2024-05-22T21:48:21,266 Created temporary directory: /tmp/pip-build-tracker-of83roey
2024-05-22T21:48:21,267 Initialized build tracking at /tmp/pip-build-tracker-of83roey
2024-05-22T21:48:21,267 Created build tracker: /tmp/pip-build-tracker-of83roey
2024-05-22T21:48:21,268 Entered build tracker: /tmp/pip-build-tracker-of83roey
2024-05-22T21:48:21,269 Created temporary directory: /tmp/pip-wheel-31blxqax
2024-05-22T21:48:21,271 Created temporary directory: /tmp/pip-ephem-wheel-cache-mucv61ii
2024-05-22T21:48:21,297 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2024-05-22T21:48:21,300 2 location(s) to search for versions of meeko:
2024-05-22T21:48:21,300 * https://pypi.org/simple/meeko/
2024-05-22T21:48:21,300 * https://www.piwheels.org/simple/meeko/
2024-05-22T21:48:21,301 Fetching project page and analyzing links: https://pypi.org/simple/meeko/
2024-05-22T21:48:21,302 Getting page https://pypi.org/simple/meeko/
2024-05-22T21:48:21,303 Found index url https://pypi.org/simple/
2024-05-22T21:48:21,517 Fetched page https://pypi.org/simple/meeko/ as application/vnd.pypi.simple.v1+json
2024-05-22T21:48:21,523   Skipping link: No binaries permitted for meeko: https://files.pythonhosted.org/packages/38/c7/946dda1732a3aeca878b9cf1aa1a965066488479d67e4fc137d2379a79b6/meeko-0.1.dev1-py2.py3-none-any.whl (from https://pypi.org/simple/meeko/) (requires-python:>=3.5.*)
2024-05-22T21:48:21,524   Skipping link: No binaries permitted for meeko: https://files.pythonhosted.org/packages/61/30/79ecf599df2c81ead389544f3291774adddccb3ac4548eae61a7b8a62bc3/meeko-0.1.dev2-py2.py3-none-any.whl (from https://pypi.org/simple/meeko/) (requires-python:>=3.5.*)
2024-05-22T21:48:21,524   Skipping link: No binaries permitted for meeko: https://files.pythonhosted.org/packages/89/84/827a0ea853ba0970f0287eb09ba7d07186590a510d10a8b63a2d884ac447/meeko-0.1.dev3-py2.py3-none-any.whl (from https://pypi.org/simple/meeko/) (requires-python:>=3.5.*)
2024-05-22T21:48:21,525   Found link https://files.pythonhosted.org/packages/ec/d2/c1eaf8b818377fbe788daf86dc8994fcc4ae2d4b6fa00c2a5c81d8aa2ca6/meeko-0.1.dev3.tar.gz (from https://pypi.org/simple/meeko/) (requires-python:>=3.5.*), version: 0.1.dev3
2024-05-22T21:48:21,526   Skipping link: No binaries permitted for meeko: https://files.pythonhosted.org/packages/f1/b6/fe6205ca310917d121b6f96259c845d94ef627d7473fc2bd119235b5b8d3/meeko-0.2-py3-none-any.whl (from https://pypi.org/simple/meeko/) (requires-python:>=3.5.*)
2024-05-22T21:48:21,527   Found link https://files.pythonhosted.org/packages/23/24/36f5b53aa74cd50f5e6cea8d5d5f3b99b6f3ea1e2a059d13f5f8d51a0624/meeko-0.2.tar.gz (from https://pypi.org/simple/meeko/) (requires-python:>=3.5.*), version: 0.2
2024-05-22T21:48:21,528   Skipping link: No binaries permitted for meeko: https://files.pythonhosted.org/packages/15/e4/e0195c8d07d6c9226c9940ecb9164e6120e9502f64bee2a6303fb0a75ca1/meeko-0.3.0-py3-none-any.whl (from https://pypi.org/simple/meeko/) (requires-python:>=3.5.*)
2024-05-22T21:48:21,529   Found link https://files.pythonhosted.org/packages/1b/e5/ff954b3fbef337ac7cd0d29ebab8864385aad66fe528aae73d05604dddfd/meeko-0.3.0.tar.gz (from https://pypi.org/simple/meeko/) (requires-python:>=3.5.*), version: 0.3.0
2024-05-22T21:48:21,530   Skipping link: No binaries permitted for meeko: https://files.pythonhosted.org/packages/7a/ff/6e57ed90d6384e76ea2acb31a929f8f036468e07c80319764805398db9d8/meeko-0.3.1-py3-none-any.whl (from https://pypi.org/simple/meeko/) (requires-python:>=3.5.*)
2024-05-22T21:48:21,531   Found link https://files.pythonhosted.org/packages/33/b4/3a1d12da1c3bc0c7381c51aec8e51206f2b28b8c394b23cc4b373593c478/meeko-0.3.1.tar.gz (from https://pypi.org/simple/meeko/) (requires-python:>=3.5.*), version: 0.3.1
2024-05-22T21:48:21,532   Skipping link: No binaries permitted for meeko: https://files.pythonhosted.org/packages/1a/9d/28755e7eb7679082f4e00ef3e9ad3365e9f90c0d341e95289306a7d10831/meeko-0.3.2-py3-none-any.whl (from https://pypi.org/simple/meeko/) (requires-python:>=3.5.*)
2024-05-22T21:48:21,532   Found link https://files.pythonhosted.org/packages/04/fd/03d4d7fb97c6ce5789eea55cc8a5a27b3c9ba2e9e8944c46855d0356786d/meeko-0.3.2.tar.gz (from https://pypi.org/simple/meeko/) (requires-python:>=3.5.*), version: 0.3.2
2024-05-22T21:48:21,533   Skipping link: No binaries permitted for meeko: https://files.pythonhosted.org/packages/53/ae/fb019569a4c5d74bcd83434261e41b322aacfae687f38b1c8596c24be8b2/meeko-0.3.3-py3-none-any.whl (from https://pypi.org/simple/meeko/) (requires-python:>=3.5.*)
2024-05-22T21:48:21,535   Found link https://files.pythonhosted.org/packages/97/42/a9846a4bd8c90d8cf64857e183f3dc55f0553bad814a25ad9e454d51092b/meeko-0.3.3.tar.gz (from https://pypi.org/simple/meeko/) (requires-python:>=3.5.*), version: 0.3.3
2024-05-22T21:48:21,535   Skipping link: No binaries permitted for meeko: https://files.pythonhosted.org/packages/a1/38/e64382d54a507d7cd9b25472e91476d105e312ae8e3f88feacbd3ed6c4ca/meeko-0.4.0-py3-none-any.whl (from https://pypi.org/simple/meeko/) (requires-python:>=3.5.*)
2024-05-22T21:48:21,536   Found link https://files.pythonhosted.org/packages/df/e8/5599f1f3b4d82a6fd509e9ba1494866c9be26cb9cba57cffe433fb6573e1/meeko-0.4.0.tar.gz (from https://pypi.org/simple/meeko/) (requires-python:>=3.5.*), version: 0.4.0
2024-05-22T21:48:21,536   Skipping link: No binaries permitted for meeko: https://files.pythonhosted.org/packages/0f/97/aaae239d66f408f0d58c949bf4bc7c62add39fbf9ff22733fb087937ca82/meeko-0.5.0-py3-none-any.whl (from https://pypi.org/simple/meeko/) (requires-python:>=3.5)
2024-05-22T21:48:21,537   Found link https://files.pythonhosted.org/packages/78/17/8947c029c13d2f55f3a4833e17722dd275f94b10a7c32914374981eb8c8e/meeko-0.5.0.tar.gz (from https://pypi.org/simple/meeko/) (requires-python:>=3.5), version: 0.5.0
2024-05-22T21:48:21,538   Skipping link: No binaries permitted for meeko: https://files.pythonhosted.org/packages/e6/68/0fb8cfde91aac2fdb8377048043c70f1d7630bcdeb08398b0308c612ee53/meeko-0.5.1-py3-none-any.whl (from https://pypi.org/simple/meeko/) (requires-python:<3.12,>=3.5)
2024-05-22T21:48:21,539   Found link https://files.pythonhosted.org/packages/0f/cb/e51f5d788b046de6ddec15df59b455aef7c13914c5d2d5e519275ccf18a3/meeko-0.5.1.tar.gz (from https://pypi.org/simple/meeko/) (requires-python:<3.12,>=3.5), version: 0.5.1
2024-05-22T21:48:21,540   Skipping link: No binaries permitted for meeko: https://files.pythonhosted.org/packages/0f/93/453299cc4dca86c36c7eb9c35374078bfe1aa64a062d55d850286e73b083/meeko-0.6.0a0-py3-none-any.whl (from https://pypi.org/simple/meeko/) (requires-python:>=3.5)
2024-05-22T21:48:21,540   Found link https://files.pythonhosted.org/packages/17/d1/0906b1cb62d6d1bad1b7f1ab8d24d13fc7b8df66759ef4d0ce4fa4378de6/meeko-0.6.0a0.tar.gz (from https://pypi.org/simple/meeko/) (requires-python:>=3.5), version: 0.6.0a0
2024-05-22T21:48:21,541   Skipping link: No binaries permitted for meeko: https://files.pythonhosted.org/packages/0a/9f/774439a1db856b584ee216bea0e5319027518e7495bed613a65dbb960793/meeko-0.6.0a1-py3-none-any.whl (from https://pypi.org/simple/meeko/) (requires-python:>=3.5)
2024-05-22T21:48:21,542   Found link https://files.pythonhosted.org/packages/6e/0f/c39e837be0f4664bf9e3d9d139cbf5e1d2d836e671ca7769522eb5326a25/meeko-0.6.0a1.tar.gz (from https://pypi.org/simple/meeko/) (requires-python:>=3.5), version: 0.6.0a1
2024-05-22T21:48:21,543   Skipping link: No binaries permitted for meeko: https://files.pythonhosted.org/packages/3b/68/0733d4e5205baefc5484705710a8754117a50ca8acb4e1059b2908c38d4a/meeko-0.6.0a2-py3-none-any.whl (from https://pypi.org/simple/meeko/) (requires-python:>=3.5)
2024-05-22T21:48:21,544   Found link https://files.pythonhosted.org/packages/53/af/920d5c0225b08924a0c97746264ef33c4ba5d9622548e7b76e0a273e4999/meeko-0.6.0a2.tar.gz (from https://pypi.org/simple/meeko/) (requires-python:>=3.5), version: 0.6.0a2
2024-05-22T21:48:21,544   Skipping link: No binaries permitted for meeko: https://files.pythonhosted.org/packages/62/c9/674cb7336acafc89f9fbb77fd80311d57743d96cda81fdd62f6f99e35c31/meeko-0.6.0a3-py3-none-any.whl (from https://pypi.org/simple/meeko/) (requires-python:>=3.5)
2024-05-22T21:48:21,545   Found link https://files.pythonhosted.org/packages/a5/08/8abf3a5732e1c263114060366de04a76fde2c3ca6374e2fea80369e88194/meeko-0.6.0a3.tar.gz (from https://pypi.org/simple/meeko/) (requires-python:>=3.5), version: 0.6.0a3
2024-05-22T21:48:21,546 Fetching project page and analyzing links: https://www.piwheels.org/simple/meeko/
2024-05-22T21:48:21,547 Getting page https://www.piwheels.org/simple/meeko/
2024-05-22T21:48:21,548 Found index url https://www.piwheels.org/simple/
2024-05-22T21:48:21,731 Fetched page https://www.piwheels.org/simple/meeko/ as text/html
2024-05-22T21:48:21,735   Skipping link: No binaries permitted for meeko: https://www.piwheels.org/simple/meeko/meeko-0.6.0a3-py3-none-any.whl#sha256=0a658b5458906667839e515e452caf347ab0cbc571061c216dabe7b4e54c6b3d (from https://www.piwheels.org/simple/meeko/) (requires-python:>=3.5)
2024-05-22T21:48:21,736   Skipping link: No binaries permitted for meeko: https://www.piwheels.org/simple/meeko/meeko-0.6.0a2-py3-none-any.whl#sha256=20994b5df8114eec204a0608030a8291e15c7a9214fdb1728b27489c3920027b (from https://www.piwheels.org/simple/meeko/) (requires-python:>=3.5)
2024-05-22T21:48:21,736   Skipping link: No binaries permitted for meeko: https://www.piwheels.org/simple/meeko/meeko-0.6.0a1-py3-none-any.whl#sha256=0ed52cfec48b37b3da175a1426f743aa6095efa144df31884f9cb86fb9fe40ad (from https://www.piwheels.org/simple/meeko/) (requires-python:>=3.5)
2024-05-22T21:48:21,737   Skipping link: No binaries permitted for meeko: https://www.piwheels.org/simple/meeko/meeko-0.6.0a0-py3-none-any.whl#sha256=b06250c9721d6cd2d9c001803a610364ce95f5084fded20180d0c25b77ef6b50 (from https://www.piwheels.org/simple/meeko/) (requires-python:>=3.5)
2024-05-22T21:48:21,737   Skipping link: No binaries permitted for meeko: https://www.piwheels.org/simple/meeko/meeko-0.5.0-py3-none-any.whl#sha256=716f47c9471895bb7314e06164f1748d2cb8f53987d8da9d52ec129b2c91cfc3 (from https://www.piwheels.org/simple/meeko/) (requires-python:>=3.5)
2024-05-22T21:48:21,738   Skipping link: No binaries permitted for meeko: https://www.piwheels.org/simple/meeko/meeko-0.4.0-py3-none-any.whl#sha256=ab401b9be3dd1941184d0ad836b51fc577db7d02d277f08ffc26285d54a6ee5e (from https://www.piwheels.org/simple/meeko/) (requires-python:>=3.5.*)
2024-05-22T21:48:21,738   Skipping link: No binaries permitted for meeko: https://www.piwheels.org/simple/meeko/meeko-0.3.3-py3-none-any.whl#sha256=f226db6d061657ac79463f4cc9b02ac1639cff39efeee9d289820c1fc6895382 (from https://www.piwheels.org/simple/meeko/) (requires-python:>=3.5.*)
2024-05-22T21:48:21,739   Skipping link: No binaries permitted for meeko: https://www.piwheels.org/simple/meeko/meeko-0.3.2-py3-none-any.whl#sha256=c36d011eb03705ad1d8fd598ce5e441b9c55c76b1c37011d95563b4fe5449494 (from https://www.piwheels.org/simple/meeko/) (requires-python:>=3.5.*)
2024-05-22T21:48:21,740   Skipping link: No binaries permitted for meeko: https://www.piwheels.org/simple/meeko/meeko-0.3.1-py3-none-any.whl#sha256=628a26bdbddab96cde118d3180a404144108c33edcbbefe3ade9e84f286cece0 (from https://www.piwheels.org/simple/meeko/) (requires-python:>=3.5.*)
2024-05-22T21:48:21,740   Skipping link: No binaries permitted for meeko: https://www.piwheels.org/simple/meeko/meeko-0.3.0-py3-none-any.whl#sha256=508ada8f77e474225a99c3905e6eb53c7db2a45a02c84a774d9f78a889a8da1d (from https://www.piwheels.org/simple/meeko/) (requires-python:>=3.5.*)
2024-05-22T21:48:21,741   Skipping link: No binaries permitted for meeko: https://www.piwheels.org/simple/meeko/meeko-0.2-py3-none-any.whl#sha256=88c75d8ed22efc73b451ac641472aa931ccbf3ef36f2f236c14a2d45d58541b2 (from https://www.piwheels.org/simple/meeko/) (requires-python:>=3.5.*)
2024-05-22T21:48:21,741   Skipping link: No binaries permitted for meeko: https://www.piwheels.org/simple/meeko/meeko-0.1.dev3-py2.py3-none-any.whl#sha256=feb4d48b05302efc1168ac2365ebfa920dd98fe24fca3f5cafe60376ed796caa (from https://www.piwheels.org/simple/meeko/) (requires-python:>=3.5.*)
2024-05-22T21:48:21,742 Skipping link: not a file: https://www.piwheels.org/simple/meeko/
2024-05-22T21:48:21,743 Skipping link: not a file: https://pypi.org/simple/meeko/
2024-05-22T21:48:21,762 Given no hashes to check 1 links for project 'meeko': discarding no candidates
2024-05-22T21:48:21,780 Collecting meeko==0.5.1
2024-05-22T21:48:21,782   Created temporary directory: /tmp/pip-unpack-uikwbkpm
2024-05-22T21:48:22,083   Downloading meeko-0.5.1.tar.gz (125 kB)
2024-05-22T21:48:22,313   Added meeko==0.5.1 from https://files.pythonhosted.org/packages/0f/cb/e51f5d788b046de6ddec15df59b455aef7c13914c5d2d5e519275ccf18a3/meeko-0.5.1.tar.gz to build tracker '/tmp/pip-build-tracker-of83roey'
2024-05-22T21:48:22,315   Running setup.py (path:/tmp/pip-wheel-31blxqax/meeko_f4081b9fdc4245e992cde42d1db284d2/setup.py) egg_info for package meeko
2024-05-22T21:48:22,316   Created temporary directory: /tmp/pip-pip-egg-info-edr3wkfy
2024-05-22T21:48:22,316   Preparing metadata (setup.py): started
2024-05-22T21:48:22,317   Running command python setup.py egg_info
2024-05-22T21:48:23,443   running egg_info
2024-05-22T21:48:23,448   creating /tmp/pip-pip-egg-info-edr3wkfy/meeko.egg-info
2024-05-22T21:48:23,479   writing /tmp/pip-pip-egg-info-edr3wkfy/meeko.egg-info/PKG-INFO
2024-05-22T21:48:23,486   writing dependency_links to /tmp/pip-pip-egg-info-edr3wkfy/meeko.egg-info/dependency_links.txt
2024-05-22T21:48:23,487   writing entry points to /tmp/pip-pip-egg-info-edr3wkfy/meeko.egg-info/entry_points.txt
2024-05-22T21:48:23,489   writing requirements to /tmp/pip-pip-egg-info-edr3wkfy/meeko.egg-info/requires.txt
2024-05-22T21:48:23,489   writing top-level names to /tmp/pip-pip-egg-info-edr3wkfy/meeko.egg-info/top_level.txt
2024-05-22T21:48:23,491   writing manifest file '/tmp/pip-pip-egg-info-edr3wkfy/meeko.egg-info/SOURCES.txt'
2024-05-22T21:48:23,582   reading manifest file '/tmp/pip-pip-egg-info-edr3wkfy/meeko.egg-info/SOURCES.txt'
2024-05-22T21:48:23,583   reading manifest template 'MANIFEST.in'
2024-05-22T21:48:23,586   warning: no files found matching 'example/*'
2024-05-22T21:48:23,589   adding license file 'LICENSE'
2024-05-22T21:48:23,592   writing manifest file '/tmp/pip-pip-egg-info-edr3wkfy/meeko.egg-info/SOURCES.txt'
2024-05-22T21:48:23,711   Preparing metadata (setup.py): finished with status 'done'
2024-05-22T21:48:23,716   Source in /tmp/pip-wheel-31blxqax/meeko_f4081b9fdc4245e992cde42d1db284d2 has version 0.5.1, which satisfies requirement meeko==0.5.1 from https://files.pythonhosted.org/packages/0f/cb/e51f5d788b046de6ddec15df59b455aef7c13914c5d2d5e519275ccf18a3/meeko-0.5.1.tar.gz
2024-05-22T21:48:23,717   Removed meeko==0.5.1 from https://files.pythonhosted.org/packages/0f/cb/e51f5d788b046de6ddec15df59b455aef7c13914c5d2d5e519275ccf18a3/meeko-0.5.1.tar.gz from build tracker '/tmp/pip-build-tracker-of83roey'
2024-05-22T21:48:23,725 Created temporary directory: /tmp/pip-unpack-ngwjciyx
2024-05-22T21:48:23,726 Created temporary directory: /tmp/pip-unpack-b4pzu2iz
2024-05-22T21:48:23,732 Building wheels for collected packages: meeko
2024-05-22T21:48:23,736   Created temporary directory: /tmp/pip-wheel-2_kqdiuw
2024-05-22T21:48:23,736   Building wheel for meeko (setup.py): started
2024-05-22T21:48:23,737   Destination directory: /tmp/pip-wheel-2_kqdiuw
2024-05-22T21:48:23,738   Running command python setup.py bdist_wheel
2024-05-22T21:48:24,835   running bdist_wheel
2024-05-22T21:48:24,933   running build
2024-05-22T21:48:24,934   running build_py
2024-05-22T21:48:24,962   creating build
2024-05-22T21:48:24,962   creating build/lib
2024-05-22T21:48:24,963   creating build/lib/meeko
2024-05-22T21:48:24,965   copying meeko/macrocycle.py -> build/lib/meeko
2024-05-22T21:48:24,967   copying meeko/covalentbuilder.py -> build/lib/meeko
2024-05-22T21:48:24,970   copying meeko/molecule_pdbqt.py -> build/lib/meeko
2024-05-22T21:48:24,972   copying meeko/preparation.py -> build/lib/meeko
2024-05-22T21:48:24,975   copying meeko/gridbox.py -> build/lib/meeko
2024-05-22T21:48:24,977   copying meeko/writer.py -> build/lib/meeko
2024-05-22T21:48:24,980   copying meeko/rdkit_mol_create.py -> build/lib/meeko
2024-05-22T21:48:24,982   copying meeko/atomtyper.py -> build/lib/meeko
2024-05-22T21:48:24,985   copying meeko/bondtyper.py -> build/lib/meeko
2024-05-22T21:48:24,987   copying meeko/hydrate.py -> build/lib/meeko
2024-05-22T21:48:24,989   copying meeko/flexibility.py -> build/lib/meeko
2024-05-22T21:48:24,991   copying meeko/__init__.py -> build/lib/meeko
2024-05-22T21:48:24,993   copying meeko/receptor_pdbqt.py -> build/lib/meeko
2024-05-22T21:48:24,995   copying meeko/molsetup.py -> build/lib/meeko
2024-05-22T21:48:24,998   copying meeko/reactive.py -> build/lib/meeko
2024-05-22T21:48:25,001   creating build/lib/meeko/analysis
2024-05-22T21:48:25,002   copying meeko/analysis/fingerprint_interactions.py -> build/lib/meeko/analysis
2024-05-22T21:48:25,004   copying meeko/analysis/__init__.py -> build/lib/meeko/analysis
2024-05-22T21:48:25,006   copying meeko/analysis/interactions.py -> build/lib/meeko/analysis
2024-05-22T21:48:25,009   creating build/lib/meeko/utils
2024-05-22T21:48:25,010   copying meeko/utils/utils.py -> build/lib/meeko/utils
2024-05-22T21:48:25,012   copying meeko/utils/van_der_waals_radius_table.py -> build/lib/meeko/utils
2024-05-22T21:48:25,014   copying meeko/utils/pdbutils.py -> build/lib/meeko/utils
2024-05-22T21:48:25,016   copying meeko/utils/autodock4_atom_types_elements.py -> build/lib/meeko/utils
2024-05-22T21:48:25,018   copying meeko/utils/covalent_radius_table.py -> build/lib/meeko/utils
2024-05-22T21:48:25,020   copying meeko/utils/geomutils.py -> build/lib/meeko/utils
2024-05-22T21:48:25,022   copying meeko/utils/__init__.py -> build/lib/meeko/utils
2024-05-22T21:48:25,024   copying meeko/utils/rdkitutils.py -> build/lib/meeko/utils
2024-05-22T21:48:25,026   copying meeko/utils/obutils.py -> build/lib/meeko/utils
2024-05-22T21:48:25,029   creating build/lib/meeko/cli
2024-05-22T21:48:25,030   copying meeko/cli/mk_export.py -> build/lib/meeko/cli
2024-05-22T21:48:25,032   copying meeko/cli/mk_prepare_receptor.py -> build/lib/meeko/cli
2024-05-22T21:48:25,035   copying meeko/cli/mk_prepare_ligand.py -> build/lib/meeko/cli
2024-05-22T21:48:25,038   copying meeko/cli/__init__.py -> build/lib/meeko/cli
2024-05-22T21:48:25,039   running egg_info
2024-05-22T21:48:25,100   writing meeko.egg-info/PKG-INFO
2024-05-22T21:48:25,105   writing dependency_links to meeko.egg-info/dependency_links.txt
2024-05-22T21:48:25,107   writing entry points to meeko.egg-info/entry_points.txt
2024-05-22T21:48:25,108   writing requirements to meeko.egg-info/requires.txt
2024-05-22T21:48:25,110   writing top-level names to meeko.egg-info/top_level.txt
2024-05-22T21:48:25,145   reading manifest file 'meeko.egg-info/SOURCES.txt'
2024-05-22T21:48:25,150   reading manifest template 'MANIFEST.in'
2024-05-22T21:48:25,152   warning: no files found matching 'example/*'
2024-05-22T21:48:25,154   adding license file 'LICENSE'
2024-05-22T21:48:25,157   writing manifest file 'meeko.egg-info/SOURCES.txt'
2024-05-22T21:48:25,160   /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'meeko.data' is absent from the `packages` configuration.
2024-05-22T21:48:25,161   !!

2024-05-22T21:48:25,162           ********************************************************************************
2024-05-22T21:48:25,163           ############################
2024-05-22T21:48:25,163           # Package would be ignored #
2024-05-22T21:48:25,164           ############################
2024-05-22T21:48:25,165           Python recognizes 'meeko.data' as an importable package[^1],
2024-05-22T21:48:25,165           but it is absent from setuptools' `packages` configuration.

2024-05-22T21:48:25,167           This leads to an ambiguous overall configuration. If you want to distribute this
2024-05-22T21:48:25,167           package, please make sure that 'meeko.data' is explicitly added
2024-05-22T21:48:25,168           to the `packages` configuration field.

2024-05-22T21:48:25,170           Alternatively, you can also rely on setuptools' discovery methods
2024-05-22T21:48:25,171           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-05-22T21:48:25,172           instead of `find_packages(...)`/`find:`).

2024-05-22T21:48:25,176           You can read more about "package discovery" on setuptools documentation page:

2024-05-22T21:48:25,178           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-05-22T21:48:25,180           If you don't want 'meeko.data' to be distributed and are
2024-05-22T21:48:25,181           already explicitly excluding 'meeko.data' via
2024-05-22T21:48:25,182           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-05-22T21:48:25,183           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-05-22T21:48:25,184           combination with a more fine grained `package-data` configuration.

2024-05-22T21:48:25,185           You can read more about "package data files" on setuptools documentation page:

2024-05-22T21:48:25,187           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-05-22T21:48:25,190           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-05-22T21:48:25,191                 even if it does not contain any `.py` files.
2024-05-22T21:48:25,192                 On the other hand, currently there is no concept of package data
2024-05-22T21:48:25,192                 directory, all directories are treated like packages.
2024-05-22T21:48:25,193           ********************************************************************************

2024-05-22T21:48:25,194   !!
2024-05-22T21:48:25,194     check.warn(importable)
2024-05-22T21:48:25,195   /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'meeko.tmp' is absent from the `packages` configuration.
2024-05-22T21:48:25,195   !!

2024-05-22T21:48:25,197           ********************************************************************************
2024-05-22T21:48:25,197           ############################
2024-05-22T21:48:25,198           # Package would be ignored #
2024-05-22T21:48:25,198           ############################
2024-05-22T21:48:25,199           Python recognizes 'meeko.tmp' as an importable package[^1],
2024-05-22T21:48:25,199           but it is absent from setuptools' `packages` configuration.

2024-05-22T21:48:25,201           This leads to an ambiguous overall configuration. If you want to distribute this
2024-05-22T21:48:25,201           package, please make sure that 'meeko.tmp' is explicitly added
2024-05-22T21:48:25,202           to the `packages` configuration field.

2024-05-22T21:48:25,203           Alternatively, you can also rely on setuptools' discovery methods
2024-05-22T21:48:25,205           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-05-22T21:48:25,206           instead of `find_packages(...)`/`find:`).

2024-05-22T21:48:25,208           You can read more about "package discovery" on setuptools documentation page:

2024-05-22T21:48:25,210           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-05-22T21:48:25,213           If you don't want 'meeko.tmp' to be distributed and are
2024-05-22T21:48:25,214           already explicitly excluding 'meeko.tmp' via
2024-05-22T21:48:25,216           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-05-22T21:48:25,217           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-05-22T21:48:25,219           combination with a more fine grained `package-data` configuration.

2024-05-22T21:48:25,222           You can read more about "package data files" on setuptools documentation page:

2024-05-22T21:48:25,223           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-05-22T21:48:25,225           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-05-22T21:48:25,226                 even if it does not contain any `.py` files.
2024-05-22T21:48:25,226                 On the other hand, currently there is no concept of package data
2024-05-22T21:48:25,227                 directory, all directories are treated like packages.
2024-05-22T21:48:25,228           ********************************************************************************

2024-05-22T21:48:25,229   !!
2024-05-22T21:48:25,230     check.warn(importable)
2024-05-22T21:48:25,230   creating build/lib/meeko/data
2024-05-22T21:48:25,231   copying meeko/data/atomtypes.txt -> build/lib/meeko/data
2024-05-22T21:48:25,231   copying meeko/data/flexres_templates.json -> build/lib/meeko/data
2024-05-22T21:48:25,232   copying meeko/data/pi_non_aromatic.txt -> build/lib/meeko/data
2024-05-22T21:48:25,232   copying meeko/data/residue_params.json -> build/lib/meeko/data
2024-05-22T21:48:25,233   copying meeko/data/waterfield.txt -> build/lib/meeko/data
2024-05-22T21:48:25,233   creating build/lib/meeko/tmp
2024-05-22T21:48:25,234   copying meeko/tmp/compute_water_map.py -> build/lib/meeko/tmp
2024-05-22T21:48:25,234   copying meeko/tmp/water_builder.py -> build/lib/meeko/tmp
2024-05-22T21:48:25,235   copying meeko/tmp/water_map_builder.py -> build/lib/meeko/tmp
2024-05-22T21:48:25,253   /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated.
2024-05-22T21:48:25,253   !!

2024-05-22T21:48:25,254           ********************************************************************************
2024-05-22T21:48:25,255           Please avoid running ``setup.py`` directly.
2024-05-22T21:48:25,255           Instead, use pypa/build, pypa/installer or other
2024-05-22T21:48:25,256           standards-based tools.

2024-05-22T21:48:25,257           See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details.
2024-05-22T21:48:25,257           ********************************************************************************

2024-05-22T21:48:25,258   !!
2024-05-22T21:48:25,259     self.initialize_options()
2024-05-22T21:48:25,279   installing to build/bdist.linux-armv7l/wheel
2024-05-22T21:48:25,280   running install
2024-05-22T21:48:25,305   running install_lib
2024-05-22T21:48:25,330   creating build/bdist.linux-armv7l
2024-05-22T21:48:25,331   creating build/bdist.linux-armv7l/wheel
2024-05-22T21:48:25,333   creating build/bdist.linux-armv7l/wheel/meeko
2024-05-22T21:48:25,334   copying build/lib/meeko/macrocycle.py -> build/bdist.linux-armv7l/wheel/meeko
2024-05-22T21:48:25,338   creating build/bdist.linux-armv7l/wheel/meeko/data
2024-05-22T21:48:25,338   copying build/lib/meeko/data/residue_params.json -> build/bdist.linux-armv7l/wheel/meeko/data
2024-05-22T21:48:25,345   copying build/lib/meeko/data/atomtypes.txt -> build/bdist.linux-armv7l/wheel/meeko/data
2024-05-22T21:48:25,347   copying build/lib/meeko/data/waterfield.txt -> build/bdist.linux-armv7l/wheel/meeko/data
2024-05-22T21:48:25,349   copying build/lib/meeko/data/pi_non_aromatic.txt -> build/bdist.linux-armv7l/wheel/meeko/data
2024-05-22T21:48:25,352   copying build/lib/meeko/data/flexres_templates.json -> build/bdist.linux-armv7l/wheel/meeko/data
2024-05-22T21:48:25,354   copying build/lib/meeko/covalentbuilder.py -> build/bdist.linux-armv7l/wheel/meeko
2024-05-22T21:48:25,357   copying build/lib/meeko/molecule_pdbqt.py -> build/bdist.linux-armv7l/wheel/meeko
2024-05-22T21:48:25,361   creating build/bdist.linux-armv7l/wheel/meeko/analysis
2024-05-22T21:48:25,362   copying build/lib/meeko/analysis/fingerprint_interactions.py -> build/bdist.linux-armv7l/wheel/meeko/analysis
2024-05-22T21:48:25,364   copying build/lib/meeko/analysis/__init__.py -> build/bdist.linux-armv7l/wheel/meeko/analysis
2024-05-22T21:48:25,366   copying build/lib/meeko/analysis/interactions.py -> build/bdist.linux-armv7l/wheel/meeko/analysis
2024-05-22T21:48:25,369   creating build/bdist.linux-armv7l/wheel/meeko/utils
2024-05-22T21:48:25,370   copying build/lib/meeko/utils/utils.py -> build/bdist.linux-armv7l/wheel/meeko/utils
2024-05-22T21:48:25,373   copying build/lib/meeko/utils/van_der_waals_radius_table.py -> build/bdist.linux-armv7l/wheel/meeko/utils
2024-05-22T21:48:25,375   copying build/lib/meeko/utils/pdbutils.py -> build/bdist.linux-armv7l/wheel/meeko/utils
2024-05-22T21:48:25,377   copying build/lib/meeko/utils/autodock4_atom_types_elements.py -> build/bdist.linux-armv7l/wheel/meeko/utils
2024-05-22T21:48:25,379   copying build/lib/meeko/utils/covalent_radius_table.py -> build/bdist.linux-armv7l/wheel/meeko/utils
2024-05-22T21:48:25,381   copying build/lib/meeko/utils/geomutils.py -> build/bdist.linux-armv7l/wheel/meeko/utils
2024-05-22T21:48:25,383   copying build/lib/meeko/utils/__init__.py -> build/bdist.linux-armv7l/wheel/meeko/utils
2024-05-22T21:48:25,385   copying build/lib/meeko/utils/rdkitutils.py -> build/bdist.linux-armv7l/wheel/meeko/utils
2024-05-22T21:48:25,387   copying build/lib/meeko/utils/obutils.py -> build/bdist.linux-armv7l/wheel/meeko/utils
2024-05-22T21:48:25,389   copying build/lib/meeko/preparation.py -> build/bdist.linux-armv7l/wheel/meeko
2024-05-22T21:48:25,391   copying build/lib/meeko/gridbox.py -> build/bdist.linux-armv7l/wheel/meeko
2024-05-22T21:48:25,394   copying build/lib/meeko/writer.py -> build/bdist.linux-armv7l/wheel/meeko
2024-05-22T21:48:25,397   creating build/bdist.linux-armv7l/wheel/meeko/tmp
2024-05-22T21:48:25,397   copying build/lib/meeko/tmp/water_map_builder.py -> build/bdist.linux-armv7l/wheel/meeko/tmp
2024-05-22T21:48:25,400   copying build/lib/meeko/tmp/water_builder.py -> build/bdist.linux-armv7l/wheel/meeko/tmp
2024-05-22T21:48:25,403   copying build/lib/meeko/tmp/compute_water_map.py -> build/bdist.linux-armv7l/wheel/meeko/tmp
2024-05-22T21:48:25,406   copying build/lib/meeko/rdkit_mol_create.py -> build/bdist.linux-armv7l/wheel/meeko
2024-05-22T21:48:25,408   creating build/bdist.linux-armv7l/wheel/meeko/cli
2024-05-22T21:48:25,409   copying build/lib/meeko/cli/mk_export.py -> build/bdist.linux-armv7l/wheel/meeko/cli
2024-05-22T21:48:25,412   copying build/lib/meeko/cli/mk_prepare_receptor.py -> build/bdist.linux-armv7l/wheel/meeko/cli
2024-05-22T21:48:25,414   copying build/lib/meeko/cli/mk_prepare_ligand.py -> build/bdist.linux-armv7l/wheel/meeko/cli
2024-05-22T21:48:25,417   copying build/lib/meeko/cli/__init__.py -> build/bdist.linux-armv7l/wheel/meeko/cli
2024-05-22T21:48:25,419   copying build/lib/meeko/atomtyper.py -> build/bdist.linux-armv7l/wheel/meeko
2024-05-22T21:48:25,421   copying build/lib/meeko/bondtyper.py -> build/bdist.linux-armv7l/wheel/meeko
2024-05-22T21:48:25,423   copying build/lib/meeko/hydrate.py -> build/bdist.linux-armv7l/wheel/meeko
2024-05-22T21:48:25,425   copying build/lib/meeko/flexibility.py -> build/bdist.linux-armv7l/wheel/meeko
2024-05-22T21:48:25,428   copying build/lib/meeko/__init__.py -> build/bdist.linux-armv7l/wheel/meeko
2024-05-22T21:48:25,429   copying build/lib/meeko/receptor_pdbqt.py -> build/bdist.linux-armv7l/wheel/meeko
2024-05-22T21:48:25,432   copying build/lib/meeko/molsetup.py -> build/bdist.linux-armv7l/wheel/meeko
2024-05-22T21:48:25,435   copying build/lib/meeko/reactive.py -> build/bdist.linux-armv7l/wheel/meeko
2024-05-22T21:48:25,437   running install_egg_info
2024-05-22T21:48:25,470   Copying meeko.egg-info to build/bdist.linux-armv7l/wheel/meeko-0.5.1-py3.11.egg-info
2024-05-22T21:48:25,483   running install_scripts
2024-05-22T21:48:25,500   creating build/bdist.linux-armv7l/wheel/meeko-0.5.1.dist-info/WHEEL
2024-05-22T21:48:25,503   creating '/tmp/pip-wheel-2_kqdiuw/meeko-0.5.1-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2024-05-22T21:48:25,506   adding 'meeko/__init__.py'
2024-05-22T21:48:25,508   adding 'meeko/atomtyper.py'
2024-05-22T21:48:25,510   adding 'meeko/bondtyper.py'
2024-05-22T21:48:25,512   adding 'meeko/covalentbuilder.py'
2024-05-22T21:48:25,515   adding 'meeko/flexibility.py'
2024-05-22T21:48:25,516   adding 'meeko/gridbox.py'
2024-05-22T21:48:25,518   adding 'meeko/hydrate.py'
2024-05-22T21:48:25,520   adding 'meeko/macrocycle.py'
2024-05-22T21:48:25,524   adding 'meeko/molecule_pdbqt.py'
2024-05-22T21:48:25,528   adding 'meeko/molsetup.py'
2024-05-22T21:48:25,530   adding 'meeko/preparation.py'
2024-05-22T21:48:25,532   adding 'meeko/rdkit_mol_create.py'
2024-05-22T21:48:25,534   adding 'meeko/reactive.py'
2024-05-22T21:48:25,537   adding 'meeko/receptor_pdbqt.py'
2024-05-22T21:48:25,539   adding 'meeko/writer.py'
2024-05-22T21:48:25,541   adding 'meeko/analysis/__init__.py'
2024-05-22T21:48:25,542   adding 'meeko/analysis/fingerprint_interactions.py'
2024-05-22T21:48:25,544   adding 'meeko/analysis/interactions.py'
2024-05-22T21:48:25,545   adding 'meeko/cli/__init__.py'
2024-05-22T21:48:25,547   adding 'meeko/cli/mk_export.py'
2024-05-22T21:48:25,549   adding 'meeko/cli/mk_prepare_ligand.py'
2024-05-22T21:48:25,552   adding 'meeko/cli/mk_prepare_receptor.py'
2024-05-22T21:48:25,554   adding 'meeko/data/atomtypes.txt'
2024-05-22T21:48:25,555   adding 'meeko/data/flexres_templates.json'
2024-05-22T21:48:25,557   adding 'meeko/data/pi_non_aromatic.txt'
2024-05-22T21:48:25,567   adding 'meeko/data/residue_params.json'
2024-05-22T21:48:25,570   adding 'meeko/data/waterfield.txt'
2024-05-22T21:48:25,572   adding 'meeko/tmp/compute_water_map.py'
2024-05-22T21:48:25,575   adding 'meeko/tmp/water_builder.py'
2024-05-22T21:48:25,577   adding 'meeko/tmp/water_map_builder.py'
2024-05-22T21:48:25,579   adding 'meeko/utils/__init__.py'
2024-05-22T21:48:25,581   adding 'meeko/utils/autodock4_atom_types_elements.py'
2024-05-22T21:48:25,583   adding 'meeko/utils/covalent_radius_table.py'
2024-05-22T21:48:25,585   adding 'meeko/utils/geomutils.py'
2024-05-22T21:48:25,587   adding 'meeko/utils/obutils.py'
2024-05-22T21:48:25,588   adding 'meeko/utils/pdbutils.py'
2024-05-22T21:48:25,589   adding 'meeko/utils/rdkitutils.py'
2024-05-22T21:48:25,592   adding 'meeko/utils/utils.py'
2024-05-22T21:48:25,593   adding 'meeko/utils/van_der_waals_radius_table.py'
2024-05-22T21:48:25,598   adding 'meeko-0.5.1.dist-info/LICENSE'
2024-05-22T21:48:25,600   adding 'meeko-0.5.1.dist-info/METADATA'
2024-05-22T21:48:25,602   adding 'meeko-0.5.1.dist-info/WHEEL'
2024-05-22T21:48:25,603   adding 'meeko-0.5.1.dist-info/entry_points.txt'
2024-05-22T21:48:25,604   adding 'meeko-0.5.1.dist-info/top_level.txt'
2024-05-22T21:48:25,605   adding 'meeko-0.5.1.dist-info/RECORD'
2024-05-22T21:48:25,610   removing build/bdist.linux-armv7l/wheel
2024-05-22T21:48:25,749   Building wheel for meeko (setup.py): finished with status 'done'
2024-05-22T21:48:25,753   Created wheel for meeko: filename=meeko-0.5.1-py3-none-any.whl size=129961 sha256=e307d2724fcb8af5b3fa3876d01c4499449da199af949157757b1f1a22d34b06
2024-05-22T21:48:25,754   Stored in directory: /tmp/pip-ephem-wheel-cache-mucv61ii/wheels/e5/87/28/51019dfa18a7fad3160d241a347d86382a0434f1f55bb52696
2024-05-22T21:48:25,769 Successfully built meeko
2024-05-22T21:48:25,777 Removed build tracker: '/tmp/pip-build-tracker-of83roey'