2024-05-26T09:48:24,606 Created temporary directory: /tmp/pip-build-tracker-n3bevfh6
2024-05-26T09:48:24,607 Initialized build tracking at /tmp/pip-build-tracker-n3bevfh6
2024-05-26T09:48:24,608 Created build tracker: /tmp/pip-build-tracker-n3bevfh6
2024-05-26T09:48:24,608 Entered build tracker: /tmp/pip-build-tracker-n3bevfh6
2024-05-26T09:48:24,609 Created temporary directory: /tmp/pip-wheel-wnlvpbh2
2024-05-26T09:48:24,613 Created temporary directory: /tmp/pip-ephem-wheel-cache-xxs7ah0e
2024-05-26T09:48:24,640 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2024-05-26T09:48:24,643 2 location(s) to search for versions of cryodrgn:
2024-05-26T09:48:24,643 * https://pypi.org/simple/cryodrgn/
2024-05-26T09:48:24,643 * https://www.piwheels.org/simple/cryodrgn/
2024-05-26T09:48:24,644 Fetching project page and analyzing links: https://pypi.org/simple/cryodrgn/
2024-05-26T09:48:24,645 Getting page https://pypi.org/simple/cryodrgn/
2024-05-26T09:48:24,646 Found index url https://pypi.org/simple/
2024-05-26T09:48:24,699 Fetched page https://pypi.org/simple/cryodrgn/ as application/vnd.pypi.simple.v1+json
2024-05-26T09:48:24,706   Skipping link: No binaries permitted for cryodrgn: https://files.pythonhosted.org/packages/8a/25/80e82244484accc834ed1099716c35b78cc322e2270f9a3558ff5898ebbb/cryodrgn-0.20.0-py3-none-any.whl (from https://pypi.org/simple/cryodrgn/) (requires-python:<3.11,>=3.9)
2024-05-26T09:48:24,707   Found link https://files.pythonhosted.org/packages/23/84/71a084cba49c7d679bd4d7d1e53a3ca89972b787b89446d726c38bcc74a0/cryodrgn-0.20.0.tar.gz (from https://pypi.org/simple/cryodrgn/) (requires-python:<3.11,>=3.9), version: 0.20.0
2024-05-26T09:48:24,707   Skipping link: No binaries permitted for cryodrgn: https://files.pythonhosted.org/packages/50/91/1306b78002812cfa9932e2691070f765b75d4385e4bbf559d211a4e71025/cryodrgn-1.1.1-py3-none-any.whl (from https://pypi.org/simple/cryodrgn/) (requires-python:>=3.7)
2024-05-26T09:48:24,708   Found link https://files.pythonhosted.org/packages/24/08/8de601e5f4fe8a5177c4191c0be1848d2952dad0ef149820aadadbee2e08/cryodrgn-1.1.1.tar.gz (from https://pypi.org/simple/cryodrgn/) (requires-python:>=3.7), version: 1.1.1
2024-05-26T09:48:24,708   Skipping link: No binaries permitted for cryodrgn: https://files.pythonhosted.org/packages/e9/78/bdf1fd8d9394a0025206a4d1478b21170d7392e35132522c5ef87855fe73/cryodrgn-2.1.0b5-py3-none-any.whl (from https://pypi.org/simple/cryodrgn/) (requires-python:>=3.7)
2024-05-26T09:48:24,708   Found link https://files.pythonhosted.org/packages/68/26/6669e39abe77e36bd49d1f21f68ed04961bdd0a76f909b497c96ce78b60b/cryodrgn-2.1.0b5.tar.gz (from https://pypi.org/simple/cryodrgn/) (requires-python:>=3.7), version: 2.1.0b5
2024-05-26T09:48:24,709   Skipping link: No binaries permitted for cryodrgn: https://files.pythonhosted.org/packages/7d/d8/dae369c30a1b908f5713f7b46f4948aed0253f9e7e124c98e6c7b15d7e57/cryodrgn-2.2.0b0-py3-none-any.whl (from https://pypi.org/simple/cryodrgn/) (requires-python:>=3.7)
2024-05-26T09:48:24,709   Found link https://files.pythonhosted.org/packages/6f/19/b950e5eb7a6d3c8d122bec56e59c447d3585a660a7605112a5346816014e/cryodrgn-2.2.0b0.tar.gz (from https://pypi.org/simple/cryodrgn/) (requires-python:>=3.7), version: 2.2.0b0
2024-05-26T09:48:24,710   Skipping link: No binaries permitted for cryodrgn: https://files.pythonhosted.org/packages/6d/79/97a3f0118ef0c156bf5eaf931f4a5855a5c5d27dedd04aaa0bcf57fe1f7c/cryodrgn-2.2.0-py3-none-any.whl (from https://pypi.org/simple/cryodrgn/) (requires-python:>=3.7)
2024-05-26T09:48:24,710   Found link https://files.pythonhosted.org/packages/03/50/3259e1a4efc92c945d1ae88fd5765a0ba4db77f0a742fc0e0a206cd781ac/cryodrgn-2.2.0.tar.gz (from https://pypi.org/simple/cryodrgn/) (requires-python:>=3.7), version: 2.2.0
2024-05-26T09:48:24,710   Skipping link: No binaries permitted for cryodrgn: https://files.pythonhosted.org/packages/03/29/f9750c89414937c8700d9d5aa167d9ed1e3157ebb6a9971effb4bcbe8bec/cryodrgn-2.3.0-py3-none-any.whl (from https://pypi.org/simple/cryodrgn/) (requires-python:>=3.7)
2024-05-26T09:48:24,711   Found link https://files.pythonhosted.org/packages/d2/69/c5d8c6da2da86575a985307f67f214a0f56a7f79d73492a5184170ea7036/cryodrgn-2.3.0.tar.gz (from https://pypi.org/simple/cryodrgn/) (requires-python:>=3.7), version: 2.3.0
2024-05-26T09:48:24,711   Skipping link: No binaries permitted for cryodrgn: https://files.pythonhosted.org/packages/08/8d/d0ff2954b5825e3b771a943b40423d57195aec5c30d4b770250ac822c7fe/cryodrgn-3.0.0b0-py3-none-any.whl (from https://pypi.org/simple/cryodrgn/) (requires-python:>=3.7)
2024-05-26T09:48:24,712   Found link https://files.pythonhosted.org/packages/74/92/6ca0ee245ed52438a0f471cfb29de766b9822010f760da08875be946e827/cryodrgn-3.0.0b0.tar.gz (from https://pypi.org/simple/cryodrgn/) (requires-python:>=3.7), version: 3.0.0b0
2024-05-26T09:48:24,712   Skipping link: No binaries permitted for cryodrgn: https://files.pythonhosted.org/packages/ec/e4/6ed8adf3e7b526a69e850b7e5d1b7f6fceede2b3683b35c81944321149a7/cryodrgn-3.0.1b0-py3-none-any.whl (from https://pypi.org/simple/cryodrgn/) (requires-python:>=3.7)
2024-05-26T09:48:24,713   Found link https://files.pythonhosted.org/packages/9d/05/4215fddb0e1cce3525690435efa36cef19ad50c1808b1d48771ea3b7ff37/cryodrgn-3.0.1b0.tar.gz (from https://pypi.org/simple/cryodrgn/) (requires-python:>=3.7), version: 3.0.1b0
2024-05-26T09:48:24,713   Skipping link: No binaries permitted for cryodrgn: https://files.pythonhosted.org/packages/f4/5b/054660b4368ce3eaf45f8301c941cf2e5ee0ba92b1f76dd1503c64d9d156/cryodrgn-3.1.0b0-py3-none-any.whl (from https://pypi.org/simple/cryodrgn/) (requires-python:>=3.7)
2024-05-26T09:48:24,713   Found link https://files.pythonhosted.org/packages/fa/81/02d79980623ec3e72fe0a381ab2953b96b71bcd81937ff54943dd2c85054/cryodrgn-3.1.0b0.tar.gz (from https://pypi.org/simple/cryodrgn/) (requires-python:>=3.7), version: 3.1.0b0
2024-05-26T09:48:24,714   Skipping link: No binaries permitted for cryodrgn: https://files.pythonhosted.org/packages/7b/90/4d4442c4ef959de675c6815995a483c1da8c840ce73da4a2208463548db7/cryodrgn-3.2.0a0-py3-none-any.whl (from https://pypi.org/simple/cryodrgn/) (requires-python:<3.11,>=3.7)
2024-05-26T09:48:24,714   Found link https://files.pythonhosted.org/packages/f2/8b/00d75ab0c8fb63f1bf59c2322d38b3e63c79882cfc9071792af0800b9c8c/cryodrgn-3.2.0a0.tar.gz (from https://pypi.org/simple/cryodrgn/) (requires-python:<3.11,>=3.7), version: 3.2.0a0
2024-05-26T09:48:24,715   Skipping link: No binaries permitted for cryodrgn: https://files.pythonhosted.org/packages/06/24/d655857f07fcb5600f36cec129e365e86492b0a97de029b99f3d83615f5d/cryodrgn-3.2.0a1-py3-none-any.whl (from https://pypi.org/simple/cryodrgn/) (requires-python:<3.11,>=3.7)
2024-05-26T09:48:24,715   Found link https://files.pythonhosted.org/packages/3d/7e/6f69becd5004ad87380939fd7438a730a9a723a76012e918731f58e8355c/cryodrgn-3.2.0a1.tar.gz (from https://pypi.org/simple/cryodrgn/) (requires-python:<3.11,>=3.7), version: 3.2.0a1
2024-05-26T09:48:24,715   Skipping link: No binaries permitted for cryodrgn: https://files.pythonhosted.org/packages/f6/33/67c3f1227b7798d9cade4a14dd8a16aaa0d537531f6e41d9d11b30c2895c/cryodrgn-3.2.0b0-py3-none-any.whl (from https://pypi.org/simple/cryodrgn/) (requires-python:<3.11,>=3.7)
2024-05-26T09:48:24,716   Found link https://files.pythonhosted.org/packages/d8/29/f6b3a3cb3463d56218319de48999e2cc281499e3afa8505f495ac1d4c201/cryodrgn-3.2.0b0.tar.gz (from https://pypi.org/simple/cryodrgn/) (requires-python:<3.11,>=3.7), version: 3.2.0b0
2024-05-26T09:48:24,716   Skipping link: No binaries permitted for cryodrgn: https://files.pythonhosted.org/packages/8c/8b/d004a4dc6b3825ee4a87d39d1045b34796bbcbbc54bbe5b482f65bac1f6c/cryodrgn-3.3.0-py3-none-any.whl (from https://pypi.org/simple/cryodrgn/) (requires-python:<3.11,>=3.9)
2024-05-26T09:48:24,717   Found link https://files.pythonhosted.org/packages/8c/10/8dd0c198e9d986f1e36223c0238383b7ca634ad291169161d9837f811507/cryodrgn-3.3.0.tar.gz (from https://pypi.org/simple/cryodrgn/) (requires-python:<3.11,>=3.9), version: 3.3.0
2024-05-26T09:48:24,717   Skipping link: No binaries permitted for cryodrgn: https://files.pythonhosted.org/packages/18/25/05730115709d6be465fbf4244c80bcaa30358b2d5ddaa5f513f12d324db0/cryodrgn-3.3.1-py3-none-any.whl (from https://pypi.org/simple/cryodrgn/) (requires-python:<3.11,>=3.9)
2024-05-26T09:48:24,718   Found link https://files.pythonhosted.org/packages/18/9a/1d5ddedf2a40765bf9050569ae86865b7567931278e33118f3780f3efaf3/cryodrgn-3.3.1.tar.gz (from https://pypi.org/simple/cryodrgn/) (requires-python:<3.11,>=3.9), version: 3.3.1
2024-05-26T09:48:24,718   Skipping link: No binaries permitted for cryodrgn: https://files.pythonhosted.org/packages/b5/2c/2ef709c868eaf191cdcfc576ed776fd6952caf17c0b7a1f4da9a6172e080/cryodrgn-3.3.2-py3-none-any.whl (from https://pypi.org/simple/cryodrgn/) (requires-python:<3.11,>=3.9)
2024-05-26T09:48:24,719   Found link https://files.pythonhosted.org/packages/9d/2e/c28a1a35d81debabe063199e4c8127cdf08123221ee850730ac630d25130/cryodrgn-3.3.2.tar.gz (from https://pypi.org/simple/cryodrgn/) (requires-python:<3.11,>=3.9), version: 3.3.2
2024-05-26T09:48:24,719 Fetching project page and analyzing links: https://www.piwheels.org/simple/cryodrgn/
2024-05-26T09:48:24,720 Getting page https://www.piwheels.org/simple/cryodrgn/
2024-05-26T09:48:24,721 Found index url https://www.piwheels.org/simple/
2024-05-26T09:48:24,827 Fetched page https://www.piwheels.org/simple/cryodrgn/ as text/html
2024-05-26T09:48:24,832   Skipping link: No binaries permitted for cryodrgn: https://www.piwheels.org/simple/cryodrgn/cryodrgn-3.3.1-py3-none-any.whl#sha256=647299cf3549465b1c2b7296e0c48b83e6208d693322dabfa10b5918d4f09358 (from https://www.piwheels.org/simple/cryodrgn/) (requires-python:<3.11,>=3.9)
2024-05-26T09:48:24,832   Skipping link: No binaries permitted for cryodrgn: https://www.piwheels.org/simple/cryodrgn/cryodrgn-3.3.0-py3-none-any.whl#sha256=8aae2a2c492aa891d21c236a7fbf48e454224d80748853e92d58f624f2bee91a (from https://www.piwheels.org/simple/cryodrgn/) (requires-python:<3.11,>=3.9)
2024-05-26T09:48:24,833   Skipping link: No binaries permitted for cryodrgn: https://www.piwheels.org/simple/cryodrgn/cryodrgn-3.2.0b0-py3-none-any.whl#sha256=9be035b539a141bdf9a3a5e223ab2d5eac88e2e8342e4fbdf2aa106b91dd220b (from https://www.piwheels.org/simple/cryodrgn/) (requires-python:<3.11,>=3.7)
2024-05-26T09:48:24,833   Skipping link: No binaries permitted for cryodrgn: https://www.piwheels.org/simple/cryodrgn/cryodrgn-3.2.0a1-py3-none-any.whl#sha256=a23e8245ce860c4122cef6f81db6fe3918ab253dab52b10afd0e4f65d9428b3e (from https://www.piwheels.org/simple/cryodrgn/) (requires-python:<3.11,>=3.7)
2024-05-26T09:48:24,833   Skipping link: No binaries permitted for cryodrgn: https://www.piwheels.org/simple/cryodrgn/cryodrgn-3.2.0a0-py3-none-any.whl#sha256=ea2d2f810968f04912365abdce1cf74f011e1b5be2b671a741a705ef827f2d4a (from https://www.piwheels.org/simple/cryodrgn/) (requires-python:<3.11,>=3.7)
2024-05-26T09:48:24,833   Skipping link: No binaries permitted for cryodrgn: https://www.piwheels.org/simple/cryodrgn/cryodrgn-3.1.0b0-py3-none-any.whl#sha256=929d0ff6af693745b3d438a6e7462cc2845e60d49457cd383b6b17b01778017c (from https://www.piwheels.org/simple/cryodrgn/) (requires-python:>=3.7)
2024-05-26T09:48:24,833   Skipping link: No binaries permitted for cryodrgn: https://www.piwheels.org/simple/cryodrgn/cryodrgn-3.0.1b0-py3-none-any.whl#sha256=c5aa67408ca576f776a9b8a331b966eb87343cb2d3713e29768705555e85f930 (from https://www.piwheels.org/simple/cryodrgn/) (requires-python:>=3.7)
2024-05-26T09:48:24,834   Skipping link: No binaries permitted for cryodrgn: https://www.piwheels.org/simple/cryodrgn/cryodrgn-3.0.0b0-py3-none-any.whl#sha256=498fba8644092d42d124e88b81d7209e358d25ea05720b664bd44c454eb221a2 (from https://www.piwheels.org/simple/cryodrgn/) (requires-python:>=3.7)
2024-05-26T09:48:24,834   Skipping link: No binaries permitted for cryodrgn: https://www.piwheels.org/simple/cryodrgn/cryodrgn-2.3.0-py3-none-any.whl#sha256=d3f519ed4819eac7456ccee2c974e41070b80d0e895797cf940ea8b8ca729631 (from https://www.piwheels.org/simple/cryodrgn/) (requires-python:>=3.7)
2024-05-26T09:48:24,834   Skipping link: No binaries permitted for cryodrgn: https://www.piwheels.org/simple/cryodrgn/cryodrgn-2.2.0-py3-none-any.whl#sha256=6d705695a229d236db29c0b847f18e336bc53358ef3bc125cb158bd743f53bc9 (from https://www.piwheels.org/simple/cryodrgn/) (requires-python:>=3.7)
2024-05-26T09:48:24,834   Skipping link: No binaries permitted for cryodrgn: https://www.piwheels.org/simple/cryodrgn/cryodrgn-2.2.0b0-py3-none-any.whl#sha256=ded8ccf2e343961488fc50ee73479e8c5a9bc61dd79a83f509f96e86c01e9306 (from https://www.piwheels.org/simple/cryodrgn/) (requires-python:>=3.7)
2024-05-26T09:48:24,834   Skipping link: No binaries permitted for cryodrgn: https://www.piwheels.org/simple/cryodrgn/cryodrgn-2.1.0b5-py3-none-any.whl#sha256=f43221397e48ac64c02c3009e927ea1212a8ad59ed1e20421a65287c9e853652 (from https://www.piwheels.org/simple/cryodrgn/) (requires-python:>=3.7)
2024-05-26T09:48:24,835   Skipping link: No binaries permitted for cryodrgn: https://www.piwheels.org/simple/cryodrgn/cryodrgn-1.1.1-py3-none-any.whl#sha256=b3cc3928fe1cc0f347265449cd329a61f3b7eadb9f833c26748b681c220cb4ad (from https://www.piwheels.org/simple/cryodrgn/) (requires-python:>=3.7)
2024-05-26T09:48:24,835   Skipping link: No binaries permitted for cryodrgn: https://www.piwheels.org/simple/cryodrgn/cryodrgn-0.20.0-py3-none-any.whl#sha256=717a2f51d76e34a261789323999467e1716afd1588ee2b5ab9784100649a0453 (from https://www.piwheels.org/simple/cryodrgn/) (requires-python:<3.11,>=3.9)
2024-05-26T09:48:24,835 Skipping link: not a file: https://www.piwheels.org/simple/cryodrgn/
2024-05-26T09:48:24,835 Skipping link: not a file: https://pypi.org/simple/cryodrgn/
2024-05-26T09:48:24,854 Given no hashes to check 1 links for project 'cryodrgn': discarding no candidates
2024-05-26T09:48:24,871 Collecting cryodrgn==3.3.2
2024-05-26T09:48:24,873   Created temporary directory: /tmp/pip-unpack-ztzxij71
2024-05-26T09:48:25,012   Downloading cryodrgn-3.3.2.tar.gz (37.5 MB)
2024-05-26T09:48:33,066   Added cryodrgn==3.3.2 from https://files.pythonhosted.org/packages/9d/2e/c28a1a35d81debabe063199e4c8127cdf08123221ee850730ac630d25130/cryodrgn-3.3.2.tar.gz to build tracker '/tmp/pip-build-tracker-n3bevfh6'
2024-05-26T09:48:33,073   Created temporary directory: /tmp/pip-build-env-26nnffd9
2024-05-26T09:48:33,082   Installing build dependencies: started
2024-05-26T09:48:33,083   Running command pip subprocess to install build dependencies
2024-05-26T09:48:34,239   Using pip 24.0 from /usr/local/lib/python3.9/dist-packages/pip (python 3.9)
2024-05-26T09:48:34,751   Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2024-05-26T09:48:36,545   Collecting setuptools>=61.0
2024-05-26T09:48:36,570     Using cached https://www.piwheels.org/simple/setuptools/setuptools-70.0.0-py3-none-any.whl (863 kB)
2024-05-26T09:48:37,000   Collecting setuptools_scm>=6.2
2024-05-26T09:48:37,020     Using cached https://www.piwheels.org/simple/setuptools-scm/setuptools_scm-8.1.0-py3-none-any.whl (43 kB)
2024-05-26T09:48:37,390   Collecting packaging>=20 (from setuptools_scm>=6.2)
2024-05-26T09:48:37,413     Using cached https://www.piwheels.org/simple/packaging/packaging-24.0-py3-none-any.whl (53 kB)
2024-05-26T09:48:37,553   Collecting typing-extensions (from setuptools_scm>=6.2)
2024-05-26T09:48:37,786     Using cached https://www.piwheels.org/simple/typing-extensions/typing_extensions-4.12.0-py3-none-any.whl (37 kB)
2024-05-26T09:48:37,914   Collecting tomli>=1 (from setuptools_scm>=6.2)
2024-05-26T09:48:37,935     Using cached https://www.piwheels.org/simple/tomli/tomli-2.0.1-py3-none-any.whl (12 kB)
2024-05-26T09:48:39,600   Installing collected packages: typing-extensions, tomli, setuptools, packaging, setuptools_scm
2024-05-26T09:48:42,305   Successfully installed packaging-24.0 setuptools-70.0.0 setuptools_scm-8.1.0 tomli-2.0.1 typing-extensions-4.12.0
2024-05-26T09:48:42,761   Installing build dependencies: finished with status 'done'
2024-05-26T09:48:42,769   Getting requirements to build wheel: started
2024-05-26T09:48:42,770   Running command Getting requirements to build wheel
2024-05-26T09:48:43,685   running egg_info
2024-05-26T09:48:43,692   writing cryodrgn.egg-info/PKG-INFO
2024-05-26T09:48:43,700   writing dependency_links to cryodrgn.egg-info/dependency_links.txt
2024-05-26T09:48:43,702   writing entry points to cryodrgn.egg-info/entry_points.txt
2024-05-26T09:48:43,706   writing requirements to cryodrgn.egg-info/requires.txt
2024-05-26T09:48:43,707   writing top-level names to cryodrgn.egg-info/top_level.txt
2024-05-26T09:48:43,758   ERROR setuptools_scm._file_finders.git listing git files failed - pretending there aren't any
2024-05-26T09:48:43,766   reading manifest file 'cryodrgn.egg-info/SOURCES.txt'
2024-05-26T09:48:43,776   reading manifest template 'MANIFEST.in'
2024-05-26T09:48:43,778   adding license file 'LICENSE.txt'
2024-05-26T09:48:43,791   writing manifest file 'cryodrgn.egg-info/SOURCES.txt'
2024-05-26T09:48:43,902   Getting requirements to build wheel: finished with status 'done'
2024-05-26T09:48:43,916   Installing backend dependencies: started
2024-05-26T09:48:43,917   Running command pip subprocess to install backend dependencies
2024-05-26T09:48:45,085   Using pip 24.0 from /usr/local/lib/python3.9/dist-packages/pip (python 3.9)
2024-05-26T09:48:45,594   Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2024-05-26T09:48:45,966   Collecting wheel
2024-05-26T09:48:45,984     Using cached https://www.piwheels.org/simple/wheel/wheel-0.43.0-py3-none-any.whl (65 kB)
2024-05-26T09:48:47,437   Installing collected packages: wheel
2024-05-26T09:48:47,657     Creating /tmp/pip-build-env-26nnffd9/normal/bin
2024-05-26T09:48:47,659     changing mode of /tmp/pip-build-env-26nnffd9/normal/bin/wheel to 755
2024-05-26T09:48:47,671   Successfully installed wheel-0.43.0
2024-05-26T09:48:48,052   Installing backend dependencies: finished with status 'done'
2024-05-26T09:48:48,054   Created temporary directory: /tmp/pip-modern-metadata-4bw_ltda
2024-05-26T09:48:48,057   Preparing metadata (pyproject.toml): started
2024-05-26T09:48:48,058   Running command Preparing metadata (pyproject.toml)
2024-05-26T09:48:48,981   running dist_info
2024-05-26T09:48:48,988   creating /tmp/pip-modern-metadata-4bw_ltda/cryodrgn.egg-info
2024-05-26T09:48:48,994   writing /tmp/pip-modern-metadata-4bw_ltda/cryodrgn.egg-info/PKG-INFO
2024-05-26T09:48:49,002   writing dependency_links to /tmp/pip-modern-metadata-4bw_ltda/cryodrgn.egg-info/dependency_links.txt
2024-05-26T09:48:49,004   writing entry points to /tmp/pip-modern-metadata-4bw_ltda/cryodrgn.egg-info/entry_points.txt
2024-05-26T09:48:49,008   writing requirements to /tmp/pip-modern-metadata-4bw_ltda/cryodrgn.egg-info/requires.txt
2024-05-26T09:48:49,009   writing top-level names to /tmp/pip-modern-metadata-4bw_ltda/cryodrgn.egg-info/top_level.txt
2024-05-26T09:48:49,010   writing manifest file '/tmp/pip-modern-metadata-4bw_ltda/cryodrgn.egg-info/SOURCES.txt'
2024-05-26T09:48:49,059   ERROR setuptools_scm._file_finders.git listing git files failed - pretending there aren't any
2024-05-26T09:48:49,068   reading manifest file '/tmp/pip-modern-metadata-4bw_ltda/cryodrgn.egg-info/SOURCES.txt'
2024-05-26T09:48:49,071   reading manifest template 'MANIFEST.in'
2024-05-26T09:48:49,073   adding license file 'LICENSE.txt'
2024-05-26T09:48:49,078   writing manifest file '/tmp/pip-modern-metadata-4bw_ltda/cryodrgn.egg-info/SOURCES.txt'
2024-05-26T09:48:49,080   creating '/tmp/pip-modern-metadata-4bw_ltda/cryodrgn-3.3.2.dist-info'
2024-05-26T09:48:49,246   Preparing metadata (pyproject.toml): finished with status 'done'
2024-05-26T09:48:49,254   Source in /tmp/pip-wheel-wnlvpbh2/cryodrgn_85bae16eab9c4ac4bcb7970fef31df7c has version 3.3.2, which satisfies requirement cryodrgn==3.3.2 from https://files.pythonhosted.org/packages/9d/2e/c28a1a35d81debabe063199e4c8127cdf08123221ee850730ac630d25130/cryodrgn-3.3.2.tar.gz
2024-05-26T09:48:49,255   Removed cryodrgn==3.3.2 from https://files.pythonhosted.org/packages/9d/2e/c28a1a35d81debabe063199e4c8127cdf08123221ee850730ac630d25130/cryodrgn-3.3.2.tar.gz from build tracker '/tmp/pip-build-tracker-n3bevfh6'
2024-05-26T09:48:49,263 Created temporary directory: /tmp/pip-unpack-x7hctlp_
2024-05-26T09:48:49,264 Created temporary directory: /tmp/pip-unpack-9ntord__
2024-05-26T09:48:49,307 Building wheels for collected packages: cryodrgn
2024-05-26T09:48:49,311   Created temporary directory: /tmp/pip-wheel-m6kewor1
2024-05-26T09:48:49,311   Destination directory: /tmp/pip-wheel-m6kewor1
2024-05-26T09:48:49,313   Building wheel for cryodrgn (pyproject.toml): started
2024-05-26T09:48:49,314   Running command Building wheel for cryodrgn (pyproject.toml)
2024-05-26T09:48:50,186   running bdist_wheel
2024-05-26T09:48:50,211   running build
2024-05-26T09:48:50,212   running build_py
2024-05-26T09:48:50,219   creating build
2024-05-26T09:48:50,220   creating build/lib
2024-05-26T09:48:50,221   creating build/lib/cryodrgn
2024-05-26T09:48:50,222   copying cryodrgn/command_line.py -> build/lib/cryodrgn
2024-05-26T09:48:50,224   copying cryodrgn/dataset.py -> build/lib/cryodrgn
2024-05-26T09:48:50,227   copying cryodrgn/lie_tools.py -> build/lib/cryodrgn
2024-05-26T09:48:50,229   copying cryodrgn/utils.py -> build/lib/cryodrgn
2024-05-26T09:48:50,231   copying cryodrgn/_version.py -> build/lib/cryodrgn
2024-05-26T09:48:50,232   copying cryodrgn/models.py -> build/lib/cryodrgn
2024-05-26T09:48:50,235   copying cryodrgn/mrc.py -> build/lib/cryodrgn
2024-05-26T09:48:50,237   copying cryodrgn/config.py -> build/lib/cryodrgn
2024-05-26T09:48:50,239   copying cryodrgn/fft.py -> build/lib/cryodrgn
2024-05-26T09:48:50,241   copying cryodrgn/make_healpy.py -> build/lib/cryodrgn
2024-05-26T09:48:50,242   copying cryodrgn/analysis.py -> build/lib/cryodrgn
2024-05-26T09:48:50,245   copying cryodrgn/losses.py -> build/lib/cryodrgn
2024-05-26T09:48:50,246   copying cryodrgn/shift_grid.py -> build/lib/cryodrgn
2024-05-26T09:48:50,248   copying cryodrgn/lattice.py -> build/lib/cryodrgn
2024-05-26T09:48:50,250   copying cryodrgn/starfile.py -> build/lib/cryodrgn
2024-05-26T09:48:50,252   copying cryodrgn/source.py -> build/lib/cryodrgn
2024-05-26T09:48:50,254   copying cryodrgn/__init__.py -> build/lib/cryodrgn
2024-05-26T09:48:50,256   copying cryodrgn/pose.py -> build/lib/cryodrgn
2024-05-26T09:48:50,258   copying cryodrgn/pose_search.py -> build/lib/cryodrgn
2024-05-26T09:48:50,261   copying cryodrgn/shift_grid3.py -> build/lib/cryodrgn
2024-05-26T09:48:50,262   copying cryodrgn/beta_schedule.py -> build/lib/cryodrgn
2024-05-26T09:48:50,264   copying cryodrgn/ctf.py -> build/lib/cryodrgn
2024-05-26T09:48:50,266   copying cryodrgn/so3_grid.py -> build/lib/cryodrgn
2024-05-26T09:48:50,270   creating build/lib/cryodrgn/commands_utils
2024-05-26T09:48:50,271   copying cryodrgn/commands_utils/plot_fsc.py -> build/lib/cryodrgn/commands_utils
2024-05-26T09:48:50,273   copying cryodrgn/commands_utils/write_star.py -> build/lib/cryodrgn/commands_utils
2024-05-26T09:48:50,275   copying cryodrgn/commands_utils/translate_mrcs.py -> build/lib/cryodrgn/commands_utils
2024-05-26T09:48:50,277   copying cryodrgn/commands_utils/write_cs.py -> build/lib/cryodrgn/commands_utils
2024-05-26T09:48:50,278   copying cryodrgn/commands_utils/view_cs_header.py -> build/lib/cryodrgn/commands_utils
2024-05-26T09:48:50,280   copying cryodrgn/commands_utils/add_psize.py -> build/lib/cryodrgn/commands_utils
2024-05-26T09:48:50,282   copying cryodrgn/commands_utils/phase_flip.py -> build/lib/cryodrgn/commands_utils
2024-05-26T09:48:50,283   copying cryodrgn/commands_utils/clean.py -> build/lib/cryodrgn/commands_utils
2024-05-26T09:48:50,286   copying cryodrgn/commands_utils/__init__.py -> build/lib/cryodrgn/commands_utils
2024-05-26T09:48:50,287   copying cryodrgn/commands_utils/filter_pkl.py -> build/lib/cryodrgn/commands_utils
2024-05-26T09:48:50,289   copying cryodrgn/commands_utils/select_clusters.py -> build/lib/cryodrgn/commands_utils
2024-05-26T09:48:50,291   copying cryodrgn/commands_utils/view_header.py -> build/lib/cryodrgn/commands_utils
2024-05-26T09:48:50,292   copying cryodrgn/commands_utils/filter_mrcs.py -> build/lib/cryodrgn/commands_utils
2024-05-26T09:48:50,294   copying cryodrgn/commands_utils/invert_contrast.py -> build/lib/cryodrgn/commands_utils
2024-05-26T09:48:50,296   copying cryodrgn/commands_utils/select_random.py -> build/lib/cryodrgn/commands_utils
2024-05-26T09:48:50,297   copying cryodrgn/commands_utils/view_mrcs.py -> build/lib/cryodrgn/commands_utils
2024-05-26T09:48:50,299   copying cryodrgn/commands_utils/filter_star.py -> build/lib/cryodrgn/commands_utils
2024-05-26T09:48:50,301   copying cryodrgn/commands_utils/concat_pkls.py -> build/lib/cryodrgn/commands_utils
2024-05-26T09:48:50,302   copying cryodrgn/commands_utils/flip_hand.py -> build/lib/cryodrgn/commands_utils
2024-05-26T09:48:50,304   copying cryodrgn/commands_utils/fsc.py -> build/lib/cryodrgn/commands_utils
2024-05-26T09:48:50,306   copying cryodrgn/commands_utils/gen_mask.py -> build/lib/cryodrgn/commands_utils
2024-05-26T09:48:50,309   creating build/lib/cryodrgn/commands
2024-05-26T09:48:50,310   copying cryodrgn/commands/filter.py -> build/lib/cryodrgn/commands
2024-05-26T09:48:50,312   copying cryodrgn/commands/graph_traversal.py -> build/lib/cryodrgn/commands
2024-05-26T09:48:50,314   copying cryodrgn/commands/backproject_voxel.py -> build/lib/cryodrgn/commands
2024-05-26T09:48:50,317   copying cryodrgn/commands/analyze.py -> build/lib/cryodrgn/commands
2024-05-26T09:48:50,319   copying cryodrgn/commands/parse_pose_csparc.py -> build/lib/cryodrgn/commands
2024-05-26T09:48:50,321   copying cryodrgn/commands/analyze_landscape.py -> build/lib/cryodrgn/commands
2024-05-26T09:48:50,323   copying cryodrgn/commands/analyze_landscape_full.py -> build/lib/cryodrgn/commands
2024-05-26T09:48:50,326   copying cryodrgn/commands/parse_ctf_csparc.py -> build/lib/cryodrgn/commands
2024-05-26T09:48:50,328   copying cryodrgn/commands/eval_vol.py -> build/lib/cryodrgn/commands
2024-05-26T09:48:50,330   copying cryodrgn/commands/parse_ctf_star.py -> build/lib/cryodrgn/commands
2024-05-26T09:48:50,332   copying cryodrgn/commands/view_config.py -> build/lib/cryodrgn/commands
2024-05-26T09:48:50,333   copying cryodrgn/commands/eval_images.py -> build/lib/cryodrgn/commands
2024-05-26T09:48:50,336   copying cryodrgn/commands/abinit_het.py -> build/lib/cryodrgn/commands
2024-05-26T09:48:50,339   copying cryodrgn/commands/preprocess.py -> build/lib/cryodrgn/commands
2024-05-26T09:48:50,341   copying cryodrgn/commands/parse_pose_star.py -> build/lib/cryodrgn/commands
2024-05-26T09:48:50,343   copying cryodrgn/commands/__init__.py -> build/lib/cryodrgn/commands
2024-05-26T09:48:50,344   copying cryodrgn/commands/train_vae.py -> build/lib/cryodrgn/commands
2024-05-26T09:48:50,347   copying cryodrgn/commands/direct_traversal.py -> build/lib/cryodrgn/commands
2024-05-26T09:48:50,349   copying cryodrgn/commands/abinit_homo.py -> build/lib/cryodrgn/commands
2024-05-26T09:48:50,351   copying cryodrgn/commands/pc_traversal.py -> build/lib/cryodrgn/commands
2024-05-26T09:48:50,353   copying cryodrgn/commands/train_nn.py -> build/lib/cryodrgn/commands
2024-05-26T09:48:50,356   copying cryodrgn/commands/downsample.py -> build/lib/cryodrgn/commands
2024-05-26T09:48:50,357   running egg_info
2024-05-26T09:48:50,363   writing cryodrgn.egg-info/PKG-INFO
2024-05-26T09:48:50,370   writing dependency_links to cryodrgn.egg-info/dependency_links.txt
2024-05-26T09:48:50,372   writing entry points to cryodrgn.egg-info/entry_points.txt
2024-05-26T09:48:50,376   writing requirements to cryodrgn.egg-info/requires.txt
2024-05-26T09:48:50,377   writing top-level names to cryodrgn.egg-info/top_level.txt
2024-05-26T09:48:50,420   ERROR setuptools_scm._file_finders.git listing git files failed - pretending there aren't any
2024-05-26T09:48:50,428   reading manifest file 'cryodrgn.egg-info/SOURCES.txt'
2024-05-26T09:48:50,457   reading manifest template 'MANIFEST.in'
2024-05-26T09:48:50,459   adding license file 'LICENSE.txt'
2024-05-26T09:48:50,472   writing manifest file 'cryodrgn.egg-info/SOURCES.txt'
2024-05-26T09:48:50,485   copying cryodrgn/healpy_grid.json -> build/lib/cryodrgn
2024-05-26T09:48:50,628   creating build/lib/cryodrgn/templates
2024-05-26T09:48:50,629   copying cryodrgn/templates/cryoDRGN_ET_viz_template.ipynb -> build/lib/cryodrgn/templates
2024-05-26T09:48:50,632   copying cryodrgn/templates/cryoDRGN_analyze_landscape_template.ipynb -> build/lib/cryodrgn/templates
2024-05-26T09:48:50,635   copying cryodrgn/templates/cryoDRGN_figures_template.ipynb -> build/lib/cryodrgn/templates
2024-05-26T09:48:50,638   copying cryodrgn/templates/cryoDRGN_filtering_template.ipynb -> build/lib/cryodrgn/templates
2024-05-26T09:48:50,641   copying cryodrgn/templates/cryoDRGN_viz_template.ipynb -> build/lib/cryodrgn/templates
2024-05-26T09:48:50,659   installing to build/bdist.linux-armv7l/wheel
2024-05-26T09:48:50,660   running install
2024-05-26T09:48:50,686   running install_lib
2024-05-26T09:48:50,692   creating build/bdist.linux-armv7l
2024-05-26T09:48:50,693   creating build/bdist.linux-armv7l/wheel
2024-05-26T09:48:50,695   creating build/bdist.linux-armv7l/wheel/cryodrgn
2024-05-26T09:48:50,697   copying build/lib/cryodrgn/command_line.py -> build/bdist.linux-armv7l/wheel/cryodrgn
2024-05-26T09:48:50,699   copying build/lib/cryodrgn/dataset.py -> build/bdist.linux-armv7l/wheel/cryodrgn
2024-05-26T09:48:50,701   copying build/lib/cryodrgn/healpy_grid.json -> build/bdist.linux-armv7l/wheel/cryodrgn
2024-05-26T09:48:50,859   copying build/lib/cryodrgn/lie_tools.py -> build/bdist.linux-armv7l/wheel/cryodrgn
2024-05-26T09:48:50,861   copying build/lib/cryodrgn/utils.py -> build/bdist.linux-armv7l/wheel/cryodrgn
2024-05-26T09:48:50,863   copying build/lib/cryodrgn/_version.py -> build/bdist.linux-armv7l/wheel/cryodrgn
2024-05-26T09:48:50,865   copying build/lib/cryodrgn/models.py -> build/bdist.linux-armv7l/wheel/cryodrgn
2024-05-26T09:48:50,868   creating build/bdist.linux-armv7l/wheel/cryodrgn/templates
2024-05-26T09:48:50,869   copying build/lib/cryodrgn/templates/cryoDRGN_filtering_template.ipynb -> build/bdist.linux-armv7l/wheel/cryodrgn/templates
2024-05-26T09:48:50,872   copying build/lib/cryodrgn/templates/cryoDRGN_ET_viz_template.ipynb -> build/bdist.linux-armv7l/wheel/cryodrgn/templates
2024-05-26T09:48:50,875   copying build/lib/cryodrgn/templates/cryoDRGN_figures_template.ipynb -> build/bdist.linux-armv7l/wheel/cryodrgn/templates
2024-05-26T09:48:50,878   copying build/lib/cryodrgn/templates/cryoDRGN_analyze_landscape_template.ipynb -> build/bdist.linux-armv7l/wheel/cryodrgn/templates
2024-05-26T09:48:50,880   copying build/lib/cryodrgn/templates/cryoDRGN_viz_template.ipynb -> build/bdist.linux-armv7l/wheel/cryodrgn/templates
2024-05-26T09:48:50,883   copying build/lib/cryodrgn/mrc.py -> build/bdist.linux-armv7l/wheel/cryodrgn
2024-05-26T09:48:50,885   copying build/lib/cryodrgn/config.py -> build/bdist.linux-armv7l/wheel/cryodrgn
2024-05-26T09:48:50,887   copying build/lib/cryodrgn/fft.py -> build/bdist.linux-armv7l/wheel/cryodrgn
2024-05-26T09:48:50,889   copying build/lib/cryodrgn/make_healpy.py -> build/bdist.linux-armv7l/wheel/cryodrgn
2024-05-26T09:48:50,892   creating build/bdist.linux-armv7l/wheel/cryodrgn/commands_utils
2024-05-26T09:48:50,893   copying build/lib/cryodrgn/commands_utils/plot_fsc.py -> build/bdist.linux-armv7l/wheel/cryodrgn/commands_utils
2024-05-26T09:48:50,895   copying build/lib/cryodrgn/commands_utils/write_star.py -> build/bdist.linux-armv7l/wheel/cryodrgn/commands_utils
2024-05-26T09:48:50,897   copying build/lib/cryodrgn/commands_utils/translate_mrcs.py -> build/bdist.linux-armv7l/wheel/cryodrgn/commands_utils
2024-05-26T09:48:50,899   copying build/lib/cryodrgn/commands_utils/write_cs.py -> build/bdist.linux-armv7l/wheel/cryodrgn/commands_utils
2024-05-26T09:48:50,900   copying build/lib/cryodrgn/commands_utils/view_cs_header.py -> build/bdist.linux-armv7l/wheel/cryodrgn/commands_utils
2024-05-26T09:48:50,902   copying build/lib/cryodrgn/commands_utils/add_psize.py -> build/bdist.linux-armv7l/wheel/cryodrgn/commands_utils
2024-05-26T09:48:50,904   copying build/lib/cryodrgn/commands_utils/phase_flip.py -> build/bdist.linux-armv7l/wheel/cryodrgn/commands_utils
2024-05-26T09:48:50,905   copying build/lib/cryodrgn/commands_utils/clean.py -> build/bdist.linux-armv7l/wheel/cryodrgn/commands_utils
2024-05-26T09:48:50,907   copying build/lib/cryodrgn/commands_utils/__init__.py -> build/bdist.linux-armv7l/wheel/cryodrgn/commands_utils
2024-05-26T09:48:50,909   copying build/lib/cryodrgn/commands_utils/filter_pkl.py -> build/bdist.linux-armv7l/wheel/cryodrgn/commands_utils
2024-05-26T09:48:50,910   copying build/lib/cryodrgn/commands_utils/select_clusters.py -> build/bdist.linux-armv7l/wheel/cryodrgn/commands_utils
2024-05-26T09:48:50,912   copying build/lib/cryodrgn/commands_utils/view_header.py -> build/bdist.linux-armv7l/wheel/cryodrgn/commands_utils
2024-05-26T09:48:50,913   copying build/lib/cryodrgn/commands_utils/filter_mrcs.py -> build/bdist.linux-armv7l/wheel/cryodrgn/commands_utils
2024-05-26T09:48:50,915   copying build/lib/cryodrgn/commands_utils/invert_contrast.py -> build/bdist.linux-armv7l/wheel/cryodrgn/commands_utils
2024-05-26T09:48:50,917   copying build/lib/cryodrgn/commands_utils/select_random.py -> build/bdist.linux-armv7l/wheel/cryodrgn/commands_utils
2024-05-26T09:48:50,919   copying build/lib/cryodrgn/commands_utils/view_mrcs.py -> build/bdist.linux-armv7l/wheel/cryodrgn/commands_utils
2024-05-26T09:48:50,920   copying build/lib/cryodrgn/commands_utils/filter_star.py -> build/bdist.linux-armv7l/wheel/cryodrgn/commands_utils
2024-05-26T09:48:50,922   copying build/lib/cryodrgn/commands_utils/concat_pkls.py -> build/bdist.linux-armv7l/wheel/cryodrgn/commands_utils
2024-05-26T09:48:50,924   copying build/lib/cryodrgn/commands_utils/flip_hand.py -> build/bdist.linux-armv7l/wheel/cryodrgn/commands_utils
2024-05-26T09:48:50,925   copying build/lib/cryodrgn/commands_utils/fsc.py -> build/bdist.linux-armv7l/wheel/cryodrgn/commands_utils
2024-05-26T09:48:50,927   copying build/lib/cryodrgn/commands_utils/gen_mask.py -> build/bdist.linux-armv7l/wheel/cryodrgn/commands_utils
2024-05-26T09:48:50,929   copying build/lib/cryodrgn/analysis.py -> build/bdist.linux-armv7l/wheel/cryodrgn
2024-05-26T09:48:50,931   copying build/lib/cryodrgn/losses.py -> build/bdist.linux-armv7l/wheel/cryodrgn
2024-05-26T09:48:50,933   copying build/lib/cryodrgn/shift_grid.py -> build/bdist.linux-armv7l/wheel/cryodrgn
2024-05-26T09:48:50,935   copying build/lib/cryodrgn/lattice.py -> build/bdist.linux-armv7l/wheel/cryodrgn
2024-05-26T09:48:50,937   copying build/lib/cryodrgn/starfile.py -> build/bdist.linux-armv7l/wheel/cryodrgn
2024-05-26T09:48:50,939   copying build/lib/cryodrgn/source.py -> build/bdist.linux-armv7l/wheel/cryodrgn
2024-05-26T09:48:50,941   copying build/lib/cryodrgn/__init__.py -> build/bdist.linux-armv7l/wheel/cryodrgn
2024-05-26T09:48:50,943   copying build/lib/cryodrgn/pose.py -> build/bdist.linux-armv7l/wheel/cryodrgn
2024-05-26T09:48:50,945   copying build/lib/cryodrgn/pose_search.py -> build/bdist.linux-armv7l/wheel/cryodrgn
2024-05-26T09:48:50,947   copying build/lib/cryodrgn/shift_grid3.py -> build/bdist.linux-armv7l/wheel/cryodrgn
2024-05-26T09:48:50,949   copying build/lib/cryodrgn/beta_schedule.py -> build/bdist.linux-armv7l/wheel/cryodrgn
2024-05-26T09:48:50,951   creating build/bdist.linux-armv7l/wheel/cryodrgn/commands
2024-05-26T09:48:50,952   copying build/lib/cryodrgn/commands/filter.py -> build/bdist.linux-armv7l/wheel/cryodrgn/commands
2024-05-26T09:48:50,954   copying build/lib/cryodrgn/commands/graph_traversal.py -> build/bdist.linux-armv7l/wheel/cryodrgn/commands
2024-05-26T09:48:50,957   copying build/lib/cryodrgn/commands/backproject_voxel.py -> build/bdist.linux-armv7l/wheel/cryodrgn/commands
2024-05-26T09:48:50,959   copying build/lib/cryodrgn/commands/analyze.py -> build/bdist.linux-armv7l/wheel/cryodrgn/commands
2024-05-26T09:48:50,961   copying build/lib/cryodrgn/commands/parse_pose_csparc.py -> build/bdist.linux-armv7l/wheel/cryodrgn/commands
2024-05-26T09:48:50,963   copying build/lib/cryodrgn/commands/analyze_landscape.py -> build/bdist.linux-armv7l/wheel/cryodrgn/commands
2024-05-26T09:48:50,965   copying build/lib/cryodrgn/commands/analyze_landscape_full.py -> build/bdist.linux-armv7l/wheel/cryodrgn/commands
2024-05-26T09:48:50,968   copying build/lib/cryodrgn/commands/parse_ctf_csparc.py -> build/bdist.linux-armv7l/wheel/cryodrgn/commands
2024-05-26T09:48:50,969   copying build/lib/cryodrgn/commands/eval_vol.py -> build/bdist.linux-armv7l/wheel/cryodrgn/commands
2024-05-26T09:48:50,971   copying build/lib/cryodrgn/commands/parse_ctf_star.py -> build/bdist.linux-armv7l/wheel/cryodrgn/commands
2024-05-26T09:48:50,973   copying build/lib/cryodrgn/commands/view_config.py -> build/bdist.linux-armv7l/wheel/cryodrgn/commands
2024-05-26T09:48:50,975   copying build/lib/cryodrgn/commands/eval_images.py -> build/bdist.linux-armv7l/wheel/cryodrgn/commands
2024-05-26T09:48:50,977   copying build/lib/cryodrgn/commands/abinit_het.py -> build/bdist.linux-armv7l/wheel/cryodrgn/commands
2024-05-26T09:48:50,980   copying build/lib/cryodrgn/commands/preprocess.py -> build/bdist.linux-armv7l/wheel/cryodrgn/commands
2024-05-26T09:48:50,982   copying build/lib/cryodrgn/commands/parse_pose_star.py -> build/bdist.linux-armv7l/wheel/cryodrgn/commands
2024-05-26T09:48:50,983   copying build/lib/cryodrgn/commands/__init__.py -> build/bdist.linux-armv7l/wheel/cryodrgn/commands
2024-05-26T09:48:50,985   copying build/lib/cryodrgn/commands/train_vae.py -> build/bdist.linux-armv7l/wheel/cryodrgn/commands
2024-05-26T09:48:50,988   copying build/lib/cryodrgn/commands/direct_traversal.py -> build/bdist.linux-armv7l/wheel/cryodrgn/commands
2024-05-26T09:48:50,989   copying build/lib/cryodrgn/commands/abinit_homo.py -> build/bdist.linux-armv7l/wheel/cryodrgn/commands
2024-05-26T09:48:50,992   copying build/lib/cryodrgn/commands/pc_traversal.py -> build/bdist.linux-armv7l/wheel/cryodrgn/commands
2024-05-26T09:48:50,994   copying build/lib/cryodrgn/commands/train_nn.py -> build/bdist.linux-armv7l/wheel/cryodrgn/commands
2024-05-26T09:48:50,996   copying build/lib/cryodrgn/commands/downsample.py -> build/bdist.linux-armv7l/wheel/cryodrgn/commands
2024-05-26T09:48:50,998   copying build/lib/cryodrgn/ctf.py -> build/bdist.linux-armv7l/wheel/cryodrgn
2024-05-26T09:48:51,000   copying build/lib/cryodrgn/so3_grid.py -> build/bdist.linux-armv7l/wheel/cryodrgn
2024-05-26T09:48:51,002   running install_egg_info
2024-05-26T09:48:51,008   Copying cryodrgn.egg-info to build/bdist.linux-armv7l/wheel/cryodrgn-3.3.2-py3.9.egg-info
2024-05-26T09:48:51,022   running install_scripts
2024-05-26T09:48:51,049   creating build/bdist.linux-armv7l/wheel/cryodrgn-3.3.2.dist-info/WHEEL
2024-05-26T09:48:51,052   creating '/tmp/pip-wheel-m6kewor1/.tmp-cd5ga614/cryodrgn-3.3.2-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2024-05-26T09:48:51,054   adding 'cryodrgn/__init__.py'
2024-05-26T09:48:51,056   adding 'cryodrgn/_version.py'
2024-05-26T09:48:51,059   adding 'cryodrgn/analysis.py'
2024-05-26T09:48:51,060   adding 'cryodrgn/beta_schedule.py'
2024-05-26T09:48:51,062   adding 'cryodrgn/command_line.py'
2024-05-26T09:48:51,063   adding 'cryodrgn/config.py'
2024-05-26T09:48:51,064   adding 'cryodrgn/ctf.py'
2024-05-26T09:48:51,067   adding 'cryodrgn/dataset.py'
2024-05-26T09:48:51,068   adding 'cryodrgn/fft.py'
2024-05-26T09:48:51,844   adding 'cryodrgn/healpy_grid.json'
2024-05-26T09:48:51,909   adding 'cryodrgn/lattice.py'
2024-05-26T09:48:51,911   adding 'cryodrgn/lie_tools.py'
2024-05-26T09:48:51,912   adding 'cryodrgn/losses.py'
2024-05-26T09:48:51,913   adding 'cryodrgn/make_healpy.py'
2024-05-26T09:48:51,917   adding 'cryodrgn/models.py'
2024-05-26T09:48:51,919   adding 'cryodrgn/mrc.py'
2024-05-26T09:48:51,921   adding 'cryodrgn/pose.py'
2024-05-26T09:48:51,923   adding 'cryodrgn/pose_search.py'
2024-05-26T09:48:51,925   adding 'cryodrgn/shift_grid.py'
2024-05-26T09:48:51,926   adding 'cryodrgn/shift_grid3.py'
2024-05-26T09:48:51,928   adding 'cryodrgn/so3_grid.py'
2024-05-26T09:48:51,930   adding 'cryodrgn/source.py'
2024-05-26T09:48:51,932   adding 'cryodrgn/starfile.py'
2024-05-26T09:48:51,933   adding 'cryodrgn/utils.py'
2024-05-26T09:48:51,935   adding 'cryodrgn/commands/__init__.py'
2024-05-26T09:48:51,939   adding 'cryodrgn/commands/abinit_het.py'
2024-05-26T09:48:51,942   adding 'cryodrgn/commands/abinit_homo.py'
2024-05-26T09:48:51,945   adding 'cryodrgn/commands/analyze.py'
2024-05-26T09:48:51,947   adding 'cryodrgn/commands/analyze_landscape.py'
2024-05-26T09:48:51,950   adding 'cryodrgn/commands/analyze_landscape_full.py'
2024-05-26T09:48:51,952   adding 'cryodrgn/commands/backproject_voxel.py'
2024-05-26T09:48:51,953   adding 'cryodrgn/commands/direct_traversal.py'
2024-05-26T09:48:51,955   adding 'cryodrgn/commands/downsample.py'
2024-05-26T09:48:51,957   adding 'cryodrgn/commands/eval_images.py'
2024-05-26T09:48:51,959   adding 'cryodrgn/commands/eval_vol.py'
2024-05-26T09:48:51,961   adding 'cryodrgn/commands/filter.py'
2024-05-26T09:48:51,963   adding 'cryodrgn/commands/graph_traversal.py'
2024-05-26T09:48:51,964   adding 'cryodrgn/commands/parse_ctf_csparc.py'
2024-05-26T09:48:51,966   adding 'cryodrgn/commands/parse_ctf_star.py'
2024-05-26T09:48:51,967   adding 'cryodrgn/commands/parse_pose_csparc.py'
2024-05-26T09:48:51,969   adding 'cryodrgn/commands/parse_pose_star.py'
2024-05-26T09:48:51,970   adding 'cryodrgn/commands/pc_traversal.py'
2024-05-26T09:48:51,972   adding 'cryodrgn/commands/preprocess.py'
2024-05-26T09:48:51,974   adding 'cryodrgn/commands/train_nn.py'
2024-05-26T09:48:51,978   adding 'cryodrgn/commands/train_vae.py'
2024-05-26T09:48:51,980   adding 'cryodrgn/commands/view_config.py'
2024-05-26T09:48:51,981   adding 'cryodrgn/commands_utils/__init__.py'
2024-05-26T09:48:51,983   adding 'cryodrgn/commands_utils/add_psize.py'
2024-05-26T09:48:51,984   adding 'cryodrgn/commands_utils/clean.py'
2024-05-26T09:48:51,986   adding 'cryodrgn/commands_utils/concat_pkls.py'
2024-05-26T09:48:51,987   adding 'cryodrgn/commands_utils/filter_mrcs.py'
2024-05-26T09:48:51,988   adding 'cryodrgn/commands_utils/filter_pkl.py'
2024-05-26T09:48:51,989   adding 'cryodrgn/commands_utils/filter_star.py'
2024-05-26T09:48:51,991   adding 'cryodrgn/commands_utils/flip_hand.py'
2024-05-26T09:48:51,992   adding 'cryodrgn/commands_utils/fsc.py'
2024-05-26T09:48:51,994   adding 'cryodrgn/commands_utils/gen_mask.py'
2024-05-26T09:48:51,995   adding 'cryodrgn/commands_utils/invert_contrast.py'
2024-05-26T09:48:51,996   adding 'cryodrgn/commands_utils/phase_flip.py'
2024-05-26T09:48:51,998   adding 'cryodrgn/commands_utils/plot_fsc.py'
2024-05-26T09:48:51,999   adding 'cryodrgn/commands_utils/select_clusters.py'
2024-05-26T09:48:52,001   adding 'cryodrgn/commands_utils/select_random.py'
2024-05-26T09:48:52,002   adding 'cryodrgn/commands_utils/translate_mrcs.py'
2024-05-26T09:48:52,004   adding 'cryodrgn/commands_utils/view_cs_header.py'
2024-05-26T09:48:52,005   adding 'cryodrgn/commands_utils/view_header.py'
2024-05-26T09:48:52,007   adding 'cryodrgn/commands_utils/view_mrcs.py'
2024-05-26T09:48:52,008   adding 'cryodrgn/commands_utils/write_cs.py'
2024-05-26T09:48:52,010   adding 'cryodrgn/commands_utils/write_star.py'
2024-05-26T09:48:52,013   adding 'cryodrgn/templates/cryoDRGN_ET_viz_template.ipynb'
2024-05-26T09:48:52,014   adding 'cryodrgn/templates/cryoDRGN_analyze_landscape_template.ipynb'
2024-05-26T09:48:52,016   adding 'cryodrgn/templates/cryoDRGN_figures_template.ipynb'
2024-05-26T09:48:52,019   adding 'cryodrgn/templates/cryoDRGN_filtering_template.ipynb'
2024-05-26T09:48:52,022   adding 'cryodrgn/templates/cryoDRGN_viz_template.ipynb'
2024-05-26T09:48:52,029   adding 'cryodrgn-3.3.2.dist-info/LICENSE.txt'
2024-05-26T09:48:52,034   adding 'cryodrgn-3.3.2.dist-info/METADATA'
2024-05-26T09:48:52,035   adding 'cryodrgn-3.3.2.dist-info/WHEEL'
2024-05-26T09:48:52,036   adding 'cryodrgn-3.3.2.dist-info/entry_points.txt'
2024-05-26T09:48:52,037   adding 'cryodrgn-3.3.2.dist-info/top_level.txt'
2024-05-26T09:48:52,039   adding 'cryodrgn-3.3.2.dist-info/RECORD'
2024-05-26T09:48:52,061   removing build/bdist.linux-armv7l/wheel
2024-05-26T09:48:52,201   Building wheel for cryodrgn (pyproject.toml): finished with status 'done'
2024-05-26T09:48:52,234   Created wheel for cryodrgn: filename=cryodrgn-3.3.2-py3-none-any.whl size=1162617 sha256=23d9324f04d89f7f6e7fcbfc4a4c90a979798fd294a840d8b07c919f6aef1817
2024-05-26T09:48:52,235   Stored in directory: /tmp/pip-ephem-wheel-cache-xxs7ah0e/wheels/e4/c4/6f/6c54bdef91b8e0b0b37e757411c133f2206968138eab1998a5
2024-05-26T09:48:52,253 Successfully built cryodrgn
2024-05-26T09:48:52,288 Removed build tracker: '/tmp/pip-build-tracker-n3bevfh6'