2024-05-23T10:35:56,002 Created temporary directory: /tmp/pip-build-tracker-k7w55h3u 2024-05-23T10:35:56,004 Initialized build tracking at /tmp/pip-build-tracker-k7w55h3u 2024-05-23T10:35:56,004 Created build tracker: /tmp/pip-build-tracker-k7w55h3u 2024-05-23T10:35:56,004 Entered build tracker: /tmp/pip-build-tracker-k7w55h3u 2024-05-23T10:35:56,005 Created temporary directory: /tmp/pip-wheel-fy3pet5a 2024-05-23T10:35:56,009 Created temporary directory: /tmp/pip-ephem-wheel-cache-k9wthji8 2024-05-23T10:35:56,033 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2024-05-23T10:35:56,036 2 location(s) to search for versions of kssdtree: 2024-05-23T10:35:56,036 * https://pypi.org/simple/kssdtree/ 2024-05-23T10:35:56,036 * https://www.piwheels.org/simple/kssdtree/ 2024-05-23T10:35:56,037 Fetching project page and analyzing links: https://pypi.org/simple/kssdtree/ 2024-05-23T10:35:56,037 Getting page https://pypi.org/simple/kssdtree/ 2024-05-23T10:35:56,039 Found index url https://pypi.org/simple/ 2024-05-23T10:35:56,091 Fetched page https://pypi.org/simple/kssdtree/ as application/vnd.pypi.simple.v1+json 2024-05-23T10:35:56,092 Found link https://files.pythonhosted.org/packages/d5/1e/9e5c5945a44bb40002d1c259f734a531999fa6e87db89fe7c7ddcfc583cc/kssdtree-1.1.1.tar.gz (from https://pypi.org/simple/kssdtree/), version: 1.1.1 2024-05-23T10:35:56,093 Found link https://files.pythonhosted.org/packages/9a/4c/6516f734f5860e4b30f9091aaac5811663bfae72c4de4ae6566c89192767/kssdtree-1.1.2.tar.gz (from https://pypi.org/simple/kssdtree/), version: 1.1.2 2024-05-23T10:35:56,093 Found link https://files.pythonhosted.org/packages/a4/cd/f2954686c636e853cc3fda197c459195377b78288874cf7d68218a8bdbf4/kssdtree-1.1.3.tar.gz (from https://pypi.org/simple/kssdtree/), version: 1.1.3 2024-05-23T10:35:56,093 Found link https://files.pythonhosted.org/packages/20/ea/b0301924e3f7d367cbb7b8da66837dba9af2a332bf56ed35e03a33faee76/kssdtree-1.1.4.tar.gz (from https://pypi.org/simple/kssdtree/), version: 1.1.4 2024-05-23T10:35:56,093 Fetching project page and analyzing links: https://www.piwheels.org/simple/kssdtree/ 2024-05-23T10:35:56,094 Getting page https://www.piwheels.org/simple/kssdtree/ 2024-05-23T10:35:56,095 Found index url https://www.piwheels.org/simple/ 2024-05-23T10:35:56,180 Fetched page https://www.piwheels.org/simple/kssdtree/ as text/html 2024-05-23T10:35:56,187 Skipping link: No binaries permitted for kssdtree: https://www.piwheels.org/simple/kssdtree/kssdtree-1.1.4-cp37-cp37m-linux_armv6l.whl#sha256=ffef4ae0f634dd977cc2ec6798b9f36f73d788aca27bb7199f552d5513c34413 (from https://www.piwheels.org/simple/kssdtree/) 2024-05-23T10:35:56,187 Skipping link: No binaries permitted for kssdtree: https://www.piwheels.org/simple/kssdtree/kssdtree-1.1.4-cp37-cp37m-linux_armv7l.whl#sha256=ffef4ae0f634dd977cc2ec6798b9f36f73d788aca27bb7199f552d5513c34413 (from https://www.piwheels.org/simple/kssdtree/) 2024-05-23T10:35:56,187 Skipping link: No binaries permitted for kssdtree: https://www.piwheels.org/simple/kssdtree/kssdtree-1.1.4-cp311-cp311-linux_armv6l.whl#sha256=64b685362c3f9027bfeafdffb6a5d58c349a76fd551eeb7b98de146827463e75 (from https://www.piwheels.org/simple/kssdtree/) 2024-05-23T10:35:56,187 Skipping link: No binaries permitted for kssdtree: https://www.piwheels.org/simple/kssdtree/kssdtree-1.1.4-cp311-cp311-linux_armv7l.whl#sha256=64b685362c3f9027bfeafdffb6a5d58c349a76fd551eeb7b98de146827463e75 (from https://www.piwheels.org/simple/kssdtree/) 2024-05-23T10:35:56,188 Skipping link: No binaries permitted for kssdtree: https://www.piwheels.org/simple/kssdtree/kssdtree-1.1.3-cp311-cp311-linux_armv6l.whl#sha256=6b76f3b3f532934ad49a829e7bf8176af580f4687f1491c49c3f571bf081f961 (from https://www.piwheels.org/simple/kssdtree/) 2024-05-23T10:35:56,188 Skipping link: No binaries permitted for kssdtree: https://www.piwheels.org/simple/kssdtree/kssdtree-1.1.3-cp311-cp311-linux_armv7l.whl#sha256=6b76f3b3f532934ad49a829e7bf8176af580f4687f1491c49c3f571bf081f961 (from https://www.piwheels.org/simple/kssdtree/) 2024-05-23T10:35:56,188 Skipping link: No binaries permitted for kssdtree: https://www.piwheels.org/simple/kssdtree/kssdtree-1.1.3-cp37-cp37m-linux_armv6l.whl#sha256=d179f6c6c0ad4e0f06950e1609118b065b3476c47446325f6614bdbef5ede0d0 (from https://www.piwheels.org/simple/kssdtree/) 2024-05-23T10:35:56,188 Skipping link: No binaries permitted for kssdtree: https://www.piwheels.org/simple/kssdtree/kssdtree-1.1.3-cp37-cp37m-linux_armv7l.whl#sha256=d179f6c6c0ad4e0f06950e1609118b065b3476c47446325f6614bdbef5ede0d0 (from https://www.piwheels.org/simple/kssdtree/) 2024-05-23T10:35:56,189 Skipping link: No binaries permitted for kssdtree: https://www.piwheels.org/simple/kssdtree/kssdtree-1.1.3-cp39-cp39-linux_armv6l.whl#sha256=6df2298fa80eefa823153fa0b9db67e35da72da7f88c5949f4f637872ff22c3b (from https://www.piwheels.org/simple/kssdtree/) 2024-05-23T10:35:56,189 Skipping link: No binaries permitted for kssdtree: https://www.piwheels.org/simple/kssdtree/kssdtree-1.1.3-cp39-cp39-linux_armv7l.whl#sha256=6df2298fa80eefa823153fa0b9db67e35da72da7f88c5949f4f637872ff22c3b (from https://www.piwheels.org/simple/kssdtree/) 2024-05-23T10:35:56,189 Skipping link: No binaries permitted for kssdtree: https://www.piwheels.org/simple/kssdtree/kssdtree-1.1.2-cp311-cp311-linux_armv6l.whl#sha256=146b572fde14b0d0770e1c1cd90870ad6db4af293ade814fed7a49e3857f1444 (from https://www.piwheels.org/simple/kssdtree/) 2024-05-23T10:35:56,189 Skipping link: No binaries permitted for kssdtree: https://www.piwheels.org/simple/kssdtree/kssdtree-1.1.2-cp311-cp311-linux_armv7l.whl#sha256=146b572fde14b0d0770e1c1cd90870ad6db4af293ade814fed7a49e3857f1444 (from https://www.piwheels.org/simple/kssdtree/) 2024-05-23T10:35:56,189 Skipping link: No binaries permitted for kssdtree: https://www.piwheels.org/simple/kssdtree/kssdtree-1.1.2-cp37-cp37m-linux_armv6l.whl#sha256=8c0cc1974033765d6eeefdb635a506385b5f38e00361bd6de47ff1a83b07e12a (from https://www.piwheels.org/simple/kssdtree/) 2024-05-23T10:35:56,189 Skipping link: No binaries permitted for kssdtree: https://www.piwheels.org/simple/kssdtree/kssdtree-1.1.2-cp37-cp37m-linux_armv7l.whl#sha256=8c0cc1974033765d6eeefdb635a506385b5f38e00361bd6de47ff1a83b07e12a (from https://www.piwheels.org/simple/kssdtree/) 2024-05-23T10:35:56,190 Skipping link: No binaries permitted for kssdtree: https://www.piwheels.org/simple/kssdtree/kssdtree-1.1.2-cp39-cp39-linux_armv6l.whl#sha256=9f3fe3d3b4b4bde8b34a8f964ebde72f1efcc7833b9a0b34f6b9c8ff3ed595db (from https://www.piwheels.org/simple/kssdtree/) 2024-05-23T10:35:56,190 Skipping link: No binaries permitted for kssdtree: https://www.piwheels.org/simple/kssdtree/kssdtree-1.1.2-cp39-cp39-linux_armv7l.whl#sha256=9f3fe3d3b4b4bde8b34a8f964ebde72f1efcc7833b9a0b34f6b9c8ff3ed595db (from https://www.piwheels.org/simple/kssdtree/) 2024-05-23T10:35:56,190 Skipping link: No binaries permitted for kssdtree: https://www.piwheels.org/simple/kssdtree/kssdtree-1.1.1-cp311-cp311-linux_armv6l.whl#sha256=29b8e7f4a3e60084db855e6d587231253771ad57184a3265922d659512e136fb (from https://www.piwheels.org/simple/kssdtree/) 2024-05-23T10:35:56,190 Skipping link: No binaries permitted for kssdtree: https://www.piwheels.org/simple/kssdtree/kssdtree-1.1.1-cp311-cp311-linux_armv7l.whl#sha256=29b8e7f4a3e60084db855e6d587231253771ad57184a3265922d659512e136fb (from https://www.piwheels.org/simple/kssdtree/) 2024-05-23T10:35:56,190 Skipping link: No binaries permitted for kssdtree: https://www.piwheels.org/simple/kssdtree/kssdtree-1.1.1-cp37-cp37m-linux_armv6l.whl#sha256=34b00b40f17a95b2cc5cbabd880acc2c56996457b0acd265cace6966c10b9575 (from https://www.piwheels.org/simple/kssdtree/) 2024-05-23T10:35:56,191 Skipping link: No binaries permitted for kssdtree: https://www.piwheels.org/simple/kssdtree/kssdtree-1.1.1-cp37-cp37m-linux_armv7l.whl#sha256=34b00b40f17a95b2cc5cbabd880acc2c56996457b0acd265cace6966c10b9575 (from https://www.piwheels.org/simple/kssdtree/) 2024-05-23T10:35:56,191 Skipping link: No binaries permitted for kssdtree: https://www.piwheels.org/simple/kssdtree/kssdtree-1.1.1-cp39-cp39-linux_armv6l.whl#sha256=04471408d60c00f568404b1ab01ca89567b36a1aa50ef6041aceef07ed1e45f4 (from https://www.piwheels.org/simple/kssdtree/) 2024-05-23T10:35:56,191 Skipping link: No binaries permitted for kssdtree: https://www.piwheels.org/simple/kssdtree/kssdtree-1.1.1-cp39-cp39-linux_armv7l.whl#sha256=04471408d60c00f568404b1ab01ca89567b36a1aa50ef6041aceef07ed1e45f4 (from https://www.piwheels.org/simple/kssdtree/) 2024-05-23T10:35:56,191 Skipping link: not a file: https://www.piwheels.org/simple/kssdtree/ 2024-05-23T10:35:56,191 Skipping link: not a file: https://pypi.org/simple/kssdtree/ 2024-05-23T10:35:56,209 Given no hashes to check 1 links for project 'kssdtree': discarding no candidates 2024-05-23T10:35:56,226 Collecting kssdtree==1.1.4 2024-05-23T10:35:56,228 Created temporary directory: /tmp/pip-unpack-4ky95z1p 2024-05-23T10:35:56,271 Downloading kssdtree-1.1.4.tar.gz (113 kB) 2024-05-23T10:35:56,472 Added kssdtree==1.1.4 from https://files.pythonhosted.org/packages/20/ea/b0301924e3f7d367cbb7b8da66837dba9af2a332bf56ed35e03a33faee76/kssdtree-1.1.4.tar.gz to build tracker '/tmp/pip-build-tracker-k7w55h3u' 2024-05-23T10:35:56,474 Running setup.py (path:/tmp/pip-wheel-fy3pet5a/kssdtree_7fc77e6b5bbe49eaa4f8dbae91501083/setup.py) egg_info for package kssdtree 2024-05-23T10:35:56,475 Created temporary directory: /tmp/pip-pip-egg-info-5es5id_a 2024-05-23T10:35:56,475 Preparing metadata (setup.py): started 2024-05-23T10:35:56,476 Running command python setup.py egg_info 2024-05-23T10:35:57,715 running egg_info 2024-05-23T10:35:57,717 creating /tmp/pip-pip-egg-info-5es5id_a/kssdtree.egg-info 2024-05-23T10:35:57,741 writing /tmp/pip-pip-egg-info-5es5id_a/kssdtree.egg-info/PKG-INFO 2024-05-23T10:35:57,744 writing dependency_links to /tmp/pip-pip-egg-info-5es5id_a/kssdtree.egg-info/dependency_links.txt 2024-05-23T10:35:57,747 writing requirements to /tmp/pip-pip-egg-info-5es5id_a/kssdtree.egg-info/requires.txt 2024-05-23T10:35:57,748 writing top-level names to /tmp/pip-pip-egg-info-5es5id_a/kssdtree.egg-info/top_level.txt 2024-05-23T10:35:57,749 writing manifest file '/tmp/pip-pip-egg-info-5es5id_a/kssdtree.egg-info/SOURCES.txt' 2024-05-23T10:35:57,848 reading manifest file '/tmp/pip-pip-egg-info-5es5id_a/kssdtree.egg-info/SOURCES.txt' 2024-05-23T10:35:57,850 reading manifest template 'MANIFEST.in' 2024-05-23T10:35:57,868 writing manifest file '/tmp/pip-pip-egg-info-5es5id_a/kssdtree.egg-info/SOURCES.txt' 2024-05-23T10:35:57,966 Preparing metadata (setup.py): finished with status 'done' 2024-05-23T10:35:57,971 Source in /tmp/pip-wheel-fy3pet5a/kssdtree_7fc77e6b5bbe49eaa4f8dbae91501083 has version 1.1.4, which satisfies requirement kssdtree==1.1.4 from https://files.pythonhosted.org/packages/20/ea/b0301924e3f7d367cbb7b8da66837dba9af2a332bf56ed35e03a33faee76/kssdtree-1.1.4.tar.gz 2024-05-23T10:35:57,972 Removed kssdtree==1.1.4 from https://files.pythonhosted.org/packages/20/ea/b0301924e3f7d367cbb7b8da66837dba9af2a332bf56ed35e03a33faee76/kssdtree-1.1.4.tar.gz from build tracker '/tmp/pip-build-tracker-k7w55h3u' 2024-05-23T10:35:57,976 Created temporary directory: /tmp/pip-unpack-ikxgtewa 2024-05-23T10:35:57,977 Created temporary directory: /tmp/pip-unpack-2d2_142t 2024-05-23T10:35:57,982 Building wheels for collected packages: kssdtree 2024-05-23T10:35:57,986 Created temporary directory: /tmp/pip-wheel-jc2a0fvf 2024-05-23T10:35:57,987 Building wheel for kssdtree (setup.py): started 2024-05-23T10:35:57,987 Destination directory: /tmp/pip-wheel-jc2a0fvf 2024-05-23T10:35:57,988 Running command python setup.py bdist_wheel 2024-05-23T10:35:59,060 running bdist_wheel 2024-05-23T10:35:59,150 running build 2024-05-23T10:35:59,150 running build_py 2024-05-23T10:35:59,176 creating build 2024-05-23T10:35:59,176 creating build/lib.linux-armv7l-cpython-39 2024-05-23T10:35:59,177 copying kssdtree.py -> build/lib.linux-armv7l-cpython-39 2024-05-23T10:35:59,180 copying toolutils.py -> build/lib.linux-armv7l-cpython-39 2024-05-23T10:35:59,182 running egg_info 2024-05-23T10:35:59,234 writing kssdtree.egg-info/PKG-INFO 2024-05-23T10:35:59,237 writing dependency_links to kssdtree.egg-info/dependency_links.txt 2024-05-23T10:35:59,239 writing requirements to kssdtree.egg-info/requires.txt 2024-05-23T10:35:59,240 writing top-level names to kssdtree.egg-info/top_level.txt 2024-05-23T10:35:59,266 reading manifest file 'kssdtree.egg-info/SOURCES.txt' 2024-05-23T10:35:59,269 reading manifest template 'MANIFEST.in' 2024-05-23T10:35:59,287 writing manifest file 'kssdtree.egg-info/SOURCES.txt' 2024-05-23T10:35:59,290 running build_ext 2024-05-23T10:35:59,934 building 'kssd' extension 2024-05-23T10:35:59,934 creating build/temp.linux-armv7l-cpython-39 2024-05-23T10:35:59,935 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ikssdheaders -I/usr/include/python3.9 -c co2mco.c -o build/temp.linux-armv7l-cpython-39/co2mco.o -fopenmp 2024-05-23T10:36:00,137 co2mco.c: In function ‘cdb_kmerf2kmerdb’: 2024-05-23T10:36:00,137 co2mco.c:109:32: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2024-05-23T10:36:00,137 109 | for (unsigned int i = 0; i < comp_num; i++) { 2024-05-23T10:36:00,138 | ^ 2024-05-23T10:36:00,141 co2mco.c: In function ‘co2unitllmco’: 2024-05-23T10:36:00,141 co2mco.c:191:32: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2024-05-23T10:36:00,141 191 | for (unsigned int i = 0; i < bin_sz; i++) { 2024-05-23T10:36:00,141 | ^ 2024-05-23T10:36:00,760 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ikssdheaders -I/usr/include/python3.9 -c command_composite.c -o build/temp.linux-armv7l-cpython-39/command_composite.o -fopenmp 2024-05-23T10:36:01,064 command_composite.c: In function ‘get_species_abundance’: 2024-05-23T10:36:01,065 command_composite.c:32:34: warning: ‘%s’ directive argument is null [-Wformat-overflow=] 2024-05-23T10:36:01,065 32 | if (ref_dstat_fpath == NULL) fprintf(stderr, "cannot find %s under %s ", co_dstat, ref_dstat_fpath); 2024-05-23T10:36:01,065 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-05-23T10:36:01,065 command_composite.c:34:34: warning: ‘%s’ directive argument is null [-Wformat-overflow=] 2024-05-23T10:36:01,065 34 | if (qry_dstat_fpath == NULL) fprintf(stderr, "cannot find %s under %s ", co_dstat, qry_dstat_fpath); 2024-05-23T10:36:01,066 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-05-23T10:36:01,066 command_composite.c:64:37: warning: ‘.’ directive writing 1 byte into a region of size between 0 and 255 [-Wformat-overflow=] 2024-05-23T10:36:01,066 64 | sprintf(tmpfname, "%s/%s.%d", composite_opt->refdir, skch_prefix, c); 2024-05-23T10:36:01,066 | ^ 2024-05-23T10:36:01,066 command_composite.c:64:13: note: ‘sprintf’ output 4 or more bytes (assuming 259) into a destination of size 256 2024-05-23T10:36:01,066 64 | sprintf(tmpfname, "%s/%s.%d", composite_opt->refdir, skch_prefix, c); 2024-05-23T10:36:01,067 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-05-23T10:36:01,067 command_composite.c:70:37: warning: ‘.’ directive writing 1 byte into a region of size between 0 and 255 [-Wformat-overflow=] 2024-05-23T10:36:01,067 70 | sprintf(tmpfname, "%s/%s.%d", composite_opt->refdir, idx_prefix, c); 2024-05-23T10:36:01,067 | ^ 2024-05-23T10:36:01,067 command_composite.c:70:13: note: ‘sprintf’ output 4 or more bytes (assuming 259) into a destination of size 256 2024-05-23T10:36:01,067 70 | sprintf(tmpfname, "%s/%s.%d", composite_opt->refdir, idx_prefix, c); 2024-05-23T10:36:01,067 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-05-23T10:36:01,068 command_composite.c:76:37: warning: ‘.’ directive writing 1 byte into a region of size between 0 and 255 [-Wformat-overflow=] 2024-05-23T10:36:01,068 76 | sprintf(tmpfname, "%s/%s.%d", composite_opt->qrydir, skch_prefix, c); 2024-05-23T10:36:01,068 | ^ 2024-05-23T10:36:01,068 command_composite.c:76:13: note: ‘sprintf’ output 4 or more bytes (assuming 259) into a destination of size 256 2024-05-23T10:36:01,068 76 | sprintf(tmpfname, "%s/%s.%d", composite_opt->qrydir, skch_prefix, c); 2024-05-23T10:36:01,068 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-05-23T10:36:01,068 command_composite.c:82:37: warning: ‘.’ directive writing 1 byte into a region of size between 0 and 255 [-Wformat-overflow=] 2024-05-23T10:36:01,068 82 | sprintf(tmpfname, "%s/%s.%d", composite_opt->qrydir, idx_prefix, c); 2024-05-23T10:36:01,069 | ^ 2024-05-23T10:36:01,069 command_composite.c:82:13: note: ‘sprintf’ output 4 or more bytes (assuming 259) into a destination of size 256 2024-05-23T10:36:01,069 82 | sprintf(tmpfname, "%s/%s.%d", composite_opt->qrydir, idx_prefix, c); 2024-05-23T10:36:01,069 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-05-23T10:36:01,069 command_composite.c:88:37: warning: ‘.’ directive writing 1 byte into a region of size between 0 and 255 [-Wformat-overflow=] 2024-05-23T10:36:01,069 88 | sprintf(tmpfname, "%s/%s.%d.a", composite_opt->qrydir, skch_prefix, c); 2024-05-23T10:36:01,069 | ^ 2024-05-23T10:36:01,069 command_composite.c:88:13: note: ‘sprintf’ output 6 or more bytes (assuming 261) into a destination of size 256 2024-05-23T10:36:01,070 88 | sprintf(tmpfname, "%s/%s.%d.a", composite_opt->qrydir, skch_prefix, c); 2024-05-23T10:36:01,070 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-05-23T10:36:01,308 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ikssdheaders -I/usr/include/python3.9 -c command_dist.c -o build/temp.linux-armv7l-cpython-39/command_dist.o -fopenmp 2024-05-23T10:36:01,519 command_dist.c: In function ‘mco_cbd_co_dist’: 2024-05-23T10:36:01,520 command_dist.c:678:27: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 2024-05-23T10:36:01,520 678 | printf("disf_sz=%lu\trefnum=%d\tqrynum=%d\tnum_mapping_distf=%dbnum_infile=%d\t\t%lu\t%lu\tflag1:Ok\n", 2024-05-23T10:36:01,520 | ~~^ 2024-05-23T10:36:01,520 | | 2024-05-23T10:36:01,520 | long unsigned int 2024-05-23T10:36:01,521 | %u 2024-05-23T10:36:01,521 679 | disf_sz, mco_dstat_readin.infile_num, co_dstat_readin.infile_num, num_mapping_distf, bnum_infile, 2024-05-23T10:36:01,521 | ~~~~~~~ 2024-05-23T10:36:01,521 | | 2024-05-23T10:36:01,521 | size_t {aka unsigned int} 2024-05-23T10:36:01,521 command_dist.c:678:92: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 7 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 2024-05-23T10:36:01,521 678 | printf("disf_sz=%lu\trefnum=%d\tqrynum=%d\tnum_mapping_distf=%dbnum_infile=%d\t\t%lu\t%lu\tflag1:Ok\n", 2024-05-23T10:36:01,521 | ~~^ 2024-05-23T10:36:01,522 | | 2024-05-23T10:36:01,522 | long unsigned int 2024-05-23T10:36:01,522 | %u 2024-05-23T10:36:01,522 679 | disf_sz, mco_dstat_readin.infile_num, co_dstat_readin.infile_num, num_mapping_distf, bnum_infile, 2024-05-23T10:36:01,522 680 | maplength, (size_t) b * unitsz_distf_mapped); 2024-05-23T10:36:01,522 | ~~~~~~~~~ 2024-05-23T10:36:01,522 | | 2024-05-23T10:36:01,522 | size_t {aka unsigned int} 2024-05-23T10:36:01,523 command_dist.c:678:97: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 8 has type ‘unsigned int’ [-Wformat=] 2024-05-23T10:36:01,523 678 | printf("disf_sz=%lu\trefnum=%d\tqrynum=%d\tnum_mapping_distf=%dbnum_infile=%d\t\t%lu\t%lu\tflag1:Ok\n", 2024-05-23T10:36:01,523 | ~~^ 2024-05-23T10:36:01,523 | | 2024-05-23T10:36:01,523 | long unsigned int 2024-05-23T10:36:01,523 | %u 2024-05-23T10:36:01,523 679 | disf_sz, mco_dstat_readin.infile_num, co_dstat_readin.infile_num, num_mapping_distf, bnum_infile, 2024-05-23T10:36:01,524 680 | maplength, (size_t) b * unitsz_distf_mapped); 2024-05-23T10:36:01,524 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-05-23T10:36:01,524 | | 2024-05-23T10:36:01,524 | unsigned int 2024-05-23T10:36:01,525 command_dist.c:716:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2024-05-23T10:36:01,525 716 | for (int n = 0; n < fco_pos[k + 1] - fco_pos[k]; n++) { 2024-05-23T10:36:01,525 | ^ 2024-05-23T10:36:01,531 command_dist.c: In function ‘mco_cbdco_nobin_dist’: 2024-05-23T10:36:01,532 command_dist.c:864:27: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 2024-05-23T10:36:01,532 864 | printf("disf_sz=%lu\trefnum=%d\tqrynum=%d\tnum_mapping_distf=%d\tbatch_qrynum=%d\t%lu\t%lu\n", disf_sz, 2024-05-23T10:36:01,532 | ~~^ ~~~~~~~ 2024-05-23T10:36:01,533 | | | 2024-05-23T10:36:01,533 | long unsigned int size_t {aka unsigned int} 2024-05-23T10:36:01,533 | %u 2024-05-23T10:36:01,534 command_dist.c:864:93: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 7 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 2024-05-23T10:36:01,534 864 | printf("disf_sz=%lu\trefnum=%d\tqrynum=%d\tnum_mapping_distf=%d\tbatch_qrynum=%d\t%lu\t%lu\n", disf_sz, 2024-05-23T10:36:01,534 | ~~^ 2024-05-23T10:36:01,534 | | 2024-05-23T10:36:01,534 | long unsigned int 2024-05-23T10:36:01,534 | %u 2024-05-23T10:36:01,534 865 | mco_dstat_readin.infile_num, co_dstat_readin.infile_num, num_mapping_distf, bnum_infile, maplength, 2024-05-23T10:36:01,534 | ~~~~~~~~~ 2024-05-23T10:36:01,535 | | 2024-05-23T10:36:01,535 | size_t {aka unsigned int} 2024-05-23T10:36:01,535 command_dist.c:864:98: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 8 has type ‘unsigned int’ [-Wformat=] 2024-05-23T10:36:01,535 864 | printf("disf_sz=%lu\trefnum=%d\tqrynum=%d\tnum_mapping_distf=%d\tbatch_qrynum=%d\t%lu\t%lu\n", disf_sz, 2024-05-23T10:36:01,535 | ~~^ 2024-05-23T10:36:01,535 | | 2024-05-23T10:36:01,536 | long unsigned int 2024-05-23T10:36:01,536 | %u 2024-05-23T10:36:01,536 865 | mco_dstat_readin.infile_num, co_dstat_readin.infile_num, num_mapping_distf, bnum_infile, maplength, 2024-05-23T10:36:01,536 866 | (size_t) b * unitsz_distf_mapped); 2024-05-23T10:36:01,536 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-05-23T10:36:01,536 | | 2024-05-23T10:36:01,536 | unsigned int 2024-05-23T10:36:01,537 command_dist.c:811:13: warning: unused variable ‘fco_pos’ [-Wunused-variable] 2024-05-23T10:36:01,537 811 | size_t *fco_pos = malloc(sizeof(size_t) * (co_dstat_readin.infile_num + 1)); 2024-05-23T10:36:01,537 | ^~~~~~~ 2024-05-23T10:36:01,538 command_dist.c:810:17: warning: unused variable ‘cbd_fcode_stat’ [-Wunused-variable] 2024-05-23T10:36:01,538 810 | struct stat cbd_fcode_stat; 2024-05-23T10:36:01,538 | ^~~~~~~~~~~~~~ 2024-05-23T10:36:01,538 command_dist.c:809:31: warning: unused variable ‘cbd_fcode_comp_index_fp’ [-Wunused-variable] 2024-05-23T10:36:01,538 809 | FILE *cbd_fcode_comp_fp, *cbd_fcode_comp_index_fp; 2024-05-23T10:36:01,538 | ^~~~~~~~~~~~~~~~~~~~~~~ 2024-05-23T10:36:01,539 command_dist.c:809:11: warning: unused variable ‘cbd_fcode_comp_fp’ [-Wunused-variable] 2024-05-23T10:36:01,539 809 | FILE *cbd_fcode_comp_fp, *cbd_fcode_comp_index_fp; 2024-05-23T10:36:01,539 | ^~~~~~~~~~~~~~~~~ 2024-05-23T10:36:01,544 command_dist.c: In function ‘mco_cbd_koc_compatible_dist’: 2024-05-23T10:36:01,546 command_dist.c:1019:27: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 2024-05-23T10:36:01,546 1019 | printf("disf_sz=%lu\trefnum=%d\tqrynum=%d\tnum_mapping_distf=%dbnum_infile=%d\t\t%lu\t%lu\tflag1:Ok\n", 2024-05-23T10:36:01,546 | ~~^ 2024-05-23T10:36:01,546 | | 2024-05-23T10:36:01,546 | long unsigned int 2024-05-23T10:36:01,546 | %u 2024-05-23T10:36:01,547 1020 | disf_sz, mco_dstat_readin.infile_num, co_dstat_readin.infile_num, num_mapping_distf, bnum_infile, 2024-05-23T10:36:01,547 | ~~~~~~~ 2024-05-23T10:36:01,547 | | 2024-05-23T10:36:01,547 | size_t {aka unsigned int} 2024-05-23T10:36:01,548 command_dist.c:1019:92: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 7 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 2024-05-23T10:36:01,548 1019 | printf("disf_sz=%lu\trefnum=%d\tqrynum=%d\tnum_mapping_distf=%dbnum_infile=%d\t\t%lu\t%lu\tflag1:Ok\n", 2024-05-23T10:36:01,548 | ~~^ 2024-05-23T10:36:01,548 | | 2024-05-23T10:36:01,548 | long unsigned int 2024-05-23T10:36:01,548 | %u 2024-05-23T10:36:01,548 1020 | disf_sz, mco_dstat_readin.infile_num, co_dstat_readin.infile_num, num_mapping_distf, bnum_infile, 2024-05-23T10:36:01,548 1021 | maplength, (size_t) b * unitsz_distf_mapped); 2024-05-23T10:36:01,548 | ~~~~~~~~~ 2024-05-23T10:36:01,549 | | 2024-05-23T10:36:01,549 | size_t {aka unsigned int} 2024-05-23T10:36:01,549 command_dist.c:1019:97: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 8 has type ‘unsigned int’ [-Wformat=] 2024-05-23T10:36:01,549 1019 | printf("disf_sz=%lu\trefnum=%d\tqrynum=%d\tnum_mapping_distf=%dbnum_infile=%d\t\t%lu\t%lu\tflag1:Ok\n", 2024-05-23T10:36:01,550 | ~~^ 2024-05-23T10:36:01,550 | | 2024-05-23T10:36:01,550 | long unsigned int 2024-05-23T10:36:01,550 | %u 2024-05-23T10:36:01,550 1020 | disf_sz, mco_dstat_readin.infile_num, co_dstat_readin.infile_num, num_mapping_distf, bnum_infile, 2024-05-23T10:36:01,550 1021 | maplength, (size_t) b * unitsz_distf_mapped); 2024-05-23T10:36:01,550 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-05-23T10:36:01,550 | | 2024-05-23T10:36:01,551 | unsigned int 2024-05-23T10:36:01,551 command_dist.c:1035:27: warning: comparison of integer expressions of different signedness: ‘__off_t’ {aka ‘long int’} and ‘unsigned int’ [-Wsign-compare] 2024-05-23T10:36:01,551 1035 | if (s.st_size > sizeof(gidobj_t) * MCOMM_SZ) mco_mem = (gidobj_t *) realloc(mco_mem, s.st_size); 2024-05-23T10:36:01,551 | ^ 2024-05-23T10:36:01,554 command_dist.c: In function ‘mco_co_dist_core’: 2024-05-23T10:36:01,555 command_dist.c:1117:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘gidobj_t’ {aka ‘unsigned int’} [-Wsign-compare] 2024-05-23T10:36:01,555 1117 | for (int k = 1; k < unit_arrmco[ind][0] + 1; k++) { 2024-05-23T10:36:01,555 | ^ 2024-05-23T10:36:01,561 command_dist.c: In function ‘koc_dist_print_nobin’: 2024-05-23T10:36:01,561 command_dist.c:1240:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2024-05-23T10:36:01,562 1240 | for (int rid = 0; rid < ref_num; rid++) 2024-05-23T10:36:01,562 | ^ 2024-05-23T10:36:01,563 command_dist.c:1246:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2024-05-23T10:36:01,563 1246 | for (int rid = 0; rid < ref_num; rid++) { 2024-05-23T10:36:01,563 | ^ 2024-05-23T10:36:01,568 command_dist.c: In function ‘dist_print_nobin’: 2024-05-23T10:36:01,569 command_dist.c:1336:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2024-05-23T10:36:01,569 1336 | if ((N_max > NREF) || (N_max > ref_num)) { 2024-05-23T10:36:01,569 | ^ 2024-05-23T10:36:01,571 command_dist.c:1357:39: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2024-05-23T10:36:01,571 1357 | for (int rid = 0; rid < ref_num; rid++) { 2024-05-23T10:36:01,571 | ^ 2024-05-23T10:36:01,573 command_dist.c:1381:39: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2024-05-23T10:36:01,573 1381 | for (int rid = 0; rid < ref_num; rid++) 2024-05-23T10:36:01,573 | ^ 2024-05-23T10:36:01,573 command_dist.c:1383:39: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2024-05-23T10:36:01,574 1383 | for (int rid = 0; rid < ref_num; rid++) 2024-05-23T10:36:01,574 | ^ 2024-05-23T10:36:01,825 command_dist.c: In function ‘run_stageI._omp_fn.1’: 2024-05-23T10:36:01,826 command_dist.c:404:21: warning: ‘com_abund_fp’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2024-05-23T10:36:01,826 404 | fwrite(tmp_mem, sizeof(unsigned short) * tmpkmerct, 1, com_abund_fp); 2024-05-23T10:36:01,826 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-05-23T10:36:01,826 command_dist.c:376:40: note: ‘com_abund_fp’ was declared here 2024-05-23T10:36:01,826 376 | FILE *com_cofp, *indexfp, *com_abund_fp; 2024-05-23T10:36:01,826 | ^~~~~~~~~~~~ 2024-05-23T10:36:02,554 command_dist.c: In function ‘get_dim_shuffle’: 2024-05-23T10:36:02,555 command_dist.c:268:36: warning: ‘%s’ directive writing up to 264 bytes into a region of size 256 [-Wformat-overflow=] 2024-05-23T10:36:02,555 268 | sprintf(shuf_infile_name, "%s.shuf", shuf_infile_name_prefix); 2024-05-23T10:36:02,555 | ^~ ~~~~~~~~~~~~~~~~~~~~~~~ 2024-05-23T10:36:02,555 command_dist.c:268:9: note: ‘sprintf’ output between 6 and 270 bytes into a destination of size 256 2024-05-23T10:36:02,555 268 | sprintf(shuf_infile_name, "%s.shuf", shuf_infile_name_prefix); 2024-05-23T10:36:02,556 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-05-23T10:36:03,340 command_dist.c: In function ‘mco_cbd_co_dist’: 2024-05-23T10:36:03,341 command_dist.c:597:37: warning: ‘%s’ directive writing 13 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2024-05-23T10:36:03,341 597 | sprintf(refmco_dstat_fpath, "%s/%s", refmco_dname, mco_dstat); 2024-05-23T10:36:03,341 | ^~ ~~~~~~~~~ 2024-05-23T10:36:03,342 command_dist.c:597:5: note: ‘sprintf’ output between 15 and 270 bytes into a destination of size 256 2024-05-23T10:36:03,342 597 | sprintf(refmco_dstat_fpath, "%s/%s", refmco_dname, mco_dstat); 2024-05-23T10:36:03,342 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-05-23T10:36:03,343 command_dist.c:626:25: warning: ‘/sharedk_ct.dat’ directive writing 15 bytes into a region of size between 1 and 256 [-Wformat-overflow=] 2024-05-23T10:36:03,343 626 | sprintf(onedist, "%s/sharedk_ct.dat", distout_dir); 2024-05-23T10:36:03,343 | ^~~~~~~~~~~~~~~ 2024-05-23T10:36:03,344 command_dist.c:626:5: note: ‘sprintf’ output between 16 and 271 bytes into a destination of size 256 2024-05-23T10:36:03,344 626 | sprintf(onedist, "%s/sharedk_ct.dat", distout_dir); 2024-05-23T10:36:03,344 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-05-23T10:36:03,346 command_dist.c:682:41: warning: ‘/mco.index.’ directive writing 11 bytes into a region of size between 1 and 256 [-Wformat-overflow=] 2024-05-23T10:36:03,346 682 | sprintf(mco_index_fcode, "%s/mco.index.%d", refmco_dname, j); 2024-05-23T10:36:03,346 | ^~~~~~~~~~~ 2024-05-23T10:36:03,347 command_dist.c:682:13: note: ‘sprintf’ output between 13 and 278 bytes into a destination of size 256 2024-05-23T10:36:03,347 682 | sprintf(mco_index_fcode, "%s/mco.index.%d", refmco_dname, j); 2024-05-23T10:36:03,347 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-05-23T10:36:03,348 command_dist.c:683:35: warning: ‘/mco.’ directive writing 5 bytes into a region of size between 1 and 256 [-Wformat-overflow=] 2024-05-23T10:36:03,348 683 | sprintf(mco_fcode, "%s/mco.%d", refmco_dname, j); 2024-05-23T10:36:03,348 | ^~~~~ 2024-05-23T10:36:03,348 command_dist.c:683:13: note: ‘sprintf’ output between 7 and 272 bytes into a destination of size 256 2024-05-23T10:36:03,349 683 | sprintf(mco_fcode, "%s/mco.%d", refmco_dname, j); 2024-05-23T10:36:03,349 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-05-23T10:36:03,557 command_dist.c: In function ‘mco_cbdco_nobin_dist’: 2024-05-23T10:36:03,558 command_dist.c:764:37: warning: ‘%s’ directive writing 13 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2024-05-23T10:36:03,558 764 | sprintf(refmco_dstat_fpath, "%s/%s", refmco_dname, mco_dstat); 2024-05-23T10:36:03,558 | ^~ ~~~~~~~~~ 2024-05-23T10:36:03,559 command_dist.c:764:5: note: ‘sprintf’ output between 15 and 270 bytes into a destination of size 256 2024-05-23T10:36:03,559 764 | sprintf(refmco_dstat_fpath, "%s/%s", refmco_dname, mco_dstat); 2024-05-23T10:36:03,559 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-05-23T10:36:03,560 command_dist.c:791:25: warning: ‘/sharedk_ct.dat’ directive writing 15 bytes into a region of size between 1 and 256 [-Wformat-overflow=] 2024-05-23T10:36:03,560 791 | sprintf(onedist, "%s/sharedk_ct.dat", distout_dir); 2024-05-23T10:36:03,560 | ^~~~~~~~~~~~~~~ 2024-05-23T10:36:03,561 command_dist.c:791:5: note: ‘sprintf’ output between 16 and 271 bytes into a destination of size 256 2024-05-23T10:36:03,561 791 | sprintf(onedist, "%s/sharedk_ct.dat", distout_dir); 2024-05-23T10:36:03,561 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-05-23T10:36:03,562 command_dist.c:824:23: warning: ‘/distance.out’ directive writing 13 bytes into a region of size between 1 and 256 [-Wformat-overflow=] 2024-05-23T10:36:03,563 824 | sprintf(distf, "%s/distance.out", distout_dir); 2024-05-23T10:36:03,563 | ^~~~~~~~~~~~~ 2024-05-23T10:36:03,563 command_dist.c:824:5: note: ‘sprintf’ output between 14 and 269 bytes into a destination of size 256 2024-05-23T10:36:03,563 824 | sprintf(distf, "%s/distance.out", distout_dir); 2024-05-23T10:36:03,564 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-05-23T10:36:03,565 command_dist.c:850:39: warning: ‘.’ directive writing 1 byte into a region of size between 0 and 255 [-Wformat-overflow=] 2024-05-23T10:36:03,565 850 | sprintf(mco_index_fcode, "%s/%s.%d", refmco_dname, mco_idx_prefix, j); 2024-05-23T10:36:03,565 | ^ 2024-05-23T10:36:03,566 command_dist.c:850:33: note: directive argument in the range [0, 536870912] 2024-05-23T10:36:03,566 850 | sprintf(mco_index_fcode, "%s/%s.%d", refmco_dname, mco_idx_prefix, j); 2024-05-23T10:36:03,566 | ^~~~~~~~~~ 2024-05-23T10:36:03,567 command_dist.c:850:8: note: ‘sprintf’ output 4 or more bytes (assuming 267) into a destination of size 256 2024-05-23T10:36:03,567 850 | sprintf(mco_index_fcode, "%s/%s.%d", refmco_dname, mco_idx_prefix, j); 2024-05-23T10:36:03,567 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-05-23T10:36:03,568 command_dist.c:852:34: warning: ‘.’ directive writing 1 byte into a region of size between 0 and 255 [-Wformat-overflow=] 2024-05-23T10:36:03,568 852 | sprintf(mco_fcode, "%s/%s.%d", refmco_dname, mco_gids_prefix, j); 2024-05-23T10:36:03,569 | ^ 2024-05-23T10:36:03,569 command_dist.c:852:28: note: directive argument in the range [0, 536870912] 2024-05-23T10:36:03,569 852 | sprintf(mco_fcode, "%s/%s.%d", refmco_dname, mco_gids_prefix, j); 2024-05-23T10:36:03,570 | ^~~~~~~~~~ 2024-05-23T10:36:03,570 command_dist.c:852:9: note: ‘sprintf’ output 4 or more bytes (assuming 267) into a destination of size 256 2024-05-23T10:36:03,570 852 | sprintf(mco_fcode, "%s/%s.%d", refmco_dname, mco_gids_prefix, j); 2024-05-23T10:36:03,571 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-05-23T10:36:03,809 command_dist.c: In function ‘mco_cbd_koc_compatible_dist’: 2024-05-23T10:36:03,810 command_dist.c:928:37: warning: ‘%s’ directive writing 13 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2024-05-23T10:36:03,810 928 | sprintf(refmco_dstat_fpath, "%s/%s", refmco_dname, mco_dstat); 2024-05-23T10:36:03,810 | ^~ ~~~~~~~~~ 2024-05-23T10:36:03,811 command_dist.c:928:5: note: ‘sprintf’ output between 15 and 270 bytes into a destination of size 256 2024-05-23T10:36:03,811 928 | sprintf(refmco_dstat_fpath, "%s/%s", refmco_dname, mco_dstat); 2024-05-23T10:36:03,811 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-05-23T10:36:03,812 command_dist.c:957:25: warning: ‘/sharedk_ct.dat’ directive writing 15 bytes into a region of size between 1 and 256 [-Wformat-overflow=] 2024-05-23T10:36:03,813 957 | sprintf(onedist, "%s/sharedk_ct.dat", distout_dir); 2024-05-23T10:36:03,813 | ^~~~~~~~~~~~~~~ 2024-05-23T10:36:03,813 command_dist.c:957:5: note: ‘sprintf’ output between 16 and 271 bytes into a destination of size 256 2024-05-23T10:36:03,814 957 | sprintf(onedist, "%s/sharedk_ct.dat", distout_dir); 2024-05-23T10:36:03,814 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-05-23T10:36:03,815 command_dist.c:991:23: warning: ‘/distance.out’ directive writing 13 bytes into a region of size between 1 and 256 [-Wformat-overflow=] 2024-05-23T10:36:03,815 991 | sprintf(distf, "%s/distance.out", distout_dir); 2024-05-23T10:36:03,815 | ^~~~~~~~~~~~~ 2024-05-23T10:36:03,816 command_dist.c:991:5: note: ‘sprintf’ output between 14 and 269 bytes into a destination of size 256 2024-05-23T10:36:03,816 991 | sprintf(distf, "%s/distance.out", distout_dir); 2024-05-23T10:36:03,816 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-05-23T10:36:03,818 command_dist.c:1023:41: warning: ‘/mco.index.’ directive writing 11 bytes into a region of size between 1 and 256 [-Wformat-overflow=] 2024-05-23T10:36:03,818 1023 | sprintf(mco_index_fcode, "%s/mco.index.%d", refmco_dname, j); 2024-05-23T10:36:03,818 | ^~~~~~~~~~~ 2024-05-23T10:36:03,819 command_dist.c:1023:13: note: ‘sprintf’ output between 13 and 278 bytes into a destination of size 256 2024-05-23T10:36:03,819 1023 | sprintf(mco_index_fcode, "%s/mco.index.%d", refmco_dname, j); 2024-05-23T10:36:03,819 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-05-23T10:36:03,820 command_dist.c:1024:35: warning: ‘/mco.’ directive writing 5 bytes into a region of size between 1 and 256 [-Wformat-overflow=] 2024-05-23T10:36:03,820 1024 | sprintf(mco_fcode, "%s/mco.%d", refmco_dname, j); 2024-05-23T10:36:03,821 | ^~~~~ 2024-05-23T10:36:03,821 command_dist.c:1024:13: note: ‘sprintf’ output between 7 and 272 bytes into a destination of size 256 2024-05-23T10:36:03,822 1024 | sprintf(mco_fcode, "%s/mco.%d", refmco_dname, j); 2024-05-23T10:36:03,822 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-05-23T10:36:04,069 command_dist.c: In function ‘combine_queries’: 2024-05-23T10:36:04,070 command_dist.c:1493:41: warning: ‘sprintf’ may write a terminating nul past the end of the destination [-Wformat-overflow=] 2024-05-23T10:36:04,070 1493 | sprintf(one_kmerct_list_name, "%s/%s", co_dir, kmerct_list_fname); 2024-05-23T10:36:04,070 | ^ 2024-05-23T10:36:04,072 command_dist.c:1493:5: note: ‘sprintf’ output 2 or more bytes (assuming 257) into a destination of size 256 2024-05-23T10:36:04,072 1493 | sprintf(one_kmerct_list_name, "%s/%s", co_dir, kmerct_list_fname); 2024-05-23T10:36:04,072 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-05-23T10:36:04,073 command_dist.c:1500:40: warning: ‘sprintf’ may write a terminating nul past the end of the destination [-Wformat-overflow=] 2024-05-23T10:36:04,073 1500 | sprintf(one_infilename_name, "%s/%s", co_dir, fname_fname); 2024-05-23T10:36:04,073 | ^ 2024-05-23T10:36:04,075 command_dist.c:1500:5: note: ‘sprintf’ output 2 or more bytes (assuming 257) into a destination of size 256 2024-05-23T10:36:04,075 1500 | sprintf(one_infilename_name, "%s/%s", co_dir, fname_fname); 2024-05-23T10:36:04,075 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-05-23T10:36:04,077 command_dist.c:1604:32: warning: ‘%s’ directive writing 12 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2024-05-23T10:36:04,078 1604 | sprintf(one_stat_name, "%s/%s", co_dir, co_dstat); 2024-05-23T10:36:04,078 | ^~ ~~~~~~~~ 2024-05-23T10:36:04,079 command_dist.c:1604:5: note: ‘sprintf’ output between 14 and 269 bytes into a destination of size 256 2024-05-23T10:36:04,079 1604 | sprintf(one_stat_name, "%s/%s", co_dir, co_dstat); 2024-05-23T10:36:04,079 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-05-23T10:36:04,551 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ikssdheaders -I/usr/include/python3.9 -c command_dist_wrapper.c -o build/temp.linux-armv7l-cpython-39/command_dist_wrapper.o -fopenmp 2024-05-23T10:36:04,718 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ikssdheaders -I/usr/include/python3.9 -c command_set.c -o build/temp.linux-armv7l-cpython-39/command_set.o -fopenmp 2024-05-23T10:36:04,872 command_set.c: In function ‘sketch_operate’: 2024-05-23T10:36:04,872 command_set.c:179:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2024-05-23T10:36:04,872 179 | for(int n = 0; n < fco_pos[i+1] - fco_pos[i]; n++){ 2024-05-23T10:36:04,872 | ^ 2024-05-23T10:36:04,882 command_set.c: In function ‘combin_subset_pans’: 2024-05-23T10:36:04,882 command_set.c:458:10: warning: passing argument 1 of ‘free’ discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers] 2024-05-23T10:36:04,882 458 | free(co_dstat_fpath); 2024-05-23T10:36:04,882 | ^~~~~~~~~~~~~~ 2024-05-23T10:36:04,883 In file included from kssdheaders/global_basic.h:159, 2024-05-23T10:36:04,883 from command_set.c:15: 2024-05-23T10:36:04,883 /usr/include/stdlib.h:565:25: note: expected ‘void *’ but argument is of type ‘const char *’ 2024-05-23T10:36:04,883 565 | extern void free (void *__ptr) __THROW; 2024-05-23T10:36:04,883 | ~~~~~~^~~~~ 2024-05-23T10:36:04,887 command_set.c: In function ‘grouping_genomes’: 2024-05-23T10:36:04,887 command_set.c:563:10: warning: passing argument 1 of ‘free’ discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers] 2024-05-23T10:36:04,888 563 | free(co_dstat_fpath); 2024-05-23T10:36:04,888 | ^~~~~~~~~~~~~~ 2024-05-23T10:36:04,888 In file included from kssdheaders/global_basic.h:159, 2024-05-23T10:36:04,888 from command_set.c:15: 2024-05-23T10:36:04,888 /usr/include/stdlib.h:565:25: note: expected ‘void *’ but argument is of type ‘const char *’ 2024-05-23T10:36:04,888 565 | extern void free (void *__ptr) __THROW; 2024-05-23T10:36:04,888 | ~~~~~~^~~~~ 2024-05-23T10:36:05,003 command_set.c: In function ‘sketch_union’: 2024-05-23T10:36:05,004 command_set.c:72:27: warning: ‘sprintf’ may write a terminating nul past the end of the destination [-Wformat-overflow=] 2024-05-23T10:36:05,004 72 | sprintf(outpath,"%s/%s",set_opt.outdir,co_dstat); 2024-05-23T10:36:05,004 | ^ 2024-05-23T10:36:05,004 command_set.c:72:5: note: ‘sprintf’ output 2 or more bytes (assuming 257) into a destination of size 256 2024-05-23T10:36:05,004 72 | sprintf(outpath,"%s/%s",set_opt.outdir,co_dstat); 2024-05-23T10:36:05,004 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-05-23T10:36:05,005 command_set.c:83:29: warning: ‘%s’ directive writing 6 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2024-05-23T10:36:05,005 83 | sprintf(outpath,"%s/%s.%d",set_opt.insketchpath,skch_prefix,i); 2024-05-23T10:36:05,005 | ^~ ~~~~~~~~~~~ 2024-05-23T10:36:05,005 command_set.c:83:9: note: ‘sprintf’ output between 10 and 275 bytes into a destination of size 256 2024-05-23T10:36:05,005 83 | sprintf(outpath,"%s/%s.%d",set_opt.insketchpath,skch_prefix,i); 2024-05-23T10:36:05,005 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-05-23T10:36:05,005 command_set.c:93:29: warning: ‘%s’ directive writing 3 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2024-05-23T10:36:05,006 93 | sprintf(outpath,"%s/%s.%d",set_opt.outdir,pan_prefix,i); 2024-05-23T10:36:05,006 | ^~ ~~~~~~~~~~ 2024-05-23T10:36:05,006 command_set.c:93:9: note: ‘sprintf’ output between 7 and 272 bytes into a destination of size 256 2024-05-23T10:36:05,006 93 | sprintf(outpath,"%s/%s.%d",set_opt.outdir,pan_prefix,i); 2024-05-23T10:36:05,006 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-05-23T10:36:05,150 command_set.c: In function ‘sketch_operate’: 2024-05-23T10:36:05,150 command_set.c:154:29: warning: ‘%s’ directive writing 3 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2024-05-23T10:36:05,150 154 | sprintf(tmppath,"%s/%s.%d",set_opt.pansketchpath, pan_prefix, c); 2024-05-23T10:36:05,150 | ^~ ~~~~~~~~~~ 2024-05-23T10:36:05,150 command_set.c:154:9: note: ‘sprintf’ output between 7 and 272 bytes into a destination of size 256 2024-05-23T10:36:05,150 154 | sprintf(tmppath,"%s/%s.%d",set_opt.pansketchpath, pan_prefix, c); 2024-05-23T10:36:05,150 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-05-23T10:36:05,151 command_set.c:156:33: warning: ‘%s’ directive writing 8 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2024-05-23T10:36:05,151 156 | sprintf(tmppath,"%s/%s.%d",set_opt.pansketchpath, uniq_pan_prefix, c); 2024-05-23T10:36:05,151 | ^~ ~~~~~~~~~~~~~~~ 2024-05-23T10:36:05,151 command_set.c:156:13: note: ‘sprintf’ output between 12 and 277 bytes into a destination of size 256 2024-05-23T10:36:05,151 156 | sprintf(tmppath,"%s/%s.%d",set_opt.pansketchpath, uniq_pan_prefix, c); 2024-05-23T10:36:05,151 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-05-23T10:36:05,151 command_set.c:166:29: warning: ‘%s’ directive writing 6 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2024-05-23T10:36:05,152 166 | sprintf(tmppath,"%s/%s.index.%d",set_opt.insketchpath,skch_prefix, c); 2024-05-23T10:36:05,152 | ^~ ~~~~~~~~~~~ 2024-05-23T10:36:05,152 command_set.c:166:9: note: ‘sprintf’ output between 16 and 281 bytes into a destination of size 256 2024-05-23T10:36:05,152 166 | sprintf(tmppath,"%s/%s.index.%d",set_opt.insketchpath,skch_prefix, c); 2024-05-23T10:36:05,152 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-05-23T10:36:05,152 command_set.c:170:29: warning: ‘%s’ directive writing 6 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2024-05-23T10:36:05,152 170 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,skch_prefix, c); 2024-05-23T10:36:05,152 | ^~ ~~~~~~~~~~~ 2024-05-23T10:36:05,153 command_set.c:170:9: note: ‘sprintf’ output between 10 and 275 bytes into a destination of size 256 2024-05-23T10:36:05,153 170 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,skch_prefix, c); 2024-05-23T10:36:05,153 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-05-23T10:36:05,153 command_set.c:175:29: warning: ‘%s’ directive writing 6 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2024-05-23T10:36:05,153 175 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,skch_prefix, c); 2024-05-23T10:36:05,153 | ^~ ~~~~~~~~~~~ 2024-05-23T10:36:05,153 command_set.c:175:9: note: ‘sprintf’ output between 10 and 275 bytes into a destination of size 256 2024-05-23T10:36:05,154 175 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,skch_prefix, c); 2024-05-23T10:36:05,154 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-05-23T10:36:05,154 command_set.c:188:29: warning: ‘%s’ directive writing 6 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2024-05-23T10:36:05,154 188 | sprintf(tmppath,"%s/%s.index.%d",set_opt.outdir,skch_prefix, c); 2024-05-23T10:36:05,154 | ^~ ~~~~~~~~~~~ 2024-05-23T10:36:05,154 command_set.c:188:9: note: ‘sprintf’ output between 16 and 281 bytes into a destination of size 256 2024-05-23T10:36:05,154 188 | sprintf(tmppath,"%s/%s.index.%d",set_opt.outdir,skch_prefix, c); 2024-05-23T10:36:05,154 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-05-23T10:36:05,155 command_set.c:193:27: warning: ‘sprintf’ may write a terminating nul past the end of the destination [-Wformat-overflow=] 2024-05-23T10:36:05,155 193 | sprintf(tmppath,"%s/%s",set_opt.outdir,co_dstat); 2024-05-23T10:36:05,155 | ^ 2024-05-23T10:36:05,155 command_set.c:193:5: note: ‘sprintf’ output 2 or more bytes (assuming 257) into a destination of size 256 2024-05-23T10:36:05,155 193 | sprintf(tmppath,"%s/%s",set_opt.outdir,co_dstat); 2024-05-23T10:36:05,155 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-05-23T10:36:05,302 command_set.c: In function ‘uniq_sketch_union’: 2024-05-23T10:36:05,302 command_set.c:235:27: warning: ‘sprintf’ may write a terminating nul past the end of the destination [-Wformat-overflow=] 2024-05-23T10:36:05,303 235 | sprintf(outpath,"%s/%s",set_opt.outdir,co_dstat); 2024-05-23T10:36:05,303 | ^ 2024-05-23T10:36:05,303 command_set.c:235:5: note: ‘sprintf’ output 2 or more bytes (assuming 257) into a destination of size 256 2024-05-23T10:36:05,303 235 | sprintf(outpath,"%s/%s",set_opt.outdir,co_dstat); 2024-05-23T10:36:05,303 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-05-23T10:36:05,303 command_set.c:248:29: warning: ‘%s’ directive writing 6 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2024-05-23T10:36:05,303 248 | sprintf(outpath,"%s/%s.%d",set_opt.insketchpath,skch_prefix,i); 2024-05-23T10:36:05,304 | ^~ ~~~~~~~~~~~ 2024-05-23T10:36:05,304 command_set.c:248:9: note: ‘sprintf’ output between 10 and 275 bytes into a destination of size 256 2024-05-23T10:36:05,304 248 | sprintf(outpath,"%s/%s.%d",set_opt.insketchpath,skch_prefix,i); 2024-05-23T10:36:05,304 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-05-23T10:36:05,304 command_set.c:260:29: warning: ‘%s’ directive writing 8 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2024-05-23T10:36:05,304 260 | sprintf(outpath,"%s/%s.%d",set_opt.outdir,uniq_pan_prefix,i); 2024-05-23T10:36:05,304 | ^~ ~~~~~~~~~~~~~~~ 2024-05-23T10:36:05,305 command_set.c:260:9: note: ‘sprintf’ output between 12 and 277 bytes into a destination of size 256 2024-05-23T10:36:05,305 260 | sprintf(outpath,"%s/%s.%d",set_opt.outdir,uniq_pan_prefix,i); 2024-05-23T10:36:05,305 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-05-23T10:36:05,429 command_set.c: In function ‘combin_pans’: 2024-05-23T10:36:05,429 command_set.c:298:29: warning: ‘%s’ directive writing 6 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2024-05-23T10:36:05,429 298 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,skch_prefix,c); 2024-05-23T10:36:05,429 | ^~ ~~~~~~~~~~~ 2024-05-23T10:36:05,429 command_set.c:298:25: note: directive argument in the range [0, 1073741823] 2024-05-23T10:36:05,429 298 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,skch_prefix,c); 2024-05-23T10:36:05,430 | ^~~~~~~~~~ 2024-05-23T10:36:05,430 command_set.c:298:9: note: ‘sprintf’ output between 10 and 274 bytes into a destination of size 256 2024-05-23T10:36:05,430 298 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,skch_prefix,c); 2024-05-23T10:36:05,430 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-05-23T10:36:05,430 command_set.c:301:29: warning: ‘%s’ directive writing 12 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2024-05-23T10:36:05,430 301 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,idx_prefix,c); 2024-05-23T10:36:05,430 | ^~ ~~~~~~~~~~ 2024-05-23T10:36:05,430 command_set.c:301:25: note: directive argument in the range [0, 1073741823] 2024-05-23T10:36:05,431 301 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,idx_prefix,c); 2024-05-23T10:36:05,431 | ^~~~~~~~~~ 2024-05-23T10:36:05,431 command_set.c:301:9: note: ‘sprintf’ output between 16 and 280 bytes into a destination of size 256 2024-05-23T10:36:05,431 301 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,idx_prefix,c); 2024-05-23T10:36:05,431 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-05-23T10:36:05,431 command_set.c:343:27: warning: ‘sprintf’ may write a terminating nul past the end of the destination [-Wformat-overflow=] 2024-05-23T10:36:05,431 343 | sprintf(tmppath,"%s/%s",set_opt.outdir,co_dstat); 2024-05-23T10:36:05,431 | ^ 2024-05-23T10:36:05,432 command_set.c:343:5: note: ‘sprintf’ output 2 or more bytes (assuming 257) into a destination of size 256 2024-05-23T10:36:05,432 343 | sprintf(tmppath,"%s/%s",set_opt.outdir,co_dstat); 2024-05-23T10:36:05,432 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-05-23T10:36:05,614 command_set.c: In function ‘combin_subset_pans’: 2024-05-23T10:36:05,614 command_set.c:470:29: warning: ‘%s’ directive writing 6 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2024-05-23T10:36:05,615 470 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,skch_prefix,c); 2024-05-23T10:36:05,615 | ^~ ~~~~~~~~~~~ 2024-05-23T10:36:05,615 command_set.c:470:9: note: ‘sprintf’ output between 10 and 275 bytes into a destination of size 256 2024-05-23T10:36:05,615 470 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,skch_prefix,c); 2024-05-23T10:36:05,615 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-05-23T10:36:05,615 command_set.c:476:29: warning: ‘%s’ directive writing 12 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2024-05-23T10:36:05,616 476 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,idx_prefix,c); 2024-05-23T10:36:05,616 | ^~ ~~~~~~~~~~ 2024-05-23T10:36:05,616 command_set.c:476:9: note: ‘sprintf’ output between 16 and 281 bytes into a destination of size 256 2024-05-23T10:36:05,616 476 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,idx_prefix,c); 2024-05-23T10:36:05,616 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-05-23T10:36:05,616 command_set.c:482:29: warning: ‘%s’ directive writing 6 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2024-05-23T10:36:05,616 482 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,skch_prefix,c); 2024-05-23T10:36:05,616 | ^~ ~~~~~~~~~~~ 2024-05-23T10:36:05,617 command_set.c:482:9: note: ‘sprintf’ output between 10 and 275 bytes into a destination of size 256 2024-05-23T10:36:05,617 482 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,skch_prefix,c); 2024-05-23T10:36:05,617 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-05-23T10:36:05,618 command_set.c:513:29: warning: ‘%s’ directive writing 12 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2024-05-23T10:36:05,618 513 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,idx_prefix,c); 2024-05-23T10:36:05,618 | ^~ ~~~~~~~~~~ 2024-05-23T10:36:05,619 command_set.c:513:9: note: ‘sprintf’ output between 16 and 281 bytes into a destination of size 256 2024-05-23T10:36:05,619 513 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,idx_prefix,c); 2024-05-23T10:36:05,619 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-05-23T10:36:05,619 command_set.c:524:27: warning: ‘sprintf’ may write a terminating nul past the end of the destination [-Wformat-overflow=] 2024-05-23T10:36:05,619 524 | sprintf(tmppath,"%s/%s",set_opt.outdir,co_dstat); 2024-05-23T10:36:05,619 | ^ 2024-05-23T10:36:05,619 command_set.c:524:5: note: ‘sprintf’ output 2 or more bytes (assuming 257) into a destination of size 256 2024-05-23T10:36:05,620 524 | sprintf(tmppath,"%s/%s",set_opt.outdir,co_dstat); 2024-05-23T10:36:05,620 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-05-23T10:36:05,821 command_set.c: In function ‘grouping_genomes’: 2024-05-23T10:36:05,822 command_set.c:575:29: warning: ‘%s’ directive writing 6 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2024-05-23T10:36:05,822 575 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,skch_prefix,c); 2024-05-23T10:36:05,822 | ^~ ~~~~~~~~~~~ 2024-05-23T10:36:05,822 command_set.c:575:9: note: ‘sprintf’ output between 10 and 275 bytes into a destination of size 256 2024-05-23T10:36:05,822 575 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,skch_prefix,c); 2024-05-23T10:36:05,822 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-05-23T10:36:05,823 command_set.c:581:29: warning: ‘%s’ directive writing 12 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2024-05-23T10:36:05,823 581 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,idx_prefix,c); 2024-05-23T10:36:05,823 | ^~ ~~~~~~~~~~ 2024-05-23T10:36:05,823 command_set.c:581:9: note: ‘sprintf’ output between 16 and 281 bytes into a destination of size 256 2024-05-23T10:36:05,823 581 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,idx_prefix,c); 2024-05-23T10:36:05,823 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-05-23T10:36:05,825 command_set.c:613:29: warning: ‘%s’ directive writing 6 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2024-05-23T10:36:05,825 613 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,skch_prefix,c); 2024-05-23T10:36:05,825 | ^~ ~~~~~~~~~~~ 2024-05-23T10:36:05,825 command_set.c:613:9: note: ‘sprintf’ output between 10 and 275 bytes into a destination of size 256 2024-05-23T10:36:05,826 613 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,skch_prefix,c); 2024-05-23T10:36:05,826 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-05-23T10:36:05,826 command_set.c:635:29: warning: ‘%s’ directive writing 12 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2024-05-23T10:36:05,826 635 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,idx_prefix,c); 2024-05-23T10:36:05,827 | ^~ ~~~~~~~~~~ 2024-05-23T10:36:05,827 command_set.c:635:9: note: ‘sprintf’ output between 16 and 281 bytes into a destination of size 256 2024-05-23T10:36:05,827 635 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,idx_prefix,c); 2024-05-23T10:36:05,827 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-05-23T10:36:05,827 command_set.c:646:27: warning: ‘sprintf’ may write a terminating nul past the end of the destination [-Wformat-overflow=] 2024-05-23T10:36:05,828 646 | sprintf(tmppath,"%s/%s",set_opt.outdir,co_dstat); 2024-05-23T10:36:05,828 | ^ 2024-05-23T10:36:05,828 command_set.c:646:5: note: ‘sprintf’ output 2 or more bytes (assuming 257) into a destination of size 256 2024-05-23T10:36:05,828 646 | sprintf(tmppath,"%s/%s",set_opt.outdir,co_dstat); 2024-05-23T10:36:05,828 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-05-23T10:36:06,108 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ikssdheaders -I/usr/include/python3.9 -c command_shuffle.c -o build/temp.linux-armv7l-cpython-39/command_shuffle.o -fopenmp 2024-05-23T10:36:06,387 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ikssdheaders -I/usr/include/python3.9 -c global_basic.c -o build/temp.linux-armv7l-cpython-39/global_basic.o -fopenmp 2024-05-23T10:36:06,533 global_basic.c: In function ‘organize_infile_list’: 2024-05-23T10:36:06,534 global_basic.c:195:20: warning: implicit declaration of function ‘isspace’ [-Wimplicit-function-declaration] 2024-05-23T10:36:06,534 195 | while (isspace(*buf)) buf++; 2024-05-23T10:36:06,534 | ^~~~~~~ 2024-05-23T10:36:06,535 global_basic.c:201:69: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 6 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 2024-05-23T10:36:06,535 201 | "the input list: %s\n %dth line: %s has %lu characters exceed the maximal allowed length %d", 2024-05-23T10:36:06,535 | ~~^ 2024-05-23T10:36:06,535 | | 2024-05-23T10:36:06,536 | long unsigned int 2024-05-23T10:36:06,536 | %u 2024-05-23T10:36:06,536 202 | list_path, file_num, buf, strlen(buf), PATHLEN); 2024-05-23T10:36:06,536 | ~~~~~~~~~~~ 2024-05-23T10:36:06,536 | | 2024-05-23T10:36:06,536 | size_t {aka unsigned int} 2024-05-23T10:36:06,538 global_basic.c:233:69: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 6 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 2024-05-23T10:36:06,538 233 | "the input list: %s\n %dth line: %s has %lu characters exceed the maximal allowed length %d", 2024-05-23T10:36:06,538 | ~~^ 2024-05-23T10:36:06,538 | | 2024-05-23T10:36:06,538 | long unsigned int 2024-05-23T10:36:06,538 | %u 2024-05-23T10:36:06,538 234 | list_path, file_num, buf, strlen(buf), PATHLEN); 2024-05-23T10:36:06,539 | ~~~~~~~~~~~ 2024-05-23T10:36:06,539 | | 2024-05-23T10:36:06,539 | size_t {aka unsigned int} 2024-05-23T10:36:07,211 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ikssdheaders -I/usr/include/python3.9 -c iseq2comem.c -o build/temp.linux-armv7l-cpython-39/iseq2comem.o -fopenmp 2024-05-23T10:36:07,363 iseq2comem.c: In function ‘reads2mco’: 2024-05-23T10:36:07,363 iseq2comem.c:156:18: warning: comparison of integer expressions of different signedness: ‘llong’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare] 2024-05-23T10:36:07,363 156 | if (base > TL) { 2024-05-23T10:36:07,364 | ^ 2024-05-23T10:36:07,364 iseq2comem.c:160:26: warning: comparison of integer expressions of different signedness: ‘llong’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare] 2024-05-23T10:36:07,364 160 | if ((pfilter >= dim_end) || (pfilter < dim_start)) continue; 2024-05-23T10:36:07,364 | ^~ 2024-05-23T10:36:07,365 iseq2comem.c:160:50: warning: comparison of integer expressions of different signedness: ‘llong’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare] 2024-05-23T10:36:07,365 160 | if ((pfilter >= dim_end) || (pfilter < dim_start)) continue; 2024-05-23T10:36:07,365 | ^ 2024-05-23T10:36:07,367 iseq2comem.c: In function ‘fasta2co’: 2024-05-23T10:36:07,368 iseq2comem.c:239:18: warning: comparison of integer expressions of different signedness: ‘llong’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare] 2024-05-23T10:36:07,368 239 | if (base > TL) { 2024-05-23T10:36:07,368 | ^ 2024-05-23T10:36:07,368 iseq2comem.c:243:26: warning: comparison of integer expressions of different signedness: ‘llong’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare] 2024-05-23T10:36:07,368 243 | if ((pfilter >= dim_end) || (pfilter < dim_start)) continue; 2024-05-23T10:36:07,369 | ^~ 2024-05-23T10:36:07,369 iseq2comem.c:243:50: warning: comparison of integer expressions of different signedness: ‘llong’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare] 2024-05-23T10:36:07,369 243 | if ((pfilter >= dim_end) || (pfilter < dim_start)) continue; 2024-05-23T10:36:07,369 | ^ 2024-05-23T10:36:07,370 iseq2comem.c: In function ‘fastq2co’: 2024-05-23T10:36:07,371 iseq2comem.c:272:11: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long long unsigned int’ [-Wsign-compare] 2024-05-23T10:36:07,371 272 | if (M >= CT_MAX) fprintf(stderr, "fastq2co(): Occurence num should smaller than %d", (int) CT_MAX); 2024-05-23T10:36:07,371 | ^~ 2024-05-23T10:36:07,372 iseq2comem.c:318:18: warning: comparison of integer expressions of different signedness: ‘llong’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare] 2024-05-23T10:36:07,373 318 | if (base > TL) { 2024-05-23T10:36:07,373 | ^ 2024-05-23T10:36:07,373 iseq2comem.c:322:26: warning: comparison of integer expressions of different signedness: ‘llong’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare] 2024-05-23T10:36:07,373 322 | if ((pfilter >= dim_end) || (pfilter < dim_start)) continue; 2024-05-23T10:36:07,374 | ^~ 2024-05-23T10:36:07,374 iseq2comem.c:322:50: warning: comparison of integer expressions of different signedness: ‘llong’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare] 2024-05-23T10:36:07,374 322 | if ((pfilter >= dim_end) || (pfilter < dim_start)) continue; 2024-05-23T10:36:07,374 | ^ 2024-05-23T10:36:07,376 iseq2comem.c:341:44: warning: comparison of integer expressions of different signedness: ‘long long unsigned int’ and ‘int’ [-Wsign-compare] 2024-05-23T10:36:07,376 341 | if (!((co[n] & CT_MAX) < M)) co[n] |= CT_MAX; 2024-05-23T10:36:07,376 | ^ 2024-05-23T10:36:07,378 iseq2comem.c: In function ‘fastq2koc’: 2024-05-23T10:36:07,378 iseq2comem.c:402:18: warning: comparison of integer expressions of different signedness: ‘llong’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare] 2024-05-23T10:36:07,378 402 | if (base > TL) { 2024-05-23T10:36:07,378 | ^ 2024-05-23T10:36:07,379 iseq2comem.c:406:26: warning: comparison of integer expressions of different signedness: ‘llong’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare] 2024-05-23T10:36:07,379 406 | if ((pfilter >= dim_end) || (pfilter < dim_start)) continue; 2024-05-23T10:36:07,379 | ^~ 2024-05-23T10:36:07,380 iseq2comem.c:406:50: warning: comparison of integer expressions of different signedness: ‘llong’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare] 2024-05-23T10:36:07,380 406 | if ((pfilter >= dim_end) || (pfilter < dim_start)) continue; 2024-05-23T10:36:07,380 | ^ 2024-05-23T10:36:07,386 iseq2comem.c: In function ‘mt_shortreads2koc’: 2024-05-23T10:36:07,386 iseq2comem.c:582:34: warning: comparison of integer expressions of different signedness: ‘llong’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare] 2024-05-23T10:36:07,386 582 | if ((pfilter >= dim_end) || (pfilter < dim_start)) continue; 2024-05-23T10:36:07,387 | ^~ 2024-05-23T10:36:07,387 iseq2comem.c:582:58: warning: comparison of integer expressions of different signedness: ‘llong’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare] 2024-05-23T10:36:07,387 582 | if ((pfilter >= dim_end) || (pfilter < dim_start)) continue; 2024-05-23T10:36:07,387 | ^ 2024-05-23T10:36:08,555 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ikssdheaders -I/usr/include/python3.9 -c mman.c -o build/temp.linux-armv7l-cpython-39/mman.o -fopenmp 2024-05-23T10:36:08,620 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ikssdheaders -I/usr/include/python3.9 -c mytime.c -o build/temp.linux-armv7l-cpython-39/mytime.o -fopenmp 2024-05-23T10:36:08,742 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ikssdheaders -I/usr/include/python3.9 -c pykssd.c -o build/temp.linux-armv7l-cpython-39/pykssd.o -fopenmp 2024-05-23T10:36:09,059 pykssd.c: In function ‘py_dist_dispatch’: 2024-05-23T10:36:09,059 pykssd.c:304:13: warning: unused variable ‘state1’ [-Wunused-variable] 2024-05-23T10:36:09,059 304 | int state1 = dist_dispatch(&dist_opt_val1); 2024-05-23T10:36:09,059 | ^~~~~~ 2024-05-23T10:36:09,060 pykssd.c:361:13: warning: unused variable ‘state2’ [-Wunused-variable] 2024-05-23T10:36:09,060 361 | int state2 = dist_dispatch(&dist_opt_val2); 2024-05-23T10:36:09,060 | ^~~~~~ 2024-05-23T10:36:09,061 pykssd.c:480:13: warning: unused variable ‘state4’ [-Wunused-variable] 2024-05-23T10:36:09,061 480 | int state4 = dist_dispatch(&dist_opt_val4); 2024-05-23T10:36:09,061 | ^~~~~~ 2024-05-23T10:36:09,199 pykssd.c: In function ‘rename_file’: 2024-05-23T10:36:09,200 pykssd.c:44:15: warning: ‘strncpy’ specified bound depends on the length of the source argument [-Wstringop-overflow=] 2024-05-23T10:36:09,200 44 | newfile = strncpy(newfile, p1, len - suffix_len); 2024-05-23T10:36:09,200 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-05-23T10:36:09,200 pykssd.c:41:15: note: length computed here 2024-05-23T10:36:09,200 41 | int len = strlen(p1); 2024-05-23T10:36:09,200 | ^~~~~~~~~~ 2024-05-23T10:36:09,568 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/co2mco.o build/temp.linux-armv7l-cpython-39/command_composite.o build/temp.linux-armv7l-cpython-39/command_dist.o build/temp.linux-armv7l-cpython-39/command_dist_wrapper.o build/temp.linux-armv7l-cpython-39/command_set.o build/temp.linux-armv7l-cpython-39/command_shuffle.o build/temp.linux-armv7l-cpython-39/global_basic.o build/temp.linux-armv7l-cpython-39/iseq2comem.o build/temp.linux-armv7l-cpython-39/mman.o build/temp.linux-armv7l-cpython-39/mytime.o build/temp.linux-armv7l-cpython-39/pykssd.o -L/usr/lib -lz -o build/lib.linux-armv7l-cpython-39/kssd.cpython-39-arm-linux-gnueabihf.so -fopenmp 2024-05-23T10:36:09,784 building 'nj' extension 2024-05-23T10:36:09,785 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Injheaders -I/usr/include/python3.9 -c align.c -o build/temp.linux-armv7l-cpython-39/align.o 2024-05-23T10:36:10,217 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Injheaders -I/usr/include/python3.9 -c buildtree.c -o build/temp.linux-armv7l-cpython-39/buildtree.o 2024-05-23T10:36:10,393 buildtree.c: In function ‘UPGMA_buildtree’: 2024-05-23T10:36:10,393 buildtree.c:716:26: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2024-05-23T10:36:10,393 716 | if (min_of_row_idx[m] == minj || min_of_row_idx[m] == mini) { 2024-05-23T10:36:10,393 | ^~ 2024-05-23T10:36:10,394 buildtree.c:716:55: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2024-05-23T10:36:10,394 716 | if (min_of_row_idx[m] == minj || min_of_row_idx[m] == mini) { 2024-05-23T10:36:10,394 | ^~ 2024-05-23T10:36:10,961 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Injheaders -I/usr/include/python3.9 -c cluster.c -o build/temp.linux-armv7l-cpython-39/cluster.o 2024-05-23T10:36:11,284 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Injheaders -I/usr/include/python3.9 -c distancemat.c -o build/temp.linux-armv7l-cpython-39/distancemat.o 2024-05-23T10:36:11,402 distancemat.c: In function ‘clone_DistanceMatrix’: 2024-05-23T10:36:11,403 distancemat.c:226:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2024-05-23T10:36:11,403 226 | for( i=0; i < dest->size; i++) { 2024-05-23T10:36:11,403 | ^ 2024-05-23T10:36:11,403 distancemat.c: In function ‘empty_DistanceMatrix’: 2024-05-23T10:36:11,404 distancemat.c:260:15: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2024-05-23T10:36:11,404 260 | for( i=0; i < mat->size; i++) { 2024-05-23T10:36:11,404 | ^ 2024-05-23T10:36:11,405 distancemat.c: In function ‘print_DistanceMatrix’: 2024-05-23T10:36:11,406 distancemat.c:349:18: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2024-05-23T10:36:11,406 349 | for(row=0; row < mat->size; row++) { 2024-05-23T10:36:11,406 | ^ 2024-05-23T10:36:11,407 distancemat.c: In function ‘read_phylip_DistanceMatrix’: 2024-05-23T10:36:11,407 distancemat.c:410:11: warning: suggest parentheses around assignment used as truth value [-Wparentheses] 2024-05-23T10:36:11,407 410 | while(c = fgetc(handle)) { 2024-05-23T10:36:11,408 | ^ 2024-05-23T10:36:11,749 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Injheaders -I/usr/include/python3.9 -c pynj.c -o build/temp.linux-armv7l-cpython-39/pynj.o 2024-05-23T10:36:12,129 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Injheaders -I/usr/include/python3.9 -c sequence.c -o build/temp.linux-armv7l-cpython-39/sequence.o 2024-05-23T10:36:12,354 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Injheaders -I/usr/include/python3.9 -c tree.c -o build/temp.linux-armv7l-cpython-39/tree.o 2024-05-23T10:36:13,048 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Injheaders -I/usr/include/python3.9 -c util.c -o build/temp.linux-armv7l-cpython-39/util.o 2024-05-23T10:36:13,220 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/align.o build/temp.linux-armv7l-cpython-39/buildtree.o build/temp.linux-armv7l-cpython-39/cluster.o build/temp.linux-armv7l-cpython-39/distancemat.o build/temp.linux-armv7l-cpython-39/pynj.o build/temp.linux-armv7l-cpython-39/sequence.o build/temp.linux-armv7l-cpython-39/tree.o build/temp.linux-armv7l-cpython-39/util.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/nj.cpython-39-arm-linux-gnueabihf.so 2024-05-23T10:36:13,336 building 'dnj' extension 2024-05-23T10:36:13,338 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Idnjheaders -I/usr/include/python3.9 -c bytescale.c -o build/temp.linux-armv7l-cpython-39/bytescale.o -fopenmp 2024-05-23T10:36:13,405 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Idnjheaders -I/usr/include/python3.9 -c dnj.c -o build/temp.linux-armv7l-cpython-39/dnj.o -fopenmp 2024-05-23T10:36:13,526 dnj.c: In function ‘minQpair’: 2024-05-23T10:36:13,526 dnj.c:70:13: warning: left shift count >= width of type [-Wshift-count-overflow] 2024-05-23T10:36:13,526 70 | pos <<= sizeof(unsigned) * 8; 2024-05-23T10:36:13,526 | ^~~ 2024-05-23T10:36:13,527 dnj.c:126:21: warning: left shift count >= width of type [-Wshift-count-overflow] 2024-05-23T10:36:13,527 126 | pos <<= sizeof(unsigned) * 8; 2024-05-23T10:36:13,527 | ^~~ 2024-05-23T10:36:13,528 dnj.c: In function ‘maxQpair’: 2024-05-23T10:36:13,528 dnj.c:157:13: warning: left shift count >= width of type [-Wshift-count-overflow] 2024-05-23T10:36:13,528 157 | pos <<= sizeof(unsigned) * 8; 2024-05-23T10:36:13,528 | ^~~ 2024-05-23T10:36:13,528 dnj.c:213:21: warning: left shift count >= width of type [-Wshift-count-overflow] 2024-05-23T10:36:13,529 213 | pos <<= sizeof(unsigned) * 8; 2024-05-23T10:36:13,529 | ^~~ 2024-05-23T10:36:13,529 dnj.c: In function ‘UPGMApair’: 2024-05-23T10:36:13,529 dnj.c:237:13: warning: left shift count >= width of type [-Wshift-count-overflow] 2024-05-23T10:36:13,529 237 | pos <<= sizeof(unsigned) * 8; 2024-05-23T10:36:13,529 | ^~~ 2024-05-23T10:36:13,530 dnj.c:284:25: warning: left shift count >= width of type [-Wshift-count-overflow] 2024-05-23T10:36:13,530 284 | pos <<= sizeof(unsigned) * 8; 2024-05-23T10:36:13,530 | ^~~ 2024-05-23T10:36:13,530 dnj.c:291:21: warning: left shift count >= width of type [-Wshift-count-overflow] 2024-05-23T10:36:13,531 291 | pos <<= sizeof(unsigned) * 8; 2024-05-23T10:36:13,531 | ^~~ 2024-05-23T10:36:13,531 dnj.c: In function ‘minQrow’: 2024-05-23T10:36:13,532 dnj.c:374:17: warning: left shift count >= width of type [-Wshift-count-overflow] 2024-05-23T10:36:13,532 374 | pos <<= sizeof(unsigned) * 8; 2024-05-23T10:36:13,532 | ^~~ 2024-05-23T10:36:13,533 dnj.c: In function ‘maxQrow’: 2024-05-23T10:36:13,533 dnj.c:435:17: warning: left shift count >= width of type [-Wshift-count-overflow] 2024-05-23T10:36:13,533 435 | pos <<= sizeof(unsigned) * 8; 2024-05-23T10:36:13,533 | ^~~ 2024-05-23T10:36:13,534 dnj.c: In function ‘UPGMArow’: 2024-05-23T10:36:13,534 dnj.c:488:21: warning: left shift count >= width of type [-Wshift-count-overflow] 2024-05-23T10:36:13,534 488 | pos <<= sizeof(unsigned) * 8; 2024-05-23T10:36:13,535 | ^~~ 2024-05-23T10:36:13,535 dnj.c:494:17: warning: left shift count >= width of type [-Wshift-count-overflow] 2024-05-23T10:36:13,535 494 | pos <<= sizeof(unsigned) * 8; 2024-05-23T10:36:13,535 | ^~~ 2024-05-23T10:36:13,536 dnj.c: In function ‘minQ_thread’: 2024-05-23T10:36:13,536 dnj.c:553:17: warning: left shift count >= width of type [-Wshift-count-overflow] 2024-05-23T10:36:13,536 553 | pos <<= sizeof(unsigned) * 8; 2024-05-23T10:36:13,536 | ^~~ 2024-05-23T10:36:14,710 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Idnjheaders -I/usr/include/python3.9 -c filebuff.c -o build/temp.linux-armv7l-cpython-39/filebuff.o -fopenmp 2024-05-23T10:36:14,816 filebuff.c: In function ‘BuffgzFileBuff’: 2024-05-23T10:36:14,817 filebuff.c:99:47: warning: comparison of integer expressions of different signedness: ‘uInt’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2024-05-23T10:36:14,817 99 | if(status == Z_STREAM_END && strm->avail_out == dest->buffSize) { 2024-05-23T10:36:14,817 | ^~ 2024-05-23T10:36:15,099 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Idnjheaders -I/usr/include/python3.9 -c hclust.c -o build/temp.linux-armv7l-cpython-39/hclust.o -fopenmp 2024-05-23T10:36:15,218 hclust.c: In function ‘minQ’: 2024-05-23T10:36:15,218 hclust.c:364:12: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2024-05-23T10:36:15,218 364 | while(++i < Q->n) { 2024-05-23T10:36:15,219 | ^ 2024-05-23T10:36:15,219 hclust.c:377:6: warning: left shift count >= width of type [-Wshift-count-overflow] 2024-05-23T10:36:15,219 377 | pos <<= sizeof(unsigned) * 8; 2024-05-23T10:36:15,219 | ^~~ 2024-05-23T10:36:15,220 hclust.c: In function ‘maxQ’: 2024-05-23T10:36:15,220 hclust.c:394:12: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2024-05-23T10:36:15,220 394 | while(++i < Q->n) { 2024-05-23T10:36:15,220 | ^ 2024-05-23T10:36:15,221 hclust.c:407:6: warning: left shift count >= width of type [-Wshift-count-overflow] 2024-05-23T10:36:15,221 407 | pos <<= sizeof(unsigned) * 8; 2024-05-23T10:36:15,221 | ^~~ 2024-05-23T10:36:17,255 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Idnjheaders -I/usr/include/python3.9 -c matrix.c -o build/temp.linux-armv7l-cpython-39/matrix.o -fopenmp 2024-05-23T10:36:17,377 matrix.c: In function ‘ltdMatrix_popArrange’: 2024-05-23T10:36:17,377 matrix.c:538:9: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2024-05-23T10:36:17,377 538 | if(pos != n) { 2024-05-23T10:36:17,377 | ^~ 2024-05-23T10:36:18,126 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Idnjheaders -I/usr/include/python3.9 -c mman.c -o build/temp.linux-armv7l-cpython-39/mman.o -fopenmp 2024-05-23T10:36:18,190 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Idnjheaders -I/usr/include/python3.9 -c nj.c -o build/temp.linux-armv7l-cpython-39/nj.o -fopenmp 2024-05-23T10:36:18,308 nj.c: In function ‘initQ’: 2024-05-23T10:36:18,309 nj.c:243:6: warning: left shift count >= width of type [-Wshift-count-overflow] 2024-05-23T10:36:18,309 243 | pos <<= sizeof(unsigned) * 8; 2024-05-23T10:36:18,309 | ^~~ 2024-05-23T10:36:18,310 nj.c: In function ‘initQ_MN’: 2024-05-23T10:36:18,310 nj.c:358:6: warning: left shift count >= width of type [-Wshift-count-overflow] 2024-05-23T10:36:18,311 358 | pos <<= sizeof(unsigned) * 8; 2024-05-23T10:36:18,311 | ^~~ 2024-05-23T10:36:18,314 nj.c: In function ‘minD’: 2024-05-23T10:36:18,314 nj.c:559:6: warning: left shift count >= width of type [-Wshift-count-overflow] 2024-05-23T10:36:18,314 559 | pos <<= sizeof(unsigned) * 8; 2024-05-23T10:36:18,314 | ^~~ 2024-05-23T10:36:18,316 nj.c: In function ‘maxD’: 2024-05-23T10:36:18,316 nj.c:642:6: warning: left shift count >= width of type [-Wshift-count-overflow] 2024-05-23T10:36:18,316 642 | pos <<= sizeof(unsigned) * 8; 2024-05-23T10:36:18,316 | ^~~ 2024-05-23T10:36:18,319 nj.c: In function ‘minPair’: 2024-05-23T10:36:18,319 nj.c:826:6: warning: left shift count >= width of type [-Wshift-count-overflow] 2024-05-23T10:36:18,320 826 | pos <<= sizeof(unsigned) * 8; 2024-05-23T10:36:18,320 | ^~~ 2024-05-23T10:36:20,343 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Idnjheaders -I/usr/include/python3.9 -c nwck.c -o build/temp.linux-armv7l-cpython-39/nwck.o -fopenmp 2024-05-23T10:36:20,813 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Idnjheaders -I/usr/include/python3.9 -c pherror.c -o build/temp.linux-armv7l-cpython-39/pherror.o -fopenmp 2024-05-23T10:36:20,896 pherror.c: In function ‘cfread’: 2024-05-23T10:36:20,897 pherror.c:58:35: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2024-05-23T10:36:20,897 58 | } else if(nmemb == 0 || (nmemb == -1 && (errno & EAGAIN))) { 2024-05-23T10:36:20,897 | ^~ 2024-05-23T10:36:20,991 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Idnjheaders -I/usr/include/python3.9 -c phy.c -o build/temp.linux-armv7l-cpython-39/phy.o -fopenmp 2024-05-23T10:36:21,915 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Idnjheaders -I/usr/include/python3.9 -c pydnj.c -o build/temp.linux-armv7l-cpython-39/pydnj.o -fopenmp 2024-05-23T10:36:22,214 In file included from pydnj.c:11: 2024-05-23T10:36:22,214 dnjheaders/pherror.h:20: warning: "_XOPEN_SOURCE" redefined 2024-05-23T10:36:22,214 20 | #define _XOPEN_SOURCE 600 2024-05-23T10:36:22,214 | 2024-05-23T10:36:22,215 In file included from /usr/include/arm-linux-gnueabihf/bits/libc-header-start.h:33, 2024-05-23T10:36:22,215 from /usr/include/limits.h:26, 2024-05-23T10:36:22,215 from /usr/lib/gcc/arm-linux-gnueabihf/10/include/limits.h:195, 2024-05-23T10:36:22,215 from /usr/lib/gcc/arm-linux-gnueabihf/10/include/syslimits.h:7, 2024-05-23T10:36:22,215 from /usr/lib/gcc/arm-linux-gnueabihf/10/include/limits.h:34, 2024-05-23T10:36:22,215 from /usr/include/python3.9/Python.h:11, 2024-05-23T10:36:22,216 from pydnj.c:1: 2024-05-23T10:36:22,216 /usr/include/features.h:207: note: this is the location of the previous definition 2024-05-23T10:36:22,216 207 | # define _XOPEN_SOURCE 700 2024-05-23T10:36:22,216 | 2024-05-23T10:36:22,229 pydnj.c: In function ‘py_build’: 2024-05-23T10:36:22,229 pydnj.c:165:9: warning: implicit declaration of function ‘omp_get_num_procs’ [-Wimplicit-function-declaration] 2024-05-23T10:36:22,229 165 | p = omp_get_num_procs(); 2024-05-23T10:36:22,229 | ^~~~~~~~~~~~~~~~~ 2024-05-23T10:36:22,445 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Idnjheaders -I/usr/include/python3.9 -c qseqs.c -o build/temp.linux-armv7l-cpython-39/qseqs.o -fopenmp 2024-05-23T10:36:22,635 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Idnjheaders -I/usr/include/python3.9 -c str.c -o build/temp.linux-armv7l-cpython-39/str.o -fopenmp 2024-05-23T10:36:22,743 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Idnjheaders -I/usr/include/python3.9 -c tmp.c -o build/temp.linux-armv7l-cpython-39/tmp.o -fopenmp 2024-05-23T10:36:22,935 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Idnjheaders -I/usr/include/python3.9 -c vector.c -o build/temp.linux-armv7l-cpython-39/vector.o -fopenmp 2024-05-23T10:36:23,086 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/bytescale.o build/temp.linux-armv7l-cpython-39/dnj.o build/temp.linux-armv7l-cpython-39/filebuff.o build/temp.linux-armv7l-cpython-39/hclust.o build/temp.linux-armv7l-cpython-39/matrix.o build/temp.linux-armv7l-cpython-39/mman.o build/temp.linux-armv7l-cpython-39/nj.o build/temp.linux-armv7l-cpython-39/nwck.o build/temp.linux-armv7l-cpython-39/pherror.o build/temp.linux-armv7l-cpython-39/phy.o build/temp.linux-armv7l-cpython-39/pydnj.o build/temp.linux-armv7l-cpython-39/qseqs.o build/temp.linux-armv7l-cpython-39/str.o build/temp.linux-armv7l-cpython-39/tmp.o build/temp.linux-armv7l-cpython-39/vector.o -L/usr/lib -lz -o build/lib.linux-armv7l-cpython-39/dnj.cpython-39-arm-linux-gnueabihf.so -fopenmp 2024-05-23T10:36:23,261 /usr/local/lib/python3.9/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. 2024-05-23T10:36:23,262 !! 2024-05-23T10:36:23,262 ******************************************************************************** 2024-05-23T10:36:23,262 Please avoid running ``setup.py`` directly. 2024-05-23T10:36:23,262 Instead, use pypa/build, pypa/installer or other 2024-05-23T10:36:23,262 standards-based tools. 2024-05-23T10:36:23,263 See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. 2024-05-23T10:36:23,263 ******************************************************************************** 2024-05-23T10:36:23,263 !! 2024-05-23T10:36:23,263 self.initialize_options() 2024-05-23T10:36:23,284 installing to build/bdist.linux-armv7l/wheel 2024-05-23T10:36:23,285 running install 2024-05-23T10:36:23,310 running install_lib 2024-05-23T10:36:23,334 creating build/bdist.linux-armv7l 2024-05-23T10:36:23,334 creating build/bdist.linux-armv7l/wheel 2024-05-23T10:36:23,335 copying build/lib.linux-armv7l-cpython-39/kssd.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel 2024-05-23T10:36:23,343 copying build/lib.linux-armv7l-cpython-39/kssdtree.py -> build/bdist.linux-armv7l/wheel 2024-05-23T10:36:23,346 copying build/lib.linux-armv7l-cpython-39/nj.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel 2024-05-23T10:36:23,351 copying build/lib.linux-armv7l-cpython-39/toolutils.py -> build/bdist.linux-armv7l/wheel 2024-05-23T10:36:23,354 copying build/lib.linux-armv7l-cpython-39/dnj.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel 2024-05-23T10:36:23,364 running install_egg_info 2024-05-23T10:36:23,398 Copying kssdtree.egg-info to build/bdist.linux-armv7l/wheel/kssdtree-1.1.4-py3.9.egg-info 2024-05-23T10:36:23,411 running install_scripts 2024-05-23T10:36:23,431 creating build/bdist.linux-armv7l/wheel/kssdtree-1.1.4.dist-info/WHEEL 2024-05-23T10:36:23,433 creating '/tmp/pip-wheel-jc2a0fvf/kssdtree-1.1.4-cp39-cp39-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2024-05-23T10:36:23,512 adding 'dnj.cpython-39-arm-linux-gnueabihf.so' 2024-05-23T10:36:23,608 adding 'kssd.cpython-39-arm-linux-gnueabihf.so' 2024-05-23T10:36:23,612 adding 'kssdtree.py' 2024-05-23T10:36:23,634 adding 'nj.cpython-39-arm-linux-gnueabihf.so' 2024-05-23T10:36:23,637 adding 'toolutils.py' 2024-05-23T10:36:23,639 adding 'kssdtree-1.1.4.dist-info/METADATA' 2024-05-23T10:36:23,640 adding 'kssdtree-1.1.4.dist-info/WHEEL' 2024-05-23T10:36:23,641 adding 'kssdtree-1.1.4.dist-info/dependency_links.txt' 2024-05-23T10:36:23,642 adding 'kssdtree-1.1.4.dist-info/top_level.txt' 2024-05-23T10:36:23,643 adding 'kssdtree-1.1.4.dist-info/RECORD' 2024-05-23T10:36:23,651 removing build/bdist.linux-armv7l/wheel 2024-05-23T10:36:23,791 Building wheel for kssdtree (setup.py): finished with status 'done' 2024-05-23T10:36:23,798 Created wheel for kssdtree: filename=kssdtree-1.1.4-cp39-cp39-linux_armv7l.whl size=375675 sha256=34527068d84569095aefee41a353c5dfc0dfa55b68097890da9a1eca2ee9b726 2024-05-23T10:36:23,799 Stored in directory: /tmp/pip-ephem-wheel-cache-k9wthji8/wheels/38/50/be/1c2640b9a7f0dcc78eb2f3c60c5e3934d2e9916ff962efc78c 2024-05-23T10:36:23,809 Successfully built kssdtree 2024-05-23T10:36:23,825 Removed build tracker: '/tmp/pip-build-tracker-k7w55h3u'