256 2024-05-22T06:34:05,833 188 | sprintf(tmppath,"%s/%s.index.%d",set_opt.outdir,skch_prefix, c); 2024-05-22T06:34:05,834 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-05-22T06:34:05,834 command_set.c:193:27: warning: ‘sprintf’ may write a terminating nul past the end of the destination [-Wformat-overflow=] 2024-05-22T06:34:05,835 193 | sprintf(tmppath,"%s/%s",set_opt.outdir,co_dstat); 2024-05-22T06:34:05,836 | ^ 2024-05-22T06:34:05,836 command_set.c:193:5: note: ‘sprintf’ output 2 or more bytes (assuming 257) into a destination of size 256 2024-05-22T06:34:05,837 193 | sprintf(tmppath,"%s/%s",set_opt.outdir,co_dstat); 2024-05-22T06:34:05,838 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-05-22T06:34:05,998 command_set.c: In function ‘uniq_sketch_union’: 2024-05-22T06:34:05,999 command_set.c:220:39: warning: ‘sprintf’ may write a terminating nul past the end of the destination [-Wformat-overflow=] 2024-05-22T06:34:05,999 220 | sprintf(unionco,"%s.%d",uniq_pan_prefix,i); 2024-05-22T06:34:06,000 | ^ 2024-05-22T06:34:06,000 command_set.c:220:17: note: ‘sprintf’ output between 11 and 21 bytes into a destination of size 20 2024-05-22T06:34:06,001 220 | sprintf(unionco,"%s.%d",uniq_pan_prefix,i); 2024-05-22T06:34:06,001 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-05-22T06:34:06,001 command_set.c:235:27: warning: ‘sprintf’ may write a terminating nul past the end of the destination [-Wformat-overflow=] 2024-05-22T06:34:06,002 235 | sprintf(outpath,"%s/%s",set_opt.outdir,co_dstat); 2024-05-22T06:34:06,003 | ^ 2024-05-22T06:34:06,003 command_set.c:235:5: note: ‘sprintf’ output 2 or more bytes (assuming 257) into a destination of size 256 2024-05-22T06:34:06,004 235 | sprintf(outpath,"%s/%s",set_opt.outdir,co_dstat); 2024-05-22T06:34:06,004 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-05-22T06:34:06,005 command_set.c:248:29: warning: ‘%s’ directive writing 6 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2024-05-22T06:34:06,005 248 | sprintf(outpath,"%s/%s.%d",set_opt.insketchpath,skch_prefix,i); 2024-05-22T06:34:06,006 | ^~ ~~~~~~~~~~~ 2024-05-22T06:34:06,007 command_set.c:248:25: note: directive argument in the range [-2147483644, 2147483646] 2024-05-22T06:34:06,007 248 | sprintf(outpath,"%s/%s.%d",set_opt.insketchpath,skch_prefix,i); 2024-05-22T06:34:06,008 | ^~~~~~~~~~ 2024-05-22T06:34:06,009 command_set.c:248:9: note: ‘sprintf’ output between 10 and 275 bytes into a destination of size 256 2024-05-22T06:34:06,009 248 | sprintf(outpath,"%s/%s.%d",set_opt.insketchpath,skch_prefix,i); 2024-05-22T06:34:06,010 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-05-22T06:34:06,011 command_set.c:260:29: warning: ‘%s’ directive writing 8 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2024-05-22T06:34:06,011 260 | sprintf(outpath,"%s/%s.%d",set_opt.outdir,uniq_pan_prefix,i); 2024-05-22T06:34:06,012 | ^~ ~~~~~~~~~~~~~~~ 2024-05-22T06:34:06,013 command_set.c:260:25: note: directive argument in the range [-2147483644, 2147483646] 2024-05-22T06:34:06,014 260 | sprintf(outpath,"%s/%s.%d",set_opt.outdir,uniq_pan_prefix,i); 2024-05-22T06:34:06,014 | ^~~~~~~~~~ 2024-05-22T06:34:06,015 command_set.c:260:9: note: ‘sprintf’ output between 12 and 277 bytes into a destination of size 256 2024-05-22T06:34:06,015 260 | sprintf(outpath,"%s/%s.%d",set_opt.outdir,uniq_pan_prefix,i); 2024-05-22T06:34:06,016 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-05-22T06:34:06,144 command_set.c: In function ‘combin_pans’: 2024-05-22T06:34:06,145 command_set.c:298:29: warning: ‘%s’ directive writing 6 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2024-05-22T06:34:06,145 298 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,skch_prefix,c); 2024-05-22T06:34:06,146 | ^~ ~~~~~~~~~~~ 2024-05-22T06:34:06,147 command_set.c:298:25: note: directive argument in the range [0, 1073741823] 2024-05-22T06:34:06,148 298 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,skch_prefix,c); 2024-05-22T06:34:06,149 | ^~~~~~~~~~ 2024-05-22T06:34:06,150 command_set.c:298:9: note: ‘sprintf’ output between 10 and 274 bytes into a destination of size 256 2024-05-22T06:34:06,151 298 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,skch_prefix,c); 2024-05-22T06:34:06,153 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-05-22T06:34:06,153 command_set.c:301:29: warning: ‘%s’ directive writing 12 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2024-05-22T06:34:06,154 301 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,idx_prefix,c); 2024-05-22T06:34:06,154 | ^~ ~~~~~~~~~~ 2024-05-22T06:34:06,155 command_set.c:301:25: note: directive argument in the range [0, 1073741823] 2024-05-22T06:34:06,155 301 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,idx_prefix,c); 2024-05-22T06:34:06,156 | ^~~~~~~~~~ 2024-05-22T06:34:06,156 command_set.c:301:9: note: ‘sprintf’ output between 16 and 280 bytes into a destination of size 256 2024-05-22T06:34:06,157 301 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,idx_prefix,c); 2024-05-22T06:34:06,157 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-05-22T06:34:06,158 command_set.c:343:27: warning: ‘sprintf’ may write a terminating nul past the end of the destination [-Wformat-overflow=] 2024-05-22T06:34:06,159 343 | sprintf(tmppath,"%s/%s",set_opt.outdir,co_dstat); 2024-05-22T06:34:06,159 | ^ 2024-05-22T06:34:06,160 command_set.c:343:5: note: ‘sprintf’ output 2 or more bytes (assuming 257) into a destination of size 256 2024-05-22T06:34:06,160 343 | sprintf(tmppath,"%s/%s",set_opt.outdir,co_dstat); 2024-05-22T06:34:06,161 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-05-22T06:34:06,367 command_set.c: In function ‘combin_subset_pans’: 2024-05-22T06:34:06,368 command_set.c:470:29: warning: ‘%s’ directive writing 6 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2024-05-22T06:34:06,368 470 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,skch_prefix,c); 2024-05-22T06:34:06,369 | ^~ ~~~~~~~~~~~ 2024-05-22T06:34:06,370 command_set.c:470:25: note: directive argument in the range [-2147483644, 2147483646] 2024-05-22T06:34:06,370 470 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,skch_prefix,c); 2024-05-22T06:34:06,371 | ^~~~~~~~~~ 2024-05-22T06:34:06,371 command_set.c:470:9: note: ‘sprintf’ output between 10 and 275 bytes into a destination of size 256 2024-05-22T06:34:06,372 470 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,skch_prefix,c); 2024-05-22T06:34:06,373 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-05-22T06:34:06,373 command_set.c:476:29: warning: ‘%s’ directive writing 12 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2024-05-22T06:34:06,374 476 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,idx_prefix,c); 2024-05-22T06:34:06,375 | ^~ ~~~~~~~~~~ 2024-05-22T06:34:06,375 command_set.c:476:25: note: directive argument in the range [-2147483644, 2147483646] 2024-05-22T06:34:06,376 476 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,idx_prefix,c); 2024-05-22T06:34:06,376 | ^~~~~~~~~~ 2024-05-22T06:34:06,377 command_set.c:476:9: note: ‘sprintf’ output between 16 and 281 bytes into a destination of size 256 2024-05-22T06:34:06,377 476 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,idx_prefix,c); 2024-05-22T06:34:06,378 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-05-22T06:34:06,379 command_set.c:482:29: warning: ‘%s’ directive writing 6 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2024-05-22T06:34:06,380 482 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,skch_prefix,c); 2024-05-22T06:34:06,381 | ^~ ~~~~~~~~~~~ 2024-05-22T06:34:06,381 command_set.c:482:25: note: directive argument in the range [-2147483644, 2147483646] 2024-05-22T06:34:06,382 482 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,skch_prefix,c); 2024-05-22T06:34:06,382 | ^~~~~~~~~~ 2024-05-22T06:34:06,383 command_set.c:482:9: note: ‘sprintf’ output between 10 and 275 bytes into a destination of size 256 2024-05-22T06:34:06,383 482 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,skch_prefix,c); 2024-05-22T06:34:06,384 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-05-22T06:34:06,384 command_set.c:513:29: warning: ‘%s’ directive writing 12 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2024-05-22T06:34:06,385 513 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,idx_prefix,c); 2024-05-22T06:34:06,385 | ^~ ~~~~~~~~~~ 2024-05-22T06:34:06,386 command_set.c:513:25: note: directive argument in the range [-2147483644, 2147483646] 2024-05-22T06:34:06,386 513 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,idx_prefix,c); 2024-05-22T06:34:06,387 | ^~~~~~~~~~ 2024-05-22T06:34:06,387 command_set.c:513:9: note: ‘sprintf’ output between 16 and 281 bytes into a destination of size 256 2024-05-22T06:34:06,388 513 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,idx_prefix,c); 2024-05-22T06:34:06,388 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-05-22T06:34:06,389 command_set.c:524:27: warning: ‘sprintf’ may write a terminating nul past the end of the destination [-Wformat-overflow=] 2024-05-22T06:34:06,389 524 | sprintf(tmppath,"%s/%s",set_opt.outdir,co_dstat); 2024-05-22T06:34:06,390 | ^ 2024-05-22T06:34:06,391 command_set.c:524:5: note: ‘sprintf’ output 2 or more bytes (assuming 257) into a destination of size 256 2024-05-22T06:34:06,391 524 | sprintf(tmppath,"%s/%s",set_opt.outdir,co_dstat); 2024-05-22T06:34:06,392 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-05-22T06:34:06,612 command_set.c: In function ‘grouping_genomes’: 2024-05-22T06:34:06,613 command_set.c:575:29: warning: ‘%s’ directive writing 6 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2024-05-22T06:34:06,614 575 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,skch_prefix,c); 2024-05-22T06:34:06,614 | ^~ ~~~~~~~~~~~ 2024-05-22T06:34:06,615 command_set.c:575:25: note: directive argument in the range [-2147483644, 2147483646] 2024-05-22T06:34:06,616 575 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,skch_prefix,c); 2024-05-22T06:34:06,616 | ^~~~~~~~~~ 2024-05-22T06:34:06,617 command_set.c:575:9: note: ‘sprintf’ output between 10 and 275 bytes into a destination of size 256 2024-05-22T06:34:06,617 575 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,skch_prefix,c); 2024-05-22T06:34:06,618 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-05-22T06:34:06,618 command_set.c:581:29: warning: ‘%s’ directive writing 12 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2024-05-22T06:34:06,619 581 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,idx_prefix,c); 2024-05-22T06:34:06,619 | ^~ ~~~~~~~~~~ 2024-05-22T06:34:06,620 command_set.c:581:25: note: directive argument in the range [-2147483644, 2147483646] 2024-05-22T06:34:06,621 581 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,idx_prefix,c); 2024-05-22T06:34:06,621 | ^~~~~~~~~~ 2024-05-22T06:34:06,622 command_set.c:581:9: note: ‘sprintf’ output between 16 and 281 bytes into a destination of size 256 2024-05-22T06:34:06,622 581 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,idx_prefix,c); 2024-05-22T06:34:06,623 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-05-22T06:34:06,623 command_set.c:613:29: warning: ‘%s’ directive writing 6 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2024-05-22T06:34:06,624 613 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,skch_prefix,c); 2024-05-22T06:34:06,624 | ^~ ~~~~~~~~~~~ 2024-05-22T06:34:06,625 command_set.c:613:25: note: directive argument in the range [-2147483644, 2147483646] 2024-05-22T06:34:06,625 613 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,skch_prefix,c); 2024-05-22T06:34:06,626 | ^~~~~~~~~~ 2024-05-22T06:34:06,626 command_set.c:613:9: note: ‘sprintf’ output between 10 and 275 bytes into a destination of size 256 2024-05-22T06:34:06,627 613 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,skch_prefix,c); 2024-05-22T06:34:06,627 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-05-22T06:34:06,628 command_set.c:635:29: warning: ‘%s’ directive writing 12 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2024-05-22T06:34:06,628 635 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,idx_prefix,c); 2024-05-22T06:34:06,629 | ^~ ~~~~~~~~~~ 2024-05-22T06:34:06,629 command_set.c:635:25: note: directive argument in the range [-2147483644, 2147483646] 2024-05-22T06:34:06,630 635 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,idx_prefix,c); 2024-05-22T06:34:06,630 | ^~~~~~~~~~ 2024-05-22T06:34:06,631 command_set.c:635:9: note: ‘sprintf’ output between 16 and 281 bytes into a destination of size 256 2024-05-22T06:34:06,632 635 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,idx_prefix,c); 2024-05-22T06:34:06,632 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-05-22T06:34:06,633 command_set.c:646:27: warning: ‘sprintf’ may write a terminating nul past the end of the destination [-Wformat-overflow=] 2024-05-22T06:34:06,633 646 | sprintf(tmppath,"%s/%s",set_opt.outdir,co_dstat); 2024-05-22T06:34:06,634 | ^ 2024-05-22T06:34:06,635 command_set.c:646:5: note: ‘sprintf’ output 2 or more bytes (assuming 257) into a destination of size 256 2024-05-22T06:34:06,635 646 | sprintf(tmppath,"%s/%s",set_opt.outdir,co_dstat); 2024-05-22T06:34:06,636 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-05-22T06:34:06,917 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ikssdheaders -I/usr/include/python3.11 -c command_shuffle.c -o build/temp.linux-armv7l-cpython-311/command_shuffle.o -fopenmp 2024-05-22T06:34:07,235 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ikssdheaders -I/usr/include/python3.11 -c global_basic.c -o build/temp.linux-armv7l-cpython-311/global_basic.o -fopenmp 2024-05-22T06:34:07,412 global_basic.c: In function ‘organize_infile_list’: 2024-05-22T06:34:07,413 global_basic.c:195:20: warning: implicit declaration of function ‘isspace’ [-Wimplicit-function-declaration] 2024-05-22T06:34:07,414 195 | while (isspace(*buf)) buf++; 2024-05-22T06:34:07,414 | ^~~~~~~ 2024-05-22T06:34:07,415 global_basic.c:35:1: note: include ‘’ or provide a declaration of ‘isspace’ 2024-05-22T06:34:07,416 34 | #include 2024-05-22T06:34:07,416 +++ |+#include 2024-05-22T06:34:07,417 35 | 2024-05-22T06:34:07,418 global_basic.c:201:69: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 6 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 2024-05-22T06:34:07,419 201 | "the input list: %s\n %dth line: %s has %lu characters exceed the maximal allowed length %d", 2024-05-22T06:34:07,420 | ~~^ 2024-05-22T06:34:07,420 | | 2024-05-22T06:34:07,421 | long unsigned int 2024-05-22T06:34:07,421 | %u 2024-05-22T06:34:07,422 202 | list_path, file_num, buf, strlen(buf), PATHLEN); 2024-05-22T06:34:07,422 | ~~~~~~~~~~~ 2024-05-22T06:34:07,423 | | 2024-05-22T06:34:07,423 | size_t {aka unsigned int} 2024-05-22T06:34:07,424 global_basic.c:233:69: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 6 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 2024-05-22T06:34:07,424 233 | "the input list: %s\n %dth line: %s has %lu characters exceed the maximal allowed length %d", 2024-05-22T06:34:07,425 | ~~^ 2024-05-22T06:34:07,425 | | 2024-05-22T06:34:07,426 | long unsigned int 2024-05-22T06:34:07,426 | %u 2024-05-22T06:34:07,427 234 | list_path, file_num, buf, strlen(buf), PATHLEN); 2024-05-22T06:34:07,428 | ~~~~~~~~~~~ 2024-05-22T06:34:07,428 | | 2024-05-22T06:34:07,429 | size_t {aka unsigned int} 2024-05-22T06:34:08,184 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ikssdheaders -I/usr/include/python3.11 -c iseq2comem.c -o build/temp.linux-armv7l-cpython-311/iseq2comem.o -fopenmp 2024-05-22T06:34:08,364 iseq2comem.c: In function ‘reads2mco’: 2024-05-22T06:34:08,365 iseq2comem.c:156:18: warning: comparison of integer expressions of different signedness: ‘llong’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare] 2024-05-22T06:34:08,366 156 | if (base > TL) { 2024-05-22T06:34:08,367 | ^ 2024-05-22T06:34:08,367 iseq2comem.c:160:26: warning: comparison of integer expressions of different signedness: ‘llong’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare] 2024-05-22T06:34:08,368 160 | if ((pfilter >= dim_end) || (pfilter < dim_start)) continue; 2024-05-22T06:34:08,369 | ^~ 2024-05-22T06:34:08,369 iseq2comem.c:160:50: warning: comparison of integer expressions of different signedness: ‘llong’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare] 2024-05-22T06:34:08,370 160 | if ((pfilter >= dim_end) || (pfilter < dim_start)) continue; 2024-05-22T06:34:08,371 | ^ 2024-05-22T06:34:08,372 iseq2comem.c: In function ‘fasta2co’: 2024-05-22T06:34:08,373 iseq2comem.c:239:18: warning: comparison of integer expressions of different signedness: ‘llong’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare] 2024-05-22T06:34:08,374 239 | if (base > TL) { 2024-05-22T06:34:08,374 | ^ 2024-05-22T06:34:08,375 iseq2comem.c:243:26: warning: comparison of integer expressions of different signedness: ‘llong’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare] 2024-05-22T06:34:08,376 243 | if ((pfilter >= dim_end) || (pfilter < dim_start)) continue; 2024-05-22T06:34:08,377 | ^~ 2024-05-22T06:34:08,377 iseq2comem.c:243:50: warning: comparison of integer expressions of different signedness: ‘llong’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare] 2024-05-22T06:34:08,378 243 | if ((pfilter >= dim_end) || (pfilter < dim_start)) continue; 2024-05-22T06:34:08,378 | ^ 2024-05-22T06:34:08,379 iseq2comem.c: In function ‘fastq2co’: 2024-05-22T06:34:08,379 iseq2comem.c:272:11: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long long unsigned int’ [-Wsign-compare] 2024-05-22T06:34:08,380 272 | if (M >= CT_MAX) fprintf(stderr, "fastq2co(): Occurence num should smaller than %d", (int) CT_MAX); 2024-05-22T06:34:08,380 | ^~ 2024-05-22T06:34:08,381 iseq2comem.c:318:18: warning: comparison of integer expressions of different signedness: ‘llong’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare] 2024-05-22T06:34:08,382 318 | if (base > TL) { 2024-05-22T06:34:08,382 | ^ 2024-05-22T06:34:08,383 iseq2comem.c:322:26: warning: comparison of integer expressions of different signedness: ‘llong’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare] 2024-05-22T06:34:08,383 322 | if ((pfilter >= dim_end) || (pfilter < dim_start)) continue; 2024-05-22T06:34:08,384 | ^~ 2024-05-22T06:34:08,384 iseq2comem.c:322:50: warning: comparison of integer expressions of different signedness: ‘llong’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare] 2024-05-22T06:34:08,385 322 | if ((pfilter >= dim_end) || (pfilter < dim_start)) continue; 2024-05-22T06:34:08,385 | ^ 2024-05-22T06:34:08,386 iseq2comem.c:341:44: warning: comparison of integer expressions of different signedness: ‘long long unsigned int’ and ‘int’ [-Wsign-compare] 2024-05-22T06:34:08,387 341 | if (!((co[n] & CT_MAX) < M)) co[n] |= CT_MAX; 2024-05-22T06:34:08,387 | ^ 2024-05-22T06:34:08,388 iseq2comem.c: In function ‘fastq2koc’: 2024-05-22T06:34:08,389 iseq2comem.c:402:18: warning: comparison of integer expressions of different signedness: ‘llong’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare] 2024-05-22T06:34:08,389 402 | if (base > TL) { 2024-05-22T06:34:08,390 | ^ 2024-05-22T06:34:08,391 iseq2comem.c:406:26: warning: comparison of integer expressions of different signedness: ‘llong’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare] 2024-05-22T06:34:08,391 406 | if ((pfilter >= dim_end) || (pfilter < dim_start)) continue; 2024-05-22T06:34:08,392 | ^~ 2024-05-22T06:34:08,393 iseq2comem.c:406:50: warning: comparison of integer expressions of different signedness: ‘llong’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare] 2024-05-22T06:34:08,394 406 | if ((pfilter >= dim_end) || (pfilter < dim_start)) continue; 2024-05-22T06:34:08,394 | ^ 2024-05-22T06:34:08,397 iseq2comem.c: In function ‘mt_shortreads2koc’: 2024-05-22T06:34:08,398 iseq2comem.c:582:34: warning: comparison of integer expressions of different signedness: ‘llong’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare] 2024-05-22T06:34:08,399 582 | if ((pfilter >= dim_end) || (pfilter < dim_start)) continue; 2024-05-22T06:34:08,399 | ^~ 2024-05-22T06:34:08,400 iseq2comem.c:582:58: warning: comparison of integer expressions of different signedness: ‘llong’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare] 2024-05-22T06:34:08,401 582 | if ((pfilter >= dim_end) || (pfilter < dim_start)) continue; 2024-05-22T06:34:08,402 | ^ 2024-05-22T06:34:09,747 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ikssdheaders -I/usr/include/python3.11 -c mman.c -o build/temp.linux-armv7l-cpython-311/mman.o -fopenmp 2024-05-22T06:34:09,803 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ikssdheaders -I/usr/include/python3.11 -c mytime.c -o build/temp.linux-armv7l-cpython-311/mytime.o -fopenmp 2024-05-22T06:34:09,927 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ikssdheaders -I/usr/include/python3.11 -c pykssd.c -o build/temp.linux-armv7l-cpython-311/pykssd.o -fopenmp 2024-05-22T06:34:10,320 pykssd.c: In function ‘py_dist_dispatch’: 2024-05-22T06:34:10,320 pykssd.c:304:13: warning: unused variable ‘state1’ [-Wunused-variable] 2024-05-22T06:34:10,321 304 | int state1 = dist_dispatch(&dist_opt_val1); 2024-05-22T06:34:10,321 | ^~~~~~ 2024-05-22T06:34:10,322 pykssd.c:361:13: warning: unused variable ‘state2’ [-Wunused-variable] 2024-05-22T06:34:10,323 361 | int state2 = dist_dispatch(&dist_opt_val2); 2024-05-22T06:34:10,324 | ^~~~~~ 2024-05-22T06:34:10,325 pykssd.c:480:13: warning: unused variable ‘state4’ [-Wunused-variable] 2024-05-22T06:34:10,326 480 | int state4 = dist_dispatch(&dist_opt_val4); 2024-05-22T06:34:10,327 | ^~~~~~ 2024-05-22T06:34:10,892 arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/co2mco.o build/temp.linux-armv7l-cpython-311/command_composite.o build/temp.linux-armv7l-cpython-311/command_dist.o build/temp.linux-armv7l-cpython-311/command_dist_wrapper.o build/temp.linux-armv7l-cpython-311/command_set.o build/temp.linux-armv7l-cpython-311/command_shuffle.o build/temp.linux-armv7l-cpython-311/global_basic.o build/temp.linux-armv7l-cpython-311/iseq2comem.o build/temp.linux-armv7l-cpython-311/mman.o build/temp.linux-armv7l-cpython-311/mytime.o build/temp.linux-armv7l-cpython-311/pykssd.o -L/usr/lib/arm-linux-gnueabihf -lz -o build/lib.linux-armv7l-cpython-311/kssd.cpython-311-arm-linux-gnueabihf.so -fopenmp 2024-05-22T06:34:11,049 building 'nj' extension 2024-05-22T06:34:11,049 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Injheaders -I/usr/include/python3.11 -c align.c -o build/temp.linux-armv7l-cpython-311/align.o 2024-05-22T06:34:11,508 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Injheaders -I/usr/include/python3.11 -c buildtree.c -o build/temp.linux-armv7l-cpython-311/buildtree.o 2024-05-22T06:34:11,659 buildtree.c: In function ‘UPGMA_buildtree’: 2024-05-22T06:34:11,660 buildtree.c:716:33: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2024-05-22T06:34:11,661 716 | if (min_of_row_idx[m] == minj || min_of_row_idx[m] == mini) { 2024-05-22T06:34:11,662 | ^~ 2024-05-22T06:34:11,663 buildtree.c:716:62: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2024-05-22T06:34:11,664 716 | if (min_of_row_idx[m] == minj || min_of_row_idx[m] == mini) { 2024-05-22T06:34:11,664 | ^~ 2024-05-22T06:34:12,331 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Injheaders -I/usr/include/python3.11 -c cluster.c -o build/temp.linux-armv7l-cpython-311/cluster.o 2024-05-22T06:34:12,707 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Injheaders -I/usr/include/python3.11 -c distancemat.c -o build/temp.linux-armv7l-cpython-311/distancemat.o 2024-05-22T06:34:12,842 distancemat.c: In function ‘clone_DistanceMatrix’: 2024-05-22T06:34:12,843 distancemat.c:226:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2024-05-22T06:34:12,843 226 | for( i=0; i < dest->size; i++) { 2024-05-22T06:34:12,844 | ^ 2024-05-22T06:34:12,844 distancemat.c: In function ‘empty_DistanceMatrix’: 2024-05-22T06:34:12,845 distancemat.c:260:15: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2024-05-22T06:34:12,845 260 | for( i=0; i < mat->size; i++) { 2024-05-22T06:34:12,846 | ^ 2024-05-22T06:34:12,847 distancemat.c: In function ‘print_DistanceMatrix’: 2024-05-22T06:34:12,848 distancemat.c:349:18: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2024-05-22T06:34:12,848 349 | for(row=0; row < mat->size; row++) { 2024-05-22T06:34:12,849 | ^ 2024-05-22T06:34:12,850 distancemat.c: In function ‘read_phylip_DistanceMatrix’: 2024-05-22T06:34:12,851 distancemat.c:410:11: warning: suggest parentheses around assignment used as truth value [-Wparentheses] 2024-05-22T06:34:12,852 410 | while(c = fgetc(handle)) { 2024-05-22T06:34:12,852 | ^ 2024-05-22T06:34:13,241 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Injheaders -I/usr/include/python3.11 -c pynj.c -o build/temp.linux-armv7l-cpython-311/pynj.o 2024-05-22T06:34:13,683 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Injheaders -I/usr/include/python3.11 -c sequence.c -o build/temp.linux-armv7l-cpython-311/sequence.o 2024-05-22T06:34:13,911 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Injheaders -I/usr/include/python3.11 -c tree.c -o build/temp.linux-armv7l-cpython-311/tree.o 2024-05-22T06:34:14,726 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Injheaders -I/usr/include/python3.11 -c util.c -o build/temp.linux-armv7l-cpython-311/util.o 2024-05-22T06:34:14,904 arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/align.o build/temp.linux-armv7l-cpython-311/buildtree.o build/temp.linux-armv7l-cpython-311/cluster.o build/temp.linux-armv7l-cpython-311/distancemat.o build/temp.linux-armv7l-cpython-311/pynj.o build/temp.linux-armv7l-cpython-311/sequence.o build/temp.linux-armv7l-cpython-311/tree.o build/temp.linux-armv7l-cpython-311/util.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/nj.cpython-311-arm-linux-gnueabihf.so 2024-05-22T06:34:15,014 building 'dnj' extension 2024-05-22T06:34:15,015 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Idnjheaders -I/usr/include/python3.11 -c bytescale.c -o build/temp.linux-armv7l-cpython-311/bytescale.o -fopenmp 2024-05-22T06:34:15,072 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Idnjheaders -I/usr/include/python3.11 -c dnj.c -o build/temp.linux-armv7l-cpython-311/dnj.o -fopenmp 2024-05-22T06:34:15,209 dnj.c: In function ‘minQpair’: 2024-05-22T06:34:15,210 dnj.c:70:13: warning: left shift count >= width of type [-Wshift-count-overflow] 2024-05-22T06:34:15,210 70 | pos <<= sizeof(unsigned) * 8; 2024-05-22T06:34:15,211 | ^~~ 2024-05-22T06:34:15,211 dnj.c:126:21: warning: left shift count >= width of type [-Wshift-count-overflow] 2024-05-22T06:34:15,212 126 | pos <<= sizeof(unsigned) * 8; 2024-05-22T06:34:15,212 | ^~~ 2024-05-22T06:34:15,213 dnj.c: In function ‘maxQpair’: 2024-05-22T06:34:15,213 dnj.c:157:13: warning: left shift count >= width of type [-Wshift-count-overflow] 2024-05-22T06:34:15,214 157 | pos <<= sizeof(unsigned) * 8; 2024-05-22T06:34:15,214 | ^~~ 2024-05-22T06:34:15,215 dnj.c:213:21: warning: left shift count >= width of type [-Wshift-count-overflow] 2024-05-22T06:34:15,216 213 | pos <<= sizeof(unsigned) * 8; 2024-05-22T06:34:15,216 | ^~~ 2024-05-22T06:34:15,217 dnj.c: In function ‘UPGMApair’: 2024-05-22T06:34:15,217 dnj.c:237:13: warning: left shift count >= width of type [-Wshift-count-overflow] 2024-05-22T06:34:15,218 237 | pos <<= sizeof(unsigned) * 8; 2024-05-22T06:34:15,218 | ^~~ 2024-05-22T06:34:15,219 dnj.c:284:25: warning: left shift count >= width of type [-Wshift-count-overflow] 2024-05-22T06:34:15,220 284 | pos <<= sizeof(unsigned) * 8; 2024-05-22T06:34:15,220 | ^~~ 2024-05-22T06:34:15,221 dnj.c:291:21: warning: left shift count >= width of type [-Wshift-count-overflow] 2024-05-22T06:34:15,221 291 | pos <<= sizeof(unsigned) * 8; 2024-05-22T06:34:15,222 | ^~~ 2024-05-22T06:34:15,222 dnj.c: In function ‘minQrow’: 2024-05-22T06:34:15,223 dnj.c:374:17: warning: left shift count >= width of type [-Wshift-count-overflow] 2024-05-22T06:34:15,224 374 | pos <<= sizeof(unsigned) * 8; 2024-05-22T06:34:15,224 | ^~~ 2024-05-22T06:34:15,225 dnj.c: In function ‘maxQrow’: 2024-05-22T06:34:15,226 dnj.c:435:17: warning: left shift count >= width of type [-Wshift-count-overflow] 2024-05-22T06:34:15,226 435 | pos <<= sizeof(unsigned) * 8; 2024-05-22T06:34:15,227 | ^~~ 2024-05-22T06:34:15,227 dnj.c: In function ‘UPGMArow’: 2024-05-22T06:34:15,228 dnj.c:488:21: warning: left shift count >= width of type [-Wshift-count-overflow] 2024-05-22T06:34:15,228 488 | pos <<= sizeof(unsigned) * 8; 2024-05-22T06:34:15,229 | ^~~ 2024-05-22T06:34:15,230 dnj.c:494:17: warning: left shift count >= width of type [-Wshift-count-overflow] 2024-05-22T06:34:15,230 494 | pos <<= sizeof(unsigned) * 8; 2024-05-22T06:34:15,231 | ^~~ 2024-05-22T06:34:15,231 dnj.c: In function ‘minQ_thread’: 2024-05-22T06:34:15,232 dnj.c:553:17: warning: left shift count >= width of type [-Wshift-count-overflow] 2024-05-22T06:34:15,233 553 | pos <<= sizeof(unsigned) * 8; 2024-05-22T06:34:15,234 | ^~~ 2024-05-22T06:34:16,614 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Idnjheaders -I/usr/include/python3.11 -c filebuff.c -o build/temp.linux-armv7l-cpython-311/filebuff.o -fopenmp 2024-05-22T06:34:16,734 filebuff.c: In function ‘BuffgzFileBuff’: 2024-05-22T06:34:16,735 filebuff.c:99:54: warning: comparison of integer expressions of different signedness: ‘uInt’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2024-05-22T06:34:16,736 99 | if(status == Z_STREAM_END && strm->avail_out == dest->buffSize) { 2024-05-22T06:34:16,737 | ^~ 2024-05-22T06:34:17,098 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Idnjheaders -I/usr/include/python3.11 -c hclust.c -o build/temp.linux-armv7l-cpython-311/hclust.o -fopenmp 2024-05-22T06:34:17,263 hclust.c: In function ‘minQ’: 2024-05-22T06:34:17,263 hclust.c:364:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2024-05-22T06:34:17,264 364 | while(++i < Q->n) { 2024-05-22T06:34:17,264 | ^ 2024-05-22T06:34:17,265 hclust.c:377:13: warning: left shift count >= width of type [-Wshift-count-overflow] 2024-05-22T06:34:17,266 377 | pos <<= sizeof(unsigned) * 8; 2024-05-22T06:34:17,266 | ^~~ 2024-05-22T06:34:17,267 hclust.c: In function ‘maxQ’: 2024-05-22T06:34:17,267 hclust.c:394:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2024-05-22T06:34:17,268 394 | while(++i < Q->n) { 2024-05-22T06:34:17,268 | ^ 2024-05-22T06:34:17,269 hclust.c:407:13: warning: left shift count >= width of type [-Wshift-count-overflow] 2024-05-22T06:34:17,269 407 | pos <<= sizeof(unsigned) * 8; 2024-05-22T06:34:17,270 | ^~~ 2024-05-22T06:34:19,652 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Idnjheaders -I/usr/include/python3.11 -c matrix.c -o build/temp.linux-armv7l-cpython-311/matrix.o -fopenmp 2024-05-22T06:34:19,800 matrix.c: In function ‘ltdMatrix_popArrange’: 2024-05-22T06:34:19,801 matrix.c:538:16: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2024-05-22T06:34:19,802 538 | if(pos != n) { 2024-05-22T06:34:19,803 | ^~ 2024-05-22T06:34:20,745 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Idnjheaders -I/usr/include/python3.11 -c mman.c -o build/temp.linux-armv7l-cpython-311/mman.o -fopenmp 2024-05-22T06:34:20,801 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Idnjheaders -I/usr/include/python3.11 -c nj.c -o build/temp.linux-armv7l-cpython-311/nj.o -fopenmp 2024-05-22T06:34:20,933 nj.c: In function ‘initQ’: 2024-05-22T06:34:20,934 nj.c:243:13: warning: left shift count >= width of type [-Wshift-count-overflow] 2024-05-22T06:34:20,934 243 | pos <<= sizeof(unsigned) * 8; 2024-05-22T06:34:20,935 | ^~~ 2024-05-22T06:34:20,936 nj.c: In function ‘initQ_MN’: 2024-05-22T06:34:20,936 nj.c:358:13: warning: left shift count >= width of type [-Wshift-count-overflow] 2024-05-22T06:34:20,937 358 | pos <<= sizeof(unsigned) * 8; 2024-05-22T06:34:20,938 | ^~~ 2024-05-22T06:34:20,941 nj.c: In function ‘minD’: 2024-05-22T06:34:20,941 nj.c:559:13: warning: left shift count >= width of type [-Wshift-count-overflow] 2024-05-22T06:34:20,942 559 | pos <<= sizeof(unsigned) * 8; 2024-05-22T06:34:20,943 | ^~~ 2024-05-22T06:34:20,944 nj.c: In function ‘maxD’: 2024-05-22T06:34:20,944 nj.c:642:13: warning: left shift count >= width of type [-Wshift-count-overflow] 2024-05-22T06:34:20,945 642 | pos <<= sizeof(unsigned) * 8; 2024-05-22T06:34:20,946 | ^~~ 2024-05-22T06:34:20,948 nj.c: In function ‘minPair’: 2024-05-22T06:34:20,949 nj.c:826:13: warning: left shift count >= width of type [-Wshift-count-overflow] 2024-05-22T06:34:20,950 826 | pos <<= sizeof(unsigned) * 8; 2024-05-22T06:34:20,950 | ^~~ 2024-05-22T06:34:23,320 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Idnjheaders -I/usr/include/python3.11 -c nwck.c -o build/temp.linux-armv7l-cpython-311/nwck.o -fopenmp 2024-05-22T06:34:23,869 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Idnjheaders -I/usr/include/python3.11 -c pherror.c -o build/temp.linux-armv7l-cpython-311/pherror.o -fopenmp 2024-05-22T06:34:23,968 pherror.c: In function ‘cfread’: 2024-05-22T06:34:23,969 pherror.c:58:56: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2024-05-22T06:34:23,969 58 | } else if(nmemb == 0 || (nmemb == -1 && (errno & EAGAIN))) { 2024-05-22T06:34:23,970 | ^~ 2024-05-22T06:34:24,063 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Idnjheaders -I/usr/include/python3.11 -c phy.c -o build/temp.linux-armv7l-cpython-311/phy.o -fopenmp 2024-05-22T06:34:25,180 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Idnjheaders -I/usr/include/python3.11 -c pydnj.c -o build/temp.linux-armv7l-cpython-311/pydnj.o -fopenmp 2024-05-22T06:34:25,562 In file included from pydnj.c:11: 2024-05-22T06:34:25,563 dnjheaders/pherror.h:20: warning: "_XOPEN_SOURCE" redefined 2024-05-22T06:34:25,564 20 | #define _XOPEN_SOURCE 600 2024-05-22T06:34:25,564 | 2024-05-22T06:34:25,565 In file included from /usr/include/arm-linux-gnueabihf/bits/libc-header-start.h:33, 2024-05-22T06:34:25,566 from /usr/include/stdlib.h:26, 2024-05-22T06:34:25,566 from /usr/include/python3.11/Python.h:23, 2024-05-22T06:34:25,567 from pydnj.c:1: 2024-05-22T06:34:25,568 /usr/include/features.h:214: note: this is the location of the previous definition 2024-05-22T06:34:25,569 214 | # define _XOPEN_SOURCE 700 2024-05-22T06:34:25,570 | 2024-05-22T06:34:25,588 pydnj.c: In function ‘py_build’: 2024-05-22T06:34:25,588 pydnj.c:165:9: warning: implicit declaration of function ‘omp_get_num_procs’ [-Wimplicit-function-declaration] 2024-05-22T06:34:25,589 165 | p = omp_get_num_procs(); 2024-05-22T06:34:25,591 | ^~~~~~~~~~~~~~~~~ 2024-05-22T06:34:25,708 pydnj.c:169:5: warning: ‘free’ called on pointer returned from a mismatched allocation function [-Wmismatched-dealloc] 2024-05-22T06:34:25,709 169 | free(file); 2024-05-22T06:34:25,710 | ^~~~~~~~~~ 2024-05-22T06:34:25,710 pydnj.c:125:12: note: returned from ‘fopen’ 2024-05-22T06:34:25,711 125 | file = fopen(inputfilename, "r"); 2024-05-22T06:34:25,712 | ^~~~~~~~~~~~~~~~~~~~~~~~~ 2024-05-22T06:34:25,786 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Idnjheaders -I/usr/include/python3.11 -c qseqs.c -o build/temp.linux-armv7l-cpython-311/qseqs.o -fopenmp 2024-05-22T06:34:26,011 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Idnjheaders -I/usr/include/python3.11 -c str.c -o build/temp.linux-armv7l-cpython-311/str.o -fopenmp 2024-05-22T06:34:26,124 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Idnjheaders -I/usr/include/python3.11 -c tmp.c -o build/temp.linux-armv7l-cpython-311/tmp.o -fopenmp 2024-05-22T06:34:26,322 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Idnjheaders -I/usr/include/python3.11 -c vector.c -o build/temp.linux-armv7l-cpython-311/vector.o -fopenmp 2024-05-22T06:34:26,483 arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/bytescale.o build/temp.linux-armv7l-cpython-311/dnj.o build/temp.linux-armv7l-cpython-311/filebuff.o build/temp.linux-armv7l-cpython-311/hclust.o build/temp.linux-armv7l-cpython-311/matrix.o build/temp.linux-armv7l-cpython-311/mman.o build/temp.linux-armv7l-cpython-311/nj.o build/temp.linux-armv7l-cpython-311/nwck.o build/temp.linux-armv7l-cpython-311/pherror.o build/temp.linux-armv7l-cpython-311/phy.o build/temp.linux-armv7l-cpython-311/pydnj.o build/temp.linux-armv7l-cpython-311/qseqs.o build/temp.linux-armv7l-cpython-311/str.o build/temp.linux-armv7l-cpython-311/tmp.o build/temp.linux-armv7l-cpython-311/vector.o -L/usr/lib/arm-linux-gnueabihf -lz -o build/lib.linux-armv7l-cpython-311/dnj.cpython-311-arm-linux-gnueabihf.so -fopenmp 2024-05-22T06:34:26,667 /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. 2024-05-22T06:34:26,668 !! 2024-05-22T06:34:26,669 ******************************************************************************** 2024-05-22T06:34:26,669 Please avoid running ``setup.py`` directly. 2024-05-22T06:34:26,670 Instead, use pypa/build, pypa/installer or other 2024-05-22T06:34:26,671 standards-based tools. 2024-05-22T06:34:26,672 See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. 2024-05-22T06:34:26,673 ******************************************************************************** 2024-05-22T06:34:26,674 !! 2024-05-22T06:34:26,674 self.initialize_options() 2024-05-22T06:34:26,697 installing to build/bdist.linux-armv7l/wheel 2024-05-22T06:34:26,698 running install 2024-05-22T06:34:26,723 running install_lib 2024-05-22T06:34:26,750 creating build/bdist.linux-armv7l 2024-05-22T06:34:26,750 creating build/bdist.linux-armv7l/wheel 2024-05-22T06:34:26,752 copying build/lib.linux-armv7l-cpython-311/nj.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel 2024-05-22T06:34:26,757 copying build/lib.linux-armv7l-cpython-311/toolutils.py -> build/bdist.linux-armv7l/wheel 2024-05-22T06:34:26,760 copying build/lib.linux-armv7l-cpython-311/kssdtree.py -> build/bdist.linux-armv7l/wheel 2024-05-22T06:34:26,763 copying build/lib.linux-armv7l-cpython-311/dnj.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel 2024-05-22T06:34:26,774 copying build/lib.linux-armv7l-cpython-311/kssd.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel 2024-05-22T06:34:26,786 running install_egg_info 2024-05-22T06:34:26,824 Copying kssdtree.egg-info to build/bdist.linux-armv7l/wheel/kssdtree-1.1.2-py3.11.egg-info 2024-05-22T06:34:26,837 running install_scripts 2024-05-22T06:34:26,888 creating build/bdist.linux-armv7l/wheel/kssdtree-1.1.2.dist-info/WHEEL 2024-05-22T06:34:26,891 creating '/tmp/pip-wheel-lcxn02mk/kssdtree-1.1.2-cp311-cp311-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2024-05-22T06:34:26,958 adding 'dnj.cpython-311-arm-linux-gnueabihf.so' 2024-05-22T06:34:27,044 adding 'kssd.cpython-311-arm-linux-gnueabihf.so' 2024-05-22T06:34:27,049 adding 'kssdtree.py' 2024-05-22T06:34:27,071 adding 'nj.cpython-311-arm-linux-gnueabihf.so' 2024-05-22T06:34:27,074 adding 'toolutils.py' 2024-05-22T06:34:27,076 adding 'kssdtree-1.1.2.dist-info/METADATA' 2024-05-22T06:34:27,078 adding 'kssdtree-1.1.2.dist-info/WHEEL' 2024-05-22T06:34:27,079 adding 'kssdtree-1.1.2.dist-info/dependency_links.txt' 2024-05-22T06:34:27,081 adding 'kssdtree-1.1.2.dist-info/top_level.txt' 2024-05-22T06:34:27,082 adding 'kssdtree-1.1.2.dist-info/RECORD' 2024-05-22T06:34:27,092 removing build/bdist.linux-armv7l/wheel 2024-05-22T06:34:27,240 Building wheel for kssdtree (setup.py): finished with status 'done' 2024-05-22T06:34:27,246 Created wheel for kssdtree: filename=kssdtree-1.1.2-cp311-cp311-linux_armv7l.whl size=379667 sha256=146b572fde14b0d0770e1c1cd90870ad6db4af293ade814fed7a49e3857f1444 2024-05-22T06:34:27,247 Stored in directory: /tmp/pip-ephem-wheel-cache-57lnyip6/wheels/4c/be/91/57e35410c33aa987cdbc83e9fd3e6a07413d0d7aaba5e2d27c 2024-05-22T06:34:27,256 Successfully built kssdtree 2024-05-22T06:34:27,273 Removed build tracker: '/tmp/pip-build-tracker-v4unffwj'