2024-05-28T22:23:11,337 Created temporary directory: /tmp/pip-build-tracker-x9p1isgv 2024-05-28T22:23:11,338 Initialized build tracking at /tmp/pip-build-tracker-x9p1isgv 2024-05-28T22:23:11,339 Created build tracker: /tmp/pip-build-tracker-x9p1isgv 2024-05-28T22:23:11,339 Entered build tracker: /tmp/pip-build-tracker-x9p1isgv 2024-05-28T22:23:11,340 Created temporary directory: /tmp/pip-wheel-tdlbm8hm 2024-05-28T22:23:11,343 Created temporary directory: /tmp/pip-ephem-wheel-cache-y30yfns7 2024-05-28T22:23:11,364 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2024-05-28T22:23:11,368 2 location(s) to search for versions of sigprofilerassignment: 2024-05-28T22:23:11,368 * https://pypi.org/simple/sigprofilerassignment/ 2024-05-28T22:23:11,368 * https://www.piwheels.org/simple/sigprofilerassignment/ 2024-05-28T22:23:11,368 Fetching project page and analyzing links: https://pypi.org/simple/sigprofilerassignment/ 2024-05-28T22:23:11,369 Getting page 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2024-05-28T22:23:11,616 Skipping link: No binaries permitted for sigprofilerassignment: https://files.pythonhosted.org/packages/9d/56/1968aaf35ec8597df716ebb6c5cbca6a61892f8a293150f312985a500231/SigProfilerAssignment-0.0.5-py3-none-any.whl (from https://pypi.org/simple/sigprofilerassignment/) 2024-05-28T22:23:11,617 Found link https://files.pythonhosted.org/packages/79/c4/ed14da5d80f43e136c7638db1341dda950f510b9e283f3233a8aa7aabf32/SigProfilerAssignment-0.0.5.tar.gz (from https://pypi.org/simple/sigprofilerassignment/), version: 0.0.5 2024-05-28T22:23:11,618 Skipping link: No binaries permitted for sigprofilerassignment: https://files.pythonhosted.org/packages/66/ab/85f6ffb88701a726aa49666e007b52dbd3de21f036a6b8c2ebdeb9f1e462/SigProfilerAssignment-0.0.6-py3-none-any.whl (from https://pypi.org/simple/sigprofilerassignment/) 2024-05-28T22:23:11,618 Found link 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https://files.pythonhosted.org/packages/af/fb/e1dc6d89cf5753a64ba91adb630b2b299ee5849056318d44e1e357de8780/SigProfilerAssignment-0.1.0.tar.gz (from https://pypi.org/simple/sigprofilerassignment/), version: 0.1.0 2024-05-28T22:23:11,655 Skipping link: No binaries permitted for sigprofilerassignment: https://files.pythonhosted.org/packages/9f/08/fe4383ee580e18a34271be597b35959152502d4d4faf4df58a7a80ede5a8/SigProfilerAssignment-0.1.1-py3-none-any.whl (from https://pypi.org/simple/sigprofilerassignment/) 2024-05-28T22:23:11,656 Found link https://files.pythonhosted.org/packages/7f/7f/6ec76f934311e97bb2fc3f3c578cc3ec6fd15383a5c0ae3bb6f92f4bccfa/SigProfilerAssignment-0.1.1.tar.gz (from https://pypi.org/simple/sigprofilerassignment/), version: 0.1.1 2024-05-28T22:23:11,656 Skipping link: No binaries permitted for sigprofilerassignment: https://files.pythonhosted.org/packages/9d/f8/dc024a670e14f1105d727b30a26151764bbe0a19681649e500a39a5c0180/SigProfilerAssignment-0.1.2-py3-none-any.whl (from https://pypi.org/simple/sigprofilerassignment/) 2024-05-28T22:23:11,657 Found link https://files.pythonhosted.org/packages/46/e6/d2cbd286bcdfd6344de95777e91e22722b5b7cc5edb7e8fd8f93f0c05913/SigProfilerAssignment-0.1.2.tar.gz (from https://pypi.org/simple/sigprofilerassignment/), version: 0.1.2 2024-05-28T22:23:11,658 Skipping link: No binaries permitted for sigprofilerassignment: https://files.pythonhosted.org/packages/5f/af/3d33b831ec9e5beadc94e84c5eb7e8752fc94e419ffbd6e56e1937dc24d0/SigProfilerAssignment-0.1.3-py3-none-any.whl (from https://pypi.org/simple/sigprofilerassignment/) 2024-05-28T22:23:11,658 Found link https://files.pythonhosted.org/packages/68/db/efeed9f399d5c5a39c84548d0d1246d238c951a245cb8c76ef8b8f9c7282/SigProfilerAssignment-0.1.3.tar.gz (from https://pypi.org/simple/sigprofilerassignment/), version: 0.1.3 2024-05-28T22:23:11,659 Skipping link: No binaries permitted for sigprofilerassignment: 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2024-05-28T22:23:11,661 Skipping link: No binaries permitted for sigprofilerassignment: https://files.pythonhosted.org/packages/ca/94/05a0f366dbf50eecbbf3d54b86b2ec6a6d693432cf0f52025afd7bbeb8f3/SigProfilerAssignment-0.1.6-py3-none-any.whl (from https://pypi.org/simple/sigprofilerassignment/) 2024-05-28T22:23:11,661 Found link https://files.pythonhosted.org/packages/8d/a2/9eb27a0cd8df525ebd147c201cd07c6e7816bf077980cc30565ec81e83bf/SigProfilerAssignment-0.1.6.tar.gz (from https://pypi.org/simple/sigprofilerassignment/), version: 0.1.6 2024-05-28T22:23:11,662 Fetching project page and analyzing links: https://www.piwheels.org/simple/sigprofilerassignment/ 2024-05-28T22:23:11,663 Getting page https://www.piwheels.org/simple/sigprofilerassignment/ 2024-05-28T22:23:11,664 Found index url https://www.piwheels.org/simple/ 2024-05-28T22:23:11,885 Fetched page https://www.piwheels.org/simple/sigprofilerassignment/ as text/html 2024-05-28T22:23:11,896 Skipping link: No binaries permitted for 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https://www.piwheels.org/simple/sigprofilerassignment/SigProfilerAssignment-0.0.3-py3-none-any.whl#sha256=8b18bba4e61a6040884d0cddd9c4547a5bfe85135968d4416016dccc5d165d28 (from https://www.piwheels.org/simple/sigprofilerassignment/) 2024-05-28T22:23:11,918 Skipping link: No binaries permitted for sigprofilerassignment: https://www.piwheels.org/simple/sigprofilerassignment/SigProfilerAssignment-0.0.2-py3-none-any.whl#sha256=6b7c937475ced548e412ca91f1beb750ce7d02abc32ad0a1e1d985353c562bae (from https://www.piwheels.org/simple/sigprofilerassignment/) 2024-05-28T22:23:11,918 Skipping link: not a file: https://www.piwheels.org/simple/sigprofilerassignment/ 2024-05-28T22:23:11,919 Skipping link: not a file: https://pypi.org/simple/sigprofilerassignment/ 2024-05-28T22:23:11,942 Given no hashes to check 1 links for project 'sigprofilerassignment': discarding no candidates 2024-05-28T22:23:11,961 Collecting sigprofilerassignment==0.1.6 2024-05-28T22:23:11,963 Created temporary directory: /tmp/pip-unpack-3tq2sss8 2024-05-28T22:23:12,426 Downloading SigProfilerAssignment-0.1.6.tar.gz (5.4 MB) 2024-05-28T22:23:14,125 Added sigprofilerassignment==0.1.6 from https://files.pythonhosted.org/packages/8d/a2/9eb27a0cd8df525ebd147c201cd07c6e7816bf077980cc30565ec81e83bf/SigProfilerAssignment-0.1.6.tar.gz to build tracker '/tmp/pip-build-tracker-x9p1isgv' 2024-05-28T22:23:14,128 Running setup.py (path:/tmp/pip-wheel-tdlbm8hm/sigprofilerassignment_97c7318d24354aa5abde519b9c2def45/setup.py) egg_info for package sigprofilerassignment 2024-05-28T22:23:14,129 Created temporary directory: /tmp/pip-pip-egg-info-rmjz7yhx 2024-05-28T22:23:14,129 Preparing metadata (setup.py): started 2024-05-28T22:23:14,131 Running command python setup.py egg_info 2024-05-28T22:23:15,289 running egg_info 2024-05-28T22:23:15,291 creating /tmp/pip-pip-egg-info-rmjz7yhx/SigProfilerAssignment.egg-info 2024-05-28T22:23:15,316 writing /tmp/pip-pip-egg-info-rmjz7yhx/SigProfilerAssignment.egg-info/PKG-INFO 2024-05-28T22:23:15,321 writing dependency_links to /tmp/pip-pip-egg-info-rmjz7yhx/SigProfilerAssignment.egg-info/dependency_links.txt 2024-05-28T22:23:15,323 writing entry points to /tmp/pip-pip-egg-info-rmjz7yhx/SigProfilerAssignment.egg-info/entry_points.txt 2024-05-28T22:23:15,325 writing requirements to /tmp/pip-pip-egg-info-rmjz7yhx/SigProfilerAssignment.egg-info/requires.txt 2024-05-28T22:23:15,326 writing top-level names to /tmp/pip-pip-egg-info-rmjz7yhx/SigProfilerAssignment.egg-info/top_level.txt 2024-05-28T22:23:15,327 writing manifest file '/tmp/pip-pip-egg-info-rmjz7yhx/SigProfilerAssignment.egg-info/SOURCES.txt' 2024-05-28T22:23:15,409 reading manifest file '/tmp/pip-pip-egg-info-rmjz7yhx/SigProfilerAssignment.egg-info/SOURCES.txt' 2024-05-28T22:23:15,411 reading manifest template 'MANIFEST.in' 2024-05-28T22:23:15,426 adding license file 'LICENSE.txt' 2024-05-28T22:23:15,433 writing manifest file '/tmp/pip-pip-egg-info-rmjz7yhx/SigProfilerAssignment.egg-info/SOURCES.txt' 2024-05-28T22:23:15,552 Preparing metadata (setup.py): finished with status 'done' 2024-05-28T22:23:15,556 Source in /tmp/pip-wheel-tdlbm8hm/sigprofilerassignment_97c7318d24354aa5abde519b9c2def45 has version 0.1.6, which satisfies requirement sigprofilerassignment==0.1.6 from https://files.pythonhosted.org/packages/8d/a2/9eb27a0cd8df525ebd147c201cd07c6e7816bf077980cc30565ec81e83bf/SigProfilerAssignment-0.1.6.tar.gz 2024-05-28T22:23:15,557 Removed sigprofilerassignment==0.1.6 from https://files.pythonhosted.org/packages/8d/a2/9eb27a0cd8df525ebd147c201cd07c6e7816bf077980cc30565ec81e83bf/SigProfilerAssignment-0.1.6.tar.gz from build tracker '/tmp/pip-build-tracker-x9p1isgv' 2024-05-28T22:23:15,562 Created temporary directory: /tmp/pip-unpack-xwhukin4 2024-05-28T22:23:15,563 Created temporary directory: /tmp/pip-unpack-jf5maswz 2024-05-28T22:23:15,584 Building wheels for collected packages: sigprofilerassignment 2024-05-28T22:23:15,588 Created temporary directory: /tmp/pip-wheel-tr86v0cf 2024-05-28T22:23:15,588 Building wheel for sigprofilerassignment (setup.py): started 2024-05-28T22:23:15,589 Destination directory: /tmp/pip-wheel-tr86v0cf 2024-05-28T22:23:15,590 Running command python setup.py bdist_wheel 2024-05-28T22:23:16,655 running bdist_wheel 2024-05-28T22:23:16,756 running build 2024-05-28T22:23:16,756 running build_py 2024-05-28T22:23:16,786 creating build 2024-05-28T22:23:16,786 creating build/lib 2024-05-28T22:23:16,787 creating build/lib/SigProfilerAssignment 2024-05-28T22:23:16,789 copying SigProfilerAssignment/decomposition.py -> build/lib/SigProfilerAssignment 2024-05-28T22:23:16,792 copying SigProfilerAssignment/Analyzer.py -> build/lib/SigProfilerAssignment 2024-05-28T22:23:16,794 copying SigProfilerAssignment/__init__.py -> build/lib/SigProfilerAssignment 2024-05-28T22:23:16,796 copying SigProfilerAssignment/SigProfilerAssignment_CLI.py -> build/lib/SigProfilerAssignment 2024-05-28T22:23:16,800 copying SigProfilerAssignment/decompose_subroutines.py -> build/lib/SigProfilerAssignment 2024-05-28T22:23:16,803 copying SigProfilerAssignment/version.py -> build/lib/SigProfilerAssignment 2024-05-28T22:23:16,805 copying SigProfilerAssignment/single_sample.py -> build/lib/SigProfilerAssignment 2024-05-28T22:23:16,808 running egg_info 2024-05-28T22:23:16,865 writing SigProfilerAssignment.egg-info/PKG-INFO 2024-05-28T22:23:16,869 writing dependency_links to SigProfilerAssignment.egg-info/dependency_links.txt 2024-05-28T22:23:16,871 writing entry points to SigProfilerAssignment.egg-info/entry_points.txt 2024-05-28T22:23:16,872 writing requirements to SigProfilerAssignment.egg-info/requires.txt 2024-05-28T22:23:16,873 writing top-level names to SigProfilerAssignment.egg-info/top_level.txt 2024-05-28T22:23:16,901 reading manifest file 'SigProfilerAssignment.egg-info/SOURCES.txt' 2024-05-28T22:23:16,907 reading manifest template 'MANIFEST.in' 2024-05-28T22:23:16,918 adding license file 'LICENSE.txt' 2024-05-28T22:23:16,928 writing manifest file 'SigProfilerAssignment.egg-info/SOURCES.txt' 2024-05-28T22:23:16,931 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'SigProfilerAssignment.DecompositionPlots' is absent from the `packages` configuration. 2024-05-28T22:23:16,931 !! 2024-05-28T22:23:16,933 ******************************************************************************** 2024-05-28T22:23:16,933 ############################ 2024-05-28T22:23:16,933 # Package would be ignored # 2024-05-28T22:23:16,934 ############################ 2024-05-28T22:23:16,934 Python recognizes 'SigProfilerAssignment.DecompositionPlots' as an importable package[^1], 2024-05-28T22:23:16,935 but it is absent from setuptools' `packages` configuration. 2024-05-28T22:23:16,936 This leads to an ambiguous overall configuration. If you want to distribute this 2024-05-28T22:23:16,936 package, please make sure that 'SigProfilerAssignment.DecompositionPlots' is explicitly added 2024-05-28T22:23:16,937 to the `packages` configuration field. 2024-05-28T22:23:16,937 Alternatively, you can also rely on setuptools' discovery methods 2024-05-28T22:23:16,938 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-05-28T22:23:16,938 instead of `find_packages(...)`/`find:`). 2024-05-28T22:23:16,939 You can read more about "package discovery" on setuptools documentation page: 2024-05-28T22:23:16,940 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-05-28T22:23:16,941 If you don't want 'SigProfilerAssignment.DecompositionPlots' to be distributed and are 2024-05-28T22:23:16,941 already explicitly excluding 'SigProfilerAssignment.DecompositionPlots' via 2024-05-28T22:23:16,942 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-05-28T22:23:16,942 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-05-28T22:23:16,943 combination with a more fine grained `package-data` configuration. 2024-05-28T22:23:16,943 You can read more about "package data files" on setuptools documentation page: 2024-05-28T22:23:16,945 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-05-28T22:23:16,946 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-05-28T22:23:16,947 even if it does not contain any `.py` files. 2024-05-28T22:23:16,947 On the other hand, currently there is no concept of package data 2024-05-28T22:23:16,948 directory, all directories are treated like packages. 2024-05-28T22:23:16,948 ******************************************************************************** 2024-05-28T22:23:16,949 !! 2024-05-28T22:23:16,950 check.warn(importable) 2024-05-28T22:23:16,950 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'SigProfilerAssignment.DecompositionPlots.ReferenceFiles' is absent from the `packages` configuration. 2024-05-28T22:23:16,951 !! 2024-05-28T22:23:16,952 ******************************************************************************** 2024-05-28T22:23:16,953 ############################ 2024-05-28T22:23:16,953 # Package would be ignored # 2024-05-28T22:23:16,954 ############################ 2024-05-28T22:23:16,954 Python recognizes 'SigProfilerAssignment.DecompositionPlots.ReferenceFiles' as an importable package[^1], 2024-05-28T22:23:16,955 but it is absent from setuptools' `packages` configuration. 2024-05-28T22:23:16,956 This leads to an ambiguous overall configuration. If you want to distribute this 2024-05-28T22:23:16,956 package, please make sure that 'SigProfilerAssignment.DecompositionPlots.ReferenceFiles' is explicitly added 2024-05-28T22:23:16,957 to the `packages` configuration field. 2024-05-28T22:23:16,958 Alternatively, you can also rely on setuptools' discovery methods 2024-05-28T22:23:16,959 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-05-28T22:23:16,959 instead of `find_packages(...)`/`find:`). 2024-05-28T22:23:16,961 You can read more about "package discovery" on setuptools documentation page: 2024-05-28T22:23:16,961 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-05-28T22:23:16,962 If you don't want 'SigProfilerAssignment.DecompositionPlots.ReferenceFiles' to be distributed and are 2024-05-28T22:23:16,962 already explicitly excluding 'SigProfilerAssignment.DecompositionPlots.ReferenceFiles' via 2024-05-28T22:23:16,963 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-05-28T22:23:16,963 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-05-28T22:23:16,964 combination with a more fine grained `package-data` configuration. 2024-05-28T22:23:16,965 You can read more about "package data files" on setuptools documentation page: 2024-05-28T22:23:16,966 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-05-28T22:23:16,967 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-05-28T22:23:16,967 even if it does not contain any `.py` files. 2024-05-28T22:23:16,968 On the other hand, currently there is no concept of package data 2024-05-28T22:23:16,968 directory, all directories are treated like packages. 2024-05-28T22:23:16,969 ******************************************************************************** 2024-05-28T22:23:16,969 !! 2024-05-28T22:23:16,970 check.warn(importable) 2024-05-28T22:23:16,971 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'SigProfilerAssignment.DecompositionPlots.ReferenceFiles.Fonts' is absent from the `packages` configuration. 2024-05-28T22:23:16,971 !! 2024-05-28T22:23:16,972 ******************************************************************************** 2024-05-28T22:23:16,973 ############################ 2024-05-28T22:23:16,973 # Package would be ignored # 2024-05-28T22:23:16,974 ############################ 2024-05-28T22:23:16,974 Python recognizes 'SigProfilerAssignment.DecompositionPlots.ReferenceFiles.Fonts' as an importable package[^1], 2024-05-28T22:23:16,975 but it is absent from setuptools' `packages` configuration. 2024-05-28T22:23:16,976 This leads to an ambiguous overall configuration. If you want to distribute this 2024-05-28T22:23:16,976 package, please make sure that 'SigProfilerAssignment.DecompositionPlots.ReferenceFiles.Fonts' is explicitly added 2024-05-28T22:23:16,977 to the `packages` configuration field. 2024-05-28T22:23:16,978 Alternatively, you can also rely on setuptools' discovery methods 2024-05-28T22:23:16,978 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-05-28T22:23:16,979 instead of `find_packages(...)`/`find:`). 2024-05-28T22:23:16,980 You can read more about "package discovery" on setuptools documentation page: 2024-05-28T22:23:16,981 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-05-28T22:23:16,982 If you don't want 'SigProfilerAssignment.DecompositionPlots.ReferenceFiles.Fonts' to be distributed and are 2024-05-28T22:23:16,983 already explicitly excluding 'SigProfilerAssignment.DecompositionPlots.ReferenceFiles.Fonts' via 2024-05-28T22:23:16,984 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-05-28T22:23:16,984 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-05-28T22:23:16,985 combination with a more fine grained `package-data` configuration. 2024-05-28T22:23:16,986 You can read more about "package data files" on setuptools documentation page: 2024-05-28T22:23:16,987 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-05-28T22:23:16,988 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-05-28T22:23:16,989 even if it does not contain any `.py` files. 2024-05-28T22:23:16,989 On the other hand, currently there is no concept of package data 2024-05-28T22:23:16,990 directory, all directories are treated like packages. 2024-05-28T22:23:16,990 ******************************************************************************** 2024-05-28T22:23:16,991 !! 2024-05-28T22:23:16,991 check.warn(importable) 2024-05-28T22:23:16,992 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'SigProfilerAssignment.controllers' is absent from the `packages` configuration. 2024-05-28T22:23:16,992 !! 2024-05-28T22:23:16,993 ******************************************************************************** 2024-05-28T22:23:16,994 ############################ 2024-05-28T22:23:16,994 # Package would be ignored # 2024-05-28T22:23:16,994 ############################ 2024-05-28T22:23:16,995 Python recognizes 'SigProfilerAssignment.controllers' as an importable package[^1], 2024-05-28T22:23:16,995 but it is absent from setuptools' `packages` configuration. 2024-05-28T22:23:16,996 This leads to an ambiguous overall configuration. If you want to distribute this 2024-05-28T22:23:16,997 package, please make sure that 'SigProfilerAssignment.controllers' is explicitly added 2024-05-28T22:23:16,997 to the `packages` configuration field. 2024-05-28T22:23:16,998 Alternatively, you can also rely on setuptools' discovery methods 2024-05-28T22:23:16,999 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-05-28T22:23:17,000 instead of `find_packages(...)`/`find:`). 2024-05-28T22:23:17,001 You can read more about "package discovery" on setuptools documentation page: 2024-05-28T22:23:17,001 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-05-28T22:23:17,002 If you don't want 'SigProfilerAssignment.controllers' to be distributed and are 2024-05-28T22:23:17,003 already explicitly excluding 'SigProfilerAssignment.controllers' via 2024-05-28T22:23:17,004 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-05-28T22:23:17,005 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-05-28T22:23:17,006 combination with a more fine grained `package-data` configuration. 2024-05-28T22:23:17,007 You can read more about "package data files" on setuptools documentation page: 2024-05-28T22:23:17,008 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-05-28T22:23:17,010 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-05-28T22:23:17,010 even if it does not contain any `.py` files. 2024-05-28T22:23:17,011 On the other hand, currently there is no concept of package data 2024-05-28T22:23:17,011 directory, all directories are treated like packages. 2024-05-28T22:23:17,012 ******************************************************************************** 2024-05-28T22:23:17,013 !! 2024-05-28T22:23:17,013 check.warn(importable) 2024-05-28T22:23:17,014 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'SigProfilerAssignment.data' is absent from the `packages` configuration. 2024-05-28T22:23:17,014 !! 2024-05-28T22:23:17,015 ******************************************************************************** 2024-05-28T22:23:17,016 ############################ 2024-05-28T22:23:17,016 # Package would be ignored # 2024-05-28T22:23:17,017 ############################ 2024-05-28T22:23:17,017 Python recognizes 'SigProfilerAssignment.data' as an importable package[^1], 2024-05-28T22:23:17,018 but it is absent from setuptools' `packages` configuration. 2024-05-28T22:23:17,019 This leads to an ambiguous overall configuration. If you want to distribute this 2024-05-28T22:23:17,019 package, please make sure that 'SigProfilerAssignment.data' is explicitly added 2024-05-28T22:23:17,020 to the `packages` configuration field. 2024-05-28T22:23:17,020 Alternatively, you can also rely on setuptools' discovery methods 2024-05-28T22:23:17,021 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-05-28T22:23:17,021 instead of `find_packages(...)`/`find:`). 2024-05-28T22:23:17,022 You can read more about "package discovery" on setuptools documentation page: 2024-05-28T22:23:17,023 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-05-28T22:23:17,024 If you don't want 'SigProfilerAssignment.data' to be distributed and are 2024-05-28T22:23:17,025 already explicitly excluding 'SigProfilerAssignment.data' via 2024-05-28T22:23:17,025 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-05-28T22:23:17,026 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-05-28T22:23:17,027 combination with a more fine grained `package-data` configuration. 2024-05-28T22:23:17,028 You can read more about "package data files" on setuptools documentation page: 2024-05-28T22:23:17,029 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-05-28T22:23:17,031 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-05-28T22:23:17,031 even if it does not contain any `.py` files. 2024-05-28T22:23:17,032 On the other hand, currently there is no concept of package data 2024-05-28T22:23:17,032 directory, all directories are treated like packages. 2024-05-28T22:23:17,033 ******************************************************************************** 2024-05-28T22:23:17,034 !! 2024-05-28T22:23:17,035 check.warn(importable) 2024-05-28T22:23:17,035 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'SigProfilerAssignment.data.Reference_Signatures.GRCh37' is absent from the `packages` configuration. 2024-05-28T22:23:17,036 !! 2024-05-28T22:23:17,037 ******************************************************************************** 2024-05-28T22:23:17,038 ############################ 2024-05-28T22:23:17,038 # Package would be ignored # 2024-05-28T22:23:17,039 ############################ 2024-05-28T22:23:17,039 Python recognizes 'SigProfilerAssignment.data.Reference_Signatures.GRCh37' as an importable package[^1], 2024-05-28T22:23:17,040 but it is absent from setuptools' `packages` configuration. 2024-05-28T22:23:17,041 This leads to an ambiguous overall configuration. If you want to distribute this 2024-05-28T22:23:17,041 package, please make sure that 'SigProfilerAssignment.data.Reference_Signatures.GRCh37' is explicitly added 2024-05-28T22:23:17,042 to the `packages` configuration field. 2024-05-28T22:23:17,043 Alternatively, you can also rely on setuptools' discovery methods 2024-05-28T22:23:17,043 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-05-28T22:23:17,044 instead of `find_packages(...)`/`find:`). 2024-05-28T22:23:17,045 You can read more about "package discovery" on setuptools documentation page: 2024-05-28T22:23:17,046 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-05-28T22:23:17,047 If you don't want 'SigProfilerAssignment.data.Reference_Signatures.GRCh37' to be distributed and are 2024-05-28T22:23:17,047 already explicitly excluding 'SigProfilerAssignment.data.Reference_Signatures.GRCh37' via 2024-05-28T22:23:17,048 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-05-28T22:23:17,048 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-05-28T22:23:17,049 combination with a more fine grained `package-data` configuration. 2024-05-28T22:23:17,049 You can read more about "package data files" on setuptools documentation page: 2024-05-28T22:23:17,050 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-05-28T22:23:17,051 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-05-28T22:23:17,052 even if it does not contain any `.py` files. 2024-05-28T22:23:17,052 On the other hand, currently there is no concept of package data 2024-05-28T22:23:17,053 directory, all directories are treated like packages. 2024-05-28T22:23:17,053 ******************************************************************************** 2024-05-28T22:23:17,054 !! 2024-05-28T22:23:17,054 check.warn(importable) 2024-05-28T22:23:17,055 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'SigProfilerAssignment.data.Reference_Signatures.GRCh38' is absent from the `packages` configuration. 2024-05-28T22:23:17,055 !! 2024-05-28T22:23:17,056 ******************************************************************************** 2024-05-28T22:23:17,057 ############################ 2024-05-28T22:23:17,057 # Package would be ignored # 2024-05-28T22:23:17,058 ############################ 2024-05-28T22:23:17,058 Python recognizes 'SigProfilerAssignment.data.Reference_Signatures.GRCh38' as an importable package[^1], 2024-05-28T22:23:17,059 but it is absent from setuptools' `packages` configuration. 2024-05-28T22:23:17,060 This leads to an ambiguous overall configuration. If you want to distribute this 2024-05-28T22:23:17,061 package, please make sure that 'SigProfilerAssignment.data.Reference_Signatures.GRCh38' is explicitly added 2024-05-28T22:23:17,061 to the `packages` configuration field. 2024-05-28T22:23:17,063 Alternatively, you can also rely on setuptools' discovery methods 2024-05-28T22:23:17,063 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-05-28T22:23:17,064 instead of `find_packages(...)`/`find:`). 2024-05-28T22:23:17,065 You can read more about "package discovery" on setuptools documentation page: 2024-05-28T22:23:17,066 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-05-28T22:23:17,067 If you don't want 'SigProfilerAssignment.data.Reference_Signatures.GRCh38' to be distributed and are 2024-05-28T22:23:17,068 already explicitly excluding 'SigProfilerAssignment.data.Reference_Signatures.GRCh38' via 2024-05-28T22:23:17,068 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-05-28T22:23:17,069 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-05-28T22:23:17,069 combination with a more fine grained `package-data` configuration. 2024-05-28T22:23:17,070 You can read more about "package data files" on setuptools documentation page: 2024-05-28T22:23:17,072 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-05-28T22:23:17,073 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-05-28T22:23:17,074 even if it does not contain any `.py` files. 2024-05-28T22:23:17,075 On the other hand, currently there is no concept of package data 2024-05-28T22:23:17,075 directory, all directories are treated like packages. 2024-05-28T22:23:17,076 ******************************************************************************** 2024-05-28T22:23:17,077 !! 2024-05-28T22:23:17,077 check.warn(importable) 2024-05-28T22:23:17,078 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'SigProfilerAssignment.data.Reference_Signatures.mm10' is absent from the `packages` configuration. 2024-05-28T22:23:17,078 !! 2024-05-28T22:23:17,079 ******************************************************************************** 2024-05-28T22:23:17,079 ############################ 2024-05-28T22:23:17,080 # Package would be ignored # 2024-05-28T22:23:17,080 ############################ 2024-05-28T22:23:17,081 Python recognizes 'SigProfilerAssignment.data.Reference_Signatures.mm10' as an importable package[^1], 2024-05-28T22:23:17,081 but it is absent from setuptools' `packages` configuration. 2024-05-28T22:23:17,082 This leads to an ambiguous overall configuration. If you want to distribute this 2024-05-28T22:23:17,082 package, please make sure that 'SigProfilerAssignment.data.Reference_Signatures.mm10' is explicitly added 2024-05-28T22:23:17,083 to the `packages` configuration field. 2024-05-28T22:23:17,084 Alternatively, you can also rely on setuptools' discovery methods 2024-05-28T22:23:17,084 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-05-28T22:23:17,085 instead of `find_packages(...)`/`find:`). 2024-05-28T22:23:17,085 You can read more about "package discovery" on setuptools documentation page: 2024-05-28T22:23:17,086 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-05-28T22:23:17,087 If you don't want 'SigProfilerAssignment.data.Reference_Signatures.mm10' to be distributed and are 2024-05-28T22:23:17,088 already explicitly excluding 'SigProfilerAssignment.data.Reference_Signatures.mm10' via 2024-05-28T22:23:17,088 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-05-28T22:23:17,089 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-05-28T22:23:17,089 combination with a more fine grained `package-data` configuration. 2024-05-28T22:23:17,090 You can read more about "package data files" on setuptools documentation page: 2024-05-28T22:23:17,091 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-05-28T22:23:17,093 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-05-28T22:23:17,093 even if it does not contain any `.py` files. 2024-05-28T22:23:17,094 On the other hand, currently there is no concept of package data 2024-05-28T22:23:17,094 directory, all directories are treated like packages. 2024-05-28T22:23:17,095 ******************************************************************************** 2024-05-28T22:23:17,096 !! 2024-05-28T22:23:17,096 check.warn(importable) 2024-05-28T22:23:17,097 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'SigProfilerAssignment.data.Reference_Signatures.mm9' is absent from the `packages` configuration. 2024-05-28T22:23:17,097 !! 2024-05-28T22:23:17,098 ******************************************************************************** 2024-05-28T22:23:17,099 ############################ 2024-05-28T22:23:17,099 # Package would be ignored # 2024-05-28T22:23:17,100 ############################ 2024-05-28T22:23:17,100 Python recognizes 'SigProfilerAssignment.data.Reference_Signatures.mm9' as an importable package[^1], 2024-05-28T22:23:17,101 but it is absent from setuptools' `packages` configuration. 2024-05-28T22:23:17,102 This leads to an ambiguous overall configuration. If you want to distribute this 2024-05-28T22:23:17,103 package, please make sure that 'SigProfilerAssignment.data.Reference_Signatures.mm9' is explicitly added 2024-05-28T22:23:17,103 to the `packages` configuration field. 2024-05-28T22:23:17,104 Alternatively, you can also rely on setuptools' discovery methods 2024-05-28T22:23:17,105 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-05-28T22:23:17,105 instead of `find_packages(...)`/`find:`). 2024-05-28T22:23:17,106 You can read more about "package discovery" on setuptools documentation page: 2024-05-28T22:23:17,107 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-05-28T22:23:17,108 If you don't want 'SigProfilerAssignment.data.Reference_Signatures.mm9' to be distributed and are 2024-05-28T22:23:17,108 already explicitly excluding 'SigProfilerAssignment.data.Reference_Signatures.mm9' via 2024-05-28T22:23:17,109 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-05-28T22:23:17,109 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-05-28T22:23:17,110 combination with a more fine grained `package-data` configuration. 2024-05-28T22:23:17,111 You can read more about "package data files" on setuptools documentation page: 2024-05-28T22:23:17,112 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-05-28T22:23:17,113 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-05-28T22:23:17,113 even if it does not contain any `.py` files. 2024-05-28T22:23:17,114 On the other hand, currently there is no concept of package data 2024-05-28T22:23:17,114 directory, all directories are treated like packages. 2024-05-28T22:23:17,115 ******************************************************************************** 2024-05-28T22:23:17,116 !! 2024-05-28T22:23:17,116 check.warn(importable) 2024-05-28T22:23:17,117 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'SigProfilerAssignment.data.Reference_Signatures.rn6' is absent from the `packages` configuration. 2024-05-28T22:23:17,117 !! 2024-05-28T22:23:17,118 ******************************************************************************** 2024-05-28T22:23:17,119 ############################ 2024-05-28T22:23:17,119 # Package would be ignored # 2024-05-28T22:23:17,120 ############################ 2024-05-28T22:23:17,120 Python recognizes 'SigProfilerAssignment.data.Reference_Signatures.rn6' as an importable package[^1], 2024-05-28T22:23:17,121 but it is absent from setuptools' `packages` configuration. 2024-05-28T22:23:17,122 This leads to an ambiguous overall configuration. If you want to distribute this 2024-05-28T22:23:17,122 package, please make sure that 'SigProfilerAssignment.data.Reference_Signatures.rn6' is explicitly added 2024-05-28T22:23:17,123 to the `packages` configuration field. 2024-05-28T22:23:17,124 Alternatively, you can also rely on setuptools' discovery methods 2024-05-28T22:23:17,125 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-05-28T22:23:17,125 instead of `find_packages(...)`/`find:`). 2024-05-28T22:23:17,126 You can read more about "package discovery" on setuptools documentation page: 2024-05-28T22:23:17,127 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-05-28T22:23:17,128 If you don't want 'SigProfilerAssignment.data.Reference_Signatures.rn6' to be distributed and are 2024-05-28T22:23:17,129 already explicitly excluding 'SigProfilerAssignment.data.Reference_Signatures.rn6' via 2024-05-28T22:23:17,129 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-05-28T22:23:17,130 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-05-28T22:23:17,131 combination with a more fine grained `package-data` configuration. 2024-05-28T22:23:17,132 You can read more about "package data files" on setuptools documentation page: 2024-05-28T22:23:17,134 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-05-28T22:23:17,135 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-05-28T22:23:17,135 even if it does not contain any `.py` files. 2024-05-28T22:23:17,136 On the other hand, currently there is no concept of package data 2024-05-28T22:23:17,136 directory, all directories are treated like packages. 2024-05-28T22:23:17,137 ******************************************************************************** 2024-05-28T22:23:17,138 !! 2024-05-28T22:23:17,138 check.warn(importable) 2024-05-28T22:23:17,139 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'SigProfilerAssignment.data.tests.cnv_input' is absent from the `packages` configuration. 2024-05-28T22:23:17,139 !! 2024-05-28T22:23:17,140 ******************************************************************************** 2024-05-28T22:23:17,141 ############################ 2024-05-28T22:23:17,141 # Package would be ignored # 2024-05-28T22:23:17,142 ############################ 2024-05-28T22:23:17,142 Python recognizes 'SigProfilerAssignment.data.tests.cnv_input' as an importable package[^1], 2024-05-28T22:23:17,142 but it is absent from setuptools' `packages` configuration. 2024-05-28T22:23:17,143 This leads to an ambiguous overall configuration. If you want to distribute this 2024-05-28T22:23:17,144 package, please make sure that 'SigProfilerAssignment.data.tests.cnv_input' is explicitly added 2024-05-28T22:23:17,144 to the `packages` configuration field. 2024-05-28T22:23:17,145 Alternatively, you can also rely on setuptools' discovery methods 2024-05-28T22:23:17,145 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-05-28T22:23:17,146 instead of `find_packages(...)`/`find:`). 2024-05-28T22:23:17,147 You can read more about "package discovery" on setuptools documentation page: 2024-05-28T22:23:17,148 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-05-28T22:23:17,149 If you don't want 'SigProfilerAssignment.data.tests.cnv_input' to be distributed and are 2024-05-28T22:23:17,150 already explicitly excluding 'SigProfilerAssignment.data.tests.cnv_input' via 2024-05-28T22:23:17,150 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-05-28T22:23:17,151 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-05-28T22:23:17,151 combination with a more fine grained `package-data` configuration. 2024-05-28T22:23:17,152 You can read more about "package data files" on setuptools documentation page: 2024-05-28T22:23:17,154 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-05-28T22:23:17,155 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-05-28T22:23:17,156 even if it does not contain any `.py` files. 2024-05-28T22:23:17,156 On the other hand, currently there is no concept of package data 2024-05-28T22:23:17,157 directory, all directories are treated like packages. 2024-05-28T22:23:17,157 ******************************************************************************** 2024-05-28T22:23:17,158 !! 2024-05-28T22:23:17,159 check.warn(importable) 2024-05-28T22:23:17,159 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'SigProfilerAssignment.data.tests.txt_input' is absent from the `packages` configuration. 2024-05-28T22:23:17,160 !! 2024-05-28T22:23:17,161 ******************************************************************************** 2024-05-28T22:23:17,162 ############################ 2024-05-28T22:23:17,162 # Package would be ignored # 2024-05-28T22:23:17,163 ############################ 2024-05-28T22:23:17,163 Python recognizes 'SigProfilerAssignment.data.tests.txt_input' as an importable package[^1], 2024-05-28T22:23:17,164 but it is absent from setuptools' `packages` configuration. 2024-05-28T22:23:17,164 This leads to an ambiguous overall configuration. If you want to distribute this 2024-05-28T22:23:17,165 package, please make sure that 'SigProfilerAssignment.data.tests.txt_input' is explicitly added 2024-05-28T22:23:17,165 to the `packages` configuration field. 2024-05-28T22:23:17,166 Alternatively, you can also rely on setuptools' discovery methods 2024-05-28T22:23:17,167 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-05-28T22:23:17,167 instead of `find_packages(...)`/`find:`). 2024-05-28T22:23:17,168 You can read more about "package discovery" on setuptools documentation page: 2024-05-28T22:23:17,169 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-05-28T22:23:17,170 If you don't want 'SigProfilerAssignment.data.tests.txt_input' to be distributed and are 2024-05-28T22:23:17,170 already explicitly excluding 'SigProfilerAssignment.data.tests.txt_input' via 2024-05-28T22:23:17,170 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-05-28T22:23:17,171 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-05-28T22:23:17,171 combination with a more fine grained `package-data` configuration. 2024-05-28T22:23:17,172 You can read more about "package data files" on setuptools documentation page: 2024-05-28T22:23:17,173 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-05-28T22:23:17,175 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-05-28T22:23:17,175 even if it does not contain any `.py` files. 2024-05-28T22:23:17,176 On the other hand, currently there is no concept of package data 2024-05-28T22:23:17,176 directory, all directories are treated like packages. 2024-05-28T22:23:17,177 ******************************************************************************** 2024-05-28T22:23:17,178 !! 2024-05-28T22:23:17,178 check.warn(importable) 2024-05-28T22:23:17,179 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'SigProfilerAssignment.data.tests.vcf_input' is absent from the `packages` configuration. 2024-05-28T22:23:17,179 !! 2024-05-28T22:23:17,180 ******************************************************************************** 2024-05-28T22:23:17,181 ############################ 2024-05-28T22:23:17,182 # Package would be ignored # 2024-05-28T22:23:17,182 ############################ 2024-05-28T22:23:17,183 Python recognizes 'SigProfilerAssignment.data.tests.vcf_input' as an importable package[^1], 2024-05-28T22:23:17,183 but it is absent from setuptools' `packages` configuration. 2024-05-28T22:23:17,185 This leads to an ambiguous overall configuration. If you want to distribute this 2024-05-28T22:23:17,185 package, please make sure that 'SigProfilerAssignment.data.tests.vcf_input' is explicitly added 2024-05-28T22:23:17,186 to the `packages` configuration field. 2024-05-28T22:23:17,187 Alternatively, you can also rely on setuptools' discovery methods 2024-05-28T22:23:17,187 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-05-28T22:23:17,188 instead of `find_packages(...)`/`find:`). 2024-05-28T22:23:17,189 You can read more about "package discovery" on setuptools documentation page: 2024-05-28T22:23:17,190 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-05-28T22:23:17,191 If you don't want 'SigProfilerAssignment.data.tests.vcf_input' to be distributed and are 2024-05-28T22:23:17,192 already explicitly excluding 'SigProfilerAssignment.data.tests.vcf_input' via 2024-05-28T22:23:17,192 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-05-28T22:23:17,193 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-05-28T22:23:17,193 combination with a more fine grained `package-data` configuration. 2024-05-28T22:23:17,194 You can read more about "package data files" on setuptools documentation page: 2024-05-28T22:23:17,195 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-05-28T22:23:17,196 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-05-28T22:23:17,197 even if it does not contain any `.py` files. 2024-05-28T22:23:17,197 On the other hand, currently there is no concept of package data 2024-05-28T22:23:17,198 directory, all directories are treated like packages. 2024-05-28T22:23:17,198 ******************************************************************************** 2024-05-28T22:23:17,199 !! 2024-05-28T22:23:17,199 check.warn(importable) 2024-05-28T22:23:17,200 creating build/lib/SigProfilerAssignment/DecompositionPlots 2024-05-28T22:23:17,200 copying SigProfilerAssignment/DecompositionPlots/.DS_Store -> build/lib/SigProfilerAssignment/DecompositionPlots 2024-05-28T22:23:17,201 copying SigProfilerAssignment/DecompositionPlots/PlotDecomposition.py -> build/lib/SigProfilerAssignment/DecompositionPlots 2024-05-28T22:23:17,201 copying SigProfilerAssignment/DecompositionPlots/PlotDecomposition_CNV48.py -> build/lib/SigProfilerAssignment/DecompositionPlots 2024-05-28T22:23:17,202 copying SigProfilerAssignment/DecompositionPlots/PlotDecomposition_DBS78.py -> build/lib/SigProfilerAssignment/DecompositionPlots 2024-05-28T22:23:17,202 copying SigProfilerAssignment/DecompositionPlots/PlotDecomposition_ID83.py -> build/lib/SigProfilerAssignment/DecompositionPlots 2024-05-28T22:23:17,203 copying SigProfilerAssignment/DecompositionPlots/PlotDecomposition_SBS1536.py -> build/lib/SigProfilerAssignment/DecompositionPlots 2024-05-28T22:23:17,203 copying SigProfilerAssignment/DecompositionPlots/PlotDecomposition_SBS288.py -> build/lib/SigProfilerAssignment/DecompositionPlots 2024-05-28T22:23:17,204 copying SigProfilerAssignment/DecompositionPlots/PlotDecomposition_SBS96.py -> build/lib/SigProfilerAssignment/DecompositionPlots 2024-05-28T22:23:17,204 copying SigProfilerAssignment/DecompositionPlots/PlotDecomposition_SV32.py -> build/lib/SigProfilerAssignment/DecompositionPlots 2024-05-28T22:23:17,205 copying SigProfilerAssignment/DecompositionPlots/SigProfilerPlottingMatrix.py -> build/lib/SigProfilerAssignment/DecompositionPlots 2024-05-28T22:23:17,205 creating build/lib/SigProfilerAssignment/DecompositionPlots/ReferenceFiles 2024-05-28T22:23:17,206 copying SigProfilerAssignment/DecompositionPlots/ReferenceFiles/Accolade_fermante.png -> build/lib/SigProfilerAssignment/DecompositionPlots/ReferenceFiles 2024-05-28T22:23:17,206 copying SigProfilerAssignment/DecompositionPlots/ReferenceFiles/CREDIT.md -> build/lib/SigProfilerAssignment/DecompositionPlots/ReferenceFiles 2024-05-28T22:23:17,207 creating build/lib/SigProfilerAssignment/DecompositionPlots/ReferenceFiles/Fonts 2024-05-28T22:23:17,207 copying SigProfilerAssignment/DecompositionPlots/ReferenceFiles/Fonts/Arial Bold.ttf -> build/lib/SigProfilerAssignment/DecompositionPlots/ReferenceFiles/Fonts 2024-05-28T22:23:17,208 creating build/lib/SigProfilerAssignment/controllers 2024-05-28T22:23:17,209 copying SigProfilerAssignment/controllers/cli_controller.py -> build/lib/SigProfilerAssignment/controllers 2024-05-28T22:23:17,209 creating build/lib/SigProfilerAssignment/data 2024-05-28T22:23:17,210 copying SigProfilerAssignment/data/21_breast_WGS_substitutions.mat -> build/lib/SigProfilerAssignment/data 2024-05-28T22:23:17,210 copying SigProfilerAssignment/data/CNV_features.tsv -> build/lib/SigProfilerAssignment/data 2024-05-28T22:23:17,210 copying SigProfilerAssignment/data/CNV_signatures.txt -> build/lib/SigProfilerAssignment/data 2024-05-28T22:23:17,211 copying SigProfilerAssignment/data/CN_classes_dictionary.txt -> build/lib/SigProfilerAssignment/data 2024-05-28T22:23:17,211 copying SigProfilerAssignment/data/DBS_signatures_genome_builds.xlsx -> build/lib/SigProfilerAssignment/data 2024-05-28T22:23:17,212 copying SigProfilerAssignment/data/SBS_signatures_genome_builds.xlsx -> build/lib/SigProfilerAssignment/data 2024-05-28T22:23:17,212 copying SigProfilerAssignment/data/Samples.txt -> build/lib/SigProfilerAssignment/data 2024-05-28T22:23:17,213 copying SigProfilerAssignment/data/csvexample.csv -> build/lib/SigProfilerAssignment/data 2024-05-28T22:23:17,213 copying SigProfilerAssignment/data/sigProfiler_DBS_signatures.csv -> build/lib/SigProfilerAssignment/data 2024-05-28T22:23:17,214 copying SigProfilerAssignment/data/sigProfiler_ID_signatures.csv -> build/lib/SigProfilerAssignment/data 2024-05-28T22:23:17,214 copying SigProfilerAssignment/data/sigProfiler_SBS_signatures_2018_03_28.csv -> build/lib/SigProfilerAssignment/data 2024-05-28T22:23:17,215 creating build/lib/SigProfilerAssignment/data/Reference_Signatures 2024-05-28T22:23:17,216 creating build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2024-05-28T22:23:17,216 copying SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v1_SBS_GRCh37.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2024-05-28T22:23:17,217 copying SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v1_SBS_GRCh37_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2024-05-28T22:23:17,217 copying SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v2_SBS_GRCh37.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2024-05-28T22:23:17,217 copying SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v2_SBS_GRCh37_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2024-05-28T22:23:17,218 copying SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.1_DBS_GRCh37.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2024-05-28T22:23:17,218 copying SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.1_DBS_GRCh37_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2024-05-28T22:23:17,219 copying SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.1_ID_GRCh37.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2024-05-28T22:23:17,219 copying SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.1_SBS_GRCh37.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2024-05-28T22:23:17,220 copying SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.1_SBS_GRCh37_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2024-05-28T22:23:17,220 copying SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.2_DBS_GRCh37.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2024-05-28T22:23:17,221 copying SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.2_DBS_GRCh37_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2024-05-28T22:23:17,221 copying SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.2_ID_GRCh37.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2024-05-28T22:23:17,222 copying SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.2_SBS288_GRCh37.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2024-05-28T22:23:17,222 copying SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.2_SBS_GRCh37.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2024-05-28T22:23:17,223 copying SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.2_SBS_GRCh37_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2024-05-28T22:23:17,224 copying SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.3_CN_GRCh37.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2024-05-28T22:23:17,224 copying SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.3_DBS_GRCh37.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2024-05-28T22:23:17,225 copying SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.3_DBS_GRCh37_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2024-05-28T22:23:17,225 copying SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.3_ID_GRCh37.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2024-05-28T22:23:17,226 copying SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.3_SBS_GRCh37.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2024-05-28T22:23:17,226 copying SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.3_SBS_GRCh37_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2024-05-28T22:23:17,227 copying SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.4_CN_GRCh37.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2024-05-28T22:23:17,227 copying SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.4_DBS_GRCh37.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2024-05-28T22:23:17,228 copying SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.4_DBS_GRCh37_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2024-05-28T22:23:17,228 copying SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.4_ID_GRCh37.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2024-05-28T22:23:17,229 copying SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.4_SBS_GRCh37.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2024-05-28T22:23:17,229 copying SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.4_SBS_GRCh37_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2024-05-28T22:23:17,230 copying SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3_DBS_GRCh37.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2024-05-28T22:23:17,230 copying SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3_DBS_GRCh37_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2024-05-28T22:23:17,231 copying SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3_ID_GRCh37.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2024-05-28T22:23:17,231 copying SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3_SBS_GRCh37.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2024-05-28T22:23:17,234 copying SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3_SBS_GRCh37_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2024-05-28T22:23:17,239 creating build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2024-05-28T22:23:17,240 copying SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v1_SBS_GRCh38.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2024-05-28T22:23:17,244 copying SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v1_SBS_GRCh38_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2024-05-28T22:23:17,247 copying SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v2_SBS_GRCh38.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2024-05-28T22:23:17,250 copying SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v2_SBS_GRCh38_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2024-05-28T22:23:17,254 copying SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.1_DBS_GRCh38.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2024-05-28T22:23:17,256 copying SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.1_DBS_GRCh38_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2024-05-28T22:23:17,259 copying SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.1_SBS_GRCh38.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2024-05-28T22:23:17,263 copying SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.1_SBS_GRCh38_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2024-05-28T22:23:17,268 copying SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.2_DBS_GRCh38.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2024-05-28T22:23:17,270 copying SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.2_DBS_GRCh38_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2024-05-28T22:23:17,273 copying SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.2_SBS_GRCh38.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2024-05-28T22:23:17,278 copying SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.2_SBS_GRCh38_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2024-05-28T22:23:17,283 copying SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.3_DBS_GRCh38.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2024-05-28T22:23:17,286 copying SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.3_DBS_GRCh38_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2024-05-28T22:23:17,288 copying SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.3_SBS_GRCh38.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2024-05-28T22:23:17,293 copying SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.3_SBS_GRCh38_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2024-05-28T22:23:17,298 copying SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.4_DBS_GRCh38.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2024-05-28T22:23:17,301 copying SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.4_DBS_GRCh38_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2024-05-28T22:23:17,305 copying SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.4_SBS_GRCh38.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2024-05-28T22:23:17,309 copying SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.4_SBS_GRCh38_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2024-05-28T22:23:17,314 copying SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.4_SV_GRCh38.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2024-05-28T22:23:17,317 copying SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3_DBS_GRCh38.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2024-05-28T22:23:17,320 copying SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3_DBS_GRCh38_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2024-05-28T22:23:17,323 copying SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3_SBS_GRCh38.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2024-05-28T22:23:17,328 copying SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3_SBS_GRCh38_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2024-05-28T22:23:17,332 creating build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10 2024-05-28T22:23:17,333 copying SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v1_SBS_mm10.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10 2024-05-28T22:23:17,336 copying SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v1_SBS_mm10_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10 2024-05-28T22:23:17,339 copying SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v2_SBS_mm10.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10 2024-05-28T22:23:17,342 copying SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v2_SBS_mm10_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10 2024-05-28T22:23:17,345 copying SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.1_DBS_mm10.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10 2024-05-28T22:23:17,348 copying SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.1_DBS_mm10_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10 2024-05-28T22:23:17,351 copying SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.1_SBS_mm10.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10 2024-05-28T22:23:17,355 copying SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.1_SBS_mm10_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10 2024-05-28T22:23:17,359 copying SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.2_DBS_mm10.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10 2024-05-28T22:23:17,362 copying SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.2_DBS_mm10_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10 2024-05-28T22:23:17,365 copying SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.2_SBS_mm10.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10 2024-05-28T22:23:17,370 copying SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.2_SBS_mm10_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10 2024-05-28T22:23:17,375 copying SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.3_DBS_mm10.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10 2024-05-28T22:23:17,378 copying SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.3_DBS_mm10_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10 2024-05-28T22:23:17,381 copying SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.3_SBS_mm10.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10 2024-05-28T22:23:17,386 copying SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.3_SBS_mm10_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10 2024-05-28T22:23:17,391 copying SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.4_DBS_mm10.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10 2024-05-28T22:23:17,394 copying SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.4_DBS_mm10_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10 2024-05-28T22:23:17,397 copying SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.4_SBS_mm10.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10 2024-05-28T22:23:17,402 copying SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.4_SBS_mm10_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10 2024-05-28T22:23:17,407 copying SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3_DBS_mm10.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10 2024-05-28T22:23:17,410 copying SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3_DBS_mm10_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10 2024-05-28T22:23:17,413 copying SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3_SBS_mm10.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10 2024-05-28T22:23:17,417 copying SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3_SBS_mm10_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10 2024-05-28T22:23:17,422 creating build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9 2024-05-28T22:23:17,422 copying SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v1_SBS_mm9.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9 2024-05-28T22:23:17,425 copying SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v1_SBS_mm9_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9 2024-05-28T22:23:17,428 copying SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v2_SBS_mm9.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9 2024-05-28T22:23:17,432 copying SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v2_SBS_mm9_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9 2024-05-28T22:23:17,435 copying SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.1_DBS_mm9.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9 2024-05-28T22:23:17,438 copying SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.1_DBS_mm9_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9 2024-05-28T22:23:17,440 copying SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.1_SBS_mm9.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9 2024-05-28T22:23:17,445 copying SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.1_SBS_mm9_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9 2024-05-28T22:23:17,449 copying SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.2_DBS_mm9.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9 2024-05-28T22:23:17,452 copying SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.2_DBS_mm9_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9 2024-05-28T22:23:17,455 copying SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.2_SBS_mm9.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9 2024-05-28T22:23:17,459 copying SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.2_SBS_mm9_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9 2024-05-28T22:23:17,464 copying SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.3_DBS_mm9.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9 2024-05-28T22:23:17,467 copying SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.3_DBS_mm9_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9 2024-05-28T22:23:17,469 copying SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.3_SBS_mm9.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9 2024-05-28T22:23:17,474 copying SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.3_SBS_mm9_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9 2024-05-28T22:23:17,479 copying SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.4_DBS_mm9.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9 2024-05-28T22:23:17,482 copying SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.4_DBS_mm9_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9 2024-05-28T22:23:17,485 copying SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.4_SBS_mm9.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9 2024-05-28T22:23:17,490 copying SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.4_SBS_mm9_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9 2024-05-28T22:23:17,495 copying SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3_DBS_mm9.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9 2024-05-28T22:23:17,498 copying SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3_DBS_mm9_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9 2024-05-28T22:23:17,500 copying SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3_SBS_mm9.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9 2024-05-28T22:23:17,505 copying SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3_SBS_mm9_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9 2024-05-28T22:23:17,511 creating build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6 2024-05-28T22:23:17,512 copying SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v1_SBS_rn6.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6 2024-05-28T22:23:17,515 copying SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v1_SBS_rn6_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6 2024-05-28T22:23:17,519 copying SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v2_SBS_rn6.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6 2024-05-28T22:23:17,523 copying SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v2_SBS_rn6_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6 2024-05-28T22:23:17,526 copying SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.1_DBS_rn6.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6 2024-05-28T22:23:17,529 copying SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.1_DBS_rn6_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6 2024-05-28T22:23:17,532 copying SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.1_SBS_rn6.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6 2024-05-28T22:23:17,538 copying SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.1_SBS_rn6_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6 2024-05-28T22:23:17,544 copying SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.2_DBS_rn6.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6 2024-05-28T22:23:17,547 copying SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.2_DBS_rn6_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6 2024-05-28T22:23:17,550 copying SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.2_SBS_rn6.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6 2024-05-28T22:23:17,556 copying SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.2_SBS_rn6_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6 2024-05-28T22:23:17,561 copying SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.3_DBS_rn6.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6 2024-05-28T22:23:17,564 copying SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.3_DBS_rn6_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6 2024-05-28T22:23:17,567 copying SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.3_SBS_rn6.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6 2024-05-28T22:23:17,572 copying SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.3_SBS_rn6_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6 2024-05-28T22:23:17,577 copying SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.4_DBS_rn6.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6 2024-05-28T22:23:17,580 copying SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.4_DBS_rn6_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6 2024-05-28T22:23:17,583 copying SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.4_SBS_rn6.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6 2024-05-28T22:23:17,589 copying SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.4_SBS_rn6_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6 2024-05-28T22:23:17,594 copying SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3_DBS_rn6.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6 2024-05-28T22:23:17,597 copying SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3_DBS_rn6_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6 2024-05-28T22:23:17,600 copying SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3_SBS_rn6.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6 2024-05-28T22:23:17,604 copying SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3_SBS_rn6_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6 2024-05-28T22:23:17,608 creating build/lib/SigProfilerAssignment/data/tests 2024-05-28T22:23:17,609 creating build/lib/SigProfilerAssignment/data/tests/cnv_input 2024-05-28T22:23:17,610 copying SigProfilerAssignment/data/tests/cnv_input/all.breast.ascat.summary.sample.tsv -> build/lib/SigProfilerAssignment/data/tests/cnv_input 2024-05-28T22:23:17,618 creating build/lib/SigProfilerAssignment/data/tests/txt_input 2024-05-28T22:23:17,619 copying SigProfilerAssignment/data/tests/txt_input/CNV48_S3_Signatures.txt -> build/lib/SigProfilerAssignment/data/tests/txt_input 2024-05-28T22:23:17,621 copying SigProfilerAssignment/data/tests/txt_input/DBS78_S3_Signatures.txt -> build/lib/SigProfilerAssignment/data/tests/txt_input 2024-05-28T22:23:17,623 copying SigProfilerAssignment/data/tests/txt_input/ID83_S3_Signatures.txt -> build/lib/SigProfilerAssignment/data/tests/txt_input 2024-05-28T22:23:17,625 copying SigProfilerAssignment/data/tests/txt_input/SBS96_S3_Signatures.txt -> build/lib/SigProfilerAssignment/data/tests/txt_input 2024-05-28T22:23:17,628 copying SigProfilerAssignment/data/tests/txt_input/SV32_S3_Signatures.txt -> build/lib/SigProfilerAssignment/data/tests/txt_input 2024-05-28T22:23:17,630 copying SigProfilerAssignment/data/tests/txt_input/sample_matrix_CNV48.txt -> build/lib/SigProfilerAssignment/data/tests/txt_input 2024-05-28T22:23:17,632 copying SigProfilerAssignment/data/tests/txt_input/sample_matrix_DBS.txt -> build/lib/SigProfilerAssignment/data/tests/txt_input 2024-05-28T22:23:17,634 copying SigProfilerAssignment/data/tests/txt_input/sample_matrix_ID.txt -> build/lib/SigProfilerAssignment/data/tests/txt_input 2024-05-28T22:23:17,636 copying SigProfilerAssignment/data/tests/txt_input/sample_matrix_SBS.txt -> build/lib/SigProfilerAssignment/data/tests/txt_input 2024-05-28T22:23:17,638 copying SigProfilerAssignment/data/tests/txt_input/sample_matrix_SV32.txt -> build/lib/SigProfilerAssignment/data/tests/txt_input 2024-05-28T22:23:17,640 creating build/lib/SigProfilerAssignment/data/tests/vcf_input 2024-05-28T22:23:17,641 copying SigProfilerAssignment/data/tests/vcf_input/PD3851a.vcf -> build/lib/SigProfilerAssignment/data/tests/vcf_input 2024-05-28T22:23:17,644 copying SigProfilerAssignment/data/tests/vcf_input/PD3890a.vcf -> build/lib/SigProfilerAssignment/data/tests/vcf_input 2024-05-28T22:23:17,649 copying SigProfilerAssignment/data/tests/vcf_input/PD3904a.vcf -> build/lib/SigProfilerAssignment/data/tests/vcf_input 2024-05-28T22:23:17,653 copying SigProfilerAssignment/data/tests/vcf_input/PD3945a.vcf -> build/lib/SigProfilerAssignment/data/tests/vcf_input 2024-05-28T22:23:17,659 copying SigProfilerAssignment/data/tests/vcf_input/PD4005a.vcf -> build/lib/SigProfilerAssignment/data/tests/vcf_input 2024-05-28T22:23:17,690 /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. 2024-05-28T22:23:17,691 !! 2024-05-28T22:23:17,692 ******************************************************************************** 2024-05-28T22:23:17,693 Please avoid running ``setup.py`` directly. 2024-05-28T22:23:17,693 Instead, use pypa/build, pypa/installer or other 2024-05-28T22:23:17,694 standards-based tools. 2024-05-28T22:23:17,695 See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. 2024-05-28T22:23:17,696 ******************************************************************************** 2024-05-28T22:23:17,696 !! 2024-05-28T22:23:17,699 self.initialize_options() 2024-05-28T22:23:17,719 installing to build/bdist.linux-armv7l/wheel 2024-05-28T22:23:17,720 running install 2024-05-28T22:23:17,744 running install_lib 2024-05-28T22:23:17,769 creating build/bdist.linux-armv7l 2024-05-28T22:23:17,769 creating build/bdist.linux-armv7l/wheel 2024-05-28T22:23:17,771 creating build/bdist.linux-armv7l/wheel/SigProfilerAssignment 2024-05-28T22:23:17,772 copying build/lib/SigProfilerAssignment/decomposition.py -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment 2024-05-28T22:23:17,775 creating build/bdist.linux-armv7l/wheel/SigProfilerAssignment/controllers 2024-05-28T22:23:17,776 copying build/lib/SigProfilerAssignment/controllers/cli_controller.py -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/controllers 2024-05-28T22:23:17,779 creating build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data 2024-05-28T22:23:17,780 copying build/lib/SigProfilerAssignment/data/csvexample.csv -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data 2024-05-28T22:23:17,782 copying build/lib/SigProfilerAssignment/data/DBS_signatures_genome_builds.xlsx -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data 2024-05-28T22:23:17,786 copying build/lib/SigProfilerAssignment/data/sigProfiler_DBS_signatures.csv -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data 2024-05-28T22:23:17,788 copying build/lib/SigProfilerAssignment/data/SBS_signatures_genome_builds.xlsx -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data 2024-05-28T22:23:17,798 copying build/lib/SigProfilerAssignment/data/21_breast_WGS_substitutions.mat -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data 2024-05-28T22:23:17,799 copying build/lib/SigProfilerAssignment/data/CN_classes_dictionary.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data 2024-05-28T22:23:17,801 creating build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures 2024-05-28T22:23:17,803 creating build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm9 2024-05-28T22:23:17,804 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.1_SBS_mm9.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm9 2024-05-28T22:23:17,808 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3_DBS_mm9.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm9 2024-05-28T22:23:17,811 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3_SBS_mm9.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm9 2024-05-28T22:23:17,815 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.3_DBS_mm9_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm9 2024-05-28T22:23:17,817 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.2_DBS_mm9_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm9 2024-05-28T22:23:17,820 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.4_DBS_mm9_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm9 2024-05-28T22:23:17,822 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.1_DBS_mm9_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm9 2024-05-28T22:23:17,825 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v1_SBS_mm9.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm9 2024-05-28T22:23:17,828 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.1_DBS_mm9.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm9 2024-05-28T22:23:17,830 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.4_DBS_mm9.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm9 2024-05-28T22:23:17,834 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.4_SBS_mm9_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm9 2024-05-28T22:23:17,839 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.2_SBS_mm9_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm9 2024-05-28T22:23:17,843 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.3_DBS_mm9.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm9 2024-05-28T22:23:17,846 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.2_DBS_mm9.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm9 2024-05-28T22:23:17,848 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.3_SBS_mm9.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm9 2024-05-28T22:23:17,852 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v2_SBS_mm9.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm9 2024-05-28T22:23:17,856 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3_SBS_mm9_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm9 2024-05-28T22:23:17,860 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3_DBS_mm9_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm9 2024-05-28T22:23:17,862 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v1_SBS_mm9_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm9 2024-05-28T22:23:17,865 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.1_SBS_mm9_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm9 2024-05-28T22:23:17,870 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.2_SBS_mm9.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm9 2024-05-28T22:23:17,874 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.4_SBS_mm9.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm9 2024-05-28T22:23:17,879 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.3_SBS_mm9_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm9 2024-05-28T22:23:17,883 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v2_SBS_mm9_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm9 2024-05-28T22:23:17,887 creating build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2024-05-28T22:23:17,888 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3_DBS_GRCh37.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2024-05-28T22:23:17,891 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v2_SBS_GRCh37.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2024-05-28T22:23:17,894 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.2_SBS288_GRCh37.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2024-05-28T22:23:17,898 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.4_CN_GRCh37.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2024-05-28T22:23:17,900 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.3_DBS_GRCh37.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2024-05-28T22:23:17,903 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.3_DBS_GRCh37_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2024-05-28T22:23:17,905 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.4_SBS_GRCh37_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2024-05-28T22:23:17,910 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3_SBS_GRCh37.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2024-05-28T22:23:17,914 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.3_SBS_GRCh37.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2024-05-28T22:23:17,919 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.1_DBS_GRCh37_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2024-05-28T22:23:17,922 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.3_CN_GRCh37.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2024-05-28T22:23:17,925 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.4_ID_GRCh37.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2024-05-28T22:23:17,928 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3_DBS_GRCh37_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2024-05-28T22:23:17,930 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.4_DBS_GRCh37_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2024-05-28T22:23:17,933 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v1_SBS_GRCh37_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2024-05-28T22:23:17,936 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3_ID_GRCh37.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2024-05-28T22:23:17,939 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.1_SBS_GRCh37_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2024-05-28T22:23:17,943 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.1_ID_GRCh37.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2024-05-28T22:23:17,947 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.2_DBS_GRCh37.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2024-05-28T22:23:17,950 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3_SBS_GRCh37_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2024-05-28T22:23:17,956 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.2_SBS_GRCh37_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2024-05-28T22:23:17,964 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.1_SBS_GRCh37.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2024-05-28T22:23:17,971 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.3_ID_GRCh37.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2024-05-28T22:23:17,975 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.2_DBS_GRCh37_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2024-05-28T22:23:17,978 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.1_DBS_GRCh37.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2024-05-28T22:23:17,981 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.3_SBS_GRCh37_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2024-05-28T22:23:17,989 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.2_ID_GRCh37.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2024-05-28T22:23:17,993 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.4_SBS_GRCh37.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2024-05-28T22:23:17,998 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v1_SBS_GRCh37.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2024-05-28T22:23:18,002 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.4_DBS_GRCh37.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2024-05-28T22:23:18,006 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v2_SBS_GRCh37_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2024-05-28T22:23:18,011 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.2_SBS_GRCh37.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2024-05-28T22:23:18,019 creating build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/rn6 2024-05-28T22:23:18,020 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v2_SBS_rn6_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/rn6 2024-05-28T22:23:18,025 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v2_SBS_rn6.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/rn6 2024-05-28T22:23:18,030 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.3_DBS_rn6_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/rn6 2024-05-28T22:23:18,034 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v1_SBS_rn6_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/rn6 2024-05-28T22:23:18,038 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.2_DBS_rn6_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/rn6 2024-05-28T22:23:18,042 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.4_DBS_rn6_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/rn6 2024-05-28T22:23:18,045 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v1_SBS_rn6.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/rn6 2024-05-28T22:23:18,048 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.4_SBS_rn6.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/rn6 2024-05-28T22:23:18,057 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.1_SBS_rn6_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/rn6 2024-05-28T22:23:18,063 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.3_SBS_rn6.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/rn6 2024-05-28T22:23:18,070 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.2_SBS_rn6.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/rn6 2024-05-28T22:23:18,077 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3_DBS_rn6.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/rn6 2024-05-28T22:23:18,080 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.3_DBS_rn6.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/rn6 2024-05-28T22:23:18,083 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.2_SBS_rn6_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/rn6 2024-05-28T22:23:18,090 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.2_DBS_rn6.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/rn6 2024-05-28T22:23:18,093 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.4_SBS_rn6_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/rn6 2024-05-28T22:23:18,101 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3_SBS_rn6_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/rn6 2024-05-28T22:23:18,107 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.4_DBS_rn6.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/rn6 2024-05-28T22:23:18,111 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.3_SBS_rn6_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/rn6 2024-05-28T22:23:18,118 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3_SBS_rn6.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/rn6 2024-05-28T22:23:18,125 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.1_DBS_rn6.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/rn6 2024-05-28T22:23:18,127 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3_DBS_rn6_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/rn6 2024-05-28T22:23:18,130 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.1_SBS_rn6.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/rn6 2024-05-28T22:23:18,136 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.1_DBS_rn6_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/rn6 2024-05-28T22:23:18,140 creating build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2024-05-28T22:23:18,140 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.4_DBS_GRCh38_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2024-05-28T22:23:18,143 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v2_SBS_GRCh38.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2024-05-28T22:23:18,146 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.1_SBS_GRCh38_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2024-05-28T22:23:18,150 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.2_SBS_GRCh38.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2024-05-28T22:23:18,155 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.3_DBS_GRCh38.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2024-05-28T22:23:18,158 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3_DBS_GRCh38.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2024-05-28T22:23:18,160 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v1_SBS_GRCh38.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2024-05-28T22:23:18,163 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.3_DBS_GRCh38_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2024-05-28T22:23:18,166 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.2_DBS_GRCh38.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2024-05-28T22:23:18,168 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.1_SBS_GRCh38.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2024-05-28T22:23:18,172 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.1_DBS_GRCh38.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2024-05-28T22:23:18,175 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.2_DBS_GRCh38_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2024-05-28T22:23:18,178 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3_SBS_GRCh38.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2024-05-28T22:23:18,182 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.4_SBS_GRCh38_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2024-05-28T22:23:18,186 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.1_DBS_GRCh38_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2024-05-28T22:23:18,188 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3_DBS_GRCh38_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2024-05-28T22:23:18,191 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v2_SBS_GRCh38_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2024-05-28T22:23:18,194 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v1_SBS_GRCh38_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2024-05-28T22:23:18,197 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.4_DBS_GRCh38.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2024-05-28T22:23:18,199 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.4_SV_GRCh38.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2024-05-28T22:23:18,202 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.4_SBS_GRCh38.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2024-05-28T22:23:18,207 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.3_SBS_GRCh38.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2024-05-28T22:23:18,211 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3_SBS_GRCh38_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2024-05-28T22:23:18,215 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.2_SBS_GRCh38_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2024-05-28T22:23:18,220 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.3_SBS_GRCh38_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2024-05-28T22:23:18,226 creating build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm10 2024-05-28T22:23:18,227 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.4_DBS_mm10_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm10 2024-05-28T22:23:18,230 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.4_SBS_mm10_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm10 2024-05-28T22:23:18,234 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.4_DBS_mm10.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm10 2024-05-28T22:23:18,237 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.3_SBS_mm10_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm10 2024-05-28T22:23:18,242 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v1_SBS_mm10.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm10 2024-05-28T22:23:18,245 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.3_SBS_mm10.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm10 2024-05-28T22:23:18,251 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3_DBS_mm10_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm10 2024-05-28T22:23:18,253 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3_SBS_mm10.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm10 2024-05-28T22:23:18,259 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.3_DBS_mm10.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm10 2024-05-28T22:23:18,261 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.1_DBS_mm10_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm10 2024-05-28T22:23:18,264 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3_DBS_mm10.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm10 2024-05-28T22:23:18,267 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.2_SBS_mm10_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm10 2024-05-28T22:23:18,272 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.1_DBS_mm10.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm10 2024-05-28T22:23:18,275 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.1_SBS_mm10.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm10 2024-05-28T22:23:18,280 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v2_SBS_mm10.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm10 2024-05-28T22:23:18,283 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.2_DBS_mm10_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm10 2024-05-28T22:23:18,286 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.2_SBS_mm10.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm10 2024-05-28T22:23:18,292 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v2_SBS_mm10_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm10 2024-05-28T22:23:18,295 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.4_SBS_mm10.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm10 2024-05-28T22:23:18,301 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.3_DBS_mm10_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm10 2024-05-28T22:23:18,304 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3_SBS_mm10_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm10 2024-05-28T22:23:18,309 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.1_SBS_mm10_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm10 2024-05-28T22:23:18,314 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v1_SBS_mm10_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm10 2024-05-28T22:23:18,317 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.2_DBS_mm10.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm10 2024-05-28T22:23:18,320 copying build/lib/SigProfilerAssignment/data/sigProfiler_SBS_signatures_2018_03_28.csv -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data 2024-05-28T22:23:18,323 copying build/lib/SigProfilerAssignment/data/CNV_features.tsv -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data 2024-05-28T22:23:18,326 creating build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/tests 2024-05-28T22:23:18,327 creating build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/tests/txt_input 2024-05-28T22:23:18,328 copying build/lib/SigProfilerAssignment/data/tests/txt_input/sample_matrix_SV32.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/tests/txt_input 2024-05-28T22:23:18,330 copying build/lib/SigProfilerAssignment/data/tests/txt_input/sample_matrix_ID.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/tests/txt_input 2024-05-28T22:23:18,332 copying build/lib/SigProfilerAssignment/data/tests/txt_input/sample_matrix_CNV48.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/tests/txt_input 2024-05-28T22:23:18,335 copying build/lib/SigProfilerAssignment/data/tests/txt_input/sample_matrix_SBS.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/tests/txt_input 2024-05-28T22:23:18,336 copying build/lib/SigProfilerAssignment/data/tests/txt_input/SBS96_S3_Signatures.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/tests/txt_input 2024-05-28T22:23:18,339 copying build/lib/SigProfilerAssignment/data/tests/txt_input/ID83_S3_Signatures.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/tests/txt_input 2024-05-28T22:23:18,341 copying build/lib/SigProfilerAssignment/data/tests/txt_input/DBS78_S3_Signatures.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/tests/txt_input 2024-05-28T22:23:18,343 copying build/lib/SigProfilerAssignment/data/tests/txt_input/CNV48_S3_Signatures.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/tests/txt_input 2024-05-28T22:23:18,345 copying build/lib/SigProfilerAssignment/data/tests/txt_input/sample_matrix_DBS.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/tests/txt_input 2024-05-28T22:23:18,347 copying build/lib/SigProfilerAssignment/data/tests/txt_input/SV32_S3_Signatures.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/tests/txt_input 2024-05-28T22:23:18,349 creating build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/tests/cnv_input 2024-05-28T22:23:18,350 copying build/lib/SigProfilerAssignment/data/tests/cnv_input/all.breast.ascat.summary.sample.tsv -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/tests/cnv_input 2024-05-28T22:23:18,360 creating build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/tests/vcf_input 2024-05-28T22:23:18,361 copying build/lib/SigProfilerAssignment/data/tests/vcf_input/PD3890a.vcf -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/tests/vcf_input 2024-05-28T22:23:18,365 copying build/lib/SigProfilerAssignment/data/tests/vcf_input/PD3851a.vcf -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/tests/vcf_input 2024-05-28T22:23:18,368 copying build/lib/SigProfilerAssignment/data/tests/vcf_input/PD3945a.vcf -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/tests/vcf_input 2024-05-28T22:23:18,376 copying build/lib/SigProfilerAssignment/data/tests/vcf_input/PD4005a.vcf -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/tests/vcf_input 2024-05-28T22:23:18,381 copying build/lib/SigProfilerAssignment/data/tests/vcf_input/PD3904a.vcf -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/tests/vcf_input 2024-05-28T22:23:18,386 copying build/lib/SigProfilerAssignment/data/Samples.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data 2024-05-28T22:23:18,388 copying build/lib/SigProfilerAssignment/data/CNV_signatures.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data 2024-05-28T22:23:18,391 copying build/lib/SigProfilerAssignment/data/sigProfiler_ID_signatures.csv -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data 2024-05-28T22:23:18,393 copying build/lib/SigProfilerAssignment/Analyzer.py -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment 2024-05-28T22:23:18,396 copying build/lib/SigProfilerAssignment/__init__.py -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment 2024-05-28T22:23:18,398 creating build/bdist.linux-armv7l/wheel/SigProfilerAssignment/DecompositionPlots 2024-05-28T22:23:18,399 copying build/lib/SigProfilerAssignment/DecompositionPlots/PlotDecomposition_SBS96.py -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/DecompositionPlots 2024-05-28T22:23:18,402 copying build/lib/SigProfilerAssignment/DecompositionPlots/PlotDecomposition_DBS78.py -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/DecompositionPlots 2024-05-28T22:23:18,404 copying build/lib/SigProfilerAssignment/DecompositionPlots/PlotDecomposition_ID83.py -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/DecompositionPlots 2024-05-28T22:23:18,407 copying build/lib/SigProfilerAssignment/DecompositionPlots/.DS_Store -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/DecompositionPlots 2024-05-28T22:23:18,409 copying build/lib/SigProfilerAssignment/DecompositionPlots/SigProfilerPlottingMatrix.py -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/DecompositionPlots 2024-05-28T22:23:18,418 copying build/lib/SigProfilerAssignment/DecompositionPlots/PlotDecomposition_SBS1536.py -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/DecompositionPlots 2024-05-28T22:23:18,421 copying build/lib/SigProfilerAssignment/DecompositionPlots/PlotDecomposition_SBS288.py -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/DecompositionPlots 2024-05-28T22:23:18,423 copying build/lib/SigProfilerAssignment/DecompositionPlots/PlotDecomposition_CNV48.py -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/DecompositionPlots 2024-05-28T22:23:18,426 creating build/bdist.linux-armv7l/wheel/SigProfilerAssignment/DecompositionPlots/ReferenceFiles 2024-05-28T22:23:18,427 copying build/lib/SigProfilerAssignment/DecompositionPlots/ReferenceFiles/CREDIT.md -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/DecompositionPlots/ReferenceFiles 2024-05-28T22:23:18,430 creating build/bdist.linux-armv7l/wheel/SigProfilerAssignment/DecompositionPlots/ReferenceFiles/Fonts 2024-05-28T22:23:18,431 copying build/lib/SigProfilerAssignment/DecompositionPlots/ReferenceFiles/Fonts/Arial Bold.ttf -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/DecompositionPlots/ReferenceFiles/Fonts 2024-05-28T22:23:18,447 copying build/lib/SigProfilerAssignment/DecompositionPlots/ReferenceFiles/Accolade_fermante.png -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/DecompositionPlots/ReferenceFiles 2024-05-28T22:23:18,450 copying build/lib/SigProfilerAssignment/DecompositionPlots/PlotDecomposition.py -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/DecompositionPlots 2024-05-28T22:23:18,453 copying build/lib/SigProfilerAssignment/DecompositionPlots/PlotDecomposition_SV32.py -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/DecompositionPlots 2024-05-28T22:23:18,455 copying build/lib/SigProfilerAssignment/SigProfilerAssignment_CLI.py -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment 2024-05-28T22:23:18,457 copying build/lib/SigProfilerAssignment/decompose_subroutines.py -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment 2024-05-28T22:23:18,461 copying build/lib/SigProfilerAssignment/version.py -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment 2024-05-28T22:23:18,462 copying build/lib/SigProfilerAssignment/single_sample.py -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment 2024-05-28T22:23:18,465 running install_egg_info 2024-05-28T22:23:18,498 Copying SigProfilerAssignment.egg-info to build/bdist.linux-armv7l/wheel/SigProfilerAssignment-0.1.6-py3.11.egg-info 2024-05-28T22:23:18,512 running install_scripts 2024-05-28T22:23:18,531 creating build/bdist.linux-armv7l/wheel/SigProfilerAssignment-0.1.6.dist-info/WHEEL 2024-05-28T22:23:18,533 creating '/tmp/pip-wheel-tr86v0cf/SigProfilerAssignment-0.1.6-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2024-05-28T22:23:18,535 adding 'SigProfilerAssignment/Analyzer.py' 2024-05-28T22:23:18,537 adding 'SigProfilerAssignment/SigProfilerAssignment_CLI.py' 2024-05-28T22:23:18,538 adding 'SigProfilerAssignment/__init__.py' 2024-05-28T22:23:18,544 adding 'SigProfilerAssignment/decompose_subroutines.py' 2024-05-28T22:23:18,548 adding 'SigProfilerAssignment/decomposition.py' 2024-05-28T22:23:18,552 adding 'SigProfilerAssignment/single_sample.py' 2024-05-28T22:23:18,553 adding 'SigProfilerAssignment/version.py' 2024-05-28T22:23:18,555 adding 'SigProfilerAssignment/DecompositionPlots/.DS_Store' 2024-05-28T22:23:18,558 adding 'SigProfilerAssignment/DecompositionPlots/PlotDecomposition.py' 2024-05-28T22:23:18,561 adding 'SigProfilerAssignment/DecompositionPlots/PlotDecomposition_CNV48.py' 2024-05-28T22:23:18,563 adding 'SigProfilerAssignment/DecompositionPlots/PlotDecomposition_DBS78.py' 2024-05-28T22:23:18,565 adding 'SigProfilerAssignment/DecompositionPlots/PlotDecomposition_ID83.py' 2024-05-28T22:23:18,567 adding 'SigProfilerAssignment/DecompositionPlots/PlotDecomposition_SBS1536.py' 2024-05-28T22:23:18,570 adding 'SigProfilerAssignment/DecompositionPlots/PlotDecomposition_SBS288.py' 2024-05-28T22:23:18,572 adding 'SigProfilerAssignment/DecompositionPlots/PlotDecomposition_SBS96.py' 2024-05-28T22:23:18,574 adding 'SigProfilerAssignment/DecompositionPlots/PlotDecomposition_SV32.py' 2024-05-28T22:23:18,589 adding 'SigProfilerAssignment/DecompositionPlots/SigProfilerPlottingMatrix.py' 2024-05-28T22:23:18,593 adding 'SigProfilerAssignment/DecompositionPlots/ReferenceFiles/Accolade_fermante.png' 2024-05-28T22:23:18,594 adding 'SigProfilerAssignment/DecompositionPlots/ReferenceFiles/CREDIT.md' 2024-05-28T22:23:18,702 adding 'SigProfilerAssignment/DecompositionPlots/ReferenceFiles/Fonts/Arial Bold.ttf' 2024-05-28T22:23:18,709 adding 'SigProfilerAssignment/controllers/cli_controller.py' 2024-05-28T22:23:18,711 adding 'SigProfilerAssignment/data/21_breast_WGS_substitutions.mat' 2024-05-28T22:23:18,712 adding 'SigProfilerAssignment/data/CNV_features.tsv' 2024-05-28T22:23:18,716 adding 'SigProfilerAssignment/data/CNV_signatures.txt' 2024-05-28T22:23:18,717 adding 'SigProfilerAssignment/data/CN_classes_dictionary.txt' 2024-05-28T22:23:18,732 adding 'SigProfilerAssignment/data/DBS_signatures_genome_builds.xlsx' 2024-05-28T22:23:18,773 adding 'SigProfilerAssignment/data/SBS_signatures_genome_builds.xlsx' 2024-05-28T22:23:18,778 adding 'SigProfilerAssignment/data/Samples.txt' 2024-05-28T22:23:18,779 adding 'SigProfilerAssignment/data/csvexample.csv' 2024-05-28T22:23:18,781 adding 'SigProfilerAssignment/data/sigProfiler_DBS_signatures.csv' 2024-05-28T22:23:18,785 adding 'SigProfilerAssignment/data/sigProfiler_ID_signatures.csv' 2024-05-28T22:23:18,798 adding 'SigProfilerAssignment/data/sigProfiler_SBS_signatures_2018_03_28.csv' 2024-05-28T22:23:18,803 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v1_SBS_GRCh37.txt' 2024-05-28T22:23:18,812 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v1_SBS_GRCh37_exome.txt' 2024-05-28T22:23:18,820 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v2_SBS_GRCh37.txt' 2024-05-28T22:23:18,833 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v2_SBS_GRCh37_exome.txt' 2024-05-28T22:23:18,836 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.1_DBS_GRCh37.txt' 2024-05-28T22:23:18,840 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.1_DBS_GRCh37_exome.txt' 2024-05-28T22:23:18,846 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.1_ID_GRCh37.txt' 2024-05-28T22:23:18,879 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.1_SBS_GRCh37.txt' 2024-05-28T22:23:18,914 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.1_SBS_GRCh37_exome.txt' 2024-05-28T22:23:18,918 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.2_DBS_GRCh37.txt' 2024-05-28T22:23:18,922 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.2_DBS_GRCh37_exome.txt' 2024-05-28T22:23:18,927 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.2_ID_GRCh37.txt' 2024-05-28T22:23:18,949 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.2_SBS288_GRCh37.txt' 2024-05-28T22:23:18,986 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.2_SBS_GRCh37.txt' 2024-05-28T22:23:19,024 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.2_SBS_GRCh37_exome.txt' 2024-05-28T22:23:19,028 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.3_CN_GRCh37.txt' 2024-05-28T22:23:19,032 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.3_DBS_GRCh37.txt' 2024-05-28T22:23:19,035 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.3_DBS_GRCh37_exome.txt' 2024-05-28T22:23:19,041 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.3_ID_GRCh37.txt' 2024-05-28T22:23:19,078 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.3_SBS_GRCh37.txt' 2024-05-28T22:23:19,118 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.3_SBS_GRCh37_exome.txt' 2024-05-28T22:23:19,122 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.4_CN_GRCh37.txt' 2024-05-28T22:23:19,126 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.4_DBS_GRCh37.txt' 2024-05-28T22:23:19,133 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.4_DBS_GRCh37_exome.txt' 2024-05-28T22:23:19,137 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.4_ID_GRCh37.txt' 2024-05-28T22:23:19,158 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.4_SBS_GRCh37.txt' 2024-05-28T22:23:19,201 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.4_SBS_GRCh37_exome.txt' 2024-05-28T22:23:19,206 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3_DBS_GRCh37.txt' 2024-05-28T22:23:19,209 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3_DBS_GRCh37_exome.txt' 2024-05-28T22:23:19,215 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3_ID_GRCh37.txt' 2024-05-28T22:23:19,246 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3_SBS_GRCh37.txt' 2024-05-28T22:23:19,278 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3_SBS_GRCh37_exome.txt' 2024-05-28T22:23:19,288 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v1_SBS_GRCh38.txt' 2024-05-28T22:23:19,297 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v1_SBS_GRCh38_exome.txt' 2024-05-28T22:23:19,309 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v2_SBS_GRCh38.txt' 2024-05-28T22:23:19,321 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v2_SBS_GRCh38_exome.txt' 2024-05-28T22:23:19,325 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.1_DBS_GRCh38.txt' 2024-05-28T22:23:19,329 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.1_DBS_GRCh38_exome.txt' 2024-05-28T22:23:19,363 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.1_SBS_GRCh38.txt' 2024-05-28T22:23:19,397 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.1_SBS_GRCh38_exome.txt' 2024-05-28T22:23:19,401 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.2_DBS_GRCh38.txt' 2024-05-28T22:23:19,405 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.2_DBS_GRCh38_exome.txt' 2024-05-28T22:23:19,442 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.2_SBS_GRCh38.txt' 2024-05-28T22:23:19,479 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.2_SBS_GRCh38_exome.txt' 2024-05-28T22:23:19,484 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.3_DBS_GRCh38.txt' 2024-05-28T22:23:19,487 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.3_DBS_GRCh38_exome.txt' 2024-05-28T22:23:19,525 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.3_SBS_GRCh38.txt' 2024-05-28T22:23:19,563 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.3_SBS_GRCh38_exome.txt' 2024-05-28T22:23:19,571 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.4_DBS_GRCh38.txt' 2024-05-28T22:23:19,577 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.4_DBS_GRCh38_exome.txt' 2024-05-28T22:23:19,622 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.4_SBS_GRCh38.txt' 2024-05-28T22:23:19,664 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.4_SBS_GRCh38_exome.txt' 2024-05-28T22:23:19,667 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.4_SV_GRCh38.txt' 2024-05-28T22:23:19,670 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3_DBS_GRCh38.txt' 2024-05-28T22:23:19,674 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3_DBS_GRCh38_exome.txt' 2024-05-28T22:23:19,705 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3_SBS_GRCh38.txt' 2024-05-28T22:23:19,738 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3_SBS_GRCh38_exome.txt' 2024-05-28T22:23:19,748 adding 'SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v1_SBS_mm10.txt' 2024-05-28T22:23:19,757 adding 'SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v1_SBS_mm10_exome.txt' 2024-05-28T22:23:19,769 adding 'SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v2_SBS_mm10.txt' 2024-05-28T22:23:19,781 adding 'SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v2_SBS_mm10_exome.txt' 2024-05-28T22:23:19,785 adding 'SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.1_DBS_mm10.txt' 2024-05-28T22:23:19,788 adding 'SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.1_DBS_mm10_exome.txt' 2024-05-28T22:23:19,822 adding 'SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.1_SBS_mm10.txt' 2024-05-28T22:23:19,857 adding 'SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.1_SBS_mm10_exome.txt' 2024-05-28T22:23:19,861 adding 'SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.2_DBS_mm10.txt' 2024-05-28T22:23:19,864 adding 'SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.2_DBS_mm10_exome.txt' 2024-05-28T22:23:19,901 adding 'SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.2_SBS_mm10.txt' 2024-05-28T22:23:19,939 adding 'SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.2_SBS_mm10_exome.txt' 2024-05-28T22:23:19,943 adding 'SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.3_DBS_mm10.txt' 2024-05-28T22:23:19,946 adding 'SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.3_DBS_mm10_exome.txt' 2024-05-28T22:23:19,983 adding 'SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.3_SBS_mm10.txt' 2024-05-28T22:23:20,022 adding 'SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.3_SBS_mm10_exome.txt' 2024-05-28T22:23:20,029 adding 'SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.4_DBS_mm10.txt' 2024-05-28T22:23:20,036 adding 'SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.4_DBS_mm10_exome.txt' 2024-05-28T22:23:20,080 adding 'SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.4_SBS_mm10.txt' 2024-05-28T22:23:20,123 adding 'SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.4_SBS_mm10_exome.txt' 2024-05-28T22:23:20,127 adding 'SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3_DBS_mm10.txt' 2024-05-28T22:23:20,130 adding 'SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3_DBS_mm10_exome.txt' 2024-05-28T22:23:20,161 adding 'SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3_SBS_mm10.txt' 2024-05-28T22:23:20,194 adding 'SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3_SBS_mm10_exome.txt' 2024-05-28T22:23:20,203 adding 'SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v1_SBS_mm9.txt' 2024-05-28T22:23:20,212 adding 'SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v1_SBS_mm9_exome.txt' 2024-05-28T22:23:20,224 adding 'SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v2_SBS_mm9.txt' 2024-05-28T22:23:20,236 adding 'SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v2_SBS_mm9_exome.txt' 2024-05-28T22:23:20,240 adding 'SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.1_DBS_mm9.txt' 2024-05-28T22:23:20,244 adding 'SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.1_DBS_mm9_exome.txt' 2024-05-28T22:23:20,278 adding 'SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.1_SBS_mm9.txt' 2024-05-28T22:23:20,314 adding 'SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.1_SBS_mm9_exome.txt' 2024-05-28T22:23:20,319 adding 'SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.2_DBS_mm9.txt' 2024-05-28T22:23:20,323 adding 'SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.2_DBS_mm9_exome.txt' 2024-05-28T22:23:20,361 adding 'SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.2_SBS_mm9.txt' 2024-05-28T22:23:20,399 adding 'SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.2_SBS_mm9_exome.txt' 2024-05-28T22:23:20,404 adding 'SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.3_DBS_mm9.txt' 2024-05-28T22:23:20,407 adding 'SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.3_DBS_mm9_exome.txt' 2024-05-28T22:23:20,445 adding 'SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.3_SBS_mm9.txt' 2024-05-28T22:23:20,483 adding 'SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.3_SBS_mm9_exome.txt' 2024-05-28T22:23:20,490 adding 'SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.4_DBS_mm9.txt' 2024-05-28T22:23:20,496 adding 'SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.4_DBS_mm9_exome.txt' 2024-05-28T22:23:20,541 adding 'SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.4_SBS_mm9.txt' 2024-05-28T22:23:20,584 adding 'SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.4_SBS_mm9_exome.txt' 2024-05-28T22:23:20,588 adding 'SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3_DBS_mm9.txt' 2024-05-28T22:23:20,591 adding 'SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3_DBS_mm9_exome.txt' 2024-05-28T22:23:20,622 adding 'SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3_SBS_mm9.txt' 2024-05-28T22:23:20,654 adding 'SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3_SBS_mm9_exome.txt' 2024-05-28T22:23:20,664 adding 'SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v1_SBS_rn6.txt' 2024-05-28T22:23:20,673 adding 'SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v1_SBS_rn6_exome.txt' 2024-05-28T22:23:20,685 adding 'SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v2_SBS_rn6.txt' 2024-05-28T22:23:20,697 adding 'SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v2_SBS_rn6_exome.txt' 2024-05-28T22:23:20,701 adding 'SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.1_DBS_rn6.txt' 2024-05-28T22:23:20,704 adding 'SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.1_DBS_rn6_exome.txt' 2024-05-28T22:23:20,738 adding 'SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.1_SBS_rn6.txt' 2024-05-28T22:23:20,772 adding 'SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.1_SBS_rn6_exome.txt' 2024-05-28T22:23:20,776 adding 'SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.2_DBS_rn6.txt' 2024-05-28T22:23:20,780 adding 'SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.2_DBS_rn6_exome.txt' 2024-05-28T22:23:20,817 adding 'SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.2_SBS_rn6.txt' 2024-05-28T22:23:20,854 adding 'SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.2_SBS_rn6_exome.txt' 2024-05-28T22:23:20,858 adding 'SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.3_DBS_rn6.txt' 2024-05-28T22:23:20,862 adding 'SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.3_DBS_rn6_exome.txt' 2024-05-28T22:23:20,899 adding 'SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.3_SBS_rn6.txt' 2024-05-28T22:23:20,937 adding 'SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.3_SBS_rn6_exome.txt' 2024-05-28T22:23:20,945 adding 'SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.4_DBS_rn6.txt' 2024-05-28T22:23:20,951 adding 'SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.4_DBS_rn6_exome.txt' 2024-05-28T22:23:20,995 adding 'SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.4_SBS_rn6.txt' 2024-05-28T22:23:21,038 adding 'SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.4_SBS_rn6_exome.txt' 2024-05-28T22:23:21,042 adding 'SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3_DBS_rn6.txt' 2024-05-28T22:23:21,045 adding 'SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3_DBS_rn6_exome.txt' 2024-05-28T22:23:21,077 adding 'SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3_SBS_rn6.txt' 2024-05-28T22:23:21,109 adding 'SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3_SBS_rn6_exome.txt' 2024-05-28T22:23:21,174 adding 'SigProfilerAssignment/data/tests/cnv_input/all.breast.ascat.summary.sample.tsv' 2024-05-28T22:23:21,179 adding 'SigProfilerAssignment/data/tests/txt_input/CNV48_S3_Signatures.txt' 2024-05-28T22:23:21,180 adding 'SigProfilerAssignment/data/tests/txt_input/DBS78_S3_Signatures.txt' 2024-05-28T22:23:21,182 adding 'SigProfilerAssignment/data/tests/txt_input/ID83_S3_Signatures.txt' 2024-05-28T22:23:21,184 adding 'SigProfilerAssignment/data/tests/txt_input/SBS96_S3_Signatures.txt' 2024-05-28T22:23:21,186 adding 'SigProfilerAssignment/data/tests/txt_input/SV32_S3_Signatures.txt' 2024-05-28T22:23:21,188 adding 'SigProfilerAssignment/data/tests/txt_input/sample_matrix_CNV48.txt' 2024-05-28T22:23:21,190 adding 'SigProfilerAssignment/data/tests/txt_input/sample_matrix_DBS.txt' 2024-05-28T22:23:21,191 adding 'SigProfilerAssignment/data/tests/txt_input/sample_matrix_ID.txt' 2024-05-28T22:23:21,192 adding 'SigProfilerAssignment/data/tests/txt_input/sample_matrix_SBS.txt' 2024-05-28T22:23:21,193 adding 'SigProfilerAssignment/data/tests/txt_input/sample_matrix_SV32.txt' 2024-05-28T22:23:21,200 adding 'SigProfilerAssignment/data/tests/vcf_input/PD3851a.vcf' 2024-05-28T22:23:21,220 adding 'SigProfilerAssignment/data/tests/vcf_input/PD3890a.vcf' 2024-05-28T22:23:21,238 adding 'SigProfilerAssignment/data/tests/vcf_input/PD3904a.vcf' 2024-05-28T22:23:21,271 adding 'SigProfilerAssignment/data/tests/vcf_input/PD3945a.vcf' 2024-05-28T22:23:21,292 adding 'SigProfilerAssignment/data/tests/vcf_input/PD4005a.vcf' 2024-05-28T22:23:21,295 adding 'SigProfilerAssignment-0.1.6.dist-info/LICENSE.txt' 2024-05-28T22:23:21,296 adding 'SigProfilerAssignment-0.1.6.dist-info/METADATA' 2024-05-28T22:23:21,297 adding 'SigProfilerAssignment-0.1.6.dist-info/WHEEL' 2024-05-28T22:23:21,298 adding 'SigProfilerAssignment-0.1.6.dist-info/entry_points.txt' 2024-05-28T22:23:21,299 adding 'SigProfilerAssignment-0.1.6.dist-info/top_level.txt' 2024-05-28T22:23:21,302 adding 'SigProfilerAssignment-0.1.6.dist-info/RECORD' 2024-05-28T22:23:21,365 removing build/bdist.linux-armv7l/wheel 2024-05-28T22:23:21,538 Building wheel for sigprofilerassignment (setup.py): finished with status 'done' 2024-05-28T22:23:21,597 Created wheel for sigprofilerassignment: filename=SigProfilerAssignment-0.1.6-py3-none-any.whl size=5580439 sha256=abee9803140d8dfa8fb21e24c7aaf9531a8cf74e4ec523020dcd3e93c20fc868 2024-05-28T22:23:21,598 Stored in directory: /tmp/pip-ephem-wheel-cache-y30yfns7/wheels/79/09/58/ac8963702c68013e5607498c7887057c5112af13b4bef1e008 2024-05-28T22:23:21,617 Successfully built sigprofilerassignment 2024-05-28T22:23:21,750 Removed build tracker: '/tmp/pip-build-tracker-x9p1isgv'