2024-05-22T14:04:28,541 Created temporary directory: /tmp/pip-build-tracker-4hll5545 2024-05-22T14:04:28,542 Initialized build tracking at /tmp/pip-build-tracker-4hll5545 2024-05-22T14:04:28,543 Created build tracker: /tmp/pip-build-tracker-4hll5545 2024-05-22T14:04:28,543 Entered build tracker: /tmp/pip-build-tracker-4hll5545 2024-05-22T14:04:28,544 Created temporary directory: /tmp/pip-wheel-ugpai05c 2024-05-22T14:04:28,547 Created temporary directory: /tmp/pip-ephem-wheel-cache-sgoexw9t 2024-05-22T14:04:28,572 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2024-05-22T14:04:28,575 2 location(s) to search for versions of dendropy: 2024-05-22T14:04:28,575 * https://pypi.org/simple/dendropy/ 2024-05-22T14:04:28,575 * https://www.piwheels.org/simple/dendropy/ 2024-05-22T14:04:28,576 Fetching project page and analyzing links: https://pypi.org/simple/dendropy/ 2024-05-22T14:04:28,577 Getting page https://pypi.org/simple/dendropy/ 2024-05-22T14:04:28,578 Found index url https://pypi.org/simple/ 2024-05-22T14:04:28,720 Fetched page https://pypi.org/simple/dendropy/ as application/vnd.pypi.simple.v1+json 2024-05-22T14:04:28,726 Found link https://files.pythonhosted.org/packages/03/48/8379b3e170d60052da7ccf3387549af17d46808a39062fbb234df3038fa0/DendroPy-3.7.0.tar.gz (from https://pypi.org/simple/dendropy/), version: 3.7.0 2024-05-22T14:04:28,727 Found link https://files.pythonhosted.org/packages/17/0a/914df0e24dc378acdd9cb1705c1fcfcf15dd1da8992de567a4cce85bc31e/DendroPy-3.7.1.tar.gz (from https://pypi.org/simple/dendropy/), version: 3.7.1 2024-05-22T14:04:28,728 Found link https://files.pythonhosted.org/packages/a2/f5/5c4fb1cde35799eeacb35ac289c271371a0c0fd3197548fab7e184900cc7/DendroPy-3.8.0.tar.gz (from https://pypi.org/simple/dendropy/), version: 3.8.0 2024-05-22T14:04:28,728 Found link https://files.pythonhosted.org/packages/95/73/7b1084d03e025b27c79342d6935810969edb86677ef3e5eb1f9e5aec1e6f/DendroPy-3.8.1.tar.gz (from https://pypi.org/simple/dendropy/), version: 3.8.1 2024-05-22T14:04:28,729 Found link https://files.pythonhosted.org/packages/18/2e/141c0d6a99905b9be3256aae6a87504f14853b20e40a6d89c7c4c465769d/DendroPy-3.9.0.tar.gz (from https://pypi.org/simple/dendropy/), version: 3.9.0 2024-05-22T14:04:28,730 Found link https://files.pythonhosted.org/packages/7e/08/a968b51274c8476084521f97af4e8fadd09a6b42a727141f502cc33767c5/DendroPy-3.10.0.tar.gz (from https://pypi.org/simple/dendropy/), version: 3.10.0 2024-05-22T14:04:28,731 Found link https://files.pythonhosted.org/packages/3a/26/552efe612d37cff025f1dd1350eb643edd6dda1cb628d7cbe572e343a049/DendroPy-3.10.1.tar.gz (from https://pypi.org/simple/dendropy/), version: 3.10.1 2024-05-22T14:04:28,731 Found link https://files.pythonhosted.org/packages/0f/3e/5549b668d04241c77c8f5b26f0c94a87ad93b6b9089fc6bcd510eba5d5f4/DendroPy-3.11.0.tar.gz (from https://pypi.org/simple/dendropy/), version: 3.11.0 2024-05-22T14:04:28,732 Found link https://files.pythonhosted.org/packages/43/22/69b7713b094697f8a432abe96c44a155519ef67b3c31221de32f4c3d5fa5/DendroPy-3.12.0.tar.gz (from https://pypi.org/simple/dendropy/), version: 3.12.0 2024-05-22T14:04:28,733 Found link https://files.pythonhosted.org/packages/5f/ae/14c92b087632944149cca61ec8daf41eee0083d0fad30c9248edb7e227d2/DendroPy-3.12.2.tar.gz (from https://pypi.org/simple/dendropy/), version: 3.12.2 2024-05-22T14:04:28,734 Found link https://files.pythonhosted.org/packages/3d/c0/e0a20d1cf4b268757842a03f36452095fccb8eae5ebd541548e29c6ca1e3/DendroPy-3.12.3.tar.gz (from https://pypi.org/simple/dendropy/), version: 3.12.3 2024-05-22T14:04:28,734 Found link https://files.pythonhosted.org/packages/f0/d3/e0180bf1a8d599b8f847ab7a1b19fe4d7a95b3613c57b57108e2a48bb59f/DendroPy-4.0.0.rc1.tar.gz (from https://pypi.org/simple/dendropy/), version: 4.0.0.rc1 2024-05-22T14:04:28,735 Found link https://files.pythonhosted.org/packages/55/dd/0d59b7bde4b230fadb999bc84cc45668a53733cb63e4aacf7e6ab4a9e175/DendroPy-4.0.0.tar.gz (from https://pypi.org/simple/dendropy/), version: 4.0.0 2024-05-22T14:04:28,736 Found link https://files.pythonhosted.org/packages/52/ba/02652626ed0d56afadc990e6540d998217831d856170ff0c68c3afbef866/DendroPy-4.0.1.tar.gz (from https://pypi.org/simple/dendropy/), version: 4.0.1 2024-05-22T14:04:28,737 Found link https://files.pythonhosted.org/packages/62/10/117c87b76f5f84d4559bd7ad25af04f11369ef8267f3c8e7d62769efc85d/DendroPy-4.0.2.tar.gz (from https://pypi.org/simple/dendropy/), version: 4.0.2 2024-05-22T14:04:28,738 Found link https://files.pythonhosted.org/packages/66/0b/72ca62a6e87ddb9b70cac2cf1fc199ca00127fc168c52bcbcbf30cfb5947/DendroPy-4.0.3.tar.gz (from https://pypi.org/simple/dendropy/), version: 4.0.3 2024-05-22T14:04:28,738 Found link https://files.pythonhosted.org/packages/65/3a/19556a58c560de488dffbf3c7fe7c9ed34c1a6223f0dfe971224a42aaf39/DendroPy-4.1.0.tar.gz (from https://pypi.org/simple/dendropy/), version: 4.1.0 2024-05-22T14:04:28,739 Found link https://files.pythonhosted.org/packages/e6/5a/d48c8d3f8100efd5eb6e6142f28bf1c13200e08882e59596369035ebc138/DendroPy-4.2.0.tar.gz (from https://pypi.org/simple/dendropy/), version: 4.2.0 2024-05-22T14:04:28,739 Found link https://files.pythonhosted.org/packages/58/14/d4559893d72675b322c1d60229ef3490bc5c2f5b28c5cc339956aaf8f507/DendroPy-4.3.0.tar.gz (from https://pypi.org/simple/dendropy/), version: 4.3.0 2024-05-22T14:04:28,740 Found link https://files.pythonhosted.org/packages/f5/21/17e4fbb1c2a68421eec43930b1e118660c7483229f1b28ba4402e8856884/DendroPy-4.4.0.tar.gz (from https://pypi.org/simple/dendropy/), version: 4.4.0 2024-05-22T14:04:28,740 Found link https://files.pythonhosted.org/packages/e0/f3/222e939e250e71234031d182e58704fff1c3296140f91f70d7ef8b3e17a6/DendroPy-4.5.1.tar.gz (from https://pypi.org/simple/dendropy/), version: 4.5.1 2024-05-22T14:04:28,741 Found link https://files.pythonhosted.org/packages/f9/10/125c181b1d97ffc4661a60ec897cfe058dc46cb53900d807819464c3510f/DendroPy-4.5.2.tar.gz (from https://pypi.org/simple/dendropy/), version: 4.5.2 2024-05-22T14:04:28,741 Skipping link: No binaries permitted for dendropy: https://files.pythonhosted.org/packages/b0/c0/841e46da39a4dae07a5cd4e7a1c9472acbdd623f820b125b5995dd342c9a/DendroPy-4.6.0-py3-none-any.whl (from https://pypi.org/simple/dendropy/) 2024-05-22T14:04:28,742 Found link https://files.pythonhosted.org/packages/8a/88/864aa93d31dd210e5b9bd79cfb3c9ddaf0bfab9b70dd212fb8247ab72f46/DendroPy-4.6.0.tar.gz (from https://pypi.org/simple/dendropy/), version: 4.6.0 2024-05-22T14:04:28,743 Skipping link: No binaries permitted for dendropy: https://files.pythonhosted.org/packages/7c/3b/f880fd07cb79a46ca838e46ba021fcdaa464bb21e2a9264a7afe77046a88/DendroPy-4.6.1-py3-none-any.whl (from https://pypi.org/simple/dendropy/) 2024-05-22T14:04:28,743 Found link https://files.pythonhosted.org/packages/35/fc/0ff301d0f2484b61f2cc46cfd7649c530cad6313c7f7a695f8cabff8a061/DendroPy-4.6.1.tar.gz (from https://pypi.org/simple/dendropy/), version: 4.6.1 2024-05-22T14:04:28,744 Skipping link: No binaries permitted for dendropy: https://files.pythonhosted.org/packages/a9/70/c715b8467b7cd08a847ad303ce8a2d236e001a526f37179fe77e503602cb/DendroPy-4.6.3-py3-none-any.whl (from https://pypi.org/simple/dendropy/) 2024-05-22T14:04:28,745 Found link https://files.pythonhosted.org/packages/52/f2/c8524894d8bbd5cfb4eca7c350e4407137bd11a752a152c62617ce6f6b76/DendroPy-4.6.3.tar.gz (from https://pypi.org/simple/dendropy/), version: 4.6.3 2024-05-22T14:04:28,745 Skipping link: No binaries permitted for dendropy: https://files.pythonhosted.org/packages/f1/f5/fb4483829a7a9b08c974281d2519d110b69284a43dec7ae320e9971fe4f5/DendroPy-4.6.4-py3-none-any.whl (from https://pypi.org/simple/dendropy/) 2024-05-22T14:04:28,746 Found link https://files.pythonhosted.org/packages/29/7a/0e09e052a746c9e97e45d6e0803e705e13426aa01a13ab845f6108ea4fd5/DendroPy-4.6.4.tar.gz (from https://pypi.org/simple/dendropy/), version: 4.6.4 2024-05-22T14:04:28,747 Skipping link: No binaries permitted for dendropy: https://files.pythonhosted.org/packages/54/2a/e95f42bcc16806f5f5ed49ed8b613830c3831e8a1ecea845756b882672e1/DendroPy-5.0.0-py3-none-any.whl (from https://pypi.org/simple/dendropy/) (requires-python:>=3.6) 2024-05-22T14:04:28,748 Found link https://files.pythonhosted.org/packages/96/33/c3a06df7aec829e8b79b91503708d750d9c4842cfc4377ae215c1e61d97d/DendroPy-5.0.0.tar.gz (from https://pypi.org/simple/dendropy/) (requires-python:>=3.6), version: 5.0.0 2024-05-22T14:04:28,749 Fetching project page and analyzing links: https://www.piwheels.org/simple/dendropy/ 2024-05-22T14:04:28,749 Getting page https://www.piwheels.org/simple/dendropy/ 2024-05-22T14:04:28,751 Found index url https://www.piwheels.org/simple/ 2024-05-22T14:04:28,971 Fetched page https://www.piwheels.org/simple/dendropy/ as text/html 2024-05-22T14:04:28,976 Skipping link: No binaries permitted for dendropy: https://www.piwheels.org/simple/dendropy/DendroPy-4.6.4-py3-none-any.whl#sha256=f400bcc098632c539bc34d194679fbd3c544fcd4ac1410b8fbfab1e17ffb6a84 (from https://www.piwheels.org/simple/dendropy/) 2024-05-22T14:04:28,977 Skipping link: No binaries permitted for dendropy: https://www.piwheels.org/simple/dendropy/DendroPy-4.6.3-py3-none-any.whl#sha256=55d64c6747ef5feb8125c6b3ba58937d2c93874d1ae798501c4b5a3d6cd56cc2 (from https://www.piwheels.org/simple/dendropy/) 2024-05-22T14:04:28,977 Skipping link: No binaries permitted for dendropy: https://www.piwheels.org/simple/dendropy/DendroPy-4.6.1-py3-none-any.whl#sha256=da58df7fced8722b607b168cb9ffec744a299b5ebdebb62786835351122e5236 (from https://www.piwheels.org/simple/dendropy/) 2024-05-22T14:04:28,978 Skipping link: No binaries permitted for dendropy: https://www.piwheels.org/simple/dendropy/DendroPy-4.6.0-py3-none-any.whl#sha256=967847ceda8c3c50c9c82bf0b17ad1cfed383857502a32878e1870fde0b9f662 (from https://www.piwheels.org/simple/dendropy/) 2024-05-22T14:04:28,978 Skipping link: No binaries permitted for dendropy: https://www.piwheels.org/simple/dendropy/DendroPy-4.5.2-py3-none-any.whl#sha256=7492efc1d60e0d280a9effe9093dd14da694300275c2dbc2c3cd116390521bc3 (from https://www.piwheels.org/simple/dendropy/) 2024-05-22T14:04:28,979 Skipping link: No binaries permitted for dendropy: https://www.piwheels.org/simple/dendropy/DendroPy-4.5.1-py3-none-any.whl#sha256=0113d22b31642c3c63327d0eab46f2aff2079181bb537c2007796802874bed73 (from https://www.piwheels.org/simple/dendropy/) 2024-05-22T14:04:28,979 Skipping link: No binaries permitted for dendropy: https://www.piwheels.org/simple/dendropy/DendroPy-4.4.0-py3-none-any.whl#sha256=04bb1c1125a9435d6f61e956aaa59a6789d16640f9371e367f6182331570eeb9 (from https://www.piwheels.org/simple/dendropy/) 2024-05-22T14:04:28,980 Skipping link: No binaries permitted for dendropy: https://www.piwheels.org/simple/dendropy/DendroPy-4.3.0-py3-none-any.whl#sha256=b762edba2a883b8a9549d498742e7ffe9126f33855d270fc0fa42c0ffd77e224 (from https://www.piwheels.org/simple/dendropy/) 2024-05-22T14:04:28,981 Skipping link: No binaries permitted for dendropy: https://www.piwheels.org/simple/dendropy/DendroPy-4.2.0-py3-none-any.whl#sha256=b708e09e2b790f482496fd2e17b5159e212994a6d7d234771e2c9e5e208aa55e (from https://www.piwheels.org/simple/dendropy/) 2024-05-22T14:04:28,981 Skipping link: No binaries permitted for dendropy: https://www.piwheels.org/simple/dendropy/DendroPy-4.1.0-py3-none-any.whl#sha256=1b13aa093d01409bfb95728a68dbff117529dc40cd5ac6fa4d4fc30756ef5357 (from https://www.piwheels.org/simple/dendropy/) 2024-05-22T14:04:28,982 Skipping link: No binaries permitted for dendropy: https://www.piwheels.org/simple/dendropy/DendroPy-4.0.3-py3-none-any.whl#sha256=eea9ba2017437bada349db5b12b6d9c8c6dfcbfea1832bac2a862b3c5503ceb3 (from https://www.piwheels.org/simple/dendropy/) 2024-05-22T14:04:28,982 Skipping link: No binaries permitted for dendropy: https://www.piwheels.org/simple/dendropy/DendroPy-4.0.2-py3-none-any.whl#sha256=81648919d17fb5fdc36f4053aff572b4a2d358a189d2462e15aab8760eb71d1a (from https://www.piwheels.org/simple/dendropy/) 2024-05-22T14:04:28,983 Skipping link: No binaries permitted for dendropy: https://www.piwheels.org/simple/dendropy/DendroPy-4.0.1-py3-none-any.whl#sha256=4ba8a912afd561e3116cdfbcd6c168cafc69eec3339bfdb79858e93000402410 (from https://www.piwheels.org/simple/dendropy/) 2024-05-22T14:04:28,984 Skipping link: No binaries permitted for dendropy: https://www.piwheels.org/simple/dendropy/DendroPy-4.0.0-py3-none-any.whl#sha256=4687108db4e411473e5ccce4ec9a99fc10ad22b8da4c6e817154202a3e6cc0e9 (from https://www.piwheels.org/simple/dendropy/) 2024-05-22T14:04:28,984 Skipping link: No binaries permitted for dendropy: https://www.piwheels.org/simple/dendropy/DendroPy-4.0.0rc1-py3-none-any.whl#sha256=0310d7072108356c0655941033b16778503a2c6ec2d84ac1eeb88a41eb92a543 (from https://www.piwheels.org/simple/dendropy/) 2024-05-22T14:04:28,985 Skipping link: not a file: https://www.piwheels.org/simple/dendropy/ 2024-05-22T14:04:28,985 Skipping link: not a file: https://pypi.org/simple/dendropy/ 2024-05-22T14:04:29,007 Given no hashes to check 1 links for project 'dendropy': discarding no candidates 2024-05-22T14:04:29,025 Collecting dendropy==5.0.0 2024-05-22T14:04:29,027 Created temporary directory: /tmp/pip-unpack-3j0pr5wi 2024-05-22T14:04:29,246 Downloading DendroPy-5.0.0.tar.gz (394 kB) 2024-05-22T14:04:29,777 Added dendropy==5.0.0 from https://files.pythonhosted.org/packages/96/33/c3a06df7aec829e8b79b91503708d750d9c4842cfc4377ae215c1e61d97d/DendroPy-5.0.0.tar.gz to build tracker '/tmp/pip-build-tracker-4hll5545' 2024-05-22T14:04:29,780 Running setup.py (path:/tmp/pip-wheel-ugpai05c/dendropy_4149543f08bf4247a7974700a91322da/setup.py) egg_info for package dendropy 2024-05-22T14:04:29,781 Created temporary directory: /tmp/pip-pip-egg-info-9rs2gw2f 2024-05-22T14:04:29,782 Preparing metadata (setup.py): started 2024-05-22T14:04:29,783 Running command python setup.py egg_info 2024-05-22T14:04:30,583 /usr/local/lib/python3.11/dist-packages/setuptools/__init__.py:81: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. 2024-05-22T14:04:30,583 !! 2024-05-22T14:04:30,584 ******************************************************************************** 2024-05-22T14:04:30,585 Requirements should be satisfied by a PEP 517 installer. 2024-05-22T14:04:30,585 If you are using pip, you can try `pip install --use-pep517`. 2024-05-22T14:04:30,586 ******************************************************************************** 2024-05-22T14:04:30,587 !! 2024-05-22T14:04:30,588 dist.fetch_build_eggs(dist.setup_requires) 2024-05-22T14:04:33,636 running egg_info 2024-05-22T14:04:33,637 creating /tmp/pip-pip-egg-info-9rs2gw2f/DendroPy.egg-info 2024-05-22T14:04:33,664 writing /tmp/pip-pip-egg-info-9rs2gw2f/DendroPy.egg-info/PKG-INFO 2024-05-22T14:04:33,668 writing dependency_links to /tmp/pip-pip-egg-info-9rs2gw2f/DendroPy.egg-info/dependency_links.txt 2024-05-22T14:04:33,670 writing entry points to /tmp/pip-pip-egg-info-9rs2gw2f/DendroPy.egg-info/entry_points.txt 2024-05-22T14:04:33,671 writing requirements to /tmp/pip-pip-egg-info-9rs2gw2f/DendroPy.egg-info/requires.txt 2024-05-22T14:04:33,672 writing top-level names to /tmp/pip-pip-egg-info-9rs2gw2f/DendroPy.egg-info/top_level.txt 2024-05-22T14:04:33,674 writing manifest file '/tmp/pip-pip-egg-info-9rs2gw2f/DendroPy.egg-info/SOURCES.txt' 2024-05-22T14:04:33,799 reading manifest file '/tmp/pip-pip-egg-info-9rs2gw2f/DendroPy.egg-info/SOURCES.txt' 2024-05-22T14:04:33,801 reading manifest template 'MANIFEST.in' 2024-05-22T14:04:33,803 warning: no files found matching 'doc/Makefile' 2024-05-22T14:04:33,803 warning: no files found matching '*' under directory 'doc/source' 2024-05-22T14:04:33,804 warning: no files found matching '*' under directory 'tests/data' 2024-05-22T14:04:33,805 warning: no previously-included files matching '.DS_Store' found anywhere in distribution 2024-05-22T14:04:33,805 warning: no previously-included files matching '*.pyc' found anywhere in distribution 2024-05-22T14:04:33,806 warning: no previously-included files matching '.gitignore' found anywhere in distribution 2024-05-22T14:04:33,807 warning: no previously-included files matching '.gitattributes' found anywhere in distribution 2024-05-22T14:04:33,807 warning: no previously-included files matching '.idea' found anywhere in distribution 2024-05-22T14:04:33,808 warning: no previously-included files matching '__pycache__' found anywhere in distribution 2024-05-22T14:04:33,809 adding license file 'LICENSE.rst' 2024-05-22T14:04:33,809 adding license file 'AUTHORS.rst' 2024-05-22T14:04:33,814 writing manifest file '/tmp/pip-pip-egg-info-9rs2gw2f/DendroPy.egg-info/SOURCES.txt' 2024-05-22T14:04:33,934 Preparing metadata (setup.py): finished with status 'done' 2024-05-22T14:04:33,938 Source in /tmp/pip-wheel-ugpai05c/dendropy_4149543f08bf4247a7974700a91322da has version 5.0.0, which satisfies requirement dendropy==5.0.0 from https://files.pythonhosted.org/packages/96/33/c3a06df7aec829e8b79b91503708d750d9c4842cfc4377ae215c1e61d97d/DendroPy-5.0.0.tar.gz 2024-05-22T14:04:33,939 Removed dendropy==5.0.0 from https://files.pythonhosted.org/packages/96/33/c3a06df7aec829e8b79b91503708d750d9c4842cfc4377ae215c1e61d97d/DendroPy-5.0.0.tar.gz from build tracker '/tmp/pip-build-tracker-4hll5545' 2024-05-22T14:04:33,945 Created temporary directory: /tmp/pip-unpack-6sd6xh8w 2024-05-22T14:04:33,947 Created temporary directory: /tmp/pip-unpack-lq6lq41d 2024-05-22T14:04:33,952 Building wheels for collected packages: dendropy 2024-05-22T14:04:33,956 Created temporary directory: /tmp/pip-wheel-at2pjoma 2024-05-22T14:04:33,957 Building wheel for dendropy (setup.py): started 2024-05-22T14:04:33,958 Destination directory: /tmp/pip-wheel-at2pjoma 2024-05-22T14:04:33,958 Running command python setup.py bdist_wheel 2024-05-22T14:04:34,698 /usr/local/lib/python3.11/dist-packages/setuptools/__init__.py:81: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. 2024-05-22T14:04:34,698 !! 2024-05-22T14:04:34,700 ******************************************************************************** 2024-05-22T14:04:34,700 Requirements should be satisfied by a PEP 517 installer. 2024-05-22T14:04:34,701 If you are using pip, you can try `pip install --use-pep517`. 2024-05-22T14:04:34,702 ******************************************************************************** 2024-05-22T14:04:34,703 !! 2024-05-22T14:04:34,704 dist.fetch_build_eggs(dist.setup_requires) 2024-05-22T14:04:35,229 running bdist_wheel 2024-05-22T14:04:35,333 running build 2024-05-22T14:04:35,333 running build_py 2024-05-22T14:04:35,362 creating build 2024-05-22T14:04:35,363 creating build/lib 2024-05-22T14:04:35,364 creating build/lib/dendropy 2024-05-22T14:04:35,365 copying src/dendropy/__main__.py -> build/lib/dendropy 2024-05-22T14:04:35,367 copying src/dendropy/__init__.py -> build/lib/dendropy 2024-05-22T14:04:35,370 creating build/lib/dendropy/calculate 2024-05-22T14:04:35,371 copying src/dendropy/calculate/profiledistance.py -> build/lib/dendropy/calculate 2024-05-22T14:04:35,374 copying src/dendropy/calculate/treecompare.py -> build/lib/dendropy/calculate 2024-05-22T14:04:35,378 copying src/dendropy/calculate/probability.py -> build/lib/dendropy/calculate 2024-05-22T14:04:35,380 copying src/dendropy/calculate/treemeasure.py -> build/lib/dendropy/calculate 2024-05-22T14:04:35,383 copying src/dendropy/calculate/phylogeneticdistance.py -> build/lib/dendropy/calculate 2024-05-22T14:04:35,387 copying src/dendropy/calculate/combinatorics.py -> build/lib/dendropy/calculate 2024-05-22T14:04:35,389 copying src/dendropy/calculate/mathfn.py -> build/lib/dendropy/calculate 2024-05-22T14:04:35,391 copying src/dendropy/calculate/popgenstat.py -> build/lib/dendropy/calculate 2024-05-22T14:04:35,394 copying src/dendropy/calculate/statistics.py -> build/lib/dendropy/calculate 2024-05-22T14:04:35,396 copying src/dendropy/calculate/__init__.py -> build/lib/dendropy/calculate 2024-05-22T14:04:35,398 copying src/dendropy/calculate/treesum.py -> build/lib/dendropy/calculate 2024-05-22T14:04:35,401 copying src/dendropy/calculate/treescore.py -> build/lib/dendropy/calculate 2024-05-22T14:04:35,404 creating build/lib/dendropy/dataio 2024-05-22T14:04:35,405 copying src/dendropy/dataio/nexusyielder.py -> build/lib/dendropy/dataio 2024-05-22T14:04:35,408 copying src/dendropy/dataio/newickreader.py -> build/lib/dendropy/dataio 2024-05-22T14:04:35,411 copying src/dendropy/dataio/newick.py -> build/lib/dendropy/dataio 2024-05-22T14:04:35,412 copying src/dendropy/dataio/fastawriter.py -> build/lib/dendropy/dataio 2024-05-22T14:04:35,414 copying src/dendropy/dataio/phylipwriter.py -> build/lib/dendropy/dataio 2024-05-22T14:04:35,417 copying src/dendropy/dataio/newickyielder.py -> build/lib/dendropy/dataio 2024-05-22T14:04:35,419 copying src/dendropy/dataio/fastareader.py -> build/lib/dendropy/dataio 2024-05-22T14:04:35,421 copying src/dendropy/dataio/tokenizer.py -> build/lib/dendropy/dataio 2024-05-22T14:04:35,424 copying src/dendropy/dataio/xmlprocessing.py -> build/lib/dendropy/dataio 2024-05-22T14:04:35,426 copying src/dendropy/dataio/nexusreader.py -> build/lib/dendropy/dataio 2024-05-22T14:04:35,430 copying src/dendropy/dataio/multiphylipreader.py -> build/lib/dendropy/dataio 2024-05-22T14:04:35,432 copying src/dendropy/dataio/nexuswriter.py -> build/lib/dendropy/dataio 2024-05-22T14:04:35,435 copying src/dendropy/dataio/nexmlreader.py -> build/lib/dendropy/dataio 2024-05-22T14:04:35,438 copying src/dendropy/dataio/ioservice.py -> build/lib/dendropy/dataio 2024-05-22T14:04:35,441 copying src/dendropy/dataio/phylipreader.py -> build/lib/dendropy/dataio 2024-05-22T14:04:35,444 copying src/dendropy/dataio/newickwriter.py -> build/lib/dendropy/dataio 2024-05-22T14:04:35,447 copying src/dendropy/dataio/nexmlwriter.py -> build/lib/dendropy/dataio 2024-05-22T14:04:35,449 copying src/dendropy/dataio/nexusprocessing.py -> build/lib/dendropy/dataio 2024-05-22T14:04:35,452 copying src/dendropy/dataio/nexmlyielder.py -> build/lib/dendropy/dataio 2024-05-22T14:04:35,454 copying src/dendropy/dataio/__init__.py -> build/lib/dendropy/dataio 2024-05-22T14:04:35,457 creating build/lib/dendropy/model 2024-05-22T14:04:35,459 copying src/dendropy/model/multispeciescoalescent.py -> build/lib/dendropy/model 2024-05-22T14:04:35,462 copying src/dendropy/model/protractedspeciation.py -> build/lib/dendropy/model 2024-05-22T14:04:35,466 copying src/dendropy/model/continuous.py -> build/lib/dendropy/model 2024-05-22T14:04:35,469 copying src/dendropy/model/discrete.py -> build/lib/dendropy/model 2024-05-22T14:04:35,472 copying src/dendropy/model/parsimony.py -> build/lib/dendropy/model 2024-05-22T14:04:35,475 copying src/dendropy/model/birthdeath.py -> build/lib/dendropy/model 2024-05-22T14:04:35,479 copying src/dendropy/model/treeshape.py -> build/lib/dendropy/model 2024-05-22T14:04:35,481 copying src/dendropy/model/__init__.py -> build/lib/dendropy/model 2024-05-22T14:04:35,483 copying src/dendropy/model/coalescent.py -> build/lib/dendropy/model 2024-05-22T14:04:35,486 copying src/dendropy/model/reconcile.py -> build/lib/dendropy/model 2024-05-22T14:04:35,490 creating build/lib/dendropy/utility 2024-05-22T14:04:35,492 copying src/dendropy/utility/metavar.py -> build/lib/dendropy/utility 2024-05-22T14:04:35,494 copying src/dendropy/utility/bibtex.py -> build/lib/dendropy/utility 2024-05-22T14:04:35,496 copying src/dendropy/utility/bitprocessing.py -> build/lib/dendropy/utility 2024-05-22T14:04:35,498 copying src/dendropy/utility/vcsinfo.py -> build/lib/dendropy/utility 2024-05-22T14:04:35,501 copying src/dendropy/utility/textprocessing.py -> build/lib/dendropy/utility 2024-05-22T14:04:35,503 copying src/dendropy/utility/constants.py -> build/lib/dendropy/utility 2024-05-22T14:04:35,505 copying src/dendropy/utility/container.py -> build/lib/dendropy/utility 2024-05-22T14:04:35,509 copying src/dendropy/utility/processio.py -> build/lib/dendropy/utility 2024-05-22T14:04:35,511 copying src/dendropy/utility/urlio.py -> build/lib/dendropy/utility 2024-05-22T14:04:35,513 copying src/dendropy/utility/timeprocessing.py -> build/lib/dendropy/utility 2024-05-22T14:04:35,515 copying src/dendropy/utility/deprecate.py -> build/lib/dendropy/utility 2024-05-22T14:04:35,517 copying src/dendropy/utility/terminal.py -> build/lib/dendropy/utility 2024-05-22T14:04:35,519 copying src/dendropy/utility/filesys.py -> build/lib/dendropy/utility 2024-05-22T14:04:35,522 copying src/dendropy/utility/cli.py -> build/lib/dendropy/utility 2024-05-22T14:04:35,524 copying src/dendropy/utility/error.py -> build/lib/dendropy/utility 2024-05-22T14:04:35,527 copying src/dendropy/utility/__init__.py -> build/lib/dendropy/utility 2024-05-22T14:04:35,529 copying src/dendropy/utility/messaging.py -> build/lib/dendropy/utility 2024-05-22T14:04:35,531 copying src/dendropy/utility/debug.py -> build/lib/dendropy/utility 2024-05-22T14:04:35,534 creating build/lib/dendropy/application 2024-05-22T14:04:35,535 copying src/dendropy/application/dendropy_format.py -> build/lib/dendropy/application 2024-05-22T14:04:35,537 copying src/dendropy/application/sumlabels.py -> build/lib/dendropy/application 2024-05-22T14:04:35,540 copying src/dendropy/application/sumtrees.py -> build/lib/dendropy/application 2024-05-22T14:04:35,546 copying src/dendropy/application/__init__.py -> build/lib/dendropy/application 2024-05-22T14:04:35,548 creating build/lib/dendropy/mathlib 2024-05-22T14:04:35,549 copying src/dendropy/mathlib/probability.py -> build/lib/dendropy/mathlib 2024-05-22T14:04:35,551 copying src/dendropy/mathlib/mathfn.py -> build/lib/dendropy/mathlib 2024-05-22T14:04:35,553 copying src/dendropy/mathlib/statistics.py -> build/lib/dendropy/mathlib 2024-05-22T14:04:35,555 copying src/dendropy/mathlib/__init__.py -> build/lib/dendropy/mathlib 2024-05-22T14:04:35,558 creating build/lib/dendropy/datamodel 2024-05-22T14:04:35,559 copying src/dendropy/datamodel/charmatrixmodel.py -> build/lib/dendropy/datamodel 2024-05-22T14:04:35,564 copying src/dendropy/datamodel/taxonmodel.py -> build/lib/dendropy/datamodel 2024-05-22T14:04:35,570 copying src/dendropy/datamodel/charstatemodel.py -> build/lib/dendropy/datamodel 2024-05-22T14:04:35,575 copying src/dendropy/datamodel/treecollectionmodel.py -> build/lib/dendropy/datamodel 2024-05-22T14:04:35,582 copying src/dendropy/datamodel/datasetmodel.py -> build/lib/dendropy/datamodel 2024-05-22T14:04:35,585 copying src/dendropy/datamodel/__init__.py -> build/lib/dendropy/datamodel 2024-05-22T14:04:35,587 copying src/dendropy/datamodel/basemodel.py -> build/lib/dendropy/datamodel 2024-05-22T14:04:35,591 creating build/lib/dendropy/simulate 2024-05-22T14:04:35,592 copying src/dendropy/simulate/charsim.py -> build/lib/dendropy/simulate 2024-05-22T14:04:35,594 copying src/dendropy/simulate/popgensim.py -> build/lib/dendropy/simulate 2024-05-22T14:04:35,597 copying src/dendropy/simulate/treesim.py -> build/lib/dendropy/simulate 2024-05-22T14:04:35,598 copying src/dendropy/simulate/__init__.py -> build/lib/dendropy/simulate 2024-05-22T14:04:35,601 creating build/lib/dendropy/interop 2024-05-22T14:04:35,602 copying src/dendropy/interop/gbif.py -> build/lib/dendropy/interop 2024-05-22T14:04:35,604 copying src/dendropy/interop/itol.py -> build/lib/dendropy/interop 2024-05-22T14:04:35,609 copying src/dendropy/interop/genbank.py -> build/lib/dendropy/interop 2024-05-22T14:04:35,624 copying src/dendropy/interop/ape.py -> build/lib/dendropy/interop 2024-05-22T14:04:35,627 copying src/dendropy/interop/rspr.py -> build/lib/dendropy/interop 2024-05-22T14:04:35,629 copying src/dendropy/interop/biopython.py -> build/lib/dendropy/interop 2024-05-22T14:04:35,631 copying src/dendropy/interop/entrez.py -> build/lib/dendropy/interop 2024-05-22T14:04:35,633 copying src/dendropy/interop/muscle.py -> build/lib/dendropy/interop 2024-05-22T14:04:35,635 copying src/dendropy/interop/rstats.py -> build/lib/dendropy/interop 2024-05-22T14:04:35,637 copying src/dendropy/interop/__init__.py -> build/lib/dendropy/interop 2024-05-22T14:04:35,639 copying src/dendropy/interop/paup.py -> build/lib/dendropy/interop 2024-05-22T14:04:35,642 copying src/dendropy/interop/ete.py -> build/lib/dendropy/interop 2024-05-22T14:04:35,644 copying src/dendropy/interop/raxml.py -> build/lib/dendropy/interop 2024-05-22T14:04:35,648 copying src/dendropy/interop/seqgen.py -> build/lib/dendropy/interop 2024-05-22T14:04:35,651 creating build/lib/dendropy/legacy 2024-05-22T14:04:35,652 copying src/dendropy/legacy/seqmodel.py -> build/lib/dendropy/legacy 2024-05-22T14:04:35,654 copying src/dendropy/legacy/continuous.py -> build/lib/dendropy/legacy 2024-05-22T14:04:35,656 copying src/dendropy/legacy/ncbi.py -> build/lib/dendropy/legacy 2024-05-22T14:04:35,658 copying src/dendropy/legacy/popgensim.py -> build/lib/dendropy/legacy 2024-05-22T14:04:35,659 copying src/dendropy/legacy/treesim.py -> build/lib/dendropy/legacy 2024-05-22T14:04:35,662 copying src/dendropy/legacy/popgenstat.py -> build/lib/dendropy/legacy 2024-05-22T14:04:35,663 copying src/dendropy/legacy/treecalc.py -> build/lib/dendropy/legacy 2024-05-22T14:04:35,666 copying src/dendropy/legacy/__init__.py -> build/lib/dendropy/legacy 2024-05-22T14:04:35,667 copying src/dendropy/legacy/coalescent.py -> build/lib/dendropy/legacy 2024-05-22T14:04:35,669 copying src/dendropy/legacy/reconcile.py -> build/lib/dendropy/legacy 2024-05-22T14:04:35,671 copying src/dendropy/legacy/treesplit.py -> build/lib/dendropy/legacy 2024-05-22T14:04:35,673 copying src/dendropy/legacy/treemanip.py -> build/lib/dendropy/legacy 2024-05-22T14:04:35,675 copying src/dendropy/legacy/seqsim.py -> build/lib/dendropy/legacy 2024-05-22T14:04:35,677 copying src/dendropy/legacy/treesum.py -> build/lib/dendropy/legacy 2024-05-22T14:04:35,679 creating build/lib/dendropy/utility/libexec 2024-05-22T14:04:35,680 copying src/dendropy/utility/libexec/__init__.py -> build/lib/dendropy/utility/libexec 2024-05-22T14:04:35,682 creating build/lib/dendropy/datamodel/treemodel 2024-05-22T14:04:35,684 copying src/dendropy/datamodel/treemodel/_edge.py -> build/lib/dendropy/datamodel/treemodel 2024-05-22T14:04:35,687 copying src/dendropy/datamodel/treemodel/_node.py -> build/lib/dendropy/datamodel/treemodel 2024-05-22T14:04:35,692 copying src/dendropy/datamodel/treemodel/_bipartition.py -> build/lib/dendropy/datamodel/treemodel 2024-05-22T14:04:35,696 copying src/dendropy/datamodel/treemodel/__init__.py -> build/lib/dendropy/datamodel/treemodel 2024-05-22T14:04:35,698 copying src/dendropy/datamodel/treemodel/_tree.py -> build/lib/dendropy/datamodel/treemodel 2024-05-22T14:04:35,706 running egg_info 2024-05-22T14:04:35,760 writing src/DendroPy.egg-info/PKG-INFO 2024-05-22T14:04:35,764 writing dependency_links to src/DendroPy.egg-info/dependency_links.txt 2024-05-22T14:04:35,766 writing entry points to src/DendroPy.egg-info/entry_points.txt 2024-05-22T14:04:35,768 writing requirements to src/DendroPy.egg-info/requires.txt 2024-05-22T14:04:35,769 writing top-level names to src/DendroPy.egg-info/top_level.txt 2024-05-22T14:04:35,825 reading manifest file 'src/DendroPy.egg-info/SOURCES.txt' 2024-05-22T14:04:35,830 reading manifest template 'MANIFEST.in' 2024-05-22T14:04:35,831 warning: no files found matching 'doc/Makefile' 2024-05-22T14:04:35,831 warning: no files found matching '*' under directory 'doc/source' 2024-05-22T14:04:35,832 warning: no files found matching '*' under directory 'tests/data' 2024-05-22T14:04:35,832 warning: no previously-included files matching '.DS_Store' found anywhere in distribution 2024-05-22T14:04:35,833 warning: no previously-included files matching '*.pyc' found anywhere in distribution 2024-05-22T14:04:35,834 warning: no previously-included files matching '.gitignore' found anywhere in distribution 2024-05-22T14:04:35,835 warning: no previously-included files matching '.gitattributes' found anywhere in distribution 2024-05-22T14:04:35,836 warning: no previously-included files matching '.idea' found anywhere in distribution 2024-05-22T14:04:35,837 warning: no previously-included files matching '__pycache__' found anywhere in distribution 2024-05-22T14:04:35,837 adding license file 'LICENSE.rst' 2024-05-22T14:04:35,838 adding license file 'AUTHORS.rst' 2024-05-22T14:04:35,843 writing manifest file 'src/DendroPy.egg-info/SOURCES.txt' 2024-05-22T14:04:35,894 /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. 2024-05-22T14:04:35,895 !! 2024-05-22T14:04:35,896 ******************************************************************************** 2024-05-22T14:04:35,896 Please avoid running ``setup.py`` directly. 2024-05-22T14:04:35,897 Instead, use pypa/build, pypa/installer or other 2024-05-22T14:04:35,897 standards-based tools. 2024-05-22T14:04:35,898 See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. 2024-05-22T14:04:35,898 ******************************************************************************** 2024-05-22T14:04:35,899 !! 2024-05-22T14:04:35,900 self.initialize_options() 2024-05-22T14:04:35,920 installing to build/bdist.linux-armv7l/wheel 2024-05-22T14:04:35,921 running install 2024-05-22T14:04:35,946 running install_lib 2024-05-22T14:04:35,972 creating build/bdist.linux-armv7l 2024-05-22T14:04:35,973 creating build/bdist.linux-armv7l/wheel 2024-05-22T14:04:35,974 creating build/bdist.linux-armv7l/wheel/dendropy 2024-05-22T14:04:35,976 creating build/bdist.linux-armv7l/wheel/dendropy/calculate 2024-05-22T14:04:35,977 copying build/lib/dendropy/calculate/profiledistance.py -> build/bdist.linux-armv7l/wheel/dendropy/calculate 2024-05-22T14:04:35,979 copying build/lib/dendropy/calculate/treecompare.py -> build/bdist.linux-armv7l/wheel/dendropy/calculate 2024-05-22T14:04:35,983 copying build/lib/dendropy/calculate/probability.py -> build/bdist.linux-armv7l/wheel/dendropy/calculate 2024-05-22T14:04:35,985 copying build/lib/dendropy/calculate/treemeasure.py -> build/bdist.linux-armv7l/wheel/dendropy/calculate 2024-05-22T14:04:35,989 copying build/lib/dendropy/calculate/phylogeneticdistance.py -> build/bdist.linux-armv7l/wheel/dendropy/calculate 2024-05-22T14:04:35,993 copying build/lib/dendropy/calculate/combinatorics.py -> build/bdist.linux-armv7l/wheel/dendropy/calculate 2024-05-22T14:04:35,995 copying build/lib/dendropy/calculate/mathfn.py -> build/bdist.linux-armv7l/wheel/dendropy/calculate 2024-05-22T14:04:35,997 copying build/lib/dendropy/calculate/popgenstat.py -> build/bdist.linux-armv7l/wheel/dendropy/calculate 2024-05-22T14:04:36,001 copying build/lib/dendropy/calculate/statistics.py -> build/bdist.linux-armv7l/wheel/dendropy/calculate 2024-05-22T14:04:36,004 copying build/lib/dendropy/calculate/__init__.py -> build/bdist.linux-armv7l/wheel/dendropy/calculate 2024-05-22T14:04:36,005 copying build/lib/dendropy/calculate/treesum.py -> build/bdist.linux-armv7l/wheel/dendropy/calculate 2024-05-22T14:04:36,009 copying build/lib/dendropy/calculate/treescore.py -> build/bdist.linux-armv7l/wheel/dendropy/calculate 2024-05-22T14:04:36,011 creating build/bdist.linux-armv7l/wheel/dendropy/dataio 2024-05-22T14:04:36,012 copying build/lib/dendropy/dataio/nexusyielder.py -> build/bdist.linux-armv7l/wheel/dendropy/dataio 2024-05-22T14:04:36,016 copying build/lib/dendropy/dataio/newickreader.py -> build/bdist.linux-armv7l/wheel/dendropy/dataio 2024-05-22T14:04:36,019 copying build/lib/dendropy/dataio/newick.py -> build/bdist.linux-armv7l/wheel/dendropy/dataio 2024-05-22T14:04:36,021 copying build/lib/dendropy/dataio/fastawriter.py -> build/bdist.linux-armv7l/wheel/dendropy/dataio 2024-05-22T14:04:36,023 copying build/lib/dendropy/dataio/phylipwriter.py -> build/bdist.linux-armv7l/wheel/dendropy/dataio 2024-05-22T14:04:36,026 copying build/lib/dendropy/dataio/newickyielder.py -> build/bdist.linux-armv7l/wheel/dendropy/dataio 2024-05-22T14:04:36,028 copying build/lib/dendropy/dataio/fastareader.py -> build/bdist.linux-armv7l/wheel/dendropy/dataio 2024-05-22T14:04:36,030 copying build/lib/dendropy/dataio/tokenizer.py -> build/bdist.linux-armv7l/wheel/dendropy/dataio 2024-05-22T14:04:36,033 copying build/lib/dendropy/dataio/xmlprocessing.py -> build/bdist.linux-armv7l/wheel/dendropy/dataio 2024-05-22T14:04:36,036 copying build/lib/dendropy/dataio/nexusreader.py -> build/bdist.linux-armv7l/wheel/dendropy/dataio 2024-05-22T14:04:36,040 copying build/lib/dendropy/dataio/multiphylipreader.py -> build/bdist.linux-armv7l/wheel/dendropy/dataio 2024-05-22T14:04:36,041 copying build/lib/dendropy/dataio/nexuswriter.py -> build/bdist.linux-armv7l/wheel/dendropy/dataio 2024-05-22T14:04:36,044 copying build/lib/dendropy/dataio/nexmlreader.py -> build/bdist.linux-armv7l/wheel/dendropy/dataio 2024-05-22T14:04:36,047 copying build/lib/dendropy/dataio/ioservice.py -> build/bdist.linux-armv7l/wheel/dendropy/dataio 2024-05-22T14:04:36,050 copying build/lib/dendropy/dataio/phylipreader.py -> build/bdist.linux-armv7l/wheel/dendropy/dataio 2024-05-22T14:04:36,053 copying build/lib/dendropy/dataio/newickwriter.py -> build/bdist.linux-armv7l/wheel/dendropy/dataio 2024-05-22T14:04:36,056 copying build/lib/dendropy/dataio/nexmlwriter.py -> build/bdist.linux-armv7l/wheel/dendropy/dataio 2024-05-22T14:04:36,059 copying build/lib/dendropy/dataio/nexusprocessing.py -> build/bdist.linux-armv7l/wheel/dendropy/dataio 2024-05-22T14:04:36,062 copying build/lib/dendropy/dataio/nexmlyielder.py -> build/bdist.linux-armv7l/wheel/dendropy/dataio 2024-05-22T14:04:36,064 copying build/lib/dendropy/dataio/__init__.py -> build/bdist.linux-armv7l/wheel/dendropy/dataio 2024-05-22T14:04:36,067 creating build/bdist.linux-armv7l/wheel/dendropy/model 2024-05-22T14:04:36,068 copying build/lib/dendropy/model/multispeciescoalescent.py -> build/bdist.linux-armv7l/wheel/dendropy/model 2024-05-22T14:04:36,070 copying build/lib/dendropy/model/protractedspeciation.py -> build/bdist.linux-armv7l/wheel/dendropy/model 2024-05-22T14:04:36,073 copying build/lib/dendropy/model/continuous.py -> build/bdist.linux-armv7l/wheel/dendropy/model 2024-05-22T14:04:36,076 copying build/lib/dendropy/model/discrete.py -> build/bdist.linux-armv7l/wheel/dendropy/model 2024-05-22T14:04:36,079 copying build/lib/dendropy/model/parsimony.py -> build/bdist.linux-armv7l/wheel/dendropy/model 2024-05-22T14:04:36,081 copying build/lib/dendropy/model/birthdeath.py -> build/bdist.linux-armv7l/wheel/dendropy/model 2024-05-22T14:04:36,085 copying build/lib/dendropy/model/treeshape.py -> build/bdist.linux-armv7l/wheel/dendropy/model 2024-05-22T14:04:36,087 copying build/lib/dendropy/model/__init__.py -> build/bdist.linux-armv7l/wheel/dendropy/model 2024-05-22T14:04:36,089 copying build/lib/dendropy/model/coalescent.py -> build/bdist.linux-armv7l/wheel/dendropy/model 2024-05-22T14:04:36,092 copying build/lib/dendropy/model/reconcile.py -> build/bdist.linux-armv7l/wheel/dendropy/model 2024-05-22T14:04:36,095 creating build/bdist.linux-armv7l/wheel/dendropy/utility 2024-05-22T14:04:36,096 copying build/lib/dendropy/utility/metavar.py -> build/bdist.linux-armv7l/wheel/dendropy/utility 2024-05-22T14:04:36,098 copying build/lib/dendropy/utility/bibtex.py -> build/bdist.linux-armv7l/wheel/dendropy/utility 2024-05-22T14:04:36,100 copying build/lib/dendropy/utility/bitprocessing.py -> build/bdist.linux-armv7l/wheel/dendropy/utility 2024-05-22T14:04:36,102 copying build/lib/dendropy/utility/vcsinfo.py -> build/bdist.linux-armv7l/wheel/dendropy/utility 2024-05-22T14:04:36,105 copying build/lib/dendropy/utility/textprocessing.py -> build/bdist.linux-armv7l/wheel/dendropy/utility 2024-05-22T14:04:36,107 copying build/lib/dendropy/utility/constants.py -> build/bdist.linux-armv7l/wheel/dendropy/utility 2024-05-22T14:04:36,109 copying build/lib/dendropy/utility/container.py -> build/bdist.linux-armv7l/wheel/dendropy/utility 2024-05-22T14:04:36,112 copying build/lib/dendropy/utility/processio.py -> build/bdist.linux-armv7l/wheel/dendropy/utility 2024-05-22T14:04:36,115 copying build/lib/dendropy/utility/urlio.py -> build/bdist.linux-armv7l/wheel/dendropy/utility 2024-05-22T14:04:36,117 copying build/lib/dendropy/utility/timeprocessing.py -> build/bdist.linux-armv7l/wheel/dendropy/utility 2024-05-22T14:04:36,119 copying build/lib/dendropy/utility/deprecate.py -> build/bdist.linux-armv7l/wheel/dendropy/utility 2024-05-22T14:04:36,120 copying build/lib/dendropy/utility/terminal.py -> build/bdist.linux-armv7l/wheel/dendropy/utility 2024-05-22T14:04:36,122 copying build/lib/dendropy/utility/filesys.py -> build/bdist.linux-armv7l/wheel/dendropy/utility 2024-05-22T14:04:36,124 copying build/lib/dendropy/utility/cli.py -> build/bdist.linux-armv7l/wheel/dendropy/utility 2024-05-22T14:04:36,126 copying build/lib/dendropy/utility/error.py -> build/bdist.linux-armv7l/wheel/dendropy/utility 2024-05-22T14:04:36,128 copying build/lib/dendropy/utility/__init__.py -> build/bdist.linux-armv7l/wheel/dendropy/utility 2024-05-22T14:04:36,131 creating build/bdist.linux-armv7l/wheel/dendropy/utility/libexec 2024-05-22T14:04:36,131 copying build/lib/dendropy/utility/libexec/__init__.py -> build/bdist.linux-armv7l/wheel/dendropy/utility/libexec 2024-05-22T14:04:36,133 copying build/lib/dendropy/utility/messaging.py -> build/bdist.linux-armv7l/wheel/dendropy/utility 2024-05-22T14:04:36,136 copying build/lib/dendropy/utility/debug.py -> build/bdist.linux-armv7l/wheel/dendropy/utility 2024-05-22T14:04:36,138 creating build/bdist.linux-armv7l/wheel/dendropy/application 2024-05-22T14:04:36,139 copying build/lib/dendropy/application/dendropy_format.py -> build/bdist.linux-armv7l/wheel/dendropy/application 2024-05-22T14:04:36,141 copying build/lib/dendropy/application/sumlabels.py -> build/bdist.linux-armv7l/wheel/dendropy/application 2024-05-22T14:04:36,144 copying build/lib/dendropy/application/sumtrees.py -> build/bdist.linux-armv7l/wheel/dendropy/application 2024-05-22T14:04:36,148 copying build/lib/dendropy/application/__init__.py -> build/bdist.linux-armv7l/wheel/dendropy/application 2024-05-22T14:04:36,150 copying build/lib/dendropy/__main__.py -> build/bdist.linux-armv7l/wheel/dendropy 2024-05-22T14:04:36,152 creating build/bdist.linux-armv7l/wheel/dendropy/mathlib 2024-05-22T14:04:36,153 copying build/lib/dendropy/mathlib/probability.py -> build/bdist.linux-armv7l/wheel/dendropy/mathlib 2024-05-22T14:04:36,155 copying build/lib/dendropy/mathlib/mathfn.py -> build/bdist.linux-armv7l/wheel/dendropy/mathlib 2024-05-22T14:04:36,157 copying build/lib/dendropy/mathlib/statistics.py -> build/bdist.linux-armv7l/wheel/dendropy/mathlib 2024-05-22T14:04:36,159 copying build/lib/dendropy/mathlib/__init__.py -> build/bdist.linux-armv7l/wheel/dendropy/mathlib 2024-05-22T14:04:36,160 copying build/lib/dendropy/__init__.py -> build/bdist.linux-armv7l/wheel/dendropy 2024-05-22T14:04:36,163 creating build/bdist.linux-armv7l/wheel/dendropy/datamodel 2024-05-22T14:04:36,164 copying build/lib/dendropy/datamodel/charmatrixmodel.py -> build/bdist.linux-armv7l/wheel/dendropy/datamodel 2024-05-22T14:04:36,168 copying build/lib/dendropy/datamodel/taxonmodel.py -> build/bdist.linux-armv7l/wheel/dendropy/datamodel 2024-05-22T14:04:36,172 copying build/lib/dendropy/datamodel/charstatemodel.py -> build/bdist.linux-armv7l/wheel/dendropy/datamodel 2024-05-22T14:04:36,176 creating build/bdist.linux-armv7l/wheel/dendropy/datamodel/treemodel 2024-05-22T14:04:36,177 copying build/lib/dendropy/datamodel/treemodel/_edge.py -> build/bdist.linux-armv7l/wheel/dendropy/datamodel/treemodel 2024-05-22T14:04:36,179 copying build/lib/dendropy/datamodel/treemodel/_node.py -> build/bdist.linux-armv7l/wheel/dendropy/datamodel/treemodel 2024-05-22T14:04:36,183 copying build/lib/dendropy/datamodel/treemodel/_bipartition.py -> build/bdist.linux-armv7l/wheel/dendropy/datamodel/treemodel 2024-05-22T14:04:36,186 copying build/lib/dendropy/datamodel/treemodel/__init__.py -> build/bdist.linux-armv7l/wheel/dendropy/datamodel/treemodel 2024-05-22T14:04:36,188 copying build/lib/dendropy/datamodel/treemodel/_tree.py -> build/bdist.linux-armv7l/wheel/dendropy/datamodel/treemodel 2024-05-22T14:04:36,194 copying build/lib/dendropy/datamodel/treecollectionmodel.py -> build/bdist.linux-armv7l/wheel/dendropy/datamodel 2024-05-22T14:04:36,197 copying build/lib/dendropy/datamodel/datasetmodel.py -> build/bdist.linux-armv7l/wheel/dendropy/datamodel 2024-05-22T14:04:36,200 copying build/lib/dendropy/datamodel/__init__.py -> build/bdist.linux-armv7l/wheel/dendropy/datamodel 2024-05-22T14:04:36,202 copying build/lib/dendropy/datamodel/basemodel.py -> build/bdist.linux-armv7l/wheel/dendropy/datamodel 2024-05-22T14:04:36,206 creating build/bdist.linux-armv7l/wheel/dendropy/simulate 2024-05-22T14:04:36,207 copying build/lib/dendropy/simulate/charsim.py -> build/bdist.linux-armv7l/wheel/dendropy/simulate 2024-05-22T14:04:36,209 copying build/lib/dendropy/simulate/popgensim.py -> build/bdist.linux-armv7l/wheel/dendropy/simulate 2024-05-22T14:04:36,211 copying build/lib/dendropy/simulate/treesim.py -> build/bdist.linux-armv7l/wheel/dendropy/simulate 2024-05-22T14:04:36,213 copying build/lib/dendropy/simulate/__init__.py -> build/bdist.linux-armv7l/wheel/dendropy/simulate 2024-05-22T14:04:36,215 creating build/bdist.linux-armv7l/wheel/dendropy/interop 2024-05-22T14:04:36,216 copying build/lib/dendropy/interop/gbif.py -> build/bdist.linux-armv7l/wheel/dendropy/interop 2024-05-22T14:04:36,218 copying build/lib/dendropy/interop/itol.py -> build/bdist.linux-armv7l/wheel/dendropy/interop 2024-05-22T14:04:36,221 copying build/lib/dendropy/interop/genbank.py -> build/bdist.linux-armv7l/wheel/dendropy/interop 2024-05-22T14:04:36,225 copying build/lib/dendropy/interop/ape.py -> build/bdist.linux-armv7l/wheel/dendropy/interop 2024-05-22T14:04:36,228 copying build/lib/dendropy/interop/rspr.py -> build/bdist.linux-armv7l/wheel/dendropy/interop 2024-05-22T14:04:36,231 copying build/lib/dendropy/interop/biopython.py -> build/bdist.linux-armv7l/wheel/dendropy/interop 2024-05-22T14:04:36,234 copying build/lib/dendropy/interop/entrez.py -> build/bdist.linux-armv7l/wheel/dendropy/interop 2024-05-22T14:04:36,236 copying build/lib/dendropy/interop/muscle.py -> build/bdist.linux-armv7l/wheel/dendropy/interop 2024-05-22T14:04:36,239 copying build/lib/dendropy/interop/rstats.py -> build/bdist.linux-armv7l/wheel/dendropy/interop 2024-05-22T14:04:36,242 copying build/lib/dendropy/interop/__init__.py -> build/bdist.linux-armv7l/wheel/dendropy/interop 2024-05-22T14:04:36,245 copying build/lib/dendropy/interop/paup.py -> build/bdist.linux-armv7l/wheel/dendropy/interop 2024-05-22T14:04:36,248 copying build/lib/dendropy/interop/ete.py -> build/bdist.linux-armv7l/wheel/dendropy/interop 2024-05-22T14:04:36,251 copying build/lib/dendropy/interop/raxml.py -> build/bdist.linux-armv7l/wheel/dendropy/interop 2024-05-22T14:04:36,255 copying build/lib/dendropy/interop/seqgen.py -> build/bdist.linux-armv7l/wheel/dendropy/interop 2024-05-22T14:04:36,259 creating build/bdist.linux-armv7l/wheel/dendropy/legacy 2024-05-22T14:04:36,260 copying build/lib/dendropy/legacy/seqmodel.py -> build/bdist.linux-armv7l/wheel/dendropy/legacy 2024-05-22T14:04:36,263 copying build/lib/dendropy/legacy/continuous.py -> build/bdist.linux-armv7l/wheel/dendropy/legacy 2024-05-22T14:04:36,266 copying build/lib/dendropy/legacy/ncbi.py -> build/bdist.linux-armv7l/wheel/dendropy/legacy 2024-05-22T14:04:36,269 copying build/lib/dendropy/legacy/popgensim.py -> build/bdist.linux-armv7l/wheel/dendropy/legacy 2024-05-22T14:04:36,272 copying build/lib/dendropy/legacy/treesim.py -> build/bdist.linux-armv7l/wheel/dendropy/legacy 2024-05-22T14:04:36,275 copying build/lib/dendropy/legacy/popgenstat.py -> build/bdist.linux-armv7l/wheel/dendropy/legacy 2024-05-22T14:04:36,278 copying build/lib/dendropy/legacy/treecalc.py -> build/bdist.linux-armv7l/wheel/dendropy/legacy 2024-05-22T14:04:36,281 copying build/lib/dendropy/legacy/__init__.py -> build/bdist.linux-armv7l/wheel/dendropy/legacy 2024-05-22T14:04:36,284 copying build/lib/dendropy/legacy/coalescent.py -> build/bdist.linux-armv7l/wheel/dendropy/legacy 2024-05-22T14:04:36,287 copying build/lib/dendropy/legacy/reconcile.py -> build/bdist.linux-armv7l/wheel/dendropy/legacy 2024-05-22T14:04:36,290 copying build/lib/dendropy/legacy/treesplit.py -> build/bdist.linux-armv7l/wheel/dendropy/legacy 2024-05-22T14:04:36,293 copying build/lib/dendropy/legacy/treemanip.py -> build/bdist.linux-armv7l/wheel/dendropy/legacy 2024-05-22T14:04:36,296 copying build/lib/dendropy/legacy/seqsim.py -> build/bdist.linux-armv7l/wheel/dendropy/legacy 2024-05-22T14:04:36,298 copying build/lib/dendropy/legacy/treesum.py -> build/bdist.linux-armv7l/wheel/dendropy/legacy 2024-05-22T14:04:36,301 running install_egg_info 2024-05-22T14:04:36,338 Copying src/DendroPy.egg-info to build/bdist.linux-armv7l/wheel/DendroPy-5.0.0-py3.11.egg-info 2024-05-22T14:04:36,351 running install_scripts 2024-05-22T14:04:36,368 creating build/bdist.linux-armv7l/wheel/DendroPy-5.0.0.dist-info/WHEEL 2024-05-22T14:04:36,371 creating '/tmp/pip-wheel-at2pjoma/DendroPy-5.0.0-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2024-05-22T14:04:36,375 adding 'dendropy/__init__.py' 2024-05-22T14:04:36,377 adding 'dendropy/__main__.py' 2024-05-22T14:04:36,379 adding 'dendropy/application/__init__.py' 2024-05-22T14:04:36,381 adding 'dendropy/application/dendropy_format.py' 2024-05-22T14:04:36,383 adding 'dendropy/application/sumlabels.py' 2024-05-22T14:04:36,394 adding 'dendropy/application/sumtrees.py' 2024-05-22T14:04:36,397 adding 'dendropy/calculate/__init__.py' 2024-05-22T14:04:36,398 adding 'dendropy/calculate/combinatorics.py' 2024-05-22T14:04:36,400 adding 'dendropy/calculate/mathfn.py' 2024-05-22T14:04:36,406 adding 'dendropy/calculate/phylogeneticdistance.py' 2024-05-22T14:04:36,409 adding 'dendropy/calculate/popgenstat.py' 2024-05-22T14:04:36,411 adding 'dendropy/calculate/probability.py' 2024-05-22T14:04:36,414 adding 'dendropy/calculate/profiledistance.py' 2024-05-22T14:04:36,416 adding 'dendropy/calculate/statistics.py' 2024-05-22T14:04:36,420 adding 'dendropy/calculate/treecompare.py' 2024-05-22T14:04:36,423 adding 'dendropy/calculate/treemeasure.py' 2024-05-22T14:04:36,425 adding 'dendropy/calculate/treescore.py' 2024-05-22T14:04:36,427 adding 'dendropy/calculate/treesum.py' 2024-05-22T14:04:36,429 adding 'dendropy/dataio/__init__.py' 2024-05-22T14:04:36,431 adding 'dendropy/dataio/fastareader.py' 2024-05-22T14:04:36,433 adding 'dendropy/dataio/fastawriter.py' 2024-05-22T14:04:36,436 adding 'dendropy/dataio/ioservice.py' 2024-05-22T14:04:36,437 adding 'dendropy/dataio/multiphylipreader.py' 2024-05-22T14:04:36,438 adding 'dendropy/dataio/newick.py' 2024-05-22T14:04:36,442 adding 'dendropy/dataio/newickreader.py' 2024-05-22T14:04:36,445 adding 'dendropy/dataio/newickwriter.py' 2024-05-22T14:04:36,446 adding 'dendropy/dataio/newickyielder.py' 2024-05-22T14:04:36,451 adding 'dendropy/dataio/nexmlreader.py' 2024-05-22T14:04:36,454 adding 'dendropy/dataio/nexmlwriter.py' 2024-05-22T14:04:36,456 adding 'dendropy/dataio/nexmlyielder.py' 2024-05-22T14:04:36,458 adding 'dendropy/dataio/nexusprocessing.py' 2024-05-22T14:04:36,465 adding 'dendropy/dataio/nexusreader.py' 2024-05-22T14:04:36,468 adding 'dendropy/dataio/nexuswriter.py' 2024-05-22T14:04:36,470 adding 'dendropy/dataio/nexusyielder.py' 2024-05-22T14:04:36,472 adding 'dendropy/dataio/phylipreader.py' 2024-05-22T14:04:36,474 adding 'dendropy/dataio/phylipwriter.py' 2024-05-22T14:04:36,475 adding 'dendropy/dataio/tokenizer.py' 2024-05-22T14:04:36,477 adding 'dendropy/dataio/xmlprocessing.py' 2024-05-22T14:04:36,479 adding 'dendropy/datamodel/__init__.py' 2024-05-22T14:04:36,485 adding 'dendropy/datamodel/basemodel.py' 2024-05-22T14:04:36,494 adding 'dendropy/datamodel/charmatrixmodel.py' 2024-05-22T14:04:36,499 adding 'dendropy/datamodel/charstatemodel.py' 2024-05-22T14:04:36,503 adding 'dendropy/datamodel/datasetmodel.py' 2024-05-22T14:04:36,511 adding 'dendropy/datamodel/taxonmodel.py' 2024-05-22T14:04:36,524 adding 'dendropy/datamodel/treecollectionmodel.py' 2024-05-22T14:04:36,527 adding 'dendropy/datamodel/treemodel/__init__.py' 2024-05-22T14:04:36,530 adding 'dendropy/datamodel/treemodel/_bipartition.py' 2024-05-22T14:04:36,532 adding 'dendropy/datamodel/treemodel/_edge.py' 2024-05-22T14:04:36,538 adding 'dendropy/datamodel/treemodel/_node.py' 2024-05-22T14:04:36,557 adding 'dendropy/datamodel/treemodel/_tree.py' 2024-05-22T14:04:36,560 adding 'dendropy/interop/__init__.py' 2024-05-22T14:04:36,561 adding 'dendropy/interop/ape.py' 2024-05-22T14:04:36,563 adding 'dendropy/interop/biopython.py' 2024-05-22T14:04:36,564 adding 'dendropy/interop/entrez.py' 2024-05-22T14:04:36,565 adding 'dendropy/interop/ete.py' 2024-05-22T14:04:36,567 adding 'dendropy/interop/gbif.py' 2024-05-22T14:04:36,570 adding 'dendropy/interop/genbank.py' 2024-05-22T14:04:36,573 adding 'dendropy/interop/itol.py' 2024-05-22T14:04:36,574 adding 'dendropy/interop/muscle.py' 2024-05-22T14:04:36,578 adding 'dendropy/interop/paup.py' 2024-05-22T14:04:36,582 adding 'dendropy/interop/raxml.py' 2024-05-22T14:04:36,584 adding 'dendropy/interop/rspr.py' 2024-05-22T14:04:36,585 adding 'dendropy/interop/rstats.py' 2024-05-22T14:04:36,588 adding 'dendropy/interop/seqgen.py' 2024-05-22T14:04:36,589 adding 'dendropy/legacy/__init__.py' 2024-05-22T14:04:36,591 adding 'dendropy/legacy/coalescent.py' 2024-05-22T14:04:36,592 adding 'dendropy/legacy/continuous.py' 2024-05-22T14:04:36,594 adding 'dendropy/legacy/ncbi.py' 2024-05-22T14:04:36,595 adding 'dendropy/legacy/popgensim.py' 2024-05-22T14:04:36,596 adding 'dendropy/legacy/popgenstat.py' 2024-05-22T14:04:36,597 adding 'dendropy/legacy/reconcile.py' 2024-05-22T14:04:36,599 adding 'dendropy/legacy/seqmodel.py' 2024-05-22T14:04:36,600 adding 'dendropy/legacy/seqsim.py' 2024-05-22T14:04:36,601 adding 'dendropy/legacy/treecalc.py' 2024-05-22T14:04:36,603 adding 'dendropy/legacy/treemanip.py' 2024-05-22T14:04:36,604 adding 'dendropy/legacy/treesim.py' 2024-05-22T14:04:36,606 adding 'dendropy/legacy/treesplit.py' 2024-05-22T14:04:36,607 adding 'dendropy/legacy/treesum.py' 2024-05-22T14:04:36,609 adding 'dendropy/mathlib/__init__.py' 2024-05-22T14:04:36,610 adding 'dendropy/mathlib/mathfn.py' 2024-05-22T14:04:36,611 adding 'dendropy/mathlib/probability.py' 2024-05-22T14:04:36,612 adding 'dendropy/mathlib/statistics.py' 2024-05-22T14:04:36,614 adding 'dendropy/model/__init__.py' 2024-05-22T14:04:36,621 adding 'dendropy/model/birthdeath.py' 2024-05-22T14:04:36,626 adding 'dendropy/model/coalescent.py' 2024-05-22T14:04:36,629 adding 'dendropy/model/continuous.py' 2024-05-22T14:04:36,632 adding 'dendropy/model/discrete.py' 2024-05-22T14:04:36,634 adding 'dendropy/model/multispeciescoalescent.py' 2024-05-22T14:04:36,637 adding 'dendropy/model/parsimony.py' 2024-05-22T14:04:36,641 adding 'dendropy/model/protractedspeciation.py' 2024-05-22T14:04:36,645 adding 'dendropy/model/reconcile.py' 2024-05-22T14:04:36,646 adding 'dendropy/model/treeshape.py' 2024-05-22T14:04:36,648 adding 'dendropy/simulate/__init__.py' 2024-05-22T14:04:36,649 adding 'dendropy/simulate/charsim.py' 2024-05-22T14:04:36,651 adding 'dendropy/simulate/popgensim.py' 2024-05-22T14:04:36,652 adding 'dendropy/simulate/treesim.py' 2024-05-22T14:04:36,654 adding 'dendropy/utility/__init__.py' 2024-05-22T14:04:36,656 adding 'dendropy/utility/bibtex.py' 2024-05-22T14:04:36,658 adding 'dendropy/utility/bitprocessing.py' 2024-05-22T14:04:36,659 adding 'dendropy/utility/cli.py' 2024-05-22T14:04:36,660 adding 'dendropy/utility/constants.py' 2024-05-22T14:04:36,665 adding 'dendropy/utility/container.py' 2024-05-22T14:04:36,667 adding 'dendropy/utility/debug.py' 2024-05-22T14:04:36,668 adding 'dendropy/utility/deprecate.py' 2024-05-22T14:04:36,670 adding 'dendropy/utility/error.py' 2024-05-22T14:04:36,672 adding 'dendropy/utility/filesys.py' 2024-05-22T14:04:36,673 adding 'dendropy/utility/messaging.py' 2024-05-22T14:04:36,675 adding 'dendropy/utility/metavar.py' 2024-05-22T14:04:36,676 adding 'dendropy/utility/processio.py' 2024-05-22T14:04:36,678 adding 'dendropy/utility/terminal.py' 2024-05-22T14:04:36,680 adding 'dendropy/utility/textprocessing.py' 2024-05-22T14:04:36,681 adding 'dendropy/utility/timeprocessing.py' 2024-05-22T14:04:36,682 adding 'dendropy/utility/urlio.py' 2024-05-22T14:04:36,684 adding 'dendropy/utility/vcsinfo.py' 2024-05-22T14:04:36,686 adding 'dendropy/utility/libexec/__init__.py' 2024-05-22T14:04:36,687 adding 'DendroPy-5.0.0.dist-info/AUTHORS.rst' 2024-05-22T14:04:36,688 adding 'DendroPy-5.0.0.dist-info/LICENSE.rst' 2024-05-22T14:04:36,689 adding 'DendroPy-5.0.0.dist-info/METADATA' 2024-05-22T14:04:36,690 adding 'DendroPy-5.0.0.dist-info/WHEEL' 2024-05-22T14:04:36,691 adding 'DendroPy-5.0.0.dist-info/entry_points.txt' 2024-05-22T14:04:36,692 adding 'DendroPy-5.0.0.dist-info/top_level.txt' 2024-05-22T14:04:36,693 adding 'DendroPy-5.0.0.dist-info/zip-safe' 2024-05-22T14:04:36,695 adding 'DendroPy-5.0.0.dist-info/RECORD' 2024-05-22T14:04:36,710 removing build/bdist.linux-armv7l/wheel 2024-05-22T14:04:36,871 Building wheel for dendropy (setup.py): finished with status 'done' 2024-05-22T14:04:36,878 Created wheel for dendropy: filename=DendroPy-5.0.0-py3-none-any.whl size=458994 sha256=d3381f9f3c02ccdad2b42fbd4369ebe09d758a25f867ba03db96bebcb8639d7c 2024-05-22T14:04:36,879 Stored in directory: /tmp/pip-ephem-wheel-cache-sgoexw9t/wheels/a8/c0/c2/3ee9f08fe44564daf281a2b358b435983764bbe68dbace7e2b 2024-05-22T14:04:36,894 Successfully built dendropy 2024-05-22T14:04:36,918 Removed build tracker: '/tmp/pip-build-tracker-4hll5545'