2024-05-23T09:33:02,401 Created temporary directory: /tmp/pip-build-tracker-mmlj8ud8 2024-05-23T09:33:02,402 Initialized build tracking at /tmp/pip-build-tracker-mmlj8ud8 2024-05-23T09:33:02,403 Created build tracker: /tmp/pip-build-tracker-mmlj8ud8 2024-05-23T09:33:02,403 Entered build tracker: /tmp/pip-build-tracker-mmlj8ud8 2024-05-23T09:33:02,404 Created temporary directory: /tmp/pip-wheel-3isxe4pj 2024-05-23T09:33:02,407 Created temporary directory: /tmp/pip-ephem-wheel-cache-1j9q3wvm 2024-05-23T09:33:02,429 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2024-05-23T09:33:02,432 2 location(s) to search for versions of funvip: 2024-05-23T09:33:02,432 * https://pypi.org/simple/funvip/ 2024-05-23T09:33:02,432 * https://www.piwheels.org/simple/funvip/ 2024-05-23T09:33:02,433 Fetching project page and analyzing links: https://pypi.org/simple/funvip/ 2024-05-23T09:33:02,433 Getting page https://pypi.org/simple/funvip/ 2024-05-23T09:33:02,435 Found index url https://pypi.org/simple/ 2024-05-23T09:33:02,651 Fetched page https://pypi.org/simple/funvip/ as application/vnd.pypi.simple.v1+json 2024-05-23T09:33:02,654 Skipping link: No binaries permitted for funvip: https://files.pythonhosted.org/packages/a0/b5/0d65eb17b155c93a7022978aa4521fa29d234a099409863a5b08a8e7e122/FunVIP-0.3.20-py3-none-any.whl (from https://pypi.org/simple/funvip/) (requires-python:<3.13,>3.8) 2024-05-23T09:33:02,655 Found link https://files.pythonhosted.org/packages/9b/df/34c36f5642250c040b8ef6fd2f6c11699fe52dca76ef2697e566a4101185/funvip-0.3.20.tar.gz (from https://pypi.org/simple/funvip/) (requires-python:<3.13,>3.8), version: 0.3.20 2024-05-23T09:33:02,655 Skipping link: No binaries permitted for funvip: https://files.pythonhosted.org/packages/fe/66/8319c3a6cd421da1f2a7febf8bc5042089d0f7480d31d988b9dc02b348cc/FunVIP-0.3.21-py3-none-any.whl (from https://pypi.org/simple/funvip/) (requires-python:<3.13,>3.8) 2024-05-23T09:33:02,656 Found link https://files.pythonhosted.org/packages/15/a7/1458c95468d22392f0d1f5366422c5e3325b2b73fb00ead5645ce60aefd3/funvip-0.3.21.tar.gz (from https://pypi.org/simple/funvip/) (requires-python:<3.13,>3.8), version: 0.3.21 2024-05-23T09:33:02,657 Skipping link: No binaries permitted for funvip: https://files.pythonhosted.org/packages/09/25/d7edd31afd3b5a9c32fd19315aa55fe62eeedbb6ad8efd581f1197da518e/FunVIP-0.3.22-py3-none-any.whl (from https://pypi.org/simple/funvip/) (requires-python:<3.13,>3.8) 2024-05-23T09:33:02,658 Found link https://files.pythonhosted.org/packages/77/eb/6c02451b239042d60f03c7ed10e91d4c53c4e227d2eb1d49aa8b2246a973/funvip-0.3.22.tar.gz (from https://pypi.org/simple/funvip/) (requires-python:<3.13,>3.8), version: 0.3.22 2024-05-23T09:33:02,658 Skipping link: No binaries permitted for funvip: https://files.pythonhosted.org/packages/0b/b3/c6fe7d14fc8dd1ab7b79c3824e98b5ac7b9a6cc4dc3f5af5040acc7e6982/FunVIP-0.3.22.1-py3-none-any.whl (from https://pypi.org/simple/funvip/) (requires-python:<3.13,>3.8) 2024-05-23T09:33:02,659 Found link https://files.pythonhosted.org/packages/a4/d6/c50c9574e9a58a3b2fb79c9e42d1b46e11aab893e33372d4039e8111980b/funvip-0.3.22.1.tar.gz (from https://pypi.org/simple/funvip/) (requires-python:<3.13,>3.8), version: 0.3.22.1 2024-05-23T09:33:02,660 Skipping link: No binaries permitted for funvip: https://files.pythonhosted.org/packages/92/a9/25c0f9148aad62a1e81b3d5791f16c6527a5acbfb6d07aa5e7f1b4db6f5b/FunVIP-0.3.22.2-py3-none-any.whl (from https://pypi.org/simple/funvip/) (requires-python:<3.13,>3.8) 2024-05-23T09:33:02,661 Found link https://files.pythonhosted.org/packages/16/49/7c7f5db94ce39ed308eb78ce6671abafdd86694fb3a62ff365e528b2cdd1/funvip-0.3.22.2.tar.gz (from https://pypi.org/simple/funvip/) (requires-python:<3.13,>3.8), version: 0.3.22.2 2024-05-23T09:33:02,662 Fetching project page and analyzing links: https://www.piwheels.org/simple/funvip/ 2024-05-23T09:33:02,663 Getting page https://www.piwheels.org/simple/funvip/ 2024-05-23T09:33:02,664 Found index url https://www.piwheels.org/simple/ 2024-05-23T09:33:02,842 Fetched page https://www.piwheels.org/simple/funvip/ as text/html 2024-05-23T09:33:02,844 Skipping link: No binaries permitted for funvip: https://www.piwheels.org/simple/funvip/FunVIP-0.3.22.1-py3-none-any.whl#sha256=6464c8044637848420c9213e543ed7b9357ce36d794c79a28b76c20cdb04226f (from https://www.piwheels.org/simple/funvip/) (requires-python:<3.13,>3.8) 2024-05-23T09:33:02,845 Skipping link: No binaries permitted for funvip: https://www.piwheels.org/simple/funvip/FunVIP-0.3.22-py3-none-any.whl#sha256=dd2db50f85481b3ce82217522dd0cf0afb20263cc65856f59e25fce5d1ce09d1 (from https://www.piwheels.org/simple/funvip/) (requires-python:<3.13,>3.8) 2024-05-23T09:33:02,846 Skipping link: No binaries permitted for funvip: https://www.piwheels.org/simple/funvip/FunVIP-0.3.21-py3-none-any.whl#sha256=e1863d6683eb41c991cce86262ef477d12ad652320dfb6fa0f5b9d184d7c42c6 (from https://www.piwheels.org/simple/funvip/) (requires-python:<3.13,>3.8) 2024-05-23T09:33:02,846 Skipping link: No binaries permitted for funvip: https://www.piwheels.org/simple/funvip/FunVIP-0.3.20-py3-none-any.whl#sha256=c93795ba7644b586c23cea4f5a6c421915b36ff5f5be700ee1a37d7857f03e3b (from https://www.piwheels.org/simple/funvip/) (requires-python:<3.13,>3.8) 2024-05-23T09:33:02,846 Skipping link: not a file: https://www.piwheels.org/simple/funvip/ 2024-05-23T09:33:02,847 Skipping link: not a file: https://pypi.org/simple/funvip/ 2024-05-23T09:33:02,867 Given no hashes to check 1 links for project 'funvip': discarding no candidates 2024-05-23T09:33:02,887 Collecting funvip==0.3.22.2 2024-05-23T09:33:02,889 Created temporary directory: /tmp/pip-unpack-hhi38zcv 2024-05-23T09:33:03,108 Downloading funvip-0.3.22.2.tar.gz (59.5 MB) 2024-05-23T09:33:16,383 Added funvip==0.3.22.2 from https://files.pythonhosted.org/packages/16/49/7c7f5db94ce39ed308eb78ce6671abafdd86694fb3a62ff365e528b2cdd1/funvip-0.3.22.2.tar.gz to build tracker '/tmp/pip-build-tracker-mmlj8ud8' 2024-05-23T09:33:16,389 Created temporary directory: /tmp/pip-build-env-1eowg1qp 2024-05-23T09:33:16,393 Installing build dependencies: started 2024-05-23T09:33:16,394 Running command pip subprocess to install build dependencies 2024-05-23T09:33:17,527 Using pip 24.0 from /home/piwheels/.local/lib/python3.11/site-packages/pip (python 3.11) 2024-05-23T09:33:18,037 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2024-05-23T09:33:19,708 Collecting setuptools 2024-05-23T09:33:19,813 Using cached https://www.piwheels.org/simple/setuptools/setuptools-70.0.0-py3-none-any.whl (863 kB) 2024-05-23T09:33:20,008 Collecting setuptools-ext 2024-05-23T09:33:20,036 Using cached https://www.piwheels.org/simple/setuptools-ext/setuptools_ext-0.9-py3-none-any.whl (7.2 kB) 2024-05-23T09:33:20,229 Collecting wheel 2024-05-23T09:33:20,243 Using cached https://www.piwheels.org/simple/wheel/wheel-0.43.0-py3-none-any.whl (65 kB) 2024-05-23T09:33:23,212 Installing collected packages: wheel, setuptools, setuptools-ext 2024-05-23T09:33:23,435 Creating /tmp/pip-build-env-1eowg1qp/overlay/local/bin 2024-05-23T09:33:23,437 changing mode of /tmp/pip-build-env-1eowg1qp/overlay/local/bin/wheel to 755 2024-05-23T09:33:25,871 Successfully installed setuptools-70.0.0 setuptools-ext-0.9 wheel-0.43.0 2024-05-23T09:33:26,350 Installing build dependencies: finished with status 'done' 2024-05-23T09:33:26,353 Getting requirements to build wheel: started 2024-05-23T09:33:26,355 Running command Getting requirements to build wheel 2024-05-23T09:33:27,206 running egg_info 2024-05-23T09:33:27,210 writing FunVIP.egg-info/PKG-INFO 2024-05-23T09:33:27,213 writing dependency_links to FunVIP.egg-info/dependency_links.txt 2024-05-23T09:33:27,215 writing entry points to FunVIP.egg-info/entry_points.txt 2024-05-23T09:33:27,218 writing requirements to FunVIP.egg-info/requires.txt 2024-05-23T09:33:27,219 writing top-level names to FunVIP.egg-info/top_level.txt 2024-05-23T09:33:27,245 reading manifest file 'FunVIP.egg-info/SOURCES.txt' 2024-05-23T09:33:27,259 reading manifest template 'MANIFEST.in' 2024-05-23T09:33:27,344 adding license file 'LICENSE' 2024-05-23T09:33:27,356 writing manifest file 'FunVIP.egg-info/SOURCES.txt' 2024-05-23T09:33:27,476 Getting requirements to build wheel: finished with status 'done' 2024-05-23T09:33:27,490 Created temporary directory: /tmp/pip-modern-metadata-d_zextfz 2024-05-23T09:33:27,492 Preparing metadata (pyproject.toml): started 2024-05-23T09:33:27,493 Running command Preparing metadata (pyproject.toml) 2024-05-23T09:33:28,492 running dist_info 2024-05-23T09:33:28,497 creating /tmp/pip-modern-metadata-d_zextfz/FunVIP.egg-info 2024-05-23T09:33:28,501 writing /tmp/pip-modern-metadata-d_zextfz/FunVIP.egg-info/PKG-INFO 2024-05-23T09:33:28,505 writing dependency_links to /tmp/pip-modern-metadata-d_zextfz/FunVIP.egg-info/dependency_links.txt 2024-05-23T09:33:28,507 writing entry points to /tmp/pip-modern-metadata-d_zextfz/FunVIP.egg-info/entry_points.txt 2024-05-23T09:33:28,510 writing requirements to /tmp/pip-modern-metadata-d_zextfz/FunVIP.egg-info/requires.txt 2024-05-23T09:33:28,511 writing top-level names to /tmp/pip-modern-metadata-d_zextfz/FunVIP.egg-info/top_level.txt 2024-05-23T09:33:28,513 writing manifest file '/tmp/pip-modern-metadata-d_zextfz/FunVIP.egg-info/SOURCES.txt' 2024-05-23T09:33:28,535 reading manifest file '/tmp/pip-modern-metadata-d_zextfz/FunVIP.egg-info/SOURCES.txt' 2024-05-23T09:33:28,537 reading manifest template 'MANIFEST.in' 2024-05-23T09:33:28,618 adding license file 'LICENSE' 2024-05-23T09:33:28,627 writing manifest file '/tmp/pip-modern-metadata-d_zextfz/FunVIP.egg-info/SOURCES.txt' 2024-05-23T09:33:28,629 creating '/tmp/pip-modern-metadata-d_zextfz/FunVIP-0.3.22.2.dist-info' 2024-05-23T09:33:28,785 Preparing metadata (pyproject.toml): finished with status 'done' 2024-05-23T09:33:28,789 Source in /tmp/pip-wheel-3isxe4pj/funvip_f28d3207284045beae11bf3827138d21 has version 0.3.22.2, which satisfies requirement funvip==0.3.22.2 from https://files.pythonhosted.org/packages/16/49/7c7f5db94ce39ed308eb78ce6671abafdd86694fb3a62ff365e528b2cdd1/funvip-0.3.22.2.tar.gz 2024-05-23T09:33:28,790 Removed funvip==0.3.22.2 from https://files.pythonhosted.org/packages/16/49/7c7f5db94ce39ed308eb78ce6671abafdd86694fb3a62ff365e528b2cdd1/funvip-0.3.22.2.tar.gz from build tracker '/tmp/pip-build-tracker-mmlj8ud8' 2024-05-23T09:33:28,795 Created temporary directory: /tmp/pip-unpack-b9ool7pc 2024-05-23T09:33:28,797 Created temporary directory: /tmp/pip-unpack-n78135fr 2024-05-23T09:33:28,822 Building wheels for collected packages: funvip 2024-05-23T09:33:28,826 Created temporary directory: /tmp/pip-wheel-z_6_nck3 2024-05-23T09:33:28,827 Destination directory: /tmp/pip-wheel-z_6_nck3 2024-05-23T09:33:28,829 Building wheel for funvip (pyproject.toml): started 2024-05-23T09:33:28,830 Running command Building wheel for funvip (pyproject.toml) 2024-05-23T09:33:29,818 running bdist_wheel 2024-05-23T09:33:29,835 running build 2024-05-23T09:33:29,836 running build_py 2024-05-23T09:33:29,840 creating build 2024-05-23T09:33:29,841 creating build/lib 2024-05-23T09:33:29,842 creating build/lib/funvip 2024-05-23T09:33:29,843 copying funvip/FunVIP_GUI.py -> build/lib/funvip 2024-05-23T09:33:29,846 copying funvip/__init__.py -> build/lib/funvip 2024-05-23T09:33:29,847 copying funvip/main.py -> build/lib/funvip 2024-05-23T09:33:29,850 creating build/lib/funvip/data 2024-05-23T09:33:29,851 copying funvip/data/__init__.py -> build/lib/funvip/data 2024-05-23T09:33:29,854 creating build/lib/funvip/external 2024-05-23T09:33:29,855 copying funvip/external/__init__.py -> build/lib/funvip/external 2024-05-23T09:33:29,858 creating build/lib/funvip/src 2024-05-23T09:33:29,859 copying funvip/src/version.py -> build/lib/funvip/src 2024-05-23T09:33:29,862 copying funvip/src/ncbi.py -> build/lib/funvip/src 2024-05-23T09:33:29,864 copying funvip/src/cluster.py -> build/lib/funvip/src 2024-05-23T09:33:29,866 copying funvip/src/concatenate.py -> build/lib/funvip/src 2024-05-23T09:33:29,869 copying funvip/src/opt_generator.py -> build/lib/funvip/src 2024-05-23T09:33:29,871 copying funvip/src/validate_option.py -> build/lib/funvip/src 2024-05-23T09:33:29,875 copying funvip/src/validate_input.py -> build/lib/funvip/src 2024-05-23T09:33:29,877 copying funvip/src/validation.py -> build/lib/funvip/src 2024-05-23T09:33:29,879 copying funvip/src/search.py -> build/lib/funvip/src 2024-05-23T09:33:29,881 copying funvip/src/trim.py -> build/lib/funvip/src 2024-05-23T09:33:29,883 copying funvip/src/tool.py -> build/lib/funvip/src 2024-05-23T09:33:29,886 copying funvip/src/reporter.py -> build/lib/funvip/src 2024-05-23T09:33:29,889 copying funvip/src/logger.py -> build/lib/funvip/src 2024-05-23T09:33:29,891 copying funvip/src/__init__.py -> build/lib/funvip/src 2024-05-23T09:33:29,893 copying funvip/src/dataset.py -> build/lib/funvip/src 2024-05-23T09:33:29,895 copying funvip/src/command.py -> build/lib/funvip/src 2024-05-23T09:33:29,898 copying funvip/src/logics.py -> build/lib/funvip/src 2024-05-23T09:33:29,899 copying funvip/src/hasher.py -> build/lib/funvip/src 2024-05-23T09:33:29,901 copying funvip/src/save.py -> build/lib/funvip/src 2024-05-23T09:33:29,904 copying funvip/src/modeltest.py -> build/lib/funvip/src 2024-05-23T09:33:29,906 copying funvip/src/tree.py -> build/lib/funvip/src 2024-05-23T09:33:29,909 copying funvip/src/tree_interpretation.py -> build/lib/funvip/src 2024-05-23T09:33:29,912 copying funvip/src/align.py -> build/lib/funvip/src 2024-05-23T09:33:29,914 copying funvip/src/initialize.py -> build/lib/funvip/src 2024-05-23T09:33:29,916 copying funvip/src/tree_interpretation_pipe.py -> build/lib/funvip/src 2024-05-23T09:33:29,919 copying funvip/src/ext.py -> build/lib/funvip/src 2024-05-23T09:33:29,922 running egg_info 2024-05-23T09:33:29,925 writing FunVIP.egg-info/PKG-INFO 2024-05-23T09:33:29,929 writing dependency_links to FunVIP.egg-info/dependency_links.txt 2024-05-23T09:33:29,930 writing entry points to FunVIP.egg-info/entry_points.txt 2024-05-23T09:33:29,932 writing requirements to FunVIP.egg-info/requires.txt 2024-05-23T09:33:29,933 writing top-level names to FunVIP.egg-info/top_level.txt 2024-05-23T09:33:29,950 reading manifest file 'FunVIP.egg-info/SOURCES.txt' 2024-05-23T09:33:29,956 reading manifest template 'MANIFEST.in' 2024-05-23T09:33:30,048 adding license file 'LICENSE' 2024-05-23T09:33:30,059 writing manifest file 'FunVIP.egg-info/SOURCES.txt' 2024-05-23T09:33:30,062 /tmp/pip-build-env-1eowg1qp/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'funvip.external.BLAST_Windows' is absent from the `packages` configuration. 2024-05-23T09:33:30,062 !! 2024-05-23T09:33:30,064 ******************************************************************************** 2024-05-23T09:33:30,064 ############################ 2024-05-23T09:33:30,065 # Package would be ignored # 2024-05-23T09:33:30,065 ############################ 2024-05-23T09:33:30,066 Python recognizes 'funvip.external.BLAST_Windows' as an importable package[^1], 2024-05-23T09:33:30,067 but it is absent from setuptools' `packages` configuration. 2024-05-23T09:33:30,068 This leads to an ambiguous overall configuration. If you want to distribute this 2024-05-23T09:33:30,068 package, please make sure that 'funvip.external.BLAST_Windows' is explicitly added 2024-05-23T09:33:30,069 to the `packages` configuration field. 2024-05-23T09:33:30,070 Alternatively, you can also rely on setuptools' discovery methods 2024-05-23T09:33:30,070 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-05-23T09:33:30,071 instead of `find_packages(...)`/`find:`). 2024-05-23T09:33:30,072 You can read more about "package discovery" on setuptools documentation page: 2024-05-23T09:33:30,073 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-05-23T09:33:30,074 If you don't want 'funvip.external.BLAST_Windows' to be distributed and are 2024-05-23T09:33:30,075 already explicitly excluding 'funvip.external.BLAST_Windows' via 2024-05-23T09:33:30,076 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-05-23T09:33:30,076 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-05-23T09:33:30,077 combination with a more fine grained `package-data` configuration. 2024-05-23T09:33:30,078 You can read more about "package data files" on setuptools documentation page: 2024-05-23T09:33:30,079 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-05-23T09:33:30,080 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-05-23T09:33:30,080 even if it does not contain any `.py` files. 2024-05-23T09:33:30,081 On the other hand, currently there is no concept of package data 2024-05-23T09:33:30,081 directory, all directories are treated like packages. 2024-05-23T09:33:30,081 ******************************************************************************** 2024-05-23T09:33:30,082 !! 2024-05-23T09:33:30,082 check.warn(importable) 2024-05-23T09:33:30,083 /tmp/pip-build-env-1eowg1qp/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'funvip.external.BLAST_Windows.bin' is absent from the `packages` configuration. 2024-05-23T09:33:30,083 !! 2024-05-23T09:33:30,085 ******************************************************************************** 2024-05-23T09:33:30,085 ############################ 2024-05-23T09:33:30,086 # Package would be ignored # 2024-05-23T09:33:30,086 ############################ 2024-05-23T09:33:30,087 Python recognizes 'funvip.external.BLAST_Windows.bin' as an importable package[^1], 2024-05-23T09:33:30,087 but it is absent from setuptools' `packages` configuration. 2024-05-23T09:33:30,089 This leads to an ambiguous overall configuration. If you want to distribute this 2024-05-23T09:33:30,089 package, please make sure that 'funvip.external.BLAST_Windows.bin' is explicitly added 2024-05-23T09:33:30,090 to the `packages` configuration field. 2024-05-23T09:33:30,091 Alternatively, you can also rely on setuptools' discovery methods 2024-05-23T09:33:30,091 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-05-23T09:33:30,092 instead of `find_packages(...)`/`find:`). 2024-05-23T09:33:30,093 You can read more about "package discovery" on setuptools documentation page: 2024-05-23T09:33:30,094 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-05-23T09:33:30,095 If you don't want 'funvip.external.BLAST_Windows.bin' to be distributed and are 2024-05-23T09:33:30,095 already explicitly excluding 'funvip.external.BLAST_Windows.bin' via 2024-05-23T09:33:30,096 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-05-23T09:33:30,097 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-05-23T09:33:30,097 combination with a more fine grained `package-data` configuration. 2024-05-23T09:33:30,098 You can read more about "package data files" on setuptools documentation page: 2024-05-23T09:33:30,099 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-05-23T09:33:30,101 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-05-23T09:33:30,102 even if it does not contain any `.py` files. 2024-05-23T09:33:30,103 On the other hand, currently there is no concept of package data 2024-05-23T09:33:30,103 directory, all directories are treated like packages. 2024-05-23T09:33:30,104 ******************************************************************************** 2024-05-23T09:33:30,106 !! 2024-05-23T09:33:30,106 check.warn(importable) 2024-05-23T09:33:30,107 /tmp/pip-build-env-1eowg1qp/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'funvip.external.BLAST_Windows.doc' is absent from the `packages` configuration. 2024-05-23T09:33:30,107 !! 2024-05-23T09:33:30,108 ******************************************************************************** 2024-05-23T09:33:30,109 ############################ 2024-05-23T09:33:30,109 # Package would be ignored # 2024-05-23T09:33:30,109 ############################ 2024-05-23T09:33:30,110 Python recognizes 'funvip.external.BLAST_Windows.doc' as an importable package[^1], 2024-05-23T09:33:30,111 but it is absent from setuptools' `packages` configuration. 2024-05-23T09:33:30,111 This leads to an ambiguous overall configuration. If you want to distribute this 2024-05-23T09:33:30,112 package, please make sure that 'funvip.external.BLAST_Windows.doc' is explicitly added 2024-05-23T09:33:30,112 to the `packages` configuration field. 2024-05-23T09:33:30,114 Alternatively, you can also rely on setuptools' discovery methods 2024-05-23T09:33:30,114 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-05-23T09:33:30,115 instead of `find_packages(...)`/`find:`). 2024-05-23T09:33:30,116 You can read more about "package discovery" on setuptools documentation page: 2024-05-23T09:33:30,117 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-05-23T09:33:30,118 If you don't want 'funvip.external.BLAST_Windows.doc' to be distributed and are 2024-05-23T09:33:30,118 already explicitly excluding 'funvip.external.BLAST_Windows.doc' via 2024-05-23T09:33:30,119 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-05-23T09:33:30,119 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-05-23T09:33:30,120 combination with a more fine grained `package-data` configuration. 2024-05-23T09:33:30,121 You can read more about "package data files" on setuptools documentation page: 2024-05-23T09:33:30,122 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-05-23T09:33:30,124 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-05-23T09:33:30,125 even if it does not contain any `.py` files. 2024-05-23T09:33:30,125 On the other hand, currently there is no concept of package data 2024-05-23T09:33:30,126 directory, all directories are treated like packages. 2024-05-23T09:33:30,126 ******************************************************************************** 2024-05-23T09:33:30,127 !! 2024-05-23T09:33:30,128 check.warn(importable) 2024-05-23T09:33:30,129 /tmp/pip-build-env-1eowg1qp/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'funvip.external.FastTree_Windows' is absent from the `packages` configuration. 2024-05-23T09:33:30,129 !! 2024-05-23T09:33:30,130 ******************************************************************************** 2024-05-23T09:33:30,131 ############################ 2024-05-23T09:33:30,131 # Package would be ignored # 2024-05-23T09:33:30,132 ############################ 2024-05-23T09:33:30,133 Python recognizes 'funvip.external.FastTree_Windows' as an importable package[^1], 2024-05-23T09:33:30,133 but it is absent from setuptools' `packages` configuration. 2024-05-23T09:33:30,135 This leads to an ambiguous overall configuration. If you want to distribute this 2024-05-23T09:33:30,135 package, please make sure that 'funvip.external.FastTree_Windows' is explicitly added 2024-05-23T09:33:30,136 to the `packages` configuration field. 2024-05-23T09:33:30,137 Alternatively, you can also rely on setuptools' discovery methods 2024-05-23T09:33:30,137 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-05-23T09:33:30,138 instead of `find_packages(...)`/`find:`). 2024-05-23T09:33:30,139 You can read more about "package discovery" on setuptools documentation page: 2024-05-23T09:33:30,140 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-05-23T09:33:30,141 If you don't want 'funvip.external.FastTree_Windows' to be distributed and are 2024-05-23T09:33:30,141 already explicitly excluding 'funvip.external.FastTree_Windows' via 2024-05-23T09:33:30,142 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-05-23T09:33:30,142 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-05-23T09:33:30,143 combination with a more fine grained `package-data` configuration. 2024-05-23T09:33:30,143 You can read more about "package data files" on setuptools documentation page: 2024-05-23T09:33:30,144 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-05-23T09:33:30,146 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-05-23T09:33:30,146 even if it does not contain any `.py` files. 2024-05-23T09:33:30,147 On the other hand, currently there is no concept of package data 2024-05-23T09:33:30,148 directory, all directories are treated like packages. 2024-05-23T09:33:30,148 ******************************************************************************** 2024-05-23T09:33:30,149 !! 2024-05-23T09:33:30,150 check.warn(importable) 2024-05-23T09:33:30,150 /tmp/pip-build-env-1eowg1qp/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'funvip.external.RAxML_Windows' is absent from the `packages` configuration. 2024-05-23T09:33:30,151 !! 2024-05-23T09:33:30,152 ******************************************************************************** 2024-05-23T09:33:30,153 ############################ 2024-05-23T09:33:30,153 # Package would be ignored # 2024-05-23T09:33:30,154 ############################ 2024-05-23T09:33:30,154 Python recognizes 'funvip.external.RAxML_Windows' as an importable package[^1], 2024-05-23T09:33:30,155 but it is absent from setuptools' `packages` configuration. 2024-05-23T09:33:30,156 This leads to an ambiguous overall configuration. If you want to distribute this 2024-05-23T09:33:30,157 package, please make sure that 'funvip.external.RAxML_Windows' is explicitly added 2024-05-23T09:33:30,157 to the `packages` configuration field. 2024-05-23T09:33:30,158 Alternatively, you can also rely on setuptools' discovery methods 2024-05-23T09:33:30,159 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-05-23T09:33:30,159 instead of `find_packages(...)`/`find:`). 2024-05-23T09:33:30,160 You can read more about "package discovery" on setuptools documentation page: 2024-05-23T09:33:30,162 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-05-23T09:33:30,163 If you don't want 'funvip.external.RAxML_Windows' to be distributed and are 2024-05-23T09:33:30,163 already explicitly excluding 'funvip.external.RAxML_Windows' via 2024-05-23T09:33:30,164 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-05-23T09:33:30,165 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-05-23T09:33:30,165 combination with a more fine grained `package-data` configuration. 2024-05-23T09:33:30,166 You can read more about "package data files" on setuptools documentation page: 2024-05-23T09:33:30,168 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-05-23T09:33:30,169 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-05-23T09:33:30,170 even if it does not contain any `.py` files. 2024-05-23T09:33:30,170 On the other hand, currently there is no concept of package data 2024-05-23T09:33:30,170 directory, all directories are treated like packages. 2024-05-23T09:33:30,171 ******************************************************************************** 2024-05-23T09:33:30,172 !! 2024-05-23T09:33:30,172 check.warn(importable) 2024-05-23T09:33:30,173 /tmp/pip-build-env-1eowg1qp/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'funvip.external.iqtree' is absent from the `packages` configuration. 2024-05-23T09:33:30,173 !! 2024-05-23T09:33:30,174 ******************************************************************************** 2024-05-23T09:33:30,175 ############################ 2024-05-23T09:33:30,175 # Package would be ignored # 2024-05-23T09:33:30,176 ############################ 2024-05-23T09:33:30,176 Python recognizes 'funvip.external.iqtree' as an importable package[^1], 2024-05-23T09:33:30,177 but it is absent from setuptools' `packages` configuration. 2024-05-23T09:33:30,178 This leads to an ambiguous overall configuration. If you want to distribute this 2024-05-23T09:33:30,178 package, please make sure that 'funvip.external.iqtree' is explicitly added 2024-05-23T09:33:30,179 to the `packages` configuration field. 2024-05-23T09:33:30,180 Alternatively, you can also rely on setuptools' discovery methods 2024-05-23T09:33:30,180 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-05-23T09:33:30,181 instead of `find_packages(...)`/`find:`). 2024-05-23T09:33:30,182 You can read more about "package discovery" on setuptools documentation page: 2024-05-23T09:33:30,183 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-05-23T09:33:30,184 If you don't want 'funvip.external.iqtree' to be distributed and are 2024-05-23T09:33:30,185 already explicitly excluding 'funvip.external.iqtree' via 2024-05-23T09:33:30,185 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-05-23T09:33:30,186 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-05-23T09:33:30,187 combination with a more fine grained `package-data` configuration. 2024-05-23T09:33:30,188 You can read more about "package data files" on setuptools documentation page: 2024-05-23T09:33:30,189 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-05-23T09:33:30,193 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-05-23T09:33:30,194 even if it does not contain any `.py` files. 2024-05-23T09:33:30,195 On the other hand, currently there is no concept of package data 2024-05-23T09:33:30,195 directory, all directories are treated like packages. 2024-05-23T09:33:30,197 ******************************************************************************** 2024-05-23T09:33:30,199 !! 2024-05-23T09:33:30,200 check.warn(importable) 2024-05-23T09:33:30,201 /tmp/pip-build-env-1eowg1qp/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'funvip.external.iqtree.bin' is absent from the `packages` configuration. 2024-05-23T09:33:30,202 !! 2024-05-23T09:33:30,204 ******************************************************************************** 2024-05-23T09:33:30,204 ############################ 2024-05-23T09:33:30,205 # Package would be ignored # 2024-05-23T09:33:30,207 ############################ 2024-05-23T09:33:30,207 Python recognizes 'funvip.external.iqtree.bin' as an importable package[^1], 2024-05-23T09:33:30,209 but it is absent from setuptools' `packages` configuration. 2024-05-23T09:33:30,210 This leads to an ambiguous overall configuration. If you want to distribute this 2024-05-23T09:33:30,211 package, please make sure that 'funvip.external.iqtree.bin' is explicitly added 2024-05-23T09:33:30,211 to the `packages` configuration field. 2024-05-23T09:33:30,212 Alternatively, you can also rely on setuptools' discovery methods 2024-05-23T09:33:30,213 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-05-23T09:33:30,213 instead of `find_packages(...)`/`find:`). 2024-05-23T09:33:30,214 You can read more about "package discovery" on setuptools documentation page: 2024-05-23T09:33:30,215 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-05-23T09:33:30,216 If you don't want 'funvip.external.iqtree.bin' to be distributed and are 2024-05-23T09:33:30,217 already explicitly excluding 'funvip.external.iqtree.bin' via 2024-05-23T09:33:30,218 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-05-23T09:33:30,218 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-05-23T09:33:30,219 combination with a more fine grained `package-data` configuration. 2024-05-23T09:33:30,221 You can read more about "package data files" on setuptools documentation page: 2024-05-23T09:33:30,222 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-05-23T09:33:30,270 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-05-23T09:33:30,285 even if it does not contain any `.py` files. 2024-05-23T09:33:30,295 On the other hand, currently there is no concept of package data 2024-05-23T09:33:30,310 directory, all directories are treated like packages. 2024-05-23T09:33:30,331 ******************************************************************************** 2024-05-23T09:33:30,370 !! 2024-05-23T09:33:30,407 check.warn(importable) 2024-05-23T09:33:30,455 /tmp/pip-build-env-1eowg1qp/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'funvip.external.mmseqs_Windows' is absent from the `packages` configuration. 2024-05-23T09:33:30,472 !! 2024-05-23T09:33:30,500 ******************************************************************************** 2024-05-23T09:33:30,517 ############################ 2024-05-23T09:33:30,531 # Package would be ignored # 2024-05-23T09:33:30,533 ############################ 2024-05-23T09:33:30,533 Python recognizes 'funvip.external.mmseqs_Windows' as an importable package[^1], 2024-05-23T09:33:30,534 but it is absent from setuptools' `packages` configuration. 2024-05-23T09:33:30,535 This leads to an ambiguous overall configuration. If you want to distribute this 2024-05-23T09:33:30,535 package, please make sure that 'funvip.external.mmseqs_Windows' is explicitly added 2024-05-23T09:33:30,536 to the `packages` configuration field. 2024-05-23T09:33:30,537 Alternatively, you can also rely on setuptools' discovery methods 2024-05-23T09:33:30,537 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-05-23T09:33:30,538 instead of `find_packages(...)`/`find:`). 2024-05-23T09:33:30,539 You can read more about "package discovery" on setuptools documentation page: 2024-05-23T09:33:30,540 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-05-23T09:33:30,541 If you don't want 'funvip.external.mmseqs_Windows' to be distributed and are 2024-05-23T09:33:30,542 already explicitly excluding 'funvip.external.mmseqs_Windows' via 2024-05-23T09:33:30,542 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-05-23T09:33:30,543 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-05-23T09:33:30,543 combination with a more fine grained `package-data` configuration. 2024-05-23T09:33:30,544 You can read more about "package data files" on setuptools documentation page: 2024-05-23T09:33:30,545 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-05-23T09:33:30,546 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-05-23T09:33:30,547 even if it does not contain any `.py` files. 2024-05-23T09:33:30,547 On the other hand, currently there is no concept of package data 2024-05-23T09:33:30,548 directory, all directories are treated like packages. 2024-05-23T09:33:30,548 ******************************************************************************** 2024-05-23T09:33:30,549 !! 2024-05-23T09:33:30,550 check.warn(importable) 2024-05-23T09:33:30,550 /tmp/pip-build-env-1eowg1qp/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'funvip.external.mmseqs_Windows.bin' is absent from the `packages` configuration. 2024-05-23T09:33:30,551 !! 2024-05-23T09:33:30,552 ******************************************************************************** 2024-05-23T09:33:30,552 ############################ 2024-05-23T09:33:30,553 # Package would be ignored # 2024-05-23T09:33:30,553 ############################ 2024-05-23T09:33:30,554 Python recognizes 'funvip.external.mmseqs_Windows.bin' as an importable package[^1], 2024-05-23T09:33:30,555 but it is absent from setuptools' `packages` configuration. 2024-05-23T09:33:30,556 This leads to an ambiguous overall configuration. If you want to distribute this 2024-05-23T09:33:30,556 package, please make sure that 'funvip.external.mmseqs_Windows.bin' is explicitly added 2024-05-23T09:33:30,557 to the `packages` configuration field. 2024-05-23T09:33:30,558 Alternatively, you can also rely on setuptools' discovery methods 2024-05-23T09:33:30,558 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-05-23T09:33:30,559 instead of `find_packages(...)`/`find:`). 2024-05-23T09:33:30,560 You can read more about "package discovery" on setuptools documentation page: 2024-05-23T09:33:30,561 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-05-23T09:33:30,562 If you don't want 'funvip.external.mmseqs_Windows.bin' to be distributed and are 2024-05-23T09:33:30,563 already explicitly excluding 'funvip.external.mmseqs_Windows.bin' via 2024-05-23T09:33:30,563 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-05-23T09:33:30,564 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-05-23T09:33:30,564 combination with a more fine grained `package-data` configuration. 2024-05-23T09:33:30,565 You can read more about "package data files" on setuptools documentation page: 2024-05-23T09:33:30,566 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-05-23T09:33:30,568 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-05-23T09:33:30,569 even if it does not contain any `.py` files. 2024-05-23T09:33:30,569 On the other hand, currently there is no concept of package data 2024-05-23T09:33:30,570 directory, all directories are treated like packages. 2024-05-23T09:33:30,570 ******************************************************************************** 2024-05-23T09:33:30,572 !! 2024-05-23T09:33:30,572 check.warn(importable) 2024-05-23T09:33:30,574 /tmp/pip-build-env-1eowg1qp/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'funvip.external.mmseqs_Windows.examples' is absent from the `packages` configuration. 2024-05-23T09:33:30,574 !! 2024-05-23T09:33:30,575 ******************************************************************************** 2024-05-23T09:33:30,576 ############################ 2024-05-23T09:33:30,576 # Package would be ignored # 2024-05-23T09:33:30,577 ############################ 2024-05-23T09:33:30,577 Python recognizes 'funvip.external.mmseqs_Windows.examples' as an importable package[^1], 2024-05-23T09:33:30,578 but it is absent from setuptools' `packages` configuration. 2024-05-23T09:33:30,588 This leads to an ambiguous overall configuration. If you want to distribute this 2024-05-23T09:33:30,589 package, please make sure that 'funvip.external.mmseqs_Windows.examples' is explicitly added 2024-05-23T09:33:30,589 to the `packages` configuration field. 2024-05-23T09:33:30,590 Alternatively, you can also rely on setuptools' discovery methods 2024-05-23T09:33:30,591 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-05-23T09:33:30,591 instead of `find_packages(...)`/`find:`). 2024-05-23T09:33:30,592 You can read more about "package discovery" on setuptools documentation page: 2024-05-23T09:33:30,593 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-05-23T09:33:30,594 If you don't want 'funvip.external.mmseqs_Windows.examples' to be distributed and are 2024-05-23T09:33:30,594 already explicitly excluding 'funvip.external.mmseqs_Windows.examples' via 2024-05-23T09:33:30,595 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-05-23T09:33:30,595 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-05-23T09:33:30,596 combination with a more fine grained `package-data` configuration. 2024-05-23T09:33:30,597 You can read more about "package data files" on setuptools documentation page: 2024-05-23T09:33:30,599 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-05-23T09:33:30,601 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-05-23T09:33:30,601 even if it does not contain any `.py` files. 2024-05-23T09:33:30,602 On the other hand, currently there is no concept of package data 2024-05-23T09:33:30,603 directory, all directories are treated like packages. 2024-05-23T09:33:30,603 ******************************************************************************** 2024-05-23T09:33:30,605 !! 2024-05-23T09:33:30,605 check.warn(importable) 2024-05-23T09:33:30,606 /tmp/pip-build-env-1eowg1qp/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'funvip.external.mmseqs_Windows.matrices' is absent from the `packages` configuration. 2024-05-23T09:33:30,607 !! 2024-05-23T09:33:30,608 ******************************************************************************** 2024-05-23T09:33:30,609 ############################ 2024-05-23T09:33:30,609 # Package would be ignored # 2024-05-23T09:33:30,610 ############################ 2024-05-23T09:33:30,610 Python recognizes 'funvip.external.mmseqs_Windows.matrices' as an importable package[^1], 2024-05-23T09:33:30,611 but it is absent from setuptools' `packages` configuration. 2024-05-23T09:33:30,613 This leads to an ambiguous overall configuration. If you want to distribute this 2024-05-23T09:33:30,613 package, please make sure that 'funvip.external.mmseqs_Windows.matrices' is explicitly added 2024-05-23T09:33:30,614 to the `packages` configuration field. 2024-05-23T09:33:30,616 Alternatively, you can also rely on setuptools' discovery methods 2024-05-23T09:33:30,617 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-05-23T09:33:30,617 instead of `find_packages(...)`/`find:`). 2024-05-23T09:33:30,618 You can read more about "package discovery" on setuptools documentation page: 2024-05-23T09:33:30,619 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-05-23T09:33:30,620 If you don't want 'funvip.external.mmseqs_Windows.matrices' to be distributed and are 2024-05-23T09:33:30,621 already explicitly excluding 'funvip.external.mmseqs_Windows.matrices' via 2024-05-23T09:33:30,621 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-05-23T09:33:30,622 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-05-23T09:33:30,622 combination with a more fine grained `package-data` configuration. 2024-05-23T09:33:30,623 You can read more about "package data files" on setuptools documentation page: 2024-05-23T09:33:30,624 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-05-23T09:33:30,626 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-05-23T09:33:30,626 even if it does not contain any `.py` files. 2024-05-23T09:33:30,627 On the other hand, currently there is no concept of package data 2024-05-23T09:33:30,627 directory, all directories are treated like packages. 2024-05-23T09:33:30,628 ******************************************************************************** 2024-05-23T09:33:30,629 !! 2024-05-23T09:33:30,630 check.warn(importable) 2024-05-23T09:33:30,630 /tmp/pip-build-env-1eowg1qp/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'funvip.external.mmseqs_Windows.util' is absent from the `packages` configuration. 2024-05-23T09:33:30,631 !! 2024-05-23T09:33:30,632 ******************************************************************************** 2024-05-23T09:33:30,633 ############################ 2024-05-23T09:33:30,634 # Package would be ignored # 2024-05-23T09:33:30,634 ############################ 2024-05-23T09:33:30,635 Python recognizes 'funvip.external.mmseqs_Windows.util' as an importable package[^1], 2024-05-23T09:33:30,636 but it is absent from setuptools' `packages` configuration. 2024-05-23T09:33:30,637 This leads to an ambiguous overall configuration. If you want to distribute this 2024-05-23T09:33:30,638 package, please make sure that 'funvip.external.mmseqs_Windows.util' is explicitly added 2024-05-23T09:33:30,639 to the `packages` configuration field. 2024-05-23T09:33:30,640 Alternatively, you can also rely on setuptools' discovery methods 2024-05-23T09:33:30,641 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-05-23T09:33:30,641 instead of `find_packages(...)`/`find:`). 2024-05-23T09:33:30,643 You can read more about "package discovery" on setuptools documentation page: 2024-05-23T09:33:30,644 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-05-23T09:33:30,645 If you don't want 'funvip.external.mmseqs_Windows.util' to be distributed and are 2024-05-23T09:33:30,646 already explicitly excluding 'funvip.external.mmseqs_Windows.util' via 2024-05-23T09:33:30,646 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-05-23T09:33:30,647 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-05-23T09:33:30,648 combination with a more fine grained `package-data` configuration. 2024-05-23T09:33:30,649 You can read more about "package data files" on setuptools documentation page: 2024-05-23T09:33:30,650 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-05-23T09:33:30,651 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-05-23T09:33:30,652 even if it does not contain any `.py` files. 2024-05-23T09:33:30,652 On the other hand, currently there is no concept of package data 2024-05-23T09:33:30,653 directory, all directories are treated like packages. 2024-05-23T09:33:30,653 ******************************************************************************** 2024-05-23T09:33:30,654 !! 2024-05-23T09:33:30,655 check.warn(importable) 2024-05-23T09:33:30,655 /tmp/pip-build-env-1eowg1qp/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'funvip.src.__pycache__' is absent from the `packages` configuration. 2024-05-23T09:33:30,655 !! 2024-05-23T09:33:30,656 ******************************************************************************** 2024-05-23T09:33:30,657 ############################ 2024-05-23T09:33:30,657 # Package would be ignored # 2024-05-23T09:33:30,658 ############################ 2024-05-23T09:33:30,669 Python recognizes 'funvip.src.__pycache__' as an importable package[^1], 2024-05-23T09:33:30,673 but it is absent from setuptools' `packages` configuration. 2024-05-23T09:33:30,678 This leads to an ambiguous overall configuration. If you want to distribute this 2024-05-23T09:33:30,684 package, please make sure that 'funvip.src.__pycache__' is explicitly added 2024-05-23T09:33:30,702 to the `packages` configuration field. 2024-05-23T09:33:30,728 Alternatively, you can also rely on setuptools' discovery methods 2024-05-23T09:33:30,758 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-05-23T09:33:30,779 instead of `find_packages(...)`/`find:`). 2024-05-23T09:33:30,827 You can read more about "package discovery" on setuptools documentation page: 2024-05-23T09:33:30,859 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-05-23T09:33:30,874 If you don't want 'funvip.src.__pycache__' to be distributed and are 2024-05-23T09:33:30,878 already explicitly excluding 'funvip.src.__pycache__' via 2024-05-23T09:33:30,879 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-05-23T09:33:30,879 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-05-23T09:33:30,880 combination with a more fine grained `package-data` configuration. 2024-05-23T09:33:30,881 You can read more about "package data files" on setuptools documentation page: 2024-05-23T09:33:30,882 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-05-23T09:33:30,884 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-05-23T09:33:30,884 even if it does not contain any `.py` files. 2024-05-23T09:33:30,885 On the other hand, currently there is no concept of package data 2024-05-23T09:33:30,885 directory, all directories are treated like packages. 2024-05-23T09:33:30,886 ******************************************************************************** 2024-05-23T09:33:30,887 !! 2024-05-23T09:33:30,887 check.warn(importable) 2024-05-23T09:33:30,888 /tmp/pip-build-env-1eowg1qp/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'funvip.src.templates' is absent from the `packages` configuration. 2024-05-23T09:33:30,888 !! 2024-05-23T09:33:30,889 ******************************************************************************** 2024-05-23T09:33:30,890 ############################ 2024-05-23T09:33:30,891 # Package would be ignored # 2024-05-23T09:33:30,891 ############################ 2024-05-23T09:33:30,892 Python recognizes 'funvip.src.templates' as an importable package[^1], 2024-05-23T09:33:30,893 but it is absent from setuptools' `packages` configuration. 2024-05-23T09:33:30,896 This leads to an ambiguous overall configuration. If you want to distribute this 2024-05-23T09:33:30,896 package, please make sure that 'funvip.src.templates' is explicitly added 2024-05-23T09:33:30,897 to the `packages` configuration field. 2024-05-23T09:33:30,898 Alternatively, you can also rely on setuptools' discovery methods 2024-05-23T09:33:30,899 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-05-23T09:33:30,899 instead of `find_packages(...)`/`find:`). 2024-05-23T09:33:30,901 You can read more about "package discovery" on setuptools documentation page: 2024-05-23T09:33:30,902 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-05-23T09:33:30,903 If you don't want 'funvip.src.templates' to be distributed and are 2024-05-23T09:33:30,904 already explicitly excluding 'funvip.src.templates' via 2024-05-23T09:33:30,904 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-05-23T09:33:30,905 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-05-23T09:33:30,905 combination with a more fine grained `package-data` configuration. 2024-05-23T09:33:30,906 You can read more about "package data files" on setuptools documentation page: 2024-05-23T09:33:30,907 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-05-23T09:33:30,910 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-05-23T09:33:30,910 even if it does not contain any `.py` files. 2024-05-23T09:33:30,911 On the other hand, currently there is no concept of package data 2024-05-23T09:33:30,912 directory, all directories are treated like packages. 2024-05-23T09:33:30,912 ******************************************************************************** 2024-05-23T09:33:30,914 !! 2024-05-23T09:33:30,914 check.warn(importable) 2024-05-23T09:33:30,915 /tmp/pip-build-env-1eowg1qp/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'funvip.test_dataset.penicillium' is absent from the `packages` configuration. 2024-05-23T09:33:30,916 !! 2024-05-23T09:33:30,917 ******************************************************************************** 2024-05-23T09:33:30,917 ############################ 2024-05-23T09:33:30,918 # Package would be ignored # 2024-05-23T09:33:30,919 ############################ 2024-05-23T09:33:30,919 Python recognizes 'funvip.test_dataset.penicillium' as an importable package[^1], 2024-05-23T09:33:30,920 but it is absent from setuptools' `packages` configuration. 2024-05-23T09:33:30,921 This leads to an ambiguous overall configuration. If you want to distribute this 2024-05-23T09:33:30,921 package, please make sure that 'funvip.test_dataset.penicillium' is explicitly added 2024-05-23T09:33:30,922 to the `packages` configuration field. 2024-05-23T09:33:30,923 Alternatively, you can also rely on setuptools' discovery methods 2024-05-23T09:33:30,923 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-05-23T09:33:30,924 instead of `find_packages(...)`/`find:`). 2024-05-23T09:33:30,925 You can read more about "package discovery" on setuptools documentation page: 2024-05-23T09:33:30,926 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-05-23T09:33:30,927 If you don't want 'funvip.test_dataset.penicillium' to be distributed and are 2024-05-23T09:33:30,928 already explicitly excluding 'funvip.test_dataset.penicillium' via 2024-05-23T09:33:30,929 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-05-23T09:33:30,930 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-05-23T09:33:30,930 combination with a more fine grained `package-data` configuration. 2024-05-23T09:33:30,931 You can read more about "package data files" on setuptools documentation page: 2024-05-23T09:33:30,932 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-05-23T09:33:30,933 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-05-23T09:33:30,933 even if it does not contain any `.py` files. 2024-05-23T09:33:30,934 On the other hand, currently there is no concept of package data 2024-05-23T09:33:30,934 directory, all directories are treated like packages. 2024-05-23T09:33:30,935 ******************************************************************************** 2024-05-23T09:33:30,936 !! 2024-05-23T09:33:30,936 check.warn(importable) 2024-05-23T09:33:30,937 /tmp/pip-build-env-1eowg1qp/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'funvip.test_dataset.penicillium.DB' is absent from the `packages` configuration. 2024-05-23T09:33:30,937 !! 2024-05-23T09:33:30,938 ******************************************************************************** 2024-05-23T09:33:30,939 ############################ 2024-05-23T09:33:30,939 # Package would be ignored # 2024-05-23T09:33:30,940 ############################ 2024-05-23T09:33:30,940 Python recognizes 'funvip.test_dataset.penicillium.DB' as an importable package[^1], 2024-05-23T09:33:30,941 but it is absent from setuptools' `packages` configuration. 2024-05-23T09:33:30,942 This leads to an ambiguous overall configuration. If you want to distribute this 2024-05-23T09:33:30,943 package, please make sure that 'funvip.test_dataset.penicillium.DB' is explicitly added 2024-05-23T09:33:30,943 to the `packages` configuration field. 2024-05-23T09:33:30,945 Alternatively, you can also rely on setuptools' discovery methods 2024-05-23T09:33:30,945 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-05-23T09:33:30,946 instead of `find_packages(...)`/`find:`). 2024-05-23T09:33:30,947 You can read more about "package discovery" on setuptools documentation page: 2024-05-23T09:33:30,948 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-05-23T09:33:30,949 If you don't want 'funvip.test_dataset.penicillium.DB' to be distributed and are 2024-05-23T09:33:30,950 already explicitly excluding 'funvip.test_dataset.penicillium.DB' via 2024-05-23T09:33:30,950 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-05-23T09:33:30,951 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-05-23T09:33:30,951 combination with a more fine grained `package-data` configuration. 2024-05-23T09:33:30,953 You can read more about "package data files" on setuptools documentation page: 2024-05-23T09:33:30,966 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-05-23T09:33:31,026 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-05-23T09:33:31,047 even if it does not contain any `.py` files. 2024-05-23T09:33:31,065 On the other hand, currently there is no concept of package data 2024-05-23T09:33:31,085 directory, all directories are treated like packages. 2024-05-23T09:33:31,106 ******************************************************************************** 2024-05-23T09:33:31,116 !! 2024-05-23T09:33:31,117 check.warn(importable) 2024-05-23T09:33:31,118 /tmp/pip-build-env-1eowg1qp/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'funvip.test_dataset.penicillium.Query' is absent from the `packages` configuration. 2024-05-23T09:33:31,118 !! 2024-05-23T09:33:31,119 ******************************************************************************** 2024-05-23T09:33:31,120 ############################ 2024-05-23T09:33:31,120 # Package would be ignored # 2024-05-23T09:33:31,120 ############################ 2024-05-23T09:33:31,121 Python recognizes 'funvip.test_dataset.penicillium.Query' as an importable package[^1], 2024-05-23T09:33:31,121 but it is absent from setuptools' `packages` configuration. 2024-05-23T09:33:31,122 This leads to an ambiguous overall configuration. If you want to distribute this 2024-05-23T09:33:31,122 package, please make sure that 'funvip.test_dataset.penicillium.Query' is explicitly added 2024-05-23T09:33:31,123 to the `packages` configuration field. 2024-05-23T09:33:31,125 Alternatively, you can also rely on setuptools' discovery methods 2024-05-23T09:33:31,126 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-05-23T09:33:31,126 instead of `find_packages(...)`/`find:`). 2024-05-23T09:33:31,127 You can read more about "package discovery" on setuptools documentation page: 2024-05-23T09:33:31,129 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-05-23T09:33:31,130 If you don't want 'funvip.test_dataset.penicillium.Query' to be distributed and are 2024-05-23T09:33:31,130 already explicitly excluding 'funvip.test_dataset.penicillium.Query' via 2024-05-23T09:33:31,131 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-05-23T09:33:31,131 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-05-23T09:33:31,132 combination with a more fine grained `package-data` configuration. 2024-05-23T09:33:31,133 You can read more about "package data files" on setuptools documentation page: 2024-05-23T09:33:31,134 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-05-23T09:33:31,135 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-05-23T09:33:31,138 even if it does not contain any `.py` files. 2024-05-23T09:33:31,140 On the other hand, currently there is no concept of package data 2024-05-23T09:33:31,141 directory, all directories are treated like packages. 2024-05-23T09:33:31,142 ******************************************************************************** 2024-05-23T09:33:31,142 !! 2024-05-23T09:33:31,143 check.warn(importable) 2024-05-23T09:33:31,143 /tmp/pip-build-env-1eowg1qp/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'funvip.test_dataset.terrei' is absent from the `packages` configuration. 2024-05-23T09:33:31,144 !! 2024-05-23T09:33:31,145 ******************************************************************************** 2024-05-23T09:33:31,145 ############################ 2024-05-23T09:33:31,146 # Package would be ignored # 2024-05-23T09:33:31,146 ############################ 2024-05-23T09:33:31,147 Python recognizes 'funvip.test_dataset.terrei' as an importable package[^1], 2024-05-23T09:33:31,150 but it is absent from setuptools' `packages` configuration. 2024-05-23T09:33:31,151 This leads to an ambiguous overall configuration. If you want to distribute this 2024-05-23T09:33:31,151 package, please make sure that 'funvip.test_dataset.terrei' is explicitly added 2024-05-23T09:33:31,152 to the `packages` configuration field. 2024-05-23T09:33:31,153 Alternatively, you can also rely on setuptools' discovery methods 2024-05-23T09:33:31,154 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-05-23T09:33:31,154 instead of `find_packages(...)`/`find:`). 2024-05-23T09:33:31,155 You can read more about "package discovery" on setuptools documentation page: 2024-05-23T09:33:31,156 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-05-23T09:33:31,157 If you don't want 'funvip.test_dataset.terrei' to be distributed and are 2024-05-23T09:33:31,157 already explicitly excluding 'funvip.test_dataset.terrei' via 2024-05-23T09:33:31,158 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-05-23T09:33:31,158 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-05-23T09:33:31,159 combination with a more fine grained `package-data` configuration. 2024-05-23T09:33:31,160 You can read more about "package data files" on setuptools documentation page: 2024-05-23T09:33:31,161 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-05-23T09:33:31,162 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-05-23T09:33:31,162 even if it does not contain any `.py` files. 2024-05-23T09:33:31,163 On the other hand, currently there is no concept of package data 2024-05-23T09:33:31,163 directory, all directories are treated like packages. 2024-05-23T09:33:31,163 ******************************************************************************** 2024-05-23T09:33:31,164 !! 2024-05-23T09:33:31,165 check.warn(importable) 2024-05-23T09:33:31,165 /tmp/pip-build-env-1eowg1qp/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'funvip.test_dataset.terrei.DB' is absent from the `packages` configuration. 2024-05-23T09:33:31,166 !! 2024-05-23T09:33:31,167 ******************************************************************************** 2024-05-23T09:33:31,167 ############################ 2024-05-23T09:33:31,168 # Package would be ignored # 2024-05-23T09:33:31,168 ############################ 2024-05-23T09:33:31,169 Python recognizes 'funvip.test_dataset.terrei.DB' as an importable package[^1], 2024-05-23T09:33:31,169 but it is absent from setuptools' `packages` configuration. 2024-05-23T09:33:31,170 This leads to an ambiguous overall configuration. If you want to distribute this 2024-05-23T09:33:31,171 package, please make sure that 'funvip.test_dataset.terrei.DB' is explicitly added 2024-05-23T09:33:31,172 to the `packages` configuration field. 2024-05-23T09:33:31,173 Alternatively, you can also rely on setuptools' discovery methods 2024-05-23T09:33:31,173 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-05-23T09:33:31,174 instead of `find_packages(...)`/`find:`). 2024-05-23T09:33:31,175 You can read more about "package discovery" on setuptools documentation page: 2024-05-23T09:33:31,176 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-05-23T09:33:31,177 If you don't want 'funvip.test_dataset.terrei.DB' to be distributed and are 2024-05-23T09:33:31,178 already explicitly excluding 'funvip.test_dataset.terrei.DB' via 2024-05-23T09:33:31,179 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-05-23T09:33:31,179 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-05-23T09:33:31,180 combination with a more fine grained `package-data` configuration. 2024-05-23T09:33:31,181 You can read more about "package data files" on setuptools documentation page: 2024-05-23T09:33:31,182 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-05-23T09:33:31,184 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-05-23T09:33:31,184 even if it does not contain any `.py` files. 2024-05-23T09:33:31,185 On the other hand, currently there is no concept of package data 2024-05-23T09:33:31,185 directory, all directories are treated like packages. 2024-05-23T09:33:31,185 ******************************************************************************** 2024-05-23T09:33:31,186 !! 2024-05-23T09:33:31,187 check.warn(importable) 2024-05-23T09:33:31,187 /tmp/pip-build-env-1eowg1qp/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'funvip.test_dataset.terrei.Query' is absent from the `packages` configuration. 2024-05-23T09:33:31,187 !! 2024-05-23T09:33:31,188 ******************************************************************************** 2024-05-23T09:33:31,189 ############################ 2024-05-23T09:33:31,189 # Package would be ignored # 2024-05-23T09:33:31,190 ############################ 2024-05-23T09:33:31,190 Python recognizes 'funvip.test_dataset.terrei.Query' as an importable package[^1], 2024-05-23T09:33:31,191 but it is absent from setuptools' `packages` configuration. 2024-05-23T09:33:31,192 This leads to an ambiguous overall configuration. If you want to distribute this 2024-05-23T09:33:31,193 package, please make sure that 'funvip.test_dataset.terrei.Query' is explicitly added 2024-05-23T09:33:31,193 to the `packages` configuration field. 2024-05-23T09:33:31,194 Alternatively, you can also rely on setuptools' discovery methods 2024-05-23T09:33:31,195 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-05-23T09:33:31,195 instead of `find_packages(...)`/`find:`). 2024-05-23T09:33:31,197 You can read more about "package discovery" on setuptools documentation page: 2024-05-23T09:33:31,198 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-05-23T09:33:31,199 If you don't want 'funvip.test_dataset.terrei.Query' to be distributed and are 2024-05-23T09:33:31,199 already explicitly excluding 'funvip.test_dataset.terrei.Query' via 2024-05-23T09:33:31,200 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-05-23T09:33:31,201 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-05-23T09:33:31,201 combination with a more fine grained `package-data` configuration. 2024-05-23T09:33:31,203 You can read more about "package data files" on setuptools documentation page: 2024-05-23T09:33:31,204 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-05-23T09:33:31,206 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-05-23T09:33:31,207 even if it does not contain any `.py` files. 2024-05-23T09:33:31,207 On the other hand, currently there is no concept of package data 2024-05-23T09:33:31,208 directory, all directories are treated like packages. 2024-05-23T09:33:31,209 ******************************************************************************** 2024-05-23T09:33:31,214 !! 2024-05-23T09:33:31,216 check.warn(importable) 2024-05-23T09:33:31,217 copying funvip/data/genus_line.txt -> build/lib/funvip/data 2024-05-23T09:33:31,217 copying funvip/data/Option_manager.xlsx -> build/lib/funvip/data 2024-05-23T09:33:31,218 copying funvip/external/MAFFT_Windows.zip -> build/lib/funvip/external 2024-05-23T09:33:31,219 copying funvip/external/MAFFT_LICENSE -> build/lib/funvip/external 2024-05-23T09:33:31,219 creating build/lib/funvip/preset 2024-05-23T09:33:31,220 copying funvip/preset/fast.yaml -> build/lib/funvip/preset 2024-05-23T09:33:31,220 copying funvip/preset/accurate.yaml -> build/lib/funvip/preset 2024-05-23T09:33:31,221 creating build/lib/funvip/external/BLAST_Windows 2024-05-23T09:33:31,222 copying funvip/external/BLAST_Windows/Uninstall-ncbi-blast-2.12.0+.exe -> build/lib/funvip/external/BLAST_Windows 2024-05-23T09:33:31,222 creating build/lib/funvip/external/BLAST_Windows/bin 2024-05-23T09:33:31,223 copying funvip/external/BLAST_Windows/bin/blastn.exe -> build/lib/funvip/external/BLAST_Windows/bin 2024-05-23T09:33:31,223 copying funvip/external/BLAST_Windows/bin/cleanup-blastdb-volumes.py -> build/lib/funvip/external/BLAST_Windows/bin 2024-05-23T09:33:31,224 copying funvip/external/BLAST_Windows/bin/get_species_taxids.sh -> build/lib/funvip/external/BLAST_Windows/bin 2024-05-23T09:33:31,224 copying funvip/external/BLAST_Windows/bin/legacy_blast.pl -> build/lib/funvip/external/BLAST_Windows/bin 2024-05-23T09:33:31,224 copying funvip/external/BLAST_Windows/bin/makeblastdb.exe -> build/lib/funvip/external/BLAST_Windows/bin 2024-05-23T09:33:31,225 copying funvip/external/BLAST_Windows/bin/nghttp2.dll -> build/lib/funvip/external/BLAST_Windows/bin 2024-05-23T09:33:31,225 copying funvip/external/BLAST_Windows/bin/update_blastdb.pl -> build/lib/funvip/external/BLAST_Windows/bin 2024-05-23T09:33:31,226 creating build/lib/funvip/external/BLAST_Windows/doc 2024-05-23T09:33:31,226 copying funvip/external/BLAST_Windows/doc/README.txt -> build/lib/funvip/external/BLAST_Windows/doc 2024-05-23T09:33:31,227 creating build/lib/funvip/external/FastTree_Windows 2024-05-23T09:33:31,227 copying funvip/external/FastTree_Windows/FastTree.exe -> build/lib/funvip/external/FastTree_Windows 2024-05-23T09:33:31,228 creating build/lib/funvip/external/Gblocks_Windows_0.91b 2024-05-23T09:33:31,228 creating build/lib/funvip/external/Gblocks_Windows_0.91b/Gblocks_0.91b 2024-05-23T09:33:31,229 copying funvip/external/Gblocks_Windows_0.91b/Gblocks_0.91b/Gblocks.exe -> build/lib/funvip/external/Gblocks_Windows_0.91b/Gblocks_0.91b 2024-05-23T09:33:31,229 copying funvip/external/Gblocks_Windows_0.91b/Gblocks_0.91b/nad3.pir -> build/lib/funvip/external/Gblocks_Windows_0.91b/Gblocks_0.91b 2024-05-23T09:33:31,230 copying funvip/external/Gblocks_Windows_0.91b/Gblocks_0.91b/paths -> build/lib/funvip/external/Gblocks_Windows_0.91b/Gblocks_0.91b 2024-05-23T09:33:31,230 creating build/lib/funvip/external/Gblocks_Windows_0.91b/Gblocks_0.91b/Documentation 2024-05-23T09:33:31,231 copying funvip/external/Gblocks_Windows_0.91b/Gblocks_0.91b/Documentation/Gblocks_documentation.html -> build/lib/funvip/external/Gblocks_Windows_0.91b/Gblocks_0.91b/Documentation 2024-05-23T09:33:31,231 creating build/lib/funvip/external/Gblocks_Windows_0.91b/Gblocks_0.91b/more_alignments 2024-05-23T09:33:31,233 copying funvip/external/Gblocks_Windows_0.91b/Gblocks_0.91b/more_alignments/cox2.pir -> build/lib/funvip/external/Gblocks_Windows_0.91b/Gblocks_0.91b/more_alignments 2024-05-23T09:33:31,239 copying funvip/external/Gblocks_Windows_0.91b/Gblocks_0.91b/more_alignments/cytb.pir -> build/lib/funvip/external/Gblocks_Windows_0.91b/Gblocks_0.91b/more_alignments 2024-05-23T09:33:31,249 copying funvip/external/Gblocks_Windows_0.91b/Gblocks_0.91b/more_alignments/nad3.pir -> build/lib/funvip/external/Gblocks_Windows_0.91b/Gblocks_0.91b/more_alignments 2024-05-23T09:33:31,254 copying funvip/external/Gblocks_Windows_0.91b/Gblocks_0.91b/more_alignments/nad5.pir -> build/lib/funvip/external/Gblocks_Windows_0.91b/Gblocks_0.91b/more_alignments 2024-05-23T09:33:31,255 creating build/lib/funvip/external/RAxML_Windows 2024-05-23T09:33:31,256 copying funvip/external/RAxML_Windows/GPL-3.0.txt -> build/lib/funvip/external/RAxML_Windows 2024-05-23T09:33:31,256 copying funvip/external/RAxML_Windows/README -> build/lib/funvip/external/RAxML_Windows 2024-05-23T09:33:31,257 copying funvip/external/RAxML_Windows/raxmlHPC-PTHREADS-AVX2.exe -> build/lib/funvip/external/RAxML_Windows 2024-05-23T09:33:31,258 creating build/lib/funvip/external/iqtree 2024-05-23T09:33:31,258 copying funvip/external/iqtree/example.cf -> build/lib/funvip/external/iqtree 2024-05-23T09:33:31,259 copying funvip/external/iqtree/example.nex -> build/lib/funvip/external/iqtree 2024-05-23T09:33:31,259 copying funvip/external/iqtree/example.phy -> build/lib/funvip/external/iqtree 2024-05-23T09:33:31,262 copying funvip/external/iqtree/models.nex -> build/lib/funvip/external/iqtree 2024-05-23T09:33:31,267 creating build/lib/funvip/external/iqtree/bin 2024-05-23T09:33:31,267 copying funvip/external/iqtree/bin/iqtree2-click.exe -> build/lib/funvip/external/iqtree/bin 2024-05-23T09:33:31,447 copying funvip/external/iqtree/bin/iqtree2.exe -> build/lib/funvip/external/iqtree/bin 2024-05-23T09:33:33,070 copying funvip/external/iqtree/bin/libiomp5md.dll -> build/lib/funvip/external/iqtree/bin 2024-05-23T09:33:33,104 creating build/lib/funvip/external/mmseqs_Windows 2024-05-23T09:33:33,105 copying funvip/external/mmseqs_Windows/LICENSE.md -> build/lib/funvip/external/mmseqs_Windows 2024-05-23T09:33:33,109 copying funvip/external/mmseqs_Windows/README.md -> build/lib/funvip/external/mmseqs_Windows 2024-05-23T09:33:33,112 copying funvip/external/mmseqs_Windows/mmseqs.bat -> build/lib/funvip/external/mmseqs_Windows 2024-05-23T09:33:33,113 creating build/lib/funvip/external/mmseqs_Windows/bin 2024-05-23T09:33:33,114 copying funvip/external/mmseqs_Windows/bin/busybox.exe -> build/lib/funvip/external/mmseqs_Windows/bin 2024-05-23T09:33:33,181 copying funvip/external/mmseqs_Windows/bin/cygbz2-1.dll -> build/lib/funvip/external/mmseqs_Windows/bin 2024-05-23T09:33:33,186 copying funvip/external/mmseqs_Windows/bin/cyggcc_s-seh-1.dll -> build/lib/funvip/external/mmseqs_Windows/bin 2024-05-23T09:33:33,191 copying funvip/external/mmseqs_Windows/bin/cyggomp-1.dll -> build/lib/funvip/external/mmseqs_Windows/bin 2024-05-23T09:33:33,240 copying funvip/external/mmseqs_Windows/bin/cygstdc++-6.dll -> build/lib/funvip/external/mmseqs_Windows/bin 2024-05-23T09:33:33,307 copying funvip/external/mmseqs_Windows/bin/cygwin1.dll -> build/lib/funvip/external/mmseqs_Windows/bin 2024-05-23T09:33:33,381 copying funvip/external/mmseqs_Windows/bin/cygz.dll -> build/lib/funvip/external/mmseqs_Windows/bin 2024-05-23T09:33:33,385 copying funvip/external/mmseqs_Windows/bin/mmseqs.exe -> build/lib/funvip/external/mmseqs_Windows/bin 2024-05-23T09:33:33,687 creating build/lib/funvip/external/mmseqs_Windows/examples 2024-05-23T09:33:33,688 copying funvip/external/mmseqs_Windows/examples/QUERY.fasta -> build/lib/funvip/external/mmseqs_Windows/examples 2024-05-23T09:33:33,695 creating build/lib/funvip/external/mmseqs_Windows/matrices 2024-05-23T09:33:33,696 copying funvip/external/mmseqs_Windows/matrices/PAM10.out -> build/lib/funvip/external/mmseqs_Windows/matrices 2024-05-23T09:33:33,699 copying funvip/external/mmseqs_Windows/matrices/PAM100.out -> build/lib/funvip/external/mmseqs_Windows/matrices 2024-05-23T09:33:33,701 copying funvip/external/mmseqs_Windows/matrices/PAM110.out -> build/lib/funvip/external/mmseqs_Windows/matrices 2024-05-23T09:33:33,703 copying funvip/external/mmseqs_Windows/matrices/PAM120.out -> build/lib/funvip/external/mmseqs_Windows/matrices 2024-05-23T09:33:33,705 copying funvip/external/mmseqs_Windows/matrices/PAM130.out -> build/lib/funvip/external/mmseqs_Windows/matrices 2024-05-23T09:33:33,706 copying funvip/external/mmseqs_Windows/matrices/PAM140.out -> build/lib/funvip/external/mmseqs_Windows/matrices 2024-05-23T09:33:33,709 copying funvip/external/mmseqs_Windows/matrices/PAM150.out -> build/lib/funvip/external/mmseqs_Windows/matrices 2024-05-23T09:33:33,710 copying funvip/external/mmseqs_Windows/matrices/PAM160.out -> build/lib/funvip/external/mmseqs_Windows/matrices 2024-05-23T09:33:33,713 copying funvip/external/mmseqs_Windows/matrices/PAM170.out -> build/lib/funvip/external/mmseqs_Windows/matrices 2024-05-23T09:33:33,715 copying funvip/external/mmseqs_Windows/matrices/PAM180.out -> build/lib/funvip/external/mmseqs_Windows/matrices 2024-05-23T09:33:33,717 copying funvip/external/mmseqs_Windows/matrices/PAM190.out -> build/lib/funvip/external/mmseqs_Windows/matrices 2024-05-23T09:33:33,719 copying funvip/external/mmseqs_Windows/matrices/PAM20.out -> build/lib/funvip/external/mmseqs_Windows/matrices 2024-05-23T09:33:33,721 copying funvip/external/mmseqs_Windows/matrices/PAM30.out -> build/lib/funvip/external/mmseqs_Windows/matrices 2024-05-23T09:33:33,723 copying funvip/external/mmseqs_Windows/matrices/PAM40.out -> build/lib/funvip/external/mmseqs_Windows/matrices 2024-05-23T09:33:33,725 copying funvip/external/mmseqs_Windows/matrices/PAM50.out -> build/lib/funvip/external/mmseqs_Windows/matrices 2024-05-23T09:33:33,727 copying funvip/external/mmseqs_Windows/matrices/PAM60.out -> build/lib/funvip/external/mmseqs_Windows/matrices 2024-05-23T09:33:33,729 copying funvip/external/mmseqs_Windows/matrices/PAM70.out -> build/lib/funvip/external/mmseqs_Windows/matrices 2024-05-23T09:33:33,731 copying funvip/external/mmseqs_Windows/matrices/PAM80.out -> build/lib/funvip/external/mmseqs_Windows/matrices 2024-05-23T09:33:33,733 copying funvip/external/mmseqs_Windows/matrices/PAM90.out -> build/lib/funvip/external/mmseqs_Windows/matrices 2024-05-23T09:33:33,735 copying funvip/external/mmseqs_Windows/matrices/VTML10.out -> build/lib/funvip/external/mmseqs_Windows/matrices 2024-05-23T09:33:33,737 copying funvip/external/mmseqs_Windows/matrices/VTML120.out -> build/lib/funvip/external/mmseqs_Windows/matrices 2024-05-23T09:33:33,739 copying funvip/external/mmseqs_Windows/matrices/VTML160.out -> build/lib/funvip/external/mmseqs_Windows/matrices 2024-05-23T09:33:33,741 copying funvip/external/mmseqs_Windows/matrices/VTML20.out -> build/lib/funvip/external/mmseqs_Windows/matrices 2024-05-23T09:33:33,743 copying funvip/external/mmseqs_Windows/matrices/VTML40.out -> build/lib/funvip/external/mmseqs_Windows/matrices 2024-05-23T09:33:33,745 copying funvip/external/mmseqs_Windows/matrices/VTML80.out -> build/lib/funvip/external/mmseqs_Windows/matrices 2024-05-23T09:33:33,747 copying funvip/external/mmseqs_Windows/matrices/blosum100.out -> build/lib/funvip/external/mmseqs_Windows/matrices 2024-05-23T09:33:33,749 copying funvip/external/mmseqs_Windows/matrices/blosum30.out -> build/lib/funvip/external/mmseqs_Windows/matrices 2024-05-23T09:33:33,751 copying funvip/external/mmseqs_Windows/matrices/blosum35.out -> build/lib/funvip/external/mmseqs_Windows/matrices 2024-05-23T09:33:33,754 copying funvip/external/mmseqs_Windows/matrices/blosum40.out -> build/lib/funvip/external/mmseqs_Windows/matrices 2024-05-23T09:33:33,756 copying funvip/external/mmseqs_Windows/matrices/blosum45.out -> build/lib/funvip/external/mmseqs_Windows/matrices 2024-05-23T09:33:33,758 copying funvip/external/mmseqs_Windows/matrices/blosum50.out -> build/lib/funvip/external/mmseqs_Windows/matrices 2024-05-23T09:33:33,760 copying funvip/external/mmseqs_Windows/matrices/blosum55.out -> build/lib/funvip/external/mmseqs_Windows/matrices 2024-05-23T09:33:33,762 copying funvip/external/mmseqs_Windows/matrices/blosum60.out -> build/lib/funvip/external/mmseqs_Windows/matrices 2024-05-23T09:33:33,765 copying funvip/external/mmseqs_Windows/matrices/blosum62.out -> build/lib/funvip/external/mmseqs_Windows/matrices 2024-05-23T09:33:33,768 copying funvip/external/mmseqs_Windows/matrices/blosum65.out -> build/lib/funvip/external/mmseqs_Windows/matrices 2024-05-23T09:33:33,771 copying funvip/external/mmseqs_Windows/matrices/blosum70.out -> build/lib/funvip/external/mmseqs_Windows/matrices 2024-05-23T09:33:33,774 copying funvip/external/mmseqs_Windows/matrices/blosum75.out -> build/lib/funvip/external/mmseqs_Windows/matrices 2024-05-23T09:33:33,777 copying funvip/external/mmseqs_Windows/matrices/blosum80.out -> build/lib/funvip/external/mmseqs_Windows/matrices 2024-05-23T09:33:33,780 copying funvip/external/mmseqs_Windows/matrices/blosum85.out -> build/lib/funvip/external/mmseqs_Windows/matrices 2024-05-23T09:33:33,783 copying funvip/external/mmseqs_Windows/matrices/blosum90.out -> build/lib/funvip/external/mmseqs_Windows/matrices 2024-05-23T09:33:33,785 copying funvip/external/mmseqs_Windows/matrices/blosum95.out -> build/lib/funvip/external/mmseqs_Windows/matrices 2024-05-23T09:33:33,788 copying funvip/external/mmseqs_Windows/matrices/nucleotide.out -> build/lib/funvip/external/mmseqs_Windows/matrices 2024-05-23T09:33:33,791 creating build/lib/funvip/external/mmseqs_Windows/util 2024-05-23T09:33:33,792 copying funvip/external/mmseqs_Windows/util/bash-completion.sh -> build/lib/funvip/external/mmseqs_Windows/util 2024-05-23T09:33:33,795 creating build/lib/funvip/external/trimal.v1.4 2024-05-23T09:33:33,795 creating build/lib/funvip/external/trimal.v1.4/trimAl 2024-05-23T09:33:33,797 copying funvip/external/trimal.v1.4/trimAl/AUTHORS -> build/lib/funvip/external/trimal.v1.4/trimAl 2024-05-23T09:33:33,799 copying funvip/external/trimal.v1.4/trimAl/CHANGELOG -> build/lib/funvip/external/trimal.v1.4/trimAl 2024-05-23T09:33:33,802 copying funvip/external/trimal.v1.4/trimAl/LICENSE -> build/lib/funvip/external/trimal.v1.4/trimAl 2024-05-23T09:33:33,806 copying funvip/external/trimal.v1.4/trimAl/README -> build/lib/funvip/external/trimal.v1.4/trimAl 2024-05-23T09:33:33,809 creating build/lib/funvip/external/trimal.v1.4/trimAl/bin 2024-05-23T09:33:33,810 copying funvip/external/trimal.v1.4/trimAl/bin/libgcc_s_dw2-1.dll -> build/lib/funvip/external/trimal.v1.4/trimAl/bin 2024-05-23T09:33:33,836 copying funvip/external/trimal.v1.4/trimAl/bin/libstdc++-6.dll -> build/lib/funvip/external/trimal.v1.4/trimAl/bin 2024-05-23T09:33:33,872 copying funvip/external/trimal.v1.4/trimAl/bin/trimal.exe -> build/lib/funvip/external/trimal.v1.4/trimAl/bin 2024-05-23T09:33:33,881 creating build/lib/funvip/external/trimal.v1.4/trimAl/scripts 2024-05-23T09:33:33,882 copying funvip/external/trimal.v1.4/trimAl/scripts/check_codon_alignments.py -> build/lib/funvip/external/trimal.v1.4/trimAl/scripts 2024-05-23T09:33:33,884 copying funvip/external/trimal.v1.4/trimAl/scripts/compare_trimmed_msas.sh -> build/lib/funvip/external/trimal.v1.4/trimAl/scripts 2024-05-23T09:33:33,886 copying funvip/external/trimal.v1.4/trimAl/scripts/generateRandomAlignmentsUsingAsSeedRealAlignments.py -> build/lib/funvip/external/trimal.v1.4/trimAl/scripts 2024-05-23T09:33:33,889 copying funvip/external/trimal.v1.4/trimAl/scripts/generate_trimmed_msas.sh -> build/lib/funvip/external/trimal.v1.4/trimAl/scripts 2024-05-23T09:33:33,893 copying funvip/external/trimal.v1.4/trimAl/scripts/get_sequence_representative_from_alignment.py -> build/lib/funvip/external/trimal.v1.4/trimAl/scripts 2024-05-23T09:33:33,895 copying funvip/external/trimal.v1.4/trimAl/scripts/get_sequences_gaps_ratio.py -> build/lib/funvip/external/trimal.v1.4/trimAl/scripts 2024-05-23T09:33:33,897 copying funvip/external/trimal.v1.4/trimAl/scripts/remove_shorter_sequences.py -> build/lib/funvip/external/trimal.v1.4/trimAl/scripts 2024-05-23T09:33:33,899 copying funvip/external/trimal.v1.4/trimAl/scripts/selective_trimming_for_dNdS_analyses.based_neighbours.py -> build/lib/funvip/external/trimal.v1.4/trimAl/scripts 2024-05-23T09:33:33,902 copying funvip/external/trimal.v1.4/trimAl/scripts/set_manual_boundaries.py -> build/lib/funvip/external/trimal.v1.4/trimAl/scripts 2024-05-23T09:33:33,905 creating build/lib/funvip/external/trimal.v1.4/trimAl/source 2024-05-23T09:33:33,906 copying funvip/external/trimal.v1.4/trimAl/source/alignment.cpp -> build/lib/funvip/external/trimal.v1.4/trimAl/source 2024-05-23T09:33:33,910 copying funvip/external/trimal.v1.4/trimAl/source/alignment.h -> build/lib/funvip/external/trimal.v1.4/trimAl/source 2024-05-23T09:33:33,913 copying funvip/external/trimal.v1.4/trimAl/source/alignment.o -> build/lib/funvip/external/trimal.v1.4/trimAl/source 2024-05-23T09:33:33,918 copying funvip/external/trimal.v1.4/trimAl/source/autAlignment.cpp -> build/lib/funvip/external/trimal.v1.4/trimAl/source 2024-05-23T09:33:33,921 copying funvip/external/trimal.v1.4/trimAl/source/autAlignment.o -> build/lib/funvip/external/trimal.v1.4/trimAl/source 2024-05-23T09:33:33,924 copying funvip/external/trimal.v1.4/trimAl/source/compareFiles.cpp -> build/lib/funvip/external/trimal.v1.4/trimAl/source 2024-05-23T09:33:33,928 copying funvip/external/trimal.v1.4/trimAl/source/compareFiles.h -> build/lib/funvip/external/trimal.v1.4/trimAl/source 2024-05-23T09:33:33,934 copying funvip/external/trimal.v1.4/trimAl/source/compareFiles.o -> build/lib/funvip/external/trimal.v1.4/trimAl/source 2024-05-23T09:33:33,940 copying funvip/external/trimal.v1.4/trimAl/source/defines.h -> build/lib/funvip/external/trimal.v1.4/trimAl/source 2024-05-23T09:33:33,945 copying funvip/external/trimal.v1.4/trimAl/source/main.cpp -> build/lib/funvip/external/trimal.v1.4/trimAl/source 2024-05-23T09:33:33,954 copying funvip/external/trimal.v1.4/trimAl/source/makefile -> build/lib/funvip/external/trimal.v1.4/trimAl/source 2024-05-23T09:33:33,962 copying funvip/external/trimal.v1.4/trimAl/source/makefile.MacOS -> build/lib/funvip/external/trimal.v1.4/trimAl/source 2024-05-23T09:33:33,970 copying funvip/external/trimal.v1.4/trimAl/source/readAl.cpp -> build/lib/funvip/external/trimal.v1.4/trimAl/source 2024-05-23T09:33:33,985 copying funvip/external/trimal.v1.4/trimAl/source/readal.exe -> build/lib/funvip/external/trimal.v1.4/trimAl/source 2024-05-23T09:33:34,005 copying funvip/external/trimal.v1.4/trimAl/source/rwAlignment.cpp -> build/lib/funvip/external/trimal.v1.4/trimAl/source 2024-05-23T09:33:34,017 copying funvip/external/trimal.v1.4/trimAl/source/rwAlignment.o -> build/lib/funvip/external/trimal.v1.4/trimAl/source 2024-05-23T09:33:34,029 copying funvip/external/trimal.v1.4/trimAl/source/sequencesMatrix.cpp -> build/lib/funvip/external/trimal.v1.4/trimAl/source 2024-05-23T09:33:34,038 copying funvip/external/trimal.v1.4/trimAl/source/sequencesMatrix.h -> build/lib/funvip/external/trimal.v1.4/trimAl/source 2024-05-23T09:33:34,045 copying funvip/external/trimal.v1.4/trimAl/source/sequencesMatrix.o -> build/lib/funvip/external/trimal.v1.4/trimAl/source 2024-05-23T09:33:34,053 copying funvip/external/trimal.v1.4/trimAl/source/similarityMatrix.cpp -> build/lib/funvip/external/trimal.v1.4/trimAl/source 2024-05-23T09:33:34,063 copying funvip/external/trimal.v1.4/trimAl/source/similarityMatrix.h -> build/lib/funvip/external/trimal.v1.4/trimAl/source 2024-05-23T09:33:34,068 copying funvip/external/trimal.v1.4/trimAl/source/similarityMatrix.o -> build/lib/funvip/external/trimal.v1.4/trimAl/source 2024-05-23T09:33:34,071 copying funvip/external/trimal.v1.4/trimAl/source/statAl.cpp -> build/lib/funvip/external/trimal.v1.4/trimAl/source 2024-05-23T09:33:34,073 copying funvip/external/trimal.v1.4/trimAl/source/statal.exe -> build/lib/funvip/external/trimal.v1.4/trimAl/source 2024-05-23T09:33:34,080 copying funvip/external/trimal.v1.4/trimAl/source/statisticsConservation.cpp -> build/lib/funvip/external/trimal.v1.4/trimAl/source 2024-05-23T09:33:34,083 copying funvip/external/trimal.v1.4/trimAl/source/statisticsConservation.h -> build/lib/funvip/external/trimal.v1.4/trimAl/source 2024-05-23T09:33:34,085 copying funvip/external/trimal.v1.4/trimAl/source/statisticsConservation.o -> build/lib/funvip/external/trimal.v1.4/trimAl/source 2024-05-23T09:33:34,088 copying funvip/external/trimal.v1.4/trimAl/source/statisticsFiles.cpp -> build/lib/funvip/external/trimal.v1.4/trimAl/source 2024-05-23T09:33:34,090 copying funvip/external/trimal.v1.4/trimAl/source/statisticsFiles.h -> build/lib/funvip/external/trimal.v1.4/trimAl/source 2024-05-23T09:33:34,092 copying funvip/external/trimal.v1.4/trimAl/source/statisticsGaps.cpp -> build/lib/funvip/external/trimal.v1.4/trimAl/source 2024-05-23T09:33:34,095 copying funvip/external/trimal.v1.4/trimAl/source/statisticsGaps.h -> build/lib/funvip/external/trimal.v1.4/trimAl/source 2024-05-23T09:33:34,097 copying funvip/external/trimal.v1.4/trimAl/source/statisticsGaps.o -> build/lib/funvip/external/trimal.v1.4/trimAl/source 2024-05-23T09:33:34,100 copying funvip/external/trimal.v1.4/trimAl/source/utils.cpp -> build/lib/funvip/external/trimal.v1.4/trimAl/source 2024-05-23T09:33:34,103 copying funvip/external/trimal.v1.4/trimAl/source/utils.h -> build/lib/funvip/external/trimal.v1.4/trimAl/source 2024-05-23T09:33:34,105 copying funvip/external/trimal.v1.4/trimAl/source/utils.o -> build/lib/funvip/external/trimal.v1.4/trimAl/source 2024-05-23T09:33:34,108 copying funvip/external/trimal.v1.4/trimAl/source/values.h -> build/lib/funvip/external/trimal.v1.4/trimAl/source 2024-05-23T09:33:34,111 copying funvip/preset/.gitignore -> build/lib/funvip/preset 2024-05-23T09:33:34,113 copying funvip/src/.gitignore -> build/lib/funvip/src 2024-05-23T09:33:34,115 creating build/lib/funvip/src/__pycache__ 2024-05-23T09:33:34,116 copying funvip/src/__pycache__/CATV_pipe.cpython-310.pyc -> build/lib/funvip/src/__pycache__ 2024-05-23T09:33:34,118 copying funvip/src/__pycache__/CAT_V.cpython-310.pyc -> build/lib/funvip/src/__pycache__ 2024-05-23T09:33:34,121 copying funvip/src/__pycache__/CAT_V.cpython-39.pyc -> build/lib/funvip/src/__pycache__ 2024-05-23T09:33:34,124 copying funvip/src/__pycache__/CAT_V_pipe.cpython-39.pyc -> build/lib/funvip/src/__pycache__ 2024-05-23T09:33:34,126 copying funvip/src/__pycache__/__init__.cpython-310.pyc -> build/lib/funvip/src/__pycache__ 2024-05-23T09:33:34,128 copying funvip/src/__pycache__/__init__.cpython-39.pyc -> build/lib/funvip/src/__pycache__ 2024-05-23T09:33:34,131 copying funvip/src/__pycache__/align.cpython-310.pyc -> build/lib/funvip/src/__pycache__ 2024-05-23T09:33:34,133 copying funvip/src/__pycache__/cluster.cpython-39.pyc -> build/lib/funvip/src/__pycache__ 2024-05-23T09:33:34,135 copying funvip/src/__pycache__/dataset.cpython-39.pyc -> build/lib/funvip/src/__pycache__ 2024-05-23T09:33:34,137 copying funvip/src/__pycache__/ext.cpython-310.pyc -> build/lib/funvip/src/__pycache__ 2024-05-23T09:33:34,140 copying funvip/src/__pycache__/ext.cpython-39.pyc -> build/lib/funvip/src/__pycache__ 2024-05-23T09:33:34,142 copying funvip/src/__pycache__/hasher.cpython-39.pyc -> build/lib/funvip/src/__pycache__ 2024-05-23T09:33:34,145 copying funvip/src/__pycache__/initialize.cpython-39.pyc -> build/lib/funvip/src/__pycache__ 2024-05-23T09:33:34,147 copying funvip/src/__pycache__/io.cpython-310.pyc -> build/lib/funvip/src/__pycache__ 2024-05-23T09:33:34,150 copying funvip/src/__pycache__/io.cpython-39.pyc -> build/lib/funvip/src/__pycache__ 2024-05-23T09:33:34,153 copying funvip/src/__pycache__/logger.cpython-39.pyc -> build/lib/funvip/src/__pycache__ 2024-05-23T09:33:34,155 copying funvip/src/__pycache__/modeltest.cpython-39.pyc -> build/lib/funvip/src/__pycache__ 2024-05-23T09:33:34,157 copying funvip/src/__pycache__/multigene.cpython-39.pyc -> build/lib/funvip/src/__pycache__ 2024-05-23T09:33:34,159 copying funvip/src/__pycache__/ncbi.cpython-39.pyc -> build/lib/funvip/src/__pycache__ 2024-05-23T09:33:34,161 copying funvip/src/__pycache__/opt_generator.cpython-39.pyc -> build/lib/funvip/src/__pycache__ 2024-05-23T09:33:34,163 copying funvip/src/__pycache__/reporter.cpython-39.pyc -> build/lib/funvip/src/__pycache__ 2024-05-23T09:33:34,166 copying funvip/src/__pycache__/search.cpython-39.pyc -> build/lib/funvip/src/__pycache__ 2024-05-23T09:33:34,169 copying funvip/src/__pycache__/tool.cpython-39.pyc -> build/lib/funvip/src/__pycache__ 2024-05-23T09:33:34,171 copying funvip/src/__pycache__/validation.cpython-39.pyc -> build/lib/funvip/src/__pycache__ 2024-05-23T09:33:34,173 copying funvip/src/__pycache__/visualize.cpython-39.pyc -> build/lib/funvip/src/__pycache__ 2024-05-23T09:33:34,175 creating build/lib/funvip/src/templates 2024-05-23T09:33:34,176 copying funvip/src/templates/template.html -> build/lib/funvip/src/templates 2024-05-23T09:33:34,178 creating build/lib/funvip/test_dataset 2024-05-23T09:33:34,179 creating build/lib/funvip/test_dataset/penicillium 2024-05-23T09:33:34,180 copying funvip/test_dataset/penicillium/Options.config -> build/lib/funvip/test_dataset/penicillium 2024-05-23T09:33:34,182 copying funvip/test_dataset/penicillium/preset.yaml -> build/lib/funvip/test_dataset/penicillium 2024-05-23T09:33:34,185 creating build/lib/funvip/test_dataset/penicillium/DB 2024-05-23T09:33:34,186 copying funvip/test_dataset/penicillium/DB/DB_Penicillium.xlsx -> build/lib/funvip/test_dataset/penicillium/DB 2024-05-23T09:33:34,193 creating build/lib/funvip/test_dataset/penicillium/Query 2024-05-23T09:33:34,194 copying funvip/test_dataset/penicillium/Query/Query.xlsx -> build/lib/funvip/test_dataset/penicillium/Query 2024-05-23T09:33:34,197 creating build/lib/funvip/test_dataset/terrei 2024-05-23T09:33:34,198 copying funvip/test_dataset/terrei/preset.yaml -> build/lib/funvip/test_dataset/terrei 2024-05-23T09:33:34,200 creating build/lib/funvip/test_dataset/terrei/DB 2024-05-23T09:33:34,201 copying funvip/test_dataset/terrei/DB/FunVIP_Aspergillus_db.xlsx -> build/lib/funvip/test_dataset/terrei/DB 2024-05-23T09:33:34,204 creating build/lib/funvip/test_dataset/terrei/Query 2024-05-23T09:33:34,205 copying funvip/test_dataset/terrei/Query/FunVIP_Aspergillus_query.xlsx -> build/lib/funvip/test_dataset/terrei/Query 2024-05-23T09:33:34,217 installing to build/bdist.linux-armv7l/wheel 2024-05-23T09:33:34,218 running install 2024-05-23T09:33:34,241 running install_lib 2024-05-23T09:33:34,246 creating build/bdist.linux-armv7l 2024-05-23T09:33:34,246 creating build/bdist.linux-armv7l/wheel 2024-05-23T09:33:34,248 creating build/bdist.linux-armv7l/wheel/funvip 2024-05-23T09:33:34,249 copying build/lib/funvip/FunVIP_GUI.py -> build/bdist.linux-armv7l/wheel/funvip 2024-05-23T09:33:34,252 creating build/bdist.linux-armv7l/wheel/funvip/data 2024-05-23T09:33:34,253 copying build/lib/funvip/data/__init__.py -> build/bdist.linux-armv7l/wheel/funvip/data 2024-05-23T09:33:34,254 copying build/lib/funvip/data/genus_line.txt -> build/bdist.linux-armv7l/wheel/funvip/data 2024-05-23T09:33:34,257 copying build/lib/funvip/data/Option_manager.xlsx -> build/bdist.linux-armv7l/wheel/funvip/data 2024-05-23T09:33:34,260 creating build/bdist.linux-armv7l/wheel/funvip/external 2024-05-23T09:33:34,262 creating build/bdist.linux-armv7l/wheel/funvip/external/mmseqs_Windows 2024-05-23T09:33:34,263 creating build/bdist.linux-armv7l/wheel/funvip/external/mmseqs_Windows/util 2024-05-23T09:33:34,264 copying build/lib/funvip/external/mmseqs_Windows/util/bash-completion.sh -> build/bdist.linux-armv7l/wheel/funvip/external/mmseqs_Windows/util 2024-05-23T09:33:34,266 copying build/lib/funvip/external/mmseqs_Windows/LICENSE.md -> build/bdist.linux-armv7l/wheel/funvip/external/mmseqs_Windows 2024-05-23T09:33:34,269 copying build/lib/funvip/external/mmseqs_Windows/README.md -> build/bdist.linux-armv7l/wheel/funvip/external/mmseqs_Windows 2024-05-23T09:33:34,272 copying build/lib/funvip/external/mmseqs_Windows/mmseqs.bat -> build/bdist.linux-armv7l/wheel/funvip/external/mmseqs_Windows 2024-05-23T09:33:34,274 creating build/bdist.linux-armv7l/wheel/funvip/external/mmseqs_Windows/examples 2024-05-23T09:33:34,275 copying build/lib/funvip/external/mmseqs_Windows/examples/QUERY.fasta -> build/bdist.linux-armv7l/wheel/funvip/external/mmseqs_Windows/examples 2024-05-23T09:33:34,283 creating build/bdist.linux-armv7l/wheel/funvip/external/mmseqs_Windows/bin 2024-05-23T09:33:34,284 copying build/lib/funvip/external/mmseqs_Windows/bin/mmseqs.exe -> build/bdist.linux-armv7l/wheel/funvip/external/mmseqs_Windows/bin 2024-05-23T09:33:34,851 copying build/lib/funvip/external/mmseqs_Windows/bin/cygbz2-1.dll -> build/bdist.linux-armv7l/wheel/funvip/external/mmseqs_Windows/bin 2024-05-23T09:33:34,857 copying build/lib/funvip/external/mmseqs_Windows/bin/cyggcc_s-seh-1.dll -> build/bdist.linux-armv7l/wheel/funvip/external/mmseqs_Windows/bin 2024-05-23T09:33:34,864 copying build/lib/funvip/external/mmseqs_Windows/bin/cygwin1.dll -> build/bdist.linux-armv7l/wheel/funvip/external/mmseqs_Windows/bin 2024-05-23T09:33:34,953 copying build/lib/funvip/external/mmseqs_Windows/bin/cygstdc++-6.dll -> build/bdist.linux-armv7l/wheel/funvip/external/mmseqs_Windows/bin 2024-05-23T09:33:35,015 copying build/lib/funvip/external/mmseqs_Windows/bin/cyggomp-1.dll -> build/bdist.linux-armv7l/wheel/funvip/external/mmseqs_Windows/bin 2024-05-23T09:33:35,026 copying build/lib/funvip/external/mmseqs_Windows/bin/busybox.exe -> build/bdist.linux-armv7l/wheel/funvip/external/mmseqs_Windows/bin 2024-05-23T09:33:35,040 copying build/lib/funvip/external/mmseqs_Windows/bin/cygz.dll -> build/bdist.linux-armv7l/wheel/funvip/external/mmseqs_Windows/bin 2024-05-23T09:33:35,044 creating build/bdist.linux-armv7l/wheel/funvip/external/mmseqs_Windows/matrices 2024-05-23T09:33:35,045 copying build/lib/funvip/external/mmseqs_Windows/matrices/VTML80.out -> build/bdist.linux-armv7l/wheel/funvip/external/mmseqs_Windows/matrices 2024-05-23T09:33:35,047 copying build/lib/funvip/external/mmseqs_Windows/matrices/PAM120.out -> build/bdist.linux-armv7l/wheel/funvip/external/mmseqs_Windows/matrices 2024-05-23T09:33:35,049 copying build/lib/funvip/external/mmseqs_Windows/matrices/PAM60.out -> build/bdist.linux-armv7l/wheel/funvip/external/mmseqs_Windows/matrices 2024-05-23T09:33:35,051 copying build/lib/funvip/external/mmseqs_Windows/matrices/PAM50.out -> build/bdist.linux-armv7l/wheel/funvip/external/mmseqs_Windows/matrices 2024-05-23T09:33:35,053 copying build/lib/funvip/external/mmseqs_Windows/matrices/blosum65.out -> build/bdist.linux-armv7l/wheel/funvip/external/mmseqs_Windows/matrices 2024-05-23T09:33:35,055 copying build/lib/funvip/external/mmseqs_Windows/matrices/PAM70.out -> build/bdist.linux-armv7l/wheel/funvip/external/mmseqs_Windows/matrices 2024-05-23T09:33:35,056 copying build/lib/funvip/external/mmseqs_Windows/matrices/VTML10.out -> build/bdist.linux-armv7l/wheel/funvip/external/mmseqs_Windows/matrices 2024-05-23T09:33:35,058 copying build/lib/funvip/external/mmseqs_Windows/matrices/PAM90.out -> build/bdist.linux-armv7l/wheel/funvip/external/mmseqs_Windows/matrices 2024-05-23T09:33:35,060 copying build/lib/funvip/external/mmseqs_Windows/matrices/PAM80.out -> build/bdist.linux-armv7l/wheel/funvip/external/mmseqs_Windows/matrices 2024-05-23T09:33:35,062 copying build/lib/funvip/external/mmseqs_Windows/matrices/VTML20.out -> build/bdist.linux-armv7l/wheel/funvip/external/mmseqs_Windows/matrices 2024-05-23T09:33:35,064 copying build/lib/funvip/external/mmseqs_Windows/matrices/PAM10.out -> build/bdist.linux-armv7l/wheel/funvip/external/mmseqs_Windows/matrices 2024-05-23T09:33:35,065 copying build/lib/funvip/external/mmseqs_Windows/matrices/blosum90.out -> build/bdist.linux-armv7l/wheel/funvip/external/mmseqs_Windows/matrices 2024-05-23T09:33:35,067 copying build/lib/funvip/external/mmseqs_Windows/matrices/PAM190.out -> build/bdist.linux-armv7l/wheel/funvip/external/mmseqs_Windows/matrices 2024-05-23T09:33:35,069 copying build/lib/funvip/external/mmseqs_Windows/matrices/blosum85.out -> build/bdist.linux-armv7l/wheel/funvip/external/mmseqs_Windows/matrices 2024-05-23T09:33:35,071 copying build/lib/funvip/external/mmseqs_Windows/matrices/blosum40.out -> build/bdist.linux-armv7l/wheel/funvip/external/mmseqs_Windows/matrices 2024-05-23T09:33:35,073 copying build/lib/funvip/external/mmseqs_Windows/matrices/blosum70.out -> build/bdist.linux-armv7l/wheel/funvip/external/mmseqs_Windows/matrices 2024-05-23T09:33:35,075 copying build/lib/funvip/external/mmseqs_Windows/matrices/blosum62.out -> build/bdist.linux-armv7l/wheel/funvip/external/mmseqs_Windows/matrices 2024-05-23T09:33:35,076 copying build/lib/funvip/external/mmseqs_Windows/matrices/blosum55.out -> build/bdist.linux-armv7l/wheel/funvip/external/mmseqs_Windows/matrices 2024-05-23T09:33:35,078 copying build/lib/funvip/external/mmseqs_Windows/matrices/PAM180.out -> build/bdist.linux-armv7l/wheel/funvip/external/mmseqs_Windows/matrices 2024-05-23T09:33:35,080 copying build/lib/funvip/external/mmseqs_Windows/matrices/blosum95.out -> build/bdist.linux-armv7l/wheel/funvip/external/mmseqs_Windows/matrices 2024-05-23T09:33:35,082 copying build/lib/funvip/external/mmseqs_Windows/matrices/blosum30.out -> build/bdist.linux-armv7l/wheel/funvip/external/mmseqs_Windows/matrices 2024-05-23T09:33:35,084 copying build/lib/funvip/external/mmseqs_Windows/matrices/blosum45.out -> build/bdist.linux-armv7l/wheel/funvip/external/mmseqs_Windows/matrices 2024-05-23T09:33:35,086 copying build/lib/funvip/external/mmseqs_Windows/matrices/PAM20.out -> build/bdist.linux-armv7l/wheel/funvip/external/mmseqs_Windows/matrices 2024-05-23T09:33:35,088 copying build/lib/funvip/external/mmseqs_Windows/matrices/PAM140.out -> build/bdist.linux-armv7l/wheel/funvip/external/mmseqs_Windows/matrices 2024-05-23T09:33:35,090 copying build/lib/funvip/external/mmseqs_Windows/matrices/PAM110.out -> build/bdist.linux-armv7l/wheel/funvip/external/mmseqs_Windows/matrices 2024-05-23T09:33:35,091 copying build/lib/funvip/external/mmseqs_Windows/matrices/PAM160.out -> build/bdist.linux-armv7l/wheel/funvip/external/mmseqs_Windows/matrices 2024-05-23T09:33:35,094 copying build/lib/funvip/external/mmseqs_Windows/matrices/blosum60.out -> build/bdist.linux-armv7l/wheel/funvip/external/mmseqs_Windows/matrices 2024-05-23T09:33:35,095 copying build/lib/funvip/external/mmseqs_Windows/matrices/blosum50.out -> build/bdist.linux-armv7l/wheel/funvip/external/mmseqs_Windows/matrices 2024-05-23T09:33:35,097 copying build/lib/funvip/external/mmseqs_Windows/matrices/blosum35.out -> build/bdist.linux-armv7l/wheel/funvip/external/mmseqs_Windows/matrices 2024-05-23T09:33:35,099 copying build/lib/funvip/external/mmseqs_Windows/matrices/PAM170.out -> build/bdist.linux-armv7l/wheel/funvip/external/mmseqs_Windows/matrices 2024-05-23T09:33:35,101 copying build/lib/funvip/external/mmseqs_Windows/matrices/PAM30.out -> build/bdist.linux-armv7l/wheel/funvip/external/mmseqs_Windows/matrices 2024-05-23T09:33:35,102 copying build/lib/funvip/external/mmseqs_Windows/matrices/nucleotide.out -> build/bdist.linux-armv7l/wheel/funvip/external/mmseqs_Windows/matrices 2024-05-23T09:33:35,104 copying build/lib/funvip/external/mmseqs_Windows/matrices/PAM40.out -> build/bdist.linux-armv7l/wheel/funvip/external/mmseqs_Windows/matrices 2024-05-23T09:33:35,106 copying build/lib/funvip/external/mmseqs_Windows/matrices/VTML160.out -> build/bdist.linux-armv7l/wheel/funvip/external/mmseqs_Windows/matrices 2024-05-23T09:33:35,108 copying build/lib/funvip/external/mmseqs_Windows/matrices/blosum100.out -> build/bdist.linux-armv7l/wheel/funvip/external/mmseqs_Windows/matrices 2024-05-23T09:33:35,109 copying build/lib/funvip/external/mmseqs_Windows/matrices/blosum75.out -> build/bdist.linux-armv7l/wheel/funvip/external/mmseqs_Windows/matrices 2024-05-23T09:33:35,111 copying build/lib/funvip/external/mmseqs_Windows/matrices/VTML120.out -> build/bdist.linux-armv7l/wheel/funvip/external/mmseqs_Windows/matrices 2024-05-23T09:33:35,113 copying build/lib/funvip/external/mmseqs_Windows/matrices/blosum80.out -> build/bdist.linux-armv7l/wheel/funvip/external/mmseqs_Windows/matrices 2024-05-23T09:33:35,115 copying build/lib/funvip/external/mmseqs_Windows/matrices/PAM150.out -> build/bdist.linux-armv7l/wheel/funvip/external/mmseqs_Windows/matrices 2024-05-23T09:33:35,117 copying build/lib/funvip/external/mmseqs_Windows/matrices/PAM100.out -> build/bdist.linux-armv7l/wheel/funvip/external/mmseqs_Windows/matrices 2024-05-23T09:33:35,119 copying build/lib/funvip/external/mmseqs_Windows/matrices/PAM130.out -> build/bdist.linux-armv7l/wheel/funvip/external/mmseqs_Windows/matrices 2024-05-23T09:33:35,120 copying build/lib/funvip/external/mmseqs_Windows/matrices/VTML40.out -> build/bdist.linux-armv7l/wheel/funvip/external/mmseqs_Windows/matrices 2024-05-23T09:33:35,123 creating build/bdist.linux-armv7l/wheel/funvip/external/RAxML_Windows 2024-05-23T09:33:35,124 copying build/lib/funvip/external/RAxML_Windows/GPL-3.0.txt -> build/bdist.linux-armv7l/wheel/funvip/external/RAxML_Windows 2024-05-23T09:33:35,127 copying build/lib/funvip/external/RAxML_Windows/raxmlHPC-PTHREADS-AVX2.exe -> build/bdist.linux-armv7l/wheel/funvip/external/RAxML_Windows 2024-05-23T09:33:35,153 copying build/lib/funvip/external/RAxML_Windows/README -> build/bdist.linux-armv7l/wheel/funvip/external/RAxML_Windows 2024-05-23T09:33:35,155 creating build/bdist.linux-armv7l/wheel/funvip/external/trimal.v1.4 2024-05-23T09:33:35,156 creating build/bdist.linux-armv7l/wheel/funvip/external/trimal.v1.4/trimAl 2024-05-23T09:33:35,158 creating build/bdist.linux-armv7l/wheel/funvip/external/trimal.v1.4/trimAl/scripts 2024-05-23T09:33:35,159 copying build/lib/funvip/external/trimal.v1.4/trimAl/scripts/generateRandomAlignmentsUsingAsSeedRealAlignments.py -> build/bdist.linux-armv7l/wheel/funvip/external/trimal.v1.4/trimAl/scripts 2024-05-23T09:33:35,161 copying build/lib/funvip/external/trimal.v1.4/trimAl/scripts/compare_trimmed_msas.sh -> build/bdist.linux-armv7l/wheel/funvip/external/trimal.v1.4/trimAl/scripts 2024-05-23T09:33:35,163 copying build/lib/funvip/external/trimal.v1.4/trimAl/scripts/remove_shorter_sequences.py -> build/bdist.linux-armv7l/wheel/funvip/external/trimal.v1.4/trimAl/scripts 2024-05-23T09:33:35,164 copying build/lib/funvip/external/trimal.v1.4/trimAl/scripts/get_sequences_gaps_ratio.py -> build/bdist.linux-armv7l/wheel/funvip/external/trimal.v1.4/trimAl/scripts 2024-05-23T09:33:35,166 copying build/lib/funvip/external/trimal.v1.4/trimAl/scripts/check_codon_alignments.py -> build/bdist.linux-armv7l/wheel/funvip/external/trimal.v1.4/trimAl/scripts 2024-05-23T09:33:35,168 copying build/lib/funvip/external/trimal.v1.4/trimAl/scripts/set_manual_boundaries.py -> build/bdist.linux-armv7l/wheel/funvip/external/trimal.v1.4/trimAl/scripts 2024-05-23T09:33:35,171 copying build/lib/funvip/external/trimal.v1.4/trimAl/scripts/generate_trimmed_msas.sh -> build/bdist.linux-armv7l/wheel/funvip/external/trimal.v1.4/trimAl/scripts 2024-05-23T09:33:35,174 copying build/lib/funvip/external/trimal.v1.4/trimAl/scripts/selective_trimming_for_dNdS_analyses.based_neighbours.py -> build/bdist.linux-armv7l/wheel/funvip/external/trimal.v1.4/trimAl/scripts 2024-05-23T09:33:35,176 copying build/lib/funvip/external/trimal.v1.4/trimAl/scripts/get_sequence_representative_from_alignment.py -> build/bdist.linux-armv7l/wheel/funvip/external/trimal.v1.4/trimAl/scripts 2024-05-23T09:33:35,178 copying build/lib/funvip/external/trimal.v1.4/trimAl/LICENSE -> build/bdist.linux-armv7l/wheel/funvip/external/trimal.v1.4/trimAl 2024-05-23T09:33:35,181 copying build/lib/funvip/external/trimal.v1.4/trimAl/CHANGELOG -> build/bdist.linux-armv7l/wheel/funvip/external/trimal.v1.4/trimAl 2024-05-23T09:33:35,184 creating build/bdist.linux-armv7l/wheel/funvip/external/trimal.v1.4/trimAl/source 2024-05-23T09:33:35,185 copying build/lib/funvip/external/trimal.v1.4/trimAl/source/statAl.cpp -> build/bdist.linux-armv7l/wheel/funvip/external/trimal.v1.4/trimAl/source 2024-05-23T09:33:35,188 copying build/lib/funvip/external/trimal.v1.4/trimAl/source/similarityMatrix.h -> build/bdist.linux-armv7l/wheel/funvip/external/trimal.v1.4/trimAl/source 2024-05-23T09:33:35,190 copying build/lib/funvip/external/trimal.v1.4/trimAl/source/statisticsFiles.cpp -> build/bdist.linux-armv7l/wheel/funvip/external/trimal.v1.4/trimAl/source 2024-05-23T09:33:35,191 copying build/lib/funvip/external/trimal.v1.4/trimAl/source/readal.exe -> build/bdist.linux-armv7l/wheel/funvip/external/trimal.v1.4/trimAl/source 2024-05-23T09:33:35,198 copying build/lib/funvip/external/trimal.v1.4/trimAl/source/rwAlignment.o -> build/bdist.linux-armv7l/wheel/funvip/external/trimal.v1.4/trimAl/source 2024-05-23T09:33:35,202 copying build/lib/funvip/external/trimal.v1.4/trimAl/source/readAl.cpp -> build/bdist.linux-armv7l/wheel/funvip/external/trimal.v1.4/trimAl/source 2024-05-23T09:33:35,204 copying build/lib/funvip/external/trimal.v1.4/trimAl/source/sequencesMatrix.o -> build/bdist.linux-armv7l/wheel/funvip/external/trimal.v1.4/trimAl/source 2024-05-23T09:33:35,206 copying build/lib/funvip/external/trimal.v1.4/trimAl/source/statisticsFiles.h -> build/bdist.linux-armv7l/wheel/funvip/external/trimal.v1.4/trimAl/source 2024-05-23T09:33:35,208 copying build/lib/funvip/external/trimal.v1.4/trimAl/source/compareFiles.h -> build/bdist.linux-armv7l/wheel/funvip/external/trimal.v1.4/trimAl/source 2024-05-23T09:33:35,210 copying build/lib/funvip/external/trimal.v1.4/trimAl/source/similarityMatrix.o -> build/bdist.linux-armv7l/wheel/funvip/external/trimal.v1.4/trimAl/source 2024-05-23T09:33:35,212 copying build/lib/funvip/external/trimal.v1.4/trimAl/source/alignment.h -> build/bdist.linux-armv7l/wheel/funvip/external/trimal.v1.4/trimAl/source 2024-05-23T09:33:35,215 copying build/lib/funvip/external/trimal.v1.4/trimAl/source/autAlignment.o -> build/bdist.linux-armv7l/wheel/funvip/external/trimal.v1.4/trimAl/source 2024-05-23T09:33:35,217 copying build/lib/funvip/external/trimal.v1.4/trimAl/source/utils.cpp -> build/bdist.linux-armv7l/wheel/funvip/external/trimal.v1.4/trimAl/source 2024-05-23T09:33:35,220 copying build/lib/funvip/external/trimal.v1.4/trimAl/source/autAlignment.cpp -> build/bdist.linux-armv7l/wheel/funvip/external/trimal.v1.4/trimAl/source 2024-05-23T09:33:35,222 copying build/lib/funvip/external/trimal.v1.4/trimAl/source/sequencesMatrix.cpp -> build/bdist.linux-armv7l/wheel/funvip/external/trimal.v1.4/trimAl/source 2024-05-23T09:33:35,224 copying build/lib/funvip/external/trimal.v1.4/trimAl/source/main.cpp -> build/bdist.linux-armv7l/wheel/funvip/external/trimal.v1.4/trimAl/source 2024-05-23T09:33:35,228 copying build/lib/funvip/external/trimal.v1.4/trimAl/source/statisticsGaps.h -> build/bdist.linux-armv7l/wheel/funvip/external/trimal.v1.4/trimAl/source 2024-05-23T09:33:35,230 copying build/lib/funvip/external/trimal.v1.4/trimAl/source/alignment.cpp -> build/bdist.linux-armv7l/wheel/funvip/external/trimal.v1.4/trimAl/source 2024-05-23T09:33:35,234 copying build/lib/funvip/external/trimal.v1.4/trimAl/source/utils.o -> build/bdist.linux-armv7l/wheel/funvip/external/trimal.v1.4/trimAl/source 2024-05-23T09:33:35,236 copying build/lib/funvip/external/trimal.v1.4/trimAl/source/sequencesMatrix.h -> build/bdist.linux-armv7l/wheel/funvip/external/trimal.v1.4/trimAl/source 2024-05-23T09:33:35,238 copying build/lib/funvip/external/trimal.v1.4/trimAl/source/compareFiles.o -> build/bdist.linux-armv7l/wheel/funvip/external/trimal.v1.4/trimAl/source 2024-05-23T09:33:35,241 copying build/lib/funvip/external/trimal.v1.4/trimAl/source/statisticsGaps.o -> build/bdist.linux-armv7l/wheel/funvip/external/trimal.v1.4/trimAl/source 2024-05-23T09:33:35,243 copying build/lib/funvip/external/trimal.v1.4/trimAl/source/statisticsGaps.cpp -> build/bdist.linux-armv7l/wheel/funvip/external/trimal.v1.4/trimAl/source 2024-05-23T09:33:35,246 copying build/lib/funvip/external/trimal.v1.4/trimAl/source/statisticsConservation.h -> build/bdist.linux-armv7l/wheel/funvip/external/trimal.v1.4/trimAl/source 2024-05-23T09:33:35,248 copying build/lib/funvip/external/trimal.v1.4/trimAl/source/defines.h -> build/bdist.linux-armv7l/wheel/funvip/external/trimal.v1.4/trimAl/source 2024-05-23T09:33:35,250 copying build/lib/funvip/external/trimal.v1.4/trimAl/source/statisticsConservation.cpp -> build/bdist.linux-armv7l/wheel/funvip/external/trimal.v1.4/trimAl/source 2024-05-23T09:33:35,252 copying build/lib/funvip/external/trimal.v1.4/trimAl/source/statisticsConservation.o -> build/bdist.linux-armv7l/wheel/funvip/external/trimal.v1.4/trimAl/source 2024-05-23T09:33:35,254 copying build/lib/funvip/external/trimal.v1.4/trimAl/source/makefile.MacOS -> build/bdist.linux-armv7l/wheel/funvip/external/trimal.v1.4/trimAl/source 2024-05-23T09:33:35,256 copying build/lib/funvip/external/trimal.v1.4/trimAl/source/utils.h -> build/bdist.linux-armv7l/wheel/funvip/external/trimal.v1.4/trimAl/source 2024-05-23T09:33:35,258 copying build/lib/funvip/external/trimal.v1.4/trimAl/source/rwAlignment.cpp -> build/bdist.linux-armv7l/wheel/funvip/external/trimal.v1.4/trimAl/source 2024-05-23T09:33:35,262 copying build/lib/funvip/external/trimal.v1.4/trimAl/source/compareFiles.cpp -> build/bdist.linux-armv7l/wheel/funvip/external/trimal.v1.4/trimAl/source 2024-05-23T09:33:35,264 copying build/lib/funvip/external/trimal.v1.4/trimAl/source/values.h -> build/bdist.linux-armv7l/wheel/funvip/external/trimal.v1.4/trimAl/source 2024-05-23T09:33:35,266 copying build/lib/funvip/external/trimal.v1.4/trimAl/source/makefile -> build/bdist.linux-armv7l/wheel/funvip/external/trimal.v1.4/trimAl/source 2024-05-23T09:33:35,269 copying build/lib/funvip/external/trimal.v1.4/trimAl/source/similarityMatrix.cpp -> build/bdist.linux-armv7l/wheel/funvip/external/trimal.v1.4/trimAl/source 2024-05-23T09:33:35,271 copying build/lib/funvip/external/trimal.v1.4/trimAl/source/statal.exe -> build/bdist.linux-armv7l/wheel/funvip/external/trimal.v1.4/trimAl/source 2024-05-23T09:33:35,278 copying build/lib/funvip/external/trimal.v1.4/trimAl/source/alignment.o -> build/bdist.linux-armv7l/wheel/funvip/external/trimal.v1.4/trimAl/source 2024-05-23T09:33:35,282 copying build/lib/funvip/external/trimal.v1.4/trimAl/AUTHORS -> build/bdist.linux-armv7l/wheel/funvip/external/trimal.v1.4/trimAl 2024-05-23T09:33:35,283 copying build/lib/funvip/external/trimal.v1.4/trimAl/README -> build/bdist.linux-armv7l/wheel/funvip/external/trimal.v1.4/trimAl 2024-05-23T09:33:35,285 creating build/bdist.linux-armv7l/wheel/funvip/external/trimal.v1.4/trimAl/bin 2024-05-23T09:33:35,286 copying build/lib/funvip/external/trimal.v1.4/trimAl/bin/trimal.exe -> build/bdist.linux-armv7l/wheel/funvip/external/trimal.v1.4/trimAl/bin 2024-05-23T09:33:35,296 copying build/lib/funvip/external/trimal.v1.4/trimAl/bin/libgcc_s_dw2-1.dll -> build/bdist.linux-armv7l/wheel/funvip/external/trimal.v1.4/trimAl/bin 2024-05-23T09:33:35,320 copying build/lib/funvip/external/trimal.v1.4/trimAl/bin/libstdc++-6.dll -> build/bdist.linux-armv7l/wheel/funvip/external/trimal.v1.4/trimAl/bin 2024-05-23T09:33:35,352 creating build/bdist.linux-armv7l/wheel/funvip/external/FastTree_Windows 2024-05-23T09:33:35,353 copying build/lib/funvip/external/FastTree_Windows/FastTree.exe -> build/bdist.linux-armv7l/wheel/funvip/external/FastTree_Windows 2024-05-23T09:33:35,361 creating build/bdist.linux-armv7l/wheel/funvip/external/iqtree 2024-05-23T09:33:35,362 copying build/lib/funvip/external/iqtree/models.nex -> build/bdist.linux-armv7l/wheel/funvip/external/iqtree 2024-05-23T09:33:35,366 copying build/lib/funvip/external/iqtree/example.nex -> build/bdist.linux-armv7l/wheel/funvip/external/iqtree 2024-05-23T09:33:35,368 copying build/lib/funvip/external/iqtree/example.phy -> build/bdist.linux-armv7l/wheel/funvip/external/iqtree 2024-05-23T09:33:35,370 copying build/lib/funvip/external/iqtree/example.cf -> build/bdist.linux-armv7l/wheel/funvip/external/iqtree 2024-05-23T09:33:35,415 creating build/bdist.linux-armv7l/wheel/funvip/external/iqtree/bin 2024-05-23T09:33:35,416 copying build/lib/funvip/external/iqtree/bin/iqtree2.exe -> build/bdist.linux-armv7l/wheel/funvip/external/iqtree/bin 2024-05-23T09:33:35,628 copying build/lib/funvip/external/iqtree/bin/iqtree2-click.exe -> build/bdist.linux-armv7l/wheel/funvip/external/iqtree/bin 2024-05-23T09:33:35,822 copying build/lib/funvip/external/iqtree/bin/libiomp5md.dll -> build/bdist.linux-armv7l/wheel/funvip/external/iqtree/bin 2024-05-23T09:33:35,842 copying build/lib/funvip/external/__init__.py -> build/bdist.linux-armv7l/wheel/funvip/external 2024-05-23T09:33:35,843 copying build/lib/funvip/external/MAFFT_Windows.zip -> build/bdist.linux-armv7l/wheel/funvip/external 2024-05-23T09:33:36,246 creating build/bdist.linux-armv7l/wheel/funvip/external/BLAST_Windows 2024-05-23T09:33:36,248 copying build/lib/funvip/external/BLAST_Windows/Uninstall-ncbi-blast-2.12.0+.exe -> build/bdist.linux-armv7l/wheel/funvip/external/BLAST_Windows 2024-05-23T09:33:36,252 creating build/bdist.linux-armv7l/wheel/funvip/external/BLAST_Windows/bin 2024-05-23T09:33:36,253 copying build/lib/funvip/external/BLAST_Windows/bin/update_blastdb.pl -> build/bdist.linux-armv7l/wheel/funvip/external/BLAST_Windows/bin 2024-05-23T09:33:36,256 copying build/lib/funvip/external/BLAST_Windows/bin/get_species_taxids.sh -> build/bdist.linux-armv7l/wheel/funvip/external/BLAST_Windows/bin 2024-05-23T09:33:36,259 copying build/lib/funvip/external/BLAST_Windows/bin/nghttp2.dll -> build/bdist.linux-armv7l/wheel/funvip/external/BLAST_Windows/bin 2024-05-23T09:33:36,263 copying build/lib/funvip/external/BLAST_Windows/bin/makeblastdb.exe -> build/bdist.linux-armv7l/wheel/funvip/external/BLAST_Windows/bin 2024-05-23T09:33:36,468 copying build/lib/funvip/external/BLAST_Windows/bin/legacy_blast.pl -> build/bdist.linux-armv7l/wheel/funvip/external/BLAST_Windows/bin 2024-05-23T09:33:36,471 copying build/lib/funvip/external/BLAST_Windows/bin/blastn.exe -> build/bdist.linux-armv7l/wheel/funvip/external/BLAST_Windows/bin 2024-05-23T09:33:37,251 copying build/lib/funvip/external/BLAST_Windows/bin/cleanup-blastdb-volumes.py -> build/bdist.linux-armv7l/wheel/funvip/external/BLAST_Windows/bin 2024-05-23T09:33:37,255 creating build/bdist.linux-armv7l/wheel/funvip/external/BLAST_Windows/doc 2024-05-23T09:33:37,257 copying build/lib/funvip/external/BLAST_Windows/doc/README.txt -> build/bdist.linux-armv7l/wheel/funvip/external/BLAST_Windows/doc 2024-05-23T09:33:37,259 creating build/bdist.linux-armv7l/wheel/funvip/external/Gblocks_Windows_0.91b 2024-05-23T09:33:37,261 creating build/bdist.linux-armv7l/wheel/funvip/external/Gblocks_Windows_0.91b/Gblocks_0.91b 2024-05-23T09:33:37,262 creating build/bdist.linux-armv7l/wheel/funvip/external/Gblocks_Windows_0.91b/Gblocks_0.91b/more_alignments 2024-05-23T09:33:37,264 copying build/lib/funvip/external/Gblocks_Windows_0.91b/Gblocks_0.91b/more_alignments/nad5.pir -> build/bdist.linux-armv7l/wheel/funvip/external/Gblocks_Windows_0.91b/Gblocks_0.91b/more_alignments 2024-05-23T09:33:37,267 copying build/lib/funvip/external/Gblocks_Windows_0.91b/Gblocks_0.91b/more_alignments/cox2.pir -> build/bdist.linux-armv7l/wheel/funvip/external/Gblocks_Windows_0.91b/Gblocks_0.91b/more_alignments 2024-05-23T09:33:37,270 copying build/lib/funvip/external/Gblocks_Windows_0.91b/Gblocks_0.91b/more_alignments/cytb.pir -> build/bdist.linux-armv7l/wheel/funvip/external/Gblocks_Windows_0.91b/Gblocks_0.91b/more_alignments 2024-05-23T09:33:37,273 copying build/lib/funvip/external/Gblocks_Windows_0.91b/Gblocks_0.91b/more_alignments/nad3.pir -> build/bdist.linux-armv7l/wheel/funvip/external/Gblocks_Windows_0.91b/Gblocks_0.91b/more_alignments 2024-05-23T09:33:37,276 creating build/bdist.linux-armv7l/wheel/funvip/external/Gblocks_Windows_0.91b/Gblocks_0.91b/Documentation 2024-05-23T09:33:37,277 copying build/lib/funvip/external/Gblocks_Windows_0.91b/Gblocks_0.91b/Documentation/Gblocks_documentation.html -> build/bdist.linux-armv7l/wheel/funvip/external/Gblocks_Windows_0.91b/Gblocks_0.91b/Documentation 2024-05-23T09:33:37,281 copying build/lib/funvip/external/Gblocks_Windows_0.91b/Gblocks_0.91b/paths -> build/bdist.linux-armv7l/wheel/funvip/external/Gblocks_Windows_0.91b/Gblocks_0.91b 2024-05-23T09:33:37,283 copying build/lib/funvip/external/Gblocks_Windows_0.91b/Gblocks_0.91b/nad3.pir -> build/bdist.linux-armv7l/wheel/funvip/external/Gblocks_Windows_0.91b/Gblocks_0.91b 2024-05-23T09:33:37,286 copying build/lib/funvip/external/Gblocks_Windows_0.91b/Gblocks_0.91b/Gblocks.exe -> build/bdist.linux-armv7l/wheel/funvip/external/Gblocks_Windows_0.91b/Gblocks_0.91b 2024-05-23T09:33:37,292 copying build/lib/funvip/external/MAFFT_LICENSE -> build/bdist.linux-armv7l/wheel/funvip/external 2024-05-23T09:33:37,295 copying build/lib/funvip/__init__.py -> build/bdist.linux-armv7l/wheel/funvip 2024-05-23T09:33:37,297 creating build/bdist.linux-armv7l/wheel/funvip/preset 2024-05-23T09:33:37,298 copying build/lib/funvip/preset/.gitignore -> build/bdist.linux-armv7l/wheel/funvip/preset 2024-05-23T09:33:37,300 copying build/lib/funvip/preset/fast.yaml -> build/bdist.linux-armv7l/wheel/funvip/preset 2024-05-23T09:33:37,302 copying build/lib/funvip/preset/accurate.yaml -> build/bdist.linux-armv7l/wheel/funvip/preset 2024-05-23T09:33:37,304 copying build/lib/funvip/main.py -> build/bdist.linux-armv7l/wheel/funvip 2024-05-23T09:33:37,308 creating build/bdist.linux-armv7l/wheel/funvip/src 2024-05-23T09:33:37,309 copying build/lib/funvip/src/version.py -> build/bdist.linux-armv7l/wheel/funvip/src 2024-05-23T09:33:37,312 copying build/lib/funvip/src/ncbi.py -> build/bdist.linux-armv7l/wheel/funvip/src 2024-05-23T09:33:37,315 copying build/lib/funvip/src/cluster.py -> build/bdist.linux-armv7l/wheel/funvip/src 2024-05-23T09:33:37,318 copying build/lib/funvip/src/concatenate.py -> build/bdist.linux-armv7l/wheel/funvip/src 2024-05-23T09:33:37,320 copying build/lib/funvip/src/opt_generator.py -> build/bdist.linux-armv7l/wheel/funvip/src 2024-05-23T09:33:37,322 copying build/lib/funvip/src/validate_option.py -> build/bdist.linux-armv7l/wheel/funvip/src 2024-05-23T09:33:37,326 creating build/bdist.linux-armv7l/wheel/funvip/src/templates 2024-05-23T09:33:37,327 copying build/lib/funvip/src/templates/template.html -> build/bdist.linux-armv7l/wheel/funvip/src/templates 2024-05-23T09:33:37,329 copying build/lib/funvip/src/validate_input.py -> build/bdist.linux-armv7l/wheel/funvip/src 2024-05-23T09:33:37,332 copying build/lib/funvip/src/validation.py -> build/bdist.linux-armv7l/wheel/funvip/src 2024-05-23T09:33:37,334 copying build/lib/funvip/src/search.py -> build/bdist.linux-armv7l/wheel/funvip/src 2024-05-23T09:33:37,336 copying build/lib/funvip/src/trim.py -> build/bdist.linux-armv7l/wheel/funvip/src 2024-05-23T09:33:37,339 copying build/lib/funvip/src/tool.py -> build/bdist.linux-armv7l/wheel/funvip/src 2024-05-23T09:33:37,341 copying build/lib/funvip/src/reporter.py -> build/bdist.linux-armv7l/wheel/funvip/src 2024-05-23T09:33:37,344 copying build/lib/funvip/src/logger.py -> build/bdist.linux-armv7l/wheel/funvip/src 2024-05-23T09:33:37,346 copying build/lib/funvip/src/__init__.py -> build/bdist.linux-armv7l/wheel/funvip/src 2024-05-23T09:33:37,348 copying build/lib/funvip/src/dataset.py -> build/bdist.linux-armv7l/wheel/funvip/src 2024-05-23T09:33:37,351 copying build/lib/funvip/src/command.py -> build/bdist.linux-armv7l/wheel/funvip/src 2024-05-23T09:33:37,354 copying build/lib/funvip/src/.gitignore -> build/bdist.linux-armv7l/wheel/funvip/src 2024-05-23T09:33:37,356 copying build/lib/funvip/src/logics.py -> build/bdist.linux-armv7l/wheel/funvip/src 2024-05-23T09:33:37,358 copying build/lib/funvip/src/hasher.py -> build/bdist.linux-armv7l/wheel/funvip/src 2024-05-23T09:33:37,360 copying build/lib/funvip/src/save.py -> build/bdist.linux-armv7l/wheel/funvip/src 2024-05-23T09:33:37,362 copying build/lib/funvip/src/modeltest.py -> build/bdist.linux-armv7l/wheel/funvip/src 2024-05-23T09:33:37,365 copying build/lib/funvip/src/tree.py -> build/bdist.linux-armv7l/wheel/funvip/src 2024-05-23T09:33:37,368 copying build/lib/funvip/src/tree_interpretation.py -> build/bdist.linux-armv7l/wheel/funvip/src 2024-05-23T09:33:37,371 copying build/lib/funvip/src/align.py -> build/bdist.linux-armv7l/wheel/funvip/src 2024-05-23T09:33:37,374 copying build/lib/funvip/src/initialize.py -> build/bdist.linux-armv7l/wheel/funvip/src 2024-05-23T09:33:37,377 copying build/lib/funvip/src/tree_interpretation_pipe.py -> build/bdist.linux-armv7l/wheel/funvip/src 2024-05-23T09:33:37,380 copying build/lib/funvip/src/ext.py -> build/bdist.linux-armv7l/wheel/funvip/src 2024-05-23T09:33:37,384 creating build/bdist.linux-armv7l/wheel/funvip/src/__pycache__ 2024-05-23T09:33:37,385 copying build/lib/funvip/src/__pycache__/io.cpython-310.pyc -> build/bdist.linux-armv7l/wheel/funvip/src/__pycache__ 2024-05-23T09:33:37,388 copying build/lib/funvip/src/__pycache__/visualize.cpython-39.pyc -> build/bdist.linux-armv7l/wheel/funvip/src/__pycache__ 2024-05-23T09:33:37,391 copying build/lib/funvip/src/__pycache__/align.cpython-310.pyc -> build/bdist.linux-armv7l/wheel/funvip/src/__pycache__ 2024-05-23T09:33:37,394 copying build/lib/funvip/src/__pycache__/CAT_V_pipe.cpython-39.pyc -> build/bdist.linux-armv7l/wheel/funvip/src/__pycache__ 2024-05-23T09:33:37,398 copying build/lib/funvip/src/__pycache__/multigene.cpython-39.pyc -> build/bdist.linux-armv7l/wheel/funvip/src/__pycache__ 2024-05-23T09:33:37,401 copying build/lib/funvip/src/__pycache__/initialize.cpython-39.pyc -> build/bdist.linux-armv7l/wheel/funvip/src/__pycache__ 2024-05-23T09:33:37,403 copying build/lib/funvip/src/__pycache__/search.cpython-39.pyc -> build/bdist.linux-armv7l/wheel/funvip/src/__pycache__ 2024-05-23T09:33:37,406 copying build/lib/funvip/src/__pycache__/tool.cpython-39.pyc -> build/bdist.linux-armv7l/wheel/funvip/src/__pycache__ 2024-05-23T09:33:37,408 copying build/lib/funvip/src/__pycache__/reporter.cpython-39.pyc -> build/bdist.linux-armv7l/wheel/funvip/src/__pycache__ 2024-05-23T09:33:37,411 copying build/lib/funvip/src/__pycache__/dataset.cpython-39.pyc -> build/bdist.linux-armv7l/wheel/funvip/src/__pycache__ 2024-05-23T09:33:37,414 copying build/lib/funvip/src/__pycache__/ncbi.cpython-39.pyc -> build/bdist.linux-armv7l/wheel/funvip/src/__pycache__ 2024-05-23T09:33:37,416 copying build/lib/funvip/src/__pycache__/validation.cpython-39.pyc -> build/bdist.linux-armv7l/wheel/funvip/src/__pycache__ 2024-05-23T09:33:37,418 copying build/lib/funvip/src/__pycache__/__init__.cpython-39.pyc -> build/bdist.linux-armv7l/wheel/funvip/src/__pycache__ 2024-05-23T09:33:37,420 copying build/lib/funvip/src/__pycache__/CAT_V.cpython-39.pyc -> build/bdist.linux-armv7l/wheel/funvip/src/__pycache__ 2024-05-23T09:33:37,422 copying build/lib/funvip/src/__pycache__/ext.cpython-39.pyc -> build/bdist.linux-armv7l/wheel/funvip/src/__pycache__ 2024-05-23T09:33:37,425 copying build/lib/funvip/src/__pycache__/cluster.cpython-39.pyc -> build/bdist.linux-armv7l/wheel/funvip/src/__pycache__ 2024-05-23T09:33:37,427 copying build/lib/funvip/src/__pycache__/logger.cpython-39.pyc -> build/bdist.linux-armv7l/wheel/funvip/src/__pycache__ 2024-05-23T09:33:37,429 copying build/lib/funvip/src/__pycache__/ext.cpython-310.pyc -> build/bdist.linux-armv7l/wheel/funvip/src/__pycache__ 2024-05-23T09:33:37,431 copying build/lib/funvip/src/__pycache__/opt_generator.cpython-39.pyc -> build/bdist.linux-armv7l/wheel/funvip/src/__pycache__ 2024-05-23T09:33:37,433 copying build/lib/funvip/src/__pycache__/modeltest.cpython-39.pyc -> build/bdist.linux-armv7l/wheel/funvip/src/__pycache__ 2024-05-23T09:33:37,436 copying build/lib/funvip/src/__pycache__/CAT_V.cpython-310.pyc -> build/bdist.linux-armv7l/wheel/funvip/src/__pycache__ 2024-05-23T09:33:37,438 copying build/lib/funvip/src/__pycache__/hasher.cpython-39.pyc -> build/bdist.linux-armv7l/wheel/funvip/src/__pycache__ 2024-05-23T09:33:37,441 copying build/lib/funvip/src/__pycache__/io.cpython-39.pyc -> build/bdist.linux-armv7l/wheel/funvip/src/__pycache__ 2024-05-23T09:33:37,443 copying build/lib/funvip/src/__pycache__/__init__.cpython-310.pyc -> build/bdist.linux-armv7l/wheel/funvip/src/__pycache__ 2024-05-23T09:33:37,445 copying build/lib/funvip/src/__pycache__/CATV_pipe.cpython-310.pyc -> build/bdist.linux-armv7l/wheel/funvip/src/__pycache__ 2024-05-23T09:33:37,448 creating build/bdist.linux-armv7l/wheel/funvip/test_dataset 2024-05-23T09:33:37,450 creating build/bdist.linux-armv7l/wheel/funvip/test_dataset/penicillium 2024-05-23T09:33:37,451 creating build/bdist.linux-armv7l/wheel/funvip/test_dataset/penicillium/Query 2024-05-23T09:33:37,453 copying build/lib/funvip/test_dataset/penicillium/Query/Query.xlsx -> build/bdist.linux-armv7l/wheel/funvip/test_dataset/penicillium/Query 2024-05-23T09:33:37,456 copying build/lib/funvip/test_dataset/penicillium/preset.yaml -> build/bdist.linux-armv7l/wheel/funvip/test_dataset/penicillium 2024-05-23T09:33:37,459 copying build/lib/funvip/test_dataset/penicillium/Options.config -> build/bdist.linux-armv7l/wheel/funvip/test_dataset/penicillium 2024-05-23T09:33:37,461 creating build/bdist.linux-armv7l/wheel/funvip/test_dataset/penicillium/DB 2024-05-23T09:33:37,462 copying build/lib/funvip/test_dataset/penicillium/DB/DB_Penicillium.xlsx -> build/bdist.linux-armv7l/wheel/funvip/test_dataset/penicillium/DB 2024-05-23T09:33:37,470 creating build/bdist.linux-armv7l/wheel/funvip/test_dataset/terrei 2024-05-23T09:33:37,471 creating build/bdist.linux-armv7l/wheel/funvip/test_dataset/terrei/Query 2024-05-23T09:33:37,472 copying build/lib/funvip/test_dataset/terrei/Query/FunVIP_Aspergillus_query.xlsx -> build/bdist.linux-armv7l/wheel/funvip/test_dataset/terrei/Query 2024-05-23T09:33:37,475 copying build/lib/funvip/test_dataset/terrei/preset.yaml -> build/bdist.linux-armv7l/wheel/funvip/test_dataset/terrei 2024-05-23T09:33:37,477 creating build/bdist.linux-armv7l/wheel/funvip/test_dataset/terrei/DB 2024-05-23T09:33:37,478 copying build/lib/funvip/test_dataset/terrei/DB/FunVIP_Aspergillus_db.xlsx -> build/bdist.linux-armv7l/wheel/funvip/test_dataset/terrei/DB 2024-05-23T09:33:37,480 running install_egg_info 2024-05-23T09:33:37,485 Copying FunVIP.egg-info to build/bdist.linux-armv7l/wheel/FunVIP-0.3.22.2-py3.11.egg-info 2024-05-23T09:33:37,497 running install_scripts 2024-05-23T09:33:37,516 creating build/bdist.linux-armv7l/wheel/FunVIP-0.3.22.2.dist-info/WHEEL 2024-05-23T09:33:37,519 creating '/tmp/pip-wheel-z_6_nck3/.tmp-zj8w11a_/FunVIP-0.3.22.2-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2024-05-23T09:33:37,523 adding 'funvip/FunVIP_GUI.py' 2024-05-23T09:33:37,524 adding 'funvip/__init__.py' 2024-05-23T09:33:37,526 adding 'funvip/main.py' 2024-05-23T09:33:37,530 adding 'funvip/data/Option_manager.xlsx' 2024-05-23T09:33:37,531 adding 'funvip/data/__init__.py' 2024-05-23T09:33:37,538 adding 'funvip/data/genus_line.txt' 2024-05-23T09:33:37,545 adding 'funvip/external/MAFFT_LICENSE' 2024-05-23T09:33:40,575 adding 'funvip/external/MAFFT_Windows.zip' 2024-05-23T09:33:40,743 adding 'funvip/external/__init__.py' 2024-05-23T09:33:40,752 adding 'funvip/external/BLAST_Windows/Uninstall-ncbi-blast-2.12.0+.exe' 2024-05-23T09:33:44,198 adding 'funvip/external/BLAST_Windows/bin/blastn.exe' 2024-05-23T09:33:44,316 adding 'funvip/external/BLAST_Windows/bin/cleanup-blastdb-volumes.py' 2024-05-23T09:33:44,318 adding 'funvip/external/BLAST_Windows/bin/get_species_taxids.sh' 2024-05-23T09:33:44,322 adding 'funvip/external/BLAST_Windows/bin/legacy_blast.pl' 2024-05-23T09:33:46,881 adding 'funvip/external/BLAST_Windows/bin/makeblastdb.exe' 2024-05-23T09:33:46,994 adding 'funvip/external/BLAST_Windows/bin/nghttp2.dll' 2024-05-23T09:33:47,000 adding 'funvip/external/BLAST_Windows/bin/update_blastdb.pl' 2024-05-23T09:33:47,002 adding 'funvip/external/BLAST_Windows/doc/README.txt' 2024-05-23T09:33:47,058 adding 'funvip/external/FastTree_Windows/FastTree.exe' 2024-05-23T09:33:47,099 adding 'funvip/external/Gblocks_Windows_0.91b/Gblocks_0.91b/Gblocks.exe' 2024-05-23T09:33:47,102 adding 'funvip/external/Gblocks_Windows_0.91b/Gblocks_0.91b/nad3.pir' 2024-05-23T09:33:47,103 adding 'funvip/external/Gblocks_Windows_0.91b/Gblocks_0.91b/paths' 2024-05-23T09:33:47,108 adding 'funvip/external/Gblocks_Windows_0.91b/Gblocks_0.91b/Documentation/Gblocks_documentation.html' 2024-05-23T09:33:47,111 adding 'funvip/external/Gblocks_Windows_0.91b/Gblocks_0.91b/more_alignments/cox2.pir' 2024-05-23T09:33:47,112 adding 'funvip/external/Gblocks_Windows_0.91b/Gblocks_0.91b/more_alignments/cytb.pir' 2024-05-23T09:33:47,114 adding 'funvip/external/Gblocks_Windows_0.91b/Gblocks_0.91b/more_alignments/nad3.pir' 2024-05-23T09:33:47,116 adding 'funvip/external/Gblocks_Windows_0.91b/Gblocks_0.91b/more_alignments/nad5.pir' 2024-05-23T09:33:47,123 adding 'funvip/external/RAxML_Windows/GPL-3.0.txt' 2024-05-23T09:33:47,124 adding 'funvip/external/RAxML_Windows/README' 2024-05-23T09:33:47,415 adding 'funvip/external/RAxML_Windows/raxmlHPC-PTHREADS-AVX2.exe' 2024-05-23T09:33:47,506 adding 'funvip/external/iqtree/example.cf' 2024-05-23T09:33:47,521 adding 'funvip/external/iqtree/example.nex' 2024-05-23T09:33:47,534 adding 'funvip/external/iqtree/example.phy' 2024-05-23T09:33:47,564 adding 'funvip/external/iqtree/models.nex' 2024-05-23T09:33:49,636 adding 'funvip/external/iqtree/bin/iqtree2-click.exe' 2024-05-23T09:33:51,804 adding 'funvip/external/iqtree/bin/iqtree2.exe' 2024-05-23T09:33:52,125 adding 'funvip/external/iqtree/bin/libiomp5md.dll' 2024-05-23T09:33:52,138 adding 'funvip/external/mmseqs_Windows/LICENSE.md' 2024-05-23T09:33:52,141 adding 'funvip/external/mmseqs_Windows/README.md' 2024-05-23T09:33:52,142 adding 'funvip/external/mmseqs_Windows/mmseqs.bat' 2024-05-23T09:33:52,274 adding 'funvip/external/mmseqs_Windows/bin/busybox.exe' 2024-05-23T09:33:52,288 adding 'funvip/external/mmseqs_Windows/bin/cygbz2-1.dll' 2024-05-23T09:33:52,301 adding 'funvip/external/mmseqs_Windows/bin/cyggcc_s-seh-1.dll' 2024-05-23T09:33:52,343 adding 'funvip/external/mmseqs_Windows/bin/cyggomp-1.dll' 2024-05-23T09:33:52,611 adding 'funvip/external/mmseqs_Windows/bin/cygstdc++-6.dll' 2024-05-23T09:33:53,210 adding 'funvip/external/mmseqs_Windows/bin/cygwin1.dll' 2024-05-23T09:33:53,247 adding 'funvip/external/mmseqs_Windows/bin/cygz.dll' 2024-05-23T09:33:56,589 adding 'funvip/external/mmseqs_Windows/bin/mmseqs.exe' 2024-05-23T09:33:56,711 adding 'funvip/external/mmseqs_Windows/examples/QUERY.fasta' 2024-05-23T09:33:56,715 adding 'funvip/external/mmseqs_Windows/matrices/PAM10.out' 2024-05-23T09:33:56,717 adding 'funvip/external/mmseqs_Windows/matrices/PAM100.out' 2024-05-23T09:33:56,718 adding 'funvip/external/mmseqs_Windows/matrices/PAM110.out' 2024-05-23T09:33:56,719 adding 'funvip/external/mmseqs_Windows/matrices/PAM120.out' 2024-05-23T09:33:56,721 adding 'funvip/external/mmseqs_Windows/matrices/PAM130.out' 2024-05-23T09:33:56,722 adding 'funvip/external/mmseqs_Windows/matrices/PAM140.out' 2024-05-23T09:33:56,724 adding 'funvip/external/mmseqs_Windows/matrices/PAM150.out' 2024-05-23T09:33:56,725 adding 'funvip/external/mmseqs_Windows/matrices/PAM160.out' 2024-05-23T09:33:56,726 adding 'funvip/external/mmseqs_Windows/matrices/PAM170.out' 2024-05-23T09:33:56,727 adding 'funvip/external/mmseqs_Windows/matrices/PAM180.out' 2024-05-23T09:33:56,729 adding 'funvip/external/mmseqs_Windows/matrices/PAM190.out' 2024-05-23T09:33:56,730 adding 'funvip/external/mmseqs_Windows/matrices/PAM20.out' 2024-05-23T09:33:56,732 adding 'funvip/external/mmseqs_Windows/matrices/PAM30.out' 2024-05-23T09:33:56,733 adding 'funvip/external/mmseqs_Windows/matrices/PAM40.out' 2024-05-23T09:33:56,734 adding 'funvip/external/mmseqs_Windows/matrices/PAM50.out' 2024-05-23T09:33:56,735 adding 'funvip/external/mmseqs_Windows/matrices/PAM60.out' 2024-05-23T09:33:56,737 adding 'funvip/external/mmseqs_Windows/matrices/PAM70.out' 2024-05-23T09:33:56,738 adding 'funvip/external/mmseqs_Windows/matrices/PAM80.out' 2024-05-23T09:33:56,739 adding 'funvip/external/mmseqs_Windows/matrices/PAM90.out' 2024-05-23T09:33:56,741 adding 'funvip/external/mmseqs_Windows/matrices/VTML10.out' 2024-05-23T09:33:56,742 adding 'funvip/external/mmseqs_Windows/matrices/VTML120.out' 2024-05-23T09:33:56,743 adding 'funvip/external/mmseqs_Windows/matrices/VTML160.out' 2024-05-23T09:33:56,745 adding 'funvip/external/mmseqs_Windows/matrices/VTML20.out' 2024-05-23T09:33:56,746 adding 'funvip/external/mmseqs_Windows/matrices/VTML40.out' 2024-05-23T09:33:56,748 adding 'funvip/external/mmseqs_Windows/matrices/VTML80.out' 2024-05-23T09:33:56,749 adding 'funvip/external/mmseqs_Windows/matrices/blosum100.out' 2024-05-23T09:33:56,751 adding 'funvip/external/mmseqs_Windows/matrices/blosum30.out' 2024-05-23T09:33:56,752 adding 'funvip/external/mmseqs_Windows/matrices/blosum35.out' 2024-05-23T09:33:56,754 adding 'funvip/external/mmseqs_Windows/matrices/blosum40.out' 2024-05-23T09:33:56,755 adding 'funvip/external/mmseqs_Windows/matrices/blosum45.out' 2024-05-23T09:33:56,757 adding 'funvip/external/mmseqs_Windows/matrices/blosum50.out' 2024-05-23T09:33:56,759 adding 'funvip/external/mmseqs_Windows/matrices/blosum55.out' 2024-05-23T09:33:56,760 adding 'funvip/external/mmseqs_Windows/matrices/blosum60.out' 2024-05-23T09:33:56,762 adding 'funvip/external/mmseqs_Windows/matrices/blosum62.out' 2024-05-23T09:33:56,763 adding 'funvip/external/mmseqs_Windows/matrices/blosum65.out' 2024-05-23T09:33:56,765 adding 'funvip/external/mmseqs_Windows/matrices/blosum70.out' 2024-05-23T09:33:56,766 adding 'funvip/external/mmseqs_Windows/matrices/blosum75.out' 2024-05-23T09:33:56,768 adding 'funvip/external/mmseqs_Windows/matrices/blosum80.out' 2024-05-23T09:33:56,769 adding 'funvip/external/mmseqs_Windows/matrices/blosum85.out' 2024-05-23T09:33:56,771 adding 'funvip/external/mmseqs_Windows/matrices/blosum90.out' 2024-05-23T09:33:56,772 adding 'funvip/external/mmseqs_Windows/matrices/blosum95.out' 2024-05-23T09:33:56,773 adding 'funvip/external/mmseqs_Windows/matrices/nucleotide.out' 2024-05-23T09:33:56,775 adding 'funvip/external/mmseqs_Windows/util/bash-completion.sh' 2024-05-23T09:33:56,777 adding 'funvip/external/trimal.v1.4/trimAl/AUTHORS' 2024-05-23T09:33:56,778 adding 'funvip/external/trimal.v1.4/trimAl/CHANGELOG' 2024-05-23T09:33:56,784 adding 'funvip/external/trimal.v1.4/trimAl/LICENSE' 2024-05-23T09:33:56,786 adding 'funvip/external/trimal.v1.4/trimAl/README' 2024-05-23T09:33:56,905 adding 'funvip/external/trimal.v1.4/trimAl/bin/libgcc_s_dw2-1.dll' 2024-05-23T09:33:57,408 adding 'funvip/external/trimal.v1.4/trimAl/bin/libstdc++-6.dll' 2024-05-23T09:33:57,476 adding 'funvip/external/trimal.v1.4/trimAl/bin/trimal.exe' 2024-05-23T09:33:57,480 adding 'funvip/external/trimal.v1.4/trimAl/scripts/check_codon_alignments.py' 2024-05-23T09:33:57,481 adding 'funvip/external/trimal.v1.4/trimAl/scripts/compare_trimmed_msas.sh' 2024-05-23T09:33:57,483 adding 'funvip/external/trimal.v1.4/trimAl/scripts/generateRandomAlignmentsUsingAsSeedRealAlignments.py' 2024-05-23T09:33:57,487 adding 'funvip/external/trimal.v1.4/trimAl/scripts/generate_trimmed_msas.sh' 2024-05-23T09:33:57,489 adding 'funvip/external/trimal.v1.4/trimAl/scripts/get_sequence_representative_from_alignment.py' 2024-05-23T09:33:57,490 adding 'funvip/external/trimal.v1.4/trimAl/scripts/get_sequences_gaps_ratio.py' 2024-05-23T09:33:57,492 adding 'funvip/external/trimal.v1.4/trimAl/scripts/remove_shorter_sequences.py' 2024-05-23T09:33:57,494 adding 'funvip/external/trimal.v1.4/trimAl/scripts/selective_trimming_for_dNdS_analyses.based_neighbours.py' 2024-05-23T09:33:57,495 adding 'funvip/external/trimal.v1.4/trimAl/scripts/set_manual_boundaries.py' 2024-05-23T09:33:57,508 adding 'funvip/external/trimal.v1.4/trimAl/source/alignment.cpp' 2024-05-23T09:33:57,511 adding 'funvip/external/trimal.v1.4/trimAl/source/alignment.h' 2024-05-23T09:33:57,535 adding 'funvip/external/trimal.v1.4/trimAl/source/alignment.o' 2024-05-23T09:33:57,538 adding 'funvip/external/trimal.v1.4/trimAl/source/autAlignment.cpp' 2024-05-23T09:33:57,541 adding 'funvip/external/trimal.v1.4/trimAl/source/autAlignment.o' 2024-05-23T09:33:57,543 adding 'funvip/external/trimal.v1.4/trimAl/source/compareFiles.cpp' 2024-05-23T09:33:57,545 adding 'funvip/external/trimal.v1.4/trimAl/source/compareFiles.h' 2024-05-23T09:33:57,547 adding 'funvip/external/trimal.v1.4/trimAl/source/compareFiles.o' 2024-05-23T09:33:57,549 adding 'funvip/external/trimal.v1.4/trimAl/source/defines.h' 2024-05-23T09:33:57,555 adding 'funvip/external/trimal.v1.4/trimAl/source/main.cpp' 2024-05-23T09:33:57,557 adding 'funvip/external/trimal.v1.4/trimAl/source/makefile' 2024-05-23T09:33:57,558 adding 'funvip/external/trimal.v1.4/trimAl/source/makefile.MacOS' 2024-05-23T09:33:57,560 adding 'funvip/external/trimal.v1.4/trimAl/source/readAl.cpp' 2024-05-23T09:33:57,606 adding 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'funvip/test_dataset/penicillium/preset.yaml' 2024-05-23T09:33:57,880 adding 'funvip/test_dataset/penicillium/DB/DB_Penicillium.xlsx' 2024-05-23T09:33:57,887 adding 'funvip/test_dataset/penicillium/Query/Query.xlsx' 2024-05-23T09:33:57,889 adding 'funvip/test_dataset/terrei/preset.yaml' 2024-05-23T09:33:57,892 adding 'funvip/test_dataset/terrei/DB/FunVIP_Aspergillus_db.xlsx' 2024-05-23T09:33:57,895 adding 'funvip/test_dataset/terrei/Query/FunVIP_Aspergillus_query.xlsx' 2024-05-23T09:33:57,901 adding 'FunVIP-0.3.22.2.dist-info/LICENSE' 2024-05-23T09:33:57,902 adding 'FunVIP-0.3.22.2.dist-info/METADATA' 2024-05-23T09:33:57,903 adding 'FunVIP-0.3.22.2.dist-info/WHEEL' 2024-05-23T09:33:57,904 adding 'FunVIP-0.3.22.2.dist-info/entry_points.txt' 2024-05-23T09:33:57,905 adding 'FunVIP-0.3.22.2.dist-info/top_level.txt' 2024-05-23T09:33:57,908 adding 'FunVIP-0.3.22.2.dist-info/RECORD' 2024-05-23T09:33:57,931 removing build/bdist.linux-armv7l/wheel 2024-05-23T09:34:20,167 Building wheel for funvip (pyproject.toml): finished with status 'done' 2024-05-23T09:34:21,417 Created wheel for funvip: filename=FunVIP-0.3.22.2-py3-none-any.whl size=59748731 sha256=8c5e476d94a5e4d4150a89c277d7da56ad82f28db2654cc57194f8614fa8a73c 2024-05-23T09:34:21,418 Stored in directory: /tmp/pip-ephem-wheel-cache-1j9q3wvm/wheels/f5/e0/25/cad1d2c5b749040c921158befbf22697fb85103a63477e9908 2024-05-23T09:34:21,453 Successfully built funvip 2024-05-23T09:34:22,797 Removed build tracker: '/tmp/pip-build-tracker-mmlj8ud8'