2024-05-28T19:05:33,334 Created temporary directory: /tmp/pip-build-tracker-vk_h9b58 2024-05-28T19:05:33,335 Initialized build tracking at /tmp/pip-build-tracker-vk_h9b58 2024-05-28T19:05:33,335 Created build tracker: /tmp/pip-build-tracker-vk_h9b58 2024-05-28T19:05:33,336 Entered build tracker: /tmp/pip-build-tracker-vk_h9b58 2024-05-28T19:05:33,336 Created temporary directory: /tmp/pip-wheel-f0icqn52 2024-05-28T19:05:33,340 Created temporary directory: /tmp/pip-ephem-wheel-cache-dlqys6wa 2024-05-28T19:05:33,361 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2024-05-28T19:05:33,365 2 location(s) to search for versions of dscribe: 2024-05-28T19:05:33,365 * https://pypi.org/simple/dscribe/ 2024-05-28T19:05:33,365 * https://www.piwheels.org/simple/dscribe/ 2024-05-28T19:05:33,366 Fetching project page and analyzing links: https://pypi.org/simple/dscribe/ 2024-05-28T19:05:33,366 Getting page https://pypi.org/simple/dscribe/ 2024-05-28T19:05:33,368 Found index 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https://www.piwheels.org/simple/dscribe/dscribe-0.1.4-cp35-cp35m-linux_armv7l.whl#sha256=2735f707b8c5db49fa30f4f04519f961d3e4b4f624373e0ddefa7de7c86de8e1 (from https://www.piwheels.org/simple/dscribe/) (requires-python:>=2.6, <4) 2024-05-28T19:05:34,199 Skipping link: No binaries permitted for dscribe: https://www.piwheels.org/simple/dscribe/dscribe-0.1.4-cp35-cp35m-linux_armv6l.whl#sha256=2735f707b8c5db49fa30f4f04519f961d3e4b4f624373e0ddefa7de7c86de8e1 (from https://www.piwheels.org/simple/dscribe/) (requires-python:>=2.6, <4) 2024-05-28T19:05:34,199 Skipping link: not a file: https://www.piwheels.org/simple/dscribe/ 2024-05-28T19:05:34,200 Skipping link: not a file: https://pypi.org/simple/dscribe/ 2024-05-28T19:05:34,232 Given no hashes to check 1 links for project 'dscribe': discarding no candidates 2024-05-28T19:05:34,259 Collecting dscribe==2.1.1 2024-05-28T19:05:34,262 Created temporary directory: /tmp/pip-unpack-555rtyra 2024-05-28T19:05:34,488 Downloading dscribe-2.1.1.tar.gz (1.2 MB) 2024-05-28T19:05:35,730 Added dscribe==2.1.1 from https://files.pythonhosted.org/packages/b7/17/2e1725dedadd638768883b97db98c42e31febe56859dae2b5efc8ed93201/dscribe-2.1.1.tar.gz to build tracker '/tmp/pip-build-tracker-vk_h9b58' 2024-05-28T19:05:35,740 Created temporary directory: /tmp/pip-build-env-f4fc0ta9 2024-05-28T19:05:35,746 Installing build dependencies: started 2024-05-28T19:05:35,748 Running command pip subprocess to install build dependencies 2024-05-28T19:05:36,919 Using pip 24.0 from /usr/local/lib/python3.11/dist-packages/pip (python 3.11) 2024-05-28T19:05:37,396 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2024-05-28T19:05:38,944 Collecting setuptools>=42 2024-05-28T19:05:38,958 Using cached https://www.piwheels.org/simple/setuptools/setuptools-70.0.0-py3-none-any.whl (863 kB) 2024-05-28T19:05:39,183 Collecting wheel 2024-05-28T19:05:40,019 Using cached https://www.piwheels.org/simple/wheel/wheel-0.43.0-py3-none-any.whl (65 kB) 2024-05-28T19:05:40,245 Collecting pybind11>=2.4 2024-05-28T19:05:40,465 Using cached https://www.piwheels.org/simple/pybind11/pybind11-2.12.0-py3-none-any.whl (234 kB) 2024-05-28T19:05:43,072 Installing collected packages: wheel, setuptools, pybind11 2024-05-28T19:05:43,301 Creating /tmp/pip-build-env-f4fc0ta9/overlay/local/bin 2024-05-28T19:05:43,303 changing mode of /tmp/pip-build-env-f4fc0ta9/overlay/local/bin/wheel to 755 2024-05-28T19:05:45,810 changing mode of /tmp/pip-build-env-f4fc0ta9/overlay/local/bin/pybind11-config to 755 2024-05-28T19:05:45,832 Successfully installed pybind11-2.12.0 setuptools-70.0.0 wheel-0.43.0 2024-05-28T19:05:46,356 Installing build dependencies: finished with status 'done' 2024-05-28T19:05:46,359 Getting requirements to build wheel: started 2024-05-28T19:05:46,360 Running command Getting requirements to build wheel 2024-05-28T19:05:47,232 running egg_info 2024-05-28T19:05:47,236 writing dscribe.egg-info/PKG-INFO 2024-05-28T19:05:47,243 writing dependency_links to dscribe.egg-info/dependency_links.txt 2024-05-28T19:05:47,246 writing requirements to dscribe.egg-info/requires.txt 2024-05-28T19:05:47,248 writing top-level names to dscribe.egg-info/top_level.txt 2024-05-28T19:05:47,276 reading manifest file 'dscribe.egg-info/SOURCES.txt' 2024-05-28T19:05:47,287 reading manifest template 'MANIFEST.in' 2024-05-28T19:05:47,439 adding license file 'LICENSE' 2024-05-28T19:05:47,459 writing manifest file 'dscribe.egg-info/SOURCES.txt' 2024-05-28T19:05:47,581 Getting requirements to build wheel: finished with status 'done' 2024-05-28T19:05:47,592 Created temporary directory: /tmp/pip-modern-metadata-vmixpme9 2024-05-28T19:05:47,595 Preparing metadata (pyproject.toml): started 2024-05-28T19:05:47,596 Running command Preparing metadata (pyproject.toml) 2024-05-28T19:05:48,413 running dist_info 2024-05-28T19:05:48,418 creating /tmp/pip-modern-metadata-vmixpme9/dscribe.egg-info 2024-05-28T19:05:48,422 writing /tmp/pip-modern-metadata-vmixpme9/dscribe.egg-info/PKG-INFO 2024-05-28T19:05:48,429 writing dependency_links to /tmp/pip-modern-metadata-vmixpme9/dscribe.egg-info/dependency_links.txt 2024-05-28T19:05:48,432 writing requirements to /tmp/pip-modern-metadata-vmixpme9/dscribe.egg-info/requires.txt 2024-05-28T19:05:48,433 writing top-level names to /tmp/pip-modern-metadata-vmixpme9/dscribe.egg-info/top_level.txt 2024-05-28T19:05:48,435 writing manifest file '/tmp/pip-modern-metadata-vmixpme9/dscribe.egg-info/SOURCES.txt' 2024-05-28T19:05:48,457 reading manifest file '/tmp/pip-modern-metadata-vmixpme9/dscribe.egg-info/SOURCES.txt' 2024-05-28T19:05:48,459 reading manifest template 'MANIFEST.in' 2024-05-28T19:05:48,604 adding license file 'LICENSE' 2024-05-28T19:05:48,619 writing manifest file '/tmp/pip-modern-metadata-vmixpme9/dscribe.egg-info/SOURCES.txt' 2024-05-28T19:05:48,621 creating '/tmp/pip-modern-metadata-vmixpme9/dscribe-2.1.1.dist-info' 2024-05-28T19:05:48,779 Preparing metadata (pyproject.toml): finished with status 'done' 2024-05-28T19:05:48,785 Source in /tmp/pip-wheel-f0icqn52/dscribe_5f1224ecdd10494687346aeacc103bfe has version 2.1.1, which satisfies requirement dscribe==2.1.1 from https://files.pythonhosted.org/packages/b7/17/2e1725dedadd638768883b97db98c42e31febe56859dae2b5efc8ed93201/dscribe-2.1.1.tar.gz 2024-05-28T19:05:48,786 Removed dscribe==2.1.1 from https://files.pythonhosted.org/packages/b7/17/2e1725dedadd638768883b97db98c42e31febe56859dae2b5efc8ed93201/dscribe-2.1.1.tar.gz from build tracker '/tmp/pip-build-tracker-vk_h9b58' 2024-05-28T19:05:48,796 Created temporary directory: /tmp/pip-unpack-1wx_uvvh 2024-05-28T19:05:48,798 Created temporary directory: /tmp/pip-unpack-m3veb5cx 2024-05-28T19:05:48,831 Building wheels for collected packages: dscribe 2024-05-28T19:05:48,835 Created temporary directory: /tmp/pip-wheel-o2ei03ya 2024-05-28T19:05:48,836 Destination directory: /tmp/pip-wheel-o2ei03ya 2024-05-28T19:05:48,839 Building wheel for dscribe (pyproject.toml): started 2024-05-28T19:05:48,840 Running command Building wheel for dscribe (pyproject.toml) 2024-05-28T19:05:49,609 running bdist_wheel 2024-05-28T19:05:49,627 running build 2024-05-28T19:05:49,628 running build_py 2024-05-28T19:05:49,632 creating build 2024-05-28T19:05:49,633 creating build/lib.linux-armv7l-cpython-311 2024-05-28T19:05:49,634 creating build/lib.linux-armv7l-cpython-311/dscribe 2024-05-28T19:05:49,635 copying dscribe/__init__.py -> build/lib.linux-armv7l-cpython-311/dscribe 2024-05-28T19:05:49,637 creating build/lib.linux-armv7l-cpython-311/dscribe/kernels 2024-05-28T19:05:49,638 copying dscribe/kernels/averagekernel.py -> build/lib.linux-armv7l-cpython-311/dscribe/kernels 2024-05-28T19:05:49,640 copying dscribe/kernels/localsimilaritykernel.py -> build/lib.linux-armv7l-cpython-311/dscribe/kernels 2024-05-28T19:05:49,642 copying dscribe/kernels/__init__.py -> build/lib.linux-armv7l-cpython-311/dscribe/kernels 2024-05-28T19:05:49,644 copying dscribe/kernels/rematchkernel.py -> build/lib.linux-armv7l-cpython-311/dscribe/kernels 2024-05-28T19:05:49,646 creating build/lib.linux-armv7l-cpython-311/dscribe/descriptors 2024-05-28T19:05:49,647 copying dscribe/descriptors/descriptormatrix.py -> build/lib.linux-armv7l-cpython-311/dscribe/descriptors 2024-05-28T19:05:49,649 copying dscribe/descriptors/descriptorglobal.py -> build/lib.linux-armv7l-cpython-311/dscribe/descriptors 2024-05-28T19:05:49,652 copying dscribe/descriptors/sinematrix.py -> build/lib.linux-armv7l-cpython-311/dscribe/descriptors 2024-05-28T19:05:49,653 copying dscribe/descriptors/mbtr.py -> build/lib.linux-armv7l-cpython-311/dscribe/descriptors 2024-05-28T19:05:49,656 copying dscribe/descriptors/descriptorlocal.py -> build/lib.linux-armv7l-cpython-311/dscribe/descriptors 2024-05-28T19:05:49,659 copying dscribe/descriptors/__init__.py -> build/lib.linux-armv7l-cpython-311/dscribe/descriptors 2024-05-28T19:05:49,660 copying dscribe/descriptors/valleoganov.py -> build/lib.linux-armv7l-cpython-311/dscribe/descriptors 2024-05-28T19:05:49,662 copying dscribe/descriptors/acsf.py -> build/lib.linux-armv7l-cpython-311/dscribe/descriptors 2024-05-28T19:05:49,664 copying dscribe/descriptors/descriptor.py -> build/lib.linux-armv7l-cpython-311/dscribe/descriptors 2024-05-28T19:05:49,667 copying dscribe/descriptors/ewaldsummatrix.py -> build/lib.linux-armv7l-cpython-311/dscribe/descriptors 2024-05-28T19:05:49,669 copying dscribe/descriptors/soap.py -> build/lib.linux-armv7l-cpython-311/dscribe/descriptors 2024-05-28T19:05:49,672 copying dscribe/descriptors/lmbtr.py -> build/lib.linux-armv7l-cpython-311/dscribe/descriptors 2024-05-28T19:05:49,675 copying dscribe/descriptors/coulombmatrix.py -> build/lib.linux-armv7l-cpython-311/dscribe/descriptors 2024-05-28T19:05:49,677 creating build/lib.linux-armv7l-cpython-311/dscribe/core 2024-05-28T19:05:49,678 copying dscribe/core/lattice.py -> build/lib.linux-armv7l-cpython-311/dscribe/core 2024-05-28T19:05:49,680 copying dscribe/core/__init__.py -> build/lib.linux-armv7l-cpython-311/dscribe/core 2024-05-28T19:05:49,682 copying dscribe/core/system.py -> build/lib.linux-armv7l-cpython-311/dscribe/core 2024-05-28T19:05:49,685 creating build/lib.linux-armv7l-cpython-311/dscribe/utils 2024-05-28T19:05:49,686 copying dscribe/utils/stats.py -> build/lib.linux-armv7l-cpython-311/dscribe/utils 2024-05-28T19:05:49,688 copying dscribe/utils/dimensionality.py -> build/lib.linux-armv7l-cpython-311/dscribe/utils 2024-05-28T19:05:49,689 copying dscribe/utils/__init__.py -> build/lib.linux-armv7l-cpython-311/dscribe/utils 2024-05-28T19:05:49,691 copying dscribe/utils/species.py -> build/lib.linux-armv7l-cpython-311/dscribe/utils 2024-05-28T19:05:49,693 copying dscribe/utils/geometry.py -> build/lib.linux-armv7l-cpython-311/dscribe/utils 2024-05-28T19:05:49,695 running egg_info 2024-05-28T19:05:49,698 writing dscribe.egg-info/PKG-INFO 2024-05-28T19:05:49,705 writing dependency_links to dscribe.egg-info/dependency_links.txt 2024-05-28T19:05:49,707 writing requirements to dscribe.egg-info/requires.txt 2024-05-28T19:05:49,708 writing top-level names to dscribe.egg-info/top_level.txt 2024-05-28T19:05:49,721 reading manifest file 'dscribe.egg-info/SOURCES.txt' 2024-05-28T19:05:49,732 reading manifest template 'MANIFEST.in' 2024-05-28T19:05:49,877 adding license file 'LICENSE' 2024-05-28T19:05:49,897 writing manifest file 'dscribe.egg-info/SOURCES.txt' 2024-05-28T19:05:49,920 creating build/lib.linux-armv7l-cpython-311/dscribe/ext 2024-05-28T19:05:49,921 copying dscribe/ext/acsf.cpp -> build/lib.linux-armv7l-cpython-311/dscribe/ext 2024-05-28T19:05:49,923 copying dscribe/ext/acsf.h -> build/lib.linux-armv7l-cpython-311/dscribe/ext 2024-05-28T19:05:49,926 copying dscribe/ext/celllist.cpp -> build/lib.linux-armv7l-cpython-311/dscribe/ext 2024-05-28T19:05:49,928 copying dscribe/ext/celllist.h -> build/lib.linux-armv7l-cpython-311/dscribe/ext 2024-05-28T19:05:49,930 copying dscribe/ext/coulombmatrix.cpp -> build/lib.linux-armv7l-cpython-311/dscribe/ext 2024-05-28T19:05:49,932 copying dscribe/ext/coulombmatrix.h -> build/lib.linux-armv7l-cpython-311/dscribe/ext 2024-05-28T19:05:49,934 copying dscribe/ext/descriptor.cpp -> build/lib.linux-armv7l-cpython-311/dscribe/ext 2024-05-28T19:05:49,936 copying dscribe/ext/descriptor.h -> build/lib.linux-armv7l-cpython-311/dscribe/ext 2024-05-28T19:05:49,938 copying dscribe/ext/descriptorglobal.cpp -> build/lib.linux-armv7l-cpython-311/dscribe/ext 2024-05-28T19:05:49,941 copying dscribe/ext/descriptorglobal.h -> build/lib.linux-armv7l-cpython-311/dscribe/ext 2024-05-28T19:05:49,943 copying dscribe/ext/descriptorlocal.cpp -> build/lib.linux-armv7l-cpython-311/dscribe/ext 2024-05-28T19:05:49,946 copying dscribe/ext/descriptorlocal.h -> build/lib.linux-armv7l-cpython-311/dscribe/ext 2024-05-28T19:05:49,948 copying dscribe/ext/ext.cpp -> build/lib.linux-armv7l-cpython-311/dscribe/ext 2024-05-28T19:05:49,950 copying dscribe/ext/geometry.cpp -> build/lib.linux-armv7l-cpython-311/dscribe/ext 2024-05-28T19:05:49,952 copying dscribe/ext/geometry.h -> build/lib.linux-armv7l-cpython-311/dscribe/ext 2024-05-28T19:05:49,954 copying dscribe/ext/mbtr.cpp -> build/lib.linux-armv7l-cpython-311/dscribe/ext 2024-05-28T19:05:49,957 copying dscribe/ext/mbtr.h -> build/lib.linux-armv7l-cpython-311/dscribe/ext 2024-05-28T19:05:49,960 copying dscribe/ext/soap.cpp -> build/lib.linux-armv7l-cpython-311/dscribe/ext 2024-05-28T19:05:49,962 copying dscribe/ext/soap.h -> build/lib.linux-armv7l-cpython-311/dscribe/ext 2024-05-28T19:05:49,964 copying dscribe/ext/soapGTO.cpp -> build/lib.linux-armv7l-cpython-311/dscribe/ext 2024-05-28T19:05:49,972 copying dscribe/ext/soapGTO.h -> build/lib.linux-armv7l-cpython-311/dscribe/ext 2024-05-28T19:05:49,974 copying dscribe/ext/soapGeneral.cpp -> build/lib.linux-armv7l-cpython-311/dscribe/ext 2024-05-28T19:05:49,978 copying dscribe/ext/soapGeneral.h -> build/lib.linux-armv7l-cpython-311/dscribe/ext 2024-05-28T19:05:49,980 copying dscribe/ext/weighting.cpp -> build/lib.linux-armv7l-cpython-311/dscribe/ext 2024-05-28T19:05:49,982 copying dscribe/ext/weighting.h -> build/lib.linux-armv7l-cpython-311/dscribe/ext 2024-05-28T19:05:49,987 running build_ext 2024-05-28T19:05:49,995 building 'dscribe.ext' extension 2024-05-28T19:05:49,999 creating build/temp.linux-armv7l-cpython-311 2024-05-28T19:05:50,000 creating build/temp.linux-armv7l-cpython-311/dscribe 2024-05-28T19:05:50,001 creating build/temp.linux-armv7l-cpython-311/dscribe/ext 2024-05-28T19:05:50,002 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Idependencies/eigen -Idscribe/ext -I/tmp/pip-build-env-f4fc0ta9/overlay/local/lib/python3.11/dist-packages/pybind11/include -I/tmp/pip-build-env-f4fc0ta9/overlay/local/lib/python3.11/dist-packages/pybind11/include -I/usr/include/python3.11 -c dscribe/ext/acsf.cpp -o build/temp.linux-armv7l-cpython-311/dscribe/ext/acsf.o -std=c++11 -O3 "-I dependencies/eigen/Eigen/" -fvisibility=hidden 2024-05-28T19:06:04,347 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Idependencies/eigen -Idscribe/ext -I/tmp/pip-build-env-f4fc0ta9/overlay/local/lib/python3.11/dist-packages/pybind11/include -I/tmp/pip-build-env-f4fc0ta9/overlay/local/lib/python3.11/dist-packages/pybind11/include -I/usr/include/python3.11 -c dscribe/ext/celllist.cpp -o build/temp.linux-armv7l-cpython-311/dscribe/ext/celllist.o -std=c++11 -O3 "-I dependencies/eigen/Eigen/" -fvisibility=hidden 2024-05-28T19:06:09,642 dscribe/ext/celllist.cpp: In member function ‘CellListResult CellList::getNeighboursForIndex(int) const’: 2024-05-28T19:06:09,642 dscribe/ext/celllist.cpp:155:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2024-05-28T19:06:09,643 155 | for (int i=0; i < result.indices.size(); ++i) { 2024-05-28T19:06:09,643 | ~~^~~~~~~~~~~~~~~~~~~~~~~ 2024-05-28T19:06:15,111 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Idependencies/eigen -Idscribe/ext -I/tmp/pip-build-env-f4fc0ta9/overlay/local/lib/python3.11/dist-packages/pybind11/include -I/tmp/pip-build-env-f4fc0ta9/overlay/local/lib/python3.11/dist-packages/pybind11/include -I/usr/include/python3.11 -c dscribe/ext/coulombmatrix.cpp -o build/temp.linux-armv7l-cpython-311/dscribe/ext/coulombmatrix.o -std=c++11 -O3 "-I dependencies/eigen/Eigen/" -fvisibility=hidden 2024-05-28T19:07:01,198 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Idependencies/eigen -Idscribe/ext -I/tmp/pip-build-env-f4fc0ta9/overlay/local/lib/python3.11/dist-packages/pybind11/include -I/tmp/pip-build-env-f4fc0ta9/overlay/local/lib/python3.11/dist-packages/pybind11/include -I/usr/include/python3.11 -c dscribe/ext/descriptor.cpp -o build/temp.linux-armv7l-cpython-311/dscribe/ext/descriptor.o -std=c++11 -O3 "-I dependencies/eigen/Eigen/" -fvisibility=hidden 2024-05-28T19:07:12,074 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Idependencies/eigen -Idscribe/ext -I/tmp/pip-build-env-f4fc0ta9/overlay/local/lib/python3.11/dist-packages/pybind11/include -I/tmp/pip-build-env-f4fc0ta9/overlay/local/lib/python3.11/dist-packages/pybind11/include -I/usr/include/python3.11 -c dscribe/ext/descriptorglobal.cpp -o build/temp.linux-armv7l-cpython-311/dscribe/ext/descriptorglobal.o -std=c++11 -O3 "-I dependencies/eigen/Eigen/" -fvisibility=hidden 2024-05-28T19:07:47,318 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Idependencies/eigen -Idscribe/ext -I/tmp/pip-build-env-f4fc0ta9/overlay/local/lib/python3.11/dist-packages/pybind11/include -I/tmp/pip-build-env-f4fc0ta9/overlay/local/lib/python3.11/dist-packages/pybind11/include -I/usr/include/python3.11 -c dscribe/ext/descriptorlocal.cpp -o build/temp.linux-armv7l-cpython-311/dscribe/ext/descriptorlocal.o -std=c++11 -O3 "-I dependencies/eigen/Eigen/" -fvisibility=hidden 2024-05-28T19:08:21,331 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Idependencies/eigen -Idscribe/ext -I/tmp/pip-build-env-f4fc0ta9/overlay/local/lib/python3.11/dist-packages/pybind11/include -I/tmp/pip-build-env-f4fc0ta9/overlay/local/lib/python3.11/dist-packages/pybind11/include -I/usr/include/python3.11 -c dscribe/ext/ext.cpp -o build/temp.linux-armv7l-cpython-311/dscribe/ext/ext.o -std=c++11 -O3 "-I dependencies/eigen/Eigen/" -fvisibility=hidden 2024-05-28T19:09:29,213 In file included from /usr/include/c++/12/vector:70, 2024-05-28T19:09:29,214 from /tmp/pip-build-env-f4fc0ta9/overlay/local/lib/python3.11/dist-packages/pybind11/include/pybind11/detail/../detail/common.h:326, 2024-05-28T19:09:29,215 from /tmp/pip-build-env-f4fc0ta9/overlay/local/lib/python3.11/dist-packages/pybind11/include/pybind11/detail/../attr.h:13, 2024-05-28T19:09:29,215 from /tmp/pip-build-env-f4fc0ta9/overlay/local/lib/python3.11/dist-packages/pybind11/include/pybind11/detail/class.h:12, 2024-05-28T19:09:29,216 from /tmp/pip-build-env-f4fc0ta9/overlay/local/lib/python3.11/dist-packages/pybind11/include/pybind11/pybind11.h:13, 2024-05-28T19:09:29,216 from dscribe/ext/ext.cpp:16: 2024-05-28T19:09:29,217 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’: 2024-05-28T19:09:29,217 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2024-05-28T19:09:29,218 439 | vector<_Tp, _Alloc>:: 2024-05-28T19:09:29,218 | ^~~~~~~~~~~~~~~~~~~ 2024-05-28T19:09:29,281 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, 2024-05-28T19:09:29,282 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2024-05-28T19:09:29,282 inlined from ‘bool pybind11::detail::list_caster::load(pybind11::handle, bool) [with Type = std::vector; Value = double]’ at /tmp/pip-build-env-f4fc0ta9/overlay/local/lib/python3.11/dist-packages/pybind11/include/pybind11/stl.h:180:28: 2024-05-28T19:09:29,283 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2024-05-28T19:09:29,284 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2024-05-28T19:09:29,285 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-05-28T19:09:40,217 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Idependencies/eigen -Idscribe/ext -I/tmp/pip-build-env-f4fc0ta9/overlay/local/lib/python3.11/dist-packages/pybind11/include -I/tmp/pip-build-env-f4fc0ta9/overlay/local/lib/python3.11/dist-packages/pybind11/include -I/usr/include/python3.11 -c dscribe/ext/geometry.cpp -o build/temp.linux-armv7l-cpython-311/dscribe/ext/geometry.o -std=c++11 -O3 "-I dependencies/eigen/Eigen/" -fvisibility=hidden 2024-05-28T19:10:11,696 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Idependencies/eigen -Idscribe/ext -I/tmp/pip-build-env-f4fc0ta9/overlay/local/lib/python3.11/dist-packages/pybind11/include -I/tmp/pip-build-env-f4fc0ta9/overlay/local/lib/python3.11/dist-packages/pybind11/include -I/usr/include/python3.11 -c dscribe/ext/mbtr.cpp -o build/temp.linux-armv7l-cpython-311/dscribe/ext/mbtr.o -std=c++11 -O3 "-I dependencies/eigen/Eigen/" -fvisibility=hidden 2024-05-28T19:10:16,906 dscribe/ext/mbtr.cpp: In member function ‘void MBTR::getK1(pybind11::array_t&, const std::vector&, const std::string&, const std::string&, const std::map, double>&, double, double, double, int)’: 2024-05-28T19:10:16,907 dscribe/ext/mbtr.cpp:51:13: warning: unused variable ‘end’ [-Wunused-variable] 2024-05-28T19:10:16,908 51 | int end = (i_index + 1) * n; 2024-05-28T19:10:16,909 | ^~~ 2024-05-28T19:10:16,952 dscribe/ext/mbtr.cpp: In member function ‘void MBTR::getK2(pybind11::array_t&, pybind11::array_t&, bool, bool, const std::vector&, const std::vector >&, const std::vector >&, const std::vector >&, const std::string&, const std::string&, const std::map, double>&, double, double, double, int)’: 2024-05-28T19:10:16,953 dscribe/ext/mbtr.cpp:180:17: warning: unused variable ‘end’ [-Wunused-variable] 2024-05-28T19:10:16,954 180 | int end = (m + 1) * n; 2024-05-28T19:10:16,954 | ^~~ 2024-05-28T19:10:16,977 dscribe/ext/mbtr.cpp: In member function ‘void MBTR::getK3(pybind11::array_t&, pybind11::array_t&, bool, bool, const std::vector&, const std::vector >&, const std::vector >&, const std::vector >&, const std::string&, const std::string&, const std::map, double>&, double, double, double, int)’: 2024-05-28T19:10:16,978 dscribe/ext/mbtr.cpp:402:21: warning: unused variable ‘end’ [-Wunused-variable] 2024-05-28T19:10:16,978 402 | int end = (m + 1) * n; 2024-05-28T19:10:16,979 | ^~~ 2024-05-28T19:10:24,173 In file included from /usr/include/c++/12/vector:70, 2024-05-28T19:10:24,174 from dscribe/ext/mbtr.h:4, 2024-05-28T19:10:24,175 from dscribe/ext/mbtr.cpp:1: 2024-05-28T19:10:24,175 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’: 2024-05-28T19:10:24,176 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2024-05-28T19:10:24,176 439 | vector<_Tp, _Alloc>:: 2024-05-28T19:10:24,177 | ^~~~~~~~~~~~~~~~~~~ 2024-05-28T19:10:25,192 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, 2024-05-28T19:10:25,193 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2024-05-28T19:10:25,194 inlined from ‘void MBTR::getK3(pybind11::array_t&, pybind11::array_t&, bool, bool, const std::vector&, const std::vector >&, const std::vector >&, const std::vector >&, const std::string&, const std::string&, const std::map, double>&, double, double, double, int)’ at dscribe/ext/mbtr.cpp:289:48: 2024-05-28T19:10:25,195 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2024-05-28T19:10:25,196 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2024-05-28T19:10:25,196 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-05-28T19:10:25,197 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, 2024-05-28T19:10:25,198 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2024-05-28T19:10:25,198 inlined from ‘void MBTR::getK3(pybind11::array_t&, pybind11::array_t&, bool, bool, const std::vector&, const std::vector >&, const std::vector >&, const std::vector >&, const std::string&, const std::string&, const std::map, double>&, double, double, double, int)’ at dscribe/ext/mbtr.cpp:290:48: 2024-05-28T19:10:25,199 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2024-05-28T19:10:25,200 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2024-05-28T19:10:25,201 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-05-28T19:10:25,201 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, 2024-05-28T19:10:25,202 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2024-05-28T19:10:25,202 inlined from ‘void MBTR::getK3(pybind11::array_t&, pybind11::array_t&, bool, bool, const std::vector&, const std::vector >&, const std::vector >&, const std::vector >&, const std::string&, const std::string&, const std::map, double>&, double, double, double, int)’ at dscribe/ext/mbtr.cpp:291:48: 2024-05-28T19:10:25,203 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2024-05-28T19:10:25,203 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2024-05-28T19:10:25,204 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-05-28T19:10:25,205 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, 2024-05-28T19:10:25,205 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2024-05-28T19:10:25,206 inlined from ‘void MBTR::getK3(pybind11::array_t&, pybind11::array_t&, bool, bool, const std::vector&, const std::vector >&, const std::vector >&, const std::vector >&, const std::string&, const std::string&, const std::map, double>&, double, double, double, int)’ at dscribe/ext/mbtr.cpp:289:48: 2024-05-28T19:10:25,207 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2024-05-28T19:10:25,208 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2024-05-28T19:10:25,209 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-05-28T19:10:25,209 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, 2024-05-28T19:10:25,210 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2024-05-28T19:10:25,211 inlined from ‘void MBTR::getK3(pybind11::array_t&, pybind11::array_t&, bool, bool, const std::vector&, const std::vector >&, const std::vector >&, const std::vector >&, const std::string&, const std::string&, const std::map, double>&, double, double, double, int)’ at dscribe/ext/mbtr.cpp:290:48: 2024-05-28T19:10:25,211 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2024-05-28T19:10:25,212 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2024-05-28T19:10:25,213 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-05-28T19:10:25,214 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, 2024-05-28T19:10:25,214 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2024-05-28T19:10:25,215 inlined from ‘void MBTR::getK3(pybind11::array_t&, pybind11::array_t&, bool, bool, const std::vector&, const std::vector >&, const std::vector >&, const std::vector >&, const std::string&, const std::string&, const std::map, double>&, double, double, double, int)’ at dscribe/ext/mbtr.cpp:291:48: 2024-05-28T19:10:25,216 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2024-05-28T19:10:25,216 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2024-05-28T19:10:25,217 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-05-28T19:10:25,217 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, 2024-05-28T19:10:25,218 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2024-05-28T19:10:25,218 inlined from ‘void MBTR::getK3(pybind11::array_t&, pybind11::array_t&, bool, bool, const std::vector&, const std::vector >&, const std::vector >&, const std::vector >&, const std::string&, const std::string&, const std::map, double>&, double, double, double, int)’ at dscribe/ext/mbtr.cpp:289:48: 2024-05-28T19:10:25,219 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2024-05-28T19:10:25,219 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2024-05-28T19:10:25,220 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-05-28T19:10:25,221 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, 2024-05-28T19:10:25,222 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2024-05-28T19:10:25,222 inlined from ‘void MBTR::getK3(pybind11::array_t&, pybind11::array_t&, bool, bool, const std::vector&, const std::vector >&, const std::vector >&, const std::vector >&, const std::string&, const std::string&, const std::map, double>&, double, double, double, int)’ at dscribe/ext/mbtr.cpp:290:48: 2024-05-28T19:10:25,223 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2024-05-28T19:10:25,224 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2024-05-28T19:10:25,225 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-05-28T19:10:25,226 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, 2024-05-28T19:10:25,227 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2024-05-28T19:10:25,228 inlined from ‘void MBTR::getK3(pybind11::array_t&, pybind11::array_t&, bool, bool, const std::vector&, const std::vector >&, const std::vector >&, const std::vector >&, const std::string&, const std::string&, const std::map, double>&, double, double, double, int)’ at dscribe/ext/mbtr.cpp:291:48: 2024-05-28T19:10:25,229 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2024-05-28T19:10:25,229 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2024-05-28T19:10:25,230 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-05-28T19:10:25,231 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, 2024-05-28T19:10:25,232 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2024-05-28T19:10:25,232 inlined from ‘void MBTR::getK3(pybind11::array_t&, pybind11::array_t&, bool, bool, const std::vector&, const std::vector >&, const std::vector >&, const std::vector >&, const std::string&, const std::string&, const std::map, double>&, double, double, double, int)’ at dscribe/ext/mbtr.cpp:315:50: 2024-05-28T19:10:25,233 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2024-05-28T19:10:25,233 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2024-05-28T19:10:25,235 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-05-28T19:10:25,236 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, 2024-05-28T19:10:25,236 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2024-05-28T19:10:25,237 inlined from ‘void MBTR::getK3(pybind11::array_t&, pybind11::array_t&, bool, bool, const std::vector&, const std::vector >&, const std::vector >&, const std::vector >&, const std::string&, const std::string&, const std::map, double>&, double, double, double, int)’ at dscribe/ext/mbtr.cpp:316:50: 2024-05-28T19:10:25,238 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2024-05-28T19:10:25,239 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2024-05-28T19:10:25,240 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-05-28T19:10:25,240 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, 2024-05-28T19:10:25,241 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2024-05-28T19:10:25,242 inlined from ‘void MBTR::getK3(pybind11::array_t&, pybind11::array_t&, bool, bool, const std::vector&, const std::vector >&, const std::vector >&, const std::vector >&, const std::string&, const std::string&, const std::map, double>&, double, double, double, int)’ at dscribe/ext/mbtr.cpp:317:50: 2024-05-28T19:10:25,243 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2024-05-28T19:10:25,244 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2024-05-28T19:10:25,244 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-05-28T19:10:25,245 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, 2024-05-28T19:10:25,245 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2024-05-28T19:10:25,246 inlined from ‘void MBTR::getK3(pybind11::array_t&, pybind11::array_t&, bool, bool, const std::vector&, const std::vector >&, const std::vector >&, const std::vector >&, const std::string&, const std::string&, const std::map, double>&, double, double, double, int)’ at dscribe/ext/mbtr.cpp:315:50: 2024-05-28T19:10:25,246 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2024-05-28T19:10:25,247 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2024-05-28T19:10:25,248 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-05-28T19:10:25,248 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, 2024-05-28T19:10:25,249 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2024-05-28T19:10:25,250 inlined from ‘void MBTR::getK3(pybind11::array_t&, pybind11::array_t&, bool, bool, const std::vector&, const std::vector >&, const std::vector >&, const std::vector >&, const std::string&, const std::string&, const std::map, double>&, double, double, double, int)’ at dscribe/ext/mbtr.cpp:316:50: 2024-05-28T19:10:25,251 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2024-05-28T19:10:25,251 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2024-05-28T19:10:25,252 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-05-28T19:10:25,253 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, 2024-05-28T19:10:25,253 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2024-05-28T19:10:25,254 inlined from ‘void MBTR::getK3(pybind11::array_t&, pybind11::array_t&, bool, bool, const std::vector&, const std::vector >&, const std::vector >&, const std::vector >&, const std::string&, const std::string&, const std::map, double>&, double, double, double, int)’ at dscribe/ext/mbtr.cpp:317:50: 2024-05-28T19:10:25,255 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2024-05-28T19:10:25,255 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2024-05-28T19:10:25,256 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-05-28T19:10:25,257 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, 2024-05-28T19:10:25,257 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2024-05-28T19:10:25,258 inlined from ‘void MBTR::getK3(pybind11::array_t&, pybind11::array_t&, bool, bool, const std::vector&, const std::vector >&, const std::vector >&, const std::vector >&, const std::string&, const std::string&, const std::map, double>&, double, double, double, int)’ at dscribe/ext/mbtr.cpp:315:50: 2024-05-28T19:10:25,258 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2024-05-28T19:10:25,259 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2024-05-28T19:10:25,259 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-05-28T19:10:25,260 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, 2024-05-28T19:10:25,260 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2024-05-28T19:10:25,261 inlined from ‘void MBTR::getK3(pybind11::array_t&, pybind11::array_t&, bool, bool, const std::vector&, const std::vector >&, const std::vector >&, const std::vector >&, const std::string&, const std::string&, const std::map, double>&, double, double, double, int)’ at dscribe/ext/mbtr.cpp:316:50: 2024-05-28T19:10:25,261 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2024-05-28T19:10:25,262 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2024-05-28T19:10:25,263 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-05-28T19:10:25,264 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, 2024-05-28T19:10:25,265 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2024-05-28T19:10:25,265 inlined from ‘void MBTR::getK3(pybind11::array_t&, pybind11::array_t&, bool, bool, const std::vector&, const std::vector >&, const std::vector >&, const std::vector >&, const std::string&, const std::string&, const std::map, double>&, double, double, double, int)’ at dscribe/ext/mbtr.cpp:317:50: 2024-05-28T19:10:25,266 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2024-05-28T19:10:25,267 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2024-05-28T19:10:25,267 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-05-28T19:10:25,268 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, 2024-05-28T19:10:25,269 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2024-05-28T19:10:25,270 inlined from ‘void MBTR::getK3(pybind11::array_t&, pybind11::array_t&, bool, bool, const std::vector&, const std::vector >&, const std::vector >&, const std::vector >&, const std::string&, const std::string&, const std::map, double>&, double, double, double, int)’ at dscribe/ext/mbtr.cpp:347:46: 2024-05-28T19:10:25,271 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2024-05-28T19:10:25,271 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2024-05-28T19:10:25,272 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-05-28T19:10:25,272 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, 2024-05-28T19:10:25,273 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2024-05-28T19:10:25,273 inlined from ‘void MBTR::getK3(pybind11::array_t&, pybind11::array_t&, bool, bool, const std::vector&, const std::vector >&, const std::vector >&, const std::vector >&, const std::string&, const std::string&, const std::map, double>&, double, double, double, int)’ at dscribe/ext/mbtr.cpp:348:46: 2024-05-28T19:10:25,274 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2024-05-28T19:10:25,275 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2024-05-28T19:10:25,276 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-05-28T19:10:25,276 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, 2024-05-28T19:10:25,277 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2024-05-28T19:10:25,278 inlined from ‘void MBTR::getK3(pybind11::array_t&, pybind11::array_t&, bool, bool, const std::vector&, const std::vector >&, const std::vector >&, const std::vector >&, const std::string&, const std::string&, const std::map, double>&, double, double, double, int)’ at dscribe/ext/mbtr.cpp:349:46: 2024-05-28T19:10:25,279 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2024-05-28T19:10:25,280 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2024-05-28T19:10:25,280 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-05-28T19:10:25,281 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, 2024-05-28T19:10:25,281 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2024-05-28T19:10:25,282 inlined from ‘void MBTR::getK3(pybind11::array_t&, pybind11::array_t&, bool, bool, const std::vector&, const std::vector >&, const std::vector >&, const std::vector >&, const std::string&, const std::string&, const std::map, double>&, double, double, double, int)’ at dscribe/ext/mbtr.cpp:347:46: 2024-05-28T19:10:25,283 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2024-05-28T19:10:25,284 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2024-05-28T19:10:25,285 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-05-28T19:10:25,285 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, 2024-05-28T19:10:25,286 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2024-05-28T19:10:25,286 inlined from ‘void MBTR::getK3(pybind11::array_t&, pybind11::array_t&, bool, bool, const std::vector&, const std::vector >&, const std::vector >&, const std::vector >&, const std::string&, const std::string&, const std::map, double>&, double, double, double, int)’ at dscribe/ext/mbtr.cpp:348:46: 2024-05-28T19:10:25,287 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2024-05-28T19:10:25,288 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2024-05-28T19:10:25,288 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-05-28T19:10:25,289 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, 2024-05-28T19:10:25,289 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2024-05-28T19:10:25,290 inlined from ‘void MBTR::getK3(pybind11::array_t&, pybind11::array_t&, bool, bool, const std::vector&, const std::vector >&, const std::vector >&, const std::vector >&, const std::string&, const std::string&, const std::map, double>&, double, double, double, int)’ at dscribe/ext/mbtr.cpp:349:46: 2024-05-28T19:10:25,291 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2024-05-28T19:10:25,292 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2024-05-28T19:10:25,292 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-05-28T19:10:25,293 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, 2024-05-28T19:10:25,293 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2024-05-28T19:10:25,294 inlined from ‘void MBTR::getK3(pybind11::array_t&, pybind11::array_t&, bool, bool, const std::vector&, const std::vector >&, const std::vector >&, const std::vector >&, const std::string&, const std::string&, const std::map, double>&, double, double, double, int)’ at dscribe/ext/mbtr.cpp:347:46: 2024-05-28T19:10:25,295 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2024-05-28T19:10:25,295 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2024-05-28T19:10:25,296 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-05-28T19:10:25,297 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, 2024-05-28T19:10:25,297 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2024-05-28T19:10:25,298 inlined from ‘void MBTR::getK3(pybind11::array_t&, pybind11::array_t&, bool, bool, const std::vector&, const std::vector >&, const std::vector >&, const std::vector >&, const std::string&, const std::string&, const std::map, double>&, double, double, double, int)’ at dscribe/ext/mbtr.cpp:348:46: 2024-05-28T19:10:25,298 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2024-05-28T19:10:25,299 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2024-05-28T19:10:25,299 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-05-28T19:10:25,300 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, 2024-05-28T19:10:25,300 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2024-05-28T19:10:25,301 inlined from ‘void MBTR::getK3(pybind11::array_t&, pybind11::array_t&, bool, bool, const std::vector&, const std::vector >&, const std::vector >&, const std::vector >&, const std::string&, const std::string&, const std::map, double>&, double, double, double, int)’ at dscribe/ext/mbtr.cpp:349:46: 2024-05-28T19:10:25,301 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2024-05-28T19:10:25,302 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2024-05-28T19:10:25,303 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-05-28T19:10:31,232 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Idependencies/eigen -Idscribe/ext -I/tmp/pip-build-env-f4fc0ta9/overlay/local/lib/python3.11/dist-packages/pybind11/include -I/tmp/pip-build-env-f4fc0ta9/overlay/local/lib/python3.11/dist-packages/pybind11/include -I/usr/include/python3.11 -c dscribe/ext/soap.cpp -o build/temp.linux-armv7l-cpython-311/dscribe/ext/soap.o -std=c++11 -O3 "-I dependencies/eigen/Eigen/" -fvisibility=hidden 2024-05-28T19:11:02,191 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Idependencies/eigen -Idscribe/ext -I/tmp/pip-build-env-f4fc0ta9/overlay/local/lib/python3.11/dist-packages/pybind11/include -I/tmp/pip-build-env-f4fc0ta9/overlay/local/lib/python3.11/dist-packages/pybind11/include -I/usr/include/python3.11 -c dscribe/ext/soapGTO.cpp -o build/temp.linux-armv7l-cpython-311/dscribe/ext/soapGTO.o -std=c++11 -O3 "-I dependencies/eigen/Eigen/" -fvisibility=hidden 2024-05-28T19:13:48,809 dscribe/ext/soapGTO.cpp: In function ‘void soapGTO(pybind11::array_t, pybind11::array_t, pybind11::array_t, pybind11::array_t, pybind11::array_t, pybind11::array_t, pybind11::array_t, pybind11::array_t, pybind11::array_t, pybind11::array_t, pybind11::array_t, pybind11::array_t, pybind11::array_t, double, double, int, int, double, pybind11::dict, std::string, std::string, pybind11::array_t, bool, bool, bool, CellList)’: 2024-05-28T19:13:48,810 dscribe/ext/soapGTO.cpp:2738:23: warning: ‘cnnd_compressed_raw’ may be used uninitialized [-Wmaybe-uninitialized] 2024-05-28T19:13:48,811 2738 | delete [] cnnd_compressed_raw; 2024-05-28T19:13:48,811 | ^~~~~~~~~~~~~~~~~~~ 2024-05-28T19:13:48,812 dscribe/ext/soapGTO.cpp:2537:11: note: ‘cnnd_compressed_raw’ was declared here 2024-05-28T19:13:48,813 2537 | double* cnnd_compressed_raw; 2024-05-28T19:13:48,813 | ^~~~~~~~~~~~~~~~~~~ 2024-05-28T19:13:48,814 dscribe/ext/soapGTO.cpp:2688:23: warning: ‘cnnd_ave_raw’ may be used uninitialized [-Wmaybe-uninitialized] 2024-05-28T19:13:48,814 2688 | delete [] cnnd_ave_raw; 2024-05-28T19:13:48,815 | ^~~~~~~~~~~~ 2024-05-28T19:13:48,816 dscribe/ext/soapGTO.cpp:2529:11: note: ‘cnnd_ave_raw’ was declared here 2024-05-28T19:13:48,816 2529 | double* cnnd_ave_raw; 2024-05-28T19:13:48,817 | ^~~~~~~~~~~~ 2024-05-28T19:13:48,818 dscribe/ext/soapGTO.cpp:2646:39: warning: ‘prCofDZ’ may be used uninitialized [-Wmaybe-uninitialized] 2024-05-28T19:13:48,818 2646 | free(prCofDX); free(prCofDY); free(prCofDZ); 2024-05-28T19:13:48,819 | ~~~~^~~~~~~~~ 2024-05-28T19:13:48,819 dscribe/ext/soapGTO.cpp:2514:11: note: ‘prCofDZ’ was declared here 2024-05-28T19:13:48,820 2514 | double* prCofDZ; 2024-05-28T19:13:48,821 | ^~~~~~~ 2024-05-28T19:13:48,821 dscribe/ext/soapGTO.cpp:2646:24: warning: ‘prCofDY’ may be used uninitialized [-Wmaybe-uninitialized] 2024-05-28T19:13:48,822 2646 | free(prCofDX); free(prCofDY); free(prCofDZ); 2024-05-28T19:13:48,823 | ~~~~^~~~~~~~~ 2024-05-28T19:13:48,824 dscribe/ext/soapGTO.cpp:2513:11: note: ‘prCofDY’ was declared here 2024-05-28T19:13:48,825 2513 | double* prCofDY; 2024-05-28T19:13:48,826 | ^~~~~~~ 2024-05-28T19:13:48,827 dscribe/ext/soapGTO.cpp:2646:9: warning: ‘prCofDX’ may be used uninitialized [-Wmaybe-uninitialized] 2024-05-28T19:13:48,828 2646 | free(prCofDX); free(prCofDY); free(prCofDZ); 2024-05-28T19:13:48,828 | ~~~~^~~~~~~~~ 2024-05-28T19:13:48,829 dscribe/ext/soapGTO.cpp:2512:11: note: ‘prCofDX’ was declared here 2024-05-28T19:13:48,830 2512 | double* prCofDX; 2024-05-28T19:13:48,831 | ^~~~~~~ 2024-05-28T19:13:48,832 dscribe/ext/soapGTO.cpp:2643:56: warning: ‘void free(void*)’ called on pointer returned from a mismatched allocation function [-Wmismatched-new-delete] 2024-05-28T19:13:48,833 2643 | free(exes); free(preCoef); free(bOa); free(aOa); free(cnnd_raw); free(weights); 2024-05-28T19:13:48,833 | ~~~~^~~~~~~~~~ 2024-05-28T19:13:48,834 dscribe/ext/soapGTO.cpp:2527:52: note: returned from ‘void* operator new [](std::size_t)’ 2024-05-28T19:13:48,835 2527 | double* cnnd_raw = new double[nCenters*n_coeffs](); 2024-05-28T19:13:48,835 | ^ 2024-05-28T19:14:04,022 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Idependencies/eigen -Idscribe/ext -I/tmp/pip-build-env-f4fc0ta9/overlay/local/lib/python3.11/dist-packages/pybind11/include -I/tmp/pip-build-env-f4fc0ta9/overlay/local/lib/python3.11/dist-packages/pybind11/include -I/usr/include/python3.11 -c dscribe/ext/soapGeneral.cpp -o build/temp.linux-armv7l-cpython-311/dscribe/ext/soapGeneral.o -std=c++11 -O3 "-I dependencies/eigen/Eigen/" -fvisibility=hidden 2024-05-28T19:14:51,914 dscribe/ext/soapGeneral.cpp: In function ‘double legendre_poly(int, int, double)’: 2024-05-28T19:14:51,914 dscribe/ext/soapGeneral.cpp:1604:17: warning: ‘pll’ may be used uninitialized [-Wmaybe-uninitialized] 2024-05-28T19:14:51,915 1604 | double fact,pll,pmm,pmmp1,somx2; 2024-05-28T19:14:51,916 | ^~~ 2024-05-28T19:14:58,062 dscribe/ext/soapGeneral.cpp: In function ‘void soapGeneral(pybind11::array_t, pybind11::array_t, pybind11::array_t, pybind11::array_t, pybind11::array_t, pybind11::array_t, double, double, int, int, double, pybind11::dict, pybind11::array_t, pybind11::array_t, std::string, std::string, CellList)’: 2024-05-28T19:14:58,063 dscribe/ext/soapGeneral.cpp:1935:13: warning: ‘CsCompressed’ may be used uninitialized [-Wmaybe-uninitialized] 2024-05-28T19:14:58,064 1935 | double* CsCompressed; 2024-05-28T19:14:58,064 | ^~~~~~~~~~~~ 2024-05-28T19:14:58,065 dscribe/ext/soapGeneral.cpp:1929:13: warning: ‘CsAve’ may be used uninitialized [-Wmaybe-uninitialized] 2024-05-28T19:14:58,065 1929 | double* CsAve; 2024-05-28T19:14:58,066 | ^~~~~ 2024-05-28T19:14:58,075 dscribe/ext/soapGeneral.cpp:2110:13: warning: ‘void free(void*)’ called on pointer returned from a mismatched allocation function [-Wmismatched-new-delete] 2024-05-28T19:14:58,076 2110 | free(PsTemp); 2024-05-28T19:14:58,077 | ~~~~^~~~~~~~ 2024-05-28T19:14:58,077 dscribe/ext/soapGeneral.cpp:2077:49: note: returned from ‘void* operator new [](std::size_t)’ 2024-05-28T19:14:58,078 2077 | double* PsTemp = new double[nFeatures*Hs]; 2024-05-28T19:14:58,078 | ^ 2024-05-28T19:15:10,835 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Idependencies/eigen -Idscribe/ext -I/tmp/pip-build-env-f4fc0ta9/overlay/local/lib/python3.11/dist-packages/pybind11/include -I/tmp/pip-build-env-f4fc0ta9/overlay/local/lib/python3.11/dist-packages/pybind11/include -I/usr/include/python3.11 -c dscribe/ext/weighting.cpp -o build/temp.linux-armv7l-cpython-311/dscribe/ext/weighting.o -std=c++11 -O3 "-I dependencies/eigen/Eigen/" -fvisibility=hidden 2024-05-28T19:15:34,588 arm-linux-gnueabihf-g++ -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/dscribe/ext/acsf.o build/temp.linux-armv7l-cpython-311/dscribe/ext/celllist.o build/temp.linux-armv7l-cpython-311/dscribe/ext/coulombmatrix.o build/temp.linux-armv7l-cpython-311/dscribe/ext/descriptor.o build/temp.linux-armv7l-cpython-311/dscribe/ext/descriptorglobal.o build/temp.linux-armv7l-cpython-311/dscribe/ext/descriptorlocal.o build/temp.linux-armv7l-cpython-311/dscribe/ext/ext.o build/temp.linux-armv7l-cpython-311/dscribe/ext/geometry.o build/temp.linux-armv7l-cpython-311/dscribe/ext/mbtr.o build/temp.linux-armv7l-cpython-311/dscribe/ext/soap.o build/temp.linux-armv7l-cpython-311/dscribe/ext/soapGTO.o build/temp.linux-armv7l-cpython-311/dscribe/ext/soapGeneral.o build/temp.linux-armv7l-cpython-311/dscribe/ext/weighting.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/dscribe/ext.cpython-311-arm-linux-gnueabihf.so 2024-05-28T19:15:36,712 installing to build/bdist.linux-armv7l/wheel 2024-05-28T19:15:36,713 running install 2024-05-28T19:15:36,737 running install_lib 2024-05-28T19:15:36,742 creating build/bdist.linux-armv7l 2024-05-28T19:15:36,743 creating build/bdist.linux-armv7l/wheel 2024-05-28T19:15:36,745 creating build/bdist.linux-armv7l/wheel/dscribe 2024-05-28T19:15:36,747 creating build/bdist.linux-armv7l/wheel/dscribe/ext 2024-05-28T19:15:36,748 copying build/lib.linux-armv7l-cpython-311/dscribe/ext/geometry.cpp -> build/bdist.linux-armv7l/wheel/dscribe/ext 2024-05-28T19:15:36,751 copying build/lib.linux-armv7l-cpython-311/dscribe/ext/acsf.cpp -> build/bdist.linux-armv7l/wheel/dscribe/ext 2024-05-28T19:15:36,754 copying build/lib.linux-armv7l-cpython-311/dscribe/ext/descriptor.h -> build/bdist.linux-armv7l/wheel/dscribe/ext 2024-05-28T19:15:36,756 copying build/lib.linux-armv7l-cpython-311/dscribe/ext/celllist.h -> build/bdist.linux-armv7l/wheel/dscribe/ext 2024-05-28T19:15:36,758 copying build/lib.linux-armv7l-cpython-311/dscribe/ext/soap.h -> build/bdist.linux-armv7l/wheel/dscribe/ext 2024-05-28T19:15:36,761 copying build/lib.linux-armv7l-cpython-311/dscribe/ext/soapGeneral.cpp -> build/bdist.linux-armv7l/wheel/dscribe/ext 2024-05-28T19:15:36,764 copying build/lib.linux-armv7l-cpython-311/dscribe/ext/celllist.cpp -> build/bdist.linux-armv7l/wheel/dscribe/ext 2024-05-28T19:15:36,767 copying build/lib.linux-armv7l-cpython-311/dscribe/ext/soap.cpp -> build/bdist.linux-armv7l/wheel/dscribe/ext 2024-05-28T19:15:36,769 copying build/lib.linux-armv7l-cpython-311/dscribe/ext/mbtr.cpp -> build/bdist.linux-armv7l/wheel/dscribe/ext 2024-05-28T19:15:36,773 copying build/lib.linux-armv7l-cpython-311/dscribe/ext/soapGTO.h -> build/bdist.linux-armv7l/wheel/dscribe/ext 2024-05-28T19:15:36,775 copying build/lib.linux-armv7l-cpython-311/dscribe/ext/descriptorglobal.cpp -> build/bdist.linux-armv7l/wheel/dscribe/ext 2024-05-28T19:15:36,777 copying build/lib.linux-armv7l-cpython-311/dscribe/ext/soapGTO.cpp -> build/bdist.linux-armv7l/wheel/dscribe/ext 2024-05-28T19:15:36,790 copying build/lib.linux-armv7l-cpython-311/dscribe/ext/soapGeneral.h -> build/bdist.linux-armv7l/wheel/dscribe/ext 2024-05-28T19:15:36,792 copying build/lib.linux-armv7l-cpython-311/dscribe/ext/coulombmatrix.h -> build/bdist.linux-armv7l/wheel/dscribe/ext 2024-05-28T19:15:36,794 copying build/lib.linux-armv7l-cpython-311/dscribe/ext/descriptorlocal.cpp -> build/bdist.linux-armv7l/wheel/dscribe/ext 2024-05-28T19:15:36,796 copying build/lib.linux-armv7l-cpython-311/dscribe/ext/weighting.cpp -> build/bdist.linux-armv7l/wheel/dscribe/ext 2024-05-28T19:15:36,798 copying build/lib.linux-armv7l-cpython-311/dscribe/ext/ext.cpp -> build/bdist.linux-armv7l/wheel/dscribe/ext 2024-05-28T19:15:36,801 copying build/lib.linux-armv7l-cpython-311/dscribe/ext/geometry.h -> build/bdist.linux-armv7l/wheel/dscribe/ext 2024-05-28T19:15:36,803 copying build/lib.linux-armv7l-cpython-311/dscribe/ext/mbtr.h -> build/bdist.linux-armv7l/wheel/dscribe/ext 2024-05-28T19:15:36,806 copying build/lib.linux-armv7l-cpython-311/dscribe/ext/acsf.h -> build/bdist.linux-armv7l/wheel/dscribe/ext 2024-05-28T19:15:36,808 copying build/lib.linux-armv7l-cpython-311/dscribe/ext/weighting.h -> build/bdist.linux-armv7l/wheel/dscribe/ext 2024-05-28T19:15:36,810 copying build/lib.linux-armv7l-cpython-311/dscribe/ext/descriptor.cpp -> build/bdist.linux-armv7l/wheel/dscribe/ext 2024-05-28T19:15:36,812 copying build/lib.linux-armv7l-cpython-311/dscribe/ext/descriptorglobal.h -> build/bdist.linux-armv7l/wheel/dscribe/ext 2024-05-28T19:15:36,814 copying build/lib.linux-armv7l-cpython-311/dscribe/ext/descriptorlocal.h -> build/bdist.linux-armv7l/wheel/dscribe/ext 2024-05-28T19:15:36,817 copying build/lib.linux-armv7l-cpython-311/dscribe/ext/coulombmatrix.cpp -> build/bdist.linux-armv7l/wheel/dscribe/ext 2024-05-28T19:15:36,819 copying build/lib.linux-armv7l-cpython-311/dscribe/ext.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/dscribe 2024-05-28T19:15:37,294 creating build/bdist.linux-armv7l/wheel/dscribe/kernels 2024-05-28T19:15:37,295 copying build/lib.linux-armv7l-cpython-311/dscribe/kernels/averagekernel.py -> build/bdist.linux-armv7l/wheel/dscribe/kernels 2024-05-28T19:15:37,297 copying build/lib.linux-armv7l-cpython-311/dscribe/kernels/localsimilaritykernel.py -> build/bdist.linux-armv7l/wheel/dscribe/kernels 2024-05-28T19:15:37,299 copying build/lib.linux-armv7l-cpython-311/dscribe/kernels/__init__.py -> build/bdist.linux-armv7l/wheel/dscribe/kernels 2024-05-28T19:15:37,301 copying build/lib.linux-armv7l-cpython-311/dscribe/kernels/rematchkernel.py -> build/bdist.linux-armv7l/wheel/dscribe/kernels 2024-05-28T19:15:37,304 copying build/lib.linux-armv7l-cpython-311/dscribe/__init__.py -> build/bdist.linux-armv7l/wheel/dscribe 2024-05-28T19:15:37,306 creating build/bdist.linux-armv7l/wheel/dscribe/descriptors 2024-05-28T19:15:37,308 copying build/lib.linux-armv7l-cpython-311/dscribe/descriptors/descriptormatrix.py -> build/bdist.linux-armv7l/wheel/dscribe/descriptors 2024-05-28T19:15:37,310 copying build/lib.linux-armv7l-cpython-311/dscribe/descriptors/descriptorglobal.py -> build/bdist.linux-armv7l/wheel/dscribe/descriptors 2024-05-28T19:15:37,312 copying build/lib.linux-armv7l-cpython-311/dscribe/descriptors/sinematrix.py -> build/bdist.linux-armv7l/wheel/dscribe/descriptors 2024-05-28T19:15:37,314 copying build/lib.linux-armv7l-cpython-311/dscribe/descriptors/mbtr.py -> build/bdist.linux-armv7l/wheel/dscribe/descriptors 2024-05-28T19:15:37,316 copying build/lib.linux-armv7l-cpython-311/dscribe/descriptors/descriptorlocal.py -> build/bdist.linux-armv7l/wheel/dscribe/descriptors 2024-05-28T19:15:37,319 copying build/lib.linux-armv7l-cpython-311/dscribe/descriptors/__init__.py -> build/bdist.linux-armv7l/wheel/dscribe/descriptors 2024-05-28T19:15:37,320 copying build/lib.linux-armv7l-cpython-311/dscribe/descriptors/valleoganov.py -> build/bdist.linux-armv7l/wheel/dscribe/descriptors 2024-05-28T19:15:37,322 copying build/lib.linux-armv7l-cpython-311/dscribe/descriptors/acsf.py -> build/bdist.linux-armv7l/wheel/dscribe/descriptors 2024-05-28T19:15:37,324 copying build/lib.linux-armv7l-cpython-311/dscribe/descriptors/descriptor.py -> build/bdist.linux-armv7l/wheel/dscribe/descriptors 2024-05-28T19:15:37,327 copying build/lib.linux-armv7l-cpython-311/dscribe/descriptors/ewaldsummatrix.py -> build/bdist.linux-armv7l/wheel/dscribe/descriptors 2024-05-28T19:15:37,329 copying build/lib.linux-armv7l-cpython-311/dscribe/descriptors/soap.py -> build/bdist.linux-armv7l/wheel/dscribe/descriptors 2024-05-28T19:15:37,332 copying build/lib.linux-armv7l-cpython-311/dscribe/descriptors/lmbtr.py -> build/bdist.linux-armv7l/wheel/dscribe/descriptors 2024-05-28T19:15:37,335 copying build/lib.linux-armv7l-cpython-311/dscribe/descriptors/coulombmatrix.py -> build/bdist.linux-armv7l/wheel/dscribe/descriptors 2024-05-28T19:15:37,337 creating build/bdist.linux-armv7l/wheel/dscribe/core 2024-05-28T19:15:37,338 copying build/lib.linux-armv7l-cpython-311/dscribe/core/lattice.py -> build/bdist.linux-armv7l/wheel/dscribe/core 2024-05-28T19:15:37,340 copying build/lib.linux-armv7l-cpython-311/dscribe/core/__init__.py -> build/bdist.linux-armv7l/wheel/dscribe/core 2024-05-28T19:15:37,342 copying build/lib.linux-armv7l-cpython-311/dscribe/core/system.py -> build/bdist.linux-armv7l/wheel/dscribe/core 2024-05-28T19:15:37,345 creating build/bdist.linux-armv7l/wheel/dscribe/utils 2024-05-28T19:15:37,345 copying build/lib.linux-armv7l-cpython-311/dscribe/utils/stats.py -> build/bdist.linux-armv7l/wheel/dscribe/utils 2024-05-28T19:15:37,348 copying build/lib.linux-armv7l-cpython-311/dscribe/utils/dimensionality.py -> build/bdist.linux-armv7l/wheel/dscribe/utils 2024-05-28T19:15:37,349 copying build/lib.linux-armv7l-cpython-311/dscribe/utils/__init__.py -> build/bdist.linux-armv7l/wheel/dscribe/utils 2024-05-28T19:15:37,351 copying build/lib.linux-armv7l-cpython-311/dscribe/utils/species.py -> build/bdist.linux-armv7l/wheel/dscribe/utils 2024-05-28T19:15:37,353 copying build/lib.linux-armv7l-cpython-311/dscribe/utils/geometry.py -> build/bdist.linux-armv7l/wheel/dscribe/utils 2024-05-28T19:15:37,355 running install_egg_info 2024-05-28T19:15:37,359 Copying dscribe.egg-info to build/bdist.linux-armv7l/wheel/dscribe-2.1.1-py3.11.egg-info 2024-05-28T19:15:37,370 running install_scripts 2024-05-28T19:15:37,421 creating build/bdist.linux-armv7l/wheel/dscribe-2.1.1.dist-info/WHEEL 2024-05-28T19:15:37,423 creating '/tmp/pip-wheel-o2ei03ya/.tmp-gd2bzuaj/dscribe-2.1.1-cp311-cp311-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2024-05-28T19:15:37,426 adding 'dscribe/__init__.py' 2024-05-28T19:15:42,206 adding 'dscribe/ext.cpython-311-arm-linux-gnueabihf.so' 2024-05-28T19:15:42,409 adding 'dscribe/core/__init__.py' 2024-05-28T19:15:42,410 adding 'dscribe/core/lattice.py' 2024-05-28T19:15:42,412 adding 'dscribe/core/system.py' 2024-05-28T19:15:42,414 adding 'dscribe/descriptors/__init__.py' 2024-05-28T19:15:42,417 adding 'dscribe/descriptors/acsf.py' 2024-05-28T19:15:42,418 adding 'dscribe/descriptors/coulombmatrix.py' 2024-05-28T19:15:42,421 adding 'dscribe/descriptors/descriptor.py' 2024-05-28T19:15:42,423 adding 'dscribe/descriptors/descriptorglobal.py' 2024-05-28T19:15:42,425 adding 'dscribe/descriptors/descriptorlocal.py' 2024-05-28T19:15:42,427 adding 'dscribe/descriptors/descriptormatrix.py' 2024-05-28T19:15:42,429 adding 'dscribe/descriptors/ewaldsummatrix.py' 2024-05-28T19:15:42,433 adding 'dscribe/descriptors/lmbtr.py' 2024-05-28T19:15:42,437 adding 'dscribe/descriptors/mbtr.py' 2024-05-28T19:15:42,439 adding 'dscribe/descriptors/sinematrix.py' 2024-05-28T19:15:42,444 adding 'dscribe/descriptors/soap.py' 2024-05-28T19:15:42,445 adding 'dscribe/descriptors/valleoganov.py' 2024-05-28T19:15:42,448 adding 'dscribe/ext/acsf.cpp' 2024-05-28T19:15:42,449 adding 'dscribe/ext/acsf.h' 2024-05-28T19:15:42,450 adding 'dscribe/ext/celllist.cpp' 2024-05-28T19:15:42,452 adding 'dscribe/ext/celllist.h' 2024-05-28T19:15:42,453 adding 'dscribe/ext/coulombmatrix.cpp' 2024-05-28T19:15:42,455 adding 'dscribe/ext/coulombmatrix.h' 2024-05-28T19:15:42,456 adding 'dscribe/ext/descriptor.cpp' 2024-05-28T19:15:42,457 adding 'dscribe/ext/descriptor.h' 2024-05-28T19:15:42,459 adding 'dscribe/ext/descriptorglobal.cpp' 2024-05-28T19:15:42,460 adding 'dscribe/ext/descriptorglobal.h' 2024-05-28T19:15:42,462 adding 'dscribe/ext/descriptorlocal.cpp' 2024-05-28T19:15:42,463 adding 'dscribe/ext/descriptorlocal.h' 2024-05-28T19:15:42,464 adding 'dscribe/ext/ext.cpp' 2024-05-28T19:15:42,466 adding 'dscribe/ext/geometry.cpp' 2024-05-28T19:15:42,467 adding 'dscribe/ext/geometry.h' 2024-05-28T19:15:42,471 adding 'dscribe/ext/mbtr.cpp' 2024-05-28T19:15:42,472 adding 'dscribe/ext/mbtr.h' 2024-05-28T19:15:42,474 adding 'dscribe/ext/soap.cpp' 2024-05-28T19:15:42,475 adding 'dscribe/ext/soap.h' 2024-05-28T19:15:42,506 adding 'dscribe/ext/soapGTO.cpp' 2024-05-28T19:15:42,511 adding 'dscribe/ext/soapGTO.h' 2024-05-28T19:15:42,517 adding 'dscribe/ext/soapGeneral.cpp' 2024-05-28T19:15:42,518 adding 'dscribe/ext/soapGeneral.h' 2024-05-28T19:15:42,520 adding 'dscribe/ext/weighting.cpp' 2024-05-28T19:15:42,521 adding 'dscribe/ext/weighting.h' 2024-05-28T19:15:42,523 adding 'dscribe/kernels/__init__.py' 2024-05-28T19:15:42,524 adding 'dscribe/kernels/averagekernel.py' 2024-05-28T19:15:42,526 adding 'dscribe/kernels/localsimilaritykernel.py' 2024-05-28T19:15:42,527 adding 'dscribe/kernels/rematchkernel.py' 2024-05-28T19:15:42,529 adding 'dscribe/utils/__init__.py' 2024-05-28T19:15:42,530 adding 'dscribe/utils/dimensionality.py' 2024-05-28T19:15:42,532 adding 'dscribe/utils/geometry.py' 2024-05-28T19:15:42,534 adding 'dscribe/utils/species.py' 2024-05-28T19:15:42,535 adding 'dscribe/utils/stats.py' 2024-05-28T19:15:42,538 adding 'dscribe-2.1.1.dist-info/LICENSE' 2024-05-28T19:15:42,540 adding 'dscribe-2.1.1.dist-info/METADATA' 2024-05-28T19:15:42,542 adding 'dscribe-2.1.1.dist-info/WHEEL' 2024-05-28T19:15:42,543 adding 'dscribe-2.1.1.dist-info/top_level.txt' 2024-05-28T19:15:42,544 adding 'dscribe-2.1.1.dist-info/RECORD' 2024-05-28T19:15:42,645 removing build/bdist.linux-armv7l/wheel 2024-05-28T19:15:42,797 Building wheel for dscribe (pyproject.toml): finished with status 'done' 2024-05-28T19:15:42,992 Created wheel for dscribe: filename=dscribe-2.1.1-cp311-cp311-linux_armv7l.whl size=10018612 sha256=171beb940e97c41a500cabb522a40b67258bb160a42f3959ab8e6c41308aff44 2024-05-28T19:15:42,994 Stored in directory: /tmp/pip-ephem-wheel-cache-dlqys6wa/wheels/7a/91/64/b852ea053110cd30fe33400af8bfea55331e3169279aa362cb 2024-05-28T19:15:43,017 Successfully built dscribe 2024-05-28T19:15:43,255 Removed build tracker: '/tmp/pip-build-tracker-vk_h9b58'