2024-05-24T09:19:21,924 Created temporary directory: /tmp/pip-build-tracker-9iksr92s 2024-05-24T09:19:21,925 Initialized build tracking at /tmp/pip-build-tracker-9iksr92s 2024-05-24T09:19:21,926 Created build tracker: /tmp/pip-build-tracker-9iksr92s 2024-05-24T09:19:21,926 Entered build tracker: /tmp/pip-build-tracker-9iksr92s 2024-05-24T09:19:21,927 Created temporary directory: /tmp/pip-wheel-ktycbhol 2024-05-24T09:19:21,930 Created temporary directory: /tmp/pip-ephem-wheel-cache-ygo8jtit 2024-05-24T09:19:21,952 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2024-05-24T09:19:21,956 2 location(s) to search for versions of pdbeccdutils: 2024-05-24T09:19:21,956 * https://pypi.org/simple/pdbeccdutils/ 2024-05-24T09:19:21,956 * https://www.piwheels.org/simple/pdbeccdutils/ 2024-05-24T09:19:21,957 Fetching project page and analyzing links: https://pypi.org/simple/pdbeccdutils/ 2024-05-24T09:19:21,957 Getting page https://pypi.org/simple/pdbeccdutils/ 2024-05-24T09:19:21,959 Found index url https://pypi.org/simple/ 2024-05-24T09:19:22,175 Fetched page https://pypi.org/simple/pdbeccdutils/ as application/vnd.pypi.simple.v1+json 2024-05-24T09:19:22,181 Skipping link: No binaries permitted for pdbeccdutils: https://files.pythonhosted.org/packages/a6/6b/1b0cbfa7ebeac876b55eb4a141bcacd9b831221ff0fccd8d10882071f444/pdbeccdutils-0.5.5-py3-none-any.whl (from https://pypi.org/simple/pdbeccdutils/) (requires-python:>=3.6) 2024-05-24T09:19:22,181 Skipping link: No binaries permitted for pdbeccdutils: https://files.pythonhosted.org/packages/04/62/f38851eebf9825f8452f976361057f14d5e61b3facdcd94b85c37b279c31/pdbeccdutils-0.5.6-py3-none-any.whl (from https://pypi.org/simple/pdbeccdutils/) (requires-python:>=3.6) 2024-05-24T09:19:22,182 Skipping link: No binaries permitted for pdbeccdutils: https://files.pythonhosted.org/packages/1b/74/321adb72be60f4f3ee1b9c1d8d3bf795b392d009871546fb12cba3a26eab/pdbeccdutils-0.5.7-py3-none-any.whl (from https://pypi.org/simple/pdbeccdutils/) (requires-python:>=3.6) 2024-05-24T09:19:22,182 Skipping link: No binaries permitted for pdbeccdutils: https://files.pythonhosted.org/packages/be/b7/61cec4f8e7b1d3571e33c74e8fa496796f46a6c050156f89793a14967164/pdbeccdutils-0.5.8-py3-none-any.whl (from https://pypi.org/simple/pdbeccdutils/) (requires-python:>=3.6) 2024-05-24T09:19:22,183 Skipping link: No binaries permitted for pdbeccdutils: https://files.pythonhosted.org/packages/50/dd/a74e7dfbd69b37aab02e80fe138bfe5dec69f01d87fe97686d25f9b2e32f/pdbeccdutils-0.5.9-py3-none-any.whl (from https://pypi.org/simple/pdbeccdutils/) (requires-python:>=3.6) 2024-05-24T09:19:22,184 Found link https://files.pythonhosted.org/packages/9b/f3/1cb8eecc84e504d7a6c1353f9309fe7acbe7b04166d4f2736a4466eec4f9/pdbeccdutils-0.5.9.macosx-10.9-x86_64.tar.gz (from https://pypi.org/simple/pdbeccdutils/) (requires-python:>=3.6), version: 0.5.9.macosx-10.9-x86_64 2024-05-24T09:19:22,185 Skipping link: No binaries permitted for pdbeccdutils: https://files.pythonhosted.org/packages/b9/61/fa3c814f95f62ce4e16481addc99e130b1caf40bd284694e08991f3cbfb8/pdbeccdutils-0.5.10-py3-none-any.whl (from https://pypi.org/simple/pdbeccdutils/) (requires-python:>=3.6) 2024-05-24T09:19:22,186 Found link https://files.pythonhosted.org/packages/53/43/fefcd9bee928240865de7c999dc1774fb466a36d4e9f913549914e4bb52d/pdbeccdutils-0.5.10.tar.gz (from https://pypi.org/simple/pdbeccdutils/) (requires-python:>=3.6), version: 0.5.10 2024-05-24T09:19:22,187 Skipping link: No binaries permitted for pdbeccdutils: https://files.pythonhosted.org/packages/de/ff/db86fe950961d94a287b249c3835fdfac171b62d83d65360e77d5a3ed78a/pdbeccdutils-0.6-py3-none-any.whl (from https://pypi.org/simple/pdbeccdutils/) (requires-python:>=3.6) 2024-05-24T09:19:22,188 Found link https://files.pythonhosted.org/packages/1d/a2/3d33a24da0d50795b893737072b4eec136d8722d311151ca771279e9d8d6/pdbeccdutils-0.6.tar.gz (from https://pypi.org/simple/pdbeccdutils/) 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https://pypi.org/simple/pdbeccdutils/) (requires-python:>=3.9) 2024-05-24T09:19:22,194 Found link https://files.pythonhosted.org/packages/3a/0b/3c2f715c07c12c7de1779485ee379b905932527681f298c3c9d9dacd4109/pdbeccdutils-0.8.0.tar.gz (from https://pypi.org/simple/pdbeccdutils/) (requires-python:>=3.9), version: 0.8.0 2024-05-24T09:19:22,194 Skipping link: No binaries permitted for pdbeccdutils: https://files.pythonhosted.org/packages/4b/49/1a8b4dc6d16e26c89ea1c25a4a33db1b948dbc4f1a3dcbbdec6b4d283e5f/pdbeccdutils-0.8.1-py3-none-any.whl (from https://pypi.org/simple/pdbeccdutils/) (requires-python:>=3.9) 2024-05-24T09:19:22,195 Found link https://files.pythonhosted.org/packages/22/19/9066e642f24f6ea00e1ee877e087dc137b377fedb254742b1ad856688547/pdbeccdutils-0.8.1.tar.gz (from https://pypi.org/simple/pdbeccdutils/) (requires-python:>=3.9), version: 0.8.1 2024-05-24T09:19:22,196 Skipping link: No binaries permitted for pdbeccdutils: 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version: 0.8.3 2024-05-24T09:19:22,199 Skipping link: No binaries permitted for pdbeccdutils: https://files.pythonhosted.org/packages/6d/c5/ecce210f8aa4ba45f3e44f10a2468a4a09a61cfd0bb81130e4f8bf3b7960/pdbeccdutils-0.8.4-py3-none-any.whl (from https://pypi.org/simple/pdbeccdutils/) (requires-python:>=3.9) 2024-05-24T09:19:22,200 Found link https://files.pythonhosted.org/packages/1d/08/85d5d8d7bed19a3f89e12cc8a756f0a9f78a4c5afa36b40669e25d9db9ad/pdbeccdutils-0.8.4.tar.gz (from https://pypi.org/simple/pdbeccdutils/) (requires-python:>=3.9), version: 0.8.4 2024-05-24T09:19:22,201 Skipping link: No binaries permitted for pdbeccdutils: https://files.pythonhosted.org/packages/50/50/0f2e5da81fa27e4fafae5fb915d6c18e781ca560c6d6677e7f081bf8a6f7/pdbeccdutils-0.8.5-py3-none-any.whl (from https://pypi.org/simple/pdbeccdutils/) (requires-python:>=3.9) 2024-05-24T09:19:22,202 Found link https://files.pythonhosted.org/packages/1a/b0/632f7692b29bdfe95eac7e00ce1c62a868aeaa6e3bd576b4d05c699f6c80/pdbeccdutils-0.8.5.tar.gz (from https://pypi.org/simple/pdbeccdutils/) (requires-python:>=3.9), version: 0.8.5 2024-05-24T09:19:22,203 Fetching project page and analyzing links: https://www.piwheels.org/simple/pdbeccdutils/ 2024-05-24T09:19:22,203 Getting page https://www.piwheels.org/simple/pdbeccdutils/ 2024-05-24T09:19:22,205 Found index url https://www.piwheels.org/simple/ 2024-05-24T09:19:23,731 Fetched page https://www.piwheels.org/simple/pdbeccdutils/ as text/html 2024-05-24T09:19:23,740 Skipping link: No binaries permitted for pdbeccdutils: https://www.piwheels.org/simple/pdbeccdutils/pdbeccdutils-0.8.4-py3-none-any.whl#sha256=30e91267729289721f1d2bcbe3873bc62ada4f68a471ea9ca10a012a59905251 (from https://www.piwheels.org/simple/pdbeccdutils/) (requires-python:>=3.9) 2024-05-24T09:19:23,741 Skipping link: No binaries permitted for pdbeccdutils: 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https://www.piwheels.org/simple/pdbeccdutils/pdbeccdutils-0.7.0-py3-none-any.whl#sha256=23019671e99e1eff739f76e1c461c42851855d415e3cf8e72c511cf08aac0b91 (from https://www.piwheels.org/simple/pdbeccdutils/) (requires-python:>=3.6) 2024-05-24T09:19:23,748 Skipping link: No binaries permitted for pdbeccdutils: https://www.piwheels.org/simple/pdbeccdutils/pdbeccdutils-0.6-py3-none-any.whl#sha256=9794eaa2ae664987b4c775e3a10992bcf07f170e2b9281d01414e77a90fc4dc8 (from https://www.piwheels.org/simple/pdbeccdutils/) (requires-python:>=3.6) 2024-05-24T09:19:23,748 Skipping link: No binaries permitted for pdbeccdutils: https://www.piwheels.org/simple/pdbeccdutils/pdbeccdutils-0.5.10-py3-none-any.whl#sha256=6167688099c1971017ef069b3522ab646207bf1ae4f1f69ead9825db98c0b5d2 (from https://www.piwheels.org/simple/pdbeccdutils/) (requires-python:>=3.6) 2024-05-24T09:19:23,749 Skipping link: No binaries permitted for pdbeccdutils: https://www.piwheels.org/simple/pdbeccdutils/pdbeccdutils-0.5.9-py3-none-any.whl#sha256=4371f5464ab054be5c99fdf769d2cfe4de21da32930f157566a553f1020ac74a (from https://www.piwheels.org/simple/pdbeccdutils/) (requires-python:>=3.6) 2024-05-24T09:19:23,751 Skipping link: not a file: https://www.piwheels.org/simple/pdbeccdutils/ 2024-05-24T09:19:23,752 Skipping link: not a file: https://pypi.org/simple/pdbeccdutils/ 2024-05-24T09:19:23,791 Given no hashes to check 1 links for project 'pdbeccdutils': discarding no candidates 2024-05-24T09:19:23,823 Collecting pdbeccdutils==0.8.5 2024-05-24T09:19:23,826 Created temporary directory: /tmp/pip-unpack-z0i6fuec 2024-05-24T09:19:24,144 Downloading pdbeccdutils-0.8.5.tar.gz (121 kB) 2024-05-24T09:19:24,374 Added pdbeccdutils==0.8.5 from https://files.pythonhosted.org/packages/1a/b0/632f7692b29bdfe95eac7e00ce1c62a868aeaa6e3bd576b4d05c699f6c80/pdbeccdutils-0.8.5.tar.gz to build tracker '/tmp/pip-build-tracker-9iksr92s' 2024-05-24T09:19:24,376 Running setup.py (path:/tmp/pip-wheel-ktycbhol/pdbeccdutils_f9827abdb42945d29af8ae4d826897b9/setup.py) egg_info for package pdbeccdutils 2024-05-24T09:19:24,377 Created temporary directory: /tmp/pip-pip-egg-info-jtkrcmci 2024-05-24T09:19:24,377 Preparing metadata (setup.py): started 2024-05-24T09:19:24,379 Running command python setup.py egg_info 2024-05-24T09:19:25,543 running egg_info 2024-05-24T09:19:25,545 creating /tmp/pip-pip-egg-info-jtkrcmci/pdbeccdutils.egg-info 2024-05-24T09:19:25,572 writing /tmp/pip-pip-egg-info-jtkrcmci/pdbeccdutils.egg-info/PKG-INFO 2024-05-24T09:19:25,579 writing dependency_links to /tmp/pip-pip-egg-info-jtkrcmci/pdbeccdutils.egg-info/dependency_links.txt 2024-05-24T09:19:25,581 writing entry points to /tmp/pip-pip-egg-info-jtkrcmci/pdbeccdutils.egg-info/entry_points.txt 2024-05-24T09:19:25,585 writing requirements to /tmp/pip-pip-egg-info-jtkrcmci/pdbeccdutils.egg-info/requires.txt 2024-05-24T09:19:25,586 writing top-level names to /tmp/pip-pip-egg-info-jtkrcmci/pdbeccdutils.egg-info/top_level.txt 2024-05-24T09:19:25,588 writing manifest file '/tmp/pip-pip-egg-info-jtkrcmci/pdbeccdutils.egg-info/SOURCES.txt' 2024-05-24T09:19:25,905 reading manifest file '/tmp/pip-pip-egg-info-jtkrcmci/pdbeccdutils.egg-info/SOURCES.txt' 2024-05-24T09:19:25,907 reading manifest template 'MANIFEST.in' 2024-05-24T09:19:25,909 adding license file 'LICENSE' 2024-05-24T09:19:25,913 writing manifest file '/tmp/pip-pip-egg-info-jtkrcmci/pdbeccdutils.egg-info/SOURCES.txt' 2024-05-24T09:19:26,032 Preparing metadata (setup.py): finished with status 'done' 2024-05-24T09:19:26,035 Source in /tmp/pip-wheel-ktycbhol/pdbeccdutils_f9827abdb42945d29af8ae4d826897b9 has version 0.8.5, which satisfies requirement pdbeccdutils==0.8.5 from https://files.pythonhosted.org/packages/1a/b0/632f7692b29bdfe95eac7e00ce1c62a868aeaa6e3bd576b4d05c699f6c80/pdbeccdutils-0.8.5.tar.gz 2024-05-24T09:19:26,036 Removed pdbeccdutils==0.8.5 from https://files.pythonhosted.org/packages/1a/b0/632f7692b29bdfe95eac7e00ce1c62a868aeaa6e3bd576b4d05c699f6c80/pdbeccdutils-0.8.5.tar.gz from build tracker '/tmp/pip-build-tracker-9iksr92s' 2024-05-24T09:19:26,042 Created temporary directory: /tmp/pip-unpack-v78dv77s 2024-05-24T09:19:26,044 Created temporary directory: /tmp/pip-unpack-9gqo79_6 2024-05-24T09:19:26,076 Building wheels for collected packages: pdbeccdutils 2024-05-24T09:19:26,081 Created temporary directory: /tmp/pip-wheel-_5bihsm9 2024-05-24T09:19:26,082 Building wheel for pdbeccdutils (setup.py): started 2024-05-24T09:19:26,084 Destination directory: /tmp/pip-wheel-_5bihsm9 2024-05-24T09:19:26,084 Running command python setup.py bdist_wheel 2024-05-24T09:19:27,169 running bdist_wheel 2024-05-24T09:19:27,266 running build 2024-05-24T09:19:27,266 running build_py 2024-05-24T09:19:27,293 creating build 2024-05-24T09:19:27,294 creating build/lib 2024-05-24T09:19:27,295 creating build/lib/doc 2024-05-24T09:19:27,296 copying doc/conf.py -> build/lib/doc 2024-05-24T09:19:27,299 creating build/lib/pdbeccdutils 2024-05-24T09:19:27,300 copying pdbeccdutils/__init__.py -> build/lib/pdbeccdutils 2024-05-24T09:19:27,303 creating build/lib/pdbeccdutils/helpers 2024-05-24T09:19:27,303 copying pdbeccdutils/helpers/__init__.py -> build/lib/pdbeccdutils/helpers 2024-05-24T09:19:27,305 copying pdbeccdutils/helpers/cif_tools.py -> build/lib/pdbeccdutils/helpers 2024-05-24T09:19:27,307 copying pdbeccdutils/helpers/mol_tools.py -> build/lib/pdbeccdutils/helpers 2024-05-24T09:19:27,309 copying pdbeccdutils/helpers/helper.py -> build/lib/pdbeccdutils/helpers 2024-05-24T09:19:27,311 copying pdbeccdutils/helpers/conversions.py -> build/lib/pdbeccdutils/helpers 2024-05-24T09:19:27,313 copying pdbeccdutils/helpers/drawing.py -> build/lib/pdbeccdutils/helpers 2024-05-24T09:19:27,316 creating build/lib/pdbeccdutils/tests 2024-05-24T09:19:27,317 copying pdbeccdutils/tests/test_inchi_key_matches.py -> build/lib/pdbeccdutils/tests 2024-05-24T09:19:27,318 copying pdbeccdutils/tests/test_parity.py -> build/lib/pdbeccdutils/tests 2024-05-24T09:19:27,320 copying pdbeccdutils/tests/test_helper_methods.py -> build/lib/pdbeccdutils/tests 2024-05-24T09:19:27,322 copying pdbeccdutils/tests/test_scaffold_generation.py -> build/lib/pdbeccdutils/tests 2024-05-24T09:19:27,323 copying pdbeccdutils/tests/test_write_img.py -> build/lib/pdbeccdutils/tests 2024-05-24T09:19:27,325 copying pdbeccdutils/tests/tst_utilities.py -> build/lib/pdbeccdutils/tests 2024-05-24T09:19:27,327 copying pdbeccdutils/tests/test_rdkit_fixtures.py -> build/lib/pdbeccdutils/tests 2024-05-24T09:19:27,329 copying pdbeccdutils/tests/test_fragment_library.py -> build/lib/pdbeccdutils/tests 2024-05-24T09:19:27,330 copying pdbeccdutils/tests/test_property_generation.py -> build/lib/pdbeccdutils/tests 2024-05-24T09:19:27,332 copying pdbeccdutils/tests/test_web_services.py -> build/lib/pdbeccdutils/tests 2024-05-24T09:19:27,334 copying pdbeccdutils/tests/test_boundmolecule_cli.py -> build/lib/pdbeccdutils/tests 2024-05-24T09:19:27,336 copying pdbeccdutils/tests/test_residue.py -> build/lib/pdbeccdutils/tests 2024-05-24T09:19:27,338 copying pdbeccdutils/tests/test_bound_molecule.py -> build/lib/pdbeccdutils/tests 2024-05-24T09:19:27,340 copying pdbeccdutils/tests/test_clc_reader.py -> build/lib/pdbeccdutils/tests 2024-05-24T09:19:27,342 copying pdbeccdutils/tests/conftest.py -> build/lib/pdbeccdutils/tests 2024-05-24T09:19:27,344 copying pdbeccdutils/tests/test_clc_writer.py -> build/lib/pdbeccdutils/tests 2024-05-24T09:19:27,346 copying pdbeccdutils/tests/test_process_components_cif_cli.py -> build/lib/pdbeccdutils/tests 2024-05-24T09:19:27,348 copying pdbeccdutils/tests/test_load_eoh_cif.py -> build/lib/pdbeccdutils/tests 2024-05-24T09:19:27,350 copying pdbeccdutils/tests/test_file_writing.py -> build/lib/pdbeccdutils/tests 2024-05-24T09:19:27,353 creating build/lib/pdbeccdutils/computations 2024-05-24T09:19:27,354 copying pdbeccdutils/computations/__init__.py -> build/lib/pdbeccdutils/computations 2024-05-24T09:19:27,356 copying pdbeccdutils/computations/parity_method.py -> build/lib/pdbeccdutils/computations 2024-05-24T09:19:27,358 creating build/lib/pdbeccdutils/utils 2024-05-24T09:19:27,359 copying pdbeccdutils/utils/__init__.py -> build/lib/pdbeccdutils/utils 2024-05-24T09:19:27,361 copying pdbeccdutils/utils/config.py -> build/lib/pdbeccdutils/utils 2024-05-24T09:19:27,363 copying pdbeccdutils/utils/web_services.py -> build/lib/pdbeccdutils/utils 2024-05-24T09:19:27,365 copying pdbeccdutils/utils/pubchem_downloader.py -> build/lib/pdbeccdutils/utils 2024-05-24T09:19:27,368 creating build/lib/pdbeccdutils/core 2024-05-24T09:19:27,370 copying pdbeccdutils/core/__init__.py -> build/lib/pdbeccdutils/core 2024-05-24T09:19:27,371 copying pdbeccdutils/core/ccd_reader.py -> build/lib/pdbeccdutils/core 2024-05-24T09:19:27,374 copying pdbeccdutils/core/prd_writer.py -> build/lib/pdbeccdutils/core 2024-05-24T09:19:27,377 copying pdbeccdutils/core/depictions.py -> build/lib/pdbeccdutils/core 2024-05-24T09:19:27,379 copying pdbeccdutils/core/clc_writer.py -> build/lib/pdbeccdutils/core 2024-05-24T09:19:27,382 copying pdbeccdutils/core/exceptions.py -> build/lib/pdbeccdutils/core 2024-05-24T09:19:27,384 copying pdbeccdutils/core/boundmolecule.py -> build/lib/pdbeccdutils/core 2024-05-24T09:19:27,386 copying pdbeccdutils/core/ccd_writer.py -> build/lib/pdbeccdutils/core 2024-05-24T09:19:27,389 copying pdbeccdutils/core/prd_reader.py -> build/lib/pdbeccdutils/core 2024-05-24T09:19:27,391 copying pdbeccdutils/core/fragment_library.py -> build/lib/pdbeccdutils/core 2024-05-24T09:19:27,393 copying pdbeccdutils/core/component.py -> build/lib/pdbeccdutils/core 2024-05-24T09:19:27,395 copying pdbeccdutils/core/clc_reader.py -> build/lib/pdbeccdutils/core 2024-05-24T09:19:27,398 copying pdbeccdutils/core/models.py -> build/lib/pdbeccdutils/core 2024-05-24T09:19:27,401 creating build/lib/pdbeccdutils/scripts 2024-05-24T09:19:27,402 copying pdbeccdutils/scripts/__init__.py -> build/lib/pdbeccdutils/scripts 2024-05-24T09:19:27,403 copying pdbeccdutils/scripts/setup_pubchem_library_cli.py -> build/lib/pdbeccdutils/scripts 2024-05-24T09:19:27,405 copying pdbeccdutils/scripts/boundmolecule_cli.py -> build/lib/pdbeccdutils/scripts 2024-05-24T09:19:27,407 copying pdbeccdutils/scripts/process_components_cif_cli.py -> build/lib/pdbeccdutils/scripts 2024-05-24T09:19:27,410 running egg_info 2024-05-24T09:19:27,469 writing pdbeccdutils.egg-info/PKG-INFO 2024-05-24T09:19:27,476 writing dependency_links to pdbeccdutils.egg-info/dependency_links.txt 2024-05-24T09:19:27,477 writing entry points to pdbeccdutils.egg-info/entry_points.txt 2024-05-24T09:19:27,480 writing requirements to pdbeccdutils.egg-info/requires.txt 2024-05-24T09:19:27,481 writing top-level names to pdbeccdutils.egg-info/top_level.txt 2024-05-24T09:19:27,518 reading manifest file 'pdbeccdutils.egg-info/SOURCES.txt' 2024-05-24T09:19:27,522 reading manifest template 'MANIFEST.in' 2024-05-24T09:19:27,523 adding license file 'LICENSE' 2024-05-24T09:19:27,528 writing manifest file 'pdbeccdutils.egg-info/SOURCES.txt' 2024-05-24T09:19:27,535 creating build/lib/pdbeccdutils/data 2024-05-24T09:19:27,536 copying pdbeccdutils/data/fragment_library.tsv -> build/lib/pdbeccdutils/data 2024-05-24T09:19:27,541 creating build/lib/pdbeccdutils/data/coordgen_templates 2024-05-24T09:19:27,542 copying pdbeccdutils/data/coordgen_templates/templates.mae -> build/lib/pdbeccdutils/data/coordgen_templates 2024-05-24T09:19:27,545 creating build/lib/pdbeccdutils/data/general_templates 2024-05-24T09:19:27,546 copying pdbeccdutils/data/general_templates/adamantane.sdf -> build/lib/pdbeccdutils/data/general_templates 2024-05-24T09:19:27,548 copying pdbeccdutils/data/general_templates/cube.sdf -> build/lib/pdbeccdutils/data/general_templates 2024-05-24T09:19:27,550 copying pdbeccdutils/data/general_templates/decahydrocorrin.sdf -> build/lib/pdbeccdutils/data/general_templates 2024-05-24T09:19:27,552 copying pdbeccdutils/data/general_templates/hem.sdf -> build/lib/pdbeccdutils/data/general_templates 2024-05-24T09:19:27,555 copying pdbeccdutils/data/general_templates/nonbornane.sdf -> build/lib/pdbeccdutils/data/general_templates 2024-05-24T09:19:27,557 copying pdbeccdutils/data/general_templates/phorbine.sdf -> build/lib/pdbeccdutils/data/general_templates 2024-05-24T09:19:27,559 copying pdbeccdutils/data/general_templates/porphin.sdf -> build/lib/pdbeccdutils/data/general_templates 2024-05-24T09:19:27,561 copying pdbeccdutils/data/general_templates/porphycene.sdf -> build/lib/pdbeccdutils/data/general_templates 2024-05-24T09:19:27,563 copying pdbeccdutils/data/general_templates/ru_complex.sdf -> build/lib/pdbeccdutils/data/general_templates 2024-05-24T09:19:27,566 copying pdbeccdutils/data/general_templates/ru_complex2.sdf -> build/lib/pdbeccdutils/data/general_templates 2024-05-24T09:19:27,598 /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. 2024-05-24T09:19:27,598 !! 2024-05-24T09:19:27,599 ******************************************************************************** 2024-05-24T09:19:27,600 Please avoid running ``setup.py`` directly. 2024-05-24T09:19:27,600 Instead, use pypa/build, pypa/installer or other 2024-05-24T09:19:27,601 standards-based tools. 2024-05-24T09:19:27,602 See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. 2024-05-24T09:19:27,602 ******************************************************************************** 2024-05-24T09:19:27,604 !! 2024-05-24T09:19:27,604 self.initialize_options() 2024-05-24T09:19:27,624 installing to build/bdist.linux-armv7l/wheel 2024-05-24T09:19:27,625 running install 2024-05-24T09:19:27,650 running install_lib 2024-05-24T09:19:27,675 creating build/bdist.linux-armv7l 2024-05-24T09:19:27,675 creating build/bdist.linux-armv7l/wheel 2024-05-24T09:19:27,677 creating build/bdist.linux-armv7l/wheel/doc 2024-05-24T09:19:27,678 copying build/lib/doc/conf.py -> build/bdist.linux-armv7l/wheel/doc 2024-05-24T09:19:27,681 creating build/bdist.linux-armv7l/wheel/pdbeccdutils 2024-05-24T09:19:27,682 creating build/bdist.linux-armv7l/wheel/pdbeccdutils/helpers 2024-05-24T09:19:27,683 copying build/lib/pdbeccdutils/helpers/__init__.py -> build/bdist.linux-armv7l/wheel/pdbeccdutils/helpers 2024-05-24T09:19:27,685 copying build/lib/pdbeccdutils/helpers/cif_tools.py -> build/bdist.linux-armv7l/wheel/pdbeccdutils/helpers 2024-05-24T09:19:27,687 copying build/lib/pdbeccdutils/helpers/mol_tools.py -> build/bdist.linux-armv7l/wheel/pdbeccdutils/helpers 2024-05-24T09:19:27,689 copying build/lib/pdbeccdutils/helpers/helper.py -> build/bdist.linux-armv7l/wheel/pdbeccdutils/helpers 2024-05-24T09:19:27,691 copying build/lib/pdbeccdutils/helpers/conversions.py -> build/bdist.linux-armv7l/wheel/pdbeccdutils/helpers 2024-05-24T09:19:27,693 copying build/lib/pdbeccdutils/helpers/drawing.py -> build/bdist.linux-armv7l/wheel/pdbeccdutils/helpers 2024-05-24T09:19:27,696 creating build/bdist.linux-armv7l/wheel/pdbeccdutils/tests 2024-05-24T09:19:27,697 copying build/lib/pdbeccdutils/tests/test_inchi_key_matches.py -> build/bdist.linux-armv7l/wheel/pdbeccdutils/tests 2024-05-24T09:19:27,699 copying build/lib/pdbeccdutils/tests/test_parity.py -> build/bdist.linux-armv7l/wheel/pdbeccdutils/tests 2024-05-24T09:19:27,701 copying build/lib/pdbeccdutils/tests/test_helper_methods.py -> build/bdist.linux-armv7l/wheel/pdbeccdutils/tests 2024-05-24T09:19:27,703 copying build/lib/pdbeccdutils/tests/test_scaffold_generation.py -> build/bdist.linux-armv7l/wheel/pdbeccdutils/tests 2024-05-24T09:19:27,705 copying build/lib/pdbeccdutils/tests/test_write_img.py -> build/bdist.linux-armv7l/wheel/pdbeccdutils/tests 2024-05-24T09:19:27,707 copying build/lib/pdbeccdutils/tests/tst_utilities.py -> build/bdist.linux-armv7l/wheel/pdbeccdutils/tests 2024-05-24T09:19:27,709 copying build/lib/pdbeccdutils/tests/test_rdkit_fixtures.py -> build/bdist.linux-armv7l/wheel/pdbeccdutils/tests 2024-05-24T09:19:27,711 copying build/lib/pdbeccdutils/tests/test_fragment_library.py -> build/bdist.linux-armv7l/wheel/pdbeccdutils/tests 2024-05-24T09:19:27,713 copying build/lib/pdbeccdutils/tests/test_property_generation.py -> build/bdist.linux-armv7l/wheel/pdbeccdutils/tests 2024-05-24T09:19:27,716 copying build/lib/pdbeccdutils/tests/test_web_services.py -> build/bdist.linux-armv7l/wheel/pdbeccdutils/tests 2024-05-24T09:19:27,718 copying build/lib/pdbeccdutils/tests/test_boundmolecule_cli.py -> build/bdist.linux-armv7l/wheel/pdbeccdutils/tests 2024-05-24T09:19:27,720 copying build/lib/pdbeccdutils/tests/test_residue.py -> build/bdist.linux-armv7l/wheel/pdbeccdutils/tests 2024-05-24T09:19:27,722 copying build/lib/pdbeccdutils/tests/test_bound_molecule.py -> build/bdist.linux-armv7l/wheel/pdbeccdutils/tests 2024-05-24T09:19:27,724 copying build/lib/pdbeccdutils/tests/test_clc_reader.py -> build/bdist.linux-armv7l/wheel/pdbeccdutils/tests 2024-05-24T09:19:27,726 copying build/lib/pdbeccdutils/tests/conftest.py -> build/bdist.linux-armv7l/wheel/pdbeccdutils/tests 2024-05-24T09:19:27,728 copying build/lib/pdbeccdutils/tests/test_clc_writer.py -> build/bdist.linux-armv7l/wheel/pdbeccdutils/tests 2024-05-24T09:19:27,730 copying build/lib/pdbeccdutils/tests/test_process_components_cif_cli.py -> build/bdist.linux-armv7l/wheel/pdbeccdutils/tests 2024-05-24T09:19:27,732 copying build/lib/pdbeccdutils/tests/test_load_eoh_cif.py -> build/bdist.linux-armv7l/wheel/pdbeccdutils/tests 2024-05-24T09:19:27,734 copying build/lib/pdbeccdutils/tests/test_file_writing.py -> build/bdist.linux-armv7l/wheel/pdbeccdutils/tests 2024-05-24T09:19:27,737 copying build/lib/pdbeccdutils/__init__.py -> build/bdist.linux-armv7l/wheel/pdbeccdutils 2024-05-24T09:19:27,739 creating build/bdist.linux-armv7l/wheel/pdbeccdutils/data 2024-05-24T09:19:27,740 copying build/lib/pdbeccdutils/data/fragment_library.tsv -> build/bdist.linux-armv7l/wheel/pdbeccdutils/data 2024-05-24T09:19:27,746 creating build/bdist.linux-armv7l/wheel/pdbeccdutils/data/coordgen_templates 2024-05-24T09:19:27,747 copying build/lib/pdbeccdutils/data/coordgen_templates/templates.mae -> build/bdist.linux-armv7l/wheel/pdbeccdutils/data/coordgen_templates 2024-05-24T09:19:27,750 creating build/bdist.linux-armv7l/wheel/pdbeccdutils/data/general_templates 2024-05-24T09:19:27,751 copying build/lib/pdbeccdutils/data/general_templates/porphycene.sdf -> build/bdist.linux-armv7l/wheel/pdbeccdutils/data/general_templates 2024-05-24T09:19:27,753 copying build/lib/pdbeccdutils/data/general_templates/adamantane.sdf -> build/bdist.linux-armv7l/wheel/pdbeccdutils/data/general_templates 2024-05-24T09:19:27,755 copying build/lib/pdbeccdutils/data/general_templates/cube.sdf -> build/bdist.linux-armv7l/wheel/pdbeccdutils/data/general_templates 2024-05-24T09:19:27,757 copying build/lib/pdbeccdutils/data/general_templates/decahydrocorrin.sdf -> build/bdist.linux-armv7l/wheel/pdbeccdutils/data/general_templates 2024-05-24T09:19:27,759 copying build/lib/pdbeccdutils/data/general_templates/ru_complex2.sdf -> build/bdist.linux-armv7l/wheel/pdbeccdutils/data/general_templates 2024-05-24T09:19:27,761 copying build/lib/pdbeccdutils/data/general_templates/nonbornane.sdf -> build/bdist.linux-armv7l/wheel/pdbeccdutils/data/general_templates 2024-05-24T09:19:27,762 copying build/lib/pdbeccdutils/data/general_templates/hem.sdf -> build/bdist.linux-armv7l/wheel/pdbeccdutils/data/general_templates 2024-05-24T09:19:27,764 copying build/lib/pdbeccdutils/data/general_templates/ru_complex.sdf -> build/bdist.linux-armv7l/wheel/pdbeccdutils/data/general_templates 2024-05-24T09:19:27,766 copying build/lib/pdbeccdutils/data/general_templates/phorbine.sdf -> build/bdist.linux-armv7l/wheel/pdbeccdutils/data/general_templates 2024-05-24T09:19:27,768 copying build/lib/pdbeccdutils/data/general_templates/porphin.sdf -> build/bdist.linux-armv7l/wheel/pdbeccdutils/data/general_templates 2024-05-24T09:19:27,770 creating build/bdist.linux-armv7l/wheel/pdbeccdutils/computations 2024-05-24T09:19:27,772 copying build/lib/pdbeccdutils/computations/__init__.py -> build/bdist.linux-armv7l/wheel/pdbeccdutils/computations 2024-05-24T09:19:27,773 copying build/lib/pdbeccdutils/computations/parity_method.py -> build/bdist.linux-armv7l/wheel/pdbeccdutils/computations 2024-05-24T09:19:27,776 creating build/bdist.linux-armv7l/wheel/pdbeccdutils/utils 2024-05-24T09:19:27,777 copying build/lib/pdbeccdutils/utils/__init__.py -> build/bdist.linux-armv7l/wheel/pdbeccdutils/utils 2024-05-24T09:19:27,779 copying build/lib/pdbeccdutils/utils/config.py -> build/bdist.linux-armv7l/wheel/pdbeccdutils/utils 2024-05-24T09:19:27,781 copying build/lib/pdbeccdutils/utils/web_services.py -> build/bdist.linux-armv7l/wheel/pdbeccdutils/utils 2024-05-24T09:19:27,783 copying build/lib/pdbeccdutils/utils/pubchem_downloader.py -> build/bdist.linux-armv7l/wheel/pdbeccdutils/utils 2024-05-24T09:19:27,786 creating build/bdist.linux-armv7l/wheel/pdbeccdutils/core 2024-05-24T09:19:27,787 copying build/lib/pdbeccdutils/core/__init__.py -> build/bdist.linux-armv7l/wheel/pdbeccdutils/core 2024-05-24T09:19:27,789 copying build/lib/pdbeccdutils/core/ccd_reader.py -> build/bdist.linux-armv7l/wheel/pdbeccdutils/core 2024-05-24T09:19:27,791 copying build/lib/pdbeccdutils/core/prd_writer.py -> build/bdist.linux-armv7l/wheel/pdbeccdutils/core 2024-05-24T09:19:27,794 copying build/lib/pdbeccdutils/core/depictions.py -> build/bdist.linux-armv7l/wheel/pdbeccdutils/core 2024-05-24T09:19:27,796 copying build/lib/pdbeccdutils/core/clc_writer.py -> build/bdist.linux-armv7l/wheel/pdbeccdutils/core 2024-05-24T09:19:27,798 copying build/lib/pdbeccdutils/core/exceptions.py -> build/bdist.linux-armv7l/wheel/pdbeccdutils/core 2024-05-24T09:19:27,800 copying build/lib/pdbeccdutils/core/boundmolecule.py -> build/bdist.linux-armv7l/wheel/pdbeccdutils/core 2024-05-24T09:19:27,802 copying build/lib/pdbeccdutils/core/ccd_writer.py -> build/bdist.linux-armv7l/wheel/pdbeccdutils/core 2024-05-24T09:19:27,805 copying build/lib/pdbeccdutils/core/prd_reader.py -> build/bdist.linux-armv7l/wheel/pdbeccdutils/core 2024-05-24T09:19:27,812 copying build/lib/pdbeccdutils/core/fragment_library.py -> build/bdist.linux-armv7l/wheel/pdbeccdutils/core 2024-05-24T09:19:27,814 copying build/lib/pdbeccdutils/core/component.py -> build/bdist.linux-armv7l/wheel/pdbeccdutils/core 2024-05-24T09:19:27,817 copying build/lib/pdbeccdutils/core/clc_reader.py -> build/bdist.linux-armv7l/wheel/pdbeccdutils/core 2024-05-24T09:19:27,819 copying build/lib/pdbeccdutils/core/models.py -> build/bdist.linux-armv7l/wheel/pdbeccdutils/core 2024-05-24T09:19:27,823 creating build/bdist.linux-armv7l/wheel/pdbeccdutils/scripts 2024-05-24T09:19:27,824 copying build/lib/pdbeccdutils/scripts/__init__.py -> build/bdist.linux-armv7l/wheel/pdbeccdutils/scripts 2024-05-24T09:19:27,825 copying build/lib/pdbeccdutils/scripts/setup_pubchem_library_cli.py -> build/bdist.linux-armv7l/wheel/pdbeccdutils/scripts 2024-05-24T09:19:27,827 copying build/lib/pdbeccdutils/scripts/boundmolecule_cli.py -> build/bdist.linux-armv7l/wheel/pdbeccdutils/scripts 2024-05-24T09:19:27,829 copying build/lib/pdbeccdutils/scripts/process_components_cif_cli.py -> build/bdist.linux-armv7l/wheel/pdbeccdutils/scripts 2024-05-24T09:19:27,832 running install_egg_info 2024-05-24T09:19:27,864 Copying pdbeccdutils.egg-info to build/bdist.linux-armv7l/wheel/pdbeccdutils-0.8.5-py3.11.egg-info 2024-05-24T09:19:27,879 running install_scripts 2024-05-24T09:19:27,899 creating build/bdist.linux-armv7l/wheel/pdbeccdutils-0.8.5.dist-info/WHEEL 2024-05-24T09:19:27,902 creating '/tmp/pip-wheel-_5bihsm9/pdbeccdutils-0.8.5-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2024-05-24T09:19:27,904 adding 'doc/conf.py' 2024-05-24T09:19:27,906 adding 'pdbeccdutils/__init__.py' 2024-05-24T09:19:27,908 adding 'pdbeccdutils/computations/__init__.py' 2024-05-24T09:19:27,909 adding 'pdbeccdutils/computations/parity_method.py' 2024-05-24T09:19:27,911 adding 'pdbeccdutils/core/__init__.py' 2024-05-24T09:19:27,913 adding 'pdbeccdutils/core/boundmolecule.py' 2024-05-24T09:19:27,915 adding 'pdbeccdutils/core/ccd_reader.py' 2024-05-24T09:19:27,920 adding 'pdbeccdutils/core/ccd_writer.py' 2024-05-24T09:19:27,923 adding 'pdbeccdutils/core/clc_reader.py' 2024-05-24T09:19:27,926 adding 'pdbeccdutils/core/clc_writer.py' 2024-05-24T09:19:27,929 adding 'pdbeccdutils/core/component.py' 2024-05-24T09:19:27,932 adding 'pdbeccdutils/core/depictions.py' 2024-05-24T09:19:27,933 adding 'pdbeccdutils/core/exceptions.py' 2024-05-24T09:19:27,935 adding 'pdbeccdutils/core/fragment_library.py' 2024-05-24T09:19:27,937 adding 'pdbeccdutils/core/models.py' 2024-05-24T09:19:27,939 adding 'pdbeccdutils/core/prd_reader.py' 2024-05-24T09:19:27,941 adding 'pdbeccdutils/core/prd_writer.py' 2024-05-24T09:19:27,962 adding 'pdbeccdutils/data/fragment_library.tsv' 2024-05-24T09:19:27,966 adding 'pdbeccdutils/data/coordgen_templates/templates.mae' 2024-05-24T09:19:27,968 adding 'pdbeccdutils/data/general_templates/adamantane.sdf' 2024-05-24T09:19:27,969 adding 'pdbeccdutils/data/general_templates/cube.sdf' 2024-05-24T09:19:27,970 adding 'pdbeccdutils/data/general_templates/decahydrocorrin.sdf' 2024-05-24T09:19:27,971 adding 'pdbeccdutils/data/general_templates/hem.sdf' 2024-05-24T09:19:27,972 adding 'pdbeccdutils/data/general_templates/nonbornane.sdf' 2024-05-24T09:19:27,974 adding 'pdbeccdutils/data/general_templates/phorbine.sdf' 2024-05-24T09:19:27,975 adding 'pdbeccdutils/data/general_templates/porphin.sdf' 2024-05-24T09:19:27,976 adding 'pdbeccdutils/data/general_templates/porphycene.sdf' 2024-05-24T09:19:27,978 adding 'pdbeccdutils/data/general_templates/ru_complex.sdf' 2024-05-24T09:19:27,979 adding 'pdbeccdutils/data/general_templates/ru_complex2.sdf' 2024-05-24T09:19:27,981 adding 'pdbeccdutils/helpers/__init__.py' 2024-05-24T09:19:27,982 adding 'pdbeccdutils/helpers/cif_tools.py' 2024-05-24T09:19:27,984 adding 'pdbeccdutils/helpers/conversions.py' 2024-05-24T09:19:27,986 adding 'pdbeccdutils/helpers/drawing.py' 2024-05-24T09:19:27,987 adding 'pdbeccdutils/helpers/helper.py' 2024-05-24T09:19:27,989 adding 'pdbeccdutils/helpers/mol_tools.py' 2024-05-24T09:19:27,991 adding 'pdbeccdutils/scripts/__init__.py' 2024-05-24T09:19:27,993 adding 'pdbeccdutils/scripts/boundmolecule_cli.py' 2024-05-24T09:19:27,995 adding 'pdbeccdutils/scripts/process_components_cif_cli.py' 2024-05-24T09:19:27,996 adding 'pdbeccdutils/scripts/setup_pubchem_library_cli.py' 2024-05-24T09:19:27,998 adding 'pdbeccdutils/tests/conftest.py' 2024-05-24T09:19:28,000 adding 'pdbeccdutils/tests/test_bound_molecule.py' 2024-05-24T09:19:28,001 adding 'pdbeccdutils/tests/test_boundmolecule_cli.py' 2024-05-24T09:19:28,002 adding 'pdbeccdutils/tests/test_clc_reader.py' 2024-05-24T09:19:28,003 adding 'pdbeccdutils/tests/test_clc_writer.py' 2024-05-24T09:19:28,005 adding 'pdbeccdutils/tests/test_file_writing.py' 2024-05-24T09:19:28,007 adding 'pdbeccdutils/tests/test_fragment_library.py' 2024-05-24T09:19:28,008 adding 'pdbeccdutils/tests/test_helper_methods.py' 2024-05-24T09:19:28,009 adding 'pdbeccdutils/tests/test_inchi_key_matches.py' 2024-05-24T09:19:28,010 adding 'pdbeccdutils/tests/test_load_eoh_cif.py' 2024-05-24T09:19:28,012 adding 'pdbeccdutils/tests/test_parity.py' 2024-05-24T09:19:28,013 adding 'pdbeccdutils/tests/test_process_components_cif_cli.py' 2024-05-24T09:19:28,015 adding 'pdbeccdutils/tests/test_property_generation.py' 2024-05-24T09:19:28,016 adding 'pdbeccdutils/tests/test_rdkit_fixtures.py' 2024-05-24T09:19:28,017 adding 'pdbeccdutils/tests/test_residue.py' 2024-05-24T09:19:28,019 adding 'pdbeccdutils/tests/test_scaffold_generation.py' 2024-05-24T09:19:28,020 adding 'pdbeccdutils/tests/test_web_services.py' 2024-05-24T09:19:28,021 adding 'pdbeccdutils/tests/test_write_img.py' 2024-05-24T09:19:28,023 adding 'pdbeccdutils/tests/tst_utilities.py' 2024-05-24T09:19:28,024 adding 'pdbeccdutils/utils/__init__.py' 2024-05-24T09:19:28,026 adding 'pdbeccdutils/utils/config.py' 2024-05-24T09:19:28,027 adding 'pdbeccdutils/utils/pubchem_downloader.py' 2024-05-24T09:19:28,029 adding 'pdbeccdutils/utils/web_services.py' 2024-05-24T09:19:28,032 adding 'pdbeccdutils-0.8.5.dist-info/LICENSE' 2024-05-24T09:19:28,033 adding 'pdbeccdutils-0.8.5.dist-info/METADATA' 2024-05-24T09:19:28,034 adding 'pdbeccdutils-0.8.5.dist-info/WHEEL' 2024-05-24T09:19:28,035 adding 'pdbeccdutils-0.8.5.dist-info/entry_points.txt' 2024-05-24T09:19:28,036 adding 'pdbeccdutils-0.8.5.dist-info/top_level.txt' 2024-05-24T09:19:28,038 adding 'pdbeccdutils-0.8.5.dist-info/RECORD' 2024-05-24T09:19:28,041 removing build/bdist.linux-armv7l/wheel 2024-05-24T09:19:28,181 Building wheel for pdbeccdutils (setup.py): finished with status 'done' 2024-05-24T09:19:28,186 Created wheel for pdbeccdutils: filename=pdbeccdutils-0.8.5-py3-none-any.whl size=149039 sha256=4713ea572dd5583fc029240c7c3b116dfaf3573949583b7ebee7e64c513a1c90 2024-05-24T09:19:28,187 Stored in directory: /tmp/pip-ephem-wheel-cache-ygo8jtit/wheels/0b/b1/a4/cad2365e0a39854ba4527dfdc01973d19ccad15a99a2a27918 2024-05-24T09:19:28,200 Successfully built pdbeccdutils 2024-05-24T09:19:28,207 Removed build tracker: '/tmp/pip-build-tracker-9iksr92s'