2024-05-27T22:33:44,807 Created temporary directory: /tmp/pip-build-tracker-zu5c0mbs 2024-05-27T22:33:44,808 Initialized build tracking at /tmp/pip-build-tracker-zu5c0mbs 2024-05-27T22:33:44,808 Created build tracker: /tmp/pip-build-tracker-zu5c0mbs 2024-05-27T22:33:44,809 Entered build tracker: /tmp/pip-build-tracker-zu5c0mbs 2024-05-27T22:33:44,810 Created temporary directory: /tmp/pip-wheel-6ahat5df 2024-05-27T22:33:44,813 Created temporary directory: /tmp/pip-ephem-wheel-cache-pviprr01 2024-05-27T22:33:44,835 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2024-05-27T22:33:44,838 2 location(s) to search for versions of smallgenomeutilities: 2024-05-27T22:33:44,838 * https://pypi.org/simple/smallgenomeutilities/ 2024-05-27T22:33:44,838 * https://www.piwheels.org/simple/smallgenomeutilities/ 2024-05-27T22:33:44,839 Fetching project page and analyzing links: https://pypi.org/simple/smallgenomeutilities/ 2024-05-27T22:33:44,839 Getting page https://pypi.org/simple/smallgenomeutilities/ 2024-05-27T22:33:44,841 Found index url https://pypi.org/simple/ 2024-05-27T22:33:45,057 Fetched page https://pypi.org/simple/smallgenomeutilities/ as application/vnd.pypi.simple.v1+json 2024-05-27T22:33:45,060 Found link https://files.pythonhosted.org/packages/16/30/b2b629f57a7e1d88c1be86ff30314988b458d70eda0d0c46ea91aa470e77/smallgenomeutilities-0.1.tar.gz (from https://pypi.org/simple/smallgenomeutilities/), version: 0.1 2024-05-27T22:33:45,061 Skipping link: No binaries permitted for smallgenomeutilities: https://files.pythonhosted.org/packages/a7/a9/64e76ab93a7eeb8be7dcbd89d445685b4809d33d0dcc79226de401b6705e/smallgenomeutilities-0.2-py3-none-any.whl (from https://pypi.org/simple/smallgenomeutilities/) 2024-05-27T22:33:45,062 Found link https://files.pythonhosted.org/packages/f8/e2/54b075294a3247595abf9f7d7314eddc04c77a049398157514b65087fe6a/smallgenomeutilities-0.2.tar.gz (from https://pypi.org/simple/smallgenomeutilities/), version: 0.2 2024-05-27T22:33:45,062 Skipping link: No binaries permitted for smallgenomeutilities: https://files.pythonhosted.org/packages/46/20/dc6806fb9ee6714c06aa3e65149e840d562567b3d9ed66dc5fdfea471ab4/smallgenomeutilities-0.2.1-py3-none-any.whl (from https://pypi.org/simple/smallgenomeutilities/) 2024-05-27T22:33:45,063 Found link https://files.pythonhosted.org/packages/a3/9c/4b90373c6347be8f70d9c582f40d2709ce87ab038fb7cf89e4c3472380e0/smallgenomeutilities-0.2.1.tar.gz (from https://pypi.org/simple/smallgenomeutilities/), version: 0.2.1 2024-05-27T22:33:45,064 Skipping link: No binaries permitted for smallgenomeutilities: https://files.pythonhosted.org/packages/ff/45/bacabada0c0cab8ebdef1ed87f4f0c041da2b6d7bc3c8b8fdae999ebf364/smallgenomeutilities-0.3.0-py3-none-any.whl (from https://pypi.org/simple/smallgenomeutilities/) 2024-05-27T22:33:45,064 Found link https://files.pythonhosted.org/packages/4d/43/7fdabcf4fee88fca8f1d66d548d77df70312f2b6f974b6a2d7e568b17914/smallgenomeutilities-0.3.0.tar.gz (from https://pypi.org/simple/smallgenomeutilities/), version: 0.3.0 2024-05-27T22:33:45,065 Skipping link: No binaries permitted for smallgenomeutilities: https://files.pythonhosted.org/packages/36/36/6d0cffe6b2c8992386f68c368b24227d4934e3ddd6c53c820610132b56e4/smallgenomeutilities-0.4.0-py3-none-any.whl (from https://pypi.org/simple/smallgenomeutilities/) (requires-python:>=3.7) 2024-05-27T22:33:45,066 Found link https://files.pythonhosted.org/packages/1e/77/8ea697034e10e42f1d2b4800063531ceb3599bc3fb9a8b25c94c2c37622b/smallgenomeutilities-0.4.0.tar.gz (from https://pypi.org/simple/smallgenomeutilities/) (requires-python:>=3.7), version: 0.4.0 2024-05-27T22:33:45,066 Skipping link: No binaries permitted for smallgenomeutilities: https://files.pythonhosted.org/packages/e5/a1/266b7a8f0c7518746f53d6ee50cd04548ef176dc093198cacac0351a8131/smallgenomeutilities-0.4.1-py3-none-any.whl (from https://pypi.org/simple/smallgenomeutilities/) (requires-python:>=3.7) 2024-05-27T22:33:45,067 Found link https://files.pythonhosted.org/packages/63/40/9e88ea1f2ff942b1c22d3ac91a99313b6d6689ec4620da43e7a5d4bbaa0e/smallgenomeutilities-0.4.1.tar.gz (from https://pypi.org/simple/smallgenomeutilities/) (requires-python:>=3.7), version: 0.4.1 2024-05-27T22:33:45,068 Fetching project page and analyzing links: https://www.piwheels.org/simple/smallgenomeutilities/ 2024-05-27T22:33:45,069 Getting page https://www.piwheels.org/simple/smallgenomeutilities/ 2024-05-27T22:33:45,071 Found index url https://www.piwheels.org/simple/ 2024-05-27T22:33:45,231 Fetched page https://www.piwheels.org/simple/smallgenomeutilities/ as text/html 2024-05-27T22:33:45,233 Skipping link: No binaries permitted for smallgenomeutilities: https://www.piwheels.org/simple/smallgenomeutilities/smallgenomeutilities-0.4.0-py3-none-any.whl#sha256=9196cdb6e8015cb926befacb7842ebd0b89c754226d1c931f39e91930f159ba1 (from https://www.piwheels.org/simple/smallgenomeutilities/) (requires-python:>=3.7) 2024-05-27T22:33:45,234 Skipping link: No binaries permitted for smallgenomeutilities: https://www.piwheels.org/simple/smallgenomeutilities/smallgenomeutilities-0.3.0-py3-none-any.whl#sha256=7345eaf9928bc8e5ceefdbe1006e7a5feff83db6344087502f76c6a7df54a923 (from https://www.piwheels.org/simple/smallgenomeutilities/) 2024-05-27T22:33:45,234 Skipping link: No binaries permitted for smallgenomeutilities: https://www.piwheels.org/simple/smallgenomeutilities/smallgenomeutilities-0.2.1-py3-none-any.whl#sha256=3268f0074ae0d03478f3bab89461209c099243f81816afc80cfd3ebe7eb261e1 (from https://www.piwheels.org/simple/smallgenomeutilities/) 2024-05-27T22:33:45,235 Skipping link: No binaries permitted for smallgenomeutilities: https://www.piwheels.org/simple/smallgenomeutilities/smallgenomeutilities-0.2-py3-none-any.whl#sha256=e1c515f237e091c09aa74a37ad3b8bbf6c04be35a9a8fac541da2617d7c07307 (from https://www.piwheels.org/simple/smallgenomeutilities/) 2024-05-27T22:33:45,235 Skipping link: No binaries permitted for smallgenomeutilities: https://www.piwheels.org/simple/smallgenomeutilities/smallgenomeutilities-0.1-py3-none-any.whl#sha256=23c27ec962745bdd0aa775c2c604bbd5aca90d10eb88afc989f1092612acfa8d (from https://www.piwheels.org/simple/smallgenomeutilities/) 2024-05-27T22:33:45,236 Skipping link: not a file: https://www.piwheels.org/simple/smallgenomeutilities/ 2024-05-27T22:33:45,236 Skipping link: not a file: https://pypi.org/simple/smallgenomeutilities/ 2024-05-27T22:33:45,257 Given no hashes to check 1 links for project 'smallgenomeutilities': discarding no candidates 2024-05-27T22:33:45,276 Collecting smallgenomeutilities==0.4.1 2024-05-27T22:33:45,279 Created temporary directory: /tmp/pip-unpack-nlyqcicl 2024-05-27T22:33:45,496 Downloading smallgenomeutilities-0.4.1.tar.gz (69.3 MB) 2024-05-27T22:33:58,526 Added smallgenomeutilities==0.4.1 from https://files.pythonhosted.org/packages/63/40/9e88ea1f2ff942b1c22d3ac91a99313b6d6689ec4620da43e7a5d4bbaa0e/smallgenomeutilities-0.4.1.tar.gz to build tracker '/tmp/pip-build-tracker-zu5c0mbs' 2024-05-27T22:33:58,533 Created temporary directory: /tmp/pip-build-env-8hjj1zi5 2024-05-27T22:33:58,538 Installing build dependencies: started 2024-05-27T22:33:58,540 Running command pip subprocess to install build dependencies 2024-05-27T22:33:59,717 Using pip 24.0 from /home/piwheels/.local/lib/python3.11/site-packages/pip (python 3.11) 2024-05-27T22:34:00,229 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2024-05-27T22:34:01,961 Collecting setuptools>=63 2024-05-27T22:34:01,976 Using cached https://www.piwheels.org/simple/setuptools/setuptools-70.0.0-py3-none-any.whl (863 kB) 2024-05-27T22:34:02,306 Collecting setuptools_scm>=6.2 (from setuptools_scm[toml]>=6.2) 2024-05-27T22:34:02,320 Using cached https://www.piwheels.org/simple/setuptools-scm/setuptools_scm-8.1.0-py3-none-any.whl (43 kB) 2024-05-27T22:34:02,643 Collecting packaging>=20 (from setuptools_scm>=6.2->setuptools_scm[toml]>=6.2) 2024-05-27T22:34:02,657 Using cached https://www.piwheels.org/simple/packaging/packaging-24.0-py3-none-any.whl (53 kB) 2024-05-27T22:34:05,377 Installing collected packages: setuptools, packaging, setuptools_scm 2024-05-27T22:34:08,491 Successfully installed packaging-24.0 setuptools-70.0.0 setuptools_scm-8.1.0 2024-05-27T22:34:09,002 Installing build dependencies: finished with status 'done' 2024-05-27T22:34:09,005 Getting requirements to build wheel: started 2024-05-27T22:34:09,006 Running command Getting requirements to build wheel 2024-05-27T22:34:09,892 running egg_info 2024-05-27T22:34:09,897 writing smallgenomeutilities.egg-info/PKG-INFO 2024-05-27T22:34:09,902 writing dependency_links to smallgenomeutilities.egg-info/dependency_links.txt 2024-05-27T22:34:09,905 writing requirements to smallgenomeutilities.egg-info/requires.txt 2024-05-27T22:34:09,906 writing top-level names to smallgenomeutilities.egg-info/top_level.txt 2024-05-27T22:34:09,948 ERROR setuptools_scm._file_finders.git listing git files failed - pretending there aren't any 2024-05-27T22:34:09,952 WARNING setuptools_scm._file_finders.git git archive detected - fallback to listing all files 2024-05-27T22:34:09,973 adding license file 'LICENSE' 2024-05-27T22:34:09,978 writing manifest file 'smallgenomeutilities.egg-info/SOURCES.txt' 2024-05-27T22:34:10,100 Getting requirements to build wheel: finished with status 'done' 2024-05-27T22:34:10,111 Installing backend dependencies: started 2024-05-27T22:34:10,112 Running command pip subprocess to install backend dependencies 2024-05-27T22:34:11,260 Using pip 24.0 from /home/piwheels/.local/lib/python3.11/site-packages/pip (python 3.11) 2024-05-27T22:34:11,774 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2024-05-27T22:34:12,281 Collecting wheel 2024-05-27T22:34:12,296 Using cached https://www.piwheels.org/simple/wheel/wheel-0.43.0-py3-none-any.whl (65 kB) 2024-05-27T22:34:14,733 Installing collected packages: wheel 2024-05-27T22:34:14,970 Creating /tmp/pip-build-env-8hjj1zi5/normal/local/bin 2024-05-27T22:34:14,972 changing mode of /tmp/pip-build-env-8hjj1zi5/normal/local/bin/wheel to 755 2024-05-27T22:34:14,983 Successfully installed wheel-0.43.0 2024-05-27T22:34:15,437 Installing backend dependencies: finished with status 'done' 2024-05-27T22:34:15,439 Created temporary directory: /tmp/pip-modern-metadata-igwu1tlr 2024-05-27T22:34:15,442 Preparing metadata (pyproject.toml): started 2024-05-27T22:34:15,443 Running command Preparing metadata (pyproject.toml) 2024-05-27T22:34:16,325 running dist_info 2024-05-27T22:34:16,331 creating /tmp/pip-modern-metadata-igwu1tlr/smallgenomeutilities.egg-info 2024-05-27T22:34:16,337 writing /tmp/pip-modern-metadata-igwu1tlr/smallgenomeutilities.egg-info/PKG-INFO 2024-05-27T22:34:16,342 writing dependency_links to /tmp/pip-modern-metadata-igwu1tlr/smallgenomeutilities.egg-info/dependency_links.txt 2024-05-27T22:34:16,344 writing requirements to /tmp/pip-modern-metadata-igwu1tlr/smallgenomeutilities.egg-info/requires.txt 2024-05-27T22:34:16,345 writing top-level names to /tmp/pip-modern-metadata-igwu1tlr/smallgenomeutilities.egg-info/top_level.txt 2024-05-27T22:34:16,346 writing manifest file '/tmp/pip-modern-metadata-igwu1tlr/smallgenomeutilities.egg-info/SOURCES.txt' 2024-05-27T22:34:16,391 ERROR setuptools_scm._file_finders.git listing git files failed - pretending there aren't any 2024-05-27T22:34:16,395 WARNING setuptools_scm._file_finders.git git archive detected - fallback to listing all files 2024-05-27T22:34:16,422 adding license file 'LICENSE' 2024-05-27T22:34:16,427 writing manifest file '/tmp/pip-modern-metadata-igwu1tlr/smallgenomeutilities.egg-info/SOURCES.txt' 2024-05-27T22:34:16,428 creating '/tmp/pip-modern-metadata-igwu1tlr/smallgenomeutilities-0.4.1.dist-info' 2024-05-27T22:34:16,598 Preparing metadata (pyproject.toml): finished with status 'done' 2024-05-27T22:34:16,606 Source in /tmp/pip-wheel-6ahat5df/smallgenomeutilities_f11c195a9a8d46139110518cdeb50292 has version 0.4.1, which satisfies requirement smallgenomeutilities==0.4.1 from https://files.pythonhosted.org/packages/63/40/9e88ea1f2ff942b1c22d3ac91a99313b6d6689ec4620da43e7a5d4bbaa0e/smallgenomeutilities-0.4.1.tar.gz 2024-05-27T22:34:16,607 Removed smallgenomeutilities==0.4.1 from https://files.pythonhosted.org/packages/63/40/9e88ea1f2ff942b1c22d3ac91a99313b6d6689ec4620da43e7a5d4bbaa0e/smallgenomeutilities-0.4.1.tar.gz from build tracker '/tmp/pip-build-tracker-zu5c0mbs' 2024-05-27T22:34:16,621 Created temporary directory: /tmp/pip-unpack-carbwtg9 2024-05-27T22:34:16,622 Created temporary directory: /tmp/pip-unpack-utjqzh4x 2024-05-27T22:34:16,647 Building wheels for collected packages: smallgenomeutilities 2024-05-27T22:34:16,652 Created temporary directory: /tmp/pip-wheel-_vq0xuh5 2024-05-27T22:34:16,652 Destination directory: /tmp/pip-wheel-_vq0xuh5 2024-05-27T22:34:16,655 Building wheel for smallgenomeutilities (pyproject.toml): started 2024-05-27T22:34:16,656 Running command Building wheel for smallgenomeutilities (pyproject.toml) 2024-05-27T22:34:17,499 running bdist_wheel 2024-05-27T22:34:17,521 running build 2024-05-27T22:34:17,521 running build_py 2024-05-27T22:34:17,529 creating build 2024-05-27T22:34:17,530 creating build/lib 2024-05-27T22:34:17,531 creating build/lib/smallgenomeutilities 2024-05-27T22:34:17,532 copying smallgenomeutilities/__checkPath__.py -> build/lib/smallgenomeutilities 2024-05-27T22:34:17,534 copying smallgenomeutilities/_version.py -> build/lib/smallgenomeutilities 2024-05-27T22:34:17,536 copying smallgenomeutilities/__pileup__.py -> build/lib/smallgenomeutilities 2024-05-27T22:34:17,538 copying smallgenomeutilities/__init__.py -> build/lib/smallgenomeutilities 2024-05-27T22:34:17,540 copying smallgenomeutilities/__mapper_impl__.py -> build/lib/smallgenomeutilities 2024-05-27T22:34:17,541 running egg_info 2024-05-27T22:34:17,546 writing smallgenomeutilities.egg-info/PKG-INFO 2024-05-27T22:34:17,551 writing dependency_links to smallgenomeutilities.egg-info/dependency_links.txt 2024-05-27T22:34:17,552 writing requirements to smallgenomeutilities.egg-info/requires.txt 2024-05-27T22:34:17,553 writing top-level names to smallgenomeutilities.egg-info/top_level.txt 2024-05-27T22:34:17,579 ERROR setuptools_scm._file_finders.git listing git files failed - pretending there aren't any 2024-05-27T22:34:17,582 WARNING setuptools_scm._file_finders.git git archive detected - fallback to listing all files 2024-05-27T22:34:17,604 adding license file 'LICENSE' 2024-05-27T22:34:17,608 writing manifest file 'smallgenomeutilities.egg-info/SOURCES.txt' 2024-05-27T22:34:17,612 running build_scripts 2024-05-27T22:34:17,613 creating build/scripts-3.11 2024-05-27T22:34:17,614 copying and adjusting scripts/aln2basecnt -> build/scripts-3.11 2024-05-27T22:34:17,616 copying and adjusting scripts/compute_mds -> build/scripts-3.11 2024-05-27T22:34:17,618 copying and adjusting scripts/convert_qr -> build/scripts-3.11 2024-05-27T22:34:17,620 copying and adjusting scripts/convert_reference -> build/scripts-3.11 2024-05-27T22:34:17,623 copying and adjusting scripts/coverage -> build/scripts-3.11 2024-05-27T22:34:17,625 copying and adjusting scripts/coverage_stats -> build/scripts-3.11 2024-05-27T22:34:17,626 copying and adjusting scripts/extract_consensus -> build/scripts-3.11 2024-05-27T22:34:17,629 copying and adjusting scripts/extract_coverage_intervals -> build/scripts-3.11 2024-05-27T22:34:17,632 copying and adjusting scripts/extract_sam -> build/scripts-3.11 2024-05-27T22:34:17,634 copying and adjusting scripts/extract_seq -> build/scripts-3.11 2024-05-27T22:34:17,636 copying and adjusting scripts/frameshift_deletions_checks -> build/scripts-3.11 2024-05-27T22:34:17,641 copying and adjusting scripts/gather_coverage -> build/scripts-3.11 2024-05-27T22:34:17,642 copying and adjusting scripts/mapper -> build/scripts-3.11 2024-05-27T22:34:17,644 copying and adjusting scripts/min_coverage -> build/scripts-3.11 2024-05-27T22:34:17,645 copying and adjusting scripts/minority_freq -> build/scripts-3.11 2024-05-27T22:34:17,648 copying and adjusting scripts/pair_sequences -> build/scripts-3.11 2024-05-27T22:34:17,650 copying and adjusting scripts/predict_num_reads -> build/scripts-3.11 2024-05-27T22:34:17,652 copying and adjusting scripts/prepare_primers -> build/scripts-3.11 2024-05-27T22:34:17,654 copying and adjusting scripts/remove_gaps_msa -> build/scripts-3.11 2024-05-27T22:34:17,655 changing mode of build/scripts-3.11/aln2basecnt from 644 to 755 2024-05-27T22:34:17,655 changing mode of build/scripts-3.11/compute_mds from 644 to 755 2024-05-27T22:34:17,656 changing mode of build/scripts-3.11/convert_qr from 644 to 755 2024-05-27T22:34:17,657 changing mode of build/scripts-3.11/convert_reference from 644 to 755 2024-05-27T22:34:17,657 changing mode of build/scripts-3.11/coverage from 644 to 755 2024-05-27T22:34:17,657 changing mode of build/scripts-3.11/coverage_stats from 644 to 755 2024-05-27T22:34:17,658 changing mode of build/scripts-3.11/extract_consensus from 644 to 755 2024-05-27T22:34:17,658 changing mode of build/scripts-3.11/extract_coverage_intervals from 644 to 755 2024-05-27T22:34:17,659 changing mode of build/scripts-3.11/extract_sam from 644 to 755 2024-05-27T22:34:17,659 changing mode of build/scripts-3.11/extract_seq from 644 to 755 2024-05-27T22:34:17,660 changing mode of build/scripts-3.11/frameshift_deletions_checks from 644 to 755 2024-05-27T22:34:17,660 changing mode of build/scripts-3.11/gather_coverage from 644 to 755 2024-05-27T22:34:17,661 changing mode of build/scripts-3.11/mapper from 644 to 755 2024-05-27T22:34:17,661 changing mode of build/scripts-3.11/min_coverage from 644 to 755 2024-05-27T22:34:17,662 changing mode of build/scripts-3.11/minority_freq from 644 to 755 2024-05-27T22:34:17,662 changing mode of build/scripts-3.11/pair_sequences from 644 to 755 2024-05-27T22:34:17,663 changing mode of build/scripts-3.11/predict_num_reads from 644 to 755 2024-05-27T22:34:17,663 changing mode of build/scripts-3.11/prepare_primers from 644 to 755 2024-05-27T22:34:17,664 changing mode of build/scripts-3.11/remove_gaps_msa from 644 to 755 2024-05-27T22:34:17,672 installing to build/bdist.linux-armv7l/wheel 2024-05-27T22:34:17,673 running install 2024-05-27T22:34:17,698 running install_lib 2024-05-27T22:34:17,703 creating build/bdist.linux-armv7l 2024-05-27T22:34:17,703 creating build/bdist.linux-armv7l/wheel 2024-05-27T22:34:17,705 creating build/bdist.linux-armv7l/wheel/smallgenomeutilities 2024-05-27T22:34:17,706 copying build/lib/smallgenomeutilities/__checkPath__.py -> build/bdist.linux-armv7l/wheel/smallgenomeutilities 2024-05-27T22:34:17,708 copying build/lib/smallgenomeutilities/_version.py -> build/bdist.linux-armv7l/wheel/smallgenomeutilities 2024-05-27T22:34:17,710 copying build/lib/smallgenomeutilities/__pileup__.py -> build/bdist.linux-armv7l/wheel/smallgenomeutilities 2024-05-27T22:34:17,712 copying build/lib/smallgenomeutilities/__init__.py -> build/bdist.linux-armv7l/wheel/smallgenomeutilities 2024-05-27T22:34:17,714 copying build/lib/smallgenomeutilities/__mapper_impl__.py -> build/bdist.linux-armv7l/wheel/smallgenomeutilities 2024-05-27T22:34:17,715 running install_egg_info 2024-05-27T22:34:17,720 Copying smallgenomeutilities.egg-info to build/bdist.linux-armv7l/wheel/smallgenomeutilities-0.4.1-py3.11.egg-info 2024-05-27T22:34:17,733 running install_scripts 2024-05-27T22:34:17,734 creating build/bdist.linux-armv7l/wheel/smallgenomeutilities-0.4.1.data 2024-05-27T22:34:17,735 creating build/bdist.linux-armv7l/wheel/smallgenomeutilities-0.4.1.data/scripts 2024-05-27T22:34:17,736 copying build/scripts-3.11/coverage_stats -> build/bdist.linux-armv7l/wheel/smallgenomeutilities-0.4.1.data/scripts 2024-05-27T22:34:17,739 copying build/scripts-3.11/pair_sequences -> build/bdist.linux-armv7l/wheel/smallgenomeutilities-0.4.1.data/scripts 2024-05-27T22:34:17,741 copying build/scripts-3.11/min_coverage -> build/bdist.linux-armv7l/wheel/smallgenomeutilities-0.4.1.data/scripts 2024-05-27T22:34:17,743 copying build/scripts-3.11/minority_freq -> build/bdist.linux-armv7l/wheel/smallgenomeutilities-0.4.1.data/scripts 2024-05-27T22:34:17,746 copying build/scripts-3.11/prepare_primers -> build/bdist.linux-armv7l/wheel/smallgenomeutilities-0.4.1.data/scripts 2024-05-27T22:34:17,748 copying build/scripts-3.11/remove_gaps_msa -> build/bdist.linux-armv7l/wheel/smallgenomeutilities-0.4.1.data/scripts 2024-05-27T22:34:17,750 copying build/scripts-3.11/extract_coverage_intervals -> build/bdist.linux-armv7l/wheel/smallgenomeutilities-0.4.1.data/scripts 2024-05-27T22:34:17,752 copying build/scripts-3.11/convert_qr -> build/bdist.linux-armv7l/wheel/smallgenomeutilities-0.4.1.data/scripts 2024-05-27T22:34:17,754 copying build/scripts-3.11/extract_consensus -> build/bdist.linux-armv7l/wheel/smallgenomeutilities-0.4.1.data/scripts 2024-05-27T22:34:17,757 copying build/scripts-3.11/mapper -> build/bdist.linux-armv7l/wheel/smallgenomeutilities-0.4.1.data/scripts 2024-05-27T22:34:17,758 copying build/scripts-3.11/coverage -> build/bdist.linux-armv7l/wheel/smallgenomeutilities-0.4.1.data/scripts 2024-05-27T22:34:17,760 copying build/scripts-3.11/gather_coverage -> build/bdist.linux-armv7l/wheel/smallgenomeutilities-0.4.1.data/scripts 2024-05-27T22:34:17,762 copying build/scripts-3.11/predict_num_reads -> build/bdist.linux-armv7l/wheel/smallgenomeutilities-0.4.1.data/scripts 2024-05-27T22:34:17,764 copying build/scripts-3.11/compute_mds -> build/bdist.linux-armv7l/wheel/smallgenomeutilities-0.4.1.data/scripts 2024-05-27T22:34:17,767 copying build/scripts-3.11/frameshift_deletions_checks -> build/bdist.linux-armv7l/wheel/smallgenomeutilities-0.4.1.data/scripts 2024-05-27T22:34:17,770 copying build/scripts-3.11/extract_sam -> build/bdist.linux-armv7l/wheel/smallgenomeutilities-0.4.1.data/scripts 2024-05-27T22:34:17,772 copying build/scripts-3.11/extract_seq -> build/bdist.linux-armv7l/wheel/smallgenomeutilities-0.4.1.data/scripts 2024-05-27T22:34:17,774 copying build/scripts-3.11/convert_reference -> build/bdist.linux-armv7l/wheel/smallgenomeutilities-0.4.1.data/scripts 2024-05-27T22:34:17,777 copying build/scripts-3.11/aln2basecnt -> build/bdist.linux-armv7l/wheel/smallgenomeutilities-0.4.1.data/scripts 2024-05-27T22:34:17,779 changing mode of build/bdist.linux-armv7l/wheel/smallgenomeutilities-0.4.1.data/scripts/coverage_stats to 755 2024-05-27T22:34:17,780 changing mode of build/bdist.linux-armv7l/wheel/smallgenomeutilities-0.4.1.data/scripts/pair_sequences to 755 2024-05-27T22:34:17,780 changing mode of build/bdist.linux-armv7l/wheel/smallgenomeutilities-0.4.1.data/scripts/min_coverage to 755 2024-05-27T22:34:17,781 changing mode of build/bdist.linux-armv7l/wheel/smallgenomeutilities-0.4.1.data/scripts/minority_freq to 755 2024-05-27T22:34:17,781 changing mode of build/bdist.linux-armv7l/wheel/smallgenomeutilities-0.4.1.data/scripts/prepare_primers to 755 2024-05-27T22:34:17,782 changing mode of build/bdist.linux-armv7l/wheel/smallgenomeutilities-0.4.1.data/scripts/remove_gaps_msa to 755 2024-05-27T22:34:17,782 changing mode of build/bdist.linux-armv7l/wheel/smallgenomeutilities-0.4.1.data/scripts/extract_coverage_intervals to 755 2024-05-27T22:34:17,782 changing mode of build/bdist.linux-armv7l/wheel/smallgenomeutilities-0.4.1.data/scripts/convert_qr to 755 2024-05-27T22:34:17,783 changing mode of build/bdist.linux-armv7l/wheel/smallgenomeutilities-0.4.1.data/scripts/extract_consensus to 755 2024-05-27T22:34:17,783 changing mode of build/bdist.linux-armv7l/wheel/smallgenomeutilities-0.4.1.data/scripts/mapper to 755 2024-05-27T22:34:17,784 changing mode of build/bdist.linux-armv7l/wheel/smallgenomeutilities-0.4.1.data/scripts/coverage to 755 2024-05-27T22:34:17,784 changing mode of build/bdist.linux-armv7l/wheel/smallgenomeutilities-0.4.1.data/scripts/gather_coverage to 755 2024-05-27T22:34:17,785 changing mode of build/bdist.linux-armv7l/wheel/smallgenomeutilities-0.4.1.data/scripts/predict_num_reads to 755 2024-05-27T22:34:17,786 changing mode of build/bdist.linux-armv7l/wheel/smallgenomeutilities-0.4.1.data/scripts/compute_mds to 755 2024-05-27T22:34:17,786 changing mode of build/bdist.linux-armv7l/wheel/smallgenomeutilities-0.4.1.data/scripts/frameshift_deletions_checks to 755 2024-05-27T22:34:17,787 changing mode of build/bdist.linux-armv7l/wheel/smallgenomeutilities-0.4.1.data/scripts/extract_sam to 755 2024-05-27T22:34:17,787 changing mode of build/bdist.linux-armv7l/wheel/smallgenomeutilities-0.4.1.data/scripts/extract_seq to 755 2024-05-27T22:34:17,788 changing mode of build/bdist.linux-armv7l/wheel/smallgenomeutilities-0.4.1.data/scripts/convert_reference to 755 2024-05-27T22:34:17,789 changing mode of build/bdist.linux-armv7l/wheel/smallgenomeutilities-0.4.1.data/scripts/aln2basecnt to 755 2024-05-27T22:34:17,807 creating build/bdist.linux-armv7l/wheel/smallgenomeutilities-0.4.1.dist-info/WHEEL 2024-05-27T22:34:17,810 creating '/tmp/pip-wheel-_vq0xuh5/.tmp-hvpup1uo/smallgenomeutilities-0.4.1-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2024-05-27T22:34:17,812 adding 'smallgenomeutilities/__checkPath__.py' 2024-05-27T22:34:17,813 adding 'smallgenomeutilities/__init__.py' 2024-05-27T22:34:17,815 adding 'smallgenomeutilities/__mapper_impl__.py' 2024-05-27T22:34:17,816 adding 'smallgenomeutilities/__pileup__.py' 2024-05-27T22:34:17,818 adding 'smallgenomeutilities/_version.py' 2024-05-27T22:34:17,820 adding 'smallgenomeutilities-0.4.1.data/scripts/aln2basecnt' 2024-05-27T22:34:17,822 adding 'smallgenomeutilities-0.4.1.data/scripts/compute_mds' 2024-05-27T22:34:17,824 adding 'smallgenomeutilities-0.4.1.data/scripts/convert_qr' 2024-05-27T22:34:17,827 adding 'smallgenomeutilities-0.4.1.data/scripts/convert_reference' 2024-05-27T22:34:17,829 adding 'smallgenomeutilities-0.4.1.data/scripts/coverage' 2024-05-27T22:34:17,830 adding 'smallgenomeutilities-0.4.1.data/scripts/coverage_stats' 2024-05-27T22:34:17,832 adding 'smallgenomeutilities-0.4.1.data/scripts/extract_consensus' 2024-05-27T22:34:17,835 adding 'smallgenomeutilities-0.4.1.data/scripts/extract_coverage_intervals' 2024-05-27T22:34:17,836 adding 'smallgenomeutilities-0.4.1.data/scripts/extract_sam' 2024-05-27T22:34:17,838 adding 'smallgenomeutilities-0.4.1.data/scripts/extract_seq' 2024-05-27T22:34:17,844 adding 'smallgenomeutilities-0.4.1.data/scripts/frameshift_deletions_checks' 2024-05-27T22:34:17,846 adding 'smallgenomeutilities-0.4.1.data/scripts/gather_coverage' 2024-05-27T22:34:17,848 adding 'smallgenomeutilities-0.4.1.data/scripts/mapper' 2024-05-27T22:34:17,849 adding 'smallgenomeutilities-0.4.1.data/scripts/min_coverage' 2024-05-27T22:34:17,851 adding 'smallgenomeutilities-0.4.1.data/scripts/minority_freq' 2024-05-27T22:34:17,853 adding 'smallgenomeutilities-0.4.1.data/scripts/pair_sequences' 2024-05-27T22:34:17,855 adding 'smallgenomeutilities-0.4.1.data/scripts/predict_num_reads' 2024-05-27T22:34:17,857 adding 'smallgenomeutilities-0.4.1.data/scripts/prepare_primers' 2024-05-27T22:34:17,858 adding 'smallgenomeutilities-0.4.1.data/scripts/remove_gaps_msa' 2024-05-27T22:34:17,862 adding 'smallgenomeutilities-0.4.1.dist-info/LICENSE' 2024-05-27T22:34:17,867 adding 'smallgenomeutilities-0.4.1.dist-info/METADATA' 2024-05-27T22:34:17,868 adding 'smallgenomeutilities-0.4.1.dist-info/WHEEL' 2024-05-27T22:34:17,869 adding 'smallgenomeutilities-0.4.1.dist-info/top_level.txt' 2024-05-27T22:34:17,870 adding 'smallgenomeutilities-0.4.1.dist-info/RECORD' 2024-05-27T22:34:17,872 removing build/bdist.linux-armv7l/wheel 2024-05-27T22:34:18,008 Building wheel for smallgenomeutilities (pyproject.toml): finished with status 'done' 2024-05-27T22:34:18,014 Created wheel for smallgenomeutilities: filename=smallgenomeutilities-0.4.1-py3-none-any.whl size=78561 sha256=e7d4dc597fe6cd27c6c7f87050c24956bf83cc62b0f6177f2ef4f7f8fb1fc461 2024-05-27T22:34:18,015 Stored in directory: /tmp/pip-ephem-wheel-cache-pviprr01/wheels/2c/6c/16/28d98dbfd2481d7278b0d74cf08317c594f5bfc400e3d9f77c 2024-05-27T22:34:18,038 Successfully built smallgenomeutilities 2024-05-27T22:34:18,044 Removed build tracker: '/tmp/pip-build-tracker-zu5c0mbs'