2024-05-22T15:14:37,408 Created temporary directory: /tmp/pip-build-tracker-0gwdxcz8 2024-05-22T15:14:37,409 Initialized build tracking at /tmp/pip-build-tracker-0gwdxcz8 2024-05-22T15:14:37,409 Created build tracker: /tmp/pip-build-tracker-0gwdxcz8 2024-05-22T15:14:37,410 Entered build tracker: /tmp/pip-build-tracker-0gwdxcz8 2024-05-22T15:14:37,410 Created temporary directory: /tmp/pip-wheel-5b0jbdan 2024-05-22T15:14:37,414 Created temporary directory: /tmp/pip-ephem-wheel-cache-4m4f6_z3 2024-05-22T15:14:37,437 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2024-05-22T15:14:37,440 2 location(s) to search for versions of biomero: 2024-05-22T15:14:37,440 * https://pypi.org/simple/biomero/ 2024-05-22T15:14:37,440 * https://www.piwheels.org/simple/biomero/ 2024-05-22T15:14:37,441 Fetching project page and analyzing links: https://pypi.org/simple/biomero/ 2024-05-22T15:14:37,442 Getting page https://pypi.org/simple/biomero/ 2024-05-22T15:14:37,443 Found index url https://pypi.org/simple/ 2024-05-22T15:14:37,653 Fetched page https://pypi.org/simple/biomero/ as application/vnd.pypi.simple.v1+json 2024-05-22T15:14:37,658 Skipping link: No binaries permitted for biomero: https://files.pythonhosted.org/packages/62/48/c77a7d502ed23e824988527ffe744d77ec3692bf373f5dffb6406149f55e/biomero-1.2.0-py3-none-any.whl (from https://pypi.org/simple/biomero/) (requires-python:>=3.7) 2024-05-22T15:14:37,659 Found link https://files.pythonhosted.org/packages/37/4b/4934e30b8ac7f859e20ce2f33ebb9d9de0c2611fd419587e840b457da994/biomero-1.2.0.tar.gz (from https://pypi.org/simple/biomero/) (requires-python:>=3.7), version: 1.2.0 2024-05-22T15:14:37,660 Skipping link: No binaries permitted for biomero: https://files.pythonhosted.org/packages/ba/59/df01007bae6d10f7a894eb8f067b19a6fc1c85cef3621532c552c8a5d83c/biomero-1.3.0-py3-none-any.whl (from https://pypi.org/simple/biomero/) (requires-python:>=3.7) 2024-05-22T15:14:37,661 Found link https://files.pythonhosted.org/packages/93/66/6f3ba130c6ab15b10a0fc92683db7f8a6d0a60df0c00311f3011d8801db2/biomero-1.3.0.tar.gz (from https://pypi.org/simple/biomero/) (requires-python:>=3.7), version: 1.3.0 2024-05-22T15:14:37,662 Skipping link: No binaries permitted for biomero: https://files.pythonhosted.org/packages/97/35/d6b2ca0b76deaab237094daa9fb4b6c86df67ef59f07510c101082235d8d/biomero-1.4.0-py3-none-any.whl (from https://pypi.org/simple/biomero/) (requires-python:>=3.7) 2024-05-22T15:14:37,663 Found link https://files.pythonhosted.org/packages/72/2d/612e4f8aedcfd6a0aca21b7896a9ca74e18fdbc382538f411fbe4e403fe4/biomero-1.4.0.tar.gz (from https://pypi.org/simple/biomero/) (requires-python:>=3.7), version: 1.4.0 2024-05-22T15:14:37,663 Skipping link: No binaries permitted for biomero: https://files.pythonhosted.org/packages/f2/2a/58f8f3897d6bfffb13375cb3f67dc4776773852b6cb89c00b45317a93854/biomero-1.5.0-py3-none-any.whl (from https://pypi.org/simple/biomero/) (requires-python:>=3.7) 2024-05-22T15:14:37,664 Found link https://files.pythonhosted.org/packages/22/5d/beb526e718ea20582a7a10ef277d10f2907723f2dd0bf57465a8f406f27e/biomero-1.5.0.tar.gz (from https://pypi.org/simple/biomero/) (requires-python:>=3.7), version: 1.5.0 2024-05-22T15:14:37,665 Skipping link: No binaries permitted for biomero: https://files.pythonhosted.org/packages/03/8f/4f9506b39fa51bf565e2354dc887ec53ede58150a86a18b92f6bfd8c72a8/biomero-1.5.1-py3-none-any.whl (from https://pypi.org/simple/biomero/) (requires-python:>=3.7) 2024-05-22T15:14:37,666 Found link https://files.pythonhosted.org/packages/98/96/a628cef6b3ed1f89ab3bca30285b46e477bb01bd7fdf6a63e68a0f85c769/biomero-1.5.1.tar.gz (from https://pypi.org/simple/biomero/) (requires-python:>=3.7), version: 1.5.1 2024-05-22T15:14:37,667 Skipping link: No binaries permitted for biomero: https://files.pythonhosted.org/packages/ab/be/922b8b35d2c4a9c317c1095c71c1bcc74443be8f04b2a6ac85cbc2892a78/biomero-1.6.0-py3-none-any.whl (from https://pypi.org/simple/biomero/) (requires-python:>=3.7) 2024-05-22T15:14:37,668 Found link https://files.pythonhosted.org/packages/7c/dc/65d7e481ab81cb06ce680bbe77a95f336261381813135dbc6aa0f0cdb1e3/biomero-1.6.0.tar.gz (from https://pypi.org/simple/biomero/) (requires-python:>=3.7), version: 1.6.0 2024-05-22T15:14:37,669 Skipping link: No binaries permitted for biomero: https://files.pythonhosted.org/packages/93/eb/9d2f80d33477bd9d6299ad0b29898a77c18e449e9bfa6c3656562a3f69b9/biomero-1.7.0-py3-none-any.whl (from https://pypi.org/simple/biomero/) (requires-python:>=3.7) 2024-05-22T15:14:37,670 Found link https://files.pythonhosted.org/packages/e1/9e/104955b6bb3f34d32fde7b9d1f4be5d5f46a45b25afbee449ac44c905a72/biomero-1.7.0.tar.gz (from https://pypi.org/simple/biomero/) (requires-python:>=3.7), version: 1.7.0 2024-05-22T15:14:37,670 Skipping link: No binaries permitted for biomero: https://files.pythonhosted.org/packages/39/f4/ca212a8abbb68d2c32d48cab43cf6fe1622a5317a4e4300154dafe9b9862/biomero-1.7.1-py3-none-any.whl (from https://pypi.org/simple/biomero/) (requires-python:>=3.7) 2024-05-22T15:14:37,671 Found link https://files.pythonhosted.org/packages/b5/28/c5ae875aa13bd7c8c9aec910812c2fd816fffd196d65f63b8a142181fd33/biomero-1.7.1.tar.gz (from https://pypi.org/simple/biomero/) (requires-python:>=3.7), version: 1.7.1 2024-05-22T15:14:37,672 Skipping link: No binaries permitted for biomero: https://files.pythonhosted.org/packages/21/d9/c167814a1abc31271e77ad77422f04554cd41b18f62572e12c4f57e0d446/biomero-1.8.0-py3-none-any.whl (from https://pypi.org/simple/biomero/) (requires-python:>=3.7) 2024-05-22T15:14:37,673 Found link https://files.pythonhosted.org/packages/c4/f3/5e41f475114acc86b9c5fc20fe702136efe2cfd9a93d877db1b6dd619297/biomero-1.8.0.tar.gz (from https://pypi.org/simple/biomero/) (requires-python:>=3.7), version: 1.8.0 2024-05-22T15:14:37,673 Skipping link: No binaries permitted for biomero: https://files.pythonhosted.org/packages/2b/97/0854245dad0152c2df83582e7802735b6c46e4ee97aaefa0252ee23af76c/biomero-1.9.0-py3-none-any.whl (from https://pypi.org/simple/biomero/) (requires-python:>=3.7) 2024-05-22T15:14:37,674 Found link https://files.pythonhosted.org/packages/22/4f/1ad8dbbd2c2c569ce42ef22e424c10267f8af17ef0179fecc18dfaceb367/biomero-1.9.0.tar.gz (from https://pypi.org/simple/biomero/) (requires-python:>=3.7), version: 1.9.0 2024-05-22T15:14:37,675 Skipping link: No binaries permitted for biomero: https://files.pythonhosted.org/packages/38/23/7a5ce5588c26a7a8fd6da2a6dfd96b002cae0d52648df25c5e4526e0b84c/biomero-1.9.1-py3-none-any.whl (from https://pypi.org/simple/biomero/) (requires-python:>=3.7) 2024-05-22T15:14:37,676 Found link https://files.pythonhosted.org/packages/6d/6b/d8bec19f77accd9ea2a90b990bd0aceba02de375751a8acc5a690a1d816a/biomero-1.9.1.tar.gz (from https://pypi.org/simple/biomero/) (requires-python:>=3.7), version: 1.9.1 2024-05-22T15:14:37,676 Skipping link: No binaries permitted for biomero: https://files.pythonhosted.org/packages/5b/7f/35fdc1e2d4e84550a0cccaa9cac65a36da0b51857726558507f440a10a72/biomero-1.10.0-py3-none-any.whl (from https://pypi.org/simple/biomero/) (requires-python:>=3.7) 2024-05-22T15:14:37,677 Found link https://files.pythonhosted.org/packages/61/63/84b5affaf188280568084e9ed7f78f2c30920331bc31990353140689292b/biomero-1.10.0.tar.gz (from https://pypi.org/simple/biomero/) (requires-python:>=3.7), version: 1.10.0 2024-05-22T15:14:37,678 Fetching project page and analyzing links: https://www.piwheels.org/simple/biomero/ 2024-05-22T15:14:37,679 Getting page https://www.piwheels.org/simple/biomero/ 2024-05-22T15:14:37,680 Found index url https://www.piwheels.org/simple/ 2024-05-22T15:14:37,887 Fetched page https://www.piwheels.org/simple/biomero/ as text/html 2024-05-22T15:14:37,892 Skipping link: No binaries permitted for biomero: https://www.piwheels.org/simple/biomero/biomero-1.9.0-py3-none-any.whl#sha256=d7b46dbddbc02213c8058fff735666ca242165070470776408d141210b02cc6b (from https://www.piwheels.org/simple/biomero/) (requires-python:>=3.7) 2024-05-22T15:14:37,893 Skipping link: No binaries permitted for biomero: https://www.piwheels.org/simple/biomero/biomero-1.8.0-py3-none-any.whl#sha256=823968c9fd9c97aa196bb2d2b94d85245d2163842ba800ea938a1fdeb7be8b74 (from https://www.piwheels.org/simple/biomero/) (requires-python:>=3.7) 2024-05-22T15:14:37,893 Skipping link: No binaries permitted for biomero: https://www.piwheels.org/simple/biomero/biomero-1.7.1-py3-none-any.whl#sha256=d2aec9750cfab56583a01cbd08b734569956b5d4a5a0c524e6b57bc8d76338b4 (from https://www.piwheels.org/simple/biomero/) (requires-python:>=3.7) 2024-05-22T15:14:37,894 Skipping link: No binaries permitted for biomero: https://www.piwheels.org/simple/biomero/biomero-1.7.0-py3-none-any.whl#sha256=df715c10bf0a3fe33bd73a44c98bf4b4b75bf0c70d3deb65f4dda3d3813b85e1 (from https://www.piwheels.org/simple/biomero/) (requires-python:>=3.7) 2024-05-22T15:14:37,895 Skipping link: No binaries permitted for biomero: https://www.piwheels.org/simple/biomero/biomero-1.6.0-py3-none-any.whl#sha256=f881953b98a86ee2c1508c007dec8ba9b09f98951d65e81405903f1b4efc8515 (from https://www.piwheels.org/simple/biomero/) (requires-python:>=3.7) 2024-05-22T15:14:37,895 Skipping link: No binaries permitted for biomero: https://www.piwheels.org/simple/biomero/biomero-1.5.1-py3-none-any.whl#sha256=419f808c9c52525df6108fbd48d53e82cc965e9857500c4544041a791dd4d65e (from https://www.piwheels.org/simple/biomero/) (requires-python:>=3.7) 2024-05-22T15:14:37,895 Skipping link: No binaries permitted for biomero: https://www.piwheels.org/simple/biomero/biomero-1.5.0-py3-none-any.whl#sha256=da32037e690913b648bc08b4cf95219e51618920116abdb024914dc4b29393fd (from https://www.piwheels.org/simple/biomero/) (requires-python:>=3.7) 2024-05-22T15:14:37,896 Skipping link: No binaries permitted for biomero: https://www.piwheels.org/simple/biomero/biomero-1.4.0-py3-none-any.whl#sha256=06a09b9974b9782c3d527bf0ab8d67349261b9af71c6aa3ebf12f342eddd9286 (from https://www.piwheels.org/simple/biomero/) (requires-python:>=3.7) 2024-05-22T15:14:37,896 Skipping link: No binaries permitted for biomero: https://www.piwheels.org/simple/biomero/biomero-1.3.0-py3-none-any.whl#sha256=e87fb4e5b3565cfa3b27830d8d1d1bff5c1054bfb032d2e6055e966ef84df39d (from https://www.piwheels.org/simple/biomero/) (requires-python:>=3.7) 2024-05-22T15:14:37,897 Skipping link: No binaries permitted for biomero: https://www.piwheels.org/simple/biomero/biomero-1.2.0-py3-none-any.whl#sha256=0a3d446aaed8e43c191ec7b78fd1731e91935fd1e432bde72a96689be19f8dbf (from https://www.piwheels.org/simple/biomero/) (requires-python:>=3.7) 2024-05-22T15:14:37,898 Skipping link: not a file: https://www.piwheels.org/simple/biomero/ 2024-05-22T15:14:37,898 Skipping link: not a file: https://pypi.org/simple/biomero/ 2024-05-22T15:14:37,918 Given no hashes to check 1 links for project 'biomero': discarding no candidates 2024-05-22T15:14:37,940 Collecting biomero==1.9.1 2024-05-22T15:14:37,942 Created temporary directory: /tmp/pip-unpack-qx5weplp 2024-05-22T15:14:38,407 Downloading biomero-1.9.1.tar.gz (1.1 MB) 2024-05-22T15:14:38,734 Added biomero==1.9.1 from https://files.pythonhosted.org/packages/6d/6b/d8bec19f77accd9ea2a90b990bd0aceba02de375751a8acc5a690a1d816a/biomero-1.9.1.tar.gz to build tracker '/tmp/pip-build-tracker-0gwdxcz8' 2024-05-22T15:14:38,741 Created temporary directory: /tmp/pip-build-env-qh38j824 2024-05-22T15:14:38,745 Installing build dependencies: started 2024-05-22T15:14:38,746 Running command pip subprocess to install build dependencies 2024-05-22T15:14:39,936 Using pip 24.0 from /usr/local/lib/python3.11/dist-packages/pip (python 3.11) 2024-05-22T15:14:40,450 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2024-05-22T15:14:41,958 Collecting setuptools>=45 2024-05-22T15:14:41,975 Using cached https://www.piwheels.org/simple/setuptools/setuptools-70.0.0-py3-none-any.whl (863 kB) 2024-05-22T15:14:42,287 Collecting setuptools_scm>=6.2 (from setuptools_scm[toml]>=6.2) 2024-05-22T15:14:42,301 Using cached https://www.piwheels.org/simple/setuptools-scm/setuptools_scm-8.1.0-py3-none-any.whl (43 kB) 2024-05-22T15:14:42,624 Collecting packaging>=20 (from setuptools_scm>=6.2->setuptools_scm[toml]>=6.2) 2024-05-22T15:14:42,639 Using cached https://www.piwheels.org/simple/packaging/packaging-24.0-py3-none-any.whl (53 kB) 2024-05-22T15:14:45,168 Installing collected packages: setuptools, packaging, setuptools_scm 2024-05-22T15:14:48,044 Successfully installed packaging-24.0 setuptools-70.0.0 setuptools_scm-8.1.0 2024-05-22T15:14:48,550 Installing build dependencies: finished with status 'done' 2024-05-22T15:14:48,554 Getting requirements to build wheel: started 2024-05-22T15:14:48,555 Running command Getting requirements to build wheel 2024-05-22T15:14:49,401 running egg_info 2024-05-22T15:14:49,406 writing biomero.egg-info/PKG-INFO 2024-05-22T15:14:49,411 writing dependency_links to biomero.egg-info/dependency_links.txt 2024-05-22T15:14:49,414 writing requirements to biomero.egg-info/requires.txt 2024-05-22T15:14:49,415 writing top-level names to biomero.egg-info/top_level.txt 2024-05-22T15:14:49,456 ERROR setuptools_scm._file_finders.git listing git files failed - pretending there aren't any 2024-05-22T15:14:49,460 reading manifest file 'biomero.egg-info/SOURCES.txt' 2024-05-22T15:14:49,463 reading manifest template 'MANIFEST.in' 2024-05-22T15:14:49,472 adding license file 'LICENSE' 2024-05-22T15:14:49,475 writing manifest file 'biomero.egg-info/SOURCES.txt' 2024-05-22T15:14:49,596 Getting requirements to build wheel: finished with status 'done' 2024-05-22T15:14:49,606 Installing backend dependencies: started 2024-05-22T15:14:49,607 Running command pip subprocess to install backend dependencies 2024-05-22T15:14:50,743 Using pip 24.0 from /usr/local/lib/python3.11/dist-packages/pip (python 3.11) 2024-05-22T15:14:51,248 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2024-05-22T15:14:51,803 Collecting wheel 2024-05-22T15:14:51,821 Using cached https://www.piwheels.org/simple/wheel/wheel-0.43.0-py3-none-any.whl (65 kB) 2024-05-22T15:14:54,319 Installing collected packages: wheel 2024-05-22T15:14:54,550 Creating /tmp/pip-build-env-qh38j824/normal/local/bin 2024-05-22T15:14:54,553 changing mode of /tmp/pip-build-env-qh38j824/normal/local/bin/wheel to 755 2024-05-22T15:14:54,564 Successfully installed wheel-0.43.0 2024-05-22T15:14:55,044 Installing backend dependencies: finished with status 'done' 2024-05-22T15:14:55,045 Created temporary directory: /tmp/pip-modern-metadata-lpid8sud 2024-05-22T15:14:55,048 Preparing metadata (pyproject.toml): started 2024-05-22T15:14:55,049 Running command Preparing metadata (pyproject.toml) 2024-05-22T15:14:55,940 running dist_info 2024-05-22T15:14:55,946 creating /tmp/pip-modern-metadata-lpid8sud/biomero.egg-info 2024-05-22T15:14:55,951 writing /tmp/pip-modern-metadata-lpid8sud/biomero.egg-info/PKG-INFO 2024-05-22T15:14:55,960 writing dependency_links to /tmp/pip-modern-metadata-lpid8sud/biomero.egg-info/dependency_links.txt 2024-05-22T15:14:55,963 writing requirements to /tmp/pip-modern-metadata-lpid8sud/biomero.egg-info/requires.txt 2024-05-22T15:14:55,964 writing top-level names to /tmp/pip-modern-metadata-lpid8sud/biomero.egg-info/top_level.txt 2024-05-22T15:14:55,966 writing manifest file '/tmp/pip-modern-metadata-lpid8sud/biomero.egg-info/SOURCES.txt' 2024-05-22T15:14:56,011 ERROR setuptools_scm._file_finders.git listing git files failed - pretending there aren't any 2024-05-22T15:14:56,014 reading manifest file '/tmp/pip-modern-metadata-lpid8sud/biomero.egg-info/SOURCES.txt' 2024-05-22T15:14:56,017 reading manifest template 'MANIFEST.in' 2024-05-22T15:14:56,026 adding license file 'LICENSE' 2024-05-22T15:14:56,028 writing manifest file '/tmp/pip-modern-metadata-lpid8sud/biomero.egg-info/SOURCES.txt' 2024-05-22T15:14:56,030 creating '/tmp/pip-modern-metadata-lpid8sud/biomero-1.9.1.dist-info' 2024-05-22T15:14:56,200 Preparing metadata (pyproject.toml): finished with status 'done' 2024-05-22T15:14:56,209 Source in /tmp/pip-wheel-5b0jbdan/biomero_65cdea61da7c48e2a8d3f0137cf9d747 has version 1.9.1, which satisfies requirement biomero==1.9.1 from https://files.pythonhosted.org/packages/6d/6b/d8bec19f77accd9ea2a90b990bd0aceba02de375751a8acc5a690a1d816a/biomero-1.9.1.tar.gz 2024-05-22T15:14:56,210 Removed biomero==1.9.1 from https://files.pythonhosted.org/packages/6d/6b/d8bec19f77accd9ea2a90b990bd0aceba02de375751a8acc5a690a1d816a/biomero-1.9.1.tar.gz from build tracker '/tmp/pip-build-tracker-0gwdxcz8' 2024-05-22T15:14:56,222 Created temporary directory: /tmp/pip-unpack-yn0lv0vd 2024-05-22T15:14:56,223 Created temporary directory: /tmp/pip-unpack-pc0spd2q 2024-05-22T15:14:56,244 Building wheels for collected packages: biomero 2024-05-22T15:14:56,248 Created temporary directory: /tmp/pip-wheel-uijepnlc 2024-05-22T15:14:56,248 Destination directory: /tmp/pip-wheel-uijepnlc 2024-05-22T15:14:56,250 Building wheel for biomero (pyproject.toml): started 2024-05-22T15:14:56,252 Running command Building wheel for biomero (pyproject.toml) 2024-05-22T15:14:57,081 running bdist_wheel 2024-05-22T15:14:57,103 running build 2024-05-22T15:14:57,104 running build_py 2024-05-22T15:14:57,109 creating build 2024-05-22T15:14:57,110 creating build/lib 2024-05-22T15:14:57,111 creating build/lib/biomero 2024-05-22T15:14:57,112 copying biomero/constants.py -> build/lib/biomero 2024-05-22T15:14:57,114 copying biomero/slurm_client.py -> build/lib/biomero 2024-05-22T15:14:57,118 copying biomero/__init__.py -> build/lib/biomero 2024-05-22T15:14:57,120 creating build/lib/resources 2024-05-22T15:14:57,121 copying resources/convert_zarr_to_tiff.py -> build/lib/resources 2024-05-22T15:14:57,123 copying resources/__init__.py -> build/lib/resources 2024-05-22T15:14:57,126 creating build/lib/docs 2024-05-22T15:14:57,127 copying docs/conf.py -> build/lib/docs 2024-05-22T15:14:57,130 creating build/lib/tests 2024-05-22T15:14:57,131 creating build/lib/tests/integration 2024-05-22T15:14:57,132 copying tests/integration/__init__.py -> build/lib/tests/integration 2024-05-22T15:14:57,134 creating build/lib/tests/unit 2024-05-22T15:14:57,135 copying tests/unit/test_slurm_client.py -> build/lib/tests/unit 2024-05-22T15:14:57,139 copying tests/unit/__init__.py -> build/lib/tests/unit 2024-05-22T15:14:57,141 running egg_info 2024-05-22T15:14:57,148 writing biomero.egg-info/PKG-INFO 2024-05-22T15:14:57,153 writing dependency_links to biomero.egg-info/dependency_links.txt 2024-05-22T15:14:57,155 writing requirements to biomero.egg-info/requires.txt 2024-05-22T15:14:57,157 writing top-level names to biomero.egg-info/top_level.txt 2024-05-22T15:14:57,187 ERROR setuptools_scm._file_finders.git listing git files failed - pretending there aren't any 2024-05-22T15:14:57,191 reading manifest file 'biomero.egg-info/SOURCES.txt' 2024-05-22T15:14:57,195 reading manifest template 'MANIFEST.in' 2024-05-22T15:14:57,214 adding license file 'LICENSE' 2024-05-22T15:14:57,218 writing manifest file 'biomero.egg-info/SOURCES.txt' 2024-05-22T15:14:57,225 copying resources/convert_job_array.sh -> build/lib/resources 2024-05-22T15:14:57,227 copying resources/convert_zarr_to_tiff.def -> build/lib/resources 2024-05-22T15:14:57,230 copying resources/example.config -> build/lib/resources 2024-05-22T15:14:57,232 copying resources/job_template.sh -> build/lib/resources 2024-05-22T15:14:57,235 copying resources/pull_images.sh -> build/lib/resources 2024-05-22T15:14:57,237 copying resources/slurm-config.ini -> build/lib/resources 2024-05-22T15:14:57,240 copying docs/Makefile -> build/lib/docs 2024-05-22T15:14:57,242 copying docs/biomero.rst -> build/lib/docs 2024-05-22T15:14:57,245 copying docs/index.rst -> build/lib/docs 2024-05-22T15:14:57,247 copying docs/make.bat -> build/lib/docs 2024-05-22T15:14:57,250 copying docs/modules.rst -> build/lib/docs 2024-05-22T15:14:57,252 copying docs/readme_link.md -> build/lib/docs 2024-05-22T15:14:57,254 copying docs/requirements.txt -> build/lib/docs 2024-05-22T15:14:57,257 copying docs/tutorial_link.md -> build/lib/docs 2024-05-22T15:14:57,259 creating build/lib/resources/tutorials 2024-05-22T15:14:57,261 copying resources/tutorials/tutorial_Azure_slurm.md -> build/lib/resources/tutorials 2024-05-22T15:14:57,264 copying resources/tutorials/tutorial_GoogleCloud_slurm.md -> build/lib/resources/tutorials 2024-05-22T15:14:57,267 copying resources/tutorials/tutorial_cellexpansion.md -> build/lib/resources/tutorials 2024-05-22T15:14:57,270 copying resources/tutorials/tutorial_cellprofiler.md -> build/lib/resources/tutorials 2024-05-22T15:14:57,273 copying resources/tutorials/tutorial_local_slurm.md -> build/lib/resources/tutorials 2024-05-22T15:14:57,277 creating build/lib/resources/tutorials/images 2024-05-22T15:14:57,278 copying resources/tutorials/images/Cells.tif -> build/lib/resources/tutorials/images 2024-05-22T15:14:57,294 copying resources/tutorials/images/cellexpansion.png -> build/lib/resources/tutorials/images 2024-05-22T15:14:57,302 copying resources/tutorials/images/gc_allow_ssh.PNG -> build/lib/resources/tutorials/images 2024-05-22T15:14:57,306 copying resources/tutorials/images/nuclei_labels.png -> build/lib/resources/tutorials/images 2024-05-22T15:14:57,311 copying resources/tutorials/images/webclient_init_env.PNG -> build/lib/resources/tutorials/images 2024-05-22T15:14:57,314 copying resources/tutorials/images/webclient_init_env_done.PNG -> build/lib/resources/tutorials/images 2024-05-22T15:14:57,316 copying resources/tutorials/images/webclient_run_cellpose.PNG -> build/lib/resources/tutorials/images 2024-05-22T15:14:57,319 copying resources/tutorials/images/webclient_run_workflow.PNG -> build/lib/resources/tutorials/images 2024-05-22T15:14:57,334 installing to build/bdist.linux-armv7l/wheel 2024-05-22T15:14:57,334 running install 2024-05-22T15:14:57,359 running install_lib 2024-05-22T15:14:57,365 creating build/bdist.linux-armv7l 2024-05-22T15:14:57,365 creating build/bdist.linux-armv7l/wheel 2024-05-22T15:14:57,367 creating build/bdist.linux-armv7l/wheel/biomero 2024-05-22T15:14:57,368 copying build/lib/biomero/constants.py -> build/bdist.linux-armv7l/wheel/biomero 2024-05-22T15:14:57,371 copying build/lib/biomero/slurm_client.py -> build/bdist.linux-armv7l/wheel/biomero 2024-05-22T15:14:57,378 copying build/lib/biomero/__init__.py -> build/bdist.linux-armv7l/wheel/biomero 2024-05-22T15:14:57,385 creating build/bdist.linux-armv7l/wheel/resources 2024-05-22T15:14:57,386 creating build/bdist.linux-armv7l/wheel/resources/tutorials 2024-05-22T15:14:57,388 copying build/lib/resources/tutorials/tutorial_Azure_slurm.md -> build/bdist.linux-armv7l/wheel/resources/tutorials 2024-05-22T15:14:57,391 copying build/lib/resources/tutorials/tutorial_cellprofiler.md -> build/bdist.linux-armv7l/wheel/resources/tutorials 2024-05-22T15:14:57,394 copying build/lib/resources/tutorials/tutorial_cellexpansion.md -> build/bdist.linux-armv7l/wheel/resources/tutorials 2024-05-22T15:14:57,397 copying build/lib/resources/tutorials/tutorial_local_slurm.md -> build/bdist.linux-armv7l/wheel/resources/tutorials 2024-05-22T15:14:57,400 copying build/lib/resources/tutorials/tutorial_GoogleCloud_slurm.md -> build/bdist.linux-armv7l/wheel/resources/tutorials 2024-05-22T15:14:57,403 creating build/bdist.linux-armv7l/wheel/resources/tutorials/images 2024-05-22T15:14:57,404 copying build/lib/resources/tutorials/images/webclient_run_cellpose.PNG -> build/bdist.linux-armv7l/wheel/resources/tutorials/images 2024-05-22T15:14:57,408 copying build/lib/resources/tutorials/images/Cells.tif -> build/bdist.linux-armv7l/wheel/resources/tutorials/images 2024-05-22T15:14:57,428 copying build/lib/resources/tutorials/images/nuclei_labels.png -> build/bdist.linux-armv7l/wheel/resources/tutorials/images 2024-05-22T15:14:57,436 copying build/lib/resources/tutorials/images/webclient_run_workflow.PNG -> build/bdist.linux-armv7l/wheel/resources/tutorials/images 2024-05-22T15:14:57,439 copying build/lib/resources/tutorials/images/webclient_init_env.PNG -> build/bdist.linux-armv7l/wheel/resources/tutorials/images 2024-05-22T15:14:57,443 copying build/lib/resources/tutorials/images/gc_allow_ssh.PNG -> build/bdist.linux-armv7l/wheel/resources/tutorials/images 2024-05-22T15:14:57,451 copying build/lib/resources/tutorials/images/webclient_init_env_done.PNG -> build/bdist.linux-armv7l/wheel/resources/tutorials/images 2024-05-22T15:14:57,459 copying build/lib/resources/tutorials/images/cellexpansion.png -> build/bdist.linux-armv7l/wheel/resources/tutorials/images 2024-05-22T15:14:57,475 copying build/lib/resources/example.config -> build/bdist.linux-armv7l/wheel/resources 2024-05-22T15:14:57,477 copying build/lib/resources/convert_zarr_to_tiff.def -> build/bdist.linux-armv7l/wheel/resources 2024-05-22T15:14:57,479 copying build/lib/resources/pull_images.sh -> build/bdist.linux-armv7l/wheel/resources 2024-05-22T15:14:57,481 copying build/lib/resources/convert_zarr_to_tiff.py -> build/bdist.linux-armv7l/wheel/resources 2024-05-22T15:14:57,483 copying build/lib/resources/slurm-config.ini -> build/bdist.linux-armv7l/wheel/resources 2024-05-22T15:14:57,485 copying build/lib/resources/job_template.sh -> build/bdist.linux-armv7l/wheel/resources 2024-05-22T15:14:57,487 copying build/lib/resources/__init__.py -> build/bdist.linux-armv7l/wheel/resources 2024-05-22T15:14:57,489 copying build/lib/resources/convert_job_array.sh -> build/bdist.linux-armv7l/wheel/resources 2024-05-22T15:14:57,698 creating build/bdist.linux-armv7l/wheel/tests 2024-05-22T15:14:57,700 creating build/bdist.linux-armv7l/wheel/tests/integration 2024-05-22T15:14:57,701 copying build/lib/tests/integration/__init__.py -> build/bdist.linux-armv7l/wheel/tests/integration 2024-05-22T15:14:57,703 creating build/bdist.linux-armv7l/wheel/tests/unit 2024-05-22T15:14:57,704 copying build/lib/tests/unit/test_slurm_client.py -> build/bdist.linux-armv7l/wheel/tests/unit 2024-05-22T15:14:57,708 copying build/lib/tests/unit/__init__.py -> build/bdist.linux-armv7l/wheel/tests/unit 2024-05-22T15:14:57,710 creating build/bdist.linux-armv7l/wheel/docs 2024-05-22T15:14:57,711 copying build/lib/docs/conf.py -> build/bdist.linux-armv7l/wheel/docs 2024-05-22T15:14:57,714 copying build/lib/docs/requirements.txt -> build/bdist.linux-armv7l/wheel/docs 2024-05-22T15:14:57,716 copying build/lib/docs/index.rst -> build/bdist.linux-armv7l/wheel/docs 2024-05-22T15:14:57,924 copying build/lib/docs/modules.rst -> build/bdist.linux-armv7l/wheel/docs 2024-05-22T15:14:57,927 copying build/lib/docs/readme_link.md -> build/bdist.linux-armv7l/wheel/docs 2024-05-22T15:14:57,929 copying build/lib/docs/Makefile -> build/bdist.linux-armv7l/wheel/docs 2024-05-22T15:14:57,932 copying build/lib/docs/biomero.rst -> build/bdist.linux-armv7l/wheel/docs 2024-05-22T15:14:57,935 copying build/lib/docs/make.bat -> build/bdist.linux-armv7l/wheel/docs 2024-05-22T15:14:57,938 copying build/lib/docs/tutorial_link.md -> build/bdist.linux-armv7l/wheel/docs 2024-05-22T15:14:57,940 running install_egg_info 2024-05-22T15:14:57,946 Copying biomero.egg-info to build/bdist.linux-armv7l/wheel/biomero-1.9.1-py3.11.egg-info 2024-05-22T15:14:57,961 running install_scripts 2024-05-22T15:14:58,002 creating build/bdist.linux-armv7l/wheel/biomero-1.9.1.dist-info/WHEEL 2024-05-22T15:14:58,008 creating '/tmp/pip-wheel-uijepnlc/.tmp-d73b2g3e/biomero-1.9.1-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2024-05-22T15:14:58,012 adding 'biomero/__init__.py' 2024-05-22T15:14:58,015 adding 'biomero/constants.py' 2024-05-22T15:14:58,033 adding 'biomero/slurm_client.py' 2024-05-22T15:14:58,039 adding 'docs/Makefile' 2024-05-22T15:14:58,042 adding 'docs/biomero.rst' 2024-05-22T15:14:58,044 adding 'docs/conf.py' 2024-05-22T15:14:58,047 adding 'docs/index.rst' 2024-05-22T15:14:58,050 adding 'docs/make.bat' 2024-05-22T15:14:58,052 adding 'docs/modules.rst' 2024-05-22T15:14:58,054 adding 'docs/readme_link.md' 2024-05-22T15:14:58,057 adding 'docs/requirements.txt' 2024-05-22T15:14:58,058 adding 'docs/tutorial_link.md' 2024-05-22T15:14:58,061 adding 'resources/__init__.py' 2024-05-22T15:14:58,063 adding 'resources/convert_job_array.sh' 2024-05-22T15:14:58,064 adding 'resources/convert_zarr_to_tiff.def' 2024-05-22T15:14:58,066 adding 'resources/convert_zarr_to_tiff.py' 2024-05-22T15:14:58,067 adding 'resources/example.config' 2024-05-22T15:14:58,068 adding 'resources/job_template.sh' 2024-05-22T15:14:58,069 adding 'resources/pull_images.sh' 2024-05-22T15:14:58,071 adding 'resources/slurm-config.ini' 2024-05-22T15:14:58,074 adding 'resources/tutorials/tutorial_Azure_slurm.md' 2024-05-22T15:14:58,076 adding 'resources/tutorials/tutorial_GoogleCloud_slurm.md' 2024-05-22T15:14:58,078 adding 'resources/tutorials/tutorial_cellexpansion.md' 2024-05-22T15:14:58,081 adding 'resources/tutorials/tutorial_cellprofiler.md' 2024-05-22T15:14:58,085 adding 'resources/tutorials/tutorial_local_slurm.md' 2024-05-22T15:14:58,125 adding 'resources/tutorials/images/Cells.tif' 2024-05-22T15:14:58,163 adding 'resources/tutorials/images/cellexpansion.png' 2024-05-22T15:14:58,174 adding 'resources/tutorials/images/gc_allow_ssh.PNG' 2024-05-22T15:14:58,197 adding 'resources/tutorials/images/nuclei_labels.png' 2024-05-22T15:14:58,200 adding 'resources/tutorials/images/webclient_init_env.PNG' 2024-05-22T15:14:58,203 adding 'resources/tutorials/images/webclient_init_env_done.PNG' 2024-05-22T15:14:58,207 adding 'resources/tutorials/images/webclient_run_cellpose.PNG' 2024-05-22T15:14:58,213 adding 'resources/tutorials/images/webclient_run_workflow.PNG' 2024-05-22T15:14:58,215 adding 'tests/integration/__init__.py' 2024-05-22T15:14:58,216 adding 'tests/unit/__init__.py' 2024-05-22T15:14:58,221 adding 'tests/unit/test_slurm_client.py' 2024-05-22T15:14:58,223 adding 'biomero-1.9.1.dist-info/LICENSE' 2024-05-22T15:14:58,230 adding 'biomero-1.9.1.dist-info/METADATA' 2024-05-22T15:14:58,231 adding 'biomero-1.9.1.dist-info/WHEEL' 2024-05-22T15:14:58,232 adding 'biomero-1.9.1.dist-info/top_level.txt' 2024-05-22T15:14:58,233 adding 'biomero-1.9.1.dist-info/RECORD' 2024-05-22T15:14:58,256 removing build/bdist.linux-armv7l/wheel 2024-05-22T15:14:58,406 Building wheel for biomero (pyproject.toml): finished with status 'done' 2024-05-22T15:14:58,431 Created wheel for biomero: filename=biomero-1.9.1-py3-none-any.whl size=1092905 sha256=4ac212ff38e26184afd600913e8895efd3480866ea109645285bd8602f184280 2024-05-22T15:14:58,433 Stored in directory: /tmp/pip-ephem-wheel-cache-4m4f6_z3/wheels/01/4b/9e/d156a89433be2c33fdaee82967c3c4562b4dd41206a715ee91 2024-05-22T15:14:58,462 Successfully built biomero 2024-05-22T15:14:58,520 Removed build tracker: '/tmp/pip-build-tracker-0gwdxcz8'