2024-05-22T13:07:35,358 Created temporary directory: /tmp/pip-build-tracker-mn9_i_rz 2024-05-22T13:07:35,359 Initialized build tracking at /tmp/pip-build-tracker-mn9_i_rz 2024-05-22T13:07:35,360 Created build tracker: /tmp/pip-build-tracker-mn9_i_rz 2024-05-22T13:07:35,360 Entered build tracker: /tmp/pip-build-tracker-mn9_i_rz 2024-05-22T13:07:35,361 Created temporary directory: /tmp/pip-wheel-2pm2yawl 2024-05-22T13:07:35,364 Created temporary directory: /tmp/pip-ephem-wheel-cache-_tc5_ylu 2024-05-22T13:07:35,386 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2024-05-22T13:07:35,390 2 location(s) to search for versions of dendropy: 2024-05-22T13:07:35,390 * https://pypi.org/simple/dendropy/ 2024-05-22T13:07:35,390 * https://www.piwheels.org/simple/dendropy/ 2024-05-22T13:07:35,390 Fetching project page and analyzing links: https://pypi.org/simple/dendropy/ 2024-05-22T13:07:35,391 Getting page https://pypi.org/simple/dendropy/ 2024-05-22T13:07:35,393 Found index url https://pypi.org/simple/ 2024-05-22T13:07:35,625 Fetched page https://pypi.org/simple/dendropy/ as application/vnd.pypi.simple.v1+json 2024-05-22T13:07:35,631 Found link https://files.pythonhosted.org/packages/03/48/8379b3e170d60052da7ccf3387549af17d46808a39062fbb234df3038fa0/DendroPy-3.7.0.tar.gz (from https://pypi.org/simple/dendropy/), version: 3.7.0 2024-05-22T13:07:35,632 Found link https://files.pythonhosted.org/packages/17/0a/914df0e24dc378acdd9cb1705c1fcfcf15dd1da8992de567a4cce85bc31e/DendroPy-3.7.1.tar.gz (from https://pypi.org/simple/dendropy/), version: 3.7.1 2024-05-22T13:07:35,633 Found link https://files.pythonhosted.org/packages/a2/f5/5c4fb1cde35799eeacb35ac289c271371a0c0fd3197548fab7e184900cc7/DendroPy-3.8.0.tar.gz (from https://pypi.org/simple/dendropy/), version: 3.8.0 2024-05-22T13:07:35,633 Found link https://files.pythonhosted.org/packages/95/73/7b1084d03e025b27c79342d6935810969edb86677ef3e5eb1f9e5aec1e6f/DendroPy-3.8.1.tar.gz (from https://pypi.org/simple/dendropy/), version: 3.8.1 2024-05-22T13:07:35,634 Found link https://files.pythonhosted.org/packages/18/2e/141c0d6a99905b9be3256aae6a87504f14853b20e40a6d89c7c4c465769d/DendroPy-3.9.0.tar.gz (from https://pypi.org/simple/dendropy/), version: 3.9.0 2024-05-22T13:07:35,635 Found link https://files.pythonhosted.org/packages/7e/08/a968b51274c8476084521f97af4e8fadd09a6b42a727141f502cc33767c5/DendroPy-3.10.0.tar.gz (from https://pypi.org/simple/dendropy/), version: 3.10.0 2024-05-22T13:07:35,636 Found link https://files.pythonhosted.org/packages/3a/26/552efe612d37cff025f1dd1350eb643edd6dda1cb628d7cbe572e343a049/DendroPy-3.10.1.tar.gz (from https://pypi.org/simple/dendropy/), version: 3.10.1 2024-05-22T13:07:35,636 Found link https://files.pythonhosted.org/packages/0f/3e/5549b668d04241c77c8f5b26f0c94a87ad93b6b9089fc6bcd510eba5d5f4/DendroPy-3.11.0.tar.gz (from https://pypi.org/simple/dendropy/), version: 3.11.0 2024-05-22T13:07:35,637 Found link https://files.pythonhosted.org/packages/43/22/69b7713b094697f8a432abe96c44a155519ef67b3c31221de32f4c3d5fa5/DendroPy-3.12.0.tar.gz (from https://pypi.org/simple/dendropy/), version: 3.12.0 2024-05-22T13:07:35,637 Found link https://files.pythonhosted.org/packages/5f/ae/14c92b087632944149cca61ec8daf41eee0083d0fad30c9248edb7e227d2/DendroPy-3.12.2.tar.gz (from https://pypi.org/simple/dendropy/), version: 3.12.2 2024-05-22T13:07:35,638 Found link https://files.pythonhosted.org/packages/3d/c0/e0a20d1cf4b268757842a03f36452095fccb8eae5ebd541548e29c6ca1e3/DendroPy-3.12.3.tar.gz (from https://pypi.org/simple/dendropy/), version: 3.12.3 2024-05-22T13:07:35,639 Found link https://files.pythonhosted.org/packages/f0/d3/e0180bf1a8d599b8f847ab7a1b19fe4d7a95b3613c57b57108e2a48bb59f/DendroPy-4.0.0.rc1.tar.gz (from https://pypi.org/simple/dendropy/), version: 4.0.0.rc1 2024-05-22T13:07:35,639 Found link https://files.pythonhosted.org/packages/55/dd/0d59b7bde4b230fadb999bc84cc45668a53733cb63e4aacf7e6ab4a9e175/DendroPy-4.0.0.tar.gz (from https://pypi.org/simple/dendropy/), version: 4.0.0 2024-05-22T13:07:35,640 Found link https://files.pythonhosted.org/packages/52/ba/02652626ed0d56afadc990e6540d998217831d856170ff0c68c3afbef866/DendroPy-4.0.1.tar.gz (from https://pypi.org/simple/dendropy/), version: 4.0.1 2024-05-22T13:07:35,641 Found link https://files.pythonhosted.org/packages/62/10/117c87b76f5f84d4559bd7ad25af04f11369ef8267f3c8e7d62769efc85d/DendroPy-4.0.2.tar.gz (from https://pypi.org/simple/dendropy/), version: 4.0.2 2024-05-22T13:07:35,642 Found link https://files.pythonhosted.org/packages/66/0b/72ca62a6e87ddb9b70cac2cf1fc199ca00127fc168c52bcbcbf30cfb5947/DendroPy-4.0.3.tar.gz (from https://pypi.org/simple/dendropy/), version: 4.0.3 2024-05-22T13:07:35,642 Found link https://files.pythonhosted.org/packages/65/3a/19556a58c560de488dffbf3c7fe7c9ed34c1a6223f0dfe971224a42aaf39/DendroPy-4.1.0.tar.gz (from https://pypi.org/simple/dendropy/), version: 4.1.0 2024-05-22T13:07:35,643 Found link https://files.pythonhosted.org/packages/e6/5a/d48c8d3f8100efd5eb6e6142f28bf1c13200e08882e59596369035ebc138/DendroPy-4.2.0.tar.gz (from https://pypi.org/simple/dendropy/), version: 4.2.0 2024-05-22T13:07:35,643 Found link https://files.pythonhosted.org/packages/58/14/d4559893d72675b322c1d60229ef3490bc5c2f5b28c5cc339956aaf8f507/DendroPy-4.3.0.tar.gz (from https://pypi.org/simple/dendropy/), version: 4.3.0 2024-05-22T13:07:35,644 Found link https://files.pythonhosted.org/packages/f5/21/17e4fbb1c2a68421eec43930b1e118660c7483229f1b28ba4402e8856884/DendroPy-4.4.0.tar.gz (from https://pypi.org/simple/dendropy/), version: 4.4.0 2024-05-22T13:07:35,644 Found link 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https://files.pythonhosted.org/packages/7c/3b/f880fd07cb79a46ca838e46ba021fcdaa464bb21e2a9264a7afe77046a88/DendroPy-4.6.1-py3-none-any.whl (from https://pypi.org/simple/dendropy/) 2024-05-22T13:07:35,647 Found link https://files.pythonhosted.org/packages/35/fc/0ff301d0f2484b61f2cc46cfd7649c530cad6313c7f7a695f8cabff8a061/DendroPy-4.6.1.tar.gz (from https://pypi.org/simple/dendropy/), version: 4.6.1 2024-05-22T13:07:35,648 Skipping link: No binaries permitted for dendropy: https://files.pythonhosted.org/packages/a9/70/c715b8467b7cd08a847ad303ce8a2d236e001a526f37179fe77e503602cb/DendroPy-4.6.3-py3-none-any.whl (from https://pypi.org/simple/dendropy/) 2024-05-22T13:07:35,649 Found link https://files.pythonhosted.org/packages/52/f2/c8524894d8bbd5cfb4eca7c350e4407137bd11a752a152c62617ce6f6b76/DendroPy-4.6.3.tar.gz (from https://pypi.org/simple/dendropy/), version: 4.6.3 2024-05-22T13:07:35,649 Skipping link: No binaries permitted for dendropy: https://files.pythonhosted.org/packages/f1/f5/fb4483829a7a9b08c974281d2519d110b69284a43dec7ae320e9971fe4f5/DendroPy-4.6.4-py3-none-any.whl (from https://pypi.org/simple/dendropy/) 2024-05-22T13:07:35,650 Found link https://files.pythonhosted.org/packages/29/7a/0e09e052a746c9e97e45d6e0803e705e13426aa01a13ab845f6108ea4fd5/DendroPy-4.6.4.tar.gz (from https://pypi.org/simple/dendropy/), version: 4.6.4 2024-05-22T13:07:35,651 Skipping link: No binaries permitted for dendropy: https://files.pythonhosted.org/packages/54/2a/e95f42bcc16806f5f5ed49ed8b613830c3831e8a1ecea845756b882672e1/DendroPy-5.0.0-py3-none-any.whl (from https://pypi.org/simple/dendropy/) (requires-python:>=3.6) 2024-05-22T13:07:35,652 Found link https://files.pythonhosted.org/packages/96/33/c3a06df7aec829e8b79b91503708d750d9c4842cfc4377ae215c1e61d97d/DendroPy-5.0.0.tar.gz (from https://pypi.org/simple/dendropy/) (requires-python:>=3.6), version: 5.0.0 2024-05-22T13:07:35,653 Fetching project page and analyzing links: https://www.piwheels.org/simple/dendropy/ 2024-05-22T13:07:35,653 Getting page https://www.piwheels.org/simple/dendropy/ 2024-05-22T13:07:35,654 Found index url https://www.piwheels.org/simple/ 2024-05-22T13:07:35,902 Fetched page https://www.piwheels.org/simple/dendropy/ as text/html 2024-05-22T13:07:35,909 Skipping link: No binaries permitted for dendropy: https://www.piwheels.org/simple/dendropy/DendroPy-4.6.1-py3-none-any.whl#sha256=da58df7fced8722b607b168cb9ffec744a299b5ebdebb62786835351122e5236 (from https://www.piwheels.org/simple/dendropy/) 2024-05-22T13:07:35,909 Skipping link: No binaries permitted for dendropy: https://www.piwheels.org/simple/dendropy/DendroPy-4.6.0-py3-none-any.whl#sha256=967847ceda8c3c50c9c82bf0b17ad1cfed383857502a32878e1870fde0b9f662 (from https://www.piwheels.org/simple/dendropy/) 2024-05-22T13:07:35,910 Skipping link: No binaries permitted for dendropy: https://www.piwheels.org/simple/dendropy/DendroPy-4.5.2-py3-none-any.whl#sha256=7492efc1d60e0d280a9effe9093dd14da694300275c2dbc2c3cd116390521bc3 (from https://www.piwheels.org/simple/dendropy/) 2024-05-22T13:07:35,911 Skipping link: No binaries permitted for dendropy: https://www.piwheels.org/simple/dendropy/DendroPy-4.5.1-py3-none-any.whl#sha256=0113d22b31642c3c63327d0eab46f2aff2079181bb537c2007796802874bed73 (from https://www.piwheels.org/simple/dendropy/) 2024-05-22T13:07:35,911 Skipping link: No binaries permitted for dendropy: https://www.piwheels.org/simple/dendropy/DendroPy-4.4.0-py3-none-any.whl#sha256=04bb1c1125a9435d6f61e956aaa59a6789d16640f9371e367f6182331570eeb9 (from https://www.piwheels.org/simple/dendropy/) 2024-05-22T13:07:35,912 Skipping link: No binaries permitted for dendropy: https://www.piwheels.org/simple/dendropy/DendroPy-4.3.0-py3-none-any.whl#sha256=b762edba2a883b8a9549d498742e7ffe9126f33855d270fc0fa42c0ffd77e224 (from https://www.piwheels.org/simple/dendropy/) 2024-05-22T13:07:35,912 Skipping link: No binaries permitted for dendropy: https://www.piwheels.org/simple/dendropy/DendroPy-4.2.0-py3-none-any.whl#sha256=b708e09e2b790f482496fd2e17b5159e212994a6d7d234771e2c9e5e208aa55e (from https://www.piwheels.org/simple/dendropy/) 2024-05-22T13:07:35,913 Skipping link: No binaries permitted for dendropy: https://www.piwheels.org/simple/dendropy/DendroPy-4.1.0-py3-none-any.whl#sha256=1b13aa093d01409bfb95728a68dbff117529dc40cd5ac6fa4d4fc30756ef5357 (from https://www.piwheels.org/simple/dendropy/) 2024-05-22T13:07:35,914 Skipping link: No binaries permitted for dendropy: https://www.piwheels.org/simple/dendropy/DendroPy-4.0.3-py3-none-any.whl#sha256=eea9ba2017437bada349db5b12b6d9c8c6dfcbfea1832bac2a862b3c5503ceb3 (from https://www.piwheels.org/simple/dendropy/) 2024-05-22T13:07:35,914 Skipping link: No binaries permitted for dendropy: https://www.piwheels.org/simple/dendropy/DendroPy-4.0.2-py3-none-any.whl#sha256=81648919d17fb5fdc36f4053aff572b4a2d358a189d2462e15aab8760eb71d1a (from https://www.piwheels.org/simple/dendropy/) 2024-05-22T13:07:35,915 Skipping link: No binaries permitted for dendropy: https://www.piwheels.org/simple/dendropy/DendroPy-4.0.1-py3-none-any.whl#sha256=4ba8a912afd561e3116cdfbcd6c168cafc69eec3339bfdb79858e93000402410 (from https://www.piwheels.org/simple/dendropy/) 2024-05-22T13:07:35,916 Skipping link: No binaries permitted for dendropy: https://www.piwheels.org/simple/dendropy/DendroPy-4.0.0-py3-none-any.whl#sha256=4687108db4e411473e5ccce4ec9a99fc10ad22b8da4c6e817154202a3e6cc0e9 (from https://www.piwheels.org/simple/dendropy/) 2024-05-22T13:07:35,916 Skipping link: No binaries permitted for dendropy: https://www.piwheels.org/simple/dendropy/DendroPy-4.0.0rc1-py3-none-any.whl#sha256=0310d7072108356c0655941033b16778503a2c6ec2d84ac1eeb88a41eb92a543 (from https://www.piwheels.org/simple/dendropy/) 2024-05-22T13:07:35,917 Skipping link: not a file: https://www.piwheels.org/simple/dendropy/ 2024-05-22T13:07:35,918 Skipping link: not a file: https://pypi.org/simple/dendropy/ 2024-05-22T13:07:35,951 Given no hashes to check 1 links for project 'dendropy': discarding no candidates 2024-05-22T13:07:35,980 Collecting dendropy==4.6.3 2024-05-22T13:07:35,983 Created temporary directory: /tmp/pip-unpack-t4e4uvsp 2024-05-22T13:07:36,214 Downloading DendroPy-4.6.3.tar.gz (15.2 MB) 2024-05-22T13:07:41,981 Added dendropy==4.6.3 from https://files.pythonhosted.org/packages/52/f2/c8524894d8bbd5cfb4eca7c350e4407137bd11a752a152c62617ce6f6b76/DendroPy-4.6.3.tar.gz to build tracker '/tmp/pip-build-tracker-mn9_i_rz' 2024-05-22T13:07:41,983 Running setup.py (path:/tmp/pip-wheel-2pm2yawl/dendropy_b442e0ed459f42c7974728dd88267ad3/setup.py) egg_info for package dendropy 2024-05-22T13:07:41,983 Created temporary directory: /tmp/pip-pip-egg-info-kboyqo39 2024-05-22T13:07:41,984 Preparing metadata (setup.py): started 2024-05-22T13:07:41,985 Running command python setup.py egg_info 2024-05-22T13:07:43,090 running egg_info 2024-05-22T13:07:43,094 creating /tmp/pip-pip-egg-info-kboyqo39/DendroPy.egg-info 2024-05-22T13:07:43,120 writing /tmp/pip-pip-egg-info-kboyqo39/DendroPy.egg-info/PKG-INFO 2024-05-22T13:07:43,124 writing dependency_links to /tmp/pip-pip-egg-info-kboyqo39/DendroPy.egg-info/dependency_links.txt 2024-05-22T13:07:43,125 writing entry points to /tmp/pip-pip-egg-info-kboyqo39/DendroPy.egg-info/entry_points.txt 2024-05-22T13:07:43,127 writing top-level names to /tmp/pip-pip-egg-info-kboyqo39/DendroPy.egg-info/top_level.txt 2024-05-22T13:07:43,128 writing manifest file '/tmp/pip-pip-egg-info-kboyqo39/DendroPy.egg-info/SOURCES.txt' 2024-05-22T13:07:43,238 reading manifest file '/tmp/pip-pip-egg-info-kboyqo39/DendroPy.egg-info/SOURCES.txt' 2024-05-22T13:07:43,239 reading manifest template 'MANIFEST.in' 2024-05-22T13:07:43,241 warning: no files found matching 'doc/Makefile' 2024-05-22T13:07:43,241 warning: no files found matching '*' under directory 'doc/source' 2024-05-22T13:07:43,436 warning: no previously-included files matching '.DS_Store' found anywhere in distribution 2024-05-22T13:07:43,438 warning: no previously-included files matching '*.pyc' found anywhere in distribution 2024-05-22T13:07:43,440 warning: no previously-included files matching '.gitignore' found anywhere in distribution 2024-05-22T13:07:43,441 warning: no previously-included files matching '.gitattributes' found anywhere in distribution 2024-05-22T13:07:43,443 warning: no previously-included files matching '.idea' found anywhere in distribution 2024-05-22T13:07:43,444 warning: no previously-included files matching '__pycache__' found anywhere in distribution 2024-05-22T13:07:43,445 adding license file 'LICENSE.rst' 2024-05-22T13:07:43,446 adding license file 'AUTHORS.rst' 2024-05-22T13:07:43,467 writing manifest file '/tmp/pip-pip-egg-info-kboyqo39/DendroPy.egg-info/SOURCES.txt' 2024-05-22T13:07:43,574 Preparing metadata (setup.py): finished with status 'done' 2024-05-22T13:07:43,577 Source in /tmp/pip-wheel-2pm2yawl/dendropy_b442e0ed459f42c7974728dd88267ad3 has version 4.6.3, which satisfies requirement dendropy==4.6.3 from https://files.pythonhosted.org/packages/52/f2/c8524894d8bbd5cfb4eca7c350e4407137bd11a752a152c62617ce6f6b76/DendroPy-4.6.3.tar.gz 2024-05-22T13:07:43,579 Removed dendropy==4.6.3 from https://files.pythonhosted.org/packages/52/f2/c8524894d8bbd5cfb4eca7c350e4407137bd11a752a152c62617ce6f6b76/DendroPy-4.6.3.tar.gz from build tracker '/tmp/pip-build-tracker-mn9_i_rz' 2024-05-22T13:07:43,583 Created temporary directory: /tmp/pip-unpack-1c0m1ha8 2024-05-22T13:07:43,584 Created temporary directory: /tmp/pip-unpack-nqyj34_f 2024-05-22T13:07:43,588 Building wheels for collected packages: dendropy 2024-05-22T13:07:43,592 Created temporary directory: /tmp/pip-wheel-gort7a8e 2024-05-22T13:07:43,592 Building wheel for dendropy (setup.py): started 2024-05-22T13:07:43,594 Destination directory: /tmp/pip-wheel-gort7a8e 2024-05-22T13:07:43,594 Running command python setup.py bdist_wheel 2024-05-22T13:07:44,470 running bdist_wheel 2024-05-22T13:07:44,604 running build 2024-05-22T13:07:44,605 running build_py 2024-05-22T13:07:44,634 creating build 2024-05-22T13:07:44,634 creating build/lib 2024-05-22T13:07:44,635 creating build/lib/dendropy 2024-05-22T13:07:44,636 copying src/dendropy/__init__.py -> build/lib/dendropy 2024-05-22T13:07:44,639 copying src/dendropy/__main__.py -> build/lib/dendropy 2024-05-22T13:07:44,641 creating build/lib/dendropy/calculate 2024-05-22T13:07:44,642 copying src/dendropy/calculate/combinatorics.py -> build/lib/dendropy/calculate 2024-05-22T13:07:44,644 copying src/dendropy/calculate/treemeasure.py -> build/lib/dendropy/calculate 2024-05-22T13:07:44,646 copying src/dendropy/calculate/treescore.py -> build/lib/dendropy/calculate 2024-05-22T13:07:44,647 copying src/dendropy/calculate/phylogeneticdistance.py -> build/lib/dendropy/calculate 2024-05-22T13:07:44,651 copying src/dendropy/calculate/__init__.py -> build/lib/dendropy/calculate 2024-05-22T13:07:44,652 copying src/dendropy/calculate/statistics.py -> build/lib/dendropy/calculate 2024-05-22T13:07:44,654 copying src/dendropy/calculate/probability.py -> build/lib/dendropy/calculate 2024-05-22T13:07:44,656 copying src/dendropy/calculate/popgenstat.py -> build/lib/dendropy/calculate 2024-05-22T13:07:44,659 copying src/dendropy/calculate/treecompare.py -> build/lib/dendropy/calculate 2024-05-22T13:07:44,661 copying src/dendropy/calculate/treesum.py -> build/lib/dendropy/calculate 2024-05-22T13:07:44,664 copying src/dendropy/calculate/mathfn.py -> build/lib/dendropy/calculate 2024-05-22T13:07:44,665 copying src/dendropy/calculate/profiledistance.py -> build/lib/dendropy/calculate 2024-05-22T13:07:44,668 creating build/lib/dendropy/simulate 2024-05-22T13:07:44,669 copying src/dendropy/simulate/popgensim.py -> build/lib/dendropy/simulate 2024-05-22T13:07:44,672 copying src/dendropy/simulate/treesim.py -> build/lib/dendropy/simulate 2024-05-22T13:07:44,674 copying src/dendropy/simulate/__init__.py -> build/lib/dendropy/simulate 2024-05-22T13:07:44,676 copying src/dendropy/simulate/charsim.py -> build/lib/dendropy/simulate 2024-05-22T13:07:44,679 creating build/lib/dendropy/datamodel 2024-05-22T13:07:44,680 copying src/dendropy/datamodel/charmatrixmodel.py -> build/lib/dendropy/datamodel 2024-05-22T13:07:44,683 copying src/dendropy/datamodel/charstatemodel.py -> build/lib/dendropy/datamodel 2024-05-22T13:07:44,686 copying src/dendropy/datamodel/datasetmodel.py -> build/lib/dendropy/datamodel 2024-05-22T13:07:44,689 copying src/dendropy/datamodel/__init__.py -> build/lib/dendropy/datamodel 2024-05-22T13:07:44,691 copying src/dendropy/datamodel/taxonmodel.py -> build/lib/dendropy/datamodel 2024-05-22T13:07:44,694 copying src/dendropy/datamodel/basemodel.py -> build/lib/dendropy/datamodel 2024-05-22T13:07:44,697 copying src/dendropy/datamodel/treecollectionmodel.py -> build/lib/dendropy/datamodel 2024-05-22T13:07:44,702 creating build/lib/dendropy/legacy 2024-05-22T13:07:44,703 copying src/dendropy/legacy/ncbi.py -> build/lib/dendropy/legacy 2024-05-22T13:07:44,706 copying src/dendropy/legacy/popgensim.py -> build/lib/dendropy/legacy 2024-05-22T13:07:44,707 copying src/dendropy/legacy/coalescent.py -> build/lib/dendropy/legacy 2024-05-22T13:07:44,709 copying src/dendropy/legacy/treecalc.py -> build/lib/dendropy/legacy 2024-05-22T13:07:44,711 copying src/dendropy/legacy/treesim.py -> build/lib/dendropy/legacy 2024-05-22T13:07:44,714 copying src/dendropy/legacy/treemanip.py -> build/lib/dendropy/legacy 2024-05-22T13:07:44,715 copying src/dendropy/legacy/__init__.py -> build/lib/dendropy/legacy 2024-05-22T13:07:44,717 copying src/dendropy/legacy/continuous.py -> build/lib/dendropy/legacy 2024-05-22T13:07:44,719 copying src/dendropy/legacy/seqsim.py -> build/lib/dendropy/legacy 2024-05-22T13:07:44,721 copying src/dendropy/legacy/reconcile.py -> build/lib/dendropy/legacy 2024-05-22T13:07:44,723 copying src/dendropy/legacy/popgenstat.py -> build/lib/dendropy/legacy 2024-05-22T13:07:44,725 copying src/dendropy/legacy/seqmodel.py -> build/lib/dendropy/legacy 2024-05-22T13:07:44,727 copying src/dendropy/legacy/treesum.py -> build/lib/dendropy/legacy 2024-05-22T13:07:44,728 copying src/dendropy/legacy/treesplit.py -> build/lib/dendropy/legacy 2024-05-22T13:07:44,731 creating build/lib/dendropy/utility 2024-05-22T13:07:44,732 copying src/dendropy/utility/urlio.py -> build/lib/dendropy/utility 2024-05-22T13:07:44,734 copying src/dendropy/utility/debug.py -> build/lib/dendropy/utility 2024-05-22T13:07:44,735 copying src/dendropy/utility/error.py -> build/lib/dendropy/utility 2024-05-22T13:07:44,737 copying src/dendropy/utility/timeprocessing.py -> build/lib/dendropy/utility 2024-05-22T13:07:44,739 copying src/dendropy/utility/constants.py -> build/lib/dendropy/utility 2024-05-22T13:07:44,741 copying src/dendropy/utility/metavar.py -> build/lib/dendropy/utility 2024-05-22T13:07:44,743 copying src/dendropy/utility/processio.py -> build/lib/dendropy/utility 2024-05-22T13:07:44,745 copying src/dendropy/utility/deprecate.py -> build/lib/dendropy/utility 2024-05-22T13:07:44,747 copying src/dendropy/utility/terminal.py -> build/lib/dendropy/utility 2024-05-22T13:07:44,748 copying src/dendropy/utility/bitprocessing.py -> build/lib/dendropy/utility 2024-05-22T13:07:44,751 copying src/dendropy/utility/container.py -> build/lib/dendropy/utility 2024-05-22T13:07:44,753 copying src/dendropy/utility/messaging.py -> build/lib/dendropy/utility 2024-05-22T13:07:44,756 copying src/dendropy/utility/__init__.py -> build/lib/dendropy/utility 2024-05-22T13:07:44,757 copying src/dendropy/utility/bibtex.py -> build/lib/dendropy/utility 2024-05-22T13:07:44,760 copying src/dendropy/utility/cli.py -> build/lib/dendropy/utility 2024-05-22T13:07:44,762 copying src/dendropy/utility/textprocessing.py -> build/lib/dendropy/utility 2024-05-22T13:07:44,764 copying src/dendropy/utility/filesys.py -> build/lib/dendropy/utility 2024-05-22T13:07:44,766 copying src/dendropy/utility/vcsinfo.py -> build/lib/dendropy/utility 2024-05-22T13:07:44,769 creating build/lib/dendropy/interop 2024-05-22T13:07:44,775 copying src/dendropy/interop/ape.py -> build/lib/dendropy/interop 2024-05-22T13:07:44,778 copying src/dendropy/interop/itol.py -> build/lib/dendropy/interop 2024-05-22T13:07:44,780 copying src/dendropy/interop/gbif.py -> build/lib/dendropy/interop 2024-05-22T13:07:44,783 copying src/dendropy/interop/ete.py -> build/lib/dendropy/interop 2024-05-22T13:07:44,785 copying src/dendropy/interop/genbank.py -> build/lib/dendropy/interop 2024-05-22T13:07:44,787 copying src/dendropy/interop/muscle.py -> build/lib/dendropy/interop 2024-05-22T13:07:44,789 copying src/dendropy/interop/rspr.py -> build/lib/dendropy/interop 2024-05-22T13:07:44,791 copying src/dendropy/interop/seqgen.py -> build/lib/dendropy/interop 2024-05-22T13:07:44,794 copying src/dendropy/interop/raxml.py -> build/lib/dendropy/interop 2024-05-22T13:07:44,797 copying src/dendropy/interop/biopython.py -> build/lib/dendropy/interop 2024-05-22T13:07:44,799 copying src/dendropy/interop/paup.py -> build/lib/dendropy/interop 2024-05-22T13:07:44,802 copying src/dendropy/interop/__init__.py -> build/lib/dendropy/interop 2024-05-22T13:07:44,804 copying src/dendropy/interop/rstats.py -> build/lib/dendropy/interop 2024-05-22T13:07:44,806 copying src/dendropy/interop/entrez.py -> build/lib/dendropy/interop 2024-05-22T13:07:44,809 creating build/lib/dendropy/model 2024-05-22T13:07:44,810 copying src/dendropy/model/coalescent.py -> build/lib/dendropy/model 2024-05-22T13:07:44,813 copying src/dendropy/model/discrete.py -> build/lib/dendropy/model 2024-05-22T13:07:44,815 copying src/dendropy/model/protractedspeciation.py -> build/lib/dendropy/model 2024-05-22T13:07:44,818 copying src/dendropy/model/parsimony.py -> build/lib/dendropy/model 2024-05-22T13:07:44,821 copying src/dendropy/model/__init__.py -> build/lib/dendropy/model 2024-05-22T13:07:44,823 copying src/dendropy/model/continuous.py -> build/lib/dendropy/model 2024-05-22T13:07:44,825 copying src/dendropy/model/reconcile.py -> build/lib/dendropy/model 2024-05-22T13:07:44,827 copying src/dendropy/model/birthdeath.py -> build/lib/dendropy/model 2024-05-22T13:07:44,831 copying src/dendropy/model/treeshape.py -> build/lib/dendropy/model 2024-05-22T13:07:44,833 copying src/dendropy/model/multispeciescoalescent.py -> build/lib/dendropy/model 2024-05-22T13:07:44,836 creating build/lib/dendropy/application 2024-05-22T13:07:44,837 copying src/dendropy/application/sumtrees.py -> build/lib/dendropy/application 2024-05-22T13:07:44,842 copying src/dendropy/application/__init__.py -> build/lib/dendropy/application 2024-05-22T13:07:44,843 copying src/dendropy/application/dendropy_format.py -> build/lib/dendropy/application 2024-05-22T13:07:44,845 copying src/dendropy/application/sumlabels.py -> build/lib/dendropy/application 2024-05-22T13:07:44,848 creating build/lib/dendropy/mathlib 2024-05-22T13:07:44,849 copying src/dendropy/mathlib/__init__.py -> build/lib/dendropy/mathlib 2024-05-22T13:07:44,850 copying src/dendropy/mathlib/statistics.py -> build/lib/dendropy/mathlib 2024-05-22T13:07:44,852 copying src/dendropy/mathlib/probability.py -> build/lib/dendropy/mathlib 2024-05-22T13:07:44,853 copying src/dendropy/mathlib/mathfn.py -> build/lib/dendropy/mathlib 2024-05-22T13:07:44,856 creating build/lib/dendropy/dataio 2024-05-22T13:07:44,857 copying src/dendropy/dataio/fastareader.py -> build/lib/dendropy/dataio 2024-05-22T13:07:44,859 copying src/dendropy/dataio/ioservice.py -> build/lib/dendropy/dataio 2024-05-22T13:07:44,862 copying src/dendropy/dataio/newickreader.py -> build/lib/dendropy/dataio 2024-05-22T13:07:44,865 copying src/dendropy/dataio/nexusprocessing.py -> build/lib/dendropy/dataio 2024-05-22T13:07:44,867 copying src/dendropy/dataio/tokenizer.py -> build/lib/dendropy/dataio 2024-05-22T13:07:44,869 copying src/dendropy/dataio/newick.py -> build/lib/dendropy/dataio 2024-05-22T13:07:44,871 copying src/dendropy/dataio/nexusreader.py -> build/lib/dendropy/dataio 2024-05-22T13:07:44,875 copying src/dendropy/dataio/newickyielder.py -> build/lib/dendropy/dataio 2024-05-22T13:07:44,876 copying src/dendropy/dataio/nexusyielder.py -> build/lib/dendropy/dataio 2024-05-22T13:07:44,878 copying src/dendropy/dataio/xmlprocessing.py -> build/lib/dendropy/dataio 2024-05-22T13:07:44,880 copying src/dendropy/dataio/__init__.py -> build/lib/dendropy/dataio 2024-05-22T13:07:44,883 copying src/dendropy/dataio/nexmlwriter.py -> build/lib/dendropy/dataio 2024-05-22T13:07:44,885 copying src/dendropy/dataio/newickwriter.py -> build/lib/dendropy/dataio 2024-05-22T13:07:44,888 copying src/dendropy/dataio/nexmlyielder.py -> build/lib/dendropy/dataio 2024-05-22T13:07:44,890 copying src/dendropy/dataio/phylipwriter.py -> build/lib/dendropy/dataio 2024-05-22T13:07:44,892 copying src/dendropy/dataio/nexuswriter.py -> build/lib/dendropy/dataio 2024-05-22T13:07:44,894 copying src/dendropy/dataio/nexmlreader.py -> build/lib/dendropy/dataio 2024-05-22T13:07:44,897 copying src/dendropy/dataio/multiphylipreader.py -> build/lib/dendropy/dataio 2024-05-22T13:07:44,899 copying src/dendropy/dataio/phylipreader.py -> build/lib/dendropy/dataio 2024-05-22T13:07:44,902 copying src/dendropy/dataio/fastawriter.py -> build/lib/dendropy/dataio 2024-05-22T13:07:44,904 creating build/lib/dendropy/datamodel/treemodel 2024-05-22T13:07:44,905 copying src/dendropy/datamodel/treemodel/_node.py -> build/lib/dendropy/datamodel/treemodel 2024-05-22T13:07:44,909 copying src/dendropy/datamodel/treemodel/_edge.py -> build/lib/dendropy/datamodel/treemodel 2024-05-22T13:07:44,911 copying src/dendropy/datamodel/treemodel/_bipartition.py -> build/lib/dendropy/datamodel/treemodel 2024-05-22T13:07:44,914 copying src/dendropy/datamodel/treemodel/__init__.py -> build/lib/dendropy/datamodel/treemodel 2024-05-22T13:07:44,916 copying src/dendropy/datamodel/treemodel/_tree.py -> build/lib/dendropy/datamodel/treemodel 2024-05-22T13:07:44,921 creating build/lib/dendropy/utility/libexec 2024-05-22T13:07:44,922 copying src/dendropy/utility/libexec/__init__.py -> build/lib/dendropy/utility/libexec 2024-05-22T13:07:44,923 running egg_info 2024-05-22T13:07:44,951 writing src/DendroPy.egg-info/PKG-INFO 2024-05-22T13:07:44,954 writing dependency_links to src/DendroPy.egg-info/dependency_links.txt 2024-05-22T13:07:44,956 writing entry points to src/DendroPy.egg-info/entry_points.txt 2024-05-22T13:07:44,957 writing top-level names to src/DendroPy.egg-info/top_level.txt 2024-05-22T13:07:45,009 reading manifest file 'src/DendroPy.egg-info/SOURCES.txt' 2024-05-22T13:07:45,025 reading manifest template 'MANIFEST.in' 2024-05-22T13:07:45,026 warning: no files found matching 'doc/Makefile' 2024-05-22T13:07:45,026 warning: no files found matching '*' under directory 'doc/source' 2024-05-22T13:07:45,208 warning: no previously-included files matching '.DS_Store' found anywhere in distribution 2024-05-22T13:07:45,212 warning: no previously-included files matching '*.pyc' found anywhere in distribution 2024-05-22T13:07:45,215 warning: no previously-included files matching '.gitignore' found anywhere in distribution 2024-05-22T13:07:45,218 warning: no previously-included files matching '.gitattributes' found anywhere in distribution 2024-05-22T13:07:45,221 warning: no previously-included files matching '.idea' found anywhere in distribution 2024-05-22T13:07:45,224 warning: no previously-included files matching '__pycache__' found anywhere in distribution 2024-05-22T13:07:45,224 adding license file 'LICENSE.rst' 2024-05-22T13:07:45,225 adding license file 'AUTHORS.rst' 2024-05-22T13:07:45,256 writing manifest file 'src/DendroPy.egg-info/SOURCES.txt' 2024-05-22T13:07:45,324 /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. 2024-05-22T13:07:45,324 !! 2024-05-22T13:07:45,325 ******************************************************************************** 2024-05-22T13:07:45,326 Please avoid running ``setup.py`` directly. 2024-05-22T13:07:45,326 Instead, use pypa/build, pypa/installer or other 2024-05-22T13:07:45,327 standards-based tools. 2024-05-22T13:07:45,328 See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. 2024-05-22T13:07:45,329 ******************************************************************************** 2024-05-22T13:07:45,330 !! 2024-05-22T13:07:45,331 self.initialize_options() 2024-05-22T13:07:45,350 installing to build/bdist.linux-armv7l/wheel 2024-05-22T13:07:45,351 running install 2024-05-22T13:07:45,375 running install_lib 2024-05-22T13:07:45,401 creating build/bdist.linux-armv7l 2024-05-22T13:07:45,401 creating build/bdist.linux-armv7l/wheel 2024-05-22T13:07:45,403 creating build/bdist.linux-armv7l/wheel/dendropy 2024-05-22T13:07:45,405 creating build/bdist.linux-armv7l/wheel/dendropy/calculate 2024-05-22T13:07:45,406 copying build/lib/dendropy/calculate/combinatorics.py -> build/bdist.linux-armv7l/wheel/dendropy/calculate 2024-05-22T13:07:45,408 copying build/lib/dendropy/calculate/treemeasure.py -> build/bdist.linux-armv7l/wheel/dendropy/calculate 2024-05-22T13:07:45,410 copying build/lib/dendropy/calculate/treescore.py -> build/bdist.linux-armv7l/wheel/dendropy/calculate 2024-05-22T13:07:45,412 copying build/lib/dendropy/calculate/phylogeneticdistance.py -> build/bdist.linux-armv7l/wheel/dendropy/calculate 2024-05-22T13:07:45,415 copying build/lib/dendropy/calculate/__init__.py -> build/bdist.linux-armv7l/wheel/dendropy/calculate 2024-05-22T13:07:45,417 copying build/lib/dendropy/calculate/statistics.py -> build/bdist.linux-armv7l/wheel/dendropy/calculate 2024-05-22T13:07:45,419 copying build/lib/dendropy/calculate/probability.py -> build/bdist.linux-armv7l/wheel/dendropy/calculate 2024-05-22T13:07:45,422 copying build/lib/dendropy/calculate/popgenstat.py -> build/bdist.linux-armv7l/wheel/dendropy/calculate 2024-05-22T13:07:45,424 copying build/lib/dendropy/calculate/treecompare.py -> build/bdist.linux-armv7l/wheel/dendropy/calculate 2024-05-22T13:07:45,427 copying build/lib/dendropy/calculate/treesum.py -> build/bdist.linux-armv7l/wheel/dendropy/calculate 2024-05-22T13:07:45,430 copying build/lib/dendropy/calculate/mathfn.py -> build/bdist.linux-armv7l/wheel/dendropy/calculate 2024-05-22T13:07:45,431 copying build/lib/dendropy/calculate/profiledistance.py -> build/bdist.linux-armv7l/wheel/dendropy/calculate 2024-05-22T13:07:45,434 creating build/bdist.linux-armv7l/wheel/dendropy/simulate 2024-05-22T13:07:45,435 copying build/lib/dendropy/simulate/popgensim.py -> build/bdist.linux-armv7l/wheel/dendropy/simulate 2024-05-22T13:07:45,437 copying build/lib/dendropy/simulate/treesim.py -> build/bdist.linux-armv7l/wheel/dendropy/simulate 2024-05-22T13:07:45,440 copying build/lib/dendropy/simulate/__init__.py -> build/bdist.linux-armv7l/wheel/dendropy/simulate 2024-05-22T13:07:45,442 copying build/lib/dendropy/simulate/charsim.py -> build/bdist.linux-armv7l/wheel/dendropy/simulate 2024-05-22T13:07:45,444 creating build/bdist.linux-armv7l/wheel/dendropy/datamodel 2024-05-22T13:07:45,444 copying build/lib/dendropy/datamodel/charmatrixmodel.py -> build/bdist.linux-armv7l/wheel/dendropy/datamodel 2024-05-22T13:07:45,448 copying build/lib/dendropy/datamodel/charstatemodel.py -> build/bdist.linux-armv7l/wheel/dendropy/datamodel 2024-05-22T13:07:45,453 copying build/lib/dendropy/datamodel/datasetmodel.py -> build/bdist.linux-armv7l/wheel/dendropy/datamodel 2024-05-22T13:07:45,455 copying build/lib/dendropy/datamodel/__init__.py -> build/bdist.linux-armv7l/wheel/dendropy/datamodel 2024-05-22T13:07:45,458 creating build/bdist.linux-armv7l/wheel/dendropy/datamodel/treemodel 2024-05-22T13:07:45,459 copying build/lib/dendropy/datamodel/treemodel/_node.py -> build/bdist.linux-armv7l/wheel/dendropy/datamodel/treemodel 2024-05-22T13:07:45,463 copying build/lib/dendropy/datamodel/treemodel/_edge.py -> build/bdist.linux-armv7l/wheel/dendropy/datamodel/treemodel 2024-05-22T13:07:45,465 copying build/lib/dendropy/datamodel/treemodel/_bipartition.py -> build/bdist.linux-armv7l/wheel/dendropy/datamodel/treemodel 2024-05-22T13:07:45,467 copying build/lib/dendropy/datamodel/treemodel/__init__.py -> build/bdist.linux-armv7l/wheel/dendropy/datamodel/treemodel 2024-05-22T13:07:45,469 copying build/lib/dendropy/datamodel/treemodel/_tree.py -> build/bdist.linux-armv7l/wheel/dendropy/datamodel/treemodel 2024-05-22T13:07:45,474 copying build/lib/dendropy/datamodel/taxonmodel.py -> build/bdist.linux-armv7l/wheel/dendropy/datamodel 2024-05-22T13:07:45,477 copying build/lib/dendropy/datamodel/basemodel.py -> build/bdist.linux-armv7l/wheel/dendropy/datamodel 2024-05-22T13:07:45,481 copying build/lib/dendropy/datamodel/treecollectionmodel.py -> build/bdist.linux-armv7l/wheel/dendropy/datamodel 2024-05-22T13:07:45,486 creating build/bdist.linux-armv7l/wheel/dendropy/legacy 2024-05-22T13:07:45,487 copying build/lib/dendropy/legacy/ncbi.py -> build/bdist.linux-armv7l/wheel/dendropy/legacy 2024-05-22T13:07:45,490 copying build/lib/dendropy/legacy/popgensim.py -> build/bdist.linux-armv7l/wheel/dendropy/legacy 2024-05-22T13:07:45,492 copying build/lib/dendropy/legacy/coalescent.py -> build/bdist.linux-armv7l/wheel/dendropy/legacy 2024-05-22T13:07:45,494 copying build/lib/dendropy/legacy/treecalc.py -> build/bdist.linux-armv7l/wheel/dendropy/legacy 2024-05-22T13:07:45,496 copying build/lib/dendropy/legacy/treesim.py -> build/bdist.linux-armv7l/wheel/dendropy/legacy 2024-05-22T13:07:45,498 copying build/lib/dendropy/legacy/treemanip.py -> build/bdist.linux-armv7l/wheel/dendropy/legacy 2024-05-22T13:07:45,500 copying build/lib/dendropy/legacy/__init__.py -> build/bdist.linux-armv7l/wheel/dendropy/legacy 2024-05-22T13:07:45,502 copying build/lib/dendropy/legacy/continuous.py -> build/bdist.linux-armv7l/wheel/dendropy/legacy 2024-05-22T13:07:45,504 copying build/lib/dendropy/legacy/seqsim.py -> build/bdist.linux-armv7l/wheel/dendropy/legacy 2024-05-22T13:07:45,506 copying build/lib/dendropy/legacy/reconcile.py -> build/bdist.linux-armv7l/wheel/dendropy/legacy 2024-05-22T13:07:45,508 copying build/lib/dendropy/legacy/popgenstat.py -> build/bdist.linux-armv7l/wheel/dendropy/legacy 2024-05-22T13:07:45,510 copying build/lib/dendropy/legacy/seqmodel.py -> build/bdist.linux-armv7l/wheel/dendropy/legacy 2024-05-22T13:07:45,512 copying build/lib/dendropy/legacy/treesum.py -> build/bdist.linux-armv7l/wheel/dendropy/legacy 2024-05-22T13:07:45,514 copying build/lib/dendropy/legacy/treesplit.py -> build/bdist.linux-armv7l/wheel/dendropy/legacy 2024-05-22T13:07:45,516 creating build/bdist.linux-armv7l/wheel/dendropy/utility 2024-05-22T13:07:45,518 copying build/lib/dendropy/utility/urlio.py -> build/bdist.linux-armv7l/wheel/dendropy/utility 2024-05-22T13:07:45,520 copying build/lib/dendropy/utility/debug.py -> build/bdist.linux-armv7l/wheel/dendropy/utility 2024-05-22T13:07:45,522 copying build/lib/dendropy/utility/error.py -> build/bdist.linux-armv7l/wheel/dendropy/utility 2024-05-22T13:07:45,524 copying build/lib/dendropy/utility/timeprocessing.py -> build/bdist.linux-armv7l/wheel/dendropy/utility 2024-05-22T13:07:45,526 copying build/lib/dendropy/utility/constants.py -> build/bdist.linux-armv7l/wheel/dendropy/utility 2024-05-22T13:07:45,527 copying build/lib/dendropy/utility/metavar.py -> build/bdist.linux-armv7l/wheel/dendropy/utility 2024-05-22T13:07:45,529 copying build/lib/dendropy/utility/processio.py -> build/bdist.linux-armv7l/wheel/dendropy/utility 2024-05-22T13:07:45,531 copying build/lib/dendropy/utility/deprecate.py -> build/bdist.linux-armv7l/wheel/dendropy/utility 2024-05-22T13:07:45,533 copying build/lib/dendropy/utility/terminal.py -> build/bdist.linux-armv7l/wheel/dendropy/utility 2024-05-22T13:07:45,535 copying build/lib/dendropy/utility/bitprocessing.py -> build/bdist.linux-armv7l/wheel/dendropy/utility 2024-05-22T13:07:45,537 copying build/lib/dendropy/utility/container.py -> build/bdist.linux-armv7l/wheel/dendropy/utility 2024-05-22T13:07:45,540 copying build/lib/dendropy/utility/messaging.py -> build/bdist.linux-armv7l/wheel/dendropy/utility 2024-05-22T13:07:45,542 copying build/lib/dendropy/utility/__init__.py -> build/bdist.linux-armv7l/wheel/dendropy/utility 2024-05-22T13:07:45,544 creating build/bdist.linux-armv7l/wheel/dendropy/utility/libexec 2024-05-22T13:07:45,545 copying build/lib/dendropy/utility/libexec/__init__.py -> build/bdist.linux-armv7l/wheel/dendropy/utility/libexec 2024-05-22T13:07:45,547 copying build/lib/dendropy/utility/bibtex.py -> build/bdist.linux-armv7l/wheel/dendropy/utility 2024-05-22T13:07:45,549 copying build/lib/dendropy/utility/cli.py -> build/bdist.linux-armv7l/wheel/dendropy/utility 2024-05-22T13:07:45,551 copying build/lib/dendropy/utility/textprocessing.py -> build/bdist.linux-armv7l/wheel/dendropy/utility 2024-05-22T13:07:45,554 copying build/lib/dendropy/utility/filesys.py -> build/bdist.linux-armv7l/wheel/dendropy/utility 2024-05-22T13:07:45,557 copying build/lib/dendropy/utility/vcsinfo.py -> build/bdist.linux-armv7l/wheel/dendropy/utility 2024-05-22T13:07:45,560 creating build/bdist.linux-armv7l/wheel/dendropy/interop 2024-05-22T13:07:45,561 copying build/lib/dendropy/interop/ape.py -> build/bdist.linux-armv7l/wheel/dendropy/interop 2024-05-22T13:07:45,563 copying build/lib/dendropy/interop/itol.py -> build/bdist.linux-armv7l/wheel/dendropy/interop 2024-05-22T13:07:45,566 copying build/lib/dendropy/interop/gbif.py -> build/bdist.linux-armv7l/wheel/dendropy/interop 2024-05-22T13:07:45,568 copying build/lib/dendropy/interop/ete.py -> build/bdist.linux-armv7l/wheel/dendropy/interop 2024-05-22T13:07:45,570 copying build/lib/dendropy/interop/genbank.py -> build/bdist.linux-armv7l/wheel/dendropy/interop 2024-05-22T13:07:45,573 copying build/lib/dendropy/interop/muscle.py -> build/bdist.linux-armv7l/wheel/dendropy/interop 2024-05-22T13:07:45,575 copying build/lib/dendropy/interop/rspr.py -> build/bdist.linux-armv7l/wheel/dendropy/interop 2024-05-22T13:07:45,577 copying build/lib/dendropy/interop/seqgen.py -> build/bdist.linux-armv7l/wheel/dendropy/interop 2024-05-22T13:07:45,579 copying build/lib/dendropy/interop/raxml.py -> build/bdist.linux-armv7l/wheel/dendropy/interop 2024-05-22T13:07:45,582 copying build/lib/dendropy/interop/biopython.py -> build/bdist.linux-armv7l/wheel/dendropy/interop 2024-05-22T13:07:45,583 copying build/lib/dendropy/interop/paup.py -> build/bdist.linux-armv7l/wheel/dendropy/interop 2024-05-22T13:07:45,586 copying build/lib/dendropy/interop/__init__.py -> build/bdist.linux-armv7l/wheel/dendropy/interop 2024-05-22T13:07:45,588 copying build/lib/dendropy/interop/rstats.py -> build/bdist.linux-armv7l/wheel/dendropy/interop 2024-05-22T13:07:45,590 copying build/lib/dendropy/interop/entrez.py -> build/bdist.linux-armv7l/wheel/dendropy/interop 2024-05-22T13:07:45,592 creating build/bdist.linux-armv7l/wheel/dendropy/model 2024-05-22T13:07:45,593 copying build/lib/dendropy/model/coalescent.py -> build/bdist.linux-armv7l/wheel/dendropy/model 2024-05-22T13:07:45,595 copying build/lib/dendropy/model/discrete.py -> build/bdist.linux-armv7l/wheel/dendropy/model 2024-05-22T13:07:45,598 copying build/lib/dendropy/model/protractedspeciation.py -> build/bdist.linux-armv7l/wheel/dendropy/model 2024-05-22T13:07:45,601 copying build/lib/dendropy/model/parsimony.py -> build/bdist.linux-armv7l/wheel/dendropy/model 2024-05-22T13:07:45,603 copying build/lib/dendropy/model/__init__.py -> build/bdist.linux-armv7l/wheel/dendropy/model 2024-05-22T13:07:45,605 copying build/lib/dendropy/model/continuous.py -> build/bdist.linux-armv7l/wheel/dendropy/model 2024-05-22T13:07:45,607 copying build/lib/dendropy/model/reconcile.py -> build/bdist.linux-armv7l/wheel/dendropy/model 2024-05-22T13:07:45,610 copying build/lib/dendropy/model/birthdeath.py -> build/bdist.linux-armv7l/wheel/dendropy/model 2024-05-22T13:07:45,614 copying build/lib/dendropy/model/treeshape.py -> build/bdist.linux-armv7l/wheel/dendropy/model 2024-05-22T13:07:45,616 copying build/lib/dendropy/model/multispeciescoalescent.py -> build/bdist.linux-armv7l/wheel/dendropy/model 2024-05-22T13:07:45,618 creating build/bdist.linux-armv7l/wheel/dendropy/application 2024-05-22T13:07:45,619 copying build/lib/dendropy/application/sumtrees.py -> build/bdist.linux-armv7l/wheel/dendropy/application 2024-05-22T13:07:45,624 copying build/lib/dendropy/application/__init__.py -> build/bdist.linux-armv7l/wheel/dendropy/application 2024-05-22T13:07:45,625 copying build/lib/dendropy/application/dendropy_format.py -> build/bdist.linux-armv7l/wheel/dendropy/application 2024-05-22T13:07:45,627 copying build/lib/dendropy/application/sumlabels.py -> build/bdist.linux-armv7l/wheel/dendropy/application 2024-05-22T13:07:45,630 creating build/bdist.linux-armv7l/wheel/dendropy/mathlib 2024-05-22T13:07:45,631 copying build/lib/dendropy/mathlib/__init__.py -> build/bdist.linux-armv7l/wheel/dendropy/mathlib 2024-05-22T13:07:45,633 copying build/lib/dendropy/mathlib/statistics.py -> build/bdist.linux-armv7l/wheel/dendropy/mathlib 2024-05-22T13:07:45,635 copying build/lib/dendropy/mathlib/probability.py -> build/bdist.linux-armv7l/wheel/dendropy/mathlib 2024-05-22T13:07:45,636 copying build/lib/dendropy/mathlib/mathfn.py -> build/bdist.linux-armv7l/wheel/dendropy/mathlib 2024-05-22T13:07:45,638 copying build/lib/dendropy/__init__.py -> build/bdist.linux-armv7l/wheel/dendropy 2024-05-22T13:07:45,640 copying build/lib/dendropy/__main__.py -> build/bdist.linux-armv7l/wheel/dendropy 2024-05-22T13:07:45,643 creating build/bdist.linux-armv7l/wheel/dendropy/dataio 2024-05-22T13:07:45,644 copying build/lib/dendropy/dataio/fastareader.py -> build/bdist.linux-armv7l/wheel/dendropy/dataio 2024-05-22T13:07:45,646 copying build/lib/dendropy/dataio/ioservice.py -> build/bdist.linux-armv7l/wheel/dendropy/dataio 2024-05-22T13:07:45,648 copying build/lib/dendropy/dataio/newickreader.py -> build/bdist.linux-armv7l/wheel/dendropy/dataio 2024-05-22T13:07:45,651 copying build/lib/dendropy/dataio/nexusprocessing.py -> build/bdist.linux-armv7l/wheel/dendropy/dataio 2024-05-22T13:07:45,654 copying build/lib/dendropy/dataio/tokenizer.py -> build/bdist.linux-armv7l/wheel/dendropy/dataio 2024-05-22T13:07:45,656 copying build/lib/dendropy/dataio/newick.py -> build/bdist.linux-armv7l/wheel/dendropy/dataio 2024-05-22T13:07:45,657 copying build/lib/dendropy/dataio/nexusreader.py -> build/bdist.linux-armv7l/wheel/dendropy/dataio 2024-05-22T13:07:45,661 copying build/lib/dendropy/dataio/newickyielder.py -> build/bdist.linux-armv7l/wheel/dendropy/dataio 2024-05-22T13:07:45,662 copying build/lib/dendropy/dataio/nexusyielder.py -> build/bdist.linux-armv7l/wheel/dendropy/dataio 2024-05-22T13:07:45,665 copying build/lib/dendropy/dataio/xmlprocessing.py -> build/bdist.linux-armv7l/wheel/dendropy/dataio 2024-05-22T13:07:45,667 copying build/lib/dendropy/dataio/__init__.py -> build/bdist.linux-armv7l/wheel/dendropy/dataio 2024-05-22T13:07:45,670 copying build/lib/dendropy/dataio/nexmlwriter.py -> build/bdist.linux-armv7l/wheel/dendropy/dataio 2024-05-22T13:07:45,672 copying build/lib/dendropy/dataio/newickwriter.py -> build/bdist.linux-armv7l/wheel/dendropy/dataio 2024-05-22T13:07:45,675 copying build/lib/dendropy/dataio/nexmlyielder.py -> build/bdist.linux-armv7l/wheel/dendropy/dataio 2024-05-22T13:07:45,676 copying build/lib/dendropy/dataio/phylipwriter.py -> build/bdist.linux-armv7l/wheel/dendropy/dataio 2024-05-22T13:07:45,679 copying build/lib/dendropy/dataio/nexuswriter.py -> build/bdist.linux-armv7l/wheel/dendropy/dataio 2024-05-22T13:07:45,682 copying build/lib/dendropy/dataio/nexmlreader.py -> build/bdist.linux-armv7l/wheel/dendropy/dataio 2024-05-22T13:07:45,684 copying build/lib/dendropy/dataio/multiphylipreader.py -> build/bdist.linux-armv7l/wheel/dendropy/dataio 2024-05-22T13:07:45,687 copying build/lib/dendropy/dataio/phylipreader.py -> build/bdist.linux-armv7l/wheel/dendropy/dataio 2024-05-22T13:07:45,690 copying build/lib/dendropy/dataio/fastawriter.py -> build/bdist.linux-armv7l/wheel/dendropy/dataio 2024-05-22T13:07:45,691 running install_egg_info 2024-05-22T13:07:45,724 Copying src/DendroPy.egg-info to build/bdist.linux-armv7l/wheel/DendroPy-4.6.3-py3.11.egg-info 2024-05-22T13:07:45,736 running install_scripts 2024-05-22T13:07:45,751 creating build/bdist.linux-armv7l/wheel/DendroPy-4.6.3.dist-info/WHEEL 2024-05-22T13:07:45,754 creating '/tmp/pip-wheel-gort7a8e/DendroPy-4.6.3-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2024-05-22T13:07:45,757 adding 'dendropy/__init__.py' 2024-05-22T13:07:45,759 adding 'dendropy/__main__.py' 2024-05-22T13:07:45,761 adding 'dendropy/application/__init__.py' 2024-05-22T13:07:45,762 adding 'dendropy/application/dendropy_format.py' 2024-05-22T13:07:45,764 adding 'dendropy/application/sumlabels.py' 2024-05-22T13:07:45,775 adding 'dendropy/application/sumtrees.py' 2024-05-22T13:07:45,778 adding 'dendropy/calculate/__init__.py' 2024-05-22T13:07:45,779 adding 'dendropy/calculate/combinatorics.py' 2024-05-22T13:07:45,780 adding 'dendropy/calculate/mathfn.py' 2024-05-22T13:07:45,787 adding 'dendropy/calculate/phylogeneticdistance.py' 2024-05-22T13:07:45,790 adding 'dendropy/calculate/popgenstat.py' 2024-05-22T13:07:45,792 adding 'dendropy/calculate/probability.py' 2024-05-22T13:07:45,794 adding 'dendropy/calculate/profiledistance.py' 2024-05-22T13:07:45,797 adding 'dendropy/calculate/statistics.py' 2024-05-22T13:07:45,801 adding 'dendropy/calculate/treecompare.py' 2024-05-22T13:07:45,803 adding 'dendropy/calculate/treemeasure.py' 2024-05-22T13:07:45,804 adding 'dendropy/calculate/treescore.py' 2024-05-22T13:07:45,806 adding 'dendropy/calculate/treesum.py' 2024-05-22T13:07:45,809 adding 'dendropy/dataio/__init__.py' 2024-05-22T13:07:45,810 adding 'dendropy/dataio/fastareader.py' 2024-05-22T13:07:45,812 adding 'dendropy/dataio/fastawriter.py' 2024-05-22T13:07:45,814 adding 'dendropy/dataio/ioservice.py' 2024-05-22T13:07:45,816 adding 'dendropy/dataio/multiphylipreader.py' 2024-05-22T13:07:45,817 adding 'dendropy/dataio/newick.py' 2024-05-22T13:07:45,821 adding 'dendropy/dataio/newickreader.py' 2024-05-22T13:07:45,823 adding 'dendropy/dataio/newickwriter.py' 2024-05-22T13:07:45,825 adding 'dendropy/dataio/newickyielder.py' 2024-05-22T13:07:45,829 adding 'dendropy/dataio/nexmlreader.py' 2024-05-22T13:07:45,833 adding 'dendropy/dataio/nexmlwriter.py' 2024-05-22T13:07:45,834 adding 'dendropy/dataio/nexmlyielder.py' 2024-05-22T13:07:45,837 adding 'dendropy/dataio/nexusprocessing.py' 2024-05-22T13:07:45,844 adding 'dendropy/dataio/nexusreader.py' 2024-05-22T13:07:45,847 adding 'dendropy/dataio/nexuswriter.py' 2024-05-22T13:07:45,849 adding 'dendropy/dataio/nexusyielder.py' 2024-05-22T13:07:45,851 adding 'dendropy/dataio/phylipreader.py' 2024-05-22T13:07:45,853 adding 'dendropy/dataio/phylipwriter.py' 2024-05-22T13:07:45,855 adding 'dendropy/dataio/tokenizer.py' 2024-05-22T13:07:45,856 adding 'dendropy/dataio/xmlprocessing.py' 2024-05-22T13:07:45,858 adding 'dendropy/datamodel/__init__.py' 2024-05-22T13:07:45,864 adding 'dendropy/datamodel/basemodel.py' 2024-05-22T13:07:45,873 adding 'dendropy/datamodel/charmatrixmodel.py' 2024-05-22T13:07:45,879 adding 'dendropy/datamodel/charstatemodel.py' 2024-05-22T13:07:45,883 adding 'dendropy/datamodel/datasetmodel.py' 2024-05-22T13:07:45,892 adding 'dendropy/datamodel/taxonmodel.py' 2024-05-22T13:07:45,905 adding 'dendropy/datamodel/treecollectionmodel.py' 2024-05-22T13:07:45,907 adding 'dendropy/datamodel/treemodel/__init__.py' 2024-05-22T13:07:45,910 adding 'dendropy/datamodel/treemodel/_bipartition.py' 2024-05-22T13:07:45,912 adding 'dendropy/datamodel/treemodel/_edge.py' 2024-05-22T13:07:45,919 adding 'dendropy/datamodel/treemodel/_node.py' 2024-05-22T13:07:45,937 adding 'dendropy/datamodel/treemodel/_tree.py' 2024-05-22T13:07:45,940 adding 'dendropy/interop/__init__.py' 2024-05-22T13:07:45,942 adding 'dendropy/interop/ape.py' 2024-05-22T13:07:45,944 adding 'dendropy/interop/biopython.py' 2024-05-22T13:07:45,945 adding 'dendropy/interop/entrez.py' 2024-05-22T13:07:45,947 adding 'dendropy/interop/ete.py' 2024-05-22T13:07:45,949 adding 'dendropy/interop/gbif.py' 2024-05-22T13:07:45,952 adding 'dendropy/interop/genbank.py' 2024-05-22T13:07:45,955 adding 'dendropy/interop/itol.py' 2024-05-22T13:07:45,956 adding 'dendropy/interop/muscle.py' 2024-05-22T13:07:45,960 adding 'dendropy/interop/paup.py' 2024-05-22T13:07:45,965 adding 'dendropy/interop/raxml.py' 2024-05-22T13:07:45,967 adding 'dendropy/interop/rspr.py' 2024-05-22T13:07:45,968 adding 'dendropy/interop/rstats.py' 2024-05-22T13:07:45,970 adding 'dendropy/interop/seqgen.py' 2024-05-22T13:07:45,972 adding 'dendropy/legacy/__init__.py' 2024-05-22T13:07:45,973 adding 'dendropy/legacy/coalescent.py' 2024-05-22T13:07:45,975 adding 'dendropy/legacy/continuous.py' 2024-05-22T13:07:45,977 adding 'dendropy/legacy/ncbi.py' 2024-05-22T13:07:45,978 adding 'dendropy/legacy/popgensim.py' 2024-05-22T13:07:45,979 adding 'dendropy/legacy/popgenstat.py' 2024-05-22T13:07:45,981 adding 'dendropy/legacy/reconcile.py' 2024-05-22T13:07:45,982 adding 'dendropy/legacy/seqmodel.py' 2024-05-22T13:07:45,984 adding 'dendropy/legacy/seqsim.py' 2024-05-22T13:07:45,985 adding 'dendropy/legacy/treecalc.py' 2024-05-22T13:07:45,986 adding 'dendropy/legacy/treemanip.py' 2024-05-22T13:07:45,988 adding 'dendropy/legacy/treesim.py' 2024-05-22T13:07:45,989 adding 'dendropy/legacy/treesplit.py' 2024-05-22T13:07:45,991 adding 'dendropy/legacy/treesum.py' 2024-05-22T13:07:45,993 adding 'dendropy/mathlib/__init__.py' 2024-05-22T13:07:45,994 adding 'dendropy/mathlib/mathfn.py' 2024-05-22T13:07:45,995 adding 'dendropy/mathlib/probability.py' 2024-05-22T13:07:45,997 adding 'dendropy/mathlib/statistics.py' 2024-05-22T13:07:45,999 adding 'dendropy/model/__init__.py' 2024-05-22T13:07:46,007 adding 'dendropy/model/birthdeath.py' 2024-05-22T13:07:46,011 adding 'dendropy/model/coalescent.py' 2024-05-22T13:07:46,014 adding 'dendropy/model/continuous.py' 2024-05-22T13:07:46,017 adding 'dendropy/model/discrete.py' 2024-05-22T13:07:46,019 adding 'dendropy/model/multispeciescoalescent.py' 2024-05-22T13:07:46,021 adding 'dendropy/model/parsimony.py' 2024-05-22T13:07:46,026 adding 'dendropy/model/protractedspeciation.py' 2024-05-22T13:07:46,030 adding 'dendropy/model/reconcile.py' 2024-05-22T13:07:46,031 adding 'dendropy/model/treeshape.py' 2024-05-22T13:07:46,033 adding 'dendropy/simulate/__init__.py' 2024-05-22T13:07:46,034 adding 'dendropy/simulate/charsim.py' 2024-05-22T13:07:46,036 adding 'dendropy/simulate/popgensim.py' 2024-05-22T13:07:46,037 adding 'dendropy/simulate/treesim.py' 2024-05-22T13:07:46,039 adding 'dendropy/utility/__init__.py' 2024-05-22T13:07:46,041 adding 'dendropy/utility/bibtex.py' 2024-05-22T13:07:46,043 adding 'dendropy/utility/bitprocessing.py' 2024-05-22T13:07:46,044 adding 'dendropy/utility/cli.py' 2024-05-22T13:07:46,046 adding 'dendropy/utility/constants.py' 2024-05-22T13:07:46,051 adding 'dendropy/utility/container.py' 2024-05-22T13:07:46,052 adding 'dendropy/utility/debug.py' 2024-05-22T13:07:46,054 adding 'dendropy/utility/deprecate.py' 2024-05-22T13:07:46,056 adding 'dendropy/utility/error.py' 2024-05-22T13:07:46,058 adding 'dendropy/utility/filesys.py' 2024-05-22T13:07:46,059 adding 'dendropy/utility/messaging.py' 2024-05-22T13:07:46,061 adding 'dendropy/utility/metavar.py' 2024-05-22T13:07:46,062 adding 'dendropy/utility/processio.py' 2024-05-22T13:07:46,064 adding 'dendropy/utility/terminal.py' 2024-05-22T13:07:46,065 adding 'dendropy/utility/textprocessing.py' 2024-05-22T13:07:46,066 adding 'dendropy/utility/timeprocessing.py' 2024-05-22T13:07:46,068 adding 'dendropy/utility/urlio.py' 2024-05-22T13:07:46,069 adding 'dendropy/utility/vcsinfo.py' 2024-05-22T13:07:46,072 adding 'dendropy/utility/libexec/__init__.py' 2024-05-22T13:07:46,073 adding 'DendroPy-4.6.3.dist-info/AUTHORS.rst' 2024-05-22T13:07:46,074 adding 'DendroPy-4.6.3.dist-info/LICENSE.rst' 2024-05-22T13:07:46,075 adding 'DendroPy-4.6.3.dist-info/METADATA' 2024-05-22T13:07:46,076 adding 'DendroPy-4.6.3.dist-info/WHEEL' 2024-05-22T13:07:46,077 adding 'DendroPy-4.6.3.dist-info/entry_points.txt' 2024-05-22T13:07:46,078 adding 'DendroPy-4.6.3.dist-info/top_level.txt' 2024-05-22T13:07:46,081 adding 'DendroPy-4.6.3.dist-info/RECORD' 2024-05-22T13:07:46,089 removing build/bdist.linux-armv7l/wheel 2024-05-22T13:07:46,232 Building wheel for dendropy (setup.py): finished with status 'done' 2024-05-22T13:07:46,239 Created wheel for dendropy: filename=DendroPy-4.6.3-py3-none-any.whl size=459069 sha256=55d64c6747ef5feb8125c6b3ba58937d2c93874d1ae798501c4b5a3d6cd56cc2 2024-05-22T13:07:46,240 Stored in directory: /tmp/pip-ephem-wheel-cache-_tc5_ylu/wheels/20/0a/63/59b5f089530b7e7e2bb8ad914b462e6a152626a7cfed317882 2024-05-22T13:07:46,254 Successfully built dendropy 2024-05-22T13:07:46,268 Removed build tracker: '/tmp/pip-build-tracker-mn9_i_rz'