2024-05-22T10:51:35,779 Created temporary directory: /tmp/pip-build-tracker-g9uf08uw 2024-05-22T10:51:35,781 Initialized build tracking at /tmp/pip-build-tracker-g9uf08uw 2024-05-22T10:51:35,781 Created build tracker: /tmp/pip-build-tracker-g9uf08uw 2024-05-22T10:51:35,781 Entered build tracker: /tmp/pip-build-tracker-g9uf08uw 2024-05-22T10:51:35,782 Created temporary directory: /tmp/pip-wheel-q38eaaez 2024-05-22T10:51:35,786 Created temporary directory: /tmp/pip-ephem-wheel-cache-pzybx3x9 2024-05-22T10:51:35,810 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2024-05-22T10:51:35,813 2 location(s) to search for versions of kssdtree: 2024-05-22T10:51:35,813 * https://pypi.org/simple/kssdtree/ 2024-05-22T10:51:35,813 * https://www.piwheels.org/simple/kssdtree/ 2024-05-22T10:51:35,814 Fetching project page and analyzing links: https://pypi.org/simple/kssdtree/ 2024-05-22T10:51:35,814 Getting page https://pypi.org/simple/kssdtree/ 2024-05-22T10:51:35,816 Found index url https://pypi.org/simple/ 2024-05-22T10:51:35,867 Fetched page https://pypi.org/simple/kssdtree/ as application/vnd.pypi.simple.v1+json 2024-05-22T10:51:35,869 Found link https://files.pythonhosted.org/packages/d5/1e/9e5c5945a44bb40002d1c259f734a531999fa6e87db89fe7c7ddcfc583cc/kssdtree-1.1.1.tar.gz (from https://pypi.org/simple/kssdtree/), version: 1.1.1 2024-05-22T10:51:35,869 Found link https://files.pythonhosted.org/packages/9a/4c/6516f734f5860e4b30f9091aaac5811663bfae72c4de4ae6566c89192767/kssdtree-1.1.2.tar.gz (from https://pypi.org/simple/kssdtree/), version: 1.1.2 2024-05-22T10:51:35,869 Found link https://files.pythonhosted.org/packages/a4/cd/f2954686c636e853cc3fda197c459195377b78288874cf7d68218a8bdbf4/kssdtree-1.1.3.tar.gz (from https://pypi.org/simple/kssdtree/), version: 1.1.3 2024-05-22T10:51:35,870 Fetching project page and analyzing links: https://www.piwheels.org/simple/kssdtree/ 2024-05-22T10:51:35,870 Getting page https://www.piwheels.org/simple/kssdtree/ 2024-05-22T10:51:35,871 Found index url https://www.piwheels.org/simple/ 2024-05-22T10:51:35,939 Fetched page https://www.piwheels.org/simple/kssdtree/ as text/html 2024-05-22T10:51:35,944 Skipping link: No binaries permitted for kssdtree: https://www.piwheels.org/simple/kssdtree/kssdtree-1.1.3-cp311-cp311-linux_armv6l.whl#sha256=6b76f3b3f532934ad49a829e7bf8176af580f4687f1491c49c3f571bf081f961 (from https://www.piwheels.org/simple/kssdtree/) 2024-05-22T10:51:35,945 Skipping link: No binaries permitted for kssdtree: https://www.piwheels.org/simple/kssdtree/kssdtree-1.1.3-cp311-cp311-linux_armv7l.whl#sha256=6b76f3b3f532934ad49a829e7bf8176af580f4687f1491c49c3f571bf081f961 (from https://www.piwheels.org/simple/kssdtree/) 2024-05-22T10:51:35,945 Skipping link: No binaries permitted for kssdtree: https://www.piwheels.org/simple/kssdtree/kssdtree-1.1.3-cp37-cp37m-linux_armv6l.whl#sha256=d179f6c6c0ad4e0f06950e1609118b065b3476c47446325f6614bdbef5ede0d0 (from https://www.piwheels.org/simple/kssdtree/) 2024-05-22T10:51:35,945 Skipping link: No binaries permitted for kssdtree: https://www.piwheels.org/simple/kssdtree/kssdtree-1.1.3-cp37-cp37m-linux_armv7l.whl#sha256=d179f6c6c0ad4e0f06950e1609118b065b3476c47446325f6614bdbef5ede0d0 (from https://www.piwheels.org/simple/kssdtree/) 2024-05-22T10:51:35,945 Skipping link: No binaries permitted for kssdtree: https://www.piwheels.org/simple/kssdtree/kssdtree-1.1.2-cp311-cp311-linux_armv6l.whl#sha256=146b572fde14b0d0770e1c1cd90870ad6db4af293ade814fed7a49e3857f1444 (from https://www.piwheels.org/simple/kssdtree/) 2024-05-22T10:51:35,946 Skipping link: No binaries permitted for kssdtree: https://www.piwheels.org/simple/kssdtree/kssdtree-1.1.2-cp311-cp311-linux_armv7l.whl#sha256=146b572fde14b0d0770e1c1cd90870ad6db4af293ade814fed7a49e3857f1444 (from https://www.piwheels.org/simple/kssdtree/) 2024-05-22T10:51:35,946 Skipping link: No binaries permitted for kssdtree: https://www.piwheels.org/simple/kssdtree/kssdtree-1.1.2-cp37-cp37m-linux_armv6l.whl#sha256=8c0cc1974033765d6eeefdb635a506385b5f38e00361bd6de47ff1a83b07e12a (from https://www.piwheels.org/simple/kssdtree/) 2024-05-22T10:51:35,946 Skipping link: No binaries permitted for kssdtree: https://www.piwheels.org/simple/kssdtree/kssdtree-1.1.2-cp37-cp37m-linux_armv7l.whl#sha256=8c0cc1974033765d6eeefdb635a506385b5f38e00361bd6de47ff1a83b07e12a (from https://www.piwheels.org/simple/kssdtree/) 2024-05-22T10:51:35,946 Skipping link: No binaries permitted for kssdtree: https://www.piwheels.org/simple/kssdtree/kssdtree-1.1.2-cp39-cp39-linux_armv6l.whl#sha256=9f3fe3d3b4b4bde8b34a8f964ebde72f1efcc7833b9a0b34f6b9c8ff3ed595db (from https://www.piwheels.org/simple/kssdtree/) 2024-05-22T10:51:35,946 Skipping link: No binaries permitted for kssdtree: https://www.piwheels.org/simple/kssdtree/kssdtree-1.1.2-cp39-cp39-linux_armv7l.whl#sha256=9f3fe3d3b4b4bde8b34a8f964ebde72f1efcc7833b9a0b34f6b9c8ff3ed595db (from https://www.piwheels.org/simple/kssdtree/) 2024-05-22T10:51:35,947 Skipping link: No binaries permitted for kssdtree: https://www.piwheels.org/simple/kssdtree/kssdtree-1.1.1-cp311-cp311-linux_armv6l.whl#sha256=29b8e7f4a3e60084db855e6d587231253771ad57184a3265922d659512e136fb (from https://www.piwheels.org/simple/kssdtree/) 2024-05-22T10:51:35,947 Skipping link: No binaries permitted for kssdtree: https://www.piwheels.org/simple/kssdtree/kssdtree-1.1.1-cp311-cp311-linux_armv7l.whl#sha256=29b8e7f4a3e60084db855e6d587231253771ad57184a3265922d659512e136fb (from https://www.piwheels.org/simple/kssdtree/) 2024-05-22T10:51:35,947 Skipping link: No binaries permitted for kssdtree: https://www.piwheels.org/simple/kssdtree/kssdtree-1.1.1-cp37-cp37m-linux_armv6l.whl#sha256=34b00b40f17a95b2cc5cbabd880acc2c56996457b0acd265cace6966c10b9575 (from https://www.piwheels.org/simple/kssdtree/) 2024-05-22T10:51:35,947 Skipping link: No binaries permitted for kssdtree: https://www.piwheels.org/simple/kssdtree/kssdtree-1.1.1-cp37-cp37m-linux_armv7l.whl#sha256=34b00b40f17a95b2cc5cbabd880acc2c56996457b0acd265cace6966c10b9575 (from https://www.piwheels.org/simple/kssdtree/) 2024-05-22T10:51:35,947 Skipping link: No binaries permitted for kssdtree: https://www.piwheels.org/simple/kssdtree/kssdtree-1.1.1-cp39-cp39-linux_armv6l.whl#sha256=04471408d60c00f568404b1ab01ca89567b36a1aa50ef6041aceef07ed1e45f4 (from https://www.piwheels.org/simple/kssdtree/) 2024-05-22T10:51:35,948 Skipping link: No binaries permitted for kssdtree: https://www.piwheels.org/simple/kssdtree/kssdtree-1.1.1-cp39-cp39-linux_armv7l.whl#sha256=04471408d60c00f568404b1ab01ca89567b36a1aa50ef6041aceef07ed1e45f4 (from https://www.piwheels.org/simple/kssdtree/) 2024-05-22T10:51:35,948 Skipping link: not a file: https://www.piwheels.org/simple/kssdtree/ 2024-05-22T10:51:35,948 Skipping link: not a file: https://pypi.org/simple/kssdtree/ 2024-05-22T10:51:35,966 Given no hashes to check 1 links for project 'kssdtree': discarding no candidates 2024-05-22T10:51:35,983 Collecting kssdtree==1.1.3 2024-05-22T10:51:35,986 Created temporary directory: /tmp/pip-unpack-246fl9ok 2024-05-22T10:51:36,038 Downloading kssdtree-1.1.3.tar.gz (113 kB) 2024-05-22T10:51:36,250 Added kssdtree==1.1.3 from https://files.pythonhosted.org/packages/a4/cd/f2954686c636e853cc3fda197c459195377b78288874cf7d68218a8bdbf4/kssdtree-1.1.3.tar.gz to build tracker '/tmp/pip-build-tracker-g9uf08uw' 2024-05-22T10:51:36,252 Running setup.py (path:/tmp/pip-wheel-q38eaaez/kssdtree_bd15b38898b94f02937e2b2d44a3f66a/setup.py) egg_info for package kssdtree 2024-05-22T10:51:36,253 Created temporary directory: /tmp/pip-pip-egg-info-81oe4y2n 2024-05-22T10:51:36,253 Preparing metadata (setup.py): started 2024-05-22T10:51:36,254 Running command python setup.py egg_info 2024-05-22T10:51:37,340 running egg_info 2024-05-22T10:51:37,342 creating /tmp/pip-pip-egg-info-81oe4y2n/kssdtree.egg-info 2024-05-22T10:51:37,365 writing /tmp/pip-pip-egg-info-81oe4y2n/kssdtree.egg-info/PKG-INFO 2024-05-22T10:51:37,368 writing dependency_links to /tmp/pip-pip-egg-info-81oe4y2n/kssdtree.egg-info/dependency_links.txt 2024-05-22T10:51:37,370 writing requirements to /tmp/pip-pip-egg-info-81oe4y2n/kssdtree.egg-info/requires.txt 2024-05-22T10:51:37,371 writing top-level names to /tmp/pip-pip-egg-info-81oe4y2n/kssdtree.egg-info/top_level.txt 2024-05-22T10:51:37,373 writing manifest file '/tmp/pip-pip-egg-info-81oe4y2n/kssdtree.egg-info/SOURCES.txt' 2024-05-22T10:51:37,469 reading manifest file '/tmp/pip-pip-egg-info-81oe4y2n/kssdtree.egg-info/SOURCES.txt' 2024-05-22T10:51:37,470 reading manifest template 'MANIFEST.in' 2024-05-22T10:51:37,488 writing manifest file '/tmp/pip-pip-egg-info-81oe4y2n/kssdtree.egg-info/SOURCES.txt' 2024-05-22T10:51:37,586 Preparing metadata (setup.py): finished with status 'done' 2024-05-22T10:51:37,591 Source in /tmp/pip-wheel-q38eaaez/kssdtree_bd15b38898b94f02937e2b2d44a3f66a has version 1.1.3, which satisfies requirement kssdtree==1.1.3 from https://files.pythonhosted.org/packages/a4/cd/f2954686c636e853cc3fda197c459195377b78288874cf7d68218a8bdbf4/kssdtree-1.1.3.tar.gz 2024-05-22T10:51:37,591 Removed kssdtree==1.1.3 from https://files.pythonhosted.org/packages/a4/cd/f2954686c636e853cc3fda197c459195377b78288874cf7d68218a8bdbf4/kssdtree-1.1.3.tar.gz from build tracker '/tmp/pip-build-tracker-g9uf08uw' 2024-05-22T10:51:37,596 Created temporary directory: /tmp/pip-unpack-dicauxpk 2024-05-22T10:51:37,597 Created temporary directory: /tmp/pip-unpack-oxi58pe0 2024-05-22T10:51:37,602 Building wheels for collected packages: kssdtree 2024-05-22T10:51:37,607 Created temporary directory: /tmp/pip-wheel-gus9lggl 2024-05-22T10:51:37,607 Building wheel for kssdtree (setup.py): started 2024-05-22T10:51:37,608 Destination directory: /tmp/pip-wheel-gus9lggl 2024-05-22T10:51:37,608 Running command python setup.py bdist_wheel 2024-05-22T10:51:38,683 running bdist_wheel 2024-05-22T10:51:38,774 running build 2024-05-22T10:51:38,774 running build_py 2024-05-22T10:51:38,799 creating build 2024-05-22T10:51:38,800 creating build/lib.linux-armv7l-cpython-39 2024-05-22T10:51:38,801 copying kssdtree.py -> build/lib.linux-armv7l-cpython-39 2024-05-22T10:51:38,804 copying toolutils.py -> build/lib.linux-armv7l-cpython-39 2024-05-22T10:51:38,806 running egg_info 2024-05-22T10:51:38,857 writing kssdtree.egg-info/PKG-INFO 2024-05-22T10:51:38,860 writing dependency_links to kssdtree.egg-info/dependency_links.txt 2024-05-22T10:51:38,862 writing requirements to kssdtree.egg-info/requires.txt 2024-05-22T10:51:38,863 writing top-level names to kssdtree.egg-info/top_level.txt 2024-05-22T10:51:38,888 reading manifest file 'kssdtree.egg-info/SOURCES.txt' 2024-05-22T10:51:38,892 reading manifest template 'MANIFEST.in' 2024-05-22T10:51:38,909 writing manifest file 'kssdtree.egg-info/SOURCES.txt' 2024-05-22T10:51:38,911 running build_ext 2024-05-22T10:51:39,403 building 'kssd' extension 2024-05-22T10:51:39,404 creating build/temp.linux-armv7l-cpython-39 2024-05-22T10:51:39,405 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ikssdheaders -I/usr/include/python3.9 -c co2mco.c -o build/temp.linux-armv7l-cpython-39/co2mco.o -fopenmp 2024-05-22T10:51:39,567 co2mco.c: In function ‘cdb_kmerf2kmerdb’: 2024-05-22T10:51:39,568 co2mco.c:109:32: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2024-05-22T10:51:39,568 109 | for (unsigned int i = 0; i < comp_num; i++) { 2024-05-22T10:51:39,568 | ^ 2024-05-22T10:51:39,571 co2mco.c: In function ‘co2unitllmco’: 2024-05-22T10:51:39,571 co2mco.c:191:32: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2024-05-22T10:51:39,571 191 | for (unsigned int i = 0; i < bin_sz; i++) { 2024-05-22T10:51:39,571 | ^ 2024-05-22T10:51:40,192 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ikssdheaders -I/usr/include/python3.9 -c command_composite.c -o build/temp.linux-armv7l-cpython-39/command_composite.o -fopenmp 2024-05-22T10:51:40,492 command_composite.c: In function ‘get_species_abundance’: 2024-05-22T10:51:40,493 command_composite.c:32:34: warning: ‘%s’ directive argument is null [-Wformat-overflow=] 2024-05-22T10:51:40,493 32 | if (ref_dstat_fpath == NULL) fprintf(stderr, "cannot find %s under %s ", co_dstat, ref_dstat_fpath); 2024-05-22T10:51:40,493 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-05-22T10:51:40,493 command_composite.c:34:34: warning: ‘%s’ directive argument is null [-Wformat-overflow=] 2024-05-22T10:51:40,494 34 | if (qry_dstat_fpath == NULL) fprintf(stderr, "cannot find %s under %s ", co_dstat, qry_dstat_fpath); 2024-05-22T10:51:40,494 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-05-22T10:51:40,495 command_composite.c:64:37: warning: ‘.’ directive writing 1 byte into a region of size between 0 and 255 [-Wformat-overflow=] 2024-05-22T10:51:40,495 64 | sprintf(tmpfname, "%s/%s.%d", composite_opt->refdir, skch_prefix, c); 2024-05-22T10:51:40,495 | ^ 2024-05-22T10:51:40,495 command_composite.c:64:13: note: ‘sprintf’ output 4 or more bytes (assuming 259) into a destination of size 256 2024-05-22T10:51:40,496 64 | sprintf(tmpfname, "%s/%s.%d", composite_opt->refdir, skch_prefix, c); 2024-05-22T10:51:40,496 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-05-22T10:51:40,496 command_composite.c:70:37: warning: ‘.’ directive writing 1 byte into a region of size between 0 and 255 [-Wformat-overflow=] 2024-05-22T10:51:40,496 70 | sprintf(tmpfname, "%s/%s.%d", composite_opt->refdir, idx_prefix, c); 2024-05-22T10:51:40,496 | ^ 2024-05-22T10:51:40,497 command_composite.c:70:13: note: ‘sprintf’ output 4 or more bytes (assuming 259) into a destination of size 256 2024-05-22T10:51:40,497 70 | sprintf(tmpfname, "%s/%s.%d", composite_opt->refdir, idx_prefix, c); 2024-05-22T10:51:40,497 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-05-22T10:51:40,497 command_composite.c:76:37: warning: ‘.’ directive writing 1 byte into a region of size between 0 and 255 [-Wformat-overflow=] 2024-05-22T10:51:40,497 76 | sprintf(tmpfname, "%s/%s.%d", composite_opt->qrydir, skch_prefix, c); 2024-05-22T10:51:40,498 | ^ 2024-05-22T10:51:40,498 command_composite.c:76:13: note: ‘sprintf’ output 4 or more bytes (assuming 259) into a destination of size 256 2024-05-22T10:51:40,498 76 | sprintf(tmpfname, "%s/%s.%d", composite_opt->qrydir, skch_prefix, c); 2024-05-22T10:51:40,498 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-05-22T10:51:40,498 command_composite.c:82:37: warning: ‘.’ directive writing 1 byte into a region of size between 0 and 255 [-Wformat-overflow=] 2024-05-22T10:51:40,499 82 | sprintf(tmpfname, "%s/%s.%d", composite_opt->qrydir, idx_prefix, c); 2024-05-22T10:51:40,499 | ^ 2024-05-22T10:51:40,499 command_composite.c:82:13: note: ‘sprintf’ output 4 or more bytes (assuming 259) into a destination of size 256 2024-05-22T10:51:40,499 82 | sprintf(tmpfname, "%s/%s.%d", composite_opt->qrydir, idx_prefix, c); 2024-05-22T10:51:40,499 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-05-22T10:51:40,499 command_composite.c:88:37: warning: ‘.’ directive writing 1 byte into a region of size between 0 and 255 [-Wformat-overflow=] 2024-05-22T10:51:40,500 88 | sprintf(tmpfname, "%s/%s.%d.a", composite_opt->qrydir, skch_prefix, c); 2024-05-22T10:51:40,500 | ^ 2024-05-22T10:51:40,500 command_composite.c:88:13: note: ‘sprintf’ output 6 or more bytes (assuming 261) into a destination of size 256 2024-05-22T10:51:40,500 88 | sprintf(tmpfname, "%s/%s.%d.a", composite_opt->qrydir, skch_prefix, c); 2024-05-22T10:51:40,500 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-05-22T10:51:40,737 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ikssdheaders -I/usr/include/python3.9 -c command_dist.c -o build/temp.linux-armv7l-cpython-39/command_dist.o -fopenmp 2024-05-22T10:51:40,946 command_dist.c: In function ‘mco_cbd_co_dist’: 2024-05-22T10:51:40,947 command_dist.c:678:27: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 2024-05-22T10:51:40,947 678 | printf("disf_sz=%lu\trefnum=%d\tqrynum=%d\tnum_mapping_distf=%dbnum_infile=%d\t\t%lu\t%lu\tflag1:Ok\n", 2024-05-22T10:51:40,947 | ~~^ 2024-05-22T10:51:40,947 | | 2024-05-22T10:51:40,947 | long unsigned int 2024-05-22T10:51:40,947 | %u 2024-05-22T10:51:40,948 679 | disf_sz, mco_dstat_readin.infile_num, co_dstat_readin.infile_num, num_mapping_distf, bnum_infile, 2024-05-22T10:51:40,948 | ~~~~~~~ 2024-05-22T10:51:40,948 | | 2024-05-22T10:51:40,948 | size_t {aka unsigned int} 2024-05-22T10:51:40,948 command_dist.c:678:92: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 7 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 2024-05-22T10:51:40,948 678 | printf("disf_sz=%lu\trefnum=%d\tqrynum=%d\tnum_mapping_distf=%dbnum_infile=%d\t\t%lu\t%lu\tflag1:Ok\n", 2024-05-22T10:51:40,948 | ~~^ 2024-05-22T10:51:40,948 | | 2024-05-22T10:51:40,948 | long unsigned int 2024-05-22T10:51:40,949 | %u 2024-05-22T10:51:40,949 679 | disf_sz, mco_dstat_readin.infile_num, co_dstat_readin.infile_num, num_mapping_distf, bnum_infile, 2024-05-22T10:51:40,949 680 | maplength, (size_t) b * unitsz_distf_mapped); 2024-05-22T10:51:40,949 | ~~~~~~~~~ 2024-05-22T10:51:40,949 | | 2024-05-22T10:51:40,949 | size_t {aka unsigned int} 2024-05-22T10:51:40,949 command_dist.c:678:97: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 8 has type ‘unsigned int’ [-Wformat=] 2024-05-22T10:51:40,950 678 | printf("disf_sz=%lu\trefnum=%d\tqrynum=%d\tnum_mapping_distf=%dbnum_infile=%d\t\t%lu\t%lu\tflag1:Ok\n", 2024-05-22T10:51:40,950 | ~~^ 2024-05-22T10:51:40,950 | | 2024-05-22T10:51:40,950 | long unsigned int 2024-05-22T10:51:40,950 | %u 2024-05-22T10:51:40,950 679 | disf_sz, mco_dstat_readin.infile_num, co_dstat_readin.infile_num, num_mapping_distf, bnum_infile, 2024-05-22T10:51:40,950 680 | maplength, (size_t) b * unitsz_distf_mapped); 2024-05-22T10:51:40,951 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-05-22T10:51:40,951 | | 2024-05-22T10:51:40,951 | unsigned int 2024-05-22T10:51:40,952 command_dist.c:716:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2024-05-22T10:51:40,952 716 | for (int n = 0; n < fco_pos[k + 1] - fco_pos[k]; n++) { 2024-05-22T10:51:40,952 | ^ 2024-05-22T10:51:40,958 command_dist.c: In function ‘mco_cbdco_nobin_dist’: 2024-05-22T10:51:40,959 command_dist.c:864:27: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 2024-05-22T10:51:40,959 864 | printf("disf_sz=%lu\trefnum=%d\tqrynum=%d\tnum_mapping_distf=%d\tbatch_qrynum=%d\t%lu\t%lu\n", disf_sz, 2024-05-22T10:51:40,959 | ~~^ ~~~~~~~ 2024-05-22T10:51:40,959 | | | 2024-05-22T10:51:40,959 | long unsigned int size_t {aka unsigned int} 2024-05-22T10:51:40,960 | %u 2024-05-22T10:51:40,960 command_dist.c:864:93: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 7 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 2024-05-22T10:51:40,961 864 | printf("disf_sz=%lu\trefnum=%d\tqrynum=%d\tnum_mapping_distf=%d\tbatch_qrynum=%d\t%lu\t%lu\n", disf_sz, 2024-05-22T10:51:40,961 | ~~^ 2024-05-22T10:51:40,961 | | 2024-05-22T10:51:40,961 | long unsigned int 2024-05-22T10:51:40,961 | %u 2024-05-22T10:51:40,961 865 | mco_dstat_readin.infile_num, co_dstat_readin.infile_num, num_mapping_distf, bnum_infile, maplength, 2024-05-22T10:51:40,961 | ~~~~~~~~~ 2024-05-22T10:51:40,961 | | 2024-05-22T10:51:40,961 | size_t {aka unsigned int} 2024-05-22T10:51:40,962 command_dist.c:864:98: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 8 has type ‘unsigned int’ [-Wformat=] 2024-05-22T10:51:40,962 864 | printf("disf_sz=%lu\trefnum=%d\tqrynum=%d\tnum_mapping_distf=%d\tbatch_qrynum=%d\t%lu\t%lu\n", disf_sz, 2024-05-22T10:51:40,962 | ~~^ 2024-05-22T10:51:40,962 | | 2024-05-22T10:51:40,962 | long unsigned int 2024-05-22T10:51:40,963 | %u 2024-05-22T10:51:40,963 865 | mco_dstat_readin.infile_num, co_dstat_readin.infile_num, num_mapping_distf, bnum_infile, maplength, 2024-05-22T10:51:40,963 866 | (size_t) b * unitsz_distf_mapped); 2024-05-22T10:51:40,963 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-05-22T10:51:40,963 | | 2024-05-22T10:51:40,963 | unsigned int 2024-05-22T10:51:40,964 command_dist.c:811:13: warning: unused variable ‘fco_pos’ [-Wunused-variable] 2024-05-22T10:51:40,964 811 | size_t *fco_pos = malloc(sizeof(size_t) * (co_dstat_readin.infile_num + 1)); 2024-05-22T10:51:40,964 | ^~~~~~~ 2024-05-22T10:51:40,964 command_dist.c:810:17: warning: unused variable ‘cbd_fcode_stat’ [-Wunused-variable] 2024-05-22T10:51:40,965 810 | struct stat cbd_fcode_stat; 2024-05-22T10:51:40,965 | ^~~~~~~~~~~~~~ 2024-05-22T10:51:40,965 command_dist.c:809:31: warning: unused variable ‘cbd_fcode_comp_index_fp’ [-Wunused-variable] 2024-05-22T10:51:40,965 809 | FILE *cbd_fcode_comp_fp, *cbd_fcode_comp_index_fp; 2024-05-22T10:51:40,965 | ^~~~~~~~~~~~~~~~~~~~~~~ 2024-05-22T10:51:40,966 command_dist.c:809:11: warning: unused variable ‘cbd_fcode_comp_fp’ [-Wunused-variable] 2024-05-22T10:51:40,966 809 | FILE *cbd_fcode_comp_fp, *cbd_fcode_comp_index_fp; 2024-05-22T10:51:40,966 | ^~~~~~~~~~~~~~~~~ 2024-05-22T10:51:40,971 command_dist.c: In function ‘mco_cbd_koc_compatible_dist’: 2024-05-22T10:51:40,973 command_dist.c:1019:27: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 2024-05-22T10:51:40,973 1019 | printf("disf_sz=%lu\trefnum=%d\tqrynum=%d\tnum_mapping_distf=%dbnum_infile=%d\t\t%lu\t%lu\tflag1:Ok\n", 2024-05-22T10:51:40,973 | ~~^ 2024-05-22T10:51:40,973 | | 2024-05-22T10:51:40,973 | long unsigned int 2024-05-22T10:51:40,973 | %u 2024-05-22T10:51:40,973 1020 | disf_sz, mco_dstat_readin.infile_num, co_dstat_readin.infile_num, num_mapping_distf, bnum_infile, 2024-05-22T10:51:40,973 | ~~~~~~~ 2024-05-22T10:51:40,974 | | 2024-05-22T10:51:40,974 | size_t {aka unsigned int} 2024-05-22T10:51:40,974 command_dist.c:1019:92: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 7 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 2024-05-22T10:51:40,974 1019 | printf("disf_sz=%lu\trefnum=%d\tqrynum=%d\tnum_mapping_distf=%dbnum_infile=%d\t\t%lu\t%lu\tflag1:Ok\n", 2024-05-22T10:51:40,975 | ~~^ 2024-05-22T10:51:40,975 | | 2024-05-22T10:51:40,975 | long unsigned int 2024-05-22T10:51:40,975 | %u 2024-05-22T10:51:40,975 1020 | disf_sz, mco_dstat_readin.infile_num, co_dstat_readin.infile_num, num_mapping_distf, bnum_infile, 2024-05-22T10:51:40,975 1021 | maplength, (size_t) b * unitsz_distf_mapped); 2024-05-22T10:51:40,975 | ~~~~~~~~~ 2024-05-22T10:51:40,975 | | 2024-05-22T10:51:40,976 | size_t {aka unsigned int} 2024-05-22T10:51:40,976 command_dist.c:1019:97: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 8 has type ‘unsigned int’ [-Wformat=] 2024-05-22T10:51:40,976 1019 | printf("disf_sz=%lu\trefnum=%d\tqrynum=%d\tnum_mapping_distf=%dbnum_infile=%d\t\t%lu\t%lu\tflag1:Ok\n", 2024-05-22T10:51:40,976 | ~~^ 2024-05-22T10:51:40,977 | | 2024-05-22T10:51:40,977 | long unsigned int 2024-05-22T10:51:40,977 | %u 2024-05-22T10:51:40,977 1020 | disf_sz, mco_dstat_readin.infile_num, co_dstat_readin.infile_num, num_mapping_distf, bnum_infile, 2024-05-22T10:51:40,977 1021 | maplength, (size_t) b * unitsz_distf_mapped); 2024-05-22T10:51:40,977 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-05-22T10:51:40,977 | | 2024-05-22T10:51:40,977 | unsigned int 2024-05-22T10:51:40,978 command_dist.c:1035:27: warning: comparison of integer expressions of different signedness: ‘__off_t’ {aka ‘long int’} and ‘unsigned int’ [-Wsign-compare] 2024-05-22T10:51:40,978 1035 | if (s.st_size > sizeof(gidobj_t) * MCOMM_SZ) mco_mem = (gidobj_t *) realloc(mco_mem, s.st_size); 2024-05-22T10:51:40,978 | ^ 2024-05-22T10:51:40,981 command_dist.c: In function ‘mco_co_dist_core’: 2024-05-22T10:51:40,982 command_dist.c:1117:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘gidobj_t’ {aka ‘unsigned int’} [-Wsign-compare] 2024-05-22T10:51:40,982 1117 | for (int k = 1; k < unit_arrmco[ind][0] + 1; k++) { 2024-05-22T10:51:40,982 | ^ 2024-05-22T10:51:40,987 command_dist.c: In function ‘koc_dist_print_nobin’: 2024-05-22T10:51:40,988 command_dist.c:1240:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2024-05-22T10:51:40,988 1240 | for (int rid = 0; rid < ref_num; rid++) 2024-05-22T10:51:40,988 | ^ 2024-05-22T10:51:40,990 command_dist.c:1246:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2024-05-22T10:51:40,990 1246 | for (int rid = 0; rid < ref_num; rid++) { 2024-05-22T10:51:40,990 | ^ 2024-05-22T10:51:40,995 command_dist.c: In function ‘dist_print_nobin’: 2024-05-22T10:51:40,996 command_dist.c:1336:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2024-05-22T10:51:40,996 1336 | if ((N_max > NREF) || (N_max > ref_num)) { 2024-05-22T10:51:40,996 | ^ 2024-05-22T10:51:40,998 command_dist.c:1357:39: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2024-05-22T10:51:40,998 1357 | for (int rid = 0; rid < ref_num; rid++) { 2024-05-22T10:51:40,998 | ^ 2024-05-22T10:51:40,999 command_dist.c:1381:39: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2024-05-22T10:51:41,000 1381 | for (int rid = 0; rid < ref_num; rid++) 2024-05-22T10:51:41,000 | ^ 2024-05-22T10:51:41,000 command_dist.c:1383:39: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2024-05-22T10:51:41,000 1383 | for (int rid = 0; rid < ref_num; rid++) 2024-05-22T10:51:41,001 | ^ 2024-05-22T10:51:41,252 command_dist.c: In function ‘run_stageI._omp_fn.1’: 2024-05-22T10:51:41,252 command_dist.c:404:21: warning: ‘com_abund_fp’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2024-05-22T10:51:41,252 404 | fwrite(tmp_mem, sizeof(unsigned short) * tmpkmerct, 1, com_abund_fp); 2024-05-22T10:51:41,252 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-05-22T10:51:41,252 command_dist.c:376:40: note: ‘com_abund_fp’ was declared here 2024-05-22T10:51:41,252 376 | FILE *com_cofp, *indexfp, *com_abund_fp; 2024-05-22T10:51:41,253 | ^~~~~~~~~~~~ 2024-05-22T10:51:41,973 command_dist.c: In function ‘get_dim_shuffle’: 2024-05-22T10:51:41,974 command_dist.c:268:36: warning: ‘%s’ directive writing up to 264 bytes into a region of size 256 [-Wformat-overflow=] 2024-05-22T10:51:41,974 268 | sprintf(shuf_infile_name, "%s.shuf", shuf_infile_name_prefix); 2024-05-22T10:51:41,974 | ^~ ~~~~~~~~~~~~~~~~~~~~~~~ 2024-05-22T10:51:41,974 command_dist.c:268:9: note: ‘sprintf’ output between 6 and 270 bytes into a destination of size 256 2024-05-22T10:51:41,974 268 | sprintf(shuf_infile_name, "%s.shuf", shuf_infile_name_prefix); 2024-05-22T10:51:41,975 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-05-22T10:51:42,755 command_dist.c: In function ‘mco_cbd_co_dist’: 2024-05-22T10:51:42,756 command_dist.c:597:37: warning: ‘%s’ directive writing 13 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2024-05-22T10:51:42,756 597 | sprintf(refmco_dstat_fpath, "%s/%s", refmco_dname, mco_dstat); 2024-05-22T10:51:42,756 | ^~ ~~~~~~~~~ 2024-05-22T10:51:42,756 command_dist.c:597:5: note: ‘sprintf’ output between 15 and 270 bytes into a destination of size 256 2024-05-22T10:51:42,756 597 | sprintf(refmco_dstat_fpath, "%s/%s", refmco_dname, mco_dstat); 2024-05-22T10:51:42,757 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-05-22T10:51:42,757 command_dist.c:626:25: warning: ‘/sharedk_ct.dat’ directive writing 15 bytes into a region of size between 1 and 256 [-Wformat-overflow=] 2024-05-22T10:51:42,757 626 | sprintf(onedist, "%s/sharedk_ct.dat", distout_dir); 2024-05-22T10:51:42,757 | ^~~~~~~~~~~~~~~ 2024-05-22T10:51:42,757 command_dist.c:626:5: note: ‘sprintf’ output between 16 and 271 bytes into a destination of size 256 2024-05-22T10:51:42,758 626 | sprintf(onedist, "%s/sharedk_ct.dat", distout_dir); 2024-05-22T10:51:42,758 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-05-22T10:51:42,759 command_dist.c:682:41: warning: ‘/mco.index.’ directive writing 11 bytes into a region of size between 1 and 256 [-Wformat-overflow=] 2024-05-22T10:51:42,759 682 | sprintf(mco_index_fcode, "%s/mco.index.%d", refmco_dname, j); 2024-05-22T10:51:42,759 | ^~~~~~~~~~~ 2024-05-22T10:51:42,759 command_dist.c:682:13: note: ‘sprintf’ output between 13 and 278 bytes into a destination of size 256 2024-05-22T10:51:42,759 682 | sprintf(mco_index_fcode, "%s/mco.index.%d", refmco_dname, j); 2024-05-22T10:51:42,759 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-05-22T10:51:42,760 command_dist.c:683:35: warning: ‘/mco.’ directive writing 5 bytes into a region of size between 1 and 256 [-Wformat-overflow=] 2024-05-22T10:51:42,760 683 | sprintf(mco_fcode, "%s/mco.%d", refmco_dname, j); 2024-05-22T10:51:42,760 | ^~~~~ 2024-05-22T10:51:42,760 command_dist.c:683:13: note: ‘sprintf’ output between 7 and 272 bytes into a destination of size 256 2024-05-22T10:51:42,760 683 | sprintf(mco_fcode, "%s/mco.%d", refmco_dname, j); 2024-05-22T10:51:42,760 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-05-22T10:51:42,967 command_dist.c: In function ‘mco_cbdco_nobin_dist’: 2024-05-22T10:51:42,968 command_dist.c:764:37: warning: ‘%s’ directive writing 13 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2024-05-22T10:51:42,968 764 | sprintf(refmco_dstat_fpath, "%s/%s", refmco_dname, mco_dstat); 2024-05-22T10:51:42,968 | ^~ ~~~~~~~~~ 2024-05-22T10:51:42,968 command_dist.c:764:5: note: ‘sprintf’ output between 15 and 270 bytes into a destination of size 256 2024-05-22T10:51:42,968 764 | sprintf(refmco_dstat_fpath, "%s/%s", refmco_dname, mco_dstat); 2024-05-22T10:51:42,968 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-05-22T10:51:42,969 command_dist.c:791:25: warning: ‘/sharedk_ct.dat’ directive writing 15 bytes into a region of size between 1 and 256 [-Wformat-overflow=] 2024-05-22T10:51:42,969 791 | sprintf(onedist, "%s/sharedk_ct.dat", distout_dir); 2024-05-22T10:51:42,969 | ^~~~~~~~~~~~~~~ 2024-05-22T10:51:42,969 command_dist.c:791:5: note: ‘sprintf’ output between 16 and 271 bytes into a destination of size 256 2024-05-22T10:51:42,970 791 | sprintf(onedist, "%s/sharedk_ct.dat", distout_dir); 2024-05-22T10:51:42,970 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-05-22T10:51:42,970 command_dist.c:824:23: warning: ‘/distance.out’ directive writing 13 bytes into a region of size between 1 and 256 [-Wformat-overflow=] 2024-05-22T10:51:42,970 824 | sprintf(distf, "%s/distance.out", distout_dir); 2024-05-22T10:51:42,970 | ^~~~~~~~~~~~~ 2024-05-22T10:51:42,971 command_dist.c:824:5: note: ‘sprintf’ output between 14 and 269 bytes into a destination of size 256 2024-05-22T10:51:42,971 824 | sprintf(distf, "%s/distance.out", distout_dir); 2024-05-22T10:51:42,971 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-05-22T10:51:42,972 command_dist.c:850:39: warning: ‘.’ directive writing 1 byte into a region of size between 0 and 255 [-Wformat-overflow=] 2024-05-22T10:51:42,972 850 | sprintf(mco_index_fcode, "%s/%s.%d", refmco_dname, mco_idx_prefix, j); 2024-05-22T10:51:42,972 | ^ 2024-05-22T10:51:42,972 command_dist.c:850:33: note: directive argument in the range [0, 536870912] 2024-05-22T10:51:42,972 850 | sprintf(mco_index_fcode, "%s/%s.%d", refmco_dname, mco_idx_prefix, j); 2024-05-22T10:51:42,973 | ^~~~~~~~~~ 2024-05-22T10:51:42,973 command_dist.c:850:8: note: ‘sprintf’ output 4 or more bytes (assuming 267) into a destination of size 256 2024-05-22T10:51:42,973 850 | sprintf(mco_index_fcode, "%s/%s.%d", refmco_dname, mco_idx_prefix, j); 2024-05-22T10:51:42,973 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-05-22T10:51:42,974 command_dist.c:852:34: warning: ‘.’ directive writing 1 byte into a region of size between 0 and 255 [-Wformat-overflow=] 2024-05-22T10:51:42,974 852 | sprintf(mco_fcode, "%s/%s.%d", refmco_dname, mco_gids_prefix, j); 2024-05-22T10:51:42,974 | ^ 2024-05-22T10:51:42,974 command_dist.c:852:28: note: directive argument in the range [0, 536870912] 2024-05-22T10:51:42,974 852 | sprintf(mco_fcode, "%s/%s.%d", refmco_dname, mco_gids_prefix, j); 2024-05-22T10:51:42,974 | ^~~~~~~~~~ 2024-05-22T10:51:42,975 command_dist.c:852:9: note: ‘sprintf’ output 4 or more bytes (assuming 267) into a destination of size 256 2024-05-22T10:51:42,975 852 | sprintf(mco_fcode, "%s/%s.%d", refmco_dname, mco_gids_prefix, j); 2024-05-22T10:51:42,975 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-05-22T10:51:43,213 command_dist.c: In function ‘mco_cbd_koc_compatible_dist’: 2024-05-22T10:51:43,213 command_dist.c:928:37: warning: ‘%s’ directive writing 13 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2024-05-22T10:51:43,214 928 | sprintf(refmco_dstat_fpath, "%s/%s", refmco_dname, mco_dstat); 2024-05-22T10:51:43,214 | ^~ ~~~~~~~~~ 2024-05-22T10:51:43,214 command_dist.c:928:5: note: ‘sprintf’ output between 15 and 270 bytes into a destination of size 256 2024-05-22T10:51:43,214 928 | sprintf(refmco_dstat_fpath, "%s/%s", refmco_dname, mco_dstat); 2024-05-22T10:51:43,214 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-05-22T10:51:43,215 command_dist.c:957:25: warning: ‘/sharedk_ct.dat’ directive writing 15 bytes into a region of size between 1 and 256 [-Wformat-overflow=] 2024-05-22T10:51:43,215 957 | sprintf(onedist, "%s/sharedk_ct.dat", distout_dir); 2024-05-22T10:51:43,215 | ^~~~~~~~~~~~~~~ 2024-05-22T10:51:43,216 command_dist.c:957:5: note: ‘sprintf’ output between 16 and 271 bytes into a destination of size 256 2024-05-22T10:51:43,216 957 | sprintf(onedist, "%s/sharedk_ct.dat", distout_dir); 2024-05-22T10:51:43,216 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-05-22T10:51:43,217 command_dist.c:991:23: warning: ‘/distance.out’ directive writing 13 bytes into a region of size between 1 and 256 [-Wformat-overflow=] 2024-05-22T10:51:43,217 991 | sprintf(distf, "%s/distance.out", distout_dir); 2024-05-22T10:51:43,217 | ^~~~~~~~~~~~~ 2024-05-22T10:51:43,217 command_dist.c:991:5: note: ‘sprintf’ output between 14 and 269 bytes into a destination of size 256 2024-05-22T10:51:43,217 991 | sprintf(distf, "%s/distance.out", distout_dir); 2024-05-22T10:51:43,218 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-05-22T10:51:43,219 command_dist.c:1023:41: warning: ‘/mco.index.’ directive writing 11 bytes into a region of size between 1 and 256 [-Wformat-overflow=] 2024-05-22T10:51:43,219 1023 | sprintf(mco_index_fcode, "%s/mco.index.%d", refmco_dname, j); 2024-05-22T10:51:43,219 | ^~~~~~~~~~~ 2024-05-22T10:51:43,219 command_dist.c:1023:13: note: ‘sprintf’ output between 13 and 278 bytes into a destination of size 256 2024-05-22T10:51:43,219 1023 | sprintf(mco_index_fcode, "%s/mco.index.%d", refmco_dname, j); 2024-05-22T10:51:43,220 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-05-22T10:51:43,220 command_dist.c:1024:35: warning: ‘/mco.’ directive writing 5 bytes into a region of size between 1 and 256 [-Wformat-overflow=] 2024-05-22T10:51:43,220 1024 | sprintf(mco_fcode, "%s/mco.%d", refmco_dname, j); 2024-05-22T10:51:43,220 | ^~~~~ 2024-05-22T10:51:43,221 command_dist.c:1024:13: note: ‘sprintf’ output between 7 and 272 bytes into a destination of size 256 2024-05-22T10:51:43,221 1024 | sprintf(mco_fcode, "%s/mco.%d", refmco_dname, j); 2024-05-22T10:51:43,221 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-05-22T10:51:43,467 command_dist.c: In function ‘combine_queries’: 2024-05-22T10:51:43,468 command_dist.c:1493:41: warning: ‘sprintf’ may write a terminating nul past the end of the destination [-Wformat-overflow=] 2024-05-22T10:51:43,469 1493 | sprintf(one_kmerct_list_name, "%s/%s", co_dir, kmerct_list_fname); 2024-05-22T10:51:43,469 | ^ 2024-05-22T10:51:43,469 command_dist.c:1493:5: note: ‘sprintf’ output 2 or more bytes (assuming 257) into a destination of size 256 2024-05-22T10:51:43,470 1493 | sprintf(one_kmerct_list_name, "%s/%s", co_dir, kmerct_list_fname); 2024-05-22T10:51:43,470 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-05-22T10:51:43,471 command_dist.c:1500:40: warning: ‘sprintf’ may write a terminating nul past the end of the destination [-Wformat-overflow=] 2024-05-22T10:51:43,471 1500 | sprintf(one_infilename_name, "%s/%s", co_dir, fname_fname); 2024-05-22T10:51:43,471 | ^ 2024-05-22T10:51:43,472 command_dist.c:1500:5: note: ‘sprintf’ output 2 or more bytes (assuming 257) into a destination of size 256 2024-05-22T10:51:43,472 1500 | sprintf(one_infilename_name, "%s/%s", co_dir, fname_fname); 2024-05-22T10:51:43,472 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-05-22T10:51:43,474 command_dist.c:1604:32: warning: ‘%s’ directive writing 12 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2024-05-22T10:51:43,474 1604 | sprintf(one_stat_name, "%s/%s", co_dir, co_dstat); 2024-05-22T10:51:43,474 | ^~ ~~~~~~~~ 2024-05-22T10:51:43,475 command_dist.c:1604:5: note: ‘sprintf’ output between 14 and 269 bytes into a destination of size 256 2024-05-22T10:51:43,475 1604 | sprintf(one_stat_name, "%s/%s", co_dir, co_dstat); 2024-05-22T10:51:43,475 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-05-22T10:51:44,008 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ikssdheaders -I/usr/include/python3.9 -c command_dist_wrapper.c -o build/temp.linux-armv7l-cpython-39/command_dist_wrapper.o -fopenmp 2024-05-22T10:51:44,179 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ikssdheaders -I/usr/include/python3.9 -c command_set.c -o build/temp.linux-armv7l-cpython-39/command_set.o -fopenmp 2024-05-22T10:51:44,324 command_set.c: In function ‘sketch_operate’: 2024-05-22T10:51:44,325 command_set.c:179:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2024-05-22T10:51:44,325 179 | for(int n = 0; n < fco_pos[i+1] - fco_pos[i]; n++){ 2024-05-22T10:51:44,325 | ^ 2024-05-22T10:51:44,336 command_set.c: In function ‘combin_subset_pans’: 2024-05-22T10:51:44,336 command_set.c:458:10: warning: passing argument 1 of ‘free’ discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers] 2024-05-22T10:51:44,337 458 | free(co_dstat_fpath); 2024-05-22T10:51:44,337 | ^~~~~~~~~~~~~~ 2024-05-22T10:51:44,337 In file included from kssdheaders/global_basic.h:159, 2024-05-22T10:51:44,337 from command_set.c:15: 2024-05-22T10:51:44,337 /usr/include/stdlib.h:565:25: note: expected ‘void *’ but argument is of type ‘const char *’ 2024-05-22T10:51:44,337 565 | extern void free (void *__ptr) __THROW; 2024-05-22T10:51:44,338 | ~~~~~~^~~~~ 2024-05-22T10:51:44,342 command_set.c: In function ‘grouping_genomes’: 2024-05-22T10:51:44,342 command_set.c:563:10: warning: passing argument 1 of ‘free’ discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers] 2024-05-22T10:51:44,342 563 | free(co_dstat_fpath); 2024-05-22T10:51:44,342 | ^~~~~~~~~~~~~~ 2024-05-22T10:51:44,342 In file included from kssdheaders/global_basic.h:159, 2024-05-22T10:51:44,342 from command_set.c:15: 2024-05-22T10:51:44,343 /usr/include/stdlib.h:565:25: note: expected ‘void *’ but argument is of type ‘const char *’ 2024-05-22T10:51:44,343 565 | extern void free (void *__ptr) __THROW; 2024-05-22T10:51:44,343 | ~~~~~~^~~~~ 2024-05-22T10:51:44,460 command_set.c: In function ‘sketch_union’: 2024-05-22T10:51:44,460 command_set.c:72:27: warning: ‘sprintf’ may write a terminating nul past the end of the destination [-Wformat-overflow=] 2024-05-22T10:51:44,460 72 | sprintf(outpath,"%s/%s",set_opt.outdir,co_dstat); 2024-05-22T10:51:44,460 | ^ 2024-05-22T10:51:44,460 command_set.c:72:5: note: ‘sprintf’ output 2 or more bytes (assuming 257) into a destination of size 256 2024-05-22T10:51:44,461 72 | sprintf(outpath,"%s/%s",set_opt.outdir,co_dstat); 2024-05-22T10:51:44,461 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-05-22T10:51:44,461 command_set.c:83:29: warning: ‘%s’ directive writing 6 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2024-05-22T10:51:44,461 83 | sprintf(outpath,"%s/%s.%d",set_opt.insketchpath,skch_prefix,i); 2024-05-22T10:51:44,461 | ^~ ~~~~~~~~~~~ 2024-05-22T10:51:44,461 command_set.c:83:9: note: ‘sprintf’ output between 10 and 275 bytes into a destination of size 256 2024-05-22T10:51:44,461 83 | sprintf(outpath,"%s/%s.%d",set_opt.insketchpath,skch_prefix,i); 2024-05-22T10:51:44,462 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-05-22T10:51:44,462 command_set.c:93:29: warning: ‘%s’ directive writing 3 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2024-05-22T10:51:44,462 93 | sprintf(outpath,"%s/%s.%d",set_opt.outdir,pan_prefix,i); 2024-05-22T10:51:44,462 | ^~ ~~~~~~~~~~ 2024-05-22T10:51:44,462 command_set.c:93:9: note: ‘sprintf’ output between 7 and 272 bytes into a destination of size 256 2024-05-22T10:51:44,462 93 | sprintf(outpath,"%s/%s.%d",set_opt.outdir,pan_prefix,i); 2024-05-22T10:51:44,462 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-05-22T10:51:44,573 command_set.c: In function ‘sketch_operate’: 2024-05-22T10:51:44,573 command_set.c:154:29: warning: ‘%s’ directive writing 3 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2024-05-22T10:51:44,574 154 | sprintf(tmppath,"%s/%s.%d",set_opt.pansketchpath, pan_prefix, c); 2024-05-22T10:51:44,574 | ^~ ~~~~~~~~~~ 2024-05-22T10:51:44,574 command_set.c:154:9: note: ‘sprintf’ output between 7 and 272 bytes into a destination of size 256 2024-05-22T10:51:44,574 154 | sprintf(tmppath,"%s/%s.%d",set_opt.pansketchpath, pan_prefix, c); 2024-05-22T10:51:44,574 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-05-22T10:51:44,574 command_set.c:156:33: warning: ‘%s’ directive writing 8 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2024-05-22T10:51:44,574 156 | sprintf(tmppath,"%s/%s.%d",set_opt.pansketchpath, uniq_pan_prefix, c); 2024-05-22T10:51:44,575 | ^~ ~~~~~~~~~~~~~~~ 2024-05-22T10:51:44,575 command_set.c:156:13: note: ‘sprintf’ output between 12 and 277 bytes into a destination of size 256 2024-05-22T10:51:44,575 156 | sprintf(tmppath,"%s/%s.%d",set_opt.pansketchpath, uniq_pan_prefix, c); 2024-05-22T10:51:44,575 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-05-22T10:51:44,575 command_set.c:166:29: warning: ‘%s’ directive writing 6 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2024-05-22T10:51:44,575 166 | sprintf(tmppath,"%s/%s.index.%d",set_opt.insketchpath,skch_prefix, c); 2024-05-22T10:51:44,575 | ^~ ~~~~~~~~~~~ 2024-05-22T10:51:44,575 command_set.c:166:9: note: ‘sprintf’ output between 16 and 281 bytes into a destination of size 256 2024-05-22T10:51:44,576 166 | sprintf(tmppath,"%s/%s.index.%d",set_opt.insketchpath,skch_prefix, c); 2024-05-22T10:51:44,576 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-05-22T10:51:44,576 command_set.c:170:29: warning: ‘%s’ directive writing 6 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2024-05-22T10:51:44,576 170 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,skch_prefix, c); 2024-05-22T10:51:44,576 | ^~ ~~~~~~~~~~~ 2024-05-22T10:51:44,576 command_set.c:170:9: note: ‘sprintf’ output between 10 and 275 bytes into a destination of size 256 2024-05-22T10:51:44,576 170 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,skch_prefix, c); 2024-05-22T10:51:44,577 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-05-22T10:51:44,577 command_set.c:175:29: warning: ‘%s’ directive writing 6 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2024-05-22T10:51:44,577 175 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,skch_prefix, c); 2024-05-22T10:51:44,577 | ^~ ~~~~~~~~~~~ 2024-05-22T10:51:44,577 command_set.c:175:9: note: ‘sprintf’ output between 10 and 275 bytes into a destination of size 256 2024-05-22T10:51:44,577 175 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,skch_prefix, c); 2024-05-22T10:51:44,577 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-05-22T10:51:44,578 command_set.c:188:29: warning: ‘%s’ directive writing 6 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2024-05-22T10:51:44,578 188 | sprintf(tmppath,"%s/%s.index.%d",set_opt.outdir,skch_prefix, c); 2024-05-22T10:51:44,578 | ^~ ~~~~~~~~~~~ 2024-05-22T10:51:44,578 command_set.c:188:9: note: ‘sprintf’ output between 16 and 281 bytes into a destination of size 256 2024-05-22T10:51:44,578 188 | sprintf(tmppath,"%s/%s.index.%d",set_opt.outdir,skch_prefix, c); 2024-05-22T10:51:44,578 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-05-22T10:51:44,578 command_set.c:193:27: warning: ‘sprintf’ may write a terminating nul past the end of the destination [-Wformat-overflow=] 2024-05-22T10:51:44,578 193 | sprintf(tmppath,"%s/%s",set_opt.outdir,co_dstat); 2024-05-22T10:51:44,579 | ^ 2024-05-22T10:51:44,579 command_set.c:193:5: note: ‘sprintf’ output 2 or more bytes (assuming 257) into a destination of size 256 2024-05-22T10:51:44,579 193 | sprintf(tmppath,"%s/%s",set_opt.outdir,co_dstat); 2024-05-22T10:51:44,579 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-05-22T10:51:44,758 command_set.c: In function ‘uniq_sketch_union’: 2024-05-22T10:51:44,758 command_set.c:235:27: warning: ‘sprintf’ may write a terminating nul past the end of the destination [-Wformat-overflow=] 2024-05-22T10:51:44,759 235 | sprintf(outpath,"%s/%s",set_opt.outdir,co_dstat); 2024-05-22T10:51:44,759 | ^ 2024-05-22T10:51:44,759 command_set.c:235:5: note: ‘sprintf’ output 2 or more bytes (assuming 257) into a destination of size 256 2024-05-22T10:51:44,759 235 | sprintf(outpath,"%s/%s",set_opt.outdir,co_dstat); 2024-05-22T10:51:44,759 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-05-22T10:51:44,759 command_set.c:248:29: warning: ‘%s’ directive writing 6 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2024-05-22T10:51:44,759 248 | sprintf(outpath,"%s/%s.%d",set_opt.insketchpath,skch_prefix,i); 2024-05-22T10:51:44,760 | ^~ ~~~~~~~~~~~ 2024-05-22T10:51:44,760 command_set.c:248:9: note: ‘sprintf’ output between 10 and 275 bytes into a destination of size 256 2024-05-22T10:51:44,760 248 | sprintf(outpath,"%s/%s.%d",set_opt.insketchpath,skch_prefix,i); 2024-05-22T10:51:44,760 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-05-22T10:51:44,760 command_set.c:260:29: warning: ‘%s’ directive writing 8 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2024-05-22T10:51:44,760 260 | sprintf(outpath,"%s/%s.%d",set_opt.outdir,uniq_pan_prefix,i); 2024-05-22T10:51:44,760 | ^~ ~~~~~~~~~~~~~~~ 2024-05-22T10:51:44,760 command_set.c:260:9: note: ‘sprintf’ output between 12 and 277 bytes into a destination of size 256 2024-05-22T10:51:44,761 260 | sprintf(outpath,"%s/%s.%d",set_opt.outdir,uniq_pan_prefix,i); 2024-05-22T10:51:44,761 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-05-22T10:51:44,884 command_set.c: In function ‘combin_pans’: 2024-05-22T10:51:44,885 command_set.c:298:29: warning: ‘%s’ directive writing 6 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2024-05-22T10:51:44,885 298 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,skch_prefix,c); 2024-05-22T10:51:44,885 | ^~ ~~~~~~~~~~~ 2024-05-22T10:51:44,885 command_set.c:298:25: note: directive argument in the range [0, 1073741823] 2024-05-22T10:51:44,885 298 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,skch_prefix,c); 2024-05-22T10:51:44,885 | ^~~~~~~~~~ 2024-05-22T10:51:44,886 command_set.c:298:9: note: ‘sprintf’ output between 10 and 274 bytes into a destination of size 256 2024-05-22T10:51:44,886 298 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,skch_prefix,c); 2024-05-22T10:51:44,886 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-05-22T10:51:44,886 command_set.c:301:29: warning: ‘%s’ directive writing 12 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2024-05-22T10:51:44,886 301 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,idx_prefix,c); 2024-05-22T10:51:44,886 | ^~ ~~~~~~~~~~ 2024-05-22T10:51:44,886 command_set.c:301:25: note: directive argument in the range [0, 1073741823] 2024-05-22T10:51:44,886 301 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,idx_prefix,c); 2024-05-22T10:51:44,887 | ^~~~~~~~~~ 2024-05-22T10:51:44,887 command_set.c:301:9: note: ‘sprintf’ output between 16 and 280 bytes into a destination of size 256 2024-05-22T10:51:44,887 301 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,idx_prefix,c); 2024-05-22T10:51:44,887 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-05-22T10:51:44,887 command_set.c:343:27: warning: ‘sprintf’ may write a terminating nul past the end of the destination [-Wformat-overflow=] 2024-05-22T10:51:44,887 343 | sprintf(tmppath,"%s/%s",set_opt.outdir,co_dstat); 2024-05-22T10:51:44,887 | ^ 2024-05-22T10:51:44,888 command_set.c:343:5: note: ‘sprintf’ output 2 or more bytes (assuming 257) into a destination of size 256 2024-05-22T10:51:44,888 343 | sprintf(tmppath,"%s/%s",set_opt.outdir,co_dstat); 2024-05-22T10:51:44,888 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-05-22T10:51:45,070 command_set.c: In function ‘combin_subset_pans’: 2024-05-22T10:51:45,071 command_set.c:470:29: warning: ‘%s’ directive writing 6 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2024-05-22T10:51:45,071 470 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,skch_prefix,c); 2024-05-22T10:51:45,071 | ^~ ~~~~~~~~~~~ 2024-05-22T10:51:45,071 command_set.c:470:9: note: ‘sprintf’ output between 10 and 275 bytes into a destination of size 256 2024-05-22T10:51:45,071 470 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,skch_prefix,c); 2024-05-22T10:51:45,071 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-05-22T10:51:45,071 command_set.c:476:29: warning: ‘%s’ directive writing 12 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2024-05-22T10:51:45,072 476 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,idx_prefix,c); 2024-05-22T10:51:45,072 | ^~ ~~~~~~~~~~ 2024-05-22T10:51:45,072 command_set.c:476:9: note: ‘sprintf’ output between 16 and 281 bytes into a destination of size 256 2024-05-22T10:51:45,072 476 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,idx_prefix,c); 2024-05-22T10:51:45,072 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-05-22T10:51:45,072 command_set.c:482:29: warning: ‘%s’ directive writing 6 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2024-05-22T10:51:45,072 482 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,skch_prefix,c); 2024-05-22T10:51:45,073 | ^~ ~~~~~~~~~~~ 2024-05-22T10:51:45,073 command_set.c:482:9: note: ‘sprintf’ output between 10 and 275 bytes into a destination of size 256 2024-05-22T10:51:45,073 482 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,skch_prefix,c); 2024-05-22T10:51:45,073 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-05-22T10:51:45,074 command_set.c:513:29: warning: ‘%s’ directive writing 12 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2024-05-22T10:51:45,074 513 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,idx_prefix,c); 2024-05-22T10:51:45,075 | ^~ ~~~~~~~~~~ 2024-05-22T10:51:45,075 command_set.c:513:9: note: ‘sprintf’ output between 16 and 281 bytes into a destination of size 256 2024-05-22T10:51:45,075 513 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,idx_prefix,c); 2024-05-22T10:51:45,075 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-05-22T10:51:45,075 command_set.c:524:27: warning: ‘sprintf’ may write a terminating nul past the end of the destination [-Wformat-overflow=] 2024-05-22T10:51:45,075 524 | sprintf(tmppath,"%s/%s",set_opt.outdir,co_dstat); 2024-05-22T10:51:45,075 | ^ 2024-05-22T10:51:45,076 command_set.c:524:5: note: ‘sprintf’ output 2 or more bytes (assuming 257) into a destination of size 256 2024-05-22T10:51:45,076 524 | sprintf(tmppath,"%s/%s",set_opt.outdir,co_dstat); 2024-05-22T10:51:45,076 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-05-22T10:51:45,278 command_set.c: In function ‘grouping_genomes’: 2024-05-22T10:51:45,279 command_set.c:575:29: warning: ‘%s’ directive writing 6 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2024-05-22T10:51:45,279 575 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,skch_prefix,c); 2024-05-22T10:51:45,279 | ^~ ~~~~~~~~~~~ 2024-05-22T10:51:45,279 command_set.c:575:9: note: ‘sprintf’ output between 10 and 275 bytes into a destination of size 256 2024-05-22T10:51:45,279 575 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,skch_prefix,c); 2024-05-22T10:51:45,279 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-05-22T10:51:45,280 command_set.c:581:29: warning: ‘%s’ directive writing 12 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2024-05-22T10:51:45,280 581 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,idx_prefix,c); 2024-05-22T10:51:45,280 | ^~ ~~~~~~~~~~ 2024-05-22T10:51:45,280 command_set.c:581:9: note: ‘sprintf’ output between 16 and 281 bytes into a destination of size 256 2024-05-22T10:51:45,280 581 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,idx_prefix,c); 2024-05-22T10:51:45,280 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-05-22T10:51:45,282 command_set.c:613:29: warning: ‘%s’ directive writing 6 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2024-05-22T10:51:45,282 613 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,skch_prefix,c); 2024-05-22T10:51:45,282 | ^~ ~~~~~~~~~~~ 2024-05-22T10:51:45,282 command_set.c:613:9: note: ‘sprintf’ output between 10 and 275 bytes into a destination of size 256 2024-05-22T10:51:45,282 613 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,skch_prefix,c); 2024-05-22T10:51:45,283 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-05-22T10:51:45,283 command_set.c:635:29: warning: ‘%s’ directive writing 12 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2024-05-22T10:51:45,283 635 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,idx_prefix,c); 2024-05-22T10:51:45,283 | ^~ ~~~~~~~~~~ 2024-05-22T10:51:45,284 command_set.c:635:9: note: ‘sprintf’ output between 16 and 281 bytes into a destination of size 256 2024-05-22T10:51:45,284 635 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,idx_prefix,c); 2024-05-22T10:51:45,284 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-05-22T10:51:45,284 command_set.c:646:27: warning: ‘sprintf’ may write a terminating nul past the end of the destination [-Wformat-overflow=] 2024-05-22T10:51:45,284 646 | sprintf(tmppath,"%s/%s",set_opt.outdir,co_dstat); 2024-05-22T10:51:45,284 | ^ 2024-05-22T10:51:45,285 command_set.c:646:5: note: ‘sprintf’ output 2 or more bytes (assuming 257) into a destination of size 256 2024-05-22T10:51:45,285 646 | sprintf(tmppath,"%s/%s",set_opt.outdir,co_dstat); 2024-05-22T10:51:45,285 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-05-22T10:51:45,557 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ikssdheaders -I/usr/include/python3.9 -c command_shuffle.c -o build/temp.linux-armv7l-cpython-39/command_shuffle.o -fopenmp 2024-05-22T10:51:45,838 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ikssdheaders -I/usr/include/python3.9 -c global_basic.c -o build/temp.linux-armv7l-cpython-39/global_basic.o -fopenmp 2024-05-22T10:51:45,984 global_basic.c: In function ‘organize_infile_list’: 2024-05-22T10:51:45,984 global_basic.c:195:20: warning: implicit declaration of function ‘isspace’ [-Wimplicit-function-declaration] 2024-05-22T10:51:45,984 195 | while (isspace(*buf)) buf++; 2024-05-22T10:51:45,984 | ^~~~~~~ 2024-05-22T10:51:45,985 global_basic.c:201:69: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 6 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 2024-05-22T10:51:45,986 201 | "the input list: %s\n %dth line: %s has %lu characters exceed the maximal allowed length %d", 2024-05-22T10:51:45,986 | ~~^ 2024-05-22T10:51:45,986 | | 2024-05-22T10:51:45,986 | long unsigned int 2024-05-22T10:51:45,986 | %u 2024-05-22T10:51:45,986 202 | list_path, file_num, buf, strlen(buf), PATHLEN); 2024-05-22T10:51:45,986 | ~~~~~~~~~~~ 2024-05-22T10:51:45,986 | | 2024-05-22T10:51:45,987 | size_t {aka unsigned int} 2024-05-22T10:51:45,988 global_basic.c:233:69: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 6 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 2024-05-22T10:51:45,988 233 | "the input list: %s\n %dth line: %s has %lu characters exceed the maximal allowed length %d", 2024-05-22T10:51:45,988 | ~~^ 2024-05-22T10:51:45,988 | | 2024-05-22T10:51:45,989 | long unsigned int 2024-05-22T10:51:45,989 | %u 2024-05-22T10:51:45,989 234 | list_path, file_num, buf, strlen(buf), PATHLEN); 2024-05-22T10:51:45,989 | ~~~~~~~~~~~ 2024-05-22T10:51:45,989 | | 2024-05-22T10:51:45,989 | size_t {aka unsigned int} 2024-05-22T10:51:46,693 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ikssdheaders -I/usr/include/python3.9 -c iseq2comem.c -o build/temp.linux-armv7l-cpython-39/iseq2comem.o -fopenmp 2024-05-22T10:51:46,849 iseq2comem.c: In function ‘reads2mco’: 2024-05-22T10:51:46,849 iseq2comem.c:156:18: warning: comparison of integer expressions of different signedness: ‘llong’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare] 2024-05-22T10:51:46,849 156 | if (base > TL) { 2024-05-22T10:51:46,850 | ^ 2024-05-22T10:51:46,850 iseq2comem.c:160:26: warning: comparison of integer expressions of different signedness: ‘llong’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare] 2024-05-22T10:51:46,850 160 | if ((pfilter >= dim_end) || (pfilter < dim_start)) continue; 2024-05-22T10:51:46,850 | ^~ 2024-05-22T10:51:46,851 iseq2comem.c:160:50: warning: comparison of integer expressions of different signedness: ‘llong’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare] 2024-05-22T10:51:46,851 160 | if ((pfilter >= dim_end) || (pfilter < dim_start)) continue; 2024-05-22T10:51:46,851 | ^ 2024-05-22T10:51:46,853 iseq2comem.c: In function ‘fasta2co’: 2024-05-22T10:51:46,853 iseq2comem.c:239:18: warning: comparison of integer expressions of different signedness: ‘llong’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare] 2024-05-22T10:51:46,854 239 | if (base > TL) { 2024-05-22T10:51:46,854 | ^ 2024-05-22T10:51:46,854 iseq2comem.c:243:26: warning: comparison of integer expressions of different signedness: ‘llong’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare] 2024-05-22T10:51:46,854 243 | if ((pfilter >= dim_end) || (pfilter < dim_start)) continue; 2024-05-22T10:51:46,855 | ^~ 2024-05-22T10:51:46,855 iseq2comem.c:243:50: warning: comparison of integer expressions of different signedness: ‘llong’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare] 2024-05-22T10:51:46,855 243 | if ((pfilter >= dim_end) || (pfilter < dim_start)) continue; 2024-05-22T10:51:46,855 | ^ 2024-05-22T10:51:46,856 iseq2comem.c: In function ‘fastq2co’: 2024-05-22T10:51:46,857 iseq2comem.c:272:11: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long long unsigned int’ [-Wsign-compare] 2024-05-22T10:51:46,857 272 | if (M >= CT_MAX) fprintf(stderr, "fastq2co(): Occurence num should smaller than %d", (int) CT_MAX); 2024-05-22T10:51:46,857 | ^~ 2024-05-22T10:51:46,858 iseq2comem.c:318:18: warning: comparison of integer expressions of different signedness: ‘llong’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare] 2024-05-22T10:51:46,859 318 | if (base > TL) { 2024-05-22T10:51:46,859 | ^ 2024-05-22T10:51:46,859 iseq2comem.c:322:26: warning: comparison of integer expressions of different signedness: ‘llong’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare] 2024-05-22T10:51:46,860 322 | if ((pfilter >= dim_end) || (pfilter < dim_start)) continue; 2024-05-22T10:51:46,860 | ^~ 2024-05-22T10:51:46,860 iseq2comem.c:322:50: warning: comparison of integer expressions of different signedness: ‘llong’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare] 2024-05-22T10:51:46,860 322 | if ((pfilter >= dim_end) || (pfilter < dim_start)) continue; 2024-05-22T10:51:46,860 | ^ 2024-05-22T10:51:46,862 iseq2comem.c:341:44: warning: comparison of integer expressions of different signedness: ‘long long unsigned int’ and ‘int’ [-Wsign-compare] 2024-05-22T10:51:46,862 341 | if (!((co[n] & CT_MAX) < M)) co[n] |= CT_MAX; 2024-05-22T10:51:46,862 | ^ 2024-05-22T10:51:46,864 iseq2comem.c: In function ‘fastq2koc’: 2024-05-22T10:51:46,864 iseq2comem.c:402:18: warning: comparison of integer expressions of different signedness: ‘llong’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare] 2024-05-22T10:51:46,864 402 | if (base > TL) { 2024-05-22T10:51:46,864 | ^ 2024-05-22T10:51:46,865 iseq2comem.c:406:26: warning: comparison of integer expressions of different signedness: ‘llong’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare] 2024-05-22T10:51:46,865 406 | if ((pfilter >= dim_end) || (pfilter < dim_start)) continue; 2024-05-22T10:51:46,865 | ^~ 2024-05-22T10:51:46,866 iseq2comem.c:406:50: warning: comparison of integer expressions of different signedness: ‘llong’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare] 2024-05-22T10:51:46,866 406 | if ((pfilter >= dim_end) || (pfilter < dim_start)) continue; 2024-05-22T10:51:46,866 | ^ 2024-05-22T10:51:46,872 iseq2comem.c: In function ‘mt_shortreads2koc’: 2024-05-22T10:51:46,872 iseq2comem.c:582:34: warning: comparison of integer expressions of different signedness: ‘llong’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare] 2024-05-22T10:51:46,872 582 | if ((pfilter >= dim_end) || (pfilter < dim_start)) continue; 2024-05-22T10:51:46,873 | ^~ 2024-05-22T10:51:46,873 iseq2comem.c:582:58: warning: comparison of integer expressions of different signedness: ‘llong’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare] 2024-05-22T10:51:46,873 582 | if ((pfilter >= dim_end) || (pfilter < dim_start)) continue; 2024-05-22T10:51:46,873 | ^ 2024-05-22T10:51:48,040 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ikssdheaders -I/usr/include/python3.9 -c mman.c -o build/temp.linux-armv7l-cpython-39/mman.o -fopenmp 2024-05-22T10:51:48,104 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ikssdheaders -I/usr/include/python3.9 -c mytime.c -o build/temp.linux-armv7l-cpython-39/mytime.o -fopenmp 2024-05-22T10:51:48,227 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ikssdheaders -I/usr/include/python3.9 -c pykssd.c -o build/temp.linux-armv7l-cpython-39/pykssd.o -fopenmp 2024-05-22T10:51:48,579 pykssd.c: In function ‘py_dist_dispatch’: 2024-05-22T10:51:48,580 pykssd.c:304:13: warning: unused variable ‘state1’ [-Wunused-variable] 2024-05-22T10:51:48,580 304 | int state1 = dist_dispatch(&dist_opt_val1); 2024-05-22T10:51:48,580 | ^~~~~~ 2024-05-22T10:51:48,580 pykssd.c:361:13: warning: unused variable ‘state2’ [-Wunused-variable] 2024-05-22T10:51:48,580 361 | int state2 = dist_dispatch(&dist_opt_val2); 2024-05-22T10:51:48,580 | ^~~~~~ 2024-05-22T10:51:48,581 pykssd.c:480:13: warning: unused variable ‘state4’ [-Wunused-variable] 2024-05-22T10:51:48,582 480 | int state4 = dist_dispatch(&dist_opt_val4); 2024-05-22T10:51:48,582 | ^~~~~~ 2024-05-22T10:51:48,720 pykssd.c: In function ‘rename_file’: 2024-05-22T10:51:48,720 pykssd.c:44:15: warning: ‘strncpy’ specified bound depends on the length of the source argument [-Wstringop-overflow=] 2024-05-22T10:51:48,720 44 | newfile = strncpy(newfile, p1, len - suffix_len); 2024-05-22T10:51:48,720 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-05-22T10:51:48,720 pykssd.c:41:15: note: length computed here 2024-05-22T10:51:48,721 41 | int len = strlen(p1); 2024-05-22T10:51:48,721 | ^~~~~~~~~~ 2024-05-22T10:51:49,088 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/co2mco.o build/temp.linux-armv7l-cpython-39/command_composite.o build/temp.linux-armv7l-cpython-39/command_dist.o build/temp.linux-armv7l-cpython-39/command_dist_wrapper.o build/temp.linux-armv7l-cpython-39/command_set.o build/temp.linux-armv7l-cpython-39/command_shuffle.o build/temp.linux-armv7l-cpython-39/global_basic.o build/temp.linux-armv7l-cpython-39/iseq2comem.o build/temp.linux-armv7l-cpython-39/mman.o build/temp.linux-armv7l-cpython-39/mytime.o build/temp.linux-armv7l-cpython-39/pykssd.o -L/usr/lib -lz -o build/lib.linux-armv7l-cpython-39/kssd.cpython-39-arm-linux-gnueabihf.so -fopenmp 2024-05-22T10:51:49,261 building 'nj' extension 2024-05-22T10:51:49,262 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Injheaders -I/usr/include/python3.9 -c align.c -o build/temp.linux-armv7l-cpython-39/align.o 2024-05-22T10:51:49,901 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Injheaders -I/usr/include/python3.9 -c buildtree.c -o build/temp.linux-armv7l-cpython-39/buildtree.o 2024-05-22T10:51:50,056 buildtree.c: In function ‘UPGMA_buildtree’: 2024-05-22T10:51:50,057 buildtree.c:716:26: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2024-05-22T10:51:50,057 716 | if (min_of_row_idx[m] == minj || min_of_row_idx[m] == mini) { 2024-05-22T10:51:50,057 | ^~ 2024-05-22T10:51:50,058 buildtree.c:716:55: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2024-05-22T10:51:50,058 716 | if (min_of_row_idx[m] == minj || min_of_row_idx[m] == mini) { 2024-05-22T10:51:50,058 | ^~ 2024-05-22T10:51:50,625 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Injheaders -I/usr/include/python3.9 -c cluster.c -o build/temp.linux-armv7l-cpython-39/cluster.o 2024-05-22T10:51:50,954 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Injheaders -I/usr/include/python3.9 -c distancemat.c -o build/temp.linux-armv7l-cpython-39/distancemat.o 2024-05-22T10:51:51,075 distancemat.c: In function ‘clone_DistanceMatrix’: 2024-05-22T10:51:51,075 distancemat.c:226:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2024-05-22T10:51:51,075 226 | for( i=0; i < dest->size; i++) { 2024-05-22T10:51:51,075 | ^ 2024-05-22T10:51:51,076 distancemat.c: In function ‘empty_DistanceMatrix’: 2024-05-22T10:51:51,076 distancemat.c:260:15: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2024-05-22T10:51:51,076 260 | for( i=0; i < mat->size; i++) { 2024-05-22T10:51:51,076 | ^ 2024-05-22T10:51:51,076 distancemat.c: In function ‘print_DistanceMatrix’: 2024-05-22T10:51:51,076 distancemat.c:349:18: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2024-05-22T10:51:51,076 349 | for(row=0; row < mat->size; row++) { 2024-05-22T10:51:51,077 | ^ 2024-05-22T10:51:51,077 distancemat.c: In function ‘read_phylip_DistanceMatrix’: 2024-05-22T10:51:51,077 distancemat.c:410:11: warning: suggest parentheses around assignment used as truth value [-Wparentheses] 2024-05-22T10:51:51,077 410 | while(c = fgetc(handle)) { 2024-05-22T10:51:51,077 | ^ 2024-05-22T10:51:51,415 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Injheaders -I/usr/include/python3.9 -c pynj.c -o build/temp.linux-armv7l-cpython-39/pynj.o 2024-05-22T10:51:51,796 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Injheaders -I/usr/include/python3.9 -c sequence.c -o build/temp.linux-armv7l-cpython-39/sequence.o 2024-05-22T10:51:51,989 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Injheaders -I/usr/include/python3.9 -c tree.c -o build/temp.linux-armv7l-cpython-39/tree.o 2024-05-22T10:51:52,683 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Injheaders -I/usr/include/python3.9 -c util.c -o build/temp.linux-armv7l-cpython-39/util.o 2024-05-22T10:51:52,857 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/align.o build/temp.linux-armv7l-cpython-39/buildtree.o build/temp.linux-armv7l-cpython-39/cluster.o build/temp.linux-armv7l-cpython-39/distancemat.o build/temp.linux-armv7l-cpython-39/pynj.o build/temp.linux-armv7l-cpython-39/sequence.o build/temp.linux-armv7l-cpython-39/tree.o build/temp.linux-armv7l-cpython-39/util.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/nj.cpython-39-arm-linux-gnueabihf.so 2024-05-22T10:51:52,970 building 'dnj' extension 2024-05-22T10:51:52,971 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Idnjheaders -I/usr/include/python3.9 -c bytescale.c -o build/temp.linux-armv7l-cpython-39/bytescale.o -fopenmp 2024-05-22T10:51:53,037 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Idnjheaders -I/usr/include/python3.9 -c dnj.c -o build/temp.linux-armv7l-cpython-39/dnj.o -fopenmp 2024-05-22T10:51:53,158 dnj.c: In function ‘minQpair’: 2024-05-22T10:51:53,159 dnj.c:70:13: warning: left shift count >= width of type [-Wshift-count-overflow] 2024-05-22T10:51:53,159 70 | pos <<= sizeof(unsigned) * 8; 2024-05-22T10:51:53,159 | ^~~ 2024-05-22T10:51:53,160 dnj.c:126:21: warning: left shift count >= width of type [-Wshift-count-overflow] 2024-05-22T10:51:53,160 126 | pos <<= sizeof(unsigned) * 8; 2024-05-22T10:51:53,160 | ^~~ 2024-05-22T10:51:53,160 dnj.c: In function ‘maxQpair’: 2024-05-22T10:51:53,160 dnj.c:157:13: warning: left shift count >= width of type [-Wshift-count-overflow] 2024-05-22T10:51:53,161 157 | pos <<= sizeof(unsigned) * 8; 2024-05-22T10:51:53,161 | ^~~ 2024-05-22T10:51:53,161 dnj.c:213:21: warning: left shift count >= width of type [-Wshift-count-overflow] 2024-05-22T10:51:53,161 213 | pos <<= sizeof(unsigned) * 8; 2024-05-22T10:51:53,161 | ^~~ 2024-05-22T10:51:53,162 dnj.c: In function ‘UPGMApair’: 2024-05-22T10:51:53,162 dnj.c:237:13: warning: left shift count >= width of type [-Wshift-count-overflow] 2024-05-22T10:51:53,162 237 | pos <<= sizeof(unsigned) * 8; 2024-05-22T10:51:53,162 | ^~~ 2024-05-22T10:51:53,162 dnj.c:284:25: warning: left shift count >= width of type [-Wshift-count-overflow] 2024-05-22T10:51:53,163 284 | pos <<= sizeof(unsigned) * 8; 2024-05-22T10:51:53,163 | ^~~ 2024-05-22T10:51:53,163 dnj.c:291:21: warning: left shift count >= width of type [-Wshift-count-overflow] 2024-05-22T10:51:53,163 291 | pos <<= sizeof(unsigned) * 8; 2024-05-22T10:51:53,163 | ^~~ 2024-05-22T10:51:53,164 dnj.c: In function ‘minQrow’: 2024-05-22T10:51:53,164 dnj.c:374:17: warning: left shift count >= width of type [-Wshift-count-overflow] 2024-05-22T10:51:53,164 374 | pos <<= sizeof(unsigned) * 8; 2024-05-22T10:51:53,165 | ^~~ 2024-05-22T10:51:53,165 dnj.c: In function ‘maxQrow’: 2024-05-22T10:51:53,166 dnj.c:435:17: warning: left shift count >= width of type [-Wshift-count-overflow] 2024-05-22T10:51:53,166 435 | pos <<= sizeof(unsigned) * 8; 2024-05-22T10:51:53,166 | ^~~ 2024-05-22T10:51:53,167 dnj.c: In function ‘UPGMArow’: 2024-05-22T10:51:53,167 dnj.c:488:21: warning: left shift count >= width of type [-Wshift-count-overflow] 2024-05-22T10:51:53,167 488 | pos <<= sizeof(unsigned) * 8; 2024-05-22T10:51:53,167 | ^~~ 2024-05-22T10:51:53,167 dnj.c:494:17: warning: left shift count >= width of type [-Wshift-count-overflow] 2024-05-22T10:51:53,167 494 | pos <<= sizeof(unsigned) * 8; 2024-05-22T10:51:53,168 | ^~~ 2024-05-22T10:51:53,168 dnj.c: In function ‘minQ_thread’: 2024-05-22T10:51:53,169 dnj.c:553:17: warning: left shift count >= width of type [-Wshift-count-overflow] 2024-05-22T10:51:53,169 553 | pos <<= sizeof(unsigned) * 8; 2024-05-22T10:51:53,169 | ^~~ 2024-05-22T10:51:54,335 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Idnjheaders -I/usr/include/python3.9 -c filebuff.c -o build/temp.linux-armv7l-cpython-39/filebuff.o -fopenmp 2024-05-22T10:51:54,442 filebuff.c: In function ‘BuffgzFileBuff’: 2024-05-22T10:51:54,442 filebuff.c:99:47: warning: comparison of integer expressions of different signedness: ‘uInt’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2024-05-22T10:51:54,442 99 | if(status == Z_STREAM_END && strm->avail_out == dest->buffSize) { 2024-05-22T10:51:54,442 | ^~ 2024-05-22T10:51:54,726 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Idnjheaders -I/usr/include/python3.9 -c hclust.c -o build/temp.linux-armv7l-cpython-39/hclust.o -fopenmp 2024-05-22T10:51:54,846 hclust.c: In function ‘minQ’: 2024-05-22T10:51:54,846 hclust.c:364:12: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2024-05-22T10:51:54,846 364 | while(++i < Q->n) { 2024-05-22T10:51:54,846 | ^ 2024-05-22T10:51:54,846 hclust.c:377:6: warning: left shift count >= width of type [-Wshift-count-overflow] 2024-05-22T10:51:54,846 377 | pos <<= sizeof(unsigned) * 8; 2024-05-22T10:51:54,847 | ^~~ 2024-05-22T10:51:54,847 hclust.c: In function ‘maxQ’: 2024-05-22T10:51:54,847 hclust.c:394:12: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2024-05-22T10:51:54,847 394 | while(++i < Q->n) { 2024-05-22T10:51:54,847 | ^ 2024-05-22T10:51:54,847 hclust.c:407:6: warning: left shift count >= width of type [-Wshift-count-overflow] 2024-05-22T10:51:54,847 407 | pos <<= sizeof(unsigned) * 8; 2024-05-22T10:51:54,848 | ^~~ 2024-05-22T10:51:56,883 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Idnjheaders -I/usr/include/python3.9 -c matrix.c -o build/temp.linux-armv7l-cpython-39/matrix.o -fopenmp 2024-05-22T10:51:57,002 matrix.c: In function ‘ltdMatrix_popArrange’: 2024-05-22T10:51:57,002 matrix.c:538:9: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2024-05-22T10:51:57,002 538 | if(pos != n) { 2024-05-22T10:51:57,002 | ^~ 2024-05-22T10:51:57,751 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Idnjheaders -I/usr/include/python3.9 -c mman.c -o build/temp.linux-armv7l-cpython-39/mman.o -fopenmp 2024-05-22T10:51:57,817 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Idnjheaders -I/usr/include/python3.9 -c nj.c -o build/temp.linux-armv7l-cpython-39/nj.o -fopenmp 2024-05-22T10:51:57,931 nj.c: In function ‘initQ’: 2024-05-22T10:51:57,932 nj.c:243:6: warning: left shift count >= width of type [-Wshift-count-overflow] 2024-05-22T10:51:57,932 243 | pos <<= sizeof(unsigned) * 8; 2024-05-22T10:51:57,932 | ^~~ 2024-05-22T10:51:57,933 nj.c: In function ‘initQ_MN’: 2024-05-22T10:51:57,934 nj.c:358:6: warning: left shift count >= width of type [-Wshift-count-overflow] 2024-05-22T10:51:57,934 358 | pos <<= sizeof(unsigned) * 8; 2024-05-22T10:51:57,934 | ^~~ 2024-05-22T10:51:57,937 nj.c: In function ‘minD’: 2024-05-22T10:51:57,938 nj.c:559:6: warning: left shift count >= width of type [-Wshift-count-overflow] 2024-05-22T10:51:57,938 559 | pos <<= sizeof(unsigned) * 8; 2024-05-22T10:51:57,938 | ^~~ 2024-05-22T10:51:57,939 nj.c: In function ‘maxD’: 2024-05-22T10:51:57,939 nj.c:642:6: warning: left shift count >= width of type [-Wshift-count-overflow] 2024-05-22T10:51:57,939 642 | pos <<= sizeof(unsigned) * 8; 2024-05-22T10:51:57,940 | ^~~ 2024-05-22T10:51:57,943 nj.c: In function ‘minPair’: 2024-05-22T10:51:57,943 nj.c:826:6: warning: left shift count >= width of type [-Wshift-count-overflow] 2024-05-22T10:51:57,943 826 | pos <<= sizeof(unsigned) * 8; 2024-05-22T10:51:57,943 | ^~~ 2024-05-22T10:52:00,013 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Idnjheaders -I/usr/include/python3.9 -c nwck.c -o build/temp.linux-armv7l-cpython-39/nwck.o -fopenmp 2024-05-22T10:52:00,484 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Idnjheaders -I/usr/include/python3.9 -c pherror.c -o build/temp.linux-armv7l-cpython-39/pherror.o -fopenmp 2024-05-22T10:52:00,568 pherror.c: In function ‘cfread’: 2024-05-22T10:52:00,569 pherror.c:58:35: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2024-05-22T10:52:00,569 58 | } else if(nmemb == 0 || (nmemb == -1 && (errno & EAGAIN))) { 2024-05-22T10:52:00,569 | ^~ 2024-05-22T10:52:00,663 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Idnjheaders -I/usr/include/python3.9 -c phy.c -o build/temp.linux-armv7l-cpython-39/phy.o -fopenmp 2024-05-22T10:52:01,585 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Idnjheaders -I/usr/include/python3.9 -c pydnj.c -o build/temp.linux-armv7l-cpython-39/pydnj.o -fopenmp 2024-05-22T10:52:02,127 In file included from pydnj.c:11: 2024-05-22T10:52:02,127 dnjheaders/pherror.h:20: warning: "_XOPEN_SOURCE" redefined 2024-05-22T10:52:02,127 20 | #define _XOPEN_SOURCE 600 2024-05-22T10:52:02,127 | 2024-05-22T10:52:02,128 In file included from /usr/include/arm-linux-gnueabihf/bits/libc-header-start.h:33, 2024-05-22T10:52:02,129 from /usr/include/limits.h:26, 2024-05-22T10:52:02,129 from /usr/lib/gcc/arm-linux-gnueabihf/10/include/limits.h:195, 2024-05-22T10:52:02,129 from /usr/lib/gcc/arm-linux-gnueabihf/10/include/syslimits.h:7, 2024-05-22T10:52:02,129 from /usr/lib/gcc/arm-linux-gnueabihf/10/include/limits.h:34, 2024-05-22T10:52:02,129 from /usr/include/python3.9/Python.h:11, 2024-05-22T10:52:02,130 from pydnj.c:1: 2024-05-22T10:52:02,130 /usr/include/features.h:207: note: this is the location of the previous definition 2024-05-22T10:52:02,130 207 | # define _XOPEN_SOURCE 700 2024-05-22T10:52:02,130 | 2024-05-22T10:52:02,153 pydnj.c: In function ‘py_build’: 2024-05-22T10:52:02,153 pydnj.c:165:9: warning: implicit declaration of function ‘omp_get_num_procs’ [-Wimplicit-function-declaration] 2024-05-22T10:52:02,154 165 | p = omp_get_num_procs(); 2024-05-22T10:52:02,154 | ^~~~~~~~~~~~~~~~~ 2024-05-22T10:52:02,338 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Idnjheaders -I/usr/include/python3.9 -c qseqs.c -o build/temp.linux-armv7l-cpython-39/qseqs.o -fopenmp 2024-05-22T10:52:02,527 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Idnjheaders -I/usr/include/python3.9 -c str.c -o build/temp.linux-armv7l-cpython-39/str.o -fopenmp 2024-05-22T10:52:02,637 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Idnjheaders -I/usr/include/python3.9 -c tmp.c -o build/temp.linux-armv7l-cpython-39/tmp.o -fopenmp 2024-05-22T10:52:02,822 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Idnjheaders -I/usr/include/python3.9 -c vector.c -o build/temp.linux-armv7l-cpython-39/vector.o -fopenmp 2024-05-22T10:52:02,976 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/bytescale.o build/temp.linux-armv7l-cpython-39/dnj.o build/temp.linux-armv7l-cpython-39/filebuff.o build/temp.linux-armv7l-cpython-39/hclust.o build/temp.linux-armv7l-cpython-39/matrix.o build/temp.linux-armv7l-cpython-39/mman.o build/temp.linux-armv7l-cpython-39/nj.o build/temp.linux-armv7l-cpython-39/nwck.o build/temp.linux-armv7l-cpython-39/pherror.o build/temp.linux-armv7l-cpython-39/phy.o build/temp.linux-armv7l-cpython-39/pydnj.o build/temp.linux-armv7l-cpython-39/qseqs.o build/temp.linux-armv7l-cpython-39/str.o build/temp.linux-armv7l-cpython-39/tmp.o build/temp.linux-armv7l-cpython-39/vector.o -L/usr/lib -lz -o build/lib.linux-armv7l-cpython-39/dnj.cpython-39-arm-linux-gnueabihf.so -fopenmp 2024-05-22T10:52:03,155 /usr/local/lib/python3.9/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. 2024-05-22T10:52:03,155 !! 2024-05-22T10:52:03,156 ******************************************************************************** 2024-05-22T10:52:03,156 Please avoid running ``setup.py`` directly. 2024-05-22T10:52:03,156 Instead, use pypa/build, pypa/installer or other 2024-05-22T10:52:03,156 standards-based tools. 2024-05-22T10:52:03,156 See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. 2024-05-22T10:52:03,156 ******************************************************************************** 2024-05-22T10:52:03,157 !! 2024-05-22T10:52:03,157 self.initialize_options() 2024-05-22T10:52:03,179 installing to build/bdist.linux-armv7l/wheel 2024-05-22T10:52:03,180 running install 2024-05-22T10:52:03,205 running install_lib 2024-05-22T10:52:03,228 creating build/bdist.linux-armv7l 2024-05-22T10:52:03,229 creating build/bdist.linux-armv7l/wheel 2024-05-22T10:52:03,230 copying build/lib.linux-armv7l-cpython-39/kssd.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel 2024-05-22T10:52:03,238 copying build/lib.linux-armv7l-cpython-39/kssdtree.py -> build/bdist.linux-armv7l/wheel 2024-05-22T10:52:03,241 copying build/lib.linux-armv7l-cpython-39/nj.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel 2024-05-22T10:52:03,245 copying build/lib.linux-armv7l-cpython-39/toolutils.py -> build/bdist.linux-armv7l/wheel 2024-05-22T10:52:03,248 copying build/lib.linux-armv7l-cpython-39/dnj.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel 2024-05-22T10:52:03,261 running install_egg_info 2024-05-22T10:52:03,292 Copying kssdtree.egg-info to build/bdist.linux-armv7l/wheel/kssdtree-1.1.3-py3.9.egg-info 2024-05-22T10:52:03,303 running install_scripts 2024-05-22T10:52:03,320 creating build/bdist.linux-armv7l/wheel/kssdtree-1.1.3.dist-info/WHEEL 2024-05-22T10:52:03,322 creating '/tmp/pip-wheel-gus9lggl/kssdtree-1.1.3-cp39-cp39-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2024-05-22T10:52:03,400 adding 'dnj.cpython-39-arm-linux-gnueabihf.so' 2024-05-22T10:52:03,494 adding 'kssd.cpython-39-arm-linux-gnueabihf.so' 2024-05-22T10:52:03,498 adding 'kssdtree.py' 2024-05-22T10:52:03,520 adding 'nj.cpython-39-arm-linux-gnueabihf.so' 2024-05-22T10:52:03,522 adding 'toolutils.py' 2024-05-22T10:52:03,525 adding 'kssdtree-1.1.3.dist-info/METADATA' 2024-05-22T10:52:03,526 adding 'kssdtree-1.1.3.dist-info/WHEEL' 2024-05-22T10:52:03,527 adding 'kssdtree-1.1.3.dist-info/dependency_links.txt' 2024-05-22T10:52:03,528 adding 'kssdtree-1.1.3.dist-info/top_level.txt' 2024-05-22T10:52:03,528 adding 'kssdtree-1.1.3.dist-info/RECORD' 2024-05-22T10:52:03,540 removing build/bdist.linux-armv7l/wheel 2024-05-22T10:52:03,700 Building wheel for kssdtree (setup.py): finished with status 'done' 2024-05-22T10:52:03,707 Created wheel for kssdtree: filename=kssdtree-1.1.3-cp39-cp39-linux_armv7l.whl size=375684 sha256=6df2298fa80eefa823153fa0b9db67e35da72da7f88c5949f4f637872ff22c3b 2024-05-22T10:52:03,708 Stored in directory: /tmp/pip-ephem-wheel-cache-pzybx3x9/wheels/36/38/31/21446953088ebc2693e951bf8259d229e213b83380d41b4797 2024-05-22T10:52:03,718 Successfully built kssdtree 2024-05-22T10:52:03,732 Removed build tracker: '/tmp/pip-build-tracker-g9uf08uw'