2024-05-22T08:45:45,973 Created temporary directory: /tmp/pip-build-tracker-r3eti7fa 2024-05-22T08:45:45,974 Initialized build tracking at /tmp/pip-build-tracker-r3eti7fa 2024-05-22T08:45:45,975 Created build tracker: /tmp/pip-build-tracker-r3eti7fa 2024-05-22T08:45:45,975 Entered build tracker: /tmp/pip-build-tracker-r3eti7fa 2024-05-22T08:45:45,976 Created temporary directory: /tmp/pip-wheel-5vz5rchd 2024-05-22T08:45:45,979 Created temporary directory: /tmp/pip-ephem-wheel-cache-_ju3fg0k 2024-05-22T08:45:46,001 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2024-05-22T08:45:46,004 2 location(s) to search for versions of kssdtree: 2024-05-22T08:45:46,004 * https://pypi.org/simple/kssdtree/ 2024-05-22T08:45:46,004 * https://www.piwheels.org/simple/kssdtree/ 2024-05-22T08:45:46,005 Fetching project page and analyzing links: https://pypi.org/simple/kssdtree/ 2024-05-22T08:45:46,006 Getting page https://pypi.org/simple/kssdtree/ 2024-05-22T08:45:46,007 Found index url https://pypi.org/simple/ 2024-05-22T08:45:46,142 Fetched page https://pypi.org/simple/kssdtree/ as application/vnd.pypi.simple.v1+json 2024-05-22T08:45:46,144 Found link https://files.pythonhosted.org/packages/d5/1e/9e5c5945a44bb40002d1c259f734a531999fa6e87db89fe7c7ddcfc583cc/kssdtree-1.1.1.tar.gz (from https://pypi.org/simple/kssdtree/), version: 1.1.1 2024-05-22T08:45:46,145 Found link https://files.pythonhosted.org/packages/9a/4c/6516f734f5860e4b30f9091aaac5811663bfae72c4de4ae6566c89192767/kssdtree-1.1.2.tar.gz (from https://pypi.org/simple/kssdtree/), version: 1.1.2 2024-05-22T08:45:46,145 Found link https://files.pythonhosted.org/packages/a4/cd/f2954686c636e853cc3fda197c459195377b78288874cf7d68218a8bdbf4/kssdtree-1.1.3.tar.gz (from https://pypi.org/simple/kssdtree/), version: 1.1.3 2024-05-22T08:45:46,146 Fetching project page and analyzing links: https://www.piwheels.org/simple/kssdtree/ 2024-05-22T08:45:46,147 Getting page https://www.piwheels.org/simple/kssdtree/ 2024-05-22T08:45:46,148 Found index url https://www.piwheels.org/simple/ 2024-05-22T08:45:46,665 Fetched page https://www.piwheels.org/simple/kssdtree/ as text/html 2024-05-22T08:45:46,669 Skipping link: No binaries permitted for kssdtree: https://www.piwheels.org/simple/kssdtree/kssdtree-1.1.2-cp311-cp311-linux_armv6l.whl#sha256=146b572fde14b0d0770e1c1cd90870ad6db4af293ade814fed7a49e3857f1444 (from https://www.piwheels.org/simple/kssdtree/) 2024-05-22T08:45:46,670 Skipping link: No binaries permitted for kssdtree: https://www.piwheels.org/simple/kssdtree/kssdtree-1.1.2-cp311-cp311-linux_armv7l.whl#sha256=146b572fde14b0d0770e1c1cd90870ad6db4af293ade814fed7a49e3857f1444 (from https://www.piwheels.org/simple/kssdtree/) 2024-05-22T08:45:46,670 Skipping link: No binaries permitted for kssdtree: https://www.piwheels.org/simple/kssdtree/kssdtree-1.1.2-cp37-cp37m-linux_armv6l.whl#sha256=8c0cc1974033765d6eeefdb635a506385b5f38e00361bd6de47ff1a83b07e12a (from https://www.piwheels.org/simple/kssdtree/) 2024-05-22T08:45:46,671 Skipping link: No binaries permitted for kssdtree: https://www.piwheels.org/simple/kssdtree/kssdtree-1.1.2-cp37-cp37m-linux_armv7l.whl#sha256=8c0cc1974033765d6eeefdb635a506385b5f38e00361bd6de47ff1a83b07e12a (from https://www.piwheels.org/simple/kssdtree/) 2024-05-22T08:45:46,671 Skipping link: No binaries permitted for kssdtree: https://www.piwheels.org/simple/kssdtree/kssdtree-1.1.2-cp39-cp39-linux_armv6l.whl#sha256=9f3fe3d3b4b4bde8b34a8f964ebde72f1efcc7833b9a0b34f6b9c8ff3ed595db (from https://www.piwheels.org/simple/kssdtree/) 2024-05-22T08:45:46,672 Skipping link: No binaries permitted for kssdtree: https://www.piwheels.org/simple/kssdtree/kssdtree-1.1.2-cp39-cp39-linux_armv7l.whl#sha256=9f3fe3d3b4b4bde8b34a8f964ebde72f1efcc7833b9a0b34f6b9c8ff3ed595db (from https://www.piwheels.org/simple/kssdtree/) 2024-05-22T08:45:46,673 Skipping link: No binaries permitted for kssdtree: https://www.piwheels.org/simple/kssdtree/kssdtree-1.1.1-cp311-cp311-linux_armv6l.whl#sha256=29b8e7f4a3e60084db855e6d587231253771ad57184a3265922d659512e136fb (from https://www.piwheels.org/simple/kssdtree/) 2024-05-22T08:45:46,673 Skipping link: No binaries permitted for kssdtree: https://www.piwheels.org/simple/kssdtree/kssdtree-1.1.1-cp311-cp311-linux_armv7l.whl#sha256=29b8e7f4a3e60084db855e6d587231253771ad57184a3265922d659512e136fb (from https://www.piwheels.org/simple/kssdtree/) 2024-05-22T08:45:46,674 Skipping link: No binaries permitted for kssdtree: https://www.piwheels.org/simple/kssdtree/kssdtree-1.1.1-cp37-cp37m-linux_armv6l.whl#sha256=34b00b40f17a95b2cc5cbabd880acc2c56996457b0acd265cace6966c10b9575 (from https://www.piwheels.org/simple/kssdtree/) 2024-05-22T08:45:46,675 Skipping link: No binaries permitted for kssdtree: https://www.piwheels.org/simple/kssdtree/kssdtree-1.1.1-cp37-cp37m-linux_armv7l.whl#sha256=34b00b40f17a95b2cc5cbabd880acc2c56996457b0acd265cace6966c10b9575 (from https://www.piwheels.org/simple/kssdtree/) 2024-05-22T08:45:46,675 Skipping link: No binaries permitted for kssdtree: https://www.piwheels.org/simple/kssdtree/kssdtree-1.1.1-cp39-cp39-linux_armv6l.whl#sha256=04471408d60c00f568404b1ab01ca89567b36a1aa50ef6041aceef07ed1e45f4 (from https://www.piwheels.org/simple/kssdtree/) 2024-05-22T08:45:46,675 Skipping link: No binaries permitted for kssdtree: https://www.piwheels.org/simple/kssdtree/kssdtree-1.1.1-cp39-cp39-linux_armv7l.whl#sha256=04471408d60c00f568404b1ab01ca89567b36a1aa50ef6041aceef07ed1e45f4 (from https://www.piwheels.org/simple/kssdtree/) 2024-05-22T08:45:46,676 Skipping link: not a file: https://www.piwheels.org/simple/kssdtree/ 2024-05-22T08:45:46,677 Skipping link: not a file: https://pypi.org/simple/kssdtree/ 2024-05-22T08:45:46,697 Given no hashes to check 1 links for project 'kssdtree': discarding no candidates 2024-05-22T08:45:46,716 Collecting kssdtree==1.1.3 2024-05-22T08:45:46,719 Created temporary directory: /tmp/pip-unpack-znuuz_6y 2024-05-22T08:45:46,926 Downloading kssdtree-1.1.3.tar.gz (113 kB) 2024-05-22T08:45:47,165 Added kssdtree==1.1.3 from https://files.pythonhosted.org/packages/a4/cd/f2954686c636e853cc3fda197c459195377b78288874cf7d68218a8bdbf4/kssdtree-1.1.3.tar.gz to build tracker '/tmp/pip-build-tracker-r3eti7fa' 2024-05-22T08:45:47,167 Running setup.py (path:/tmp/pip-wheel-5vz5rchd/kssdtree_da9b0f631080452dba7f0fecce03bc26/setup.py) egg_info for package kssdtree 2024-05-22T08:45:47,168 Created temporary directory: /tmp/pip-pip-egg-info-fgkmsyq0 2024-05-22T08:45:47,169 Preparing metadata (setup.py): started 2024-05-22T08:45:47,171 Running command python setup.py egg_info 2024-05-22T08:45:48,086 running egg_info 2024-05-22T08:45:48,088 creating /tmp/pip-pip-egg-info-fgkmsyq0/kssdtree.egg-info 2024-05-22T08:45:48,114 writing /tmp/pip-pip-egg-info-fgkmsyq0/kssdtree.egg-info/PKG-INFO 2024-05-22T08:45:48,118 writing dependency_links to /tmp/pip-pip-egg-info-fgkmsyq0/kssdtree.egg-info/dependency_links.txt 2024-05-22T08:45:48,120 writing requirements to /tmp/pip-pip-egg-info-fgkmsyq0/kssdtree.egg-info/requires.txt 2024-05-22T08:45:48,121 writing top-level names to /tmp/pip-pip-egg-info-fgkmsyq0/kssdtree.egg-info/top_level.txt 2024-05-22T08:45:48,123 writing manifest file '/tmp/pip-pip-egg-info-fgkmsyq0/kssdtree.egg-info/SOURCES.txt' 2024-05-22T08:45:48,229 reading manifest file '/tmp/pip-pip-egg-info-fgkmsyq0/kssdtree.egg-info/SOURCES.txt' 2024-05-22T08:45:48,231 reading manifest template 'MANIFEST.in' 2024-05-22T08:45:48,249 writing manifest file '/tmp/pip-pip-egg-info-fgkmsyq0/kssdtree.egg-info/SOURCES.txt' 2024-05-22T08:45:48,356 Preparing metadata (setup.py): finished with status 'done' 2024-05-22T08:45:48,360 Source in /tmp/pip-wheel-5vz5rchd/kssdtree_da9b0f631080452dba7f0fecce03bc26 has version 1.1.3, which satisfies requirement kssdtree==1.1.3 from https://files.pythonhosted.org/packages/a4/cd/f2954686c636e853cc3fda197c459195377b78288874cf7d68218a8bdbf4/kssdtree-1.1.3.tar.gz 2024-05-22T08:45:48,361 Removed kssdtree==1.1.3 from https://files.pythonhosted.org/packages/a4/cd/f2954686c636e853cc3fda197c459195377b78288874cf7d68218a8bdbf4/kssdtree-1.1.3.tar.gz from build tracker '/tmp/pip-build-tracker-r3eti7fa' 2024-05-22T08:45:48,366 Created temporary directory: /tmp/pip-unpack-7os3yfdw 2024-05-22T08:45:48,367 Created temporary directory: /tmp/pip-unpack-fd7jc_um 2024-05-22T08:45:48,372 Building wheels for collected packages: kssdtree 2024-05-22T08:45:48,377 Created temporary directory: /tmp/pip-wheel-7vyebjvm 2024-05-22T08:45:48,377 Building wheel for kssdtree (setup.py): started 2024-05-22T08:45:48,378 Destination directory: /tmp/pip-wheel-7vyebjvm 2024-05-22T08:45:48,379 Running command python setup.py bdist_wheel 2024-05-22T08:45:49,514 running bdist_wheel 2024-05-22T08:45:49,647 running build 2024-05-22T08:45:49,648 running build_py 2024-05-22T08:45:49,676 creating build 2024-05-22T08:45:49,676 creating build/lib.linux-armv7l-cpython-311 2024-05-22T08:45:49,678 copying kssdtree.py -> build/lib.linux-armv7l-cpython-311 2024-05-22T08:45:49,681 copying toolutils.py -> build/lib.linux-armv7l-cpython-311 2024-05-22T08:45:49,684 running egg_info 2024-05-22T08:45:49,710 writing kssdtree.egg-info/PKG-INFO 2024-05-22T08:45:49,712 writing dependency_links to kssdtree.egg-info/dependency_links.txt 2024-05-22T08:45:49,714 writing requirements to kssdtree.egg-info/requires.txt 2024-05-22T08:45:49,715 writing top-level names to kssdtree.egg-info/top_level.txt 2024-05-22T08:45:49,746 reading manifest file 'kssdtree.egg-info/SOURCES.txt' 2024-05-22T08:45:49,749 reading manifest template 'MANIFEST.in' 2024-05-22T08:45:49,766 writing manifest file 'kssdtree.egg-info/SOURCES.txt' 2024-05-22T08:45:49,768 running build_ext 2024-05-22T08:45:50,235 building 'kssd' extension 2024-05-22T08:45:50,235 creating build/temp.linux-armv7l-cpython-311 2024-05-22T08:45:50,236 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ikssdheaders -I/usr/include/python3.11 -c co2mco.c -o build/temp.linux-armv7l-cpython-311/co2mco.o -fopenmp 2024-05-22T08:45:50,407 co2mco.c: In function ‘cdb_kmerf2kmerdb’: 2024-05-22T08:45:50,408 co2mco.c:109:32: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2024-05-22T08:45:50,409 109 | for (unsigned int i = 0; i < comp_num; i++) { 2024-05-22T08:45:50,410 | ^ 2024-05-22T08:45:50,413 co2mco.c: In function ‘co2unitllmco’: 2024-05-22T08:45:50,414 co2mco.c:191:32: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2024-05-22T08:45:50,415 191 | for (unsigned int i = 0; i < bin_sz; i++) { 2024-05-22T08:45:50,415 | ^ 2024-05-22T08:45:51,119 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ikssdheaders -I/usr/include/python3.11 -c command_composite.c -o build/temp.linux-armv7l-cpython-311/command_composite.o -fopenmp 2024-05-22T08:45:51,494 command_composite.c: In function ‘get_species_abundance’: 2024-05-22T08:45:51,495 command_composite.c:32:72: warning: ‘%s’ directive argument is null [-Wformat-overflow=] 2024-05-22T08:45:51,495 32 | if (ref_dstat_fpath == NULL) fprintf(stderr, "cannot find %s under %s ", co_dstat, ref_dstat_fpath); 2024-05-22T08:45:51,496 | ^~ 2024-05-22T08:45:51,497 command_composite.c:34:72: warning: ‘%s’ directive argument is null [-Wformat-overflow=] 2024-05-22T08:45:51,497 34 | if (qry_dstat_fpath == NULL) fprintf(stderr, "cannot find %s under %s ", co_dstat, qry_dstat_fpath); 2024-05-22T08:45:51,498 | ^~ 2024-05-22T08:45:51,498 command_composite.c:64:37: warning: ‘.’ directive writing 1 byte into a region of size between 0 and 255 [-Wformat-overflow=] 2024-05-22T08:45:51,499 64 | sprintf(tmpfname, "%s/%s.%d", composite_opt->refdir, skch_prefix, c); 2024-05-22T08:45:51,499 | ^ 2024-05-22T08:45:51,501 command_composite.c:64:31: note: directive argument in the range [-2147483644, 2147483646] 2024-05-22T08:45:51,501 64 | sprintf(tmpfname, "%s/%s.%d", composite_opt->refdir, skch_prefix, c); 2024-05-22T08:45:51,502 | ^~~~~~~~~~ 2024-05-22T08:45:51,502 command_composite.c:64:13: note: ‘sprintf’ output 4 or more bytes (assuming 269) into a destination of size 256 2024-05-22T08:45:51,502 64 | sprintf(tmpfname, "%s/%s.%d", composite_opt->refdir, skch_prefix, c); 2024-05-22T08:45:51,503 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-05-22T08:45:51,503 command_composite.c:70:37: warning: ‘.’ directive writing 1 byte into a region of size between 0 and 255 [-Wformat-overflow=] 2024-05-22T08:45:51,504 70 | sprintf(tmpfname, "%s/%s.%d", composite_opt->refdir, idx_prefix, c); 2024-05-22T08:45:51,504 | ^ 2024-05-22T08:45:51,505 command_composite.c:70:31: note: directive argument in the range [-2147483644, 2147483646] 2024-05-22T08:45:51,505 70 | sprintf(tmpfname, "%s/%s.%d", composite_opt->refdir, idx_prefix, c); 2024-05-22T08:45:51,506 | ^~~~~~~~~~ 2024-05-22T08:45:51,506 command_composite.c:70:13: note: ‘sprintf’ output 4 or more bytes (assuming 269) into a destination of size 256 2024-05-22T08:45:51,507 70 | sprintf(tmpfname, "%s/%s.%d", composite_opt->refdir, idx_prefix, c); 2024-05-22T08:45:51,507 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-05-22T08:45:51,508 command_composite.c:76:37: warning: ‘.’ directive writing 1 byte into a region of size between 0 and 255 [-Wformat-overflow=] 2024-05-22T08:45:51,509 76 | sprintf(tmpfname, "%s/%s.%d", composite_opt->qrydir, skch_prefix, c); 2024-05-22T08:45:51,509 | ^ 2024-05-22T08:45:51,510 command_composite.c:76:31: note: directive argument in the range [-2147483644, 2147483646] 2024-05-22T08:45:51,510 76 | sprintf(tmpfname, "%s/%s.%d", composite_opt->qrydir, skch_prefix, c); 2024-05-22T08:45:51,511 | ^~~~~~~~~~ 2024-05-22T08:45:51,511 command_composite.c:76:13: note: ‘sprintf’ output 4 or more bytes (assuming 269) into a destination of size 256 2024-05-22T08:45:51,512 76 | sprintf(tmpfname, "%s/%s.%d", composite_opt->qrydir, skch_prefix, c); 2024-05-22T08:45:51,512 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-05-22T08:45:51,513 command_composite.c:82:37: warning: ‘.’ directive writing 1 byte into a region of size between 0 and 255 [-Wformat-overflow=] 2024-05-22T08:45:51,513 82 | sprintf(tmpfname, "%s/%s.%d", composite_opt->qrydir, idx_prefix, c); 2024-05-22T08:45:51,514 | ^ 2024-05-22T08:45:51,514 command_composite.c:82:31: note: directive argument in the range [-2147483644, 2147483646] 2024-05-22T08:45:51,515 82 | sprintf(tmpfname, "%s/%s.%d", composite_opt->qrydir, idx_prefix, c); 2024-05-22T08:45:51,516 | ^~~~~~~~~~ 2024-05-22T08:45:51,516 command_composite.c:82:13: note: ‘sprintf’ output 4 or more bytes (assuming 269) into a destination of size 256 2024-05-22T08:45:51,517 82 | sprintf(tmpfname, "%s/%s.%d", composite_opt->qrydir, idx_prefix, c); 2024-05-22T08:45:51,517 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-05-22T08:45:51,518 command_composite.c:88:37: warning: ‘.’ directive writing 1 byte into a region of size between 0 and 255 [-Wformat-overflow=] 2024-05-22T08:45:51,518 88 | sprintf(tmpfname, "%s/%s.%d.a", composite_opt->qrydir, skch_prefix, c); 2024-05-22T08:45:51,519 | ^ 2024-05-22T08:45:51,520 command_composite.c:88:31: note: directive argument in the range [-2147483644, 2147483646] 2024-05-22T08:45:51,521 88 | sprintf(tmpfname, "%s/%s.%d.a", composite_opt->qrydir, skch_prefix, c); 2024-05-22T08:45:51,521 | ^~~~~~~~~~~~ 2024-05-22T08:45:51,522 command_composite.c:88:13: note: ‘sprintf’ output 6 or more bytes (assuming 271) into a destination of size 256 2024-05-22T08:45:51,522 88 | sprintf(tmpfname, "%s/%s.%d.a", composite_opt->qrydir, skch_prefix, c); 2024-05-22T08:45:51,523 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-05-22T08:45:51,766 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ikssdheaders -I/usr/include/python3.11 -c command_dist.c -o build/temp.linux-armv7l-cpython-311/command_dist.o -fopenmp 2024-05-22T08:45:51,997 command_dist.c: In function ‘mco_cbd_co_dist’: 2024-05-22T08:45:51,999 command_dist.c:678:27: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 2024-05-22T08:45:51,999 678 | printf("disf_sz=%lu\trefnum=%d\tqrynum=%d\tnum_mapping_distf=%dbnum_infile=%d\t\t%lu\t%lu\tflag1:Ok\n", 2024-05-22T08:45:52,000 | ~~^ 2024-05-22T08:45:52,000 | | 2024-05-22T08:45:52,001 | long unsigned int 2024-05-22T08:45:52,001 | %u 2024-05-22T08:45:52,002 679 | disf_sz, mco_dstat_readin.infile_num, co_dstat_readin.infile_num, num_mapping_distf, bnum_infile, 2024-05-22T08:45:52,002 | ~~~~~~~ 2024-05-22T08:45:52,003 | | 2024-05-22T08:45:52,003 | size_t {aka unsigned int} 2024-05-22T08:45:52,004 command_dist.c:678:92: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 7 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 2024-05-22T08:45:52,005 678 | printf("disf_sz=%lu\trefnum=%d\tqrynum=%d\tnum_mapping_distf=%dbnum_infile=%d\t\t%lu\t%lu\tflag1:Ok\n", 2024-05-22T08:45:52,006 | ~~^ 2024-05-22T08:45:52,007 | | 2024-05-22T08:45:52,007 | long unsigned int 2024-05-22T08:45:52,008 | %u 2024-05-22T08:45:52,009 679 | disf_sz, mco_dstat_readin.infile_num, co_dstat_readin.infile_num, num_mapping_distf, bnum_infile, 2024-05-22T08:45:52,009 680 | maplength, (size_t) b * unitsz_distf_mapped); 2024-05-22T08:45:52,010 | ~~~~~~~~~ 2024-05-22T08:45:52,011 | | 2024-05-22T08:45:52,011 | size_t {aka unsigned int} 2024-05-22T08:45:52,012 command_dist.c:678:97: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 8 has type ‘unsigned int’ [-Wformat=] 2024-05-22T08:45:52,013 678 | printf("disf_sz=%lu\trefnum=%d\tqrynum=%d\tnum_mapping_distf=%dbnum_infile=%d\t\t%lu\t%lu\tflag1:Ok\n", 2024-05-22T08:45:52,013 | ~~^ 2024-05-22T08:45:52,014 | | 2024-05-22T08:45:52,015 | long unsigned int 2024-05-22T08:45:52,016 | %u 2024-05-22T08:45:52,017 679 | disf_sz, mco_dstat_readin.infile_num, co_dstat_readin.infile_num, num_mapping_distf, bnum_infile, 2024-05-22T08:45:52,017 680 | maplength, (size_t) b * unitsz_distf_mapped); 2024-05-22T08:45:52,018 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-05-22T08:45:52,018 | | 2024-05-22T08:45:52,019 | unsigned int 2024-05-22T08:45:52,019 command_dist.c:716:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2024-05-22T08:45:52,020 716 | for (int n = 0; n < fco_pos[k + 1] - fco_pos[k]; n++) { 2024-05-22T08:45:52,020 | ^ 2024-05-22T08:45:52,022 command_dist.c: In function ‘mco_cbdco_nobin_dist’: 2024-05-22T08:45:52,024 command_dist.c:864:27: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 2024-05-22T08:45:52,024 864 | printf("disf_sz=%lu\trefnum=%d\tqrynum=%d\tnum_mapping_distf=%d\tbatch_qrynum=%d\t%lu\t%lu\n", disf_sz, 2024-05-22T08:45:52,025 | ~~^ ~~~~~~~ 2024-05-22T08:45:52,025 | | | 2024-05-22T08:45:52,026 | long unsigned int size_t {aka unsigned int} 2024-05-22T08:45:52,026 | %u 2024-05-22T08:45:52,027 command_dist.c:864:93: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 7 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 2024-05-22T08:45:52,027 864 | printf("disf_sz=%lu\trefnum=%d\tqrynum=%d\tnum_mapping_distf=%d\tbatch_qrynum=%d\t%lu\t%lu\n", disf_sz, 2024-05-22T08:45:52,028 | ~~^ 2024-05-22T08:45:52,028 | | 2024-05-22T08:45:52,029 | long unsigned int 2024-05-22T08:45:52,030 | %u 2024-05-22T08:45:52,030 865 | mco_dstat_readin.infile_num, co_dstat_readin.infile_num, num_mapping_distf, bnum_infile, maplength, 2024-05-22T08:45:52,031 | ~~~~~~~~~ 2024-05-22T08:45:52,032 | | 2024-05-22T08:45:52,033 | size_t {aka unsigned int} 2024-05-22T08:45:52,033 command_dist.c:864:98: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 8 has type ‘unsigned int’ [-Wformat=] 2024-05-22T08:45:52,034 864 | printf("disf_sz=%lu\trefnum=%d\tqrynum=%d\tnum_mapping_distf=%d\tbatch_qrynum=%d\t%lu\t%lu\n", disf_sz, 2024-05-22T08:45:52,034 | ~~^ 2024-05-22T08:45:52,035 | | 2024-05-22T08:45:52,036 | long unsigned int 2024-05-22T08:45:52,036 | %u 2024-05-22T08:45:52,037 865 | mco_dstat_readin.infile_num, co_dstat_readin.infile_num, num_mapping_distf, bnum_infile, maplength, 2024-05-22T08:45:52,037 866 | (size_t) b * unitsz_distf_mapped); 2024-05-22T08:45:52,038 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-05-22T08:45:52,038 | | 2024-05-22T08:45:52,039 | unsigned int 2024-05-22T08:45:52,040 command_dist.c:811:13: warning: unused variable ‘fco_pos’ [-Wunused-variable] 2024-05-22T08:45:52,040 811 | size_t *fco_pos = malloc(sizeof(size_t) * (co_dstat_readin.infile_num + 1)); 2024-05-22T08:45:52,041 | ^~~~~~~ 2024-05-22T08:45:52,041 command_dist.c:810:17: warning: unused variable ‘cbd_fcode_stat’ [-Wunused-variable] 2024-05-22T08:45:52,042 810 | struct stat cbd_fcode_stat; 2024-05-22T08:45:52,042 | ^~~~~~~~~~~~~~ 2024-05-22T08:45:52,043 command_dist.c:809:31: warning: unused variable ‘cbd_fcode_comp_index_fp’ [-Wunused-variable] 2024-05-22T08:45:52,043 809 | FILE *cbd_fcode_comp_fp, *cbd_fcode_comp_index_fp; 2024-05-22T08:45:52,044 | ^~~~~~~~~~~~~~~~~~~~~~~ 2024-05-22T08:45:52,044 command_dist.c:809:11: warning: unused variable ‘cbd_fcode_comp_fp’ [-Wunused-variable] 2024-05-22T08:45:52,045 809 | FILE *cbd_fcode_comp_fp, *cbd_fcode_comp_index_fp; 2024-05-22T08:45:52,045 | ^~~~~~~~~~~~~~~~~ 2024-05-22T08:45:52,048 command_dist.c: In function ‘mco_cbd_koc_compatible_dist’: 2024-05-22T08:45:52,051 command_dist.c:1019:27: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 2024-05-22T08:45:52,051 1019 | printf("disf_sz=%lu\trefnum=%d\tqrynum=%d\tnum_mapping_distf=%dbnum_infile=%d\t\t%lu\t%lu\tflag1:Ok\n", 2024-05-22T08:45:52,052 | ~~^ 2024-05-22T08:45:52,052 | | 2024-05-22T08:45:52,053 | long unsigned int 2024-05-22T08:45:52,053 | %u 2024-05-22T08:45:52,054 1020 | disf_sz, mco_dstat_readin.infile_num, co_dstat_readin.infile_num, num_mapping_distf, bnum_infile, 2024-05-22T08:45:52,055 | ~~~~~~~ 2024-05-22T08:45:52,055 | | 2024-05-22T08:45:52,056 | size_t {aka unsigned int} 2024-05-22T08:45:52,057 command_dist.c:1019:92: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 7 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 2024-05-22T08:45:52,057 1019 | printf("disf_sz=%lu\trefnum=%d\tqrynum=%d\tnum_mapping_distf=%dbnum_infile=%d\t\t%lu\t%lu\tflag1:Ok\n", 2024-05-22T08:45:52,058 | ~~^ 2024-05-22T08:45:52,059 | | 2024-05-22T08:45:52,059 | long unsigned int 2024-05-22T08:45:52,060 | %u 2024-05-22T08:45:52,060 1020 | disf_sz, mco_dstat_readin.infile_num, co_dstat_readin.infile_num, num_mapping_distf, bnum_infile, 2024-05-22T08:45:52,061 1021 | maplength, (size_t) b * unitsz_distf_mapped); 2024-05-22T08:45:52,062 | ~~~~~~~~~ 2024-05-22T08:45:52,062 | | 2024-05-22T08:45:52,063 | size_t {aka unsigned int} 2024-05-22T08:45:52,064 command_dist.c:1019:97: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 8 has type ‘unsigned int’ [-Wformat=] 2024-05-22T08:45:52,065 1019 | printf("disf_sz=%lu\trefnum=%d\tqrynum=%d\tnum_mapping_distf=%dbnum_infile=%d\t\t%lu\t%lu\tflag1:Ok\n", 2024-05-22T08:45:52,066 | ~~^ 2024-05-22T08:45:52,066 | | 2024-05-22T08:45:52,067 | long unsigned int 2024-05-22T08:45:52,067 | %u 2024-05-22T08:45:52,068 1020 | disf_sz, mco_dstat_readin.infile_num, co_dstat_readin.infile_num, num_mapping_distf, bnum_infile, 2024-05-22T08:45:52,068 1021 | maplength, (size_t) b * unitsz_distf_mapped); 2024-05-22T08:45:52,069 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-05-22T08:45:52,069 | | 2024-05-22T08:45:52,070 | unsigned int 2024-05-22T08:45:52,070 command_dist.c:1035:27: warning: comparison of integer expressions of different signedness: ‘__off_t’ {aka ‘long int’} and ‘unsigned int’ [-Wsign-compare] 2024-05-22T08:45:52,071 1035 | if (s.st_size > sizeof(gidobj_t) * MCOMM_SZ) mco_mem = (gidobj_t *) realloc(mco_mem, s.st_size); 2024-05-22T08:45:52,071 | ^ 2024-05-22T08:45:52,072 command_dist.c: In function ‘mco_co_dist_core’: 2024-05-22T08:45:52,073 command_dist.c:1117:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘gidobj_t’ {aka ‘unsigned int’} [-Wsign-compare] 2024-05-22T08:45:52,073 1117 | for (int k = 1; k < unit_arrmco[ind][0] + 1; k++) { 2024-05-22T08:45:52,074 | ^ 2024-05-22T08:45:52,079 command_dist.c: In function ‘koc_dist_print_nobin’: 2024-05-22T08:45:52,081 command_dist.c:1240:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2024-05-22T08:45:52,081 1240 | for (int rid = 0; rid < ref_num; rid++) 2024-05-22T08:45:52,082 | ^ 2024-05-22T08:45:52,084 command_dist.c:1246:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2024-05-22T08:45:52,084 1246 | for (int rid = 0; rid < ref_num; rid++) { 2024-05-22T08:45:52,085 | ^ 2024-05-22T08:45:52,091 command_dist.c: In function ‘dist_print_nobin’: 2024-05-22T08:45:52,092 command_dist.c:1336:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2024-05-22T08:45:52,093 1336 | if ((N_max > NREF) || (N_max > ref_num)) { 2024-05-22T08:45:52,094 | ^ 2024-05-22T08:45:52,096 command_dist.c:1357:39: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2024-05-22T08:45:52,097 1357 | for (int rid = 0; rid < ref_num; rid++) { 2024-05-22T08:45:52,097 | ^ 2024-05-22T08:45:52,099 command_dist.c:1383:39: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2024-05-22T08:45:52,100 1383 | for (int rid = 0; rid < ref_num; rid++) 2024-05-22T08:45:52,101 | ^ 2024-05-22T08:45:52,467 command_dist.c: In function ‘run_stageI._omp_fn.1’: 2024-05-22T08:45:52,468 command_dist.c:404:21: warning: ‘com_abund_fp’ may be used uninitialized [-Wmaybe-uninitialized] 2024-05-22T08:45:52,468 404 | fwrite(tmp_mem, sizeof(unsigned short) * tmpkmerct, 1, com_abund_fp); 2024-05-22T08:45:52,469 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-05-22T08:45:52,469 command_dist.c:376:40: note: ‘com_abund_fp’ was declared here 2024-05-22T08:45:52,470 376 | FILE *com_cofp, *indexfp, *com_abund_fp; 2024-05-22T08:45:52,470 | ^~~~~~~~~~~~ 2024-05-22T08:45:53,306 command_dist.c: In function ‘get_dim_shuffle’: 2024-05-22T08:45:53,307 command_dist.c:268:36: warning: ‘%s’ directive writing up to 264 bytes into a region of size 256 [-Wformat-overflow=] 2024-05-22T08:45:53,307 268 | sprintf(shuf_infile_name, "%s.shuf", shuf_infile_name_prefix); 2024-05-22T08:45:53,308 | ^~ ~~~~~~~~~~~~~~~~~~~~~~~ 2024-05-22T08:45:53,308 command_dist.c:268:9: note: ‘sprintf’ output between 6 and 270 bytes into a destination of size 256 2024-05-22T08:45:53,309 268 | sprintf(shuf_infile_name, "%s.shuf", shuf_infile_name_prefix); 2024-05-22T08:45:53,309 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-05-22T08:45:54,207 command_dist.c: In function ‘mco_cbd_co_dist’: 2024-05-22T08:45:54,208 command_dist.c:597:37: warning: ‘%s’ directive writing 13 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2024-05-22T08:45:54,208 597 | sprintf(refmco_dstat_fpath, "%s/%s", refmco_dname, mco_dstat); 2024-05-22T08:45:54,209 | ^~ ~~~~~~~~~ 2024-05-22T08:45:54,210 command_dist.c:597:5: note: ‘sprintf’ output between 15 and 270 bytes into a destination of size 256 2024-05-22T08:45:54,210 597 | sprintf(refmco_dstat_fpath, "%s/%s", refmco_dname, mco_dstat); 2024-05-22T08:45:54,211 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-05-22T08:45:54,212 command_dist.c:626:25: warning: ‘/sharedk_ct.dat’ directive writing 15 bytes into a region of size between 1 and 256 [-Wformat-overflow=] 2024-05-22T08:45:54,212 626 | sprintf(onedist, "%s/sharedk_ct.dat", distout_dir); 2024-05-22T08:45:54,213 | ^~~~~~~~~~~~~~~ 2024-05-22T08:45:54,214 command_dist.c:626:5: note: ‘sprintf’ output between 16 and 271 bytes into a destination of size 256 2024-05-22T08:45:54,214 626 | sprintf(onedist, "%s/sharedk_ct.dat", distout_dir); 2024-05-22T08:45:54,215 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-05-22T08:45:54,215 command_dist.c:682:41: warning: ‘/mco.index.’ directive writing 11 bytes into a region of size between 1 and 256 [-Wformat-overflow=] 2024-05-22T08:45:54,216 682 | sprintf(mco_index_fcode, "%s/mco.index.%d", refmco_dname, j); 2024-05-22T08:45:54,217 | ^~~~~~~~~~~ 2024-05-22T08:45:54,217 command_dist.c:682:38: note: directive argument in the range [-2147483644, 2147483646] 2024-05-22T08:45:54,218 682 | sprintf(mco_index_fcode, "%s/mco.index.%d", refmco_dname, j); 2024-05-22T08:45:54,218 | ^~~~~~~~~~~~~~~~~ 2024-05-22T08:45:54,219 command_dist.c:682:13: note: ‘sprintf’ output between 13 and 278 bytes into a destination of size 256 2024-05-22T08:45:54,220 682 | sprintf(mco_index_fcode, "%s/mco.index.%d", refmco_dname, j); 2024-05-22T08:45:54,220 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-05-22T08:45:54,221 command_dist.c:683:35: warning: ‘/mco.’ directive writing 5 bytes into a region of size between 1 and 256 [-Wformat-overflow=] 2024-05-22T08:45:54,222 683 | sprintf(mco_fcode, "%s/mco.%d", refmco_dname, j); 2024-05-22T08:45:54,222 | ^~~~~ 2024-05-22T08:45:54,223 command_dist.c:683:32: note: directive argument in the range [-2147483644, 2147483646] 2024-05-22T08:45:54,224 683 | sprintf(mco_fcode, "%s/mco.%d", refmco_dname, j); 2024-05-22T08:45:54,224 | ^~~~~~~~~~~ 2024-05-22T08:45:54,225 command_dist.c:683:13: note: ‘sprintf’ output between 7 and 272 bytes into a destination of size 256 2024-05-22T08:45:54,225 683 | sprintf(mco_fcode, "%s/mco.%d", refmco_dname, j); 2024-05-22T08:45:54,226 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-05-22T08:45:54,459 command_dist.c: In function ‘mco_cbdco_nobin_dist’: 2024-05-22T08:45:54,460 command_dist.c:764:37: warning: ‘%s’ directive writing 13 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2024-05-22T08:45:54,460 764 | sprintf(refmco_dstat_fpath, "%s/%s", refmco_dname, mco_dstat); 2024-05-22T08:45:54,461 | ^~ ~~~~~~~~~ 2024-05-22T08:45:54,461 command_dist.c:764:5: note: ‘sprintf’ output between 15 and 270 bytes into a destination of size 256 2024-05-22T08:45:54,462 764 | sprintf(refmco_dstat_fpath, "%s/%s", refmco_dname, mco_dstat); 2024-05-22T08:45:54,462 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-05-22T08:45:54,462 command_dist.c:791:25: warning: ‘/sharedk_ct.dat’ directive writing 15 bytes into a region of size between 1 and 256 [-Wformat-overflow=] 2024-05-22T08:45:54,463 791 | sprintf(onedist, "%s/sharedk_ct.dat", distout_dir); 2024-05-22T08:45:54,463 | ^~~~~~~~~~~~~~~ 2024-05-22T08:45:54,464 command_dist.c:791:5: note: ‘sprintf’ output between 16 and 271 bytes into a destination of size 256 2024-05-22T08:45:54,465 791 | sprintf(onedist, "%s/sharedk_ct.dat", distout_dir); 2024-05-22T08:45:54,465 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-05-22T08:45:54,466 command_dist.c:824:23: warning: ‘/distance.out’ directive writing 13 bytes into a region of size between 1 and 256 [-Wformat-overflow=] 2024-05-22T08:45:54,467 824 | sprintf(distf, "%s/distance.out", distout_dir); 2024-05-22T08:45:54,467 | ^~~~~~~~~~~~~ 2024-05-22T08:45:54,468 command_dist.c:824:5: note: ‘sprintf’ output between 14 and 269 bytes into a destination of size 256 2024-05-22T08:45:54,468 824 | sprintf(distf, "%s/distance.out", distout_dir); 2024-05-22T08:45:54,469 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-05-22T08:45:54,470 command_dist.c:850:39: warning: ‘.’ directive writing 1 byte into a region of size between 0 and 255 [-Wformat-overflow=] 2024-05-22T08:45:54,470 850 | sprintf(mco_index_fcode, "%s/%s.%d", refmco_dname, mco_idx_prefix, j); 2024-05-22T08:45:54,471 | ^ 2024-05-22T08:45:54,472 command_dist.c:850:33: note: directive argument in the range [0, 536870912] 2024-05-22T08:45:54,472 850 | sprintf(mco_index_fcode, "%s/%s.%d", refmco_dname, mco_idx_prefix, j); 2024-05-22T08:45:54,473 | ^~~~~~~~~~ 2024-05-22T08:45:54,474 command_dist.c:850:8: note: ‘sprintf’ output 4 or more bytes (assuming 267) into a destination of size 256 2024-05-22T08:45:54,474 850 | sprintf(mco_index_fcode, "%s/%s.%d", refmco_dname, mco_idx_prefix, j); 2024-05-22T08:45:54,475 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-05-22T08:45:54,475 command_dist.c:852:34: warning: ‘.’ directive writing 1 byte into a region of size between 0 and 255 [-Wformat-overflow=] 2024-05-22T08:45:54,476 852 | sprintf(mco_fcode, "%s/%s.%d", refmco_dname, mco_gids_prefix, j); 2024-05-22T08:45:54,477 | ^ 2024-05-22T08:45:54,478 command_dist.c:852:28: note: directive argument in the range [0, 536870912] 2024-05-22T08:45:54,478 852 | sprintf(mco_fcode, "%s/%s.%d", refmco_dname, mco_gids_prefix, j); 2024-05-22T08:45:54,479 | ^~~~~~~~~~ 2024-05-22T08:45:54,480 command_dist.c:852:9: note: ‘sprintf’ output 4 or more bytes (assuming 267) into a destination of size 256 2024-05-22T08:45:54,480 852 | sprintf(mco_fcode, "%s/%s.%d", refmco_dname, mco_gids_prefix, j); 2024-05-22T08:45:54,481 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-05-22T08:45:54,738 command_dist.c: In function ‘mco_cbd_koc_compatible_dist’: 2024-05-22T08:45:54,739 command_dist.c:928:37: warning: ‘%s’ directive writing 13 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2024-05-22T08:45:54,740 928 | sprintf(refmco_dstat_fpath, "%s/%s", refmco_dname, mco_dstat); 2024-05-22T08:45:54,740 | ^~ ~~~~~~~~~ 2024-05-22T08:45:54,741 command_dist.c:928:5: note: ‘sprintf’ output between 15 and 270 bytes into a destination of size 256 2024-05-22T08:45:54,741 928 | sprintf(refmco_dstat_fpath, "%s/%s", refmco_dname, mco_dstat); 2024-05-22T08:45:54,742 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-05-22T08:45:54,742 command_dist.c:957:25: warning: ‘/sharedk_ct.dat’ directive writing 15 bytes into a region of size between 1 and 256 [-Wformat-overflow=] 2024-05-22T08:45:54,742 957 | sprintf(onedist, "%s/sharedk_ct.dat", distout_dir); 2024-05-22T08:45:54,743 | ^~~~~~~~~~~~~~~ 2024-05-22T08:45:54,743 command_dist.c:957:5: note: ‘sprintf’ output between 16 and 271 bytes into a destination of size 256 2024-05-22T08:45:54,744 957 | sprintf(onedist, "%s/sharedk_ct.dat", distout_dir); 2024-05-22T08:45:54,744 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-05-22T08:45:54,745 command_dist.c:991:23: warning: ‘/distance.out’ directive writing 13 bytes into a region of size between 1 and 256 [-Wformat-overflow=] 2024-05-22T08:45:54,745 991 | sprintf(distf, "%s/distance.out", distout_dir); 2024-05-22T08:45:54,746 | ^~~~~~~~~~~~~ 2024-05-22T08:45:54,747 command_dist.c:991:5: note: ‘sprintf’ output between 14 and 269 bytes into a destination of size 256 2024-05-22T08:45:54,747 991 | sprintf(distf, "%s/distance.out", distout_dir); 2024-05-22T08:45:54,748 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-05-22T08:45:54,749 command_dist.c:1023:41: warning: ‘/mco.index.’ directive writing 11 bytes into a region of size between 1 and 256 [-Wformat-overflow=] 2024-05-22T08:45:54,749 1023 | sprintf(mco_index_fcode, "%s/mco.index.%d", refmco_dname, j); 2024-05-22T08:45:54,750 | ^~~~~~~~~~~ 2024-05-22T08:45:54,751 command_dist.c:1023:38: note: directive argument in the range [-2147483644, 2147483646] 2024-05-22T08:45:54,751 1023 | sprintf(mco_index_fcode, "%s/mco.index.%d", refmco_dname, j); 2024-05-22T08:45:54,752 | ^~~~~~~~~~~~~~~~~ 2024-05-22T08:45:54,752 command_dist.c:1023:13: note: ‘sprintf’ output between 13 and 278 bytes into a destination of size 256 2024-05-22T08:45:54,753 1023 | sprintf(mco_index_fcode, "%s/mco.index.%d", refmco_dname, j); 2024-05-22T08:45:54,753 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-05-22T08:45:54,754 command_dist.c:1024:35: warning: ‘/mco.’ directive writing 5 bytes into a region of size between 1 and 256 [-Wformat-overflow=] 2024-05-22T08:45:54,755 1024 | sprintf(mco_fcode, "%s/mco.%d", refmco_dname, j); 2024-05-22T08:45:54,755 | ^~~~~ 2024-05-22T08:45:54,756 command_dist.c:1024:32: note: directive argument in the range [-2147483644, 2147483646] 2024-05-22T08:45:54,757 1024 | sprintf(mco_fcode, "%s/mco.%d", refmco_dname, j); 2024-05-22T08:45:54,758 | ^~~~~~~~~~~ 2024-05-22T08:45:54,758 command_dist.c:1024:13: note: ‘sprintf’ output between 7 and 272 bytes into a destination of size 256 2024-05-22T08:45:54,759 1024 | sprintf(mco_fcode, "%s/mco.%d", refmco_dname, j); 2024-05-22T08:45:54,759 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-05-22T08:45:55,029 command_dist.c: In function ‘combine_queries’: 2024-05-22T08:45:55,031 command_dist.c:1493:41: warning: ‘sprintf’ may write a terminating nul past the end of the destination [-Wformat-overflow=] 2024-05-22T08:45:55,031 1493 | sprintf(one_kmerct_list_name, "%s/%s", co_dir, kmerct_list_fname); 2024-05-22T08:45:55,032 | ^ 2024-05-22T08:45:55,033 command_dist.c:1493:5: note: ‘sprintf’ output 2 or more bytes (assuming 257) into a destination of size 256 2024-05-22T08:45:55,033 1493 | sprintf(one_kmerct_list_name, "%s/%s", co_dir, kmerct_list_fname); 2024-05-22T08:45:55,034 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-05-22T08:45:55,035 command_dist.c:1500:40: warning: ‘sprintf’ may write a terminating nul past the end of the destination [-Wformat-overflow=] 2024-05-22T08:45:55,035 1500 | sprintf(one_infilename_name, "%s/%s", co_dir, fname_fname); 2024-05-22T08:45:55,036 | ^ 2024-05-22T08:45:55,037 command_dist.c:1500:5: note: ‘sprintf’ output 2 or more bytes (assuming 257) into a destination of size 256 2024-05-22T08:45:55,037 1500 | sprintf(one_infilename_name, "%s/%s", co_dir, fname_fname); 2024-05-22T08:45:55,038 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-05-22T08:45:55,040 command_dist.c:1604:32: warning: ‘%s’ directive writing 12 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2024-05-22T08:45:55,041 1604 | sprintf(one_stat_name, "%s/%s", co_dir, co_dstat); 2024-05-22T08:45:55,041 | ^~ ~~~~~~~~ 2024-05-22T08:45:55,042 command_dist.c:1604:5: note: ‘sprintf’ output between 14 and 269 bytes into a destination of size 256 2024-05-22T08:45:55,043 1604 | sprintf(one_stat_name, "%s/%s", co_dir, co_dstat); 2024-05-22T08:45:55,043 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-05-22T08:45:55,525 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ikssdheaders -I/usr/include/python3.11 -c command_dist_wrapper.c -o build/temp.linux-armv7l-cpython-311/command_dist_wrapper.o -fopenmp 2024-05-22T08:45:55,698 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ikssdheaders -I/usr/include/python3.11 -c command_set.c -o build/temp.linux-armv7l-cpython-311/command_set.o -fopenmp 2024-05-22T08:45:55,866 command_set.c: In function ‘sketch_operate’: 2024-05-22T08:45:55,867 command_set.c:179:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2024-05-22T08:45:55,868 179 | for(int n = 0; n < fco_pos[i+1] - fco_pos[i]; n++){ 2024-05-22T08:45:55,869 | ^ 2024-05-22T08:45:55,881 command_set.c: In function ‘combin_subset_pans’: 2024-05-22T08:45:55,882 command_set.c:458:10: warning: passing argument 1 of ‘free’ discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers] 2024-05-22T08:45:55,883 458 | free(co_dstat_fpath); 2024-05-22T08:45:55,883 | ^~~~~~~~~~~~~~ 2024-05-22T08:45:55,884 In file included from kssdheaders/global_basic.h:159, 2024-05-22T08:45:55,885 from command_set.c:15: 2024-05-22T08:45:55,885 /usr/include/stdlib.h:568:25: note: expected ‘void *’ but argument is of type ‘const char *’ 2024-05-22T08:45:55,886 568 | extern void free (void *__ptr) __THROW; 2024-05-22T08:45:55,886 | ~~~~~~^~~~~ 2024-05-22T08:45:55,892 command_set.c: In function ‘grouping_genomes’: 2024-05-22T08:45:55,893 command_set.c:563:10: warning: passing argument 1 of ‘free’ discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers] 2024-05-22T08:45:55,893 563 | free(co_dstat_fpath); 2024-05-22T08:45:55,894 | ^~~~~~~~~~~~~~ 2024-05-22T08:45:55,894 /usr/include/stdlib.h:568:25: note: expected ‘void *’ but argument is of type ‘const char *’ 2024-05-22T08:45:55,895 568 | extern void free (void *__ptr) __THROW; 2024-05-22T08:45:55,895 | ~~~~~~^~~~~ 2024-05-22T08:45:56,093 command_set.c: In function ‘sketch_union’: 2024-05-22T08:45:56,093 command_set.c:72:27: warning: ‘sprintf’ may write a terminating nul past the end of the destination [-Wformat-overflow=] 2024-05-22T08:45:56,094 72 | sprintf(outpath,"%s/%s",set_opt.outdir,co_dstat); 2024-05-22T08:45:56,094 | ^ 2024-05-22T08:45:56,095 command_set.c:72:5: note: ‘sprintf’ output 2 or more bytes (assuming 257) into a destination of size 256 2024-05-22T08:45:56,095 72 | sprintf(outpath,"%s/%s",set_opt.outdir,co_dstat); 2024-05-22T08:45:56,096 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-05-22T08:45:56,097 command_set.c:83:29: warning: ‘%s’ directive writing 6 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2024-05-22T08:45:56,097 83 | sprintf(outpath,"%s/%s.%d",set_opt.insketchpath,skch_prefix,i); 2024-05-22T08:45:56,098 | ^~ ~~~~~~~~~~~ 2024-05-22T08:45:56,098 command_set.c:83:25: note: directive argument in the range [-2147483644, 2147483646] 2024-05-22T08:45:56,099 83 | sprintf(outpath,"%s/%s.%d",set_opt.insketchpath,skch_prefix,i); 2024-05-22T08:45:56,099 | ^~~~~~~~~~ 2024-05-22T08:45:56,100 command_set.c:83:9: note: ‘sprintf’ output between 10 and 275 bytes into a destination of size 256 2024-05-22T08:45:56,100 83 | sprintf(outpath,"%s/%s.%d",set_opt.insketchpath,skch_prefix,i); 2024-05-22T08:45:56,101 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-05-22T08:45:56,102 command_set.c:93:29: warning: ‘%s’ directive writing 3 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2024-05-22T08:45:56,103 93 | sprintf(outpath,"%s/%s.%d",set_opt.outdir,pan_prefix,i); 2024-05-22T08:45:56,103 | ^~ ~~~~~~~~~~ 2024-05-22T08:45:56,104 command_set.c:93:25: note: directive argument in the range [-2147483644, 2147483646] 2024-05-22T08:45:56,105 93 | sprintf(outpath,"%s/%s.%d",set_opt.outdir,pan_prefix,i); 2024-05-22T08:45:56,106 | ^~~~~~~~~~ 2024-05-22T08:45:56,106 command_set.c:93:9: note: ‘sprintf’ output between 7 and 272 bytes into a destination of size 256 2024-05-22T08:45:56,107 93 | sprintf(outpath,"%s/%s.%d",set_opt.outdir,pan_prefix,i); 2024-05-22T08:45:56,108 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-05-22T08:45:56,224 command_set.c: In function ‘sketch_operate’: 2024-05-22T08:45:56,225 command_set.c:154:29: warning: ‘%s’ directive writing 3 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2024-05-22T08:45:56,225 154 | sprintf(tmppath,"%s/%s.%d",set_opt.pansketchpath, pan_prefix, c); 2024-05-22T08:45:56,226 | ^~ ~~~~~~~~~~ 2024-05-22T08:45:56,227 command_set.c:154:25: note: directive argument in the range [-2147483644, 2147483646] 2024-05-22T08:45:56,227 154 | sprintf(tmppath,"%s/%s.%d",set_opt.pansketchpath, pan_prefix, c); 2024-05-22T08:45:56,228 | ^~~~~~~~~~ 2024-05-22T08:45:56,229 command_set.c:154:9: note: ‘sprintf’ output between 7 and 272 bytes into a destination of size 256 2024-05-22T08:45:56,229 154 | sprintf(tmppath,"%s/%s.%d",set_opt.pansketchpath, pan_prefix, c); 2024-05-22T08:45:56,229 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-05-22T08:45:56,230 command_set.c:156:33: warning: ‘%s’ directive writing 8 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2024-05-22T08:45:56,231 156 | sprintf(tmppath,"%s/%s.%d",set_opt.pansketchpath, uniq_pan_prefix, c); 2024-05-22T08:45:56,231 | ^~ ~~~~~~~~~~~~~~~ 2024-05-22T08:45:56,232 command_set.c:156:29: note: directive argument in the range [-2147483644, 2147483646] 2024-05-22T08:45:56,232 156 | sprintf(tmppath,"%s/%s.%d",set_opt.pansketchpath, uniq_pan_prefix, c); 2024-05-22T08:45:56,233 | ^~~~~~~~~~ 2024-05-22T08:45:56,233 command_set.c:156:13: note: ‘sprintf’ output between 12 and 277 bytes into a destination of size 256 2024-05-22T08:45:56,234 156 | sprintf(tmppath,"%s/%s.%d",set_opt.pansketchpath, uniq_pan_prefix, c); 2024-05-22T08:45:56,234 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-05-22T08:45:56,235 command_set.c:166:29: warning: ‘%s’ directive writing 6 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2024-05-22T08:45:56,235 166 | sprintf(tmppath,"%s/%s.index.%d",set_opt.insketchpath,skch_prefix, c); 2024-05-22T08:45:56,236 | ^~ ~~~~~~~~~~~ 2024-05-22T08:45:56,237 command_set.c:166:25: note: directive argument in the range [-2147483644, 2147483646] 2024-05-22T08:45:56,237 166 | sprintf(tmppath,"%s/%s.index.%d",set_opt.insketchpath,skch_prefix, c); 2024-05-22T08:45:56,238 | ^~~~~~~~~~~~~~~~ 2024-05-22T08:45:56,238 command_set.c:166:9: note: ‘sprintf’ output between 16 and 281 bytes into a destination of size 256 2024-05-22T08:45:56,239 166 | sprintf(tmppath,"%s/%s.index.%d",set_opt.insketchpath,skch_prefix, c); 2024-05-22T08:45:56,239 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-05-22T08:45:56,240 command_set.c:170:29: warning: ‘%s’ directive writing 6 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2024-05-22T08:45:56,241 170 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,skch_prefix, c); 2024-05-22T08:45:56,241 | ^~ ~~~~~~~~~~~ 2024-05-22T08:45:56,242 command_set.c:170:25: note: directive argument in the range [-2147483644, 2147483646] 2024-05-22T08:45:56,242 170 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,skch_prefix, c); 2024-05-22T08:45:56,243 | ^~~~~~~~~~ 2024-05-22T08:45:56,243 command_set.c:170:9: note: ‘sprintf’ output between 10 and 275 bytes into a destination of size 256 2024-05-22T08:45:56,244 170 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,skch_prefix, c); 2024-05-22T08:45:56,245 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-05-22T08:45:56,245 command_set.c:175:29: warning: ‘%s’ directive writing 6 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2024-05-22T08:45:56,246 175 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,skch_prefix, c); 2024-05-22T08:45:56,246 | ^~ ~~~~~~~~~~~ 2024-05-22T08:45:56,247 command_set.c:175:25: note: directive argument in the range [-2147483644, 2147483646] 2024-05-22T08:45:56,247 175 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,skch_prefix, c); 2024-05-22T08:45:56,248 | ^~~~~~~~~~ 2024-05-22T08:45:56,249 command_set.c:175:9: note: ‘sprintf’ output between 10 and 275 bytes into a destination of size 256 2024-05-22T08:45:56,249 175 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,skch_prefix, c); 2024-05-22T08:45:56,250 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-05-22T08:45:56,250 command_set.c:188:29: warning: ‘%s’ directive writing 6 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2024-05-22T08:45:56,251 188 | sprintf(tmppath,"%s/%s.index.%d",set_opt.outdir,skch_prefix, c); 2024-05-22T08:45:56,251 | ^~ ~~~~~~~~~~~ 2024-05-22T08:45:56,252 command_set.c:188:25: note: directive argument in the range [-2147483644, 2147483646] 2024-05-22T08:45:56,253 188 | sprintf(tmppath,"%s/%s.index.%d",set_opt.outdir,skch_prefix, c); 2024-05-22T08:45:56,253 | ^~~~~~~~~~~~~~~~ 2024-05-22T08:45:56,254 command_set.c:188:9: note: ‘sprintf’ output between 16 and 281 bytes into a destination of size 256 2024-05-22T08:45:56,254 188 | sprintf(tmppath,"%s/%s.index.%d",set_opt.outdir,skch_prefix, c); 2024-05-22T08:45:56,255 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-05-22T08:45:56,255 command_set.c:193:27: warning: ‘sprintf’ may write a terminating nul past the end of the destination [-Wformat-overflow=] 2024-05-22T08:45:56,257 193 | sprintf(tmppath,"%s/%s",set_opt.outdir,co_dstat); 2024-05-22T08:45:56,257 | ^ 2024-05-22T08:45:56,258 command_set.c:193:5: note: ‘sprintf’ output 2 or more bytes (assuming 257) into a destination of size 256 2024-05-22T08:45:56,258 193 | sprintf(tmppath,"%s/%s",set_opt.outdir,co_dstat); 2024-05-22T08:45:56,259 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-05-22T08:45:56,399 command_set.c: In function ‘uniq_sketch_union’: 2024-05-22T08:45:56,400 command_set.c:220:39: warning: ‘sprintf’ may write a terminating nul past the end of the destination [-Wformat-overflow=] 2024-05-22T08:45:56,400 220 | sprintf(unionco,"%s.%d",uniq_pan_prefix,i); 2024-05-22T08:45:56,401 | ^ 2024-05-22T08:45:56,402 command_set.c:220:17: note: ‘sprintf’ output between 11 and 21 bytes into a destination of size 20 2024-05-22T08:45:56,402 220 | sprintf(unionco,"%s.%d",uniq_pan_prefix,i); 2024-05-22T08:45:56,403 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-05-22T08:45:56,404 command_set.c:235:27: warning: ‘sprintf’ may write a terminating nul past the end of the destination [-Wformat-overflow=] 2024-05-22T08:45:56,405 235 | sprintf(outpath,"%s/%s",set_opt.outdir,co_dstat); 2024-05-22T08:45:56,405 | ^ 2024-05-22T08:45:56,406 command_set.c:235:5: note: ‘sprintf’ output 2 or more bytes (assuming 257) into a destination of size 256 2024-05-22T08:45:56,407 235 | sprintf(outpath,"%s/%s",set_opt.outdir,co_dstat); 2024-05-22T08:45:56,407 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-05-22T08:45:56,408 command_set.c:248:29: warning: ‘%s’ directive writing 6 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2024-05-22T08:45:56,409 248 | sprintf(outpath,"%s/%s.%d",set_opt.insketchpath,skch_prefix,i); 2024-05-22T08:45:56,409 | ^~ ~~~~~~~~~~~ 2024-05-22T08:45:56,410 command_set.c:248:25: note: directive argument in the range [-2147483644, 2147483646] 2024-05-22T08:45:56,411 248 | sprintf(outpath,"%s/%s.%d",set_opt.insketchpath,skch_prefix,i); 2024-05-22T08:45:56,411 | ^~~~~~~~~~ 2024-05-22T08:45:56,412 command_set.c:248:9: note: ‘sprintf’ output between 10 and 275 bytes into a destination of size 256 2024-05-22T08:45:56,413 248 | sprintf(outpath,"%s/%s.%d",set_opt.insketchpath,skch_prefix,i); 2024-05-22T08:45:56,414 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-05-22T08:45:56,415 command_set.c:260:29: warning: ‘%s’ directive writing 8 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2024-05-22T08:45:56,415 260 | sprintf(outpath,"%s/%s.%d",set_opt.outdir,uniq_pan_prefix,i); 2024-05-22T08:45:56,416 | ^~ ~~~~~~~~~~~~~~~ 2024-05-22T08:45:56,416 command_set.c:260:25: note: directive argument in the range [-2147483644, 2147483646] 2024-05-22T08:45:56,417 260 | sprintf(outpath,"%s/%s.%d",set_opt.outdir,uniq_pan_prefix,i); 2024-05-22T08:45:56,417 | ^~~~~~~~~~ 2024-05-22T08:45:56,418 command_set.c:260:9: note: ‘sprintf’ output between 12 and 277 bytes into a destination of size 256 2024-05-22T08:45:56,418 260 | sprintf(outpath,"%s/%s.%d",set_opt.outdir,uniq_pan_prefix,i); 2024-05-22T08:45:56,419 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-05-22T08:45:56,544 command_set.c: In function ‘combin_pans’: 2024-05-22T08:45:56,545 command_set.c:298:29: warning: ‘%s’ directive writing 6 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2024-05-22T08:45:56,546 298 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,skch_prefix,c); 2024-05-22T08:45:56,546 | ^~ ~~~~~~~~~~~ 2024-05-22T08:45:56,547 command_set.c:298:25: note: directive argument in the range [0, 1073741823] 2024-05-22T08:45:56,547 298 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,skch_prefix,c); 2024-05-22T08:45:56,548 | ^~~~~~~~~~ 2024-05-22T08:45:56,548 command_set.c:298:9: note: ‘sprintf’ output between 10 and 274 bytes into a destination of size 256 2024-05-22T08:45:56,549 298 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,skch_prefix,c); 2024-05-22T08:45:56,550 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-05-22T08:45:56,550 command_set.c:301:29: warning: ‘%s’ directive writing 12 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2024-05-22T08:45:56,551 301 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,idx_prefix,c); 2024-05-22T08:45:56,552 | ^~ ~~~~~~~~~~ 2024-05-22T08:45:56,552 command_set.c:301:25: note: directive argument in the range [0, 1073741823] 2024-05-22T08:45:56,553 301 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,idx_prefix,c); 2024-05-22T08:45:56,553 | ^~~~~~~~~~ 2024-05-22T08:45:56,554 command_set.c:301:9: note: ‘sprintf’ output between 16 and 280 bytes into a destination of size 256 2024-05-22T08:45:56,555 301 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,idx_prefix,c); 2024-05-22T08:45:56,555 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-05-22T08:45:56,556 command_set.c:343:27: warning: ‘sprintf’ may write a terminating nul past the end of the destination [-Wformat-overflow=] 2024-05-22T08:45:56,557 343 | sprintf(tmppath,"%s/%s",set_opt.outdir,co_dstat); 2024-05-22T08:45:56,557 | ^ 2024-05-22T08:45:56,558 command_set.c:343:5: note: ‘sprintf’ output 2 or more bytes (assuming 257) into a destination of size 256 2024-05-22T08:45:56,559 343 | sprintf(tmppath,"%s/%s",set_opt.outdir,co_dstat); 2024-05-22T08:45:56,559 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-05-22T08:45:56,762 command_set.c: In function ‘combin_subset_pans’: 2024-05-22T08:45:56,762 command_set.c:470:29: warning: ‘%s’ directive writing 6 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2024-05-22T08:45:56,763 470 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,skch_prefix,c); 2024-05-22T08:45:56,764 | ^~ ~~~~~~~~~~~ 2024-05-22T08:45:56,765 command_set.c:470:25: note: directive argument in the range [-2147483644, 2147483646] 2024-05-22T08:45:56,765 470 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,skch_prefix,c); 2024-05-22T08:45:56,766 | ^~~~~~~~~~ 2024-05-22T08:45:56,766 command_set.c:470:9: note: ‘sprintf’ output between 10 and 275 bytes into a destination of size 256 2024-05-22T08:45:56,766 470 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,skch_prefix,c); 2024-05-22T08:45:56,767 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-05-22T08:45:56,767 command_set.c:476:29: warning: ‘%s’ directive writing 12 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2024-05-22T08:45:56,768 476 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,idx_prefix,c); 2024-05-22T08:45:56,774 | ^~ ~~~~~~~~~~ 2024-05-22T08:45:56,775 command_set.c:476:25: note: directive argument in the range [-2147483644, 2147483646] 2024-05-22T08:45:56,775 476 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,idx_prefix,c); 2024-05-22T08:45:56,776 | ^~~~~~~~~~ 2024-05-22T08:45:56,776 command_set.c:476:9: note: ‘sprintf’ output between 16 and 281 bytes into a destination of size 256 2024-05-22T08:45:56,777 476 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,idx_prefix,c); 2024-05-22T08:45:56,777 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-05-22T08:45:56,778 command_set.c:482:29: warning: ‘%s’ directive writing 6 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2024-05-22T08:45:56,778 482 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,skch_prefix,c); 2024-05-22T08:45:56,779 | ^~ ~~~~~~~~~~~ 2024-05-22T08:45:56,779 command_set.c:482:25: note: directive argument in the range [-2147483644, 2147483646] 2024-05-22T08:45:56,780 482 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,skch_prefix,c); 2024-05-22T08:45:56,780 | ^~~~~~~~~~ 2024-05-22T08:45:56,781 command_set.c:482:9: note: ‘sprintf’ output between 10 and 275 bytes into a destination of size 256 2024-05-22T08:45:56,781 482 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,skch_prefix,c); 2024-05-22T08:45:56,782 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-05-22T08:45:56,783 command_set.c:513:29: warning: ‘%s’ directive writing 12 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2024-05-22T08:45:56,783 513 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,idx_prefix,c); 2024-05-22T08:45:56,784 | ^~ ~~~~~~~~~~ 2024-05-22T08:45:56,784 command_set.c:513:25: note: directive argument in the range [-2147483644, 2147483646] 2024-05-22T08:45:56,785 513 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,idx_prefix,c); 2024-05-22T08:45:56,786 | ^~~~~~~~~~ 2024-05-22T08:45:56,786 command_set.c:513:9: note: ‘sprintf’ output between 16 and 281 bytes into a destination of size 256 2024-05-22T08:45:56,787 513 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,idx_prefix,c); 2024-05-22T08:45:56,787 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-05-22T08:45:56,788 command_set.c:524:27: warning: ‘sprintf’ may write a terminating nul past the end of the destination [-Wformat-overflow=] 2024-05-22T08:45:56,789 524 | sprintf(tmppath,"%s/%s",set_opt.outdir,co_dstat); 2024-05-22T08:45:56,789 | ^ 2024-05-22T08:45:56,790 command_set.c:524:5: note: ‘sprintf’ output 2 or more bytes (assuming 257) into a destination of size 256 2024-05-22T08:45:56,791 524 | sprintf(tmppath,"%s/%s",set_opt.outdir,co_dstat); 2024-05-22T08:45:56,792 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-05-22T08:45:57,007 command_set.c: In function ‘grouping_genomes’: 2024-05-22T08:45:57,008 command_set.c:575:29: warning: ‘%s’ directive writing 6 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2024-05-22T08:45:57,008 575 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,skch_prefix,c); 2024-05-22T08:45:57,008 | ^~ ~~~~~~~~~~~ 2024-05-22T08:45:57,009 command_set.c:575:25: note: directive argument in the range [-2147483644, 2147483646] 2024-05-22T08:45:57,009 575 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,skch_prefix,c); 2024-05-22T08:45:57,010 | ^~~~~~~~~~ 2024-05-22T08:45:57,010 command_set.c:575:9: note: ‘sprintf’ output between 10 and 275 bytes into a destination of size 256 2024-05-22T08:45:57,011 575 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,skch_prefix,c); 2024-05-22T08:45:57,011 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-05-22T08:45:57,011 command_set.c:581:29: warning: ‘%s’ directive writing 12 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2024-05-22T08:45:57,012 581 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,idx_prefix,c); 2024-05-22T08:45:57,012 | ^~ ~~~~~~~~~~ 2024-05-22T08:45:57,013 command_set.c:581:25: note: directive argument in the range [-2147483644, 2147483646] 2024-05-22T08:45:57,013 581 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,idx_prefix,c); 2024-05-22T08:45:57,014 | ^~~~~~~~~~ 2024-05-22T08:45:57,014 command_set.c:581:9: note: ‘sprintf’ output between 16 and 281 bytes into a destination of size 256 2024-05-22T08:45:57,015 581 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,idx_prefix,c); 2024-05-22T08:45:57,015 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-05-22T08:45:57,016 command_set.c:613:29: warning: ‘%s’ directive writing 6 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2024-05-22T08:45:57,017 613 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,skch_prefix,c); 2024-05-22T08:45:57,017 | ^~ ~~~~~~~~~~~ 2024-05-22T08:45:57,018 command_set.c:613:25: note: directive argument in the range [-2147483644, 2147483646] 2024-05-22T08:45:57,019 613 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,skch_prefix,c); 2024-05-22T08:45:57,019 | ^~~~~~~~~~ 2024-05-22T08:45:57,020 command_set.c:613:9: note: ‘sprintf’ output between 10 and 275 bytes into a destination of size 256 2024-05-22T08:45:57,021 613 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,skch_prefix,c); 2024-05-22T08:45:57,021 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-05-22T08:45:57,022 command_set.c:635:29: warning: ‘%s’ directive writing 12 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2024-05-22T08:45:57,023 635 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,idx_prefix,c); 2024-05-22T08:45:57,023 | ^~ ~~~~~~~~~~ 2024-05-22T08:45:57,024 command_set.c:635:25: note: directive argument in the range [-2147483644, 2147483646] 2024-05-22T08:45:57,025 635 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,idx_prefix,c); 2024-05-22T08:45:57,025 | ^~~~~~~~~~ 2024-05-22T08:45:57,026 command_set.c:635:9: note: ‘sprintf’ output between 16 and 281 bytes into a destination of size 256 2024-05-22T08:45:57,027 635 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,idx_prefix,c); 2024-05-22T08:45:57,027 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-05-22T08:45:57,028 command_set.c:646:27: warning: ‘sprintf’ may write a terminating nul past the end of the destination [-Wformat-overflow=] 2024-05-22T08:45:57,029 646 | sprintf(tmppath,"%s/%s",set_opt.outdir,co_dstat); 2024-05-22T08:45:57,029 | ^ 2024-05-22T08:45:57,030 command_set.c:646:5: note: ‘sprintf’ output 2 or more bytes (assuming 257) into a destination of size 256 2024-05-22T08:45:57,030 646 | sprintf(tmppath,"%s/%s",set_opt.outdir,co_dstat); 2024-05-22T08:45:57,031 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-05-22T08:45:57,304 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ikssdheaders -I/usr/include/python3.11 -c command_shuffle.c -o build/temp.linux-armv7l-cpython-311/command_shuffle.o -fopenmp 2024-05-22T08:45:57,622 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ikssdheaders -I/usr/include/python3.11 -c global_basic.c -o build/temp.linux-armv7l-cpython-311/global_basic.o -fopenmp 2024-05-22T08:45:57,789 global_basic.c: In function ‘organize_infile_list’: 2024-05-22T08:45:57,790 global_basic.c:195:20: warning: implicit declaration of function ‘isspace’ [-Wimplicit-function-declaration] 2024-05-22T08:45:57,790 195 | while (isspace(*buf)) buf++; 2024-05-22T08:45:57,791 | ^~~~~~~ 2024-05-22T08:45:57,791 global_basic.c:35:1: note: include ‘’ or provide a declaration of ‘isspace’ 2024-05-22T08:45:57,792 34 | #include 2024-05-22T08:45:57,793 +++ |+#include 2024-05-22T08:45:57,793 35 | 2024-05-22T08:45:57,794 global_basic.c:201:69: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 6 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 2024-05-22T08:45:57,795 201 | "the input list: %s\n %dth line: %s has %lu characters exceed the maximal allowed length %d", 2024-05-22T08:45:57,795 | ~~^ 2024-05-22T08:45:57,796 | | 2024-05-22T08:45:57,796 | long unsigned int 2024-05-22T08:45:57,797 | %u 2024-05-22T08:45:57,798 202 | list_path, file_num, buf, strlen(buf), PATHLEN); 2024-05-22T08:45:57,798 | ~~~~~~~~~~~ 2024-05-22T08:45:57,799 | | 2024-05-22T08:45:57,800 | size_t {aka unsigned int} 2024-05-22T08:45:57,801 global_basic.c:233:69: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 6 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 2024-05-22T08:45:57,801 233 | "the input list: %s\n %dth line: %s has %lu characters exceed the maximal allowed length %d", 2024-05-22T08:45:57,802 | ~~^ 2024-05-22T08:45:57,802 | | 2024-05-22T08:45:57,803 | long unsigned int 2024-05-22T08:45:57,804 | %u 2024-05-22T08:45:57,804 234 | list_path, file_num, buf, strlen(buf), PATHLEN); 2024-05-22T08:45:57,805 | ~~~~~~~~~~~ 2024-05-22T08:45:57,806 | | 2024-05-22T08:45:57,806 | size_t {aka unsigned int} 2024-05-22T08:45:58,561 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ikssdheaders -I/usr/include/python3.11 -c iseq2comem.c -o build/temp.linux-armv7l-cpython-311/iseq2comem.o -fopenmp 2024-05-22T08:45:58,746 iseq2comem.c: In function ‘reads2mco’: 2024-05-22T08:45:58,747 iseq2comem.c:156:18: warning: comparison of integer expressions of different signedness: ‘llong’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare] 2024-05-22T08:45:58,747 156 | if (base > TL) { 2024-05-22T08:45:58,748 | ^ 2024-05-22T08:45:58,749 iseq2comem.c:160:26: warning: comparison of integer expressions of different signedness: ‘llong’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare] 2024-05-22T08:45:58,749 160 | if ((pfilter >= dim_end) || (pfilter < dim_start)) continue; 2024-05-22T08:45:58,750 | ^~ 2024-05-22T08:45:58,750 iseq2comem.c:160:50: warning: comparison of integer expressions of different signedness: ‘llong’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare] 2024-05-22T08:45:58,751 160 | if ((pfilter >= dim_end) || (pfilter < dim_start)) continue; 2024-05-22T08:45:58,752 | ^ 2024-05-22T08:45:58,752 iseq2comem.c: In function ‘fasta2co’: 2024-05-22T08:45:58,753 iseq2comem.c:239:18: warning: comparison of integer expressions of different signedness: ‘llong’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare] 2024-05-22T08:45:58,753 239 | if (base > TL) { 2024-05-22T08:45:58,754 | ^ 2024-05-22T08:45:58,755 iseq2comem.c:243:26: warning: comparison of integer expressions of different signedness: ‘llong’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare] 2024-05-22T08:45:58,755 243 | if ((pfilter >= dim_end) || (pfilter < dim_start)) continue; 2024-05-22T08:45:58,756 | ^~ 2024-05-22T08:45:58,757 iseq2comem.c:243:50: warning: comparison of integer expressions of different signedness: ‘llong’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare] 2024-05-22T08:45:58,758 243 | if ((pfilter >= dim_end) || (pfilter < dim_start)) continue; 2024-05-22T08:45:58,758 | ^ 2024-05-22T08:45:58,759 iseq2comem.c: In function ‘fastq2co’: 2024-05-22T08:45:58,760 iseq2comem.c:272:11: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long long unsigned int’ [-Wsign-compare] 2024-05-22T08:45:58,761 272 | if (M >= CT_MAX) fprintf(stderr, "fastq2co(): Occurence num should smaller than %d", (int) CT_MAX); 2024-05-22T08:45:58,761 | ^~ 2024-05-22T08:45:58,762 iseq2comem.c:318:18: warning: comparison of integer expressions of different signedness: ‘llong’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare] 2024-05-22T08:45:58,763 318 | if (base > TL) { 2024-05-22T08:45:58,763 | ^ 2024-05-22T08:45:58,764 iseq2comem.c:322:26: warning: comparison of integer expressions of different signedness: ‘llong’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare] 2024-05-22T08:45:58,765 322 | if ((pfilter >= dim_end) || (pfilter < dim_start)) continue; 2024-05-22T08:45:58,765 | ^~ 2024-05-22T08:45:58,766 iseq2comem.c:322:50: warning: comparison of integer expressions of different signedness: ‘llong’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare] 2024-05-22T08:45:58,767 322 | if ((pfilter >= dim_end) || (pfilter < dim_start)) continue; 2024-05-22T08:45:58,767 | ^ 2024-05-22T08:45:58,768 iseq2comem.c:341:44: warning: comparison of integer expressions of different signedness: ‘long long unsigned int’ and ‘int’ [-Wsign-compare] 2024-05-22T08:45:58,769 341 | if (!((co[n] & CT_MAX) < M)) co[n] |= CT_MAX; 2024-05-22T08:45:58,770 | ^ 2024-05-22T08:45:58,770 iseq2comem.c: In function ‘fastq2koc’: 2024-05-22T08:45:58,771 iseq2comem.c:402:18: warning: comparison of integer expressions of different signedness: ‘llong’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare] 2024-05-22T08:45:58,771 402 | if (base > TL) { 2024-05-22T08:45:58,772 | ^ 2024-05-22T08:45:58,773 iseq2comem.c:406:26: warning: comparison of integer expressions of different signedness: ‘llong’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare] 2024-05-22T08:45:58,773 406 | if ((pfilter >= dim_end) || (pfilter < dim_start)) continue; 2024-05-22T08:45:58,774 | ^~ 2024-05-22T08:45:58,774 iseq2comem.c:406:50: warning: comparison of integer expressions of different signedness: ‘llong’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare] 2024-05-22T08:45:58,775 406 | if ((pfilter >= dim_end) || (pfilter < dim_start)) continue; 2024-05-22T08:45:58,776 | ^ 2024-05-22T08:45:58,777 iseq2comem.c: In function ‘mt_shortreads2koc’: 2024-05-22T08:45:58,778 iseq2comem.c:582:34: warning: comparison of integer expressions of different signedness: ‘llong’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare] 2024-05-22T08:45:58,778 582 | if ((pfilter >= dim_end) || (pfilter < dim_start)) continue; 2024-05-22T08:45:58,779 | ^~ 2024-05-22T08:45:58,779 iseq2comem.c:582:58: warning: comparison of integer expressions of different signedness: ‘llong’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare] 2024-05-22T08:45:58,780 582 | if ((pfilter >= dim_end) || (pfilter < dim_start)) continue; 2024-05-22T08:45:58,781 | ^ 2024-05-22T08:46:00,117 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ikssdheaders -I/usr/include/python3.11 -c mman.c -o build/temp.linux-armv7l-cpython-311/mman.o -fopenmp 2024-05-22T08:46:00,171 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ikssdheaders -I/usr/include/python3.11 -c mytime.c -o build/temp.linux-armv7l-cpython-311/mytime.o -fopenmp 2024-05-22T08:46:00,295 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ikssdheaders -I/usr/include/python3.11 -c pykssd.c -o build/temp.linux-armv7l-cpython-311/pykssd.o -fopenmp 2024-05-22T08:46:00,683 pykssd.c: In function ‘py_dist_dispatch’: 2024-05-22T08:46:00,683 pykssd.c:304:13: warning: unused variable ‘state1’ [-Wunused-variable] 2024-05-22T08:46:00,684 304 | int state1 = dist_dispatch(&dist_opt_val1); 2024-05-22T08:46:00,685 | ^~~~~~ 2024-05-22T08:46:00,685 pykssd.c:361:13: warning: unused variable ‘state2’ [-Wunused-variable] 2024-05-22T08:46:00,686 361 | int state2 = dist_dispatch(&dist_opt_val2); 2024-05-22T08:46:00,687 | ^~~~~~ 2024-05-22T08:46:00,687 pykssd.c:480:13: warning: unused variable ‘state4’ [-Wunused-variable] 2024-05-22T08:46:00,688 480 | int state4 = dist_dispatch(&dist_opt_val4); 2024-05-22T08:46:00,689 | ^~~~~~ 2024-05-22T08:46:01,260 arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/co2mco.o build/temp.linux-armv7l-cpython-311/command_composite.o build/temp.linux-armv7l-cpython-311/command_dist.o build/temp.linux-armv7l-cpython-311/command_dist_wrapper.o build/temp.linux-armv7l-cpython-311/command_set.o build/temp.linux-armv7l-cpython-311/command_shuffle.o build/temp.linux-armv7l-cpython-311/global_basic.o build/temp.linux-armv7l-cpython-311/iseq2comem.o build/temp.linux-armv7l-cpython-311/mman.o build/temp.linux-armv7l-cpython-311/mytime.o build/temp.linux-armv7l-cpython-311/pykssd.o -L/usr/lib/arm-linux-gnueabihf -lz -o build/lib.linux-armv7l-cpython-311/kssd.cpython-311-arm-linux-gnueabihf.so -fopenmp 2024-05-22T08:46:01,407 building 'nj' extension 2024-05-22T08:46:01,408 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Injheaders -I/usr/include/python3.11 -c align.c -o build/temp.linux-armv7l-cpython-311/align.o 2024-05-22T08:46:01,907 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Injheaders -I/usr/include/python3.11 -c buildtree.c -o build/temp.linux-armv7l-cpython-311/buildtree.o 2024-05-22T08:46:02,063 buildtree.c: In function ‘UPGMA_buildtree’: 2024-05-22T08:46:02,064 buildtree.c:716:33: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2024-05-22T08:46:02,064 716 | if (min_of_row_idx[m] == minj || min_of_row_idx[m] == mini) { 2024-05-22T08:46:02,065 | ^~ 2024-05-22T08:46:02,065 buildtree.c:716:62: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2024-05-22T08:46:02,066 716 | if (min_of_row_idx[m] == minj || min_of_row_idx[m] == mini) { 2024-05-22T08:46:02,067 | ^~ 2024-05-22T08:46:02,722 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Injheaders -I/usr/include/python3.11 -c cluster.c -o build/temp.linux-armv7l-cpython-311/cluster.o 2024-05-22T08:46:03,096 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Injheaders -I/usr/include/python3.11 -c distancemat.c -o build/temp.linux-armv7l-cpython-311/distancemat.o 2024-05-22T08:46:03,232 distancemat.c: In function ‘clone_DistanceMatrix’: 2024-05-22T08:46:03,233 distancemat.c:226:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2024-05-22T08:46:03,234 226 | for( i=0; i < dest->size; i++) { 2024-05-22T08:46:03,234 | ^ 2024-05-22T08:46:03,235 distancemat.c: In function ‘empty_DistanceMatrix’: 2024-05-22T08:46:03,235 distancemat.c:260:15: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2024-05-22T08:46:03,236 260 | for( i=0; i < mat->size; i++) { 2024-05-22T08:46:03,237 | ^ 2024-05-22T08:46:03,237 distancemat.c: In function ‘print_DistanceMatrix’: 2024-05-22T08:46:03,238 distancemat.c:349:18: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2024-05-22T08:46:03,239 349 | for(row=0; row < mat->size; row++) { 2024-05-22T08:46:03,240 | ^ 2024-05-22T08:46:03,241 distancemat.c: In function ‘read_phylip_DistanceMatrix’: 2024-05-22T08:46:03,241 distancemat.c:410:11: warning: suggest parentheses around assignment used as truth value [-Wparentheses] 2024-05-22T08:46:03,242 410 | while(c = fgetc(handle)) { 2024-05-22T08:46:03,242 | ^ 2024-05-22T08:46:03,626 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Injheaders -I/usr/include/python3.11 -c pynj.c -o build/temp.linux-armv7l-cpython-311/pynj.o 2024-05-22T08:46:04,071 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Injheaders -I/usr/include/python3.11 -c sequence.c -o build/temp.linux-armv7l-cpython-311/sequence.o 2024-05-22T08:46:04,287 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Injheaders -I/usr/include/python3.11 -c tree.c -o build/temp.linux-armv7l-cpython-311/tree.o 2024-05-22T08:46:05,137 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Injheaders -I/usr/include/python3.11 -c util.c -o build/temp.linux-armv7l-cpython-311/util.o 2024-05-22T08:46:05,313 arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/align.o build/temp.linux-armv7l-cpython-311/buildtree.o build/temp.linux-armv7l-cpython-311/cluster.o build/temp.linux-armv7l-cpython-311/distancemat.o build/temp.linux-armv7l-cpython-311/pynj.o build/temp.linux-armv7l-cpython-311/sequence.o build/temp.linux-armv7l-cpython-311/tree.o build/temp.linux-armv7l-cpython-311/util.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/nj.cpython-311-arm-linux-gnueabihf.so 2024-05-22T08:46:05,422 building 'dnj' extension 2024-05-22T08:46:05,423 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Idnjheaders -I/usr/include/python3.11 -c bytescale.c -o build/temp.linux-armv7l-cpython-311/bytescale.o -fopenmp 2024-05-22T08:46:05,478 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Idnjheaders -I/usr/include/python3.11 -c dnj.c -o build/temp.linux-armv7l-cpython-311/dnj.o -fopenmp 2024-05-22T08:46:05,632 dnj.c: In function ‘minQpair’: 2024-05-22T08:46:05,633 dnj.c:70:13: warning: left shift count >= width of type [-Wshift-count-overflow] 2024-05-22T08:46:05,634 70 | pos <<= sizeof(unsigned) * 8; 2024-05-22T08:46:05,634 | ^~~ 2024-05-22T08:46:05,635 dnj.c:126:21: warning: left shift count >= width of type [-Wshift-count-overflow] 2024-05-22T08:46:05,636 126 | pos <<= sizeof(unsigned) * 8; 2024-05-22T08:46:05,637 | ^~~ 2024-05-22T08:46:05,637 dnj.c: In function ‘maxQpair’: 2024-05-22T08:46:05,638 dnj.c:157:13: warning: left shift count >= width of type [-Wshift-count-overflow] 2024-05-22T08:46:05,639 157 | pos <<= sizeof(unsigned) * 8; 2024-05-22T08:46:05,639 | ^~~ 2024-05-22T08:46:05,640 dnj.c:213:21: warning: left shift count >= width of type [-Wshift-count-overflow] 2024-05-22T08:46:05,641 213 | pos <<= sizeof(unsigned) * 8; 2024-05-22T08:46:05,641 | ^~~ 2024-05-22T08:46:05,642 dnj.c: In function ‘UPGMApair’: 2024-05-22T08:46:05,642 dnj.c:237:13: warning: left shift count >= width of type [-Wshift-count-overflow] 2024-05-22T08:46:05,643 237 | pos <<= sizeof(unsigned) * 8; 2024-05-22T08:46:05,644 | ^~~ 2024-05-22T08:46:05,644 dnj.c:284:25: warning: left shift count >= width of type [-Wshift-count-overflow] 2024-05-22T08:46:05,645 284 | pos <<= sizeof(unsigned) * 8; 2024-05-22T08:46:05,646 | ^~~ 2024-05-22T08:46:05,646 dnj.c:291:21: warning: left shift count >= width of type [-Wshift-count-overflow] 2024-05-22T08:46:05,647 291 | pos <<= sizeof(unsigned) * 8; 2024-05-22T08:46:05,648 | ^~~ 2024-05-22T08:46:05,649 dnj.c: In function ‘minQrow’: 2024-05-22T08:46:05,649 dnj.c:374:17: warning: left shift count >= width of type [-Wshift-count-overflow] 2024-05-22T08:46:05,650 374 | pos <<= sizeof(unsigned) * 8; 2024-05-22T08:46:05,650 | ^~~ 2024-05-22T08:46:05,651 dnj.c: In function ‘maxQrow’: 2024-05-22T08:46:05,651 dnj.c:435:17: warning: left shift count >= width of type [-Wshift-count-overflow] 2024-05-22T08:46:05,652 435 | pos <<= sizeof(unsigned) * 8; 2024-05-22T08:46:05,652 | ^~~ 2024-05-22T08:46:05,653 dnj.c: In function ‘UPGMArow’: 2024-05-22T08:46:05,653 dnj.c:488:21: warning: left shift count >= width of type [-Wshift-count-overflow] 2024-05-22T08:46:05,654 488 | pos <<= sizeof(unsigned) * 8; 2024-05-22T08:46:05,654 | ^~~ 2024-05-22T08:46:05,655 dnj.c:494:17: warning: left shift count >= width of type [-Wshift-count-overflow] 2024-05-22T08:46:05,655 494 | pos <<= sizeof(unsigned) * 8; 2024-05-22T08:46:05,656 | ^~~ 2024-05-22T08:46:05,657 dnj.c: In function ‘minQ_thread’: 2024-05-22T08:46:05,657 dnj.c:553:17: warning: left shift count >= width of type [-Wshift-count-overflow] 2024-05-22T08:46:05,658 553 | pos <<= sizeof(unsigned) * 8; 2024-05-22T08:46:05,658 | ^~~ 2024-05-22T08:46:07,016 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Idnjheaders -I/usr/include/python3.11 -c filebuff.c -o build/temp.linux-armv7l-cpython-311/filebuff.o -fopenmp 2024-05-22T08:46:07,144 filebuff.c: In function ‘BuffgzFileBuff’: 2024-05-22T08:46:07,145 filebuff.c:99:54: warning: comparison of integer expressions of different signedness: ‘uInt’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2024-05-22T08:46:07,145 99 | if(status == Z_STREAM_END && strm->avail_out == dest->buffSize) { 2024-05-22T08:46:07,146 | ^~ 2024-05-22T08:46:07,471 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Idnjheaders -I/usr/include/python3.11 -c hclust.c -o build/temp.linux-armv7l-cpython-311/hclust.o -fopenmp 2024-05-22T08:46:07,607 hclust.c: In function ‘minQ’: 2024-05-22T08:46:07,608 hclust.c:364:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2024-05-22T08:46:07,609 364 | while(++i < Q->n) { 2024-05-22T08:46:07,609 | ^ 2024-05-22T08:46:07,610 hclust.c:377:13: warning: left shift count >= width of type [-Wshift-count-overflow] 2024-05-22T08:46:07,611 377 | pos <<= sizeof(unsigned) * 8; 2024-05-22T08:46:07,611 | ^~~ 2024-05-22T08:46:07,612 hclust.c: In function ‘maxQ’: 2024-05-22T08:46:07,613 hclust.c:394:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2024-05-22T08:46:07,613 394 | while(++i < Q->n) { 2024-05-22T08:46:07,614 | ^ 2024-05-22T08:46:07,614 hclust.c:407:13: warning: left shift count >= width of type [-Wshift-count-overflow] 2024-05-22T08:46:07,615 407 | pos <<= sizeof(unsigned) * 8; 2024-05-22T08:46:07,616 | ^~~ 2024-05-22T08:46:10,013 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Idnjheaders -I/usr/include/python3.11 -c matrix.c -o build/temp.linux-armv7l-cpython-311/matrix.o -fopenmp 2024-05-22T08:46:10,141 matrix.c: In function ‘ltdMatrix_popArrange’: 2024-05-22T08:46:10,142 matrix.c:538:16: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2024-05-22T08:46:10,142 538 | if(pos != n) { 2024-05-22T08:46:10,143 | ^~ 2024-05-22T08:46:11,021 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Idnjheaders -I/usr/include/python3.11 -c mman.c -o build/temp.linux-armv7l-cpython-311/mman.o -fopenmp 2024-05-22T08:46:11,076 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Idnjheaders -I/usr/include/python3.11 -c nj.c -o build/temp.linux-armv7l-cpython-311/nj.o -fopenmp 2024-05-22T08:46:11,206 nj.c: In function ‘initQ’: 2024-05-22T08:46:11,207 nj.c:243:13: warning: left shift count >= width of type [-Wshift-count-overflow] 2024-05-22T08:46:11,207 243 | pos <<= sizeof(unsigned) * 8; 2024-05-22T08:46:11,208 | ^~~ 2024-05-22T08:46:11,209 nj.c: In function ‘initQ_MN’: 2024-05-22T08:46:11,210 nj.c:358:13: warning: left shift count >= width of type [-Wshift-count-overflow] 2024-05-22T08:46:11,210 358 | pos <<= sizeof(unsigned) * 8; 2024-05-22T08:46:11,211 | ^~~ 2024-05-22T08:46:11,215 nj.c: In function ‘minD’: 2024-05-22T08:46:11,215 nj.c:559:13: warning: left shift count >= width of type [-Wshift-count-overflow] 2024-05-22T08:46:11,216 559 | pos <<= sizeof(unsigned) * 8; 2024-05-22T08:46:11,216 | ^~~ 2024-05-22T08:46:11,217 nj.c: In function ‘maxD’: 2024-05-22T08:46:11,218 nj.c:642:13: warning: left shift count >= width of type [-Wshift-count-overflow] 2024-05-22T08:46:11,218 642 | pos <<= sizeof(unsigned) * 8; 2024-05-22T08:46:11,219 | ^~~ 2024-05-22T08:46:11,223 nj.c: In function ‘minPair’: 2024-05-22T08:46:11,223 nj.c:826:13: warning: left shift count >= width of type [-Wshift-count-overflow] 2024-05-22T08:46:11,224 826 | pos <<= sizeof(unsigned) * 8; 2024-05-22T08:46:11,225 | ^~~ 2024-05-22T08:46:13,610 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Idnjheaders -I/usr/include/python3.11 -c nwck.c -o build/temp.linux-armv7l-cpython-311/nwck.o -fopenmp 2024-05-22T08:46:14,161 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Idnjheaders -I/usr/include/python3.11 -c pherror.c -o build/temp.linux-armv7l-cpython-311/pherror.o -fopenmp 2024-05-22T08:46:14,255 pherror.c: In function ‘cfread’: 2024-05-22T08:46:14,256 pherror.c:58:56: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2024-05-22T08:46:14,257 58 | } else if(nmemb == 0 || (nmemb == -1 && (errno & EAGAIN))) { 2024-05-22T08:46:14,258 | ^~ 2024-05-22T08:46:14,351 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Idnjheaders -I/usr/include/python3.11 -c phy.c -o build/temp.linux-armv7l-cpython-311/phy.o -fopenmp 2024-05-22T08:46:15,428 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Idnjheaders -I/usr/include/python3.11 -c pydnj.c -o build/temp.linux-armv7l-cpython-311/pydnj.o -fopenmp 2024-05-22T08:46:15,800 In file included from pydnj.c:11: 2024-05-22T08:46:15,800 dnjheaders/pherror.h:20: warning: "_XOPEN_SOURCE" redefined 2024-05-22T08:46:15,801 20 | #define _XOPEN_SOURCE 600 2024-05-22T08:46:15,802 | 2024-05-22T08:46:15,802 In file included from /usr/include/arm-linux-gnueabihf/bits/libc-header-start.h:33, 2024-05-22T08:46:15,803 from /usr/include/stdlib.h:26, 2024-05-22T08:46:15,803 from /usr/include/python3.11/Python.h:23, 2024-05-22T08:46:15,804 from pydnj.c:1: 2024-05-22T08:46:15,804 /usr/include/features.h:214: note: this is the location of the previous definition 2024-05-22T08:46:15,805 214 | # define _XOPEN_SOURCE 700 2024-05-22T08:46:15,805 | 2024-05-22T08:46:15,827 pydnj.c: In function ‘py_build’: 2024-05-22T08:46:15,828 pydnj.c:165:9: warning: implicit declaration of function ‘omp_get_num_procs’ [-Wimplicit-function-declaration] 2024-05-22T08:46:15,828 165 | p = omp_get_num_procs(); 2024-05-22T08:46:15,829 | ^~~~~~~~~~~~~~~~~ 2024-05-22T08:46:15,949 pydnj.c:169:5: warning: ‘free’ called on pointer returned from a mismatched allocation function [-Wmismatched-dealloc] 2024-05-22T08:46:15,949 169 | free(file); 2024-05-22T08:46:15,950 | ^~~~~~~~~~ 2024-05-22T08:46:15,950 pydnj.c:125:12: note: returned from ‘fopen’ 2024-05-22T08:46:15,951 125 | file = fopen(inputfilename, "r"); 2024-05-22T08:46:15,951 | ^~~~~~~~~~~~~~~~~~~~~~~~~ 2024-05-22T08:46:16,026 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Idnjheaders -I/usr/include/python3.11 -c qseqs.c -o build/temp.linux-armv7l-cpython-311/qseqs.o -fopenmp 2024-05-22T08:46:16,234 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Idnjheaders -I/usr/include/python3.11 -c str.c -o build/temp.linux-armv7l-cpython-311/str.o -fopenmp 2024-05-22T08:46:16,345 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Idnjheaders -I/usr/include/python3.11 -c tmp.c -o build/temp.linux-armv7l-cpython-311/tmp.o -fopenmp 2024-05-22T08:46:16,541 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Idnjheaders -I/usr/include/python3.11 -c vector.c -o build/temp.linux-armv7l-cpython-311/vector.o -fopenmp 2024-05-22T08:46:16,704 arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/bytescale.o build/temp.linux-armv7l-cpython-311/dnj.o build/temp.linux-armv7l-cpython-311/filebuff.o build/temp.linux-armv7l-cpython-311/hclust.o build/temp.linux-armv7l-cpython-311/matrix.o build/temp.linux-armv7l-cpython-311/mman.o build/temp.linux-armv7l-cpython-311/nj.o build/temp.linux-armv7l-cpython-311/nwck.o build/temp.linux-armv7l-cpython-311/pherror.o build/temp.linux-armv7l-cpython-311/phy.o build/temp.linux-armv7l-cpython-311/pydnj.o build/temp.linux-armv7l-cpython-311/qseqs.o build/temp.linux-armv7l-cpython-311/str.o build/temp.linux-armv7l-cpython-311/tmp.o build/temp.linux-armv7l-cpython-311/vector.o -L/usr/lib/arm-linux-gnueabihf -lz -o build/lib.linux-armv7l-cpython-311/dnj.cpython-311-arm-linux-gnueabihf.so -fopenmp 2024-05-22T08:46:16,903 /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. 2024-05-22T08:46:16,904 !! 2024-05-22T08:46:16,905 ******************************************************************************** 2024-05-22T08:46:16,906 Please avoid running ``setup.py`` directly. 2024-05-22T08:46:16,906 Instead, use pypa/build, pypa/installer or other 2024-05-22T08:46:16,907 standards-based tools. 2024-05-22T08:46:16,909 See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. 2024-05-22T08:46:16,909 ******************************************************************************** 2024-05-22T08:46:16,910 !! 2024-05-22T08:46:16,911 self.initialize_options() 2024-05-22T08:46:16,932 installing to build/bdist.linux-armv7l/wheel 2024-05-22T08:46:16,932 running install 2024-05-22T08:46:16,957 running install_lib 2024-05-22T08:46:16,983 creating build/bdist.linux-armv7l 2024-05-22T08:46:16,984 creating build/bdist.linux-armv7l/wheel 2024-05-22T08:46:16,985 copying build/lib.linux-armv7l-cpython-311/toolutils.py -> build/bdist.linux-armv7l/wheel 2024-05-22T08:46:16,988 copying build/lib.linux-armv7l-cpython-311/nj.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel 2024-05-22T08:46:16,992 copying build/lib.linux-armv7l-cpython-311/dnj.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel 2024-05-22T08:46:17,002 copying build/lib.linux-armv7l-cpython-311/kssd.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel 2024-05-22T08:46:17,013 copying build/lib.linux-armv7l-cpython-311/kssdtree.py -> build/bdist.linux-armv7l/wheel 2024-05-22T08:46:17,015 running install_egg_info 2024-05-22T08:46:17,049 Copying kssdtree.egg-info to build/bdist.linux-armv7l/wheel/kssdtree-1.1.3-py3.11.egg-info 2024-05-22T08:46:17,062 running install_scripts 2024-05-22T08:46:17,113 creating build/bdist.linux-armv7l/wheel/kssdtree-1.1.3.dist-info/WHEEL 2024-05-22T08:46:17,116 creating '/tmp/pip-wheel-7vyebjvm/kssdtree-1.1.3-cp311-cp311-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2024-05-22T08:46:17,182 adding 'dnj.cpython-311-arm-linux-gnueabihf.so' 2024-05-22T08:46:17,267 adding 'kssd.cpython-311-arm-linux-gnueabihf.so' 2024-05-22T08:46:17,272 adding 'kssdtree.py' 2024-05-22T08:46:17,292 adding 'nj.cpython-311-arm-linux-gnueabihf.so' 2024-05-22T08:46:17,295 adding 'toolutils.py' 2024-05-22T08:46:17,297 adding 'kssdtree-1.1.3.dist-info/METADATA' 2024-05-22T08:46:17,298 adding 'kssdtree-1.1.3.dist-info/WHEEL' 2024-05-22T08:46:17,299 adding 'kssdtree-1.1.3.dist-info/dependency_links.txt' 2024-05-22T08:46:17,300 adding 'kssdtree-1.1.3.dist-info/top_level.txt' 2024-05-22T08:46:17,300 adding 'kssdtree-1.1.3.dist-info/RECORD' 2024-05-22T08:46:17,306 removing build/bdist.linux-armv7l/wheel 2024-05-22T08:46:17,454 Building wheel for kssdtree (setup.py): finished with status 'done' 2024-05-22T08:46:17,460 Created wheel for kssdtree: filename=kssdtree-1.1.3-cp311-cp311-linux_armv7l.whl size=379671 sha256=6b76f3b3f532934ad49a829e7bf8176af580f4687f1491c49c3f571bf081f961 2024-05-22T08:46:17,461 Stored in directory: /tmp/pip-ephem-wheel-cache-_ju3fg0k/wheels/f6/8f/79/68339306cb5cee392d01a3dbb70ebc48692bc279644ca2caea 2024-05-22T08:46:17,470 Successfully built kssdtree 2024-05-22T08:46:17,485 Removed build tracker: '/tmp/pip-build-tracker-r3eti7fa'