2024-05-22T13:10:33,483 Created temporary directory: /tmp/pip-build-tracker-sx_fx6be
2024-05-22T13:10:33,484 Initialized build tracking at /tmp/pip-build-tracker-sx_fx6be
2024-05-22T13:10:33,485 Created build tracker: /tmp/pip-build-tracker-sx_fx6be
2024-05-22T13:10:33,485 Entered build tracker: /tmp/pip-build-tracker-sx_fx6be
2024-05-22T13:10:33,486 Created temporary directory: /tmp/pip-wheel-7ws1vj7u
2024-05-22T13:10:33,489 Created temporary directory: /tmp/pip-ephem-wheel-cache-6j4_3kjd
2024-05-22T13:10:33,512 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2024-05-22T13:10:33,515 2 location(s) to search for versions of dendropy:
2024-05-22T13:10:33,515 * https://pypi.org/simple/dendropy/
2024-05-22T13:10:33,515 * https://www.piwheels.org/simple/dendropy/
2024-05-22T13:10:33,516 Fetching project page and analyzing links: https://pypi.org/simple/dendropy/
2024-05-22T13:10:33,517 Getting page https://pypi.org/simple/dendropy/
2024-05-22T13:10:33,518 Found index url https://pypi.org/simple/
2024-05-22T13:10:33,654 Fetched page https://pypi.org/simple/dendropy/ as application/vnd.pypi.simple.v1+json
2024-05-22T13:10:33,660   Found link https://files.pythonhosted.org/packages/03/48/8379b3e170d60052da7ccf3387549af17d46808a39062fbb234df3038fa0/DendroPy-3.7.0.tar.gz (from https://pypi.org/simple/dendropy/), version: 3.7.0
2024-05-22T13:10:33,661   Found link https://files.pythonhosted.org/packages/17/0a/914df0e24dc378acdd9cb1705c1fcfcf15dd1da8992de567a4cce85bc31e/DendroPy-3.7.1.tar.gz (from https://pypi.org/simple/dendropy/), version: 3.7.1
2024-05-22T13:10:33,662   Found link https://files.pythonhosted.org/packages/a2/f5/5c4fb1cde35799eeacb35ac289c271371a0c0fd3197548fab7e184900cc7/DendroPy-3.8.0.tar.gz (from https://pypi.org/simple/dendropy/), version: 3.8.0
2024-05-22T13:10:33,662   Found link https://files.pythonhosted.org/packages/95/73/7b1084d03e025b27c79342d6935810969edb86677ef3e5eb1f9e5aec1e6f/DendroPy-3.8.1.tar.gz (from https://pypi.org/simple/dendropy/), version: 3.8.1
2024-05-22T13:10:33,663   Found link https://files.pythonhosted.org/packages/18/2e/141c0d6a99905b9be3256aae6a87504f14853b20e40a6d89c7c4c465769d/DendroPy-3.9.0.tar.gz (from https://pypi.org/simple/dendropy/), version: 3.9.0
2024-05-22T13:10:33,664   Found link https://files.pythonhosted.org/packages/7e/08/a968b51274c8476084521f97af4e8fadd09a6b42a727141f502cc33767c5/DendroPy-3.10.0.tar.gz (from https://pypi.org/simple/dendropy/), version: 3.10.0
2024-05-22T13:10:33,665   Found link https://files.pythonhosted.org/packages/3a/26/552efe612d37cff025f1dd1350eb643edd6dda1cb628d7cbe572e343a049/DendroPy-3.10.1.tar.gz (from https://pypi.org/simple/dendropy/), version: 3.10.1
2024-05-22T13:10:33,665   Found link https://files.pythonhosted.org/packages/0f/3e/5549b668d04241c77c8f5b26f0c94a87ad93b6b9089fc6bcd510eba5d5f4/DendroPy-3.11.0.tar.gz (from https://pypi.org/simple/dendropy/), version: 3.11.0
2024-05-22T13:10:33,666   Found link https://files.pythonhosted.org/packages/43/22/69b7713b094697f8a432abe96c44a155519ef67b3c31221de32f4c3d5fa5/DendroPy-3.12.0.tar.gz (from https://pypi.org/simple/dendropy/), version: 3.12.0
2024-05-22T13:10:33,667   Found link https://files.pythonhosted.org/packages/5f/ae/14c92b087632944149cca61ec8daf41eee0083d0fad30c9248edb7e227d2/DendroPy-3.12.2.tar.gz (from https://pypi.org/simple/dendropy/), version: 3.12.2
2024-05-22T13:10:33,667   Found link https://files.pythonhosted.org/packages/3d/c0/e0a20d1cf4b268757842a03f36452095fccb8eae5ebd541548e29c6ca1e3/DendroPy-3.12.3.tar.gz (from https://pypi.org/simple/dendropy/), version: 3.12.3
2024-05-22T13:10:33,668   Found link https://files.pythonhosted.org/packages/f0/d3/e0180bf1a8d599b8f847ab7a1b19fe4d7a95b3613c57b57108e2a48bb59f/DendroPy-4.0.0.rc1.tar.gz (from https://pypi.org/simple/dendropy/), version: 4.0.0.rc1
2024-05-22T13:10:33,669   Found link https://files.pythonhosted.org/packages/55/dd/0d59b7bde4b230fadb999bc84cc45668a53733cb63e4aacf7e6ab4a9e175/DendroPy-4.0.0.tar.gz (from https://pypi.org/simple/dendropy/), version: 4.0.0
2024-05-22T13:10:33,670   Found link https://files.pythonhosted.org/packages/52/ba/02652626ed0d56afadc990e6540d998217831d856170ff0c68c3afbef866/DendroPy-4.0.1.tar.gz (from https://pypi.org/simple/dendropy/), version: 4.0.1
2024-05-22T13:10:33,670   Found link https://files.pythonhosted.org/packages/62/10/117c87b76f5f84d4559bd7ad25af04f11369ef8267f3c8e7d62769efc85d/DendroPy-4.0.2.tar.gz (from https://pypi.org/simple/dendropy/), version: 4.0.2
2024-05-22T13:10:33,671   Found link https://files.pythonhosted.org/packages/66/0b/72ca62a6e87ddb9b70cac2cf1fc199ca00127fc168c52bcbcbf30cfb5947/DendroPy-4.0.3.tar.gz (from https://pypi.org/simple/dendropy/), version: 4.0.3
2024-05-22T13:10:33,672   Found link https://files.pythonhosted.org/packages/65/3a/19556a58c560de488dffbf3c7fe7c9ed34c1a6223f0dfe971224a42aaf39/DendroPy-4.1.0.tar.gz (from https://pypi.org/simple/dendropy/), version: 4.1.0
2024-05-22T13:10:33,672   Found link https://files.pythonhosted.org/packages/e6/5a/d48c8d3f8100efd5eb6e6142f28bf1c13200e08882e59596369035ebc138/DendroPy-4.2.0.tar.gz (from https://pypi.org/simple/dendropy/), version: 4.2.0
2024-05-22T13:10:33,673   Found link https://files.pythonhosted.org/packages/58/14/d4559893d72675b322c1d60229ef3490bc5c2f5b28c5cc339956aaf8f507/DendroPy-4.3.0.tar.gz (from https://pypi.org/simple/dendropy/), version: 4.3.0
2024-05-22T13:10:33,673   Found link https://files.pythonhosted.org/packages/f5/21/17e4fbb1c2a68421eec43930b1e118660c7483229f1b28ba4402e8856884/DendroPy-4.4.0.tar.gz (from https://pypi.org/simple/dendropy/), version: 4.4.0
2024-05-22T13:10:33,674   Found link https://files.pythonhosted.org/packages/e0/f3/222e939e250e71234031d182e58704fff1c3296140f91f70d7ef8b3e17a6/DendroPy-4.5.1.tar.gz (from https://pypi.org/simple/dendropy/), version: 4.5.1
2024-05-22T13:10:33,675   Found link https://files.pythonhosted.org/packages/f9/10/125c181b1d97ffc4661a60ec897cfe058dc46cb53900d807819464c3510f/DendroPy-4.5.2.tar.gz (from https://pypi.org/simple/dendropy/), version: 4.5.2
2024-05-22T13:10:33,675   Skipping link: No binaries permitted for dendropy: https://files.pythonhosted.org/packages/b0/c0/841e46da39a4dae07a5cd4e7a1c9472acbdd623f820b125b5995dd342c9a/DendroPy-4.6.0-py3-none-any.whl (from https://pypi.org/simple/dendropy/)
2024-05-22T13:10:33,676   Found link https://files.pythonhosted.org/packages/8a/88/864aa93d31dd210e5b9bd79cfb3c9ddaf0bfab9b70dd212fb8247ab72f46/DendroPy-4.6.0.tar.gz (from https://pypi.org/simple/dendropy/), version: 4.6.0
2024-05-22T13:10:33,677   Skipping link: No binaries permitted for dendropy: https://files.pythonhosted.org/packages/7c/3b/f880fd07cb79a46ca838e46ba021fcdaa464bb21e2a9264a7afe77046a88/DendroPy-4.6.1-py3-none-any.whl (from https://pypi.org/simple/dendropy/)
2024-05-22T13:10:33,677   Found link https://files.pythonhosted.org/packages/35/fc/0ff301d0f2484b61f2cc46cfd7649c530cad6313c7f7a695f8cabff8a061/DendroPy-4.6.1.tar.gz (from https://pypi.org/simple/dendropy/), version: 4.6.1
2024-05-22T13:10:33,678   Skipping link: No binaries permitted for dendropy: https://files.pythonhosted.org/packages/a9/70/c715b8467b7cd08a847ad303ce8a2d236e001a526f37179fe77e503602cb/DendroPy-4.6.3-py3-none-any.whl (from https://pypi.org/simple/dendropy/)
2024-05-22T13:10:33,679   Found link https://files.pythonhosted.org/packages/52/f2/c8524894d8bbd5cfb4eca7c350e4407137bd11a752a152c62617ce6f6b76/DendroPy-4.6.3.tar.gz (from https://pypi.org/simple/dendropy/), version: 4.6.3
2024-05-22T13:10:33,679   Skipping link: No binaries permitted for dendropy: https://files.pythonhosted.org/packages/f1/f5/fb4483829a7a9b08c974281d2519d110b69284a43dec7ae320e9971fe4f5/DendroPy-4.6.4-py3-none-any.whl (from https://pypi.org/simple/dendropy/)
2024-05-22T13:10:33,680   Found link https://files.pythonhosted.org/packages/29/7a/0e09e052a746c9e97e45d6e0803e705e13426aa01a13ab845f6108ea4fd5/DendroPy-4.6.4.tar.gz (from https://pypi.org/simple/dendropy/), version: 4.6.4
2024-05-22T13:10:33,681   Skipping link: No binaries permitted for dendropy: https://files.pythonhosted.org/packages/54/2a/e95f42bcc16806f5f5ed49ed8b613830c3831e8a1ecea845756b882672e1/DendroPy-5.0.0-py3-none-any.whl (from https://pypi.org/simple/dendropy/) (requires-python:>=3.6)
2024-05-22T13:10:33,682   Found link https://files.pythonhosted.org/packages/96/33/c3a06df7aec829e8b79b91503708d750d9c4842cfc4377ae215c1e61d97d/DendroPy-5.0.0.tar.gz (from https://pypi.org/simple/dendropy/) (requires-python:>=3.6), version: 5.0.0
2024-05-22T13:10:33,683 Fetching project page and analyzing links: https://www.piwheels.org/simple/dendropy/
2024-05-22T13:10:33,683 Getting page https://www.piwheels.org/simple/dendropy/
2024-05-22T13:10:33,685 Found index url https://www.piwheels.org/simple/
2024-05-22T13:10:33,850 Fetched page https://www.piwheels.org/simple/dendropy/ as text/html
2024-05-22T13:10:33,854   Skipping link: No binaries permitted for dendropy: https://www.piwheels.org/simple/dendropy/DendroPy-4.6.3-py3-none-any.whl#sha256=55d64c6747ef5feb8125c6b3ba58937d2c93874d1ae798501c4b5a3d6cd56cc2 (from https://www.piwheels.org/simple/dendropy/)
2024-05-22T13:10:33,855   Skipping link: No binaries permitted for dendropy: https://www.piwheels.org/simple/dendropy/DendroPy-4.6.1-py3-none-any.whl#sha256=da58df7fced8722b607b168cb9ffec744a299b5ebdebb62786835351122e5236 (from https://www.piwheels.org/simple/dendropy/)
2024-05-22T13:10:33,856   Skipping link: No binaries permitted for dendropy: https://www.piwheels.org/simple/dendropy/DendroPy-4.6.0-py3-none-any.whl#sha256=967847ceda8c3c50c9c82bf0b17ad1cfed383857502a32878e1870fde0b9f662 (from https://www.piwheels.org/simple/dendropy/)
2024-05-22T13:10:33,856   Skipping link: No binaries permitted for dendropy: https://www.piwheels.org/simple/dendropy/DendroPy-4.5.2-py3-none-any.whl#sha256=7492efc1d60e0d280a9effe9093dd14da694300275c2dbc2c3cd116390521bc3 (from https://www.piwheels.org/simple/dendropy/)
2024-05-22T13:10:33,857   Skipping link: No binaries permitted for dendropy: https://www.piwheels.org/simple/dendropy/DendroPy-4.5.1-py3-none-any.whl#sha256=0113d22b31642c3c63327d0eab46f2aff2079181bb537c2007796802874bed73 (from https://www.piwheels.org/simple/dendropy/)
2024-05-22T13:10:33,857   Skipping link: No binaries permitted for dendropy: https://www.piwheels.org/simple/dendropy/DendroPy-4.4.0-py3-none-any.whl#sha256=04bb1c1125a9435d6f61e956aaa59a6789d16640f9371e367f6182331570eeb9 (from https://www.piwheels.org/simple/dendropy/)
2024-05-22T13:10:33,857   Skipping link: No binaries permitted for dendropy: https://www.piwheels.org/simple/dendropy/DendroPy-4.3.0-py3-none-any.whl#sha256=b762edba2a883b8a9549d498742e7ffe9126f33855d270fc0fa42c0ffd77e224 (from https://www.piwheels.org/simple/dendropy/)
2024-05-22T13:10:33,858   Skipping link: No binaries permitted for dendropy: https://www.piwheels.org/simple/dendropy/DendroPy-4.2.0-py3-none-any.whl#sha256=b708e09e2b790f482496fd2e17b5159e212994a6d7d234771e2c9e5e208aa55e (from https://www.piwheels.org/simple/dendropy/)
2024-05-22T13:10:33,859   Skipping link: No binaries permitted for dendropy: https://www.piwheels.org/simple/dendropy/DendroPy-4.1.0-py3-none-any.whl#sha256=1b13aa093d01409bfb95728a68dbff117529dc40cd5ac6fa4d4fc30756ef5357 (from https://www.piwheels.org/simple/dendropy/)
2024-05-22T13:10:33,859   Skipping link: No binaries permitted for dendropy: https://www.piwheels.org/simple/dendropy/DendroPy-4.0.3-py3-none-any.whl#sha256=eea9ba2017437bada349db5b12b6d9c8c6dfcbfea1832bac2a862b3c5503ceb3 (from https://www.piwheels.org/simple/dendropy/)
2024-05-22T13:10:33,860   Skipping link: No binaries permitted for dendropy: https://www.piwheels.org/simple/dendropy/DendroPy-4.0.2-py3-none-any.whl#sha256=81648919d17fb5fdc36f4053aff572b4a2d358a189d2462e15aab8760eb71d1a (from https://www.piwheels.org/simple/dendropy/)
2024-05-22T13:10:33,860   Skipping link: No binaries permitted for dendropy: https://www.piwheels.org/simple/dendropy/DendroPy-4.0.1-py3-none-any.whl#sha256=4ba8a912afd561e3116cdfbcd6c168cafc69eec3339bfdb79858e93000402410 (from https://www.piwheels.org/simple/dendropy/)
2024-05-22T13:10:33,861   Skipping link: No binaries permitted for dendropy: https://www.piwheels.org/simple/dendropy/DendroPy-4.0.0-py3-none-any.whl#sha256=4687108db4e411473e5ccce4ec9a99fc10ad22b8da4c6e817154202a3e6cc0e9 (from https://www.piwheels.org/simple/dendropy/)
2024-05-22T13:10:33,862   Skipping link: No binaries permitted for dendropy: https://www.piwheels.org/simple/dendropy/DendroPy-4.0.0rc1-py3-none-any.whl#sha256=0310d7072108356c0655941033b16778503a2c6ec2d84ac1eeb88a41eb92a543 (from https://www.piwheels.org/simple/dendropy/)
2024-05-22T13:10:33,864 Skipping link: not a file: https://www.piwheels.org/simple/dendropy/
2024-05-22T13:10:33,865 Skipping link: not a file: https://pypi.org/simple/dendropy/
2024-05-22T13:10:33,889 Given no hashes to check 1 links for project 'dendropy': discarding no candidates
2024-05-22T13:10:33,909 Collecting dendropy==4.6.4
2024-05-22T13:10:33,911   Created temporary directory: /tmp/pip-unpack-6cq_vt0w
2024-05-22T13:10:34,124   Downloading DendroPy-4.6.4.tar.gz (15.2 MB)
2024-05-22T13:10:40,680   Added dendropy==4.6.4 from https://files.pythonhosted.org/packages/29/7a/0e09e052a746c9e97e45d6e0803e705e13426aa01a13ab845f6108ea4fd5/DendroPy-4.6.4.tar.gz to build tracker '/tmp/pip-build-tracker-sx_fx6be'
2024-05-22T13:10:40,682   Running setup.py (path:/tmp/pip-wheel-7ws1vj7u/dendropy_d3e4a47f989b4d1b9f5517738bd7afb0/setup.py) egg_info for package dendropy
2024-05-22T13:10:40,683   Created temporary directory: /tmp/pip-pip-egg-info-1n7lq9gh
2024-05-22T13:10:40,683   Preparing metadata (setup.py): started
2024-05-22T13:10:40,685   Running command python setup.py egg_info
2024-05-22T13:10:41,613   running egg_info
2024-05-22T13:10:41,617   creating /tmp/pip-pip-egg-info-1n7lq9gh/DendroPy.egg-info
2024-05-22T13:10:41,645   writing /tmp/pip-pip-egg-info-1n7lq9gh/DendroPy.egg-info/PKG-INFO
2024-05-22T13:10:41,649   writing dependency_links to /tmp/pip-pip-egg-info-1n7lq9gh/DendroPy.egg-info/dependency_links.txt
2024-05-22T13:10:41,650   writing entry points to /tmp/pip-pip-egg-info-1n7lq9gh/DendroPy.egg-info/entry_points.txt
2024-05-22T13:10:41,652   writing top-level names to /tmp/pip-pip-egg-info-1n7lq9gh/DendroPy.egg-info/top_level.txt
2024-05-22T13:10:41,654   writing manifest file '/tmp/pip-pip-egg-info-1n7lq9gh/DendroPy.egg-info/SOURCES.txt'
2024-05-22T13:10:41,765   reading manifest file '/tmp/pip-pip-egg-info-1n7lq9gh/DendroPy.egg-info/SOURCES.txt'
2024-05-22T13:10:41,766   reading manifest template 'MANIFEST.in'
2024-05-22T13:10:41,768   warning: no files found matching 'doc/Makefile'
2024-05-22T13:10:41,769   warning: no files found matching '*' under directory 'doc/source'
2024-05-22T13:10:41,963   warning: no previously-included files matching '.DS_Store' found anywhere in distribution
2024-05-22T13:10:41,966   warning: no previously-included files matching '*.pyc' found anywhere in distribution
2024-05-22T13:10:41,967   warning: no previously-included files matching '.gitignore' found anywhere in distribution
2024-05-22T13:10:41,969   warning: no previously-included files matching '.gitattributes' found anywhere in distribution
2024-05-22T13:10:41,971   warning: no previously-included files matching '.idea' found anywhere in distribution
2024-05-22T13:10:41,972   warning: no previously-included files matching '__pycache__' found anywhere in distribution
2024-05-22T13:10:41,973   adding license file 'LICENSE.rst'
2024-05-22T13:10:41,974   adding license file 'AUTHORS.rst'
2024-05-22T13:10:41,995   writing manifest file '/tmp/pip-pip-egg-info-1n7lq9gh/DendroPy.egg-info/SOURCES.txt'
2024-05-22T13:10:42,103   Preparing metadata (setup.py): finished with status 'done'
2024-05-22T13:10:42,107   Source in /tmp/pip-wheel-7ws1vj7u/dendropy_d3e4a47f989b4d1b9f5517738bd7afb0 has version 4.6.4, which satisfies requirement dendropy==4.6.4 from https://files.pythonhosted.org/packages/29/7a/0e09e052a746c9e97e45d6e0803e705e13426aa01a13ab845f6108ea4fd5/DendroPy-4.6.4.tar.gz
2024-05-22T13:10:42,108   Removed dendropy==4.6.4 from https://files.pythonhosted.org/packages/29/7a/0e09e052a746c9e97e45d6e0803e705e13426aa01a13ab845f6108ea4fd5/DendroPy-4.6.4.tar.gz from build tracker '/tmp/pip-build-tracker-sx_fx6be'
2024-05-22T13:10:42,112 Created temporary directory: /tmp/pip-unpack-1jgthglx
2024-05-22T13:10:42,114 Created temporary directory: /tmp/pip-unpack-x6is682j
2024-05-22T13:10:42,117 Building wheels for collected packages: dendropy
2024-05-22T13:10:42,121   Created temporary directory: /tmp/pip-wheel-f98jnwok
2024-05-22T13:10:42,122   Building wheel for dendropy (setup.py): started
2024-05-22T13:10:42,123   Destination directory: /tmp/pip-wheel-f98jnwok
2024-05-22T13:10:42,123   Running command python setup.py bdist_wheel
2024-05-22T13:10:42,999   running bdist_wheel
2024-05-22T13:10:43,131   running build
2024-05-22T13:10:43,132   running build_py
2024-05-22T13:10:43,159   creating build
2024-05-22T13:10:43,160   creating build/lib
2024-05-22T13:10:43,160   creating build/lib/dendropy
2024-05-22T13:10:43,162   copying src/dendropy/__main__.py -> build/lib/dendropy
2024-05-22T13:10:43,163   copying src/dendropy/__init__.py -> build/lib/dendropy
2024-05-22T13:10:43,166   creating build/lib/dendropy/simulate
2024-05-22T13:10:43,167   copying src/dendropy/simulate/treesim.py -> build/lib/dendropy/simulate
2024-05-22T13:10:43,169   copying src/dendropy/simulate/__init__.py -> build/lib/dendropy/simulate
2024-05-22T13:10:43,170   copying src/dendropy/simulate/popgensim.py -> build/lib/dendropy/simulate
2024-05-22T13:10:43,173   copying src/dendropy/simulate/charsim.py -> build/lib/dendropy/simulate
2024-05-22T13:10:43,175   creating build/lib/dendropy/application
2024-05-22T13:10:43,176   copying src/dendropy/application/sumtrees.py -> build/lib/dendropy/application
2024-05-22T13:10:43,181   copying src/dendropy/application/dendropy_format.py -> build/lib/dendropy/application
2024-05-22T13:10:43,183   copying src/dendropy/application/__init__.py -> build/lib/dendropy/application
2024-05-22T13:10:43,184   copying src/dendropy/application/sumlabels.py -> build/lib/dendropy/application
2024-05-22T13:10:43,187   creating build/lib/dendropy/datamodel
2024-05-22T13:10:43,188   copying src/dendropy/datamodel/charstatemodel.py -> build/lib/dendropy/datamodel
2024-05-22T13:10:43,192   copying src/dendropy/datamodel/taxonmodel.py -> build/lib/dendropy/datamodel
2024-05-22T13:10:43,196   copying src/dendropy/datamodel/__init__.py -> build/lib/dendropy/datamodel
2024-05-22T13:10:43,197   copying src/dendropy/datamodel/basemodel.py -> build/lib/dendropy/datamodel
2024-05-22T13:10:43,201   copying src/dendropy/datamodel/treecollectionmodel.py -> build/lib/dendropy/datamodel
2024-05-22T13:10:43,205   copying src/dendropy/datamodel/charmatrixmodel.py -> build/lib/dendropy/datamodel
2024-05-22T13:10:43,209   copying src/dendropy/datamodel/datasetmodel.py -> build/lib/dendropy/datamodel
2024-05-22T13:10:43,215   creating build/lib/dendropy/dataio
2024-05-22T13:10:43,216   copying src/dendropy/dataio/nexmlreader.py -> build/lib/dendropy/dataio
2024-05-22T13:10:43,219   copying src/dendropy/dataio/fastawriter.py -> build/lib/dendropy/dataio
2024-05-22T13:10:43,221   copying src/dendropy/dataio/multiphylipreader.py -> build/lib/dendropy/dataio
2024-05-22T13:10:43,223   copying src/dendropy/dataio/nexmlyielder.py -> build/lib/dendropy/dataio
2024-05-22T13:10:43,225   copying src/dendropy/dataio/newickyielder.py -> build/lib/dendropy/dataio
2024-05-22T13:10:43,226   copying src/dendropy/dataio/nexusyielder.py -> build/lib/dendropy/dataio
2024-05-22T13:10:43,228   copying src/dendropy/dataio/phylipwriter.py -> build/lib/dendropy/dataio
2024-05-22T13:10:43,230   copying src/dendropy/dataio/nexmlwriter.py -> build/lib/dendropy/dataio
2024-05-22T13:10:43,233   copying src/dendropy/dataio/newick.py -> build/lib/dendropy/dataio
2024-05-22T13:10:43,235   copying src/dendropy/dataio/phylipreader.py -> build/lib/dendropy/dataio
2024-05-22T13:10:43,237   copying src/dendropy/dataio/newickwriter.py -> build/lib/dendropy/dataio
2024-05-22T13:10:43,240   copying src/dendropy/dataio/nexuswriter.py -> build/lib/dendropy/dataio
2024-05-22T13:10:43,242   copying src/dendropy/dataio/__init__.py -> build/lib/dendropy/dataio
2024-05-22T13:10:43,244   copying src/dendropy/dataio/xmlprocessing.py -> build/lib/dendropy/dataio
2024-05-22T13:10:43,247   copying src/dendropy/dataio/ioservice.py -> build/lib/dendropy/dataio
2024-05-22T13:10:43,249   copying src/dendropy/dataio/fastareader.py -> build/lib/dendropy/dataio
2024-05-22T13:10:43,251   copying src/dendropy/dataio/newickreader.py -> build/lib/dendropy/dataio
2024-05-22T13:10:43,254   copying src/dendropy/dataio/tokenizer.py -> build/lib/dendropy/dataio
2024-05-22T13:10:43,256   copying src/dendropy/dataio/nexusreader.py -> build/lib/dendropy/dataio
2024-05-22T13:10:43,259   copying src/dendropy/dataio/nexusprocessing.py -> build/lib/dendropy/dataio
2024-05-22T13:10:43,262   creating build/lib/dendropy/model
2024-05-22T13:10:43,263   copying src/dendropy/model/discrete.py -> build/lib/dendropy/model
2024-05-22T13:10:43,266   copying src/dendropy/model/parsimony.py -> build/lib/dendropy/model
2024-05-22T13:10:43,268   copying src/dendropy/model/continuous.py -> build/lib/dendropy/model
2024-05-22T13:10:43,271   copying src/dendropy/model/birthdeath.py -> build/lib/dendropy/model
2024-05-22T13:10:43,274   copying src/dendropy/model/multispeciescoalescent.py -> build/lib/dendropy/model
2024-05-22T13:10:43,276   copying src/dendropy/model/reconcile.py -> build/lib/dendropy/model
2024-05-22T13:10:43,279   copying src/dendropy/model/protractedspeciation.py -> build/lib/dendropy/model
2024-05-22T13:10:43,282   copying src/dendropy/model/__init__.py -> build/lib/dendropy/model
2024-05-22T13:10:43,284   copying src/dendropy/model/coalescent.py -> build/lib/dendropy/model
2024-05-22T13:10:43,287   copying src/dendropy/model/treeshape.py -> build/lib/dendropy/model
2024-05-22T13:10:43,289   creating build/lib/dendropy/interop
2024-05-22T13:10:43,290   copying src/dendropy/interop/rstats.py -> build/lib/dendropy/interop
2024-05-22T13:10:43,293   copying src/dendropy/interop/paup.py -> build/lib/dendropy/interop
2024-05-22T13:10:43,295   copying src/dendropy/interop/seqgen.py -> build/lib/dendropy/interop
2024-05-22T13:10:43,298   copying src/dendropy/interop/ape.py -> build/lib/dendropy/interop
2024-05-22T13:10:43,300   copying src/dendropy/interop/genbank.py -> build/lib/dendropy/interop
2024-05-22T13:10:43,304   copying src/dendropy/interop/rspr.py -> build/lib/dendropy/interop
2024-05-22T13:10:43,306   copying src/dendropy/interop/entrez.py -> build/lib/dendropy/interop
2024-05-22T13:10:43,308   copying src/dendropy/interop/muscle.py -> build/lib/dendropy/interop
2024-05-22T13:10:43,310   copying src/dendropy/interop/itol.py -> build/lib/dendropy/interop
2024-05-22T13:10:43,312   copying src/dendropy/interop/__init__.py -> build/lib/dendropy/interop
2024-05-22T13:10:43,314   copying src/dendropy/interop/biopython.py -> build/lib/dendropy/interop
2024-05-22T13:10:43,316   copying src/dendropy/interop/raxml.py -> build/lib/dendropy/interop
2024-05-22T13:10:43,319   copying src/dendropy/interop/gbif.py -> build/lib/dendropy/interop
2024-05-22T13:10:43,321   copying src/dendropy/interop/ete.py -> build/lib/dendropy/interop
2024-05-22T13:10:43,324   creating build/lib/dendropy/utility
2024-05-22T13:10:43,325   copying src/dendropy/utility/textprocessing.py -> build/lib/dendropy/utility
2024-05-22T13:10:43,328   copying src/dendropy/utility/deprecate.py -> build/lib/dendropy/utility
2024-05-22T13:10:43,330   copying src/dendropy/utility/timeprocessing.py -> build/lib/dendropy/utility
2024-05-22T13:10:43,331   copying src/dendropy/utility/bibtex.py -> build/lib/dendropy/utility
2024-05-22T13:10:43,334   copying src/dendropy/utility/processio.py -> build/lib/dendropy/utility
2024-05-22T13:10:43,336   copying src/dendropy/utility/metavar.py -> build/lib/dendropy/utility
2024-05-22T13:10:43,337   copying src/dendropy/utility/filesys.py -> build/lib/dendropy/utility
2024-05-22T13:10:43,339   copying src/dendropy/utility/__init__.py -> build/lib/dendropy/utility
2024-05-22T13:10:43,341   copying src/dendropy/utility/urlio.py -> build/lib/dendropy/utility
2024-05-22T13:10:43,343   copying src/dendropy/utility/debug.py -> build/lib/dendropy/utility
2024-05-22T13:10:43,345   copying src/dendropy/utility/messaging.py -> build/lib/dendropy/utility
2024-05-22T13:10:43,347   copying src/dendropy/utility/constants.py -> build/lib/dendropy/utility
2024-05-22T13:10:43,349   copying src/dendropy/utility/container.py -> build/lib/dendropy/utility
2024-05-22T13:10:43,352   copying src/dendropy/utility/terminal.py -> build/lib/dendropy/utility
2024-05-22T13:10:43,353   copying src/dendropy/utility/vcsinfo.py -> build/lib/dendropy/utility
2024-05-22T13:10:43,355   copying src/dendropy/utility/bitprocessing.py -> build/lib/dendropy/utility
2024-05-22T13:10:43,357   copying src/dendropy/utility/cli.py -> build/lib/dendropy/utility
2024-05-22T13:10:43,359   copying src/dendropy/utility/error.py -> build/lib/dendropy/utility
2024-05-22T13:10:43,362   creating build/lib/dendropy/calculate
2024-05-22T13:10:43,363   copying src/dendropy/calculate/phylogeneticdistance.py -> build/lib/dendropy/calculate
2024-05-22T13:10:43,366   copying src/dendropy/calculate/statistics.py -> build/lib/dendropy/calculate
2024-05-22T13:10:43,368   copying src/dendropy/calculate/mathfn.py -> build/lib/dendropy/calculate
2024-05-22T13:10:43,370   copying src/dendropy/calculate/profiledistance.py -> build/lib/dendropy/calculate
2024-05-22T13:10:43,372   copying src/dendropy/calculate/probability.py -> build/lib/dendropy/calculate
2024-05-22T13:10:43,374   copying src/dendropy/calculate/__init__.py -> build/lib/dendropy/calculate
2024-05-22T13:10:43,376   copying src/dendropy/calculate/treescore.py -> build/lib/dendropy/calculate
2024-05-22T13:10:43,378   copying src/dendropy/calculate/treecompare.py -> build/lib/dendropy/calculate
2024-05-22T13:10:43,380   copying src/dendropy/calculate/treemeasure.py -> build/lib/dendropy/calculate
2024-05-22T13:10:43,383   copying src/dendropy/calculate/treesum.py -> build/lib/dendropy/calculate
2024-05-22T13:10:43,385   copying src/dendropy/calculate/combinatorics.py -> build/lib/dendropy/calculate
2024-05-22T13:10:43,387   copying src/dendropy/calculate/popgenstat.py -> build/lib/dendropy/calculate
2024-05-22T13:10:43,390   creating build/lib/dendropy/legacy
2024-05-22T13:10:43,391   copying src/dendropy/legacy/treesplit.py -> build/lib/dendropy/legacy
2024-05-22T13:10:43,393   copying src/dendropy/legacy/treesim.py -> build/lib/dendropy/legacy
2024-05-22T13:10:43,395   copying src/dendropy/legacy/continuous.py -> build/lib/dendropy/legacy
2024-05-22T13:10:43,397   copying src/dendropy/legacy/treemanip.py -> build/lib/dendropy/legacy
2024-05-22T13:10:43,399   copying src/dendropy/legacy/seqmodel.py -> build/lib/dendropy/legacy
2024-05-22T13:10:43,400   copying src/dendropy/legacy/reconcile.py -> build/lib/dendropy/legacy
2024-05-22T13:10:43,402   copying src/dendropy/legacy/__init__.py -> build/lib/dendropy/legacy
2024-05-22T13:10:43,404   copying src/dendropy/legacy/treecalc.py -> build/lib/dendropy/legacy
2024-05-22T13:10:43,406   copying src/dendropy/legacy/treesum.py -> build/lib/dendropy/legacy
2024-05-22T13:10:43,407   copying src/dendropy/legacy/coalescent.py -> build/lib/dendropy/legacy
2024-05-22T13:10:43,409   copying src/dendropy/legacy/popgensim.py -> build/lib/dendropy/legacy
2024-05-22T13:10:43,411   copying src/dendropy/legacy/seqsim.py -> build/lib/dendropy/legacy
2024-05-22T13:10:43,413   copying src/dendropy/legacy/ncbi.py -> build/lib/dendropy/legacy
2024-05-22T13:10:43,415   copying src/dendropy/legacy/popgenstat.py -> build/lib/dendropy/legacy
2024-05-22T13:10:43,418   creating build/lib/dendropy/mathlib
2024-05-22T13:10:43,419   copying src/dendropy/mathlib/statistics.py -> build/lib/dendropy/mathlib
2024-05-22T13:10:43,421   copying src/dendropy/mathlib/mathfn.py -> build/lib/dendropy/mathlib
2024-05-22T13:10:43,423   copying src/dendropy/mathlib/probability.py -> build/lib/dendropy/mathlib
2024-05-22T13:10:43,424   copying src/dendropy/mathlib/__init__.py -> build/lib/dendropy/mathlib
2024-05-22T13:10:43,426   creating build/lib/dendropy/datamodel/treemodel
2024-05-22T13:10:43,427   copying src/dendropy/datamodel/treemodel/_edge.py -> build/lib/dendropy/datamodel/treemodel
2024-05-22T13:10:43,430   copying src/dendropy/datamodel/treemodel/_bipartition.py -> build/lib/dendropy/datamodel/treemodel
2024-05-22T13:10:43,433   copying src/dendropy/datamodel/treemodel/_tree.py -> build/lib/dendropy/datamodel/treemodel
2024-05-22T13:10:43,439   copying src/dendropy/datamodel/treemodel/__init__.py -> build/lib/dendropy/datamodel/treemodel
2024-05-22T13:10:43,440   copying src/dendropy/datamodel/treemodel/_node.py -> build/lib/dendropy/datamodel/treemodel
2024-05-22T13:10:43,444   creating build/lib/dendropy/utility/libexec
2024-05-22T13:10:43,445   copying src/dendropy/utility/libexec/__init__.py -> build/lib/dendropy/utility/libexec
2024-05-22T13:10:43,447   running egg_info
2024-05-22T13:10:43,475   writing src/DendroPy.egg-info/PKG-INFO
2024-05-22T13:10:43,478   writing dependency_links to src/DendroPy.egg-info/dependency_links.txt
2024-05-22T13:10:43,480   writing entry points to src/DendroPy.egg-info/entry_points.txt
2024-05-22T13:10:43,481   writing top-level names to src/DendroPy.egg-info/top_level.txt
2024-05-22T13:10:43,532   reading manifest file 'src/DendroPy.egg-info/SOURCES.txt'
2024-05-22T13:10:43,548   reading manifest template 'MANIFEST.in'
2024-05-22T13:10:43,549   warning: no files found matching 'doc/Makefile'
2024-05-22T13:10:43,549   warning: no files found matching '*' under directory 'doc/source'
2024-05-22T13:10:43,721   warning: no previously-included files matching '.DS_Store' found anywhere in distribution
2024-05-22T13:10:43,725   warning: no previously-included files matching '*.pyc' found anywhere in distribution
2024-05-22T13:10:43,728   warning: no previously-included files matching '.gitignore' found anywhere in distribution
2024-05-22T13:10:43,731   warning: no previously-included files matching '.gitattributes' found anywhere in distribution
2024-05-22T13:10:43,733   warning: no previously-included files matching '.idea' found anywhere in distribution
2024-05-22T13:10:43,737   warning: no previously-included files matching '__pycache__' found anywhere in distribution
2024-05-22T13:10:43,737   adding license file 'LICENSE.rst'
2024-05-22T13:10:43,738   adding license file 'AUTHORS.rst'
2024-05-22T13:10:43,768   writing manifest file 'src/DendroPy.egg-info/SOURCES.txt'
2024-05-22T13:10:43,833   /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated.
2024-05-22T13:10:43,834   !!

2024-05-22T13:10:43,835           ********************************************************************************
2024-05-22T13:10:43,835           Please avoid running ``setup.py`` directly.
2024-05-22T13:10:43,836           Instead, use pypa/build, pypa/installer or other
2024-05-22T13:10:43,836           standards-based tools.

2024-05-22T13:10:43,837           See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details.
2024-05-22T13:10:43,838           ********************************************************************************

2024-05-22T13:10:43,839   !!
2024-05-22T13:10:43,840     self.initialize_options()
2024-05-22T13:10:43,859   installing to build/bdist.linux-armv7l/wheel
2024-05-22T13:10:43,860   running install
2024-05-22T13:10:43,884   running install_lib
2024-05-22T13:10:43,910   creating build/bdist.linux-armv7l
2024-05-22T13:10:43,911   creating build/bdist.linux-armv7l/wheel
2024-05-22T13:10:43,912   creating build/bdist.linux-armv7l/wheel/dendropy
2024-05-22T13:10:43,913   copying build/lib/dendropy/__main__.py -> build/bdist.linux-armv7l/wheel/dendropy
2024-05-22T13:10:43,915   creating build/bdist.linux-armv7l/wheel/dendropy/simulate
2024-05-22T13:10:43,916   copying build/lib/dendropy/simulate/treesim.py -> build/bdist.linux-armv7l/wheel/dendropy/simulate
2024-05-22T13:10:43,918   copying build/lib/dendropy/simulate/__init__.py -> build/bdist.linux-armv7l/wheel/dendropy/simulate
2024-05-22T13:10:43,920   copying build/lib/dendropy/simulate/popgensim.py -> build/bdist.linux-armv7l/wheel/dendropy/simulate
2024-05-22T13:10:43,922   copying build/lib/dendropy/simulate/charsim.py -> build/bdist.linux-armv7l/wheel/dendropy/simulate
2024-05-22T13:10:43,925   creating build/bdist.linux-armv7l/wheel/dendropy/application
2024-05-22T13:10:43,926   copying build/lib/dendropy/application/sumtrees.py -> build/bdist.linux-armv7l/wheel/dendropy/application
2024-05-22T13:10:43,930   copying build/lib/dendropy/application/dendropy_format.py -> build/bdist.linux-armv7l/wheel/dendropy/application
2024-05-22T13:10:43,932   copying build/lib/dendropy/application/__init__.py -> build/bdist.linux-armv7l/wheel/dendropy/application
2024-05-22T13:10:43,933   copying build/lib/dendropy/application/sumlabels.py -> build/bdist.linux-armv7l/wheel/dendropy/application
2024-05-22T13:10:43,936   creating build/bdist.linux-armv7l/wheel/dendropy/datamodel
2024-05-22T13:10:43,936   copying build/lib/dendropy/datamodel/charstatemodel.py -> build/bdist.linux-armv7l/wheel/dendropy/datamodel
2024-05-22T13:10:43,940   creating build/bdist.linux-armv7l/wheel/dendropy/datamodel/treemodel
2024-05-22T13:10:43,941   copying build/lib/dendropy/datamodel/treemodel/_edge.py -> build/bdist.linux-armv7l/wheel/dendropy/datamodel/treemodel
2024-05-22T13:10:43,943   copying build/lib/dendropy/datamodel/treemodel/_bipartition.py -> build/bdist.linux-armv7l/wheel/dendropy/datamodel/treemodel
2024-05-22T13:10:43,946   copying build/lib/dendropy/datamodel/treemodel/_tree.py -> build/bdist.linux-armv7l/wheel/dendropy/datamodel/treemodel
2024-05-22T13:10:43,951   copying build/lib/dendropy/datamodel/treemodel/__init__.py -> build/bdist.linux-armv7l/wheel/dendropy/datamodel/treemodel
2024-05-22T13:10:43,953   copying build/lib/dendropy/datamodel/treemodel/_node.py -> build/bdist.linux-armv7l/wheel/dendropy/datamodel/treemodel
2024-05-22T13:10:43,957   copying build/lib/dendropy/datamodel/taxonmodel.py -> build/bdist.linux-armv7l/wheel/dendropy/datamodel
2024-05-22T13:10:43,961   copying build/lib/dendropy/datamodel/__init__.py -> build/bdist.linux-armv7l/wheel/dendropy/datamodel
2024-05-22T13:10:43,962   copying build/lib/dendropy/datamodel/basemodel.py -> build/bdist.linux-armv7l/wheel/dendropy/datamodel
2024-05-22T13:10:43,966   copying build/lib/dendropy/datamodel/treecollectionmodel.py -> build/bdist.linux-armv7l/wheel/dendropy/datamodel
2024-05-22T13:10:43,971   copying build/lib/dendropy/datamodel/charmatrixmodel.py -> build/bdist.linux-armv7l/wheel/dendropy/datamodel
2024-05-22T13:10:43,975   copying build/lib/dendropy/datamodel/datasetmodel.py -> build/bdist.linux-armv7l/wheel/dendropy/datamodel
2024-05-22T13:10:43,978   creating build/bdist.linux-armv7l/wheel/dendropy/dataio
2024-05-22T13:10:43,979   copying build/lib/dendropy/dataio/nexmlreader.py -> build/bdist.linux-armv7l/wheel/dendropy/dataio
2024-05-22T13:10:43,982   copying build/lib/dendropy/dataio/fastawriter.py -> build/bdist.linux-armv7l/wheel/dendropy/dataio
2024-05-22T13:10:43,984   copying build/lib/dendropy/dataio/multiphylipreader.py -> build/bdist.linux-armv7l/wheel/dendropy/dataio
2024-05-22T13:10:43,986   copying build/lib/dendropy/dataio/nexmlyielder.py -> build/bdist.linux-armv7l/wheel/dendropy/dataio
2024-05-22T13:10:43,988   copying build/lib/dendropy/dataio/newickyielder.py -> build/bdist.linux-armv7l/wheel/dendropy/dataio
2024-05-22T13:10:43,990   copying build/lib/dendropy/dataio/nexusyielder.py -> build/bdist.linux-armv7l/wheel/dendropy/dataio
2024-05-22T13:10:43,992   copying build/lib/dendropy/dataio/phylipwriter.py -> build/bdist.linux-armv7l/wheel/dendropy/dataio
2024-05-22T13:10:43,994   copying build/lib/dendropy/dataio/nexmlwriter.py -> build/bdist.linux-armv7l/wheel/dendropy/dataio
2024-05-22T13:10:43,997   copying build/lib/dendropy/dataio/newick.py -> build/bdist.linux-armv7l/wheel/dendropy/dataio
2024-05-22T13:10:43,999   copying build/lib/dendropy/dataio/phylipreader.py -> build/bdist.linux-armv7l/wheel/dendropy/dataio
2024-05-22T13:10:44,001   copying build/lib/dendropy/dataio/newickwriter.py -> build/bdist.linux-armv7l/wheel/dendropy/dataio
2024-05-22T13:10:44,004   copying build/lib/dendropy/dataio/nexuswriter.py -> build/bdist.linux-armv7l/wheel/dendropy/dataio
2024-05-22T13:10:44,006   copying build/lib/dendropy/dataio/__init__.py -> build/bdist.linux-armv7l/wheel/dendropy/dataio
2024-05-22T13:10:44,008   copying build/lib/dendropy/dataio/xmlprocessing.py -> build/bdist.linux-armv7l/wheel/dendropy/dataio
2024-05-22T13:10:44,011   copying build/lib/dendropy/dataio/ioservice.py -> build/bdist.linux-armv7l/wheel/dendropy/dataio
2024-05-22T13:10:44,013   copying build/lib/dendropy/dataio/fastareader.py -> build/bdist.linux-armv7l/wheel/dendropy/dataio
2024-05-22T13:10:44,015   copying build/lib/dendropy/dataio/newickreader.py -> build/bdist.linux-armv7l/wheel/dendropy/dataio
2024-05-22T13:10:44,018   copying build/lib/dendropy/dataio/tokenizer.py -> build/bdist.linux-armv7l/wheel/dendropy/dataio
2024-05-22T13:10:44,021   copying build/lib/dendropy/dataio/nexusreader.py -> build/bdist.linux-armv7l/wheel/dendropy/dataio
2024-05-22T13:10:44,025   copying build/lib/dendropy/dataio/nexusprocessing.py -> build/bdist.linux-armv7l/wheel/dendropy/dataio
2024-05-22T13:10:44,027   creating build/bdist.linux-armv7l/wheel/dendropy/model
2024-05-22T13:10:44,028   copying build/lib/dendropy/model/discrete.py -> build/bdist.linux-armv7l/wheel/dendropy/model
2024-05-22T13:10:44,031   copying build/lib/dendropy/model/parsimony.py -> build/bdist.linux-armv7l/wheel/dendropy/model
2024-05-22T13:10:44,033   copying build/lib/dendropy/model/continuous.py -> build/bdist.linux-armv7l/wheel/dendropy/model
2024-05-22T13:10:44,036   copying build/lib/dendropy/model/birthdeath.py -> build/bdist.linux-armv7l/wheel/dendropy/model
2024-05-22T13:10:44,040   copying build/lib/dendropy/model/multispeciescoalescent.py -> build/bdist.linux-armv7l/wheel/dendropy/model
2024-05-22T13:10:44,043   copying build/lib/dendropy/model/reconcile.py -> build/bdist.linux-armv7l/wheel/dendropy/model
2024-05-22T13:10:44,045   copying build/lib/dendropy/model/protractedspeciation.py -> build/bdist.linux-armv7l/wheel/dendropy/model
2024-05-22T13:10:44,049   copying build/lib/dendropy/model/__init__.py -> build/bdist.linux-armv7l/wheel/dendropy/model
2024-05-22T13:10:44,050   copying build/lib/dendropy/model/coalescent.py -> build/bdist.linux-armv7l/wheel/dendropy/model
2024-05-22T13:10:44,053   copying build/lib/dendropy/model/treeshape.py -> build/bdist.linux-armv7l/wheel/dendropy/model
2024-05-22T13:10:44,055   copying build/lib/dendropy/__init__.py -> build/bdist.linux-armv7l/wheel/dendropy
2024-05-22T13:10:44,058   creating build/bdist.linux-armv7l/wheel/dendropy/interop
2024-05-22T13:10:44,059   copying build/lib/dendropy/interop/rstats.py -> build/bdist.linux-armv7l/wheel/dendropy/interop
2024-05-22T13:10:44,061   copying build/lib/dendropy/interop/paup.py -> build/bdist.linux-armv7l/wheel/dendropy/interop
2024-05-22T13:10:44,064   copying build/lib/dendropy/interop/seqgen.py -> build/bdist.linux-armv7l/wheel/dendropy/interop
2024-05-22T13:10:44,067   copying build/lib/dendropy/interop/ape.py -> build/bdist.linux-armv7l/wheel/dendropy/interop
2024-05-22T13:10:44,069   copying build/lib/dendropy/interop/genbank.py -> build/bdist.linux-armv7l/wheel/dendropy/interop
2024-05-22T13:10:44,072   copying build/lib/dendropy/interop/rspr.py -> build/bdist.linux-armv7l/wheel/dendropy/interop
2024-05-22T13:10:44,074   copying build/lib/dendropy/interop/entrez.py -> build/bdist.linux-armv7l/wheel/dendropy/interop
2024-05-22T13:10:44,076   copying build/lib/dendropy/interop/muscle.py -> build/bdist.linux-armv7l/wheel/dendropy/interop
2024-05-22T13:10:44,078   copying build/lib/dendropy/interop/itol.py -> build/bdist.linux-armv7l/wheel/dendropy/interop
2024-05-22T13:10:44,081   copying build/lib/dendropy/interop/__init__.py -> build/bdist.linux-armv7l/wheel/dendropy/interop
2024-05-22T13:10:44,083   copying build/lib/dendropy/interop/biopython.py -> build/bdist.linux-armv7l/wheel/dendropy/interop
2024-05-22T13:10:44,085   copying build/lib/dendropy/interop/raxml.py -> build/bdist.linux-armv7l/wheel/dendropy/interop
2024-05-22T13:10:44,087   copying build/lib/dendropy/interop/gbif.py -> build/bdist.linux-armv7l/wheel/dendropy/interop
2024-05-22T13:10:44,090   copying build/lib/dendropy/interop/ete.py -> build/bdist.linux-armv7l/wheel/dendropy/interop
2024-05-22T13:10:44,092   creating build/bdist.linux-armv7l/wheel/dendropy/utility
2024-05-22T13:10:44,093   copying build/lib/dendropy/utility/textprocessing.py -> build/bdist.linux-armv7l/wheel/dendropy/utility
2024-05-22T13:10:44,096   copying build/lib/dendropy/utility/deprecate.py -> build/bdist.linux-armv7l/wheel/dendropy/utility
2024-05-22T13:10:44,098   copying build/lib/dendropy/utility/timeprocessing.py -> build/bdist.linux-armv7l/wheel/dendropy/utility
2024-05-22T13:10:44,099   copying build/lib/dendropy/utility/bibtex.py -> build/bdist.linux-armv7l/wheel/dendropy/utility
2024-05-22T13:10:44,102   copying build/lib/dendropy/utility/processio.py -> build/bdist.linux-armv7l/wheel/dendropy/utility
2024-05-22T13:10:44,104   creating build/bdist.linux-armv7l/wheel/dendropy/utility/libexec
2024-05-22T13:10:44,105   copying build/lib/dendropy/utility/libexec/__init__.py -> build/bdist.linux-armv7l/wheel/dendropy/utility/libexec
2024-05-22T13:10:44,107   copying build/lib/dendropy/utility/metavar.py -> build/bdist.linux-armv7l/wheel/dendropy/utility
2024-05-22T13:10:44,108   copying build/lib/dendropy/utility/filesys.py -> build/bdist.linux-armv7l/wheel/dendropy/utility
2024-05-22T13:10:44,111   copying build/lib/dendropy/utility/__init__.py -> build/bdist.linux-armv7l/wheel/dendropy/utility
2024-05-22T13:10:44,112   copying build/lib/dendropy/utility/urlio.py -> build/bdist.linux-armv7l/wheel/dendropy/utility
2024-05-22T13:10:44,114   copying build/lib/dendropy/utility/debug.py -> build/bdist.linux-armv7l/wheel/dendropy/utility
2024-05-22T13:10:44,116   copying build/lib/dendropy/utility/messaging.py -> build/bdist.linux-armv7l/wheel/dendropy/utility
2024-05-22T13:10:44,118   copying build/lib/dendropy/utility/constants.py -> build/bdist.linux-armv7l/wheel/dendropy/utility
2024-05-22T13:10:44,120   copying build/lib/dendropy/utility/container.py -> build/bdist.linux-armv7l/wheel/dendropy/utility
2024-05-22T13:10:44,123   copying build/lib/dendropy/utility/terminal.py -> build/bdist.linux-armv7l/wheel/dendropy/utility
2024-05-22T13:10:44,125   copying build/lib/dendropy/utility/vcsinfo.py -> build/bdist.linux-armv7l/wheel/dendropy/utility
2024-05-22T13:10:44,127   copying build/lib/dendropy/utility/bitprocessing.py -> build/bdist.linux-armv7l/wheel/dendropy/utility
2024-05-22T13:10:44,129   copying build/lib/dendropy/utility/cli.py -> build/bdist.linux-armv7l/wheel/dendropy/utility
2024-05-22T13:10:44,131   copying build/lib/dendropy/utility/error.py -> build/bdist.linux-armv7l/wheel/dendropy/utility
2024-05-22T13:10:44,134   creating build/bdist.linux-armv7l/wheel/dendropy/calculate
2024-05-22T13:10:44,135   copying build/lib/dendropy/calculate/phylogeneticdistance.py -> build/bdist.linux-armv7l/wheel/dendropy/calculate
2024-05-22T13:10:44,138   copying build/lib/dendropy/calculate/statistics.py -> build/bdist.linux-armv7l/wheel/dendropy/calculate
2024-05-22T13:10:44,140   copying build/lib/dendropy/calculate/mathfn.py -> build/bdist.linux-armv7l/wheel/dendropy/calculate
2024-05-22T13:10:44,142   copying build/lib/dendropy/calculate/profiledistance.py -> build/bdist.linux-armv7l/wheel/dendropy/calculate
2024-05-22T13:10:44,145   copying build/lib/dendropy/calculate/probability.py -> build/bdist.linux-armv7l/wheel/dendropy/calculate
2024-05-22T13:10:44,147   copying build/lib/dendropy/calculate/__init__.py -> build/bdist.linux-armv7l/wheel/dendropy/calculate
2024-05-22T13:10:44,149   copying build/lib/dendropy/calculate/treescore.py -> build/bdist.linux-armv7l/wheel/dendropy/calculate
2024-05-22T13:10:44,150   copying build/lib/dendropy/calculate/treecompare.py -> build/bdist.linux-armv7l/wheel/dendropy/calculate
2024-05-22T13:10:44,153   copying build/lib/dendropy/calculate/treemeasure.py -> build/bdist.linux-armv7l/wheel/dendropy/calculate
2024-05-22T13:10:44,156   copying build/lib/dendropy/calculate/treesum.py -> build/bdist.linux-armv7l/wheel/dendropy/calculate
2024-05-22T13:10:44,158   copying build/lib/dendropy/calculate/combinatorics.py -> build/bdist.linux-armv7l/wheel/dendropy/calculate
2024-05-22T13:10:44,160   copying build/lib/dendropy/calculate/popgenstat.py -> build/bdist.linux-armv7l/wheel/dendropy/calculate
2024-05-22T13:10:44,164   creating build/bdist.linux-armv7l/wheel/dendropy/legacy
2024-05-22T13:10:44,165   copying build/lib/dendropy/legacy/treesplit.py -> build/bdist.linux-armv7l/wheel/dendropy/legacy
2024-05-22T13:10:44,167   copying build/lib/dendropy/legacy/treesim.py -> build/bdist.linux-armv7l/wheel/dendropy/legacy
2024-05-22T13:10:44,169   copying build/lib/dendropy/legacy/continuous.py -> build/bdist.linux-armv7l/wheel/dendropy/legacy
2024-05-22T13:10:44,171   copying build/lib/dendropy/legacy/treemanip.py -> build/bdist.linux-armv7l/wheel/dendropy/legacy
2024-05-22T13:10:44,173   copying build/lib/dendropy/legacy/seqmodel.py -> build/bdist.linux-armv7l/wheel/dendropy/legacy
2024-05-22T13:10:44,174   copying build/lib/dendropy/legacy/reconcile.py -> build/bdist.linux-armv7l/wheel/dendropy/legacy
2024-05-22T13:10:44,176   copying build/lib/dendropy/legacy/__init__.py -> build/bdist.linux-armv7l/wheel/dendropy/legacy
2024-05-22T13:10:44,178   copying build/lib/dendropy/legacy/treecalc.py -> build/bdist.linux-armv7l/wheel/dendropy/legacy
2024-05-22T13:10:44,180   copying build/lib/dendropy/legacy/treesum.py -> build/bdist.linux-armv7l/wheel/dendropy/legacy
2024-05-22T13:10:44,182   copying build/lib/dendropy/legacy/coalescent.py -> build/bdist.linux-armv7l/wheel/dendropy/legacy
2024-05-22T13:10:44,183   copying build/lib/dendropy/legacy/popgensim.py -> build/bdist.linux-armv7l/wheel/dendropy/legacy
2024-05-22T13:10:44,185   copying build/lib/dendropy/legacy/seqsim.py -> build/bdist.linux-armv7l/wheel/dendropy/legacy
2024-05-22T13:10:44,187   copying build/lib/dendropy/legacy/ncbi.py -> build/bdist.linux-armv7l/wheel/dendropy/legacy
2024-05-22T13:10:44,190   copying build/lib/dendropy/legacy/popgenstat.py -> build/bdist.linux-armv7l/wheel/dendropy/legacy
2024-05-22T13:10:44,192   creating build/bdist.linux-armv7l/wheel/dendropy/mathlib
2024-05-22T13:10:44,193   copying build/lib/dendropy/mathlib/statistics.py -> build/bdist.linux-armv7l/wheel/dendropy/mathlib
2024-05-22T13:10:44,195   copying build/lib/dendropy/mathlib/mathfn.py -> build/bdist.linux-armv7l/wheel/dendropy/mathlib
2024-05-22T13:10:44,197   copying build/lib/dendropy/mathlib/probability.py -> build/bdist.linux-armv7l/wheel/dendropy/mathlib
2024-05-22T13:10:44,198   copying build/lib/dendropy/mathlib/__init__.py -> build/bdist.linux-armv7l/wheel/dendropy/mathlib
2024-05-22T13:10:44,200   running install_egg_info
2024-05-22T13:10:44,233   Copying src/DendroPy.egg-info to build/bdist.linux-armv7l/wheel/DendroPy-4.6.4-py3.11.egg-info
2024-05-22T13:10:44,244   running install_scripts
2024-05-22T13:10:44,259   creating build/bdist.linux-armv7l/wheel/DendroPy-4.6.4.dist-info/WHEEL
2024-05-22T13:10:44,262   creating '/tmp/pip-wheel-f98jnwok/DendroPy-4.6.4-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2024-05-22T13:10:44,265   adding 'dendropy/__init__.py'
2024-05-22T13:10:44,267   adding 'dendropy/__main__.py'
2024-05-22T13:10:44,268   adding 'dendropy/application/__init__.py'
2024-05-22T13:10:44,270   adding 'dendropy/application/dendropy_format.py'
2024-05-22T13:10:44,272   adding 'dendropy/application/sumlabels.py'
2024-05-22T13:10:44,283   adding 'dendropy/application/sumtrees.py'
2024-05-22T13:10:44,285   adding 'dendropy/calculate/__init__.py'
2024-05-22T13:10:44,287   adding 'dendropy/calculate/combinatorics.py'
2024-05-22T13:10:44,288   adding 'dendropy/calculate/mathfn.py'
2024-05-22T13:10:44,294   adding 'dendropy/calculate/phylogeneticdistance.py'
2024-05-22T13:10:44,297   adding 'dendropy/calculate/popgenstat.py'
2024-05-22T13:10:44,299   adding 'dendropy/calculate/probability.py'
2024-05-22T13:10:44,301   adding 'dendropy/calculate/profiledistance.py'
2024-05-22T13:10:44,303   adding 'dendropy/calculate/statistics.py'
2024-05-22T13:10:44,307   adding 'dendropy/calculate/treecompare.py'
2024-05-22T13:10:44,309   adding 'dendropy/calculate/treemeasure.py'
2024-05-22T13:10:44,310   adding 'dendropy/calculate/treescore.py'
2024-05-22T13:10:44,313   adding 'dendropy/calculate/treesum.py'
2024-05-22T13:10:44,315   adding 'dendropy/dataio/__init__.py'
2024-05-22T13:10:44,316   adding 'dendropy/dataio/fastareader.py'
2024-05-22T13:10:44,317   adding 'dendropy/dataio/fastawriter.py'
2024-05-22T13:10:44,320   adding 'dendropy/dataio/ioservice.py'
2024-05-22T13:10:44,321   adding 'dendropy/dataio/multiphylipreader.py'
2024-05-22T13:10:44,322   adding 'dendropy/dataio/newick.py'
2024-05-22T13:10:44,326   adding 'dendropy/dataio/newickreader.py'
2024-05-22T13:10:44,328   adding 'dendropy/dataio/newickwriter.py'
2024-05-22T13:10:44,330   adding 'dendropy/dataio/newickyielder.py'
2024-05-22T13:10:44,334   adding 'dendropy/dataio/nexmlreader.py'
2024-05-22T13:10:44,337   adding 'dendropy/dataio/nexmlwriter.py'
2024-05-22T13:10:44,339   adding 'dendropy/dataio/nexmlyielder.py'
2024-05-22T13:10:44,341   adding 'dendropy/dataio/nexusprocessing.py'
2024-05-22T13:10:44,348   adding 'dendropy/dataio/nexusreader.py'
2024-05-22T13:10:44,351   adding 'dendropy/dataio/nexuswriter.py'
2024-05-22T13:10:44,353   adding 'dendropy/dataio/nexusyielder.py'
2024-05-22T13:10:44,355   adding 'dendropy/dataio/phylipreader.py'
2024-05-22T13:10:44,357   adding 'dendropy/dataio/phylipwriter.py'
2024-05-22T13:10:44,359   adding 'dendropy/dataio/tokenizer.py'
2024-05-22T13:10:44,360   adding 'dendropy/dataio/xmlprocessing.py'
2024-05-22T13:10:44,362   adding 'dendropy/datamodel/__init__.py'
2024-05-22T13:10:44,367   adding 'dendropy/datamodel/basemodel.py'
2024-05-22T13:10:44,377   adding 'dendropy/datamodel/charmatrixmodel.py'
2024-05-22T13:10:44,382   adding 'dendropy/datamodel/charstatemodel.py'
2024-05-22T13:10:44,385   adding 'dendropy/datamodel/datasetmodel.py'
2024-05-22T13:10:44,394   adding 'dendropy/datamodel/taxonmodel.py'
2024-05-22T13:10:44,407   adding 'dendropy/datamodel/treecollectionmodel.py'
2024-05-22T13:10:44,410   adding 'dendropy/datamodel/treemodel/__init__.py'
2024-05-22T13:10:44,413   adding 'dendropy/datamodel/treemodel/_bipartition.py'
2024-05-22T13:10:44,414   adding 'dendropy/datamodel/treemodel/_edge.py'
2024-05-22T13:10:44,421   adding 'dendropy/datamodel/treemodel/_node.py'
2024-05-22T13:10:44,443   adding 'dendropy/datamodel/treemodel/_tree.py'
2024-05-22T13:10:44,447   adding 'dendropy/interop/__init__.py'
2024-05-22T13:10:44,450   adding 'dendropy/interop/ape.py'
2024-05-22T13:10:44,451   adding 'dendropy/interop/biopython.py'
2024-05-22T13:10:44,453   adding 'dendropy/interop/entrez.py'
2024-05-22T13:10:44,455   adding 'dendropy/interop/ete.py'
2024-05-22T13:10:44,457   adding 'dendropy/interop/gbif.py'
2024-05-22T13:10:44,462   adding 'dendropy/interop/genbank.py'
2024-05-22T13:10:44,465   adding 'dendropy/interop/itol.py'
2024-05-22T13:10:44,467   adding 'dendropy/interop/muscle.py'
2024-05-22T13:10:44,473   adding 'dendropy/interop/paup.py'
2024-05-22T13:10:44,479   adding 'dendropy/interop/raxml.py'
2024-05-22T13:10:44,481   adding 'dendropy/interop/rspr.py'
2024-05-22T13:10:44,483   adding 'dendropy/interop/rstats.py'
2024-05-22T13:10:44,486   adding 'dendropy/interop/seqgen.py'
2024-05-22T13:10:44,488   adding 'dendropy/legacy/__init__.py'
2024-05-22T13:10:44,490   adding 'dendropy/legacy/coalescent.py'
2024-05-22T13:10:44,491   adding 'dendropy/legacy/continuous.py'
2024-05-22T13:10:44,494   adding 'dendropy/legacy/ncbi.py'
2024-05-22T13:10:44,496   adding 'dendropy/legacy/popgensim.py'
2024-05-22T13:10:44,497   adding 'dendropy/legacy/popgenstat.py'
2024-05-22T13:10:44,499   adding 'dendropy/legacy/reconcile.py'
2024-05-22T13:10:44,500   adding 'dendropy/legacy/seqmodel.py'
2024-05-22T13:10:44,502   adding 'dendropy/legacy/seqsim.py'
2024-05-22T13:10:44,504   adding 'dendropy/legacy/treecalc.py'
2024-05-22T13:10:44,506   adding 'dendropy/legacy/treemanip.py'
2024-05-22T13:10:44,508   adding 'dendropy/legacy/treesim.py'
2024-05-22T13:10:44,510   adding 'dendropy/legacy/treesplit.py'
2024-05-22T13:10:44,512   adding 'dendropy/legacy/treesum.py'
2024-05-22T13:10:44,514   adding 'dendropy/mathlib/__init__.py'
2024-05-22T13:10:44,515   adding 'dendropy/mathlib/mathfn.py'
2024-05-22T13:10:44,517   adding 'dendropy/mathlib/probability.py'
2024-05-22T13:10:44,518   adding 'dendropy/mathlib/statistics.py'
2024-05-22T13:10:44,520   adding 'dendropy/model/__init__.py'
2024-05-22T13:10:44,531   adding 'dendropy/model/birthdeath.py'
2024-05-22T13:10:44,536   adding 'dendropy/model/coalescent.py'
2024-05-22T13:10:44,539   adding 'dendropy/model/continuous.py'
2024-05-22T13:10:44,542   adding 'dendropy/model/discrete.py'
2024-05-22T13:10:44,544   adding 'dendropy/model/multispeciescoalescent.py'
2024-05-22T13:10:44,546   adding 'dendropy/model/parsimony.py'
2024-05-22T13:10:44,551   adding 'dendropy/model/protractedspeciation.py'
2024-05-22T13:10:44,555   adding 'dendropy/model/reconcile.py'
2024-05-22T13:10:44,557   adding 'dendropy/model/treeshape.py'
2024-05-22T13:10:44,559   adding 'dendropy/simulate/__init__.py'
2024-05-22T13:10:44,560   adding 'dendropy/simulate/charsim.py'
2024-05-22T13:10:44,562   adding 'dendropy/simulate/popgensim.py'
2024-05-22T13:10:44,563   adding 'dendropy/simulate/treesim.py'
2024-05-22T13:10:44,565   adding 'dendropy/utility/__init__.py'
2024-05-22T13:10:44,567   adding 'dendropy/utility/bibtex.py'
2024-05-22T13:10:44,568   adding 'dendropy/utility/bitprocessing.py'
2024-05-22T13:10:44,570   adding 'dendropy/utility/cli.py'
2024-05-22T13:10:44,571   adding 'dendropy/utility/constants.py'
2024-05-22T13:10:44,576   adding 'dendropy/utility/container.py'
2024-05-22T13:10:44,577   adding 'dendropy/utility/debug.py'
2024-05-22T13:10:44,579   adding 'dendropy/utility/deprecate.py'
2024-05-22T13:10:44,580   adding 'dendropy/utility/error.py'
2024-05-22T13:10:44,582   adding 'dendropy/utility/filesys.py'
2024-05-22T13:10:44,584   adding 'dendropy/utility/messaging.py'
2024-05-22T13:10:44,585   adding 'dendropy/utility/metavar.py'
2024-05-22T13:10:44,587   adding 'dendropy/utility/processio.py'
2024-05-22T13:10:44,588   adding 'dendropy/utility/terminal.py'
2024-05-22T13:10:44,590   adding 'dendropy/utility/textprocessing.py'
2024-05-22T13:10:44,591   adding 'dendropy/utility/timeprocessing.py'
2024-05-22T13:10:44,593   adding 'dendropy/utility/urlio.py'
2024-05-22T13:10:44,595   adding 'dendropy/utility/vcsinfo.py'
2024-05-22T13:10:44,596   adding 'dendropy/utility/libexec/__init__.py'
2024-05-22T13:10:44,598   adding 'DendroPy-4.6.4.dist-info/AUTHORS.rst'
2024-05-22T13:10:44,599   adding 'DendroPy-4.6.4.dist-info/LICENSE.rst'
2024-05-22T13:10:44,600   adding 'DendroPy-4.6.4.dist-info/METADATA'
2024-05-22T13:10:44,601   adding 'DendroPy-4.6.4.dist-info/WHEEL'
2024-05-22T13:10:44,602   adding 'DendroPy-4.6.4.dist-info/entry_points.txt'
2024-05-22T13:10:44,603   adding 'DendroPy-4.6.4.dist-info/top_level.txt'
2024-05-22T13:10:44,605   adding 'DendroPy-4.6.4.dist-info/RECORD'
2024-05-22T13:10:44,614   removing build/bdist.linux-armv7l/wheel
2024-05-22T13:10:44,754   Building wheel for dendropy (setup.py): finished with status 'done'
2024-05-22T13:10:44,761   Created wheel for dendropy: filename=DendroPy-4.6.4-py3-none-any.whl size=459443 sha256=f400bcc098632c539bc34d194679fbd3c544fcd4ac1410b8fbfab1e17ffb6a84
2024-05-22T13:10:44,762   Stored in directory: /tmp/pip-ephem-wheel-cache-6j4_3kjd/wheels/f1/11/b3/db7ae5268448cbb2fb702a8660bbb8598c9bee396a7767e6dd
2024-05-22T13:10:44,777 Successfully built dendropy
2024-05-22T13:10:44,792 Removed build tracker: '/tmp/pip-build-tracker-sx_fx6be'