2024-05-22T09:47:30,716 Created temporary directory: /tmp/pip-build-tracker-xa9at6z3 2024-05-22T09:47:30,717 Initialized build tracking at /tmp/pip-build-tracker-xa9at6z3 2024-05-22T09:47:30,718 Created build tracker: /tmp/pip-build-tracker-xa9at6z3 2024-05-22T09:47:30,718 Entered build tracker: /tmp/pip-build-tracker-xa9at6z3 2024-05-22T09:47:30,719 Created temporary directory: /tmp/pip-wheel-2nxpm3wt 2024-05-22T09:47:30,722 Created temporary directory: /tmp/pip-ephem-wheel-cache-bd1bgyns 2024-05-22T09:47:30,744 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2024-05-22T09:47:30,747 2 location(s) to search for versions of funvip: 2024-05-22T09:47:30,747 * https://pypi.org/simple/funvip/ 2024-05-22T09:47:30,747 * https://www.piwheels.org/simple/funvip/ 2024-05-22T09:47:30,748 Fetching project page and analyzing links: https://pypi.org/simple/funvip/ 2024-05-22T09:47:30,749 Getting page https://pypi.org/simple/funvip/ 2024-05-22T09:47:30,750 Found index url https://pypi.org/simple/ 2024-05-22T09:47:30,962 Fetched page https://pypi.org/simple/funvip/ as application/vnd.pypi.simple.v1+json 2024-05-22T09:47:30,965 Skipping link: No binaries permitted for funvip: https://files.pythonhosted.org/packages/a0/b5/0d65eb17b155c93a7022978aa4521fa29d234a099409863a5b08a8e7e122/FunVIP-0.3.20-py3-none-any.whl (from https://pypi.org/simple/funvip/) (requires-python:<3.13,>3.8) 2024-05-22T09:47:30,966 Found link https://files.pythonhosted.org/packages/9b/df/34c36f5642250c040b8ef6fd2f6c11699fe52dca76ef2697e566a4101185/funvip-0.3.20.tar.gz (from https://pypi.org/simple/funvip/) (requires-python:<3.13,>3.8), version: 0.3.20 2024-05-22T09:47:30,967 Skipping link: No binaries permitted for funvip: https://files.pythonhosted.org/packages/fe/66/8319c3a6cd421da1f2a7febf8bc5042089d0f7480d31d988b9dc02b348cc/FunVIP-0.3.21-py3-none-any.whl (from https://pypi.org/simple/funvip/) (requires-python:<3.13,>3.8) 2024-05-22T09:47:30,968 Found link https://files.pythonhosted.org/packages/15/a7/1458c95468d22392f0d1f5366422c5e3325b2b73fb00ead5645ce60aefd3/funvip-0.3.21.tar.gz (from https://pypi.org/simple/funvip/) (requires-python:<3.13,>3.8), version: 0.3.21 2024-05-22T09:47:30,968 Skipping link: No binaries permitted for funvip: https://files.pythonhosted.org/packages/09/25/d7edd31afd3b5a9c32fd19315aa55fe62eeedbb6ad8efd581f1197da518e/FunVIP-0.3.22-py3-none-any.whl (from https://pypi.org/simple/funvip/) (requires-python:<3.13,>3.8) 2024-05-22T09:47:30,969 Found link https://files.pythonhosted.org/packages/77/eb/6c02451b239042d60f03c7ed10e91d4c53c4e227d2eb1d49aa8b2246a973/funvip-0.3.22.tar.gz (from https://pypi.org/simple/funvip/) (requires-python:<3.13,>3.8), version: 0.3.22 2024-05-22T09:47:30,970 Skipping link: No binaries permitted for funvip: https://files.pythonhosted.org/packages/0b/b3/c6fe7d14fc8dd1ab7b79c3824e98b5ac7b9a6cc4dc3f5af5040acc7e6982/FunVIP-0.3.22.1-py3-none-any.whl (from https://pypi.org/simple/funvip/) (requires-python:<3.13,>3.8) 2024-05-22T09:47:30,971 Found link https://files.pythonhosted.org/packages/a4/d6/c50c9574e9a58a3b2fb79c9e42d1b46e11aab893e33372d4039e8111980b/funvip-0.3.22.1.tar.gz (from https://pypi.org/simple/funvip/) (requires-python:<3.13,>3.8), version: 0.3.22.1 2024-05-22T09:47:30,972 Fetching project page and analyzing links: https://www.piwheels.org/simple/funvip/ 2024-05-22T09:47:30,973 Getting page https://www.piwheels.org/simple/funvip/ 2024-05-22T09:47:30,974 Found index url https://www.piwheels.org/simple/ 2024-05-22T09:47:31,229 Fetched page https://www.piwheels.org/simple/funvip/ as text/html 2024-05-22T09:47:31,231 Skipping link: No binaries permitted for funvip: https://www.piwheels.org/simple/funvip/FunVIP-0.3.22-py3-none-any.whl#sha256=dd2db50f85481b3ce82217522dd0cf0afb20263cc65856f59e25fce5d1ce09d1 (from https://www.piwheels.org/simple/funvip/) (requires-python:<3.13,>3.8) 2024-05-22T09:47:31,231 Skipping link: No binaries permitted for funvip: https://www.piwheels.org/simple/funvip/FunVIP-0.3.21-py3-none-any.whl#sha256=e1863d6683eb41c991cce86262ef477d12ad652320dfb6fa0f5b9d184d7c42c6 (from https://www.piwheels.org/simple/funvip/) (requires-python:<3.13,>3.8) 2024-05-22T09:47:31,232 Skipping link: No binaries permitted for funvip: https://www.piwheels.org/simple/funvip/FunVIP-0.3.20-py3-none-any.whl#sha256=c93795ba7644b586c23cea4f5a6c421915b36ff5f5be700ee1a37d7857f03e3b (from https://www.piwheels.org/simple/funvip/) (requires-python:<3.13,>3.8) 2024-05-22T09:47:31,233 Skipping link: not a file: https://www.piwheels.org/simple/funvip/ 2024-05-22T09:47:31,234 Skipping link: not a file: https://pypi.org/simple/funvip/ 2024-05-22T09:47:31,252 Given no hashes to check 1 links for project 'funvip': discarding no candidates 2024-05-22T09:47:31,270 Collecting funvip==0.3.22.1 2024-05-22T09:47:31,272 Created temporary directory: /tmp/pip-unpack-81bksty8 2024-05-22T09:47:31,706 Downloading funvip-0.3.22.1.tar.gz (59.5 MB) 2024-05-22T09:47:45,199 Added funvip==0.3.22.1 from https://files.pythonhosted.org/packages/a4/d6/c50c9574e9a58a3b2fb79c9e42d1b46e11aab893e33372d4039e8111980b/funvip-0.3.22.1.tar.gz to build tracker '/tmp/pip-build-tracker-xa9at6z3' 2024-05-22T09:47:45,205 Created temporary directory: /tmp/pip-build-env-tzvozd4z 2024-05-22T09:47:45,210 Installing build dependencies: started 2024-05-22T09:47:45,211 Running command pip subprocess to install build dependencies 2024-05-22T09:47:46,383 Using pip 24.0 from /usr/local/lib/python3.11/dist-packages/pip (python 3.11) 2024-05-22T09:47:46,880 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2024-05-22T09:47:48,419 Collecting setuptools 2024-05-22T09:47:48,442 Using cached https://www.piwheels.org/simple/setuptools/setuptools-70.0.0-py3-none-any.whl (863 kB) 2024-05-22T09:47:48,720 Collecting setuptools-ext 2024-05-22T09:47:48,748 Using cached https://www.piwheels.org/simple/setuptools-ext/setuptools_ext-0.9-py3-none-any.whl (7.2 kB) 2024-05-22T09:47:48,965 Collecting wheel 2024-05-22T09:47:49,039 Using cached https://www.piwheels.org/simple/wheel/wheel-0.43.0-py3-none-any.whl (65 kB) 2024-05-22T09:47:51,830 Installing collected packages: wheel, setuptools, setuptools-ext 2024-05-22T09:47:52,055 Creating /tmp/pip-build-env-tzvozd4z/overlay/local/bin 2024-05-22T09:47:52,057 changing mode of /tmp/pip-build-env-tzvozd4z/overlay/local/bin/wheel to 755 2024-05-22T09:47:54,479 Successfully installed setuptools-70.0.0 setuptools-ext-0.9 wheel-0.43.0 2024-05-22T09:47:54,996 Installing build dependencies: finished with status 'done' 2024-05-22T09:47:55,000 Getting requirements to build wheel: started 2024-05-22T09:47:55,001 Running command Getting requirements to build wheel 2024-05-22T09:47:56,101 running egg_info 2024-05-22T09:47:56,106 writing FunVIP.egg-info/PKG-INFO 2024-05-22T09:47:56,114 writing dependency_links to FunVIP.egg-info/dependency_links.txt 2024-05-22T09:47:56,118 writing entry points to FunVIP.egg-info/entry_points.txt 2024-05-22T09:47:56,123 writing requirements to FunVIP.egg-info/requires.txt 2024-05-22T09:47:56,126 writing top-level names to FunVIP.egg-info/top_level.txt 2024-05-22T09:47:56,600 reading manifest file 'FunVIP.egg-info/SOURCES.txt' 2024-05-22T09:47:56,614 reading manifest template 'MANIFEST.in' 2024-05-22T09:47:56,697 adding license file 'LICENSE' 2024-05-22T09:47:56,708 writing manifest file 'FunVIP.egg-info/SOURCES.txt' 2024-05-22T09:47:56,844 Getting requirements to build wheel: finished with status 'done' 2024-05-22T09:47:56,861 Created temporary directory: /tmp/pip-modern-metadata-ued2l36q 2024-05-22T09:47:56,864 Preparing metadata (pyproject.toml): started 2024-05-22T09:47:56,866 Running command Preparing metadata (pyproject.toml) 2024-05-22T09:47:57,663 running dist_info 2024-05-22T09:47:57,668 creating /tmp/pip-modern-metadata-ued2l36q/FunVIP.egg-info 2024-05-22T09:47:57,672 writing /tmp/pip-modern-metadata-ued2l36q/FunVIP.egg-info/PKG-INFO 2024-05-22T09:47:57,675 writing dependency_links to /tmp/pip-modern-metadata-ued2l36q/FunVIP.egg-info/dependency_links.txt 2024-05-22T09:47:57,677 writing entry points to /tmp/pip-modern-metadata-ued2l36q/FunVIP.egg-info/entry_points.txt 2024-05-22T09:47:57,680 writing requirements to /tmp/pip-modern-metadata-ued2l36q/FunVIP.egg-info/requires.txt 2024-05-22T09:47:57,681 writing top-level names to /tmp/pip-modern-metadata-ued2l36q/FunVIP.egg-info/top_level.txt 2024-05-22T09:47:57,683 writing manifest file '/tmp/pip-modern-metadata-ued2l36q/FunVIP.egg-info/SOURCES.txt' 2024-05-22T09:47:57,705 reading manifest file '/tmp/pip-modern-metadata-ued2l36q/FunVIP.egg-info/SOURCES.txt' 2024-05-22T09:47:57,707 reading manifest template 'MANIFEST.in' 2024-05-22T09:47:57,792 adding license file 'LICENSE' 2024-05-22T09:47:57,801 writing manifest file '/tmp/pip-modern-metadata-ued2l36q/FunVIP.egg-info/SOURCES.txt' 2024-05-22T09:47:57,803 creating '/tmp/pip-modern-metadata-ued2l36q/FunVIP-0.3.22.1.dist-info' 2024-05-22T09:47:57,959 Preparing metadata (pyproject.toml): finished with status 'done' 2024-05-22T09:47:57,964 Source in /tmp/pip-wheel-2nxpm3wt/funvip_9d7e510741ce484abcedce54baed48bb has version 0.3.22.1, which satisfies requirement funvip==0.3.22.1 from https://files.pythonhosted.org/packages/a4/d6/c50c9574e9a58a3b2fb79c9e42d1b46e11aab893e33372d4039e8111980b/funvip-0.3.22.1.tar.gz 2024-05-22T09:47:57,965 Removed funvip==0.3.22.1 from https://files.pythonhosted.org/packages/a4/d6/c50c9574e9a58a3b2fb79c9e42d1b46e11aab893e33372d4039e8111980b/funvip-0.3.22.1.tar.gz from build tracker '/tmp/pip-build-tracker-xa9at6z3' 2024-05-22T09:47:57,970 Created temporary directory: /tmp/pip-unpack-wb28583n 2024-05-22T09:47:57,971 Created temporary directory: /tmp/pip-unpack-5uw_fe73 2024-05-22T09:47:57,999 Building wheels for collected packages: funvip 2024-05-22T09:47:58,003 Created temporary directory: /tmp/pip-wheel-vimpv5g9 2024-05-22T09:47:58,003 Destination directory: /tmp/pip-wheel-vimpv5g9 2024-05-22T09:47:58,005 Building wheel for funvip (pyproject.toml): started 2024-05-22T09:47:58,007 Running command Building wheel for funvip (pyproject.toml) 2024-05-22T09:47:58,784 running bdist_wheel 2024-05-22T09:47:58,800 running build 2024-05-22T09:47:58,801 running build_py 2024-05-22T09:47:58,805 creating build 2024-05-22T09:47:58,806 creating build/lib 2024-05-22T09:47:58,807 creating build/lib/funvip 2024-05-22T09:47:58,808 copying funvip/FunVIP_GUI.py -> build/lib/funvip 2024-05-22T09:47:58,810 copying funvip/main.py -> build/lib/funvip 2024-05-22T09:47:58,818 copying funvip/__init__.py -> build/lib/funvip 2024-05-22T09:47:58,820 creating build/lib/funvip/data 2024-05-22T09:47:58,821 copying funvip/data/__init__.py -> build/lib/funvip/data 2024-05-22T09:47:58,824 creating build/lib/funvip/src 2024-05-22T09:47:58,825 copying funvip/src/logger.py -> build/lib/funvip/src 2024-05-22T09:47:58,827 copying funvip/src/dataset.py -> build/lib/funvip/src 2024-05-22T09:47:58,829 copying funvip/src/tree_interpretation.py -> build/lib/funvip/src 2024-05-22T09:47:58,833 copying funvip/src/reporter.py -> build/lib/funvip/src 2024-05-22T09:47:58,835 copying funvip/src/logics.py -> build/lib/funvip/src 2024-05-22T09:47:58,837 copying funvip/src/validation.py -> build/lib/funvip/src 2024-05-22T09:47:58,839 copying funvip/src/validate_input.py -> build/lib/funvip/src 2024-05-22T09:47:58,842 copying funvip/src/validate_option.py -> build/lib/funvip/src 2024-05-22T09:47:58,845 copying funvip/src/initialize.py -> build/lib/funvip/src 2024-05-22T09:47:58,847 copying funvip/src/hasher.py -> build/lib/funvip/src 2024-05-22T09:47:58,849 copying funvip/src/save.py -> build/lib/funvip/src 2024-05-22T09:47:58,851 copying funvip/src/command.py -> build/lib/funvip/src 2024-05-22T09:47:58,853 copying funvip/src/concatenate.py -> build/lib/funvip/src 2024-05-22T09:47:58,856 copying funvip/src/ext.py -> build/lib/funvip/src 2024-05-22T09:47:58,858 copying funvip/src/opt_generator.py -> build/lib/funvip/src 2024-05-22T09:47:58,860 copying funvip/src/tree_interpretation_pipe.py -> build/lib/funvip/src 2024-05-22T09:47:58,863 copying funvip/src/__init__.py -> build/lib/funvip/src 2024-05-22T09:47:58,864 copying funvip/src/ncbi.py -> build/lib/funvip/src 2024-05-22T09:47:58,866 copying funvip/src/tree.py -> build/lib/funvip/src 2024-05-22T09:47:58,868 copying funvip/src/trim.py -> build/lib/funvip/src 2024-05-22T09:47:58,870 copying funvip/src/search.py -> build/lib/funvip/src 2024-05-22T09:47:58,873 copying funvip/src/align.py -> build/lib/funvip/src 2024-05-22T09:47:58,875 copying funvip/src/version.py -> build/lib/funvip/src 2024-05-22T09:47:58,877 copying funvip/src/cluster.py -> build/lib/funvip/src 2024-05-22T09:47:58,879 copying funvip/src/modeltest.py -> build/lib/funvip/src 2024-05-22T09:47:58,882 copying funvip/src/tool.py -> build/lib/funvip/src 2024-05-22T09:47:58,885 creating build/lib/funvip/external 2024-05-22T09:47:58,885 copying funvip/external/__init__.py -> build/lib/funvip/external 2024-05-22T09:47:58,887 running egg_info 2024-05-22T09:47:58,891 writing FunVIP.egg-info/PKG-INFO 2024-05-22T09:47:58,894 writing dependency_links to FunVIP.egg-info/dependency_links.txt 2024-05-22T09:47:58,896 writing entry points to FunVIP.egg-info/entry_points.txt 2024-05-22T09:47:58,898 writing requirements to FunVIP.egg-info/requires.txt 2024-05-22T09:47:58,899 writing top-level names to FunVIP.egg-info/top_level.txt 2024-05-22T09:47:58,915 reading manifest file 'FunVIP.egg-info/SOURCES.txt' 2024-05-22T09:47:58,921 reading manifest template 'MANIFEST.in' 2024-05-22T09:47:58,999 adding license file 'LICENSE' 2024-05-22T09:47:59,010 writing manifest file 'FunVIP.egg-info/SOURCES.txt' 2024-05-22T09:47:59,012 /tmp/pip-build-env-tzvozd4z/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'funvip.external.BLAST_Windows' is absent from the `packages` configuration. 2024-05-22T09:47:59,013 !! 2024-05-22T09:47:59,014 ******************************************************************************** 2024-05-22T09:47:59,015 ############################ 2024-05-22T09:47:59,016 # Package would be ignored # 2024-05-22T09:47:59,016 ############################ 2024-05-22T09:47:59,017 Python recognizes 'funvip.external.BLAST_Windows' as an importable package[^1], 2024-05-22T09:47:59,017 but it is absent from setuptools' `packages` configuration. 2024-05-22T09:47:59,018 This leads to an ambiguous overall configuration. If you want to distribute this 2024-05-22T09:47:59,019 package, please make sure that 'funvip.external.BLAST_Windows' is explicitly added 2024-05-22T09:47:59,019 to the `packages` configuration field. 2024-05-22T09:47:59,021 Alternatively, you can also rely on setuptools' discovery methods 2024-05-22T09:47:59,021 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-05-22T09:47:59,022 instead of `find_packages(...)`/`find:`). 2024-05-22T09:47:59,023 You can read more about "package discovery" on setuptools documentation page: 2024-05-22T09:47:59,024 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-05-22T09:47:59,025 If you don't want 'funvip.external.BLAST_Windows' to be distributed and are 2024-05-22T09:47:59,026 already explicitly excluding 'funvip.external.BLAST_Windows' via 2024-05-22T09:47:59,026 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-05-22T09:47:59,027 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-05-22T09:47:59,027 combination with a more fine grained `package-data` configuration. 2024-05-22T09:47:59,028 You can read more about "package data files" on setuptools documentation page: 2024-05-22T09:47:59,029 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-05-22T09:47:59,031 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-05-22T09:47:59,031 even if it does not contain any `.py` files. 2024-05-22T09:47:59,032 On the other hand, currently there is no concept of package data 2024-05-22T09:47:59,033 directory, all directories are treated like packages. 2024-05-22T09:47:59,033 ******************************************************************************** 2024-05-22T09:47:59,034 !! 2024-05-22T09:47:59,034 check.warn(importable) 2024-05-22T09:47:59,034 /tmp/pip-build-env-tzvozd4z/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'funvip.external.BLAST_Windows.bin' is absent from the `packages` configuration. 2024-05-22T09:47:59,035 !! 2024-05-22T09:47:59,036 ******************************************************************************** 2024-05-22T09:47:59,036 ############################ 2024-05-22T09:47:59,036 # Package would be ignored # 2024-05-22T09:47:59,037 ############################ 2024-05-22T09:47:59,037 Python recognizes 'funvip.external.BLAST_Windows.bin' as an importable package[^1], 2024-05-22T09:47:59,038 but it is absent from setuptools' `packages` configuration. 2024-05-22T09:47:59,038 This leads to an ambiguous overall configuration. If you want to distribute this 2024-05-22T09:47:59,039 package, please make sure that 'funvip.external.BLAST_Windows.bin' is explicitly added 2024-05-22T09:47:59,039 to the `packages` configuration field. 2024-05-22T09:47:59,040 Alternatively, you can also rely on setuptools' discovery methods 2024-05-22T09:47:59,040 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-05-22T09:47:59,041 instead of `find_packages(...)`/`find:`). 2024-05-22T09:47:59,042 You can read more about "package discovery" on setuptools documentation page: 2024-05-22T09:47:59,043 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-05-22T09:47:59,043 If you don't want 'funvip.external.BLAST_Windows.bin' to be distributed and are 2024-05-22T09:47:59,044 already explicitly excluding 'funvip.external.BLAST_Windows.bin' via 2024-05-22T09:47:59,044 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-05-22T09:47:59,045 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-05-22T09:47:59,045 combination with a more fine grained `package-data` configuration. 2024-05-22T09:47:59,046 You can read more about "package data files" on setuptools documentation page: 2024-05-22T09:47:59,047 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-05-22T09:47:59,049 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-05-22T09:47:59,049 even if it does not contain any `.py` files. 2024-05-22T09:47:59,050 On the other hand, currently there is no concept of package data 2024-05-22T09:47:59,050 directory, all directories are treated like packages. 2024-05-22T09:47:59,051 ******************************************************************************** 2024-05-22T09:47:59,052 !! 2024-05-22T09:47:59,052 check.warn(importable) 2024-05-22T09:47:59,053 /tmp/pip-build-env-tzvozd4z/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'funvip.external.BLAST_Windows.doc' is absent from the `packages` configuration. 2024-05-22T09:47:59,054 !! 2024-05-22T09:47:59,055 ******************************************************************************** 2024-05-22T09:47:59,055 ############################ 2024-05-22T09:47:59,056 # Package would be ignored # 2024-05-22T09:47:59,057 ############################ 2024-05-22T09:47:59,057 Python recognizes 'funvip.external.BLAST_Windows.doc' as an importable package[^1], 2024-05-22T09:47:59,058 but it is absent from setuptools' `packages` configuration. 2024-05-22T09:47:59,059 This leads to an ambiguous overall configuration. If you want to distribute this 2024-05-22T09:47:59,059 package, please make sure that 'funvip.external.BLAST_Windows.doc' is explicitly added 2024-05-22T09:47:59,060 to the `packages` configuration field. 2024-05-22T09:47:59,061 Alternatively, you can also rely on setuptools' discovery methods 2024-05-22T09:47:59,061 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-05-22T09:47:59,061 instead of `find_packages(...)`/`find:`). 2024-05-22T09:47:59,062 You can read more about "package discovery" on setuptools documentation page: 2024-05-22T09:47:59,063 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-05-22T09:47:59,064 If you don't want 'funvip.external.BLAST_Windows.doc' to be distributed and are 2024-05-22T09:47:59,065 already explicitly excluding 'funvip.external.BLAST_Windows.doc' via 2024-05-22T09:47:59,065 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-05-22T09:47:59,066 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-05-22T09:47:59,066 combination with a more fine grained `package-data` configuration. 2024-05-22T09:47:59,067 You can read more about "package data files" on setuptools documentation page: 2024-05-22T09:47:59,068 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-05-22T09:47:59,069 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-05-22T09:47:59,070 even if it does not contain any `.py` files. 2024-05-22T09:47:59,070 On the other hand, currently there is no concept of package data 2024-05-22T09:47:59,071 directory, all directories are treated like packages. 2024-05-22T09:47:59,071 ******************************************************************************** 2024-05-22T09:47:59,072 !! 2024-05-22T09:47:59,073 check.warn(importable) 2024-05-22T09:47:59,074 /tmp/pip-build-env-tzvozd4z/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'funvip.external.FastTree_Windows' is absent from the `packages` configuration. 2024-05-22T09:47:59,074 !! 2024-05-22T09:47:59,075 ******************************************************************************** 2024-05-22T09:47:59,076 ############################ 2024-05-22T09:47:59,077 # Package would be ignored # 2024-05-22T09:47:59,077 ############################ 2024-05-22T09:47:59,078 Python recognizes 'funvip.external.FastTree_Windows' as an importable package[^1], 2024-05-22T09:47:59,078 but it is absent from setuptools' `packages` configuration. 2024-05-22T09:47:59,079 This leads to an ambiguous overall configuration. If you want to distribute this 2024-05-22T09:47:59,080 package, please make sure that 'funvip.external.FastTree_Windows' is explicitly added 2024-05-22T09:47:59,081 to the `packages` configuration field. 2024-05-22T09:47:59,082 Alternatively, you can also rely on setuptools' discovery methods 2024-05-22T09:47:59,082 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-05-22T09:47:59,083 instead of `find_packages(...)`/`find:`). 2024-05-22T09:47:59,084 You can read more about "package discovery" on setuptools documentation page: 2024-05-22T09:47:59,085 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-05-22T09:47:59,086 If you don't want 'funvip.external.FastTree_Windows' to be distributed and are 2024-05-22T09:47:59,087 already explicitly excluding 'funvip.external.FastTree_Windows' via 2024-05-22T09:47:59,088 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-05-22T09:47:59,088 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-05-22T09:47:59,089 combination with a more fine grained `package-data` configuration. 2024-05-22T09:47:59,090 You can read more about "package data files" on setuptools documentation page: 2024-05-22T09:47:59,091 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-05-22T09:47:59,092 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-05-22T09:47:59,093 even if it does not contain any `.py` files. 2024-05-22T09:47:59,093 On the other hand, currently there is no concept of package data 2024-05-22T09:47:59,094 directory, all directories are treated like packages. 2024-05-22T09:47:59,094 ******************************************************************************** 2024-05-22T09:47:59,095 !! 2024-05-22T09:47:59,095 check.warn(importable) 2024-05-22T09:47:59,096 /tmp/pip-build-env-tzvozd4z/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'funvip.external.RAxML_Windows' is absent from the `packages` configuration. 2024-05-22T09:47:59,096 !! 2024-05-22T09:47:59,097 ******************************************************************************** 2024-05-22T09:47:59,098 ############################ 2024-05-22T09:47:59,098 # Package would be ignored # 2024-05-22T09:47:59,099 ############################ 2024-05-22T09:47:59,099 Python recognizes 'funvip.external.RAxML_Windows' as an importable package[^1], 2024-05-22T09:47:59,100 but it is absent from setuptools' `packages` configuration. 2024-05-22T09:47:59,101 This leads to an ambiguous overall configuration. If you want to distribute this 2024-05-22T09:47:59,101 package, please make sure that 'funvip.external.RAxML_Windows' is explicitly added 2024-05-22T09:47:59,102 to the `packages` configuration field. 2024-05-22T09:47:59,103 Alternatively, you can also rely on setuptools' discovery methods 2024-05-22T09:47:59,104 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-05-22T09:47:59,104 instead of `find_packages(...)`/`find:`). 2024-05-22T09:47:59,105 You can read more about "package discovery" on setuptools documentation page: 2024-05-22T09:47:59,106 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-05-22T09:47:59,107 If you don't want 'funvip.external.RAxML_Windows' to be distributed and are 2024-05-22T09:47:59,108 already explicitly excluding 'funvip.external.RAxML_Windows' via 2024-05-22T09:47:59,108 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-05-22T09:47:59,109 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-05-22T09:47:59,109 combination with a more fine grained `package-data` configuration. 2024-05-22T09:47:59,110 You can read more about "package data files" on setuptools documentation page: 2024-05-22T09:47:59,111 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-05-22T09:47:59,113 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-05-22T09:47:59,114 even if it does not contain any `.py` files. 2024-05-22T09:47:59,114 On the other hand, currently there is no concept of package data 2024-05-22T09:47:59,115 directory, all directories are treated like packages. 2024-05-22T09:47:59,115 ******************************************************************************** 2024-05-22T09:47:59,116 !! 2024-05-22T09:47:59,117 check.warn(importable) 2024-05-22T09:47:59,117 /tmp/pip-build-env-tzvozd4z/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'funvip.external.iqtree' is absent from the `packages` configuration. 2024-05-22T09:47:59,118 !! 2024-05-22T09:47:59,119 ******************************************************************************** 2024-05-22T09:47:59,120 ############################ 2024-05-22T09:47:59,120 # Package would be ignored # 2024-05-22T09:47:59,121 ############################ 2024-05-22T09:47:59,121 Python recognizes 'funvip.external.iqtree' as an importable package[^1], 2024-05-22T09:47:59,122 but it is absent from setuptools' `packages` configuration. 2024-05-22T09:47:59,123 This leads to an ambiguous overall configuration. If you want to distribute this 2024-05-22T09:47:59,123 package, please make sure that 'funvip.external.iqtree' is explicitly added 2024-05-22T09:47:59,123 to the `packages` configuration field. 2024-05-22T09:47:59,124 Alternatively, you can also rely on setuptools' discovery methods 2024-05-22T09:47:59,125 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-05-22T09:47:59,125 instead of `find_packages(...)`/`find:`). 2024-05-22T09:47:59,126 You can read more about "package discovery" on setuptools documentation page: 2024-05-22T09:47:59,127 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-05-22T09:47:59,128 If you don't want 'funvip.external.iqtree' to be distributed and are 2024-05-22T09:47:59,129 already explicitly excluding 'funvip.external.iqtree' via 2024-05-22T09:47:59,129 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-05-22T09:47:59,130 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-05-22T09:47:59,130 combination with a more fine grained `package-data` configuration. 2024-05-22T09:47:59,131 You can read more about "package data files" on setuptools documentation page: 2024-05-22T09:47:59,132 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-05-22T09:47:59,134 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-05-22T09:47:59,135 even if it does not contain any `.py` files. 2024-05-22T09:47:59,135 On the other hand, currently there is no concept of package data 2024-05-22T09:47:59,136 directory, all directories are treated like packages. 2024-05-22T09:47:59,136 ******************************************************************************** 2024-05-22T09:47:59,137 !! 2024-05-22T09:47:59,137 check.warn(importable) 2024-05-22T09:47:59,138 /tmp/pip-build-env-tzvozd4z/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'funvip.external.iqtree.bin' is absent from the `packages` configuration. 2024-05-22T09:47:59,138 !! 2024-05-22T09:47:59,139 ******************************************************************************** 2024-05-22T09:47:59,140 ############################ 2024-05-22T09:47:59,141 # Package would be ignored # 2024-05-22T09:47:59,141 ############################ 2024-05-22T09:47:59,142 Python recognizes 'funvip.external.iqtree.bin' as an importable package[^1], 2024-05-22T09:47:59,142 but it is absent from setuptools' `packages` configuration. 2024-05-22T09:47:59,143 This leads to an ambiguous overall configuration. If you want to distribute this 2024-05-22T09:47:59,144 package, please make sure that 'funvip.external.iqtree.bin' is explicitly added 2024-05-22T09:47:59,144 to the `packages` configuration field. 2024-05-22T09:47:59,145 Alternatively, you can also rely on setuptools' discovery methods 2024-05-22T09:47:59,146 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-05-22T09:47:59,146 instead of `find_packages(...)`/`find:`). 2024-05-22T09:47:59,147 You can read more about "package discovery" on setuptools documentation page: 2024-05-22T09:47:59,149 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-05-22T09:47:59,149 If you don't want 'funvip.external.iqtree.bin' to be distributed and are 2024-05-22T09:47:59,150 already explicitly excluding 'funvip.external.iqtree.bin' via 2024-05-22T09:47:59,150 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-05-22T09:47:59,151 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-05-22T09:47:59,151 combination with a more fine grained `package-data` configuration. 2024-05-22T09:47:59,152 You can read more about "package data files" on setuptools documentation page: 2024-05-22T09:47:59,153 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-05-22T09:47:59,154 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-05-22T09:47:59,154 even if it does not contain any `.py` files. 2024-05-22T09:47:59,155 On the other hand, currently there is no concept of package data 2024-05-22T09:47:59,155 directory, all directories are treated like packages. 2024-05-22T09:47:59,156 ******************************************************************************** 2024-05-22T09:47:59,157 !! 2024-05-22T09:47:59,157 check.warn(importable) 2024-05-22T09:47:59,158 /tmp/pip-build-env-tzvozd4z/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'funvip.external.mmseqs_Windows' is absent from the `packages` configuration. 2024-05-22T09:47:59,158 !! 2024-05-22T09:47:59,159 ******************************************************************************** 2024-05-22T09:47:59,160 ############################ 2024-05-22T09:47:59,161 # Package would be ignored # 2024-05-22T09:47:59,161 ############################ 2024-05-22T09:47:59,162 Python recognizes 'funvip.external.mmseqs_Windows' as an importable package[^1], 2024-05-22T09:47:59,162 but it is absent from setuptools' `packages` configuration. 2024-05-22T09:47:59,164 This leads to an ambiguous overall configuration. If you want to distribute this 2024-05-22T09:47:59,165 package, please make sure that 'funvip.external.mmseqs_Windows' is explicitly added 2024-05-22T09:47:59,165 to the `packages` configuration field. 2024-05-22T09:47:59,167 Alternatively, you can also rely on setuptools' discovery methods 2024-05-22T09:47:59,167 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-05-22T09:47:59,168 instead of `find_packages(...)`/`find:`). 2024-05-22T09:47:59,169 You can read more about "package discovery" on setuptools documentation page: 2024-05-22T09:47:59,170 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-05-22T09:47:59,171 If you don't want 'funvip.external.mmseqs_Windows' to be distributed and are 2024-05-22T09:47:59,172 already explicitly excluding 'funvip.external.mmseqs_Windows' via 2024-05-22T09:47:59,173 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-05-22T09:47:59,173 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-05-22T09:47:59,174 combination with a more fine grained `package-data` configuration. 2024-05-22T09:47:59,175 You can read more about "package data files" on setuptools documentation page: 2024-05-22T09:47:59,176 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-05-22T09:47:59,178 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-05-22T09:47:59,178 even if it does not contain any `.py` files. 2024-05-22T09:47:59,179 On the other hand, currently there is no concept of package data 2024-05-22T09:47:59,180 directory, all directories are treated like packages. 2024-05-22T09:47:59,180 ******************************************************************************** 2024-05-22T09:47:59,181 !! 2024-05-22T09:47:59,181 check.warn(importable) 2024-05-22T09:47:59,182 /tmp/pip-build-env-tzvozd4z/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'funvip.external.mmseqs_Windows.bin' is absent from the `packages` configuration. 2024-05-22T09:47:59,182 !! 2024-05-22T09:47:59,183 ******************************************************************************** 2024-05-22T09:47:59,183 ############################ 2024-05-22T09:47:59,184 # Package would be ignored # 2024-05-22T09:47:59,184 ############################ 2024-05-22T09:47:59,185 Python recognizes 'funvip.external.mmseqs_Windows.bin' as an importable package[^1], 2024-05-22T09:47:59,185 but it is absent from setuptools' `packages` configuration. 2024-05-22T09:47:59,186 This leads to an ambiguous overall configuration. If you want to distribute this 2024-05-22T09:47:59,187 package, please make sure that 'funvip.external.mmseqs_Windows.bin' is explicitly added 2024-05-22T09:47:59,187 to the `packages` configuration field. 2024-05-22T09:47:59,188 Alternatively, you can also rely on setuptools' discovery methods 2024-05-22T09:47:59,188 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-05-22T09:47:59,189 instead of `find_packages(...)`/`find:`). 2024-05-22T09:47:59,190 You can read more about "package discovery" on setuptools documentation page: 2024-05-22T09:47:59,191 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-05-22T09:47:59,192 If you don't want 'funvip.external.mmseqs_Windows.bin' to be distributed and are 2024-05-22T09:47:59,193 already explicitly excluding 'funvip.external.mmseqs_Windows.bin' via 2024-05-22T09:47:59,193 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-05-22T09:47:59,194 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-05-22T09:47:59,207 combination with a more fine grained `package-data` configuration. 2024-05-22T09:47:59,254 You can read more about "package data files" on setuptools documentation page: 2024-05-22T09:47:59,286 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-05-22T09:47:59,334 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-05-22T09:47:59,350 even if it does not contain any `.py` files. 2024-05-22T09:47:59,369 On the other hand, currently there is no concept of package data 2024-05-22T09:47:59,389 directory, all directories are treated like packages. 2024-05-22T09:47:59,409 ******************************************************************************** 2024-05-22T09:47:59,446 !! 2024-05-22T09:47:59,448 check.warn(importable) 2024-05-22T09:47:59,448 /tmp/pip-build-env-tzvozd4z/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'funvip.external.mmseqs_Windows.examples' is absent from the `packages` configuration. 2024-05-22T09:47:59,449 !! 2024-05-22T09:47:59,450 ******************************************************************************** 2024-05-22T09:47:59,450 ############################ 2024-05-22T09:47:59,451 # Package would be ignored # 2024-05-22T09:47:59,451 ############################ 2024-05-22T09:47:59,451 Python recognizes 'funvip.external.mmseqs_Windows.examples' as an importable package[^1], 2024-05-22T09:47:59,452 but it is absent from setuptools' `packages` configuration. 2024-05-22T09:47:59,453 This leads to an ambiguous overall configuration. If you want to distribute this 2024-05-22T09:47:59,453 package, please make sure that 'funvip.external.mmseqs_Windows.examples' is explicitly added 2024-05-22T09:47:59,454 to the `packages` configuration field. 2024-05-22T09:47:59,455 Alternatively, you can also rely on setuptools' discovery methods 2024-05-22T09:47:59,455 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-05-22T09:47:59,456 instead of `find_packages(...)`/`find:`). 2024-05-22T09:47:59,456 You can read more about "package discovery" on setuptools documentation page: 2024-05-22T09:47:59,457 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-05-22T09:47:59,458 If you don't want 'funvip.external.mmseqs_Windows.examples' to be distributed and are 2024-05-22T09:47:59,458 already explicitly excluding 'funvip.external.mmseqs_Windows.examples' via 2024-05-22T09:47:59,459 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-05-22T09:47:59,459 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-05-22T09:47:59,460 combination with a more fine grained `package-data` configuration. 2024-05-22T09:47:59,461 You can read more about "package data files" on setuptools documentation page: 2024-05-22T09:47:59,462 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-05-22T09:47:59,463 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-05-22T09:47:59,464 even if it does not contain any `.py` files. 2024-05-22T09:47:59,465 On the other hand, currently there is no concept of package data 2024-05-22T09:47:59,465 directory, all directories are treated like packages. 2024-05-22T09:47:59,465 ******************************************************************************** 2024-05-22T09:47:59,467 !! 2024-05-22T09:47:59,467 check.warn(importable) 2024-05-22T09:47:59,467 /tmp/pip-build-env-tzvozd4z/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'funvip.external.mmseqs_Windows.matrices' is absent from the `packages` configuration. 2024-05-22T09:47:59,468 !! 2024-05-22T09:47:59,469 ******************************************************************************** 2024-05-22T09:47:59,469 ############################ 2024-05-22T09:47:59,470 # Package would be ignored # 2024-05-22T09:47:59,470 ############################ 2024-05-22T09:47:59,471 Python recognizes 'funvip.external.mmseqs_Windows.matrices' as an importable package[^1], 2024-05-22T09:47:59,471 but it is absent from setuptools' `packages` configuration. 2024-05-22T09:47:59,472 This leads to an ambiguous overall configuration. If you want to distribute this 2024-05-22T09:47:59,473 package, please make sure that 'funvip.external.mmseqs_Windows.matrices' is explicitly added 2024-05-22T09:47:59,473 to the `packages` configuration field. 2024-05-22T09:47:59,474 Alternatively, you can also rely on setuptools' discovery methods 2024-05-22T09:47:59,475 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-05-22T09:47:59,475 instead of `find_packages(...)`/`find:`). 2024-05-22T09:47:59,476 You can read more about "package discovery" on setuptools documentation page: 2024-05-22T09:47:59,477 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-05-22T09:47:59,478 If you don't want 'funvip.external.mmseqs_Windows.matrices' to be distributed and are 2024-05-22T09:47:59,479 already explicitly excluding 'funvip.external.mmseqs_Windows.matrices' via 2024-05-22T09:47:59,479 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-05-22T09:47:59,480 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-05-22T09:47:59,481 combination with a more fine grained `package-data` configuration. 2024-05-22T09:47:59,481 You can read more about "package data files" on setuptools documentation page: 2024-05-22T09:47:59,482 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-05-22T09:47:59,483 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-05-22T09:47:59,484 even if it does not contain any `.py` files. 2024-05-22T09:47:59,485 On the other hand, currently there is no concept of package data 2024-05-22T09:47:59,485 directory, all directories are treated like packages. 2024-05-22T09:47:59,485 ******************************************************************************** 2024-05-22T09:47:59,486 !! 2024-05-22T09:47:59,487 check.warn(importable) 2024-05-22T09:47:59,487 /tmp/pip-build-env-tzvozd4z/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'funvip.external.mmseqs_Windows.util' is absent from the `packages` configuration. 2024-05-22T09:47:59,487 !! 2024-05-22T09:47:59,488 ******************************************************************************** 2024-05-22T09:47:59,489 ############################ 2024-05-22T09:47:59,489 # Package would be ignored # 2024-05-22T09:47:59,490 ############################ 2024-05-22T09:47:59,490 Python recognizes 'funvip.external.mmseqs_Windows.util' as an importable package[^1], 2024-05-22T09:47:59,490 but it is absent from setuptools' `packages` configuration. 2024-05-22T09:47:59,492 This leads to an ambiguous overall configuration. If you want to distribute this 2024-05-22T09:47:59,492 package, please make sure that 'funvip.external.mmseqs_Windows.util' is explicitly added 2024-05-22T09:47:59,492 to the `packages` configuration field. 2024-05-22T09:47:59,493 Alternatively, you can also rely on setuptools' discovery methods 2024-05-22T09:47:59,494 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-05-22T09:47:59,494 instead of `find_packages(...)`/`find:`). 2024-05-22T09:47:59,495 You can read more about "package discovery" on setuptools documentation page: 2024-05-22T09:47:59,497 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-05-22T09:47:59,498 If you don't want 'funvip.external.mmseqs_Windows.util' to be distributed and are 2024-05-22T09:47:59,498 already explicitly excluding 'funvip.external.mmseqs_Windows.util' via 2024-05-22T09:47:59,499 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-05-22T09:47:59,499 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-05-22T09:47:59,500 combination with a more fine grained `package-data` configuration. 2024-05-22T09:47:59,501 You can read more about "package data files" on setuptools documentation page: 2024-05-22T09:47:59,502 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-05-22T09:47:59,503 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-05-22T09:47:59,504 even if it does not contain any `.py` files. 2024-05-22T09:47:59,504 On the other hand, currently there is no concept of package data 2024-05-22T09:47:59,505 directory, all directories are treated like packages. 2024-05-22T09:47:59,505 ******************************************************************************** 2024-05-22T09:47:59,506 !! 2024-05-22T09:47:59,507 check.warn(importable) 2024-05-22T09:47:59,507 /tmp/pip-build-env-tzvozd4z/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'funvip.src.__pycache__' is absent from the `packages` configuration. 2024-05-22T09:47:59,508 !! 2024-05-22T09:47:59,509 ******************************************************************************** 2024-05-22T09:47:59,509 ############################ 2024-05-22T09:47:59,510 # Package would be ignored # 2024-05-22T09:47:59,510 ############################ 2024-05-22T09:47:59,511 Python recognizes 'funvip.src.__pycache__' as an importable package[^1], 2024-05-22T09:47:59,511 but it is absent from setuptools' `packages` configuration. 2024-05-22T09:47:59,512 This leads to an ambiguous overall configuration. If you want to distribute this 2024-05-22T09:47:59,512 package, please make sure that 'funvip.src.__pycache__' is explicitly added 2024-05-22T09:47:59,513 to the `packages` configuration field. 2024-05-22T09:47:59,514 Alternatively, you can also rely on setuptools' discovery methods 2024-05-22T09:47:59,514 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-05-22T09:47:59,515 instead of `find_packages(...)`/`find:`). 2024-05-22T09:47:59,515 You can read more about "package discovery" on setuptools documentation page: 2024-05-22T09:47:59,516 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-05-22T09:47:59,517 If you don't want 'funvip.src.__pycache__' to be distributed and are 2024-05-22T09:47:59,518 already explicitly excluding 'funvip.src.__pycache__' via 2024-05-22T09:47:59,518 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-05-22T09:47:59,518 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-05-22T09:47:59,519 combination with a more fine grained `package-data` configuration. 2024-05-22T09:47:59,520 You can read more about "package data files" on setuptools documentation page: 2024-05-22T09:47:59,521 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-05-22T09:47:59,522 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-05-22T09:47:59,523 even if it does not contain any `.py` files. 2024-05-22T09:47:59,523 On the other hand, currently there is no concept of package data 2024-05-22T09:47:59,524 directory, all directories are treated like packages. 2024-05-22T09:47:59,525 ******************************************************************************** 2024-05-22T09:47:59,526 !! 2024-05-22T09:47:59,526 check.warn(importable) 2024-05-22T09:47:59,527 /tmp/pip-build-env-tzvozd4z/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'funvip.src.templates' is absent from the `packages` configuration. 2024-05-22T09:47:59,527 !! 2024-05-22T09:47:59,528 ******************************************************************************** 2024-05-22T09:47:59,529 ############################ 2024-05-22T09:47:59,529 # Package would be ignored # 2024-05-22T09:47:59,530 ############################ 2024-05-22T09:47:59,530 Python recognizes 'funvip.src.templates' as an importable package[^1], 2024-05-22T09:47:59,531 but it is absent from setuptools' `packages` configuration. 2024-05-22T09:47:59,532 This leads to an ambiguous overall configuration. If you want to distribute this 2024-05-22T09:47:59,532 package, please make sure that 'funvip.src.templates' is explicitly added 2024-05-22T09:47:59,533 to the `packages` configuration field. 2024-05-22T09:47:59,534 Alternatively, you can also rely on setuptools' discovery methods 2024-05-22T09:47:59,534 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-05-22T09:47:59,535 instead of `find_packages(...)`/`find:`). 2024-05-22T09:47:59,536 You can read more about "package discovery" on setuptools documentation page: 2024-05-22T09:47:59,538 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-05-22T09:47:59,538 If you don't want 'funvip.src.templates' to be distributed and are 2024-05-22T09:47:59,539 already explicitly excluding 'funvip.src.templates' via 2024-05-22T09:47:59,539 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-05-22T09:47:59,540 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-05-22T09:47:59,540 combination with a more fine grained `package-data` configuration. 2024-05-22T09:47:59,541 You can read more about "package data files" on setuptools documentation page: 2024-05-22T09:47:59,541 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-05-22T09:47:59,543 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-05-22T09:47:59,543 even if it does not contain any `.py` files. 2024-05-22T09:47:59,544 On the other hand, currently there is no concept of package data 2024-05-22T09:47:59,544 directory, all directories are treated like packages. 2024-05-22T09:47:59,545 ******************************************************************************** 2024-05-22T09:47:59,545 !! 2024-05-22T09:47:59,546 check.warn(importable) 2024-05-22T09:47:59,547 /tmp/pip-build-env-tzvozd4z/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'funvip.test_dataset.penicillium' is absent from the `packages` configuration. 2024-05-22T09:47:59,547 !! 2024-05-22T09:47:59,548 ******************************************************************************** 2024-05-22T09:47:59,548 ############################ 2024-05-22T09:47:59,549 # Package would be ignored # 2024-05-22T09:47:59,549 ############################ 2024-05-22T09:47:59,550 Python recognizes 'funvip.test_dataset.penicillium' as an importable package[^1], 2024-05-22T09:47:59,550 but it is absent from setuptools' `packages` configuration. 2024-05-22T09:47:59,551 This leads to an ambiguous overall configuration. If you want to distribute this 2024-05-22T09:47:59,552 package, please make sure that 'funvip.test_dataset.penicillium' is explicitly added 2024-05-22T09:47:59,552 to the `packages` configuration field. 2024-05-22T09:47:59,553 Alternatively, you can also rely on setuptools' discovery methods 2024-05-22T09:47:59,554 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-05-22T09:47:59,554 instead of `find_packages(...)`/`find:`). 2024-05-22T09:47:59,555 You can read more about "package discovery" on setuptools documentation page: 2024-05-22T09:47:59,556 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-05-22T09:47:59,557 If you don't want 'funvip.test_dataset.penicillium' to be distributed and are 2024-05-22T09:47:59,558 already explicitly excluding 'funvip.test_dataset.penicillium' via 2024-05-22T09:47:59,558 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-05-22T09:47:59,559 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-05-22T09:47:59,559 combination with a more fine grained `package-data` configuration. 2024-05-22T09:47:59,560 You can read more about "package data files" on setuptools documentation page: 2024-05-22T09:47:59,561 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-05-22T09:47:59,563 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-05-22T09:47:59,563 even if it does not contain any `.py` files. 2024-05-22T09:47:59,564 On the other hand, currently there is no concept of package data 2024-05-22T09:47:59,565 directory, all directories are treated like packages. 2024-05-22T09:47:59,566 ******************************************************************************** 2024-05-22T09:47:59,566 !! 2024-05-22T09:47:59,567 check.warn(importable) 2024-05-22T09:47:59,567 /tmp/pip-build-env-tzvozd4z/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'funvip.test_dataset.penicillium.DB' is absent from the `packages` configuration. 2024-05-22T09:47:59,568 !! 2024-05-22T09:47:59,569 ******************************************************************************** 2024-05-22T09:47:59,569 ############################ 2024-05-22T09:47:59,569 # Package would be ignored # 2024-05-22T09:47:59,570 ############################ 2024-05-22T09:47:59,570 Python recognizes 'funvip.test_dataset.penicillium.DB' as an importable package[^1], 2024-05-22T09:47:59,571 but it is absent from setuptools' `packages` configuration. 2024-05-22T09:47:59,572 This leads to an ambiguous overall configuration. If you want to distribute this 2024-05-22T09:47:59,572 package, please make sure that 'funvip.test_dataset.penicillium.DB' is explicitly added 2024-05-22T09:47:59,573 to the `packages` configuration field. 2024-05-22T09:47:59,574 Alternatively, you can also rely on setuptools' discovery methods 2024-05-22T09:47:59,574 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-05-22T09:47:59,575 instead of `find_packages(...)`/`find:`). 2024-05-22T09:47:59,576 You can read more about "package discovery" on setuptools documentation page: 2024-05-22T09:47:59,577 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-05-22T09:47:59,578 If you don't want 'funvip.test_dataset.penicillium.DB' to be distributed and are 2024-05-22T09:47:59,579 already explicitly excluding 'funvip.test_dataset.penicillium.DB' via 2024-05-22T09:47:59,579 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-05-22T09:47:59,580 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-05-22T09:47:59,580 combination with a more fine grained `package-data` configuration. 2024-05-22T09:47:59,582 You can read more about "package data files" on setuptools documentation page: 2024-05-22T09:47:59,583 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-05-22T09:47:59,585 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-05-22T09:47:59,594 even if it does not contain any `.py` files. 2024-05-22T09:47:59,595 On the other hand, currently there is no concept of package data 2024-05-22T09:47:59,595 directory, all directories are treated like packages. 2024-05-22T09:47:59,596 ******************************************************************************** 2024-05-22T09:47:59,597 !! 2024-05-22T09:47:59,598 check.warn(importable) 2024-05-22T09:47:59,598 /tmp/pip-build-env-tzvozd4z/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'funvip.test_dataset.penicillium.Query' is absent from the `packages` configuration. 2024-05-22T09:47:59,599 !! 2024-05-22T09:47:59,600 ******************************************************************************** 2024-05-22T09:47:59,600 ############################ 2024-05-22T09:47:59,601 # Package would be ignored # 2024-05-22T09:47:59,602 ############################ 2024-05-22T09:47:59,602 Python recognizes 'funvip.test_dataset.penicillium.Query' as an importable package[^1], 2024-05-22T09:47:59,603 but it is absent from setuptools' `packages` configuration. 2024-05-22T09:47:59,604 This leads to an ambiguous overall configuration. If you want to distribute this 2024-05-22T09:47:59,605 package, please make sure that 'funvip.test_dataset.penicillium.Query' is explicitly added 2024-05-22T09:47:59,606 to the `packages` configuration field. 2024-05-22T09:47:59,607 Alternatively, you can also rely on setuptools' discovery methods 2024-05-22T09:47:59,607 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-05-22T09:47:59,607 instead of `find_packages(...)`/`find:`). 2024-05-22T09:47:59,608 You can read more about "package discovery" on setuptools documentation page: 2024-05-22T09:47:59,609 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-05-22T09:47:59,610 If you don't want 'funvip.test_dataset.penicillium.Query' to be distributed and are 2024-05-22T09:47:59,611 already explicitly excluding 'funvip.test_dataset.penicillium.Query' via 2024-05-22T09:47:59,611 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-05-22T09:47:59,612 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-05-22T09:47:59,612 combination with a more fine grained `package-data` configuration. 2024-05-22T09:47:59,613 You can read more about "package data files" on setuptools documentation page: 2024-05-22T09:47:59,614 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-05-22T09:47:59,615 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-05-22T09:47:59,616 even if it does not contain any `.py` files. 2024-05-22T09:47:59,616 On the other hand, currently there is no concept of package data 2024-05-22T09:47:59,617 directory, all directories are treated like packages. 2024-05-22T09:47:59,618 ******************************************************************************** 2024-05-22T09:47:59,619 !! 2024-05-22T09:47:59,619 check.warn(importable) 2024-05-22T09:47:59,620 /tmp/pip-build-env-tzvozd4z/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'funvip.test_dataset.terrei' is absent from the `packages` configuration. 2024-05-22T09:47:59,620 !! 2024-05-22T09:47:59,622 ******************************************************************************** 2024-05-22T09:47:59,622 ############################ 2024-05-22T09:47:59,623 # Package would be ignored # 2024-05-22T09:47:59,624 ############################ 2024-05-22T09:47:59,624 Python recognizes 'funvip.test_dataset.terrei' as an importable package[^1], 2024-05-22T09:47:59,625 but it is absent from setuptools' `packages` configuration. 2024-05-22T09:47:59,626 This leads to an ambiguous overall configuration. If you want to distribute this 2024-05-22T09:47:59,627 package, please make sure that 'funvip.test_dataset.terrei' is explicitly added 2024-05-22T09:47:59,627 to the `packages` configuration field. 2024-05-22T09:47:59,628 Alternatively, you can also rely on setuptools' discovery methods 2024-05-22T09:47:59,629 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-05-22T09:47:59,630 instead of `find_packages(...)`/`find:`). 2024-05-22T09:47:59,631 You can read more about "package discovery" on setuptools documentation page: 2024-05-22T09:47:59,632 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-05-22T09:47:59,633 If you don't want 'funvip.test_dataset.terrei' to be distributed and are 2024-05-22T09:47:59,634 already explicitly excluding 'funvip.test_dataset.terrei' via 2024-05-22T09:47:59,634 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-05-22T09:47:59,635 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-05-22T09:47:59,636 combination with a more fine grained `package-data` configuration. 2024-05-22T09:47:59,637 You can read more about "package data files" on setuptools documentation page: 2024-05-22T09:47:59,638 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-05-22T09:47:59,639 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-05-22T09:47:59,640 even if it does not contain any `.py` files. 2024-05-22T09:47:59,640 On the other hand, currently there is no concept of package data 2024-05-22T09:47:59,641 directory, all directories are treated like packages. 2024-05-22T09:47:59,641 ******************************************************************************** 2024-05-22T09:47:59,642 !! 2024-05-22T09:47:59,643 check.warn(importable) 2024-05-22T09:47:59,643 /tmp/pip-build-env-tzvozd4z/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'funvip.test_dataset.terrei.DB' is absent from the `packages` configuration. 2024-05-22T09:47:59,643 !! 2024-05-22T09:47:59,644 ******************************************************************************** 2024-05-22T09:47:59,645 ############################ 2024-05-22T09:47:59,645 # Package would be ignored # 2024-05-22T09:47:59,646 ############################ 2024-05-22T09:47:59,646 Python recognizes 'funvip.test_dataset.terrei.DB' as an importable package[^1], 2024-05-22T09:47:59,647 but it is absent from setuptools' `packages` configuration. 2024-05-22T09:47:59,648 This leads to an ambiguous overall configuration. If you want to distribute this 2024-05-22T09:47:59,648 package, please make sure that 'funvip.test_dataset.terrei.DB' is explicitly added 2024-05-22T09:47:59,649 to the `packages` configuration field. 2024-05-22T09:47:59,650 Alternatively, you can also rely on setuptools' discovery methods 2024-05-22T09:47:59,651 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-05-22T09:47:59,652 instead of `find_packages(...)`/`find:`). 2024-05-22T09:47:59,653 You can read more about "package discovery" on setuptools documentation page: 2024-05-22T09:47:59,654 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-05-22T09:47:59,669 If you don't want 'funvip.test_dataset.terrei.DB' to be distributed and are 2024-05-22T09:47:59,677 already explicitly excluding 'funvip.test_dataset.terrei.DB' via 2024-05-22T09:47:59,692 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-05-22T09:47:59,723 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-05-22T09:47:59,753 combination with a more fine grained `package-data` configuration. 2024-05-22T09:47:59,815 You can read more about "package data files" on setuptools documentation page: 2024-05-22T09:47:59,875 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-05-22T09:47:59,885 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-05-22T09:47:59,886 even if it does not contain any `.py` files. 2024-05-22T09:47:59,886 On the other hand, currently there is no concept of package data 2024-05-22T09:47:59,887 directory, all directories are treated like packages. 2024-05-22T09:47:59,887 ******************************************************************************** 2024-05-22T09:47:59,888 !! 2024-05-22T09:47:59,889 check.warn(importable) 2024-05-22T09:47:59,889 /tmp/pip-build-env-tzvozd4z/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'funvip.test_dataset.terrei.Query' is absent from the `packages` configuration. 2024-05-22T09:47:59,890 !! 2024-05-22T09:47:59,891 ******************************************************************************** 2024-05-22T09:47:59,892 ############################ 2024-05-22T09:47:59,892 # Package would be ignored # 2024-05-22T09:47:59,893 ############################ 2024-05-22T09:47:59,893 Python recognizes 'funvip.test_dataset.terrei.Query' as an importable package[^1], 2024-05-22T09:47:59,893 but it is absent from setuptools' `packages` configuration. 2024-05-22T09:47:59,894 This leads to an ambiguous overall configuration. If you want to distribute this 2024-05-22T09:47:59,895 package, please make sure that 'funvip.test_dataset.terrei.Query' is explicitly added 2024-05-22T09:47:59,895 to the `packages` configuration field. 2024-05-22T09:47:59,897 Alternatively, you can also rely on setuptools' discovery methods 2024-05-22T09:47:59,897 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-05-22T09:47:59,898 instead of `find_packages(...)`/`find:`). 2024-05-22T09:47:59,899 You can read more about "package discovery" on setuptools documentation page: 2024-05-22T09:47:59,904 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-05-22T09:47:59,905 If you don't want 'funvip.test_dataset.terrei.Query' to be distributed and are 2024-05-22T09:47:59,906 already explicitly excluding 'funvip.test_dataset.terrei.Query' via 2024-05-22T09:47:59,906 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-05-22T09:47:59,907 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-05-22T09:47:59,907 combination with a more fine grained `package-data` configuration. 2024-05-22T09:47:59,908 You can read more about "package data files" on setuptools documentation page: 2024-05-22T09:47:59,909 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-05-22T09:47:59,911 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-05-22T09:47:59,911 even if it does not contain any `.py` files. 2024-05-22T09:47:59,912 On the other hand, currently there is no concept of package data 2024-05-22T09:47:59,912 directory, all directories are treated like packages. 2024-05-22T09:47:59,913 ******************************************************************************** 2024-05-22T09:47:59,914 !! 2024-05-22T09:47:59,914 check.warn(importable) 2024-05-22T09:47:59,915 copying funvip/data/genus_line.txt -> build/lib/funvip/data 2024-05-22T09:47:59,915 copying funvip/data/Option_manager.xlsx -> build/lib/funvip/data 2024-05-22T09:47:59,916 copying funvip/external/MAFFT_Windows.zip -> build/lib/funvip/external 2024-05-22T09:47:59,916 copying funvip/external/MAFFT_LICENSE -> build/lib/funvip/external 2024-05-22T09:47:59,917 creating build/lib/funvip/preset 2024-05-22T09:47:59,918 copying funvip/preset/accurate.yaml -> build/lib/funvip/preset 2024-05-22T09:47:59,918 copying funvip/preset/fast.yaml -> build/lib/funvip/preset 2024-05-22T09:47:59,919 copying funvip/preset/.gitignore -> build/lib/funvip/preset 2024-05-22T09:47:59,919 copying funvip/src/.gitignore -> build/lib/funvip/src 2024-05-22T09:47:59,920 creating build/lib/funvip/src/__pycache__ 2024-05-22T09:47:59,920 copying funvip/src/__pycache__/CATV_pipe.cpython-310.pyc -> build/lib/funvip/src/__pycache__ 2024-05-22T09:47:59,921 copying funvip/src/__pycache__/CAT_V.cpython-310.pyc -> build/lib/funvip/src/__pycache__ 2024-05-22T09:47:59,922 copying funvip/src/__pycache__/CAT_V.cpython-39.pyc -> build/lib/funvip/src/__pycache__ 2024-05-22T09:47:59,922 copying funvip/src/__pycache__/CAT_V_pipe.cpython-39.pyc -> build/lib/funvip/src/__pycache__ 2024-05-22T09:47:59,923 copying funvip/src/__pycache__/__init__.cpython-310.pyc -> build/lib/funvip/src/__pycache__ 2024-05-22T09:47:59,924 copying funvip/src/__pycache__/__init__.cpython-39.pyc -> build/lib/funvip/src/__pycache__ 2024-05-22T09:47:59,925 copying funvip/src/__pycache__/align.cpython-310.pyc -> build/lib/funvip/src/__pycache__ 2024-05-22T09:47:59,925 copying funvip/src/__pycache__/cluster.cpython-39.pyc -> build/lib/funvip/src/__pycache__ 2024-05-22T09:47:59,926 copying funvip/src/__pycache__/dataset.cpython-39.pyc -> build/lib/funvip/src/__pycache__ 2024-05-22T09:47:59,926 copying funvip/src/__pycache__/ext.cpython-310.pyc -> build/lib/funvip/src/__pycache__ 2024-05-22T09:47:59,926 copying funvip/src/__pycache__/ext.cpython-39.pyc -> build/lib/funvip/src/__pycache__ 2024-05-22T09:47:59,927 copying funvip/src/__pycache__/hasher.cpython-39.pyc -> build/lib/funvip/src/__pycache__ 2024-05-22T09:47:59,927 copying funvip/src/__pycache__/initialize.cpython-39.pyc -> build/lib/funvip/src/__pycache__ 2024-05-22T09:47:59,928 copying funvip/src/__pycache__/io.cpython-310.pyc -> build/lib/funvip/src/__pycache__ 2024-05-22T09:47:59,928 copying funvip/src/__pycache__/io.cpython-39.pyc -> build/lib/funvip/src/__pycache__ 2024-05-22T09:47:59,929 copying funvip/src/__pycache__/logger.cpython-39.pyc -> build/lib/funvip/src/__pycache__ 2024-05-22T09:47:59,929 copying funvip/src/__pycache__/modeltest.cpython-39.pyc -> build/lib/funvip/src/__pycache__ 2024-05-22T09:47:59,930 copying funvip/src/__pycache__/multigene.cpython-39.pyc -> build/lib/funvip/src/__pycache__ 2024-05-22T09:47:59,930 copying funvip/src/__pycache__/ncbi.cpython-39.pyc -> build/lib/funvip/src/__pycache__ 2024-05-22T09:47:59,931 copying funvip/src/__pycache__/opt_generator.cpython-39.pyc -> build/lib/funvip/src/__pycache__ 2024-05-22T09:47:59,931 copying funvip/src/__pycache__/reporter.cpython-39.pyc -> build/lib/funvip/src/__pycache__ 2024-05-22T09:47:59,935 copying funvip/src/__pycache__/search.cpython-39.pyc -> build/lib/funvip/src/__pycache__ 2024-05-22T09:47:59,936 copying funvip/src/__pycache__/tool.cpython-39.pyc -> build/lib/funvip/src/__pycache__ 2024-05-22T09:47:59,936 copying funvip/src/__pycache__/validation.cpython-39.pyc -> build/lib/funvip/src/__pycache__ 2024-05-22T09:47:59,937 copying funvip/src/__pycache__/visualize.cpython-39.pyc -> build/lib/funvip/src/__pycache__ 2024-05-22T09:47:59,938 creating build/lib/funvip/src/templates 2024-05-22T09:47:59,938 copying funvip/src/templates/template.html -> build/lib/funvip/src/templates 2024-05-22T09:47:59,939 creating build/lib/funvip/external/BLAST_Windows 2024-05-22T09:47:59,940 copying funvip/external/BLAST_Windows/Uninstall-ncbi-blast-2.12.0+.exe -> build/lib/funvip/external/BLAST_Windows 2024-05-22T09:47:59,940 creating build/lib/funvip/external/BLAST_Windows/bin 2024-05-22T09:47:59,941 copying funvip/external/BLAST_Windows/bin/blastn.exe -> build/lib/funvip/external/BLAST_Windows/bin 2024-05-22T09:47:59,942 copying funvip/external/BLAST_Windows/bin/cleanup-blastdb-volumes.py -> build/lib/funvip/external/BLAST_Windows/bin 2024-05-22T09:47:59,942 copying funvip/external/BLAST_Windows/bin/get_species_taxids.sh -> build/lib/funvip/external/BLAST_Windows/bin 2024-05-22T09:47:59,943 copying funvip/external/BLAST_Windows/bin/legacy_blast.pl -> build/lib/funvip/external/BLAST_Windows/bin 2024-05-22T09:47:59,943 copying funvip/external/BLAST_Windows/bin/makeblastdb.exe -> build/lib/funvip/external/BLAST_Windows/bin 2024-05-22T09:48:00,143 copying funvip/external/BLAST_Windows/bin/nghttp2.dll -> build/lib/funvip/external/BLAST_Windows/bin 2024-05-22T09:48:00,148 copying funvip/external/BLAST_Windows/bin/update_blastdb.pl -> build/lib/funvip/external/BLAST_Windows/bin 2024-05-22T09:48:00,150 creating build/lib/funvip/external/BLAST_Windows/doc 2024-05-22T09:48:00,151 copying funvip/external/BLAST_Windows/doc/README.txt -> build/lib/funvip/external/BLAST_Windows/doc 2024-05-22T09:48:00,154 creating build/lib/funvip/external/FastTree_Windows 2024-05-22T09:48:00,155 copying funvip/external/FastTree_Windows/FastTree.exe -> build/lib/funvip/external/FastTree_Windows 2024-05-22T09:48:00,162 creating build/lib/funvip/external/Gblocks_Windows_0.91b 2024-05-22T09:48:00,163 creating build/lib/funvip/external/Gblocks_Windows_0.91b/Gblocks_0.91b 2024-05-22T09:48:00,164 copying funvip/external/Gblocks_Windows_0.91b/Gblocks_0.91b/Gblocks.exe -> build/lib/funvip/external/Gblocks_Windows_0.91b/Gblocks_0.91b 2024-05-22T09:48:00,170 copying funvip/external/Gblocks_Windows_0.91b/Gblocks_0.91b/nad3.pir -> build/lib/funvip/external/Gblocks_Windows_0.91b/Gblocks_0.91b 2024-05-22T09:48:00,173 copying funvip/external/Gblocks_Windows_0.91b/Gblocks_0.91b/paths -> build/lib/funvip/external/Gblocks_Windows_0.91b/Gblocks_0.91b 2024-05-22T09:48:00,175 creating build/lib/funvip/external/Gblocks_Windows_0.91b/Gblocks_0.91b/Documentation 2024-05-22T09:48:00,175 copying funvip/external/Gblocks_Windows_0.91b/Gblocks_0.91b/Documentation/Gblocks_documentation.html -> build/lib/funvip/external/Gblocks_Windows_0.91b/Gblocks_0.91b/Documentation 2024-05-22T09:48:00,179 creating build/lib/funvip/external/Gblocks_Windows_0.91b/Gblocks_0.91b/more_alignments 2024-05-22T09:48:00,180 copying funvip/external/Gblocks_Windows_0.91b/Gblocks_0.91b/more_alignments/cox2.pir -> build/lib/funvip/external/Gblocks_Windows_0.91b/Gblocks_0.91b/more_alignments 2024-05-22T09:48:00,182 copying funvip/external/Gblocks_Windows_0.91b/Gblocks_0.91b/more_alignments/cytb.pir -> build/lib/funvip/external/Gblocks_Windows_0.91b/Gblocks_0.91b/more_alignments 2024-05-22T09:48:00,185 copying funvip/external/Gblocks_Windows_0.91b/Gblocks_0.91b/more_alignments/nad3.pir -> build/lib/funvip/external/Gblocks_Windows_0.91b/Gblocks_0.91b/more_alignments 2024-05-22T09:48:00,187 copying funvip/external/Gblocks_Windows_0.91b/Gblocks_0.91b/more_alignments/nad5.pir -> build/lib/funvip/external/Gblocks_Windows_0.91b/Gblocks_0.91b/more_alignments 2024-05-22T09:48:00,190 creating build/lib/funvip/external/RAxML_Windows 2024-05-22T09:48:00,190 copying funvip/external/RAxML_Windows/GPL-3.0.txt -> build/lib/funvip/external/RAxML_Windows 2024-05-22T09:48:00,194 copying funvip/external/RAxML_Windows/README -> build/lib/funvip/external/RAxML_Windows 2024-05-22T09:48:00,195 copying funvip/external/RAxML_Windows/raxmlHPC-PTHREADS-AVX2.exe -> build/lib/funvip/external/RAxML_Windows 2024-05-22T09:48:00,222 creating build/lib/funvip/external/iqtree 2024-05-22T09:48:00,223 copying funvip/external/iqtree/example.cf -> build/lib/funvip/external/iqtree 2024-05-22T09:48:00,258 copying funvip/external/iqtree/example.nex -> build/lib/funvip/external/iqtree 2024-05-22T09:48:00,261 copying funvip/external/iqtree/example.phy -> build/lib/funvip/external/iqtree 2024-05-22T09:48:00,263 copying funvip/external/iqtree/models.nex -> build/lib/funvip/external/iqtree 2024-05-22T09:48:00,267 creating build/lib/funvip/external/iqtree/bin 2024-05-22T09:48:00,269 copying funvip/external/iqtree/bin/iqtree2-click.exe -> build/lib/funvip/external/iqtree/bin 2024-05-22T09:48:00,453 copying funvip/external/iqtree/bin/iqtree2.exe -> build/lib/funvip/external/iqtree/bin 2024-05-22T09:48:00,635 copying funvip/external/iqtree/bin/libiomp5md.dll -> build/lib/funvip/external/iqtree/bin 2024-05-22T09:48:00,698 creating build/lib/funvip/external/mmseqs_Windows 2024-05-22T09:48:00,699 copying funvip/external/mmseqs_Windows/LICENSE.md -> build/lib/funvip/external/mmseqs_Windows 2024-05-22T09:48:00,701 copying funvip/external/mmseqs_Windows/README.md -> build/lib/funvip/external/mmseqs_Windows 2024-05-22T09:48:00,704 copying funvip/external/mmseqs_Windows/mmseqs.bat -> build/lib/funvip/external/mmseqs_Windows 2024-05-22T09:48:00,706 creating build/lib/funvip/external/mmseqs_Windows/bin 2024-05-22T09:48:00,707 copying funvip/external/mmseqs_Windows/bin/busybox.exe -> build/lib/funvip/external/mmseqs_Windows/bin 2024-05-22T09:48:00,719 copying funvip/external/mmseqs_Windows/bin/cygbz2-1.dll -> build/lib/funvip/external/mmseqs_Windows/bin 2024-05-22T09:48:00,722 copying funvip/external/mmseqs_Windows/bin/cyggcc_s-seh-1.dll -> build/lib/funvip/external/mmseqs_Windows/bin 2024-05-22T09:48:00,726 copying funvip/external/mmseqs_Windows/bin/cyggomp-1.dll -> build/lib/funvip/external/mmseqs_Windows/bin 2024-05-22T09:48:00,732 copying funvip/external/mmseqs_Windows/bin/cygstdc++-6.dll -> build/lib/funvip/external/mmseqs_Windows/bin 2024-05-22T09:48:00,762 copying funvip/external/mmseqs_Windows/bin/cygwin1.dll -> build/lib/funvip/external/mmseqs_Windows/bin 2024-05-22T09:48:00,820 copying funvip/external/mmseqs_Windows/bin/cygz.dll -> build/lib/funvip/external/mmseqs_Windows/bin 2024-05-22T09:48:00,823 copying funvip/external/mmseqs_Windows/bin/mmseqs.exe -> build/lib/funvip/external/mmseqs_Windows/bin 2024-05-22T09:48:01,004 creating build/lib/funvip/external/mmseqs_Windows/examples 2024-05-22T09:48:01,005 copying funvip/external/mmseqs_Windows/examples/QUERY.fasta -> build/lib/funvip/external/mmseqs_Windows/examples 2024-05-22T09:48:01,012 creating build/lib/funvip/external/mmseqs_Windows/matrices 2024-05-22T09:48:01,013 copying funvip/external/mmseqs_Windows/matrices/PAM10.out -> build/lib/funvip/external/mmseqs_Windows/matrices 2024-05-22T09:48:01,015 copying funvip/external/mmseqs_Windows/matrices/PAM100.out -> build/lib/funvip/external/mmseqs_Windows/matrices 2024-05-22T09:48:01,017 copying funvip/external/mmseqs_Windows/matrices/PAM110.out -> build/lib/funvip/external/mmseqs_Windows/matrices 2024-05-22T09:48:01,019 copying funvip/external/mmseqs_Windows/matrices/PAM120.out -> build/lib/funvip/external/mmseqs_Windows/matrices 2024-05-22T09:48:01,021 copying funvip/external/mmseqs_Windows/matrices/PAM130.out -> build/lib/funvip/external/mmseqs_Windows/matrices 2024-05-22T09:48:01,022 copying funvip/external/mmseqs_Windows/matrices/PAM140.out -> build/lib/funvip/external/mmseqs_Windows/matrices 2024-05-22T09:48:01,024 copying funvip/external/mmseqs_Windows/matrices/PAM150.out -> build/lib/funvip/external/mmseqs_Windows/matrices 2024-05-22T09:48:01,026 copying funvip/external/mmseqs_Windows/matrices/PAM160.out -> build/lib/funvip/external/mmseqs_Windows/matrices 2024-05-22T09:48:01,029 copying funvip/external/mmseqs_Windows/matrices/PAM170.out -> build/lib/funvip/external/mmseqs_Windows/matrices 2024-05-22T09:48:01,030 copying funvip/external/mmseqs_Windows/matrices/PAM180.out -> build/lib/funvip/external/mmseqs_Windows/matrices 2024-05-22T09:48:01,033 copying funvip/external/mmseqs_Windows/matrices/PAM190.out -> build/lib/funvip/external/mmseqs_Windows/matrices 2024-05-22T09:48:01,035 copying funvip/external/mmseqs_Windows/matrices/PAM20.out -> build/lib/funvip/external/mmseqs_Windows/matrices 2024-05-22T09:48:01,037 copying funvip/external/mmseqs_Windows/matrices/PAM30.out -> build/lib/funvip/external/mmseqs_Windows/matrices 2024-05-22T09:48:01,039 copying funvip/external/mmseqs_Windows/matrices/PAM40.out -> build/lib/funvip/external/mmseqs_Windows/matrices 2024-05-22T09:48:01,041 copying funvip/external/mmseqs_Windows/matrices/PAM50.out -> build/lib/funvip/external/mmseqs_Windows/matrices 2024-05-22T09:48:01,043 copying funvip/external/mmseqs_Windows/matrices/PAM60.out -> build/lib/funvip/external/mmseqs_Windows/matrices 2024-05-22T09:48:01,045 copying funvip/external/mmseqs_Windows/matrices/PAM70.out -> build/lib/funvip/external/mmseqs_Windows/matrices 2024-05-22T09:48:01,047 copying funvip/external/mmseqs_Windows/matrices/PAM80.out -> build/lib/funvip/external/mmseqs_Windows/matrices 2024-05-22T09:48:01,049 copying funvip/external/mmseqs_Windows/matrices/PAM90.out -> build/lib/funvip/external/mmseqs_Windows/matrices 2024-05-22T09:48:01,051 copying funvip/external/mmseqs_Windows/matrices/VTML10.out -> build/lib/funvip/external/mmseqs_Windows/matrices 2024-05-22T09:48:01,053 copying funvip/external/mmseqs_Windows/matrices/VTML120.out -> build/lib/funvip/external/mmseqs_Windows/matrices 2024-05-22T09:48:01,056 copying funvip/external/mmseqs_Windows/matrices/VTML160.out -> build/lib/funvip/external/mmseqs_Windows/matrices 2024-05-22T09:48:01,058 copying funvip/external/mmseqs_Windows/matrices/VTML20.out -> build/lib/funvip/external/mmseqs_Windows/matrices 2024-05-22T09:48:01,060 copying funvip/external/mmseqs_Windows/matrices/VTML40.out -> build/lib/funvip/external/mmseqs_Windows/matrices 2024-05-22T09:48:01,062 copying funvip/external/mmseqs_Windows/matrices/VTML80.out -> build/lib/funvip/external/mmseqs_Windows/matrices 2024-05-22T09:48:01,064 copying funvip/external/mmseqs_Windows/matrices/blosum100.out -> build/lib/funvip/external/mmseqs_Windows/matrices 2024-05-22T09:48:01,066 copying funvip/external/mmseqs_Windows/matrices/blosum30.out -> build/lib/funvip/external/mmseqs_Windows/matrices 2024-05-22T09:48:01,068 copying funvip/external/mmseqs_Windows/matrices/blosum35.out -> build/lib/funvip/external/mmseqs_Windows/matrices 2024-05-22T09:48:01,070 copying funvip/external/mmseqs_Windows/matrices/blosum40.out -> build/lib/funvip/external/mmseqs_Windows/matrices 2024-05-22T09:48:01,072 copying funvip/external/mmseqs_Windows/matrices/blosum45.out -> build/lib/funvip/external/mmseqs_Windows/matrices 2024-05-22T09:48:01,074 copying funvip/external/mmseqs_Windows/matrices/blosum50.out -> build/lib/funvip/external/mmseqs_Windows/matrices 2024-05-22T09:48:01,076 copying funvip/external/mmseqs_Windows/matrices/blosum55.out -> build/lib/funvip/external/mmseqs_Windows/matrices 2024-05-22T09:48:01,078 copying funvip/external/mmseqs_Windows/matrices/blosum60.out -> build/lib/funvip/external/mmseqs_Windows/matrices 2024-05-22T09:48:01,080 copying funvip/external/mmseqs_Windows/matrices/blosum62.out -> build/lib/funvip/external/mmseqs_Windows/matrices 2024-05-22T09:48:01,082 copying funvip/external/mmseqs_Windows/matrices/blosum65.out -> build/lib/funvip/external/mmseqs_Windows/matrices 2024-05-22T09:48:01,085 copying funvip/external/mmseqs_Windows/matrices/blosum70.out -> build/lib/funvip/external/mmseqs_Windows/matrices 2024-05-22T09:48:01,087 copying funvip/external/mmseqs_Windows/matrices/blosum75.out -> build/lib/funvip/external/mmseqs_Windows/matrices 2024-05-22T09:48:01,089 copying funvip/external/mmseqs_Windows/matrices/blosum80.out -> build/lib/funvip/external/mmseqs_Windows/matrices 2024-05-22T09:48:01,091 copying funvip/external/mmseqs_Windows/matrices/blosum85.out -> build/lib/funvip/external/mmseqs_Windows/matrices 2024-05-22T09:48:01,093 copying funvip/external/mmseqs_Windows/matrices/blosum90.out -> build/lib/funvip/external/mmseqs_Windows/matrices 2024-05-22T09:48:01,095 copying funvip/external/mmseqs_Windows/matrices/blosum95.out -> build/lib/funvip/external/mmseqs_Windows/matrices 2024-05-22T09:48:01,097 copying funvip/external/mmseqs_Windows/matrices/nucleotide.out -> build/lib/funvip/external/mmseqs_Windows/matrices 2024-05-22T09:48:01,099 creating build/lib/funvip/external/mmseqs_Windows/util 2024-05-22T09:48:01,100 copying funvip/external/mmseqs_Windows/util/bash-completion.sh -> build/lib/funvip/external/mmseqs_Windows/util 2024-05-22T09:48:01,102 creating build/lib/funvip/external/trimal.v1.4 2024-05-22T09:48:01,103 creating build/lib/funvip/external/trimal.v1.4/trimAl 2024-05-22T09:48:01,104 copying funvip/external/trimal.v1.4/trimAl/AUTHORS -> build/lib/funvip/external/trimal.v1.4/trimAl 2024-05-22T09:48:01,106 copying funvip/external/trimal.v1.4/trimAl/CHANGELOG -> build/lib/funvip/external/trimal.v1.4/trimAl 2024-05-22T09:48:01,109 copying funvip/external/trimal.v1.4/trimAl/LICENSE -> build/lib/funvip/external/trimal.v1.4/trimAl 2024-05-22T09:48:01,112 copying funvip/external/trimal.v1.4/trimAl/README -> build/lib/funvip/external/trimal.v1.4/trimAl 2024-05-22T09:48:01,113 creating build/lib/funvip/external/trimal.v1.4/trimAl/bin 2024-05-22T09:48:01,114 copying funvip/external/trimal.v1.4/trimAl/bin/libgcc_s_dw2-1.dll -> build/lib/funvip/external/trimal.v1.4/trimAl/bin 2024-05-22T09:48:01,131 copying funvip/external/trimal.v1.4/trimAl/bin/libstdc++-6.dll -> build/lib/funvip/external/trimal.v1.4/trimAl/bin 2024-05-22T09:48:01,155 copying funvip/external/trimal.v1.4/trimAl/bin/trimal.exe -> build/lib/funvip/external/trimal.v1.4/trimAl/bin 2024-05-22T09:48:01,165 creating build/lib/funvip/external/trimal.v1.4/trimAl/scripts 2024-05-22T09:48:01,166 copying funvip/external/trimal.v1.4/trimAl/scripts/check_codon_alignments.py -> build/lib/funvip/external/trimal.v1.4/trimAl/scripts 2024-05-22T09:48:01,169 copying funvip/external/trimal.v1.4/trimAl/scripts/compare_trimmed_msas.sh -> build/lib/funvip/external/trimal.v1.4/trimAl/scripts 2024-05-22T09:48:01,171 copying funvip/external/trimal.v1.4/trimAl/scripts/generateRandomAlignmentsUsingAsSeedRealAlignments.py -> build/lib/funvip/external/trimal.v1.4/trimAl/scripts 2024-05-22T09:48:01,174 copying funvip/external/trimal.v1.4/trimAl/scripts/generate_trimmed_msas.sh -> build/lib/funvip/external/trimal.v1.4/trimAl/scripts 2024-05-22T09:48:01,177 copying funvip/external/trimal.v1.4/trimAl/scripts/get_sequence_representative_from_alignment.py -> build/lib/funvip/external/trimal.v1.4/trimAl/scripts 2024-05-22T09:48:01,180 copying funvip/external/trimal.v1.4/trimAl/scripts/get_sequences_gaps_ratio.py -> build/lib/funvip/external/trimal.v1.4/trimAl/scripts 2024-05-22T09:48:01,182 copying funvip/external/trimal.v1.4/trimAl/scripts/remove_shorter_sequences.py -> build/lib/funvip/external/trimal.v1.4/trimAl/scripts 2024-05-22T09:48:01,184 copying funvip/external/trimal.v1.4/trimAl/scripts/selective_trimming_for_dNdS_analyses.based_neighbours.py -> build/lib/funvip/external/trimal.v1.4/trimAl/scripts 2024-05-22T09:48:01,186 copying funvip/external/trimal.v1.4/trimAl/scripts/set_manual_boundaries.py -> build/lib/funvip/external/trimal.v1.4/trimAl/scripts 2024-05-22T09:48:01,188 creating build/lib/funvip/external/trimal.v1.4/trimAl/source 2024-05-22T09:48:01,189 copying funvip/external/trimal.v1.4/trimAl/source/alignment.cpp -> build/lib/funvip/external/trimal.v1.4/trimAl/source 2024-05-22T09:48:01,194 copying funvip/external/trimal.v1.4/trimAl/source/alignment.h -> build/lib/funvip/external/trimal.v1.4/trimAl/source 2024-05-22T09:48:01,197 copying funvip/external/trimal.v1.4/trimAl/source/alignment.o -> build/lib/funvip/external/trimal.v1.4/trimAl/source 2024-05-22T09:48:01,201 copying funvip/external/trimal.v1.4/trimAl/source/autAlignment.cpp -> build/lib/funvip/external/trimal.v1.4/trimAl/source 2024-05-22T09:48:01,204 copying funvip/external/trimal.v1.4/trimAl/source/autAlignment.o -> build/lib/funvip/external/trimal.v1.4/trimAl/source 2024-05-22T09:48:01,207 copying funvip/external/trimal.v1.4/trimAl/source/compareFiles.cpp -> build/lib/funvip/external/trimal.v1.4/trimAl/source 2024-05-22T09:48:01,209 copying funvip/external/trimal.v1.4/trimAl/source/compareFiles.h -> build/lib/funvip/external/trimal.v1.4/trimAl/source 2024-05-22T09:48:01,212 copying funvip/external/trimal.v1.4/trimAl/source/compareFiles.o -> build/lib/funvip/external/trimal.v1.4/trimAl/source 2024-05-22T09:48:01,215 copying funvip/external/trimal.v1.4/trimAl/source/defines.h -> build/lib/funvip/external/trimal.v1.4/trimAl/source 2024-05-22T09:48:01,217 copying funvip/external/trimal.v1.4/trimAl/source/main.cpp -> build/lib/funvip/external/trimal.v1.4/trimAl/source 2024-05-22T09:48:01,221 copying funvip/external/trimal.v1.4/trimAl/source/makefile -> build/lib/funvip/external/trimal.v1.4/trimAl/source 2024-05-22T09:48:01,223 copying funvip/external/trimal.v1.4/trimAl/source/makefile.MacOS -> build/lib/funvip/external/trimal.v1.4/trimAl/source 2024-05-22T09:48:01,226 copying funvip/external/trimal.v1.4/trimAl/source/readAl.cpp -> build/lib/funvip/external/trimal.v1.4/trimAl/source 2024-05-22T09:48:01,228 copying funvip/external/trimal.v1.4/trimAl/source/readal.exe -> build/lib/funvip/external/trimal.v1.4/trimAl/source 2024-05-22T09:48:01,236 copying funvip/external/trimal.v1.4/trimAl/source/rwAlignment.cpp -> build/lib/funvip/external/trimal.v1.4/trimAl/source 2024-05-22T09:48:01,240 copying funvip/external/trimal.v1.4/trimAl/source/rwAlignment.o -> build/lib/funvip/external/trimal.v1.4/trimAl/source 2024-05-22T09:48:01,245 copying funvip/external/trimal.v1.4/trimAl/source/sequencesMatrix.cpp -> build/lib/funvip/external/trimal.v1.4/trimAl/source 2024-05-22T09:48:01,248 copying funvip/external/trimal.v1.4/trimAl/source/sequencesMatrix.h -> build/lib/funvip/external/trimal.v1.4/trimAl/source 2024-05-22T09:48:01,250 copying funvip/external/trimal.v1.4/trimAl/source/sequencesMatrix.o -> build/lib/funvip/external/trimal.v1.4/trimAl/source 2024-05-22T09:48:01,254 copying funvip/external/trimal.v1.4/trimAl/source/similarityMatrix.cpp -> build/lib/funvip/external/trimal.v1.4/trimAl/source 2024-05-22T09:48:01,257 copying funvip/external/trimal.v1.4/trimAl/source/similarityMatrix.h -> build/lib/funvip/external/trimal.v1.4/trimAl/source 2024-05-22T09:48:01,259 copying funvip/external/trimal.v1.4/trimAl/source/similarityMatrix.o -> build/lib/funvip/external/trimal.v1.4/trimAl/source 2024-05-22T09:48:01,262 copying funvip/external/trimal.v1.4/trimAl/source/statAl.cpp -> build/lib/funvip/external/trimal.v1.4/trimAl/source 2024-05-22T09:48:01,265 copying funvip/external/trimal.v1.4/trimAl/source/statal.exe -> build/lib/funvip/external/trimal.v1.4/trimAl/source 2024-05-22T09:48:01,275 copying funvip/external/trimal.v1.4/trimAl/source/statisticsConservation.cpp -> build/lib/funvip/external/trimal.v1.4/trimAl/source 2024-05-22T09:48:01,279 copying funvip/external/trimal.v1.4/trimAl/source/statisticsConservation.h -> build/lib/funvip/external/trimal.v1.4/trimAl/source 2024-05-22T09:48:01,281 copying funvip/external/trimal.v1.4/trimAl/source/statisticsConservation.o -> build/lib/funvip/external/trimal.v1.4/trimAl/source 2024-05-22T09:48:01,283 copying funvip/external/trimal.v1.4/trimAl/source/statisticsFiles.cpp -> build/lib/funvip/external/trimal.v1.4/trimAl/source 2024-05-22T09:48:01,286 copying funvip/external/trimal.v1.4/trimAl/source/statisticsFiles.h -> build/lib/funvip/external/trimal.v1.4/trimAl/source 2024-05-22T09:48:01,288 copying funvip/external/trimal.v1.4/trimAl/source/statisticsGaps.cpp -> build/lib/funvip/external/trimal.v1.4/trimAl/source 2024-05-22T09:48:01,291 copying funvip/external/trimal.v1.4/trimAl/source/statisticsGaps.h -> build/lib/funvip/external/trimal.v1.4/trimAl/source 2024-05-22T09:48:01,293 copying funvip/external/trimal.v1.4/trimAl/source/statisticsGaps.o -> build/lib/funvip/external/trimal.v1.4/trimAl/source 2024-05-22T09:48:01,297 copying funvip/external/trimal.v1.4/trimAl/source/utils.cpp -> build/lib/funvip/external/trimal.v1.4/trimAl/source 2024-05-22T09:48:01,300 copying funvip/external/trimal.v1.4/trimAl/source/utils.h -> build/lib/funvip/external/trimal.v1.4/trimAl/source 2024-05-22T09:48:01,302 copying funvip/external/trimal.v1.4/trimAl/source/utils.o -> build/lib/funvip/external/trimal.v1.4/trimAl/source 2024-05-22T09:48:01,306 copying funvip/external/trimal.v1.4/trimAl/source/values.h -> build/lib/funvip/external/trimal.v1.4/trimAl/source 2024-05-22T09:48:01,308 creating build/lib/funvip/test_dataset 2024-05-22T09:48:01,309 creating build/lib/funvip/test_dataset/penicillium 2024-05-22T09:48:01,311 copying funvip/test_dataset/penicillium/Options.config -> build/lib/funvip/test_dataset/penicillium 2024-05-22T09:48:01,313 copying funvip/test_dataset/penicillium/preset.yaml -> build/lib/funvip/test_dataset/penicillium 2024-05-22T09:48:01,316 creating build/lib/funvip/test_dataset/penicillium/DB 2024-05-22T09:48:01,317 copying funvip/test_dataset/penicillium/DB/DB_Penicillium.xlsx -> build/lib/funvip/test_dataset/penicillium/DB 2024-05-22T09:48:01,325 creating build/lib/funvip/test_dataset/penicillium/Query 2024-05-22T09:48:01,326 copying funvip/test_dataset/penicillium/Query/Query.xlsx -> build/lib/funvip/test_dataset/penicillium/Query 2024-05-22T09:48:01,330 creating build/lib/funvip/test_dataset/terrei 2024-05-22T09:48:01,331 copying funvip/test_dataset/terrei/preset.yaml -> build/lib/funvip/test_dataset/terrei 2024-05-22T09:48:01,334 creating build/lib/funvip/test_dataset/terrei/DB 2024-05-22T09:48:01,335 copying funvip/test_dataset/terrei/DB/FunVIP_Aspergillus_db.xlsx -> build/lib/funvip/test_dataset/terrei/DB 2024-05-22T09:48:01,338 creating build/lib/funvip/test_dataset/terrei/Query 2024-05-22T09:48:01,339 copying funvip/test_dataset/terrei/Query/FunVIP_Aspergillus_query.xlsx -> build/lib/funvip/test_dataset/terrei/Query 2024-05-22T09:48:01,352 installing to build/bdist.linux-armv7l/wheel 2024-05-22T09:48:01,353 running install 2024-05-22T09:48:01,378 running install_lib 2024-05-22T09:48:01,382 creating build/bdist.linux-armv7l 2024-05-22T09:48:01,383 creating build/bdist.linux-armv7l/wheel 2024-05-22T09:48:01,385 creating build/bdist.linux-armv7l/wheel/funvip 2024-05-22T09:48:01,386 copying build/lib/funvip/FunVIP_GUI.py -> build/bdist.linux-armv7l/wheel/funvip 2024-05-22T09:48:01,389 copying build/lib/funvip/main.py -> build/bdist.linux-armv7l/wheel/funvip 2024-05-22T09:48:01,392 creating build/bdist.linux-armv7l/wheel/funvip/data 2024-05-22T09:48:01,393 copying build/lib/funvip/data/genus_line.txt -> build/bdist.linux-armv7l/wheel/funvip/data 2024-05-22T09:48:01,396 copying build/lib/funvip/data/Option_manager.xlsx -> build/bdist.linux-armv7l/wheel/funvip/data 2024-05-22T09:48:01,399 copying build/lib/funvip/data/__init__.py -> build/bdist.linux-armv7l/wheel/funvip/data 2024-05-22T09:48:01,401 creating build/bdist.linux-armv7l/wheel/funvip/preset 2024-05-22T09:48:01,402 copying build/lib/funvip/preset/.gitignore -> build/bdist.linux-armv7l/wheel/funvip/preset 2024-05-22T09:48:01,404 copying build/lib/funvip/preset/accurate.yaml -> build/bdist.linux-armv7l/wheel/funvip/preset 2024-05-22T09:48:01,406 copying build/lib/funvip/preset/fast.yaml -> build/bdist.linux-armv7l/wheel/funvip/preset 2024-05-22T09:48:01,409 creating build/bdist.linux-armv7l/wheel/funvip/src 2024-05-22T09:48:01,411 copying build/lib/funvip/src/logger.py -> build/bdist.linux-armv7l/wheel/funvip/src 2024-05-22T09:48:01,413 copying build/lib/funvip/src/dataset.py -> build/bdist.linux-armv7l/wheel/funvip/src 2024-05-22T09:48:01,415 copying build/lib/funvip/src/tree_interpretation.py -> build/bdist.linux-armv7l/wheel/funvip/src 2024-05-22T09:48:01,419 creating build/bdist.linux-armv7l/wheel/funvip/src/templates 2024-05-22T09:48:01,421 copying build/lib/funvip/src/templates/template.html -> build/bdist.linux-armv7l/wheel/funvip/src/templates 2024-05-22T09:48:01,423 copying build/lib/funvip/src/reporter.py -> build/bdist.linux-armv7l/wheel/funvip/src 2024-05-22T09:48:01,426 copying build/lib/funvip/src/logics.py -> build/bdist.linux-armv7l/wheel/funvip/src 2024-05-22T09:48:01,428 copying build/lib/funvip/src/validation.py -> build/bdist.linux-armv7l/wheel/funvip/src 2024-05-22T09:48:01,430 copying build/lib/funvip/src/validate_input.py -> build/bdist.linux-armv7l/wheel/funvip/src 2024-05-22T09:48:01,433 copying build/lib/funvip/src/validate_option.py -> build/bdist.linux-armv7l/wheel/funvip/src 2024-05-22T09:48:01,437 copying build/lib/funvip/src/initialize.py -> build/bdist.linux-armv7l/wheel/funvip/src 2024-05-22T09:48:01,439 copying build/lib/funvip/src/.gitignore -> build/bdist.linux-armv7l/wheel/funvip/src 2024-05-22T09:48:01,441 copying build/lib/funvip/src/hasher.py -> build/bdist.linux-armv7l/wheel/funvip/src 2024-05-22T09:48:01,443 copying build/lib/funvip/src/save.py -> build/bdist.linux-armv7l/wheel/funvip/src 2024-05-22T09:48:01,445 copying build/lib/funvip/src/command.py -> build/bdist.linux-armv7l/wheel/funvip/src 2024-05-22T09:48:01,448 copying build/lib/funvip/src/concatenate.py -> build/bdist.linux-armv7l/wheel/funvip/src 2024-05-22T09:48:01,451 copying build/lib/funvip/src/ext.py -> build/bdist.linux-armv7l/wheel/funvip/src 2024-05-22T09:48:01,454 copying build/lib/funvip/src/opt_generator.py -> build/bdist.linux-armv7l/wheel/funvip/src 2024-05-22T09:48:01,456 copying build/lib/funvip/src/tree_interpretation_pipe.py -> build/bdist.linux-armv7l/wheel/funvip/src 2024-05-22T09:48:01,459 copying build/lib/funvip/src/__init__.py -> build/bdist.linux-armv7l/wheel/funvip/src 2024-05-22T09:48:01,461 copying build/lib/funvip/src/ncbi.py -> build/bdist.linux-armv7l/wheel/funvip/src 2024-05-22T09:48:01,465 creating build/bdist.linux-armv7l/wheel/funvip/src/__pycache__ 2024-05-22T09:48:01,466 copying build/lib/funvip/src/__pycache__/io.cpython-310.pyc -> build/bdist.linux-armv7l/wheel/funvip/src/__pycache__ 2024-05-22T09:48:01,470 copying build/lib/funvip/src/__pycache__/reporter.cpython-39.pyc -> build/bdist.linux-armv7l/wheel/funvip/src/__pycache__ 2024-05-22T09:48:01,473 copying build/lib/funvip/src/__pycache__/ncbi.cpython-39.pyc -> build/bdist.linux-armv7l/wheel/funvip/src/__pycache__ 2024-05-22T09:48:01,475 copying build/lib/funvip/src/__pycache__/initialize.cpython-39.pyc -> build/bdist.linux-armv7l/wheel/funvip/src/__pycache__ 2024-05-22T09:48:01,478 copying build/lib/funvip/src/__pycache__/visualize.cpython-39.pyc -> build/bdist.linux-armv7l/wheel/funvip/src/__pycache__ 2024-05-22T09:48:01,480 copying build/lib/funvip/src/__pycache__/cluster.cpython-39.pyc -> build/bdist.linux-armv7l/wheel/funvip/src/__pycache__ 2024-05-22T09:48:01,483 copying build/lib/funvip/src/__pycache__/modeltest.cpython-39.pyc -> build/bdist.linux-armv7l/wheel/funvip/src/__pycache__ 2024-05-22T09:48:01,485 copying build/lib/funvip/src/__pycache__/io.cpython-39.pyc -> build/bdist.linux-armv7l/wheel/funvip/src/__pycache__ 2024-05-22T09:48:01,488 copying build/lib/funvip/src/__pycache__/ext.cpython-310.pyc -> build/bdist.linux-armv7l/wheel/funvip/src/__pycache__ 2024-05-22T09:48:01,491 copying build/lib/funvip/src/__pycache__/multigene.cpython-39.pyc -> build/bdist.linux-armv7l/wheel/funvip/src/__pycache__ 2024-05-22T09:48:01,493 copying build/lib/funvip/src/__pycache__/logger.cpython-39.pyc -> build/bdist.linux-armv7l/wheel/funvip/src/__pycache__ 2024-05-22T09:48:01,495 copying build/lib/funvip/src/__pycache__/CATV_pipe.cpython-310.pyc -> build/bdist.linux-armv7l/wheel/funvip/src/__pycache__ 2024-05-22T09:48:01,498 copying build/lib/funvip/src/__pycache__/CAT_V.cpython-310.pyc -> build/bdist.linux-armv7l/wheel/funvip/src/__pycache__ 2024-05-22T09:48:01,501 copying build/lib/funvip/src/__pycache__/__init__.cpython-39.pyc -> build/bdist.linux-armv7l/wheel/funvip/src/__pycache__ 2024-05-22T09:48:01,503 copying build/lib/funvip/src/__pycache__/CAT_V_pipe.cpython-39.pyc -> build/bdist.linux-armv7l/wheel/funvip/src/__pycache__ 2024-05-22T09:48:01,506 copying build/lib/funvip/src/__pycache__/dataset.cpython-39.pyc -> build/bdist.linux-armv7l/wheel/funvip/src/__pycache__ 2024-05-22T09:48:01,508 copying build/lib/funvip/src/__pycache__/tool.cpython-39.pyc -> build/bdist.linux-armv7l/wheel/funvip/src/__pycache__ 2024-05-22T09:48:01,511 copying build/lib/funvip/src/__pycache__/opt_generator.cpython-39.pyc -> build/bdist.linux-armv7l/wheel/funvip/src/__pycache__ 2024-05-22T09:48:01,513 copying build/lib/funvip/src/__pycache__/CAT_V.cpython-39.pyc -> build/bdist.linux-armv7l/wheel/funvip/src/__pycache__ 2024-05-22T09:48:01,516 copying build/lib/funvip/src/__pycache__/align.cpython-310.pyc -> build/bdist.linux-armv7l/wheel/funvip/src/__pycache__ 2024-05-22T09:48:01,518 copying build/lib/funvip/src/__pycache__/ext.cpython-39.pyc -> build/bdist.linux-armv7l/wheel/funvip/src/__pycache__ 2024-05-22T09:48:01,521 copying build/lib/funvip/src/__pycache__/validation.cpython-39.pyc -> build/bdist.linux-armv7l/wheel/funvip/src/__pycache__ 2024-05-22T09:48:01,523 copying build/lib/funvip/src/__pycache__/__init__.cpython-310.pyc -> build/bdist.linux-armv7l/wheel/funvip/src/__pycache__ 2024-05-22T09:48:01,526 copying build/lib/funvip/src/__pycache__/search.cpython-39.pyc -> build/bdist.linux-armv7l/wheel/funvip/src/__pycache__ 2024-05-22T09:48:01,528 copying build/lib/funvip/src/__pycache__/hasher.cpython-39.pyc -> build/bdist.linux-armv7l/wheel/funvip/src/__pycache__ 2024-05-22T09:48:01,531 copying build/lib/funvip/src/tree.py -> build/bdist.linux-armv7l/wheel/funvip/src 2024-05-22T09:48:01,534 copying build/lib/funvip/src/trim.py -> build/bdist.linux-armv7l/wheel/funvip/src 2024-05-22T09:48:01,537 copying build/lib/funvip/src/search.py -> build/bdist.linux-armv7l/wheel/funvip/src 2024-05-22T09:48:01,540 copying build/lib/funvip/src/align.py -> build/bdist.linux-armv7l/wheel/funvip/src 2024-05-22T09:48:01,542 copying build/lib/funvip/src/version.py -> build/bdist.linux-armv7l/wheel/funvip/src 2024-05-22T09:48:01,545 copying build/lib/funvip/src/cluster.py -> build/bdist.linux-armv7l/wheel/funvip/src 2024-05-22T09:48:01,548 copying build/lib/funvip/src/modeltest.py -> build/bdist.linux-armv7l/wheel/funvip/src 2024-05-22T09:48:01,551 copying build/lib/funvip/src/tool.py -> build/bdist.linux-armv7l/wheel/funvip/src 2024-05-22T09:48:01,554 copying build/lib/funvip/__init__.py -> build/bdist.linux-armv7l/wheel/funvip 2024-05-22T09:48:01,557 creating build/bdist.linux-armv7l/wheel/funvip/external 2024-05-22T09:48:01,559 copying build/lib/funvip/external/MAFFT_Windows.zip -> build/bdist.linux-armv7l/wheel/funvip/external 2024-05-22T09:48:02,091 copying build/lib/funvip/external/MAFFT_LICENSE -> build/bdist.linux-armv7l/wheel/funvip/external 2024-05-22T09:48:02,094 creating build/bdist.linux-armv7l/wheel/funvip/external/RAxML_Windows 2024-05-22T09:48:02,096 copying build/lib/funvip/external/RAxML_Windows/README -> build/bdist.linux-armv7l/wheel/funvip/external/RAxML_Windows 2024-05-22T09:48:02,098 copying build/lib/funvip/external/RAxML_Windows/GPL-3.0.txt -> build/bdist.linux-armv7l/wheel/funvip/external/RAxML_Windows 2024-05-22T09:48:02,101 copying build/lib/funvip/external/RAxML_Windows/raxmlHPC-PTHREADS-AVX2.exe -> build/bdist.linux-armv7l/wheel/funvip/external/RAxML_Windows 2024-05-22T09:48:02,127 creating build/bdist.linux-armv7l/wheel/funvip/external/FastTree_Windows 2024-05-22T09:48:02,128 copying build/lib/funvip/external/FastTree_Windows/FastTree.exe -> build/bdist.linux-armv7l/wheel/funvip/external/FastTree_Windows 2024-05-22T09:48:02,136 creating build/bdist.linux-armv7l/wheel/funvip/external/mmseqs_Windows 2024-05-22T09:48:02,137 creating build/bdist.linux-armv7l/wheel/funvip/external/mmseqs_Windows/util 2024-05-22T09:48:02,138 copying build/lib/funvip/external/mmseqs_Windows/util/bash-completion.sh -> build/bdist.linux-armv7l/wheel/funvip/external/mmseqs_Windows/util 2024-05-22T09:48:02,141 copying build/lib/funvip/external/mmseqs_Windows/LICENSE.md -> build/bdist.linux-armv7l/wheel/funvip/external/mmseqs_Windows 2024-05-22T09:48:02,145 creating build/bdist.linux-armv7l/wheel/funvip/external/mmseqs_Windows/examples 2024-05-22T09:48:02,146 copying build/lib/funvip/external/mmseqs_Windows/examples/QUERY.fasta -> build/bdist.linux-armv7l/wheel/funvip/external/mmseqs_Windows/examples 2024-05-22T09:48:02,155 creating build/bdist.linux-armv7l/wheel/funvip/external/mmseqs_Windows/matrices 2024-05-22T09:48:02,156 copying build/lib/funvip/external/mmseqs_Windows/matrices/nucleotide.out -> build/bdist.linux-armv7l/wheel/funvip/external/mmseqs_Windows/matrices 2024-05-22T09:48:02,158 copying build/lib/funvip/external/mmseqs_Windows/matrices/blosum60.out -> build/bdist.linux-armv7l/wheel/funvip/external/mmseqs_Windows/matrices 2024-05-22T09:48:02,160 copying build/lib/funvip/external/mmseqs_Windows/matrices/VTML120.out -> build/bdist.linux-armv7l/wheel/funvip/external/mmseqs_Windows/matrices 2024-05-22T09:48:02,162 copying build/lib/funvip/external/mmseqs_Windows/matrices/PAM110.out -> build/bdist.linux-armv7l/wheel/funvip/external/mmseqs_Windows/matrices 2024-05-22T09:48:02,164 copying build/lib/funvip/external/mmseqs_Windows/matrices/PAM90.out -> build/bdist.linux-armv7l/wheel/funvip/external/mmseqs_Windows/matrices 2024-05-22T09:48:02,166 copying build/lib/funvip/external/mmseqs_Windows/matrices/blosum65.out -> build/bdist.linux-armv7l/wheel/funvip/external/mmseqs_Windows/matrices 2024-05-22T09:48:02,168 copying build/lib/funvip/external/mmseqs_Windows/matrices/blosum35.out -> build/bdist.linux-armv7l/wheel/funvip/external/mmseqs_Windows/matrices 2024-05-22T09:48:02,170 copying build/lib/funvip/external/mmseqs_Windows/matrices/PAM120.out -> build/bdist.linux-armv7l/wheel/funvip/external/mmseqs_Windows/matrices 2024-05-22T09:48:02,172 copying build/lib/funvip/external/mmseqs_Windows/matrices/PAM20.out -> build/bdist.linux-armv7l/wheel/funvip/external/mmseqs_Windows/matrices 2024-05-22T09:48:02,174 copying build/lib/funvip/external/mmseqs_Windows/matrices/blosum62.out -> build/bdist.linux-armv7l/wheel/funvip/external/mmseqs_Windows/matrices 2024-05-22T09:48:02,177 copying build/lib/funvip/external/mmseqs_Windows/matrices/blosum80.out -> build/bdist.linux-armv7l/wheel/funvip/external/mmseqs_Windows/matrices 2024-05-22T09:48:02,179 copying build/lib/funvip/external/mmseqs_Windows/matrices/PAM50.out -> build/bdist.linux-armv7l/wheel/funvip/external/mmseqs_Windows/matrices 2024-05-22T09:48:02,181 copying build/lib/funvip/external/mmseqs_Windows/matrices/blosum45.out -> build/bdist.linux-armv7l/wheel/funvip/external/mmseqs_Windows/matrices 2024-05-22T09:48:02,183 copying build/lib/funvip/external/mmseqs_Windows/matrices/VTML160.out -> build/bdist.linux-armv7l/wheel/funvip/external/mmseqs_Windows/matrices 2024-05-22T09:48:02,185 copying build/lib/funvip/external/mmseqs_Windows/matrices/PAM160.out -> build/bdist.linux-armv7l/wheel/funvip/external/mmseqs_Windows/matrices 2024-05-22T09:48:02,186 copying build/lib/funvip/external/mmseqs_Windows/matrices/PAM180.out -> build/bdist.linux-armv7l/wheel/funvip/external/mmseqs_Windows/matrices 2024-05-22T09:48:02,188 copying build/lib/funvip/external/mmseqs_Windows/matrices/blosum50.out -> build/bdist.linux-armv7l/wheel/funvip/external/mmseqs_Windows/matrices 2024-05-22T09:48:02,190 copying build/lib/funvip/external/mmseqs_Windows/matrices/PAM30.out -> build/bdist.linux-armv7l/wheel/funvip/external/mmseqs_Windows/matrices 2024-05-22T09:48:02,192 copying build/lib/funvip/external/mmseqs_Windows/matrices/PAM10.out -> build/bdist.linux-armv7l/wheel/funvip/external/mmseqs_Windows/matrices 2024-05-22T09:48:02,194 copying build/lib/funvip/external/mmseqs_Windows/matrices/PAM40.out -> build/bdist.linux-armv7l/wheel/funvip/external/mmseqs_Windows/matrices 2024-05-22T09:48:02,196 copying build/lib/funvip/external/mmseqs_Windows/matrices/PAM190.out -> build/bdist.linux-armv7l/wheel/funvip/external/mmseqs_Windows/matrices 2024-05-22T09:48:02,198 copying build/lib/funvip/external/mmseqs_Windows/matrices/blosum70.out -> build/bdist.linux-armv7l/wheel/funvip/external/mmseqs_Windows/matrices 2024-05-22T09:48:02,200 copying build/lib/funvip/external/mmseqs_Windows/matrices/PAM170.out -> build/bdist.linux-armv7l/wheel/funvip/external/mmseqs_Windows/matrices 2024-05-22T09:48:02,202 copying build/lib/funvip/external/mmseqs_Windows/matrices/blosum55.out -> build/bdist.linux-armv7l/wheel/funvip/external/mmseqs_Windows/matrices 2024-05-22T09:48:02,204 copying build/lib/funvip/external/mmseqs_Windows/matrices/blosum90.out -> build/bdist.linux-armv7l/wheel/funvip/external/mmseqs_Windows/matrices 2024-05-22T09:48:02,206 copying build/lib/funvip/external/mmseqs_Windows/matrices/PAM70.out -> build/bdist.linux-armv7l/wheel/funvip/external/mmseqs_Windows/matrices 2024-05-22T09:48:02,208 copying build/lib/funvip/external/mmseqs_Windows/matrices/blosum95.out -> build/bdist.linux-armv7l/wheel/funvip/external/mmseqs_Windows/matrices 2024-05-22T09:48:02,210 copying build/lib/funvip/external/mmseqs_Windows/matrices/VTML40.out -> build/bdist.linux-armv7l/wheel/funvip/external/mmseqs_Windows/matrices 2024-05-22T09:48:02,212 copying build/lib/funvip/external/mmseqs_Windows/matrices/PAM150.out -> build/bdist.linux-armv7l/wheel/funvip/external/mmseqs_Windows/matrices 2024-05-22T09:48:02,214 copying build/lib/funvip/external/mmseqs_Windows/matrices/blosum85.out -> build/bdist.linux-armv7l/wheel/funvip/external/mmseqs_Windows/matrices 2024-05-22T09:48:02,216 copying build/lib/funvip/external/mmseqs_Windows/matrices/VTML20.out -> build/bdist.linux-armv7l/wheel/funvip/external/mmseqs_Windows/matrices 2024-05-22T09:48:02,219 copying build/lib/funvip/external/mmseqs_Windows/matrices/PAM100.out -> build/bdist.linux-armv7l/wheel/funvip/external/mmseqs_Windows/matrices 2024-05-22T09:48:02,221 copying build/lib/funvip/external/mmseqs_Windows/matrices/blosum75.out -> build/bdist.linux-armv7l/wheel/funvip/external/mmseqs_Windows/matrices 2024-05-22T09:48:02,223 copying build/lib/funvip/external/mmseqs_Windows/matrices/PAM80.out -> build/bdist.linux-armv7l/wheel/funvip/external/mmseqs_Windows/matrices 2024-05-22T09:48:02,225 copying build/lib/funvip/external/mmseqs_Windows/matrices/PAM60.out -> build/bdist.linux-armv7l/wheel/funvip/external/mmseqs_Windows/matrices 2024-05-22T09:48:02,227 copying build/lib/funvip/external/mmseqs_Windows/matrices/PAM130.out -> build/bdist.linux-armv7l/wheel/funvip/external/mmseqs_Windows/matrices 2024-05-22T09:48:02,229 copying build/lib/funvip/external/mmseqs_Windows/matrices/blosum100.out -> build/bdist.linux-armv7l/wheel/funvip/external/mmseqs_Windows/matrices 2024-05-22T09:48:02,231 copying build/lib/funvip/external/mmseqs_Windows/matrices/PAM140.out -> build/bdist.linux-armv7l/wheel/funvip/external/mmseqs_Windows/matrices 2024-05-22T09:48:02,233 copying build/lib/funvip/external/mmseqs_Windows/matrices/VTML10.out -> build/bdist.linux-armv7l/wheel/funvip/external/mmseqs_Windows/matrices 2024-05-22T09:48:02,235 copying build/lib/funvip/external/mmseqs_Windows/matrices/blosum40.out -> build/bdist.linux-armv7l/wheel/funvip/external/mmseqs_Windows/matrices 2024-05-22T09:48:02,237 copying build/lib/funvip/external/mmseqs_Windows/matrices/blosum30.out -> build/bdist.linux-armv7l/wheel/funvip/external/mmseqs_Windows/matrices 2024-05-22T09:48:02,238 copying build/lib/funvip/external/mmseqs_Windows/matrices/VTML80.out -> build/bdist.linux-armv7l/wheel/funvip/external/mmseqs_Windows/matrices 2024-05-22T09:48:02,241 creating build/bdist.linux-armv7l/wheel/funvip/external/mmseqs_Windows/bin 2024-05-22T09:48:02,242 copying build/lib/funvip/external/mmseqs_Windows/bin/cyggcc_s-seh-1.dll -> build/bdist.linux-armv7l/wheel/funvip/external/mmseqs_Windows/bin 2024-05-22T09:48:02,246 copying build/lib/funvip/external/mmseqs_Windows/bin/mmseqs.exe -> build/bdist.linux-armv7l/wheel/funvip/external/mmseqs_Windows/bin 2024-05-22T09:48:02,433 copying build/lib/funvip/external/mmseqs_Windows/bin/cyggomp-1.dll -> build/bdist.linux-armv7l/wheel/funvip/external/mmseqs_Windows/bin 2024-05-22T09:48:02,440 copying build/lib/funvip/external/mmseqs_Windows/bin/cygbz2-1.dll -> build/bdist.linux-armv7l/wheel/funvip/external/mmseqs_Windows/bin 2024-05-22T09:48:02,443 copying build/lib/funvip/external/mmseqs_Windows/bin/cygstdc++-6.dll -> build/bdist.linux-armv7l/wheel/funvip/external/mmseqs_Windows/bin 2024-05-22T09:48:02,476 copying build/lib/funvip/external/mmseqs_Windows/bin/cygz.dll -> build/bdist.linux-armv7l/wheel/funvip/external/mmseqs_Windows/bin 2024-05-22T09:48:02,480 copying build/lib/funvip/external/mmseqs_Windows/bin/busybox.exe -> build/bdist.linux-armv7l/wheel/funvip/external/mmseqs_Windows/bin 2024-05-22T09:48:02,491 copying build/lib/funvip/external/mmseqs_Windows/bin/cygwin1.dll -> build/bdist.linux-armv7l/wheel/funvip/external/mmseqs_Windows/bin 2024-05-22T09:48:02,548 copying build/lib/funvip/external/mmseqs_Windows/mmseqs.bat -> build/bdist.linux-armv7l/wheel/funvip/external/mmseqs_Windows 2024-05-22T09:48:02,550 copying build/lib/funvip/external/mmseqs_Windows/README.md -> build/bdist.linux-armv7l/wheel/funvip/external/mmseqs_Windows 2024-05-22T09:48:02,553 creating build/bdist.linux-armv7l/wheel/funvip/external/Gblocks_Windows_0.91b 2024-05-22T09:48:02,555 creating build/bdist.linux-armv7l/wheel/funvip/external/Gblocks_Windows_0.91b/Gblocks_0.91b 2024-05-22T09:48:02,556 copying build/lib/funvip/external/Gblocks_Windows_0.91b/Gblocks_0.91b/nad3.pir -> build/bdist.linux-armv7l/wheel/funvip/external/Gblocks_Windows_0.91b/Gblocks_0.91b 2024-05-22T09:48:02,558 creating build/bdist.linux-armv7l/wheel/funvip/external/Gblocks_Windows_0.91b/Gblocks_0.91b/Documentation 2024-05-22T09:48:02,560 copying build/lib/funvip/external/Gblocks_Windows_0.91b/Gblocks_0.91b/Documentation/Gblocks_documentation.html -> build/bdist.linux-armv7l/wheel/funvip/external/Gblocks_Windows_0.91b/Gblocks_0.91b/Documentation 2024-05-22T09:48:02,563 copying build/lib/funvip/external/Gblocks_Windows_0.91b/Gblocks_0.91b/paths -> build/bdist.linux-armv7l/wheel/funvip/external/Gblocks_Windows_0.91b/Gblocks_0.91b 2024-05-22T09:48:02,566 copying build/lib/funvip/external/Gblocks_Windows_0.91b/Gblocks_0.91b/Gblocks.exe -> build/bdist.linux-armv7l/wheel/funvip/external/Gblocks_Windows_0.91b/Gblocks_0.91b 2024-05-22T09:48:02,573 creating build/bdist.linux-armv7l/wheel/funvip/external/Gblocks_Windows_0.91b/Gblocks_0.91b/more_alignments 2024-05-22T09:48:02,574 copying build/lib/funvip/external/Gblocks_Windows_0.91b/Gblocks_0.91b/more_alignments/nad3.pir -> build/bdist.linux-armv7l/wheel/funvip/external/Gblocks_Windows_0.91b/Gblocks_0.91b/more_alignments 2024-05-22T09:48:02,576 copying build/lib/funvip/external/Gblocks_Windows_0.91b/Gblocks_0.91b/more_alignments/cox2.pir -> build/bdist.linux-armv7l/wheel/funvip/external/Gblocks_Windows_0.91b/Gblocks_0.91b/more_alignments 2024-05-22T09:48:02,578 copying build/lib/funvip/external/Gblocks_Windows_0.91b/Gblocks_0.91b/more_alignments/cytb.pir -> build/bdist.linux-armv7l/wheel/funvip/external/Gblocks_Windows_0.91b/Gblocks_0.91b/more_alignments 2024-05-22T09:48:02,580 copying build/lib/funvip/external/Gblocks_Windows_0.91b/Gblocks_0.91b/more_alignments/nad5.pir -> build/bdist.linux-armv7l/wheel/funvip/external/Gblocks_Windows_0.91b/Gblocks_0.91b/more_alignments 2024-05-22T09:48:02,583 copying build/lib/funvip/external/__init__.py -> build/bdist.linux-armv7l/wheel/funvip/external 2024-05-22T09:48:02,586 creating build/bdist.linux-armv7l/wheel/funvip/external/iqtree 2024-05-22T09:48:02,587 copying build/lib/funvip/external/iqtree/example.nex -> build/bdist.linux-armv7l/wheel/funvip/external/iqtree 2024-05-22T09:48:02,589 copying build/lib/funvip/external/iqtree/example.cf -> build/bdist.linux-armv7l/wheel/funvip/external/iqtree 2024-05-22T09:48:02,628 creating build/bdist.linux-armv7l/wheel/funvip/external/iqtree/bin 2024-05-22T09:48:02,629 copying build/lib/funvip/external/iqtree/bin/libiomp5md.dll -> build/bdist.linux-armv7l/wheel/funvip/external/iqtree/bin 2024-05-22T09:48:02,647 copying build/lib/funvip/external/iqtree/bin/iqtree2.exe -> build/bdist.linux-armv7l/wheel/funvip/external/iqtree/bin 2024-05-22T09:48:02,818 copying build/lib/funvip/external/iqtree/bin/iqtree2-click.exe -> build/bdist.linux-armv7l/wheel/funvip/external/iqtree/bin 2024-05-22T09:48:03,009 copying build/lib/funvip/external/iqtree/example.phy -> build/bdist.linux-armv7l/wheel/funvip/external/iqtree 2024-05-22T09:48:03,013 copying build/lib/funvip/external/iqtree/models.nex -> build/bdist.linux-armv7l/wheel/funvip/external/iqtree 2024-05-22T09:48:03,018 creating build/bdist.linux-armv7l/wheel/funvip/external/BLAST_Windows 2024-05-22T09:48:03,019 creating build/bdist.linux-armv7l/wheel/funvip/external/BLAST_Windows/bin 2024-05-22T09:48:03,021 copying build/lib/funvip/external/BLAST_Windows/bin/legacy_blast.pl -> build/bdist.linux-armv7l/wheel/funvip/external/BLAST_Windows/bin 2024-05-22T09:48:03,024 copying build/lib/funvip/external/BLAST_Windows/bin/makeblastdb.exe -> build/bdist.linux-armv7l/wheel/funvip/external/BLAST_Windows/bin 2024-05-22T09:48:03,240 copying build/lib/funvip/external/BLAST_Windows/bin/nghttp2.dll -> build/bdist.linux-armv7l/wheel/funvip/external/BLAST_Windows/bin 2024-05-22T09:48:03,244 copying build/lib/funvip/external/BLAST_Windows/bin/update_blastdb.pl -> build/bdist.linux-armv7l/wheel/funvip/external/BLAST_Windows/bin 2024-05-22T09:48:03,247 copying build/lib/funvip/external/BLAST_Windows/bin/blastn.exe -> build/bdist.linux-armv7l/wheel/funvip/external/BLAST_Windows/bin 2024-05-22T09:48:03,535 copying build/lib/funvip/external/BLAST_Windows/bin/get_species_taxids.sh -> build/bdist.linux-armv7l/wheel/funvip/external/BLAST_Windows/bin 2024-05-22T09:48:03,537 copying build/lib/funvip/external/BLAST_Windows/bin/cleanup-blastdb-volumes.py -> build/bdist.linux-armv7l/wheel/funvip/external/BLAST_Windows/bin 2024-05-22T09:48:03,539 copying build/lib/funvip/external/BLAST_Windows/Uninstall-ncbi-blast-2.12.0+.exe -> build/bdist.linux-armv7l/wheel/funvip/external/BLAST_Windows 2024-05-22T09:48:03,543 creating build/bdist.linux-armv7l/wheel/funvip/external/BLAST_Windows/doc 2024-05-22T09:48:03,545 copying build/lib/funvip/external/BLAST_Windows/doc/README.txt -> build/bdist.linux-armv7l/wheel/funvip/external/BLAST_Windows/doc 2024-05-22T09:48:03,547 creating build/bdist.linux-armv7l/wheel/funvip/external/trimal.v1.4 2024-05-22T09:48:03,548 creating build/bdist.linux-armv7l/wheel/funvip/external/trimal.v1.4/trimAl 2024-05-22T09:48:03,549 copying build/lib/funvip/external/trimal.v1.4/trimAl/README -> build/bdist.linux-armv7l/wheel/funvip/external/trimal.v1.4/trimAl 2024-05-22T09:48:03,551 copying build/lib/funvip/external/trimal.v1.4/trimAl/AUTHORS -> build/bdist.linux-armv7l/wheel/funvip/external/trimal.v1.4/trimAl 2024-05-22T09:48:03,552 copying build/lib/funvip/external/trimal.v1.4/trimAl/LICENSE -> build/bdist.linux-armv7l/wheel/funvip/external/trimal.v1.4/trimAl 2024-05-22T09:48:03,555 creating build/bdist.linux-armv7l/wheel/funvip/external/trimal.v1.4/trimAl/bin 2024-05-22T09:48:03,556 copying build/lib/funvip/external/trimal.v1.4/trimAl/bin/trimal.exe -> build/bdist.linux-armv7l/wheel/funvip/external/trimal.v1.4/trimAl/bin 2024-05-22T09:48:03,565 copying build/lib/funvip/external/trimal.v1.4/trimAl/bin/libstdc++-6.dll -> build/bdist.linux-armv7l/wheel/funvip/external/trimal.v1.4/trimAl/bin 2024-05-22T09:48:03,592 copying build/lib/funvip/external/trimal.v1.4/trimAl/bin/libgcc_s_dw2-1.dll -> build/bdist.linux-armv7l/wheel/funvip/external/trimal.v1.4/trimAl/bin 2024-05-22T09:48:03,608 creating build/bdist.linux-armv7l/wheel/funvip/external/trimal.v1.4/trimAl/scripts 2024-05-22T09:48:03,610 copying build/lib/funvip/external/trimal.v1.4/trimAl/scripts/set_manual_boundaries.py -> build/bdist.linux-armv7l/wheel/funvip/external/trimal.v1.4/trimAl/scripts 2024-05-22T09:48:03,613 copying build/lib/funvip/external/trimal.v1.4/trimAl/scripts/get_sequences_gaps_ratio.py -> build/bdist.linux-armv7l/wheel/funvip/external/trimal.v1.4/trimAl/scripts 2024-05-22T09:48:03,615 copying build/lib/funvip/external/trimal.v1.4/trimAl/scripts/get_sequence_representative_from_alignment.py -> build/bdist.linux-armv7l/wheel/funvip/external/trimal.v1.4/trimAl/scripts 2024-05-22T09:48:03,617 copying build/lib/funvip/external/trimal.v1.4/trimAl/scripts/check_codon_alignments.py -> build/bdist.linux-armv7l/wheel/funvip/external/trimal.v1.4/trimAl/scripts 2024-05-22T09:48:03,619 copying build/lib/funvip/external/trimal.v1.4/trimAl/scripts/compare_trimmed_msas.sh -> build/bdist.linux-armv7l/wheel/funvip/external/trimal.v1.4/trimAl/scripts 2024-05-22T09:48:03,622 copying build/lib/funvip/external/trimal.v1.4/trimAl/scripts/generateRandomAlignmentsUsingAsSeedRealAlignments.py -> build/bdist.linux-armv7l/wheel/funvip/external/trimal.v1.4/trimAl/scripts 2024-05-22T09:48:03,624 copying build/lib/funvip/external/trimal.v1.4/trimAl/scripts/remove_shorter_sequences.py -> build/bdist.linux-armv7l/wheel/funvip/external/trimal.v1.4/trimAl/scripts 2024-05-22T09:48:03,626 copying build/lib/funvip/external/trimal.v1.4/trimAl/scripts/selective_trimming_for_dNdS_analyses.based_neighbours.py -> build/bdist.linux-armv7l/wheel/funvip/external/trimal.v1.4/trimAl/scripts 2024-05-22T09:48:03,629 copying build/lib/funvip/external/trimal.v1.4/trimAl/scripts/generate_trimmed_msas.sh -> build/bdist.linux-armv7l/wheel/funvip/external/trimal.v1.4/trimAl/scripts 2024-05-22T09:48:03,634 creating build/bdist.linux-armv7l/wheel/funvip/external/trimal.v1.4/trimAl/source 2024-05-22T09:48:03,635 copying build/lib/funvip/external/trimal.v1.4/trimAl/source/alignment.o -> build/bdist.linux-armv7l/wheel/funvip/external/trimal.v1.4/trimAl/source 2024-05-22T09:48:03,640 copying build/lib/funvip/external/trimal.v1.4/trimAl/source/alignment.h -> build/bdist.linux-armv7l/wheel/funvip/external/trimal.v1.4/trimAl/source 2024-05-22T09:48:03,643 copying build/lib/funvip/external/trimal.v1.4/trimAl/source/statisticsGaps.o -> build/bdist.linux-armv7l/wheel/funvip/external/trimal.v1.4/trimAl/source 2024-05-22T09:48:03,646 copying build/lib/funvip/external/trimal.v1.4/trimAl/source/statisticsConservation.cpp -> build/bdist.linux-armv7l/wheel/funvip/external/trimal.v1.4/trimAl/source 2024-05-22T09:48:03,649 copying build/lib/funvip/external/trimal.v1.4/trimAl/source/similarityMatrix.o -> build/bdist.linux-armv7l/wheel/funvip/external/trimal.v1.4/trimAl/source 2024-05-22T09:48:03,651 copying build/lib/funvip/external/trimal.v1.4/trimAl/source/autAlignment.cpp -> build/bdist.linux-armv7l/wheel/funvip/external/trimal.v1.4/trimAl/source 2024-05-22T09:48:03,653 copying build/lib/funvip/external/trimal.v1.4/trimAl/source/sequencesMatrix.h -> build/bdist.linux-armv7l/wheel/funvip/external/trimal.v1.4/trimAl/source 2024-05-22T09:48:03,655 copying build/lib/funvip/external/trimal.v1.4/trimAl/source/alignment.cpp -> build/bdist.linux-armv7l/wheel/funvip/external/trimal.v1.4/trimAl/source 2024-05-22T09:48:03,659 copying build/lib/funvip/external/trimal.v1.4/trimAl/source/statisticsFiles.h -> build/bdist.linux-armv7l/wheel/funvip/external/trimal.v1.4/trimAl/source 2024-05-22T09:48:03,661 copying build/lib/funvip/external/trimal.v1.4/trimAl/source/sequencesMatrix.o -> build/bdist.linux-armv7l/wheel/funvip/external/trimal.v1.4/trimAl/source 2024-05-22T09:48:03,663 copying build/lib/funvip/external/trimal.v1.4/trimAl/source/similarityMatrix.h -> build/bdist.linux-armv7l/wheel/funvip/external/trimal.v1.4/trimAl/source 2024-05-22T09:48:03,665 copying build/lib/funvip/external/trimal.v1.4/trimAl/source/rwAlignment.o -> build/bdist.linux-armv7l/wheel/funvip/external/trimal.v1.4/trimAl/source 2024-05-22T09:48:03,669 copying build/lib/funvip/external/trimal.v1.4/trimAl/source/statisticsConservation.o -> build/bdist.linux-armv7l/wheel/funvip/external/trimal.v1.4/trimAl/source 2024-05-22T09:48:03,671 copying build/lib/funvip/external/trimal.v1.4/trimAl/source/utils.cpp -> build/bdist.linux-armv7l/wheel/funvip/external/trimal.v1.4/trimAl/source 2024-05-22T09:48:03,674 copying build/lib/funvip/external/trimal.v1.4/trimAl/source/values.h -> build/bdist.linux-armv7l/wheel/funvip/external/trimal.v1.4/trimAl/source 2024-05-22T09:48:03,676 copying build/lib/funvip/external/trimal.v1.4/trimAl/source/sequencesMatrix.cpp -> build/bdist.linux-armv7l/wheel/funvip/external/trimal.v1.4/trimAl/source 2024-05-22T09:48:03,678 copying build/lib/funvip/external/trimal.v1.4/trimAl/source/defines.h -> build/bdist.linux-armv7l/wheel/funvip/external/trimal.v1.4/trimAl/source 2024-05-22T09:48:03,680 copying build/lib/funvip/external/trimal.v1.4/trimAl/source/statisticsGaps.cpp -> build/bdist.linux-armv7l/wheel/funvip/external/trimal.v1.4/trimAl/source 2024-05-22T09:48:03,683 copying build/lib/funvip/external/trimal.v1.4/trimAl/source/utils.h -> build/bdist.linux-armv7l/wheel/funvip/external/trimal.v1.4/trimAl/source 2024-05-22T09:48:03,685 copying build/lib/funvip/external/trimal.v1.4/trimAl/source/main.cpp -> build/bdist.linux-armv7l/wheel/funvip/external/trimal.v1.4/trimAl/source 2024-05-22T09:48:03,689 copying build/lib/funvip/external/trimal.v1.4/trimAl/source/makefile.MacOS -> build/bdist.linux-armv7l/wheel/funvip/external/trimal.v1.4/trimAl/source 2024-05-22T09:48:03,691 copying build/lib/funvip/external/trimal.v1.4/trimAl/source/statisticsGaps.h -> build/bdist.linux-armv7l/wheel/funvip/external/trimal.v1.4/trimAl/source 2024-05-22T09:48:03,693 copying build/lib/funvip/external/trimal.v1.4/trimAl/source/statAl.cpp -> build/bdist.linux-armv7l/wheel/funvip/external/trimal.v1.4/trimAl/source 2024-05-22T09:48:03,695 copying build/lib/funvip/external/trimal.v1.4/trimAl/source/makefile -> build/bdist.linux-armv7l/wheel/funvip/external/trimal.v1.4/trimAl/source 2024-05-22T09:48:03,697 copying build/lib/funvip/external/trimal.v1.4/trimAl/source/statisticsFiles.cpp -> build/bdist.linux-armv7l/wheel/funvip/external/trimal.v1.4/trimAl/source 2024-05-22T09:48:03,699 copying build/lib/funvip/external/trimal.v1.4/trimAl/source/rwAlignment.cpp -> build/bdist.linux-armv7l/wheel/funvip/external/trimal.v1.4/trimAl/source 2024-05-22T09:48:03,702 copying build/lib/funvip/external/trimal.v1.4/trimAl/source/similarityMatrix.cpp -> build/bdist.linux-armv7l/wheel/funvip/external/trimal.v1.4/trimAl/source 2024-05-22T09:48:03,705 copying build/lib/funvip/external/trimal.v1.4/trimAl/source/utils.o -> build/bdist.linux-armv7l/wheel/funvip/external/trimal.v1.4/trimAl/source 2024-05-22T09:48:03,707 copying build/lib/funvip/external/trimal.v1.4/trimAl/source/compareFiles.h -> build/bdist.linux-armv7l/wheel/funvip/external/trimal.v1.4/trimAl/source 2024-05-22T09:48:03,709 copying build/lib/funvip/external/trimal.v1.4/trimAl/source/compareFiles.cpp -> build/bdist.linux-armv7l/wheel/funvip/external/trimal.v1.4/trimAl/source 2024-05-22T09:48:03,711 copying build/lib/funvip/external/trimal.v1.4/trimAl/source/statal.exe -> build/bdist.linux-armv7l/wheel/funvip/external/trimal.v1.4/trimAl/source 2024-05-22T09:48:03,718 copying build/lib/funvip/external/trimal.v1.4/trimAl/source/autAlignment.o -> build/bdist.linux-armv7l/wheel/funvip/external/trimal.v1.4/trimAl/source 2024-05-22T09:48:03,720 copying build/lib/funvip/external/trimal.v1.4/trimAl/source/readAl.cpp -> build/bdist.linux-armv7l/wheel/funvip/external/trimal.v1.4/trimAl/source 2024-05-22T09:48:03,723 copying build/lib/funvip/external/trimal.v1.4/trimAl/source/statisticsConservation.h -> build/bdist.linux-armv7l/wheel/funvip/external/trimal.v1.4/trimAl/source 2024-05-22T09:48:03,725 copying build/lib/funvip/external/trimal.v1.4/trimAl/source/compareFiles.o -> build/bdist.linux-armv7l/wheel/funvip/external/trimal.v1.4/trimAl/source 2024-05-22T09:48:03,727 copying build/lib/funvip/external/trimal.v1.4/trimAl/source/readal.exe -> build/bdist.linux-armv7l/wheel/funvip/external/trimal.v1.4/trimAl/source 2024-05-22T09:48:03,736 copying build/lib/funvip/external/trimal.v1.4/trimAl/CHANGELOG -> build/bdist.linux-armv7l/wheel/funvip/external/trimal.v1.4/trimAl 2024-05-22T09:48:03,738 creating build/bdist.linux-armv7l/wheel/funvip/test_dataset 2024-05-22T09:48:03,740 creating build/bdist.linux-armv7l/wheel/funvip/test_dataset/terrei 2024-05-22T09:48:03,741 creating build/bdist.linux-armv7l/wheel/funvip/test_dataset/terrei/DB 2024-05-22T09:48:03,742 copying build/lib/funvip/test_dataset/terrei/DB/FunVIP_Aspergillus_db.xlsx -> build/bdist.linux-armv7l/wheel/funvip/test_dataset/terrei/DB 2024-05-22T09:48:03,745 copying build/lib/funvip/test_dataset/terrei/preset.yaml -> build/bdist.linux-armv7l/wheel/funvip/test_dataset/terrei 2024-05-22T09:48:03,752 creating build/bdist.linux-armv7l/wheel/funvip/test_dataset/terrei/Query 2024-05-22T09:48:03,753 copying build/lib/funvip/test_dataset/terrei/Query/FunVIP_Aspergillus_query.xlsx -> build/bdist.linux-armv7l/wheel/funvip/test_dataset/terrei/Query 2024-05-22T09:48:03,757 creating build/bdist.linux-armv7l/wheel/funvip/test_dataset/penicillium 2024-05-22T09:48:03,758 creating build/bdist.linux-armv7l/wheel/funvip/test_dataset/penicillium/DB 2024-05-22T09:48:03,759 copying build/lib/funvip/test_dataset/penicillium/DB/DB_Penicillium.xlsx -> build/bdist.linux-armv7l/wheel/funvip/test_dataset/penicillium/DB 2024-05-22T09:48:03,767 copying build/lib/funvip/test_dataset/penicillium/preset.yaml -> build/bdist.linux-armv7l/wheel/funvip/test_dataset/penicillium 2024-05-22T09:48:03,769 copying build/lib/funvip/test_dataset/penicillium/Options.config -> build/bdist.linux-armv7l/wheel/funvip/test_dataset/penicillium 2024-05-22T09:48:03,772 creating build/bdist.linux-armv7l/wheel/funvip/test_dataset/penicillium/Query 2024-05-22T09:48:03,773 copying build/lib/funvip/test_dataset/penicillium/Query/Query.xlsx -> build/bdist.linux-armv7l/wheel/funvip/test_dataset/penicillium/Query 2024-05-22T09:48:03,776 running install_egg_info 2024-05-22T09:48:03,780 Copying FunVIP.egg-info to build/bdist.linux-armv7l/wheel/FunVIP-0.3.22.1-py3.11.egg-info 2024-05-22T09:48:03,794 running install_scripts 2024-05-22T09:48:03,815 creating build/bdist.linux-armv7l/wheel/FunVIP-0.3.22.1.dist-info/WHEEL 2024-05-22T09:48:03,818 creating '/tmp/pip-wheel-vimpv5g9/.tmp-rb7wm0q6/FunVIP-0.3.22.1-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2024-05-22T09:48:03,822 adding 'funvip/FunVIP_GUI.py' 2024-05-22T09:48:03,823 adding 'funvip/__init__.py' 2024-05-22T09:48:03,825 adding 'funvip/main.py' 2024-05-22T09:48:03,829 adding 'funvip/data/Option_manager.xlsx' 2024-05-22T09:48:03,830 adding 'funvip/data/__init__.py' 2024-05-22T09:48:03,837 adding 'funvip/data/genus_line.txt' 2024-05-22T09:48:03,844 adding 'funvip/external/MAFFT_LICENSE' 2024-05-22T09:48:06,966 adding 'funvip/external/MAFFT_Windows.zip' 2024-05-22T09:48:07,137 adding 'funvip/external/__init__.py' 2024-05-22T09:48:07,146 adding 'funvip/external/BLAST_Windows/Uninstall-ncbi-blast-2.12.0+.exe' 2024-05-22T09:48:10,619 adding 'funvip/external/BLAST_Windows/bin/blastn.exe' 2024-05-22T09:48:10,740 adding 'funvip/external/BLAST_Windows/bin/cleanup-blastdb-volumes.py' 2024-05-22T09:48:10,742 adding 'funvip/external/BLAST_Windows/bin/get_species_taxids.sh' 2024-05-22T09:48:10,746 adding 'funvip/external/BLAST_Windows/bin/legacy_blast.pl' 2024-05-22T09:48:13,328 adding 'funvip/external/BLAST_Windows/bin/makeblastdb.exe' 2024-05-22T09:48:13,442 adding 'funvip/external/BLAST_Windows/bin/nghttp2.dll' 2024-05-22T09:48:13,447 adding 'funvip/external/BLAST_Windows/bin/update_blastdb.pl' 2024-05-22T09:48:13,449 adding 'funvip/external/BLAST_Windows/doc/README.txt' 2024-05-22T09:48:13,506 adding 'funvip/external/FastTree_Windows/FastTree.exe' 2024-05-22T09:48:13,548 adding 'funvip/external/Gblocks_Windows_0.91b/Gblocks_0.91b/Gblocks.exe' 2024-05-22T09:48:13,551 adding 'funvip/external/Gblocks_Windows_0.91b/Gblocks_0.91b/nad3.pir' 2024-05-22T09:48:13,552 adding 'funvip/external/Gblocks_Windows_0.91b/Gblocks_0.91b/paths' 2024-05-22T09:48:13,557 adding 'funvip/external/Gblocks_Windows_0.91b/Gblocks_0.91b/Documentation/Gblocks_documentation.html' 2024-05-22T09:48:13,560 adding 'funvip/external/Gblocks_Windows_0.91b/Gblocks_0.91b/more_alignments/cox2.pir' 2024-05-22T09:48:13,561 adding 'funvip/external/Gblocks_Windows_0.91b/Gblocks_0.91b/more_alignments/cytb.pir' 2024-05-22T09:48:13,563 adding 'funvip/external/Gblocks_Windows_0.91b/Gblocks_0.91b/more_alignments/nad3.pir' 2024-05-22T09:48:13,566 adding 'funvip/external/Gblocks_Windows_0.91b/Gblocks_0.91b/more_alignments/nad5.pir' 2024-05-22T09:48:13,572 adding 'funvip/external/RAxML_Windows/GPL-3.0.txt' 2024-05-22T09:48:13,573 adding 'funvip/external/RAxML_Windows/README' 2024-05-22T09:48:13,866 adding 'funvip/external/RAxML_Windows/raxmlHPC-PTHREADS-AVX2.exe' 2024-05-22T09:48:13,957 adding 'funvip/external/iqtree/example.cf' 2024-05-22T09:48:13,973 adding 'funvip/external/iqtree/example.nex' 2024-05-22T09:48:13,985 adding 'funvip/external/iqtree/example.phy' 2024-05-22T09:48:14,015 adding 'funvip/external/iqtree/models.nex' 2024-05-22T09:48:16,109 adding 'funvip/external/iqtree/bin/iqtree2-click.exe' 2024-05-22T09:48:18,275 adding 'funvip/external/iqtree/bin/iqtree2.exe' 2024-05-22T09:48:18,536 adding 'funvip/external/iqtree/bin/libiomp5md.dll' 2024-05-22T09:48:18,550 adding 'funvip/external/mmseqs_Windows/LICENSE.md' 2024-05-22T09:48:18,552 adding 'funvip/external/mmseqs_Windows/README.md' 2024-05-22T09:48:18,554 adding 'funvip/external/mmseqs_Windows/mmseqs.bat' 2024-05-22T09:48:18,686 adding 'funvip/external/mmseqs_Windows/bin/busybox.exe' 2024-05-22T09:48:18,700 adding 'funvip/external/mmseqs_Windows/bin/cygbz2-1.dll' 2024-05-22T09:48:18,713 adding 'funvip/external/mmseqs_Windows/bin/cyggcc_s-seh-1.dll' 2024-05-22T09:48:18,756 adding 'funvip/external/mmseqs_Windows/bin/cyggomp-1.dll' 2024-05-22T09:48:19,019 adding 'funvip/external/mmseqs_Windows/bin/cygstdc++-6.dll' 2024-05-22T09:48:19,624 adding 'funvip/external/mmseqs_Windows/bin/cygwin1.dll' 2024-05-22T09:48:19,661 adding 'funvip/external/mmseqs_Windows/bin/cygz.dll' 2024-05-22T09:48:23,023 adding 'funvip/external/mmseqs_Windows/bin/mmseqs.exe' 2024-05-22T09:48:23,165 adding 'funvip/external/mmseqs_Windows/examples/QUERY.fasta' 2024-05-22T09:48:23,170 adding 'funvip/external/mmseqs_Windows/matrices/PAM10.out' 2024-05-22T09:48:23,171 adding 'funvip/external/mmseqs_Windows/matrices/PAM100.out' 2024-05-22T09:48:23,172 adding 'funvip/external/mmseqs_Windows/matrices/PAM110.out' 2024-05-22T09:48:23,174 adding 'funvip/external/mmseqs_Windows/matrices/PAM120.out' 2024-05-22T09:48:23,175 adding 'funvip/external/mmseqs_Windows/matrices/PAM130.out' 2024-05-22T09:48:23,176 adding 'funvip/external/mmseqs_Windows/matrices/PAM140.out' 2024-05-22T09:48:23,178 adding 'funvip/external/mmseqs_Windows/matrices/PAM150.out' 2024-05-22T09:48:23,179 adding 'funvip/external/mmseqs_Windows/matrices/PAM160.out' 2024-05-22T09:48:23,180 adding 'funvip/external/mmseqs_Windows/matrices/PAM170.out' 2024-05-22T09:48:23,181 adding 'funvip/external/mmseqs_Windows/matrices/PAM180.out' 2024-05-22T09:48:23,183 adding 'funvip/external/mmseqs_Windows/matrices/PAM190.out' 2024-05-22T09:48:23,184 adding 'funvip/external/mmseqs_Windows/matrices/PAM20.out' 2024-05-22T09:48:23,186 adding 'funvip/external/mmseqs_Windows/matrices/PAM30.out' 2024-05-22T09:48:23,187 adding 'funvip/external/mmseqs_Windows/matrices/PAM40.out' 2024-05-22T09:48:23,188 adding 'funvip/external/mmseqs_Windows/matrices/PAM50.out' 2024-05-22T09:48:23,190 adding 'funvip/external/mmseqs_Windows/matrices/PAM60.out' 2024-05-22T09:48:23,191 adding 'funvip/external/mmseqs_Windows/matrices/PAM70.out' 2024-05-22T09:48:23,193 adding 'funvip/external/mmseqs_Windows/matrices/PAM80.out' 2024-05-22T09:48:23,194 adding 'funvip/external/mmseqs_Windows/matrices/PAM90.out' 2024-05-22T09:48:23,195 adding 'funvip/external/mmseqs_Windows/matrices/VTML10.out' 2024-05-22T09:48:23,197 adding 'funvip/external/mmseqs_Windows/matrices/VTML120.out' 2024-05-22T09:48:23,198 adding 'funvip/external/mmseqs_Windows/matrices/VTML160.out' 2024-05-22T09:48:23,199 adding 'funvip/external/mmseqs_Windows/matrices/VTML20.out' 2024-05-22T09:48:23,201 adding 'funvip/external/mmseqs_Windows/matrices/VTML40.out' 2024-05-22T09:48:23,202 adding 'funvip/external/mmseqs_Windows/matrices/VTML80.out' 2024-05-22T09:48:23,204 adding 'funvip/external/mmseqs_Windows/matrices/blosum100.out' 2024-05-22T09:48:23,205 adding 'funvip/external/mmseqs_Windows/matrices/blosum30.out' 2024-05-22T09:48:23,207 adding 'funvip/external/mmseqs_Windows/matrices/blosum35.out' 2024-05-22T09:48:23,208 adding 'funvip/external/mmseqs_Windows/matrices/blosum40.out' 2024-05-22T09:48:23,210 adding 'funvip/external/mmseqs_Windows/matrices/blosum45.out' 2024-05-22T09:48:23,211 adding 'funvip/external/mmseqs_Windows/matrices/blosum50.out' 2024-05-22T09:48:23,213 adding 'funvip/external/mmseqs_Windows/matrices/blosum55.out' 2024-05-22T09:48:23,214 adding 'funvip/external/mmseqs_Windows/matrices/blosum60.out' 2024-05-22T09:48:23,216 adding 'funvip/external/mmseqs_Windows/matrices/blosum62.out' 2024-05-22T09:48:23,217 adding 'funvip/external/mmseqs_Windows/matrices/blosum65.out' 2024-05-22T09:48:23,219 adding 'funvip/external/mmseqs_Windows/matrices/blosum70.out' 2024-05-22T09:48:23,220 adding 'funvip/external/mmseqs_Windows/matrices/blosum75.out' 2024-05-22T09:48:23,222 adding 'funvip/external/mmseqs_Windows/matrices/blosum80.out' 2024-05-22T09:48:23,223 adding 'funvip/external/mmseqs_Windows/matrices/blosum85.out' 2024-05-22T09:48:23,225 adding 'funvip/external/mmseqs_Windows/matrices/blosum90.out' 2024-05-22T09:48:23,226 adding 'funvip/external/mmseqs_Windows/matrices/blosum95.out' 2024-05-22T09:48:23,227 adding 'funvip/external/mmseqs_Windows/matrices/nucleotide.out' 2024-05-22T09:48:23,230 adding 'funvip/external/mmseqs_Windows/util/bash-completion.sh' 2024-05-22T09:48:23,232 adding 'funvip/external/trimal.v1.4/trimAl/AUTHORS' 2024-05-22T09:48:23,234 adding 'funvip/external/trimal.v1.4/trimAl/CHANGELOG' 2024-05-22T09:48:23,240 adding 'funvip/external/trimal.v1.4/trimAl/LICENSE' 2024-05-22T09:48:23,241 adding 'funvip/external/trimal.v1.4/trimAl/README' 2024-05-22T09:48:23,348 adding 'funvip/external/trimal.v1.4/trimAl/bin/libgcc_s_dw2-1.dll' 2024-05-22T09:48:23,520 adding 'funvip/external/trimal.v1.4/trimAl/bin/libstdc++-6.dll' 2024-05-22T09:48:23,588 adding 'funvip/external/trimal.v1.4/trimAl/bin/trimal.exe' 2024-05-22T09:48:23,593 adding 'funvip/external/trimal.v1.4/trimAl/scripts/check_codon_alignments.py' 2024-05-22T09:48:23,594 adding 'funvip/external/trimal.v1.4/trimAl/scripts/compare_trimmed_msas.sh' 2024-05-22T09:48:23,595 adding 'funvip/external/trimal.v1.4/trimAl/scripts/generateRandomAlignmentsUsingAsSeedRealAlignments.py' 2024-05-22T09:48:23,599 adding 'funvip/external/trimal.v1.4/trimAl/scripts/generate_trimmed_msas.sh' 2024-05-22T09:48:23,601 adding 'funvip/external/trimal.v1.4/trimAl/scripts/get_sequence_representative_from_alignment.py' 2024-05-22T09:48:23,602 adding 'funvip/external/trimal.v1.4/trimAl/scripts/get_sequences_gaps_ratio.py' 2024-05-22T09:48:23,603 adding 'funvip/external/trimal.v1.4/trimAl/scripts/remove_shorter_sequences.py' 2024-05-22T09:48:23,605 adding 'funvip/external/trimal.v1.4/trimAl/scripts/selective_trimming_for_dNdS_analyses.based_neighbours.py' 2024-05-22T09:48:23,607 adding 'funvip/external/trimal.v1.4/trimAl/scripts/set_manual_boundaries.py' 2024-05-22T09:48:23,620 adding 'funvip/external/trimal.v1.4/trimAl/source/alignment.cpp' 2024-05-22T09:48:23,622 adding 'funvip/external/trimal.v1.4/trimAl/source/alignment.h' 2024-05-22T09:48:23,646 adding 'funvip/external/trimal.v1.4/trimAl/source/alignment.o' 2024-05-22T09:48:23,649 adding 'funvip/external/trimal.v1.4/trimAl/source/autAlignment.cpp' 2024-05-22T09:48:23,652 adding 'funvip/external/trimal.v1.4/trimAl/source/autAlignment.o' 2024-05-22T09:48:23,654 adding 'funvip/external/trimal.v1.4/trimAl/source/compareFiles.cpp' 2024-05-22T09:48:23,656 adding 'funvip/external/trimal.v1.4/trimAl/source/compareFiles.h' 2024-05-22T09:48:23,659 adding 'funvip/external/trimal.v1.4/trimAl/source/compareFiles.o' 2024-05-22T09:48:23,660 adding 'funvip/external/trimal.v1.4/trimAl/source/defines.h' 2024-05-22T09:48:23,666 adding 'funvip/external/trimal.v1.4/trimAl/source/main.cpp' 2024-05-22T09:48:23,668 adding 'funvip/external/trimal.v1.4/trimAl/source/makefile' 2024-05-22T09:48:23,669 adding 'funvip/external/trimal.v1.4/trimAl/source/makefile.MacOS' 2024-05-22T09:48:23,671 adding 'funvip/external/trimal.v1.4/trimAl/source/readAl.cpp' 2024-05-22T09:48:23,718 adding 'funvip/external/trimal.v1.4/trimAl/source/readal.exe' 2024-05-22T09:48:23,726 adding 'funvip/external/trimal.v1.4/trimAl/source/rwAlignment.cpp' 2024-05-22T09:48:23,741 adding 'funvip/external/trimal.v1.4/trimAl/source/rwAlignment.o' 2024-05-22T09:48:23,743 adding 'funvip/external/trimal.v1.4/trimAl/source/sequencesMatrix.cpp' 2024-05-22T09:48:23,746 adding 'funvip/external/trimal.v1.4/trimAl/source/sequencesMatrix.h' 2024-05-22T09:48:23,748 adding 'funvip/external/trimal.v1.4/trimAl/source/sequencesMatrix.o' 2024-05-22T09:48:23,750 adding 'funvip/external/trimal.v1.4/trimAl/source/similarityMatrix.cpp' 2024-05-22T09:48:23,751 adding 'funvip/external/trimal.v1.4/trimAl/source/similarityMatrix.h' 2024-05-22T09:48:23,754 adding 'funvip/external/trimal.v1.4/trimAl/source/similarityMatrix.o' 2024-05-22T09:48:23,757 adding 'funvip/external/trimal.v1.4/trimAl/source/statAl.cpp' 2024-05-22T09:48:23,805 adding 'funvip/external/trimal.v1.4/trimAl/source/statal.exe' 2024-05-22T09:48:23,809 adding 'funvip/external/trimal.v1.4/trimAl/source/statisticsConservation.cpp' 2024-05-22T09:48:23,811 adding 'funvip/external/trimal.v1.4/trimAl/source/statisticsConservation.h' 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sha256=6464c8044637848420c9213e543ed7b9357ce36d794c79a28b76c20cdb04226f 2024-05-22T09:48:47,989 Stored in directory: /tmp/pip-ephem-wheel-cache-bd1bgyns/wheels/6a/89/ed/f0ab92269e5487196ff2a63988080eac671e5c1af36e150407 2024-05-22T09:48:48,024 Successfully built funvip 2024-05-22T09:48:49,409 Removed build tracker: '/tmp/pip-build-tracker-xa9at6z3'