2024-05-29T15:35:06,966 Created temporary directory: /tmp/pip-build-tracker-5lrnn4lp 2024-05-29T15:35:06,968 Initialized build tracking at /tmp/pip-build-tracker-5lrnn4lp 2024-05-29T15:35:06,968 Created build tracker: /tmp/pip-build-tracker-5lrnn4lp 2024-05-29T15:35:06,968 Entered build tracker: /tmp/pip-build-tracker-5lrnn4lp 2024-05-29T15:35:06,969 Created temporary directory: /tmp/pip-wheel-s73dvf9_ 2024-05-29T15:35:06,972 Created temporary directory: /tmp/pip-ephem-wheel-cache-257cygpv 2024-05-29T15:35:06,997 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2024-05-29T15:35:07,000 2 location(s) to search for versions of funvip: 2024-05-29T15:35:07,000 * https://pypi.org/simple/funvip/ 2024-05-29T15:35:07,000 * https://www.piwheels.org/simple/funvip/ 2024-05-29T15:35:07,001 Fetching project page and analyzing links: https://pypi.org/simple/funvip/ 2024-05-29T15:35:07,002 Getting page https://pypi.org/simple/funvip/ 2024-05-29T15:35:07,003 Found index url https://pypi.org/simple/ 2024-05-29T15:35:07,218 Fetched page https://pypi.org/simple/funvip/ as application/vnd.pypi.simple.v1+json 2024-05-29T15:35:07,221 Skipping link: No binaries permitted for funvip: https://files.pythonhosted.org/packages/a0/b5/0d65eb17b155c93a7022978aa4521fa29d234a099409863a5b08a8e7e122/FunVIP-0.3.20-py3-none-any.whl (from https://pypi.org/simple/funvip/) (requires-python:<3.13,>3.8) 2024-05-29T15:35:07,222 Found link https://files.pythonhosted.org/packages/9b/df/34c36f5642250c040b8ef6fd2f6c11699fe52dca76ef2697e566a4101185/funvip-0.3.20.tar.gz (from https://pypi.org/simple/funvip/) (requires-python:<3.13,>3.8), version: 0.3.20 2024-05-29T15:35:07,223 Skipping link: No binaries permitted for funvip: https://files.pythonhosted.org/packages/fe/66/8319c3a6cd421da1f2a7febf8bc5042089d0f7480d31d988b9dc02b348cc/FunVIP-0.3.21-py3-none-any.whl (from https://pypi.org/simple/funvip/) (requires-python:<3.13,>3.8) 2024-05-29T15:35:07,224 Found link https://files.pythonhosted.org/packages/15/a7/1458c95468d22392f0d1f5366422c5e3325b2b73fb00ead5645ce60aefd3/funvip-0.3.21.tar.gz (from https://pypi.org/simple/funvip/) (requires-python:<3.13,>3.8), version: 0.3.21 2024-05-29T15:35:07,224 Skipping link: No binaries permitted for funvip: https://files.pythonhosted.org/packages/09/25/d7edd31afd3b5a9c32fd19315aa55fe62eeedbb6ad8efd581f1197da518e/FunVIP-0.3.22-py3-none-any.whl (from https://pypi.org/simple/funvip/) (requires-python:<3.13,>3.8) 2024-05-29T15:35:07,225 Found link https://files.pythonhosted.org/packages/77/eb/6c02451b239042d60f03c7ed10e91d4c53c4e227d2eb1d49aa8b2246a973/funvip-0.3.22.tar.gz (from https://pypi.org/simple/funvip/) (requires-python:<3.13,>3.8), version: 0.3.22 2024-05-29T15:35:07,226 Skipping link: No binaries permitted for funvip: https://files.pythonhosted.org/packages/0b/b3/c6fe7d14fc8dd1ab7b79c3824e98b5ac7b9a6cc4dc3f5af5040acc7e6982/FunVIP-0.3.22.1-py3-none-any.whl (from https://pypi.org/simple/funvip/) (requires-python:<3.13,>3.8) 2024-05-29T15:35:07,227 Found link https://files.pythonhosted.org/packages/a4/d6/c50c9574e9a58a3b2fb79c9e42d1b46e11aab893e33372d4039e8111980b/funvip-0.3.22.1.tar.gz (from https://pypi.org/simple/funvip/) (requires-python:<3.13,>3.8), version: 0.3.22.1 2024-05-29T15:35:07,228 Skipping link: No binaries permitted for funvip: https://files.pythonhosted.org/packages/92/a9/25c0f9148aad62a1e81b3d5791f16c6527a5acbfb6d07aa5e7f1b4db6f5b/FunVIP-0.3.22.2-py3-none-any.whl (from https://pypi.org/simple/funvip/) (requires-python:<3.13,>3.8) 2024-05-29T15:35:07,229 Found link https://files.pythonhosted.org/packages/16/49/7c7f5db94ce39ed308eb78ce6671abafdd86694fb3a62ff365e528b2cdd1/funvip-0.3.22.2.tar.gz (from https://pypi.org/simple/funvip/) (requires-python:<3.13,>3.8), version: 0.3.22.2 2024-05-29T15:35:07,229 Skipping link: No binaries permitted for funvip: https://files.pythonhosted.org/packages/57/9b/9bbb4c6a048de1865a8464effde71c673ad3f560af23f9c04b8a0deb12a4/FunVIP-0.3.23-py3-none-any.whl (from https://pypi.org/simple/funvip/) (requires-python:<3.13,>3.8) 2024-05-29T15:35:07,230 Found link https://files.pythonhosted.org/packages/06/a5/2dca249bf589eb5c8c52a4d014ae3b26d08983033bb4cc8f667da2c6b100/funvip-0.3.23.tar.gz (from https://pypi.org/simple/funvip/) (requires-python:<3.13,>3.8), version: 0.3.23 2024-05-29T15:35:07,231 Fetching project page and analyzing links: https://www.piwheels.org/simple/funvip/ 2024-05-29T15:35:07,232 Getting page https://www.piwheels.org/simple/funvip/ 2024-05-29T15:35:07,233 Found index url https://www.piwheels.org/simple/ 2024-05-29T15:35:07,415 Fetched page https://www.piwheels.org/simple/funvip/ as text/html 2024-05-29T15:35:07,418 Skipping link: No binaries permitted for funvip: https://www.piwheels.org/simple/funvip/FunVIP-0.3.22.2-py3-none-any.whl#sha256=8c5e476d94a5e4d4150a89c277d7da56ad82f28db2654cc57194f8614fa8a73c (from https://www.piwheels.org/simple/funvip/) (requires-python:<3.13,>3.8) 2024-05-29T15:35:07,419 Skipping link: No binaries permitted for funvip: https://www.piwheels.org/simple/funvip/FunVIP-0.3.22.1-py3-none-any.whl#sha256=6464c8044637848420c9213e543ed7b9357ce36d794c79a28b76c20cdb04226f (from https://www.piwheels.org/simple/funvip/) (requires-python:<3.13,>3.8) 2024-05-29T15:35:07,419 Skipping link: No binaries permitted for funvip: https://www.piwheels.org/simple/funvip/FunVIP-0.3.22-py3-none-any.whl#sha256=dd2db50f85481b3ce82217522dd0cf0afb20263cc65856f59e25fce5d1ce09d1 (from https://www.piwheels.org/simple/funvip/) (requires-python:<3.13,>3.8) 2024-05-29T15:35:07,419 Skipping link: No binaries permitted for funvip: https://www.piwheels.org/simple/funvip/FunVIP-0.3.21-py3-none-any.whl#sha256=e1863d6683eb41c991cce86262ef477d12ad652320dfb6fa0f5b9d184d7c42c6 (from https://www.piwheels.org/simple/funvip/) (requires-python:<3.13,>3.8) 2024-05-29T15:35:07,420 Skipping link: No binaries permitted for funvip: https://www.piwheels.org/simple/funvip/FunVIP-0.3.20-py3-none-any.whl#sha256=c93795ba7644b586c23cea4f5a6c421915b36ff5f5be700ee1a37d7857f03e3b (from https://www.piwheels.org/simple/funvip/) (requires-python:<3.13,>3.8) 2024-05-29T15:35:07,420 Skipping link: not a file: https://www.piwheels.org/simple/funvip/ 2024-05-29T15:35:07,421 Skipping link: not a file: https://pypi.org/simple/funvip/ 2024-05-29T15:35:07,440 Given no hashes to check 1 links for project 'funvip': discarding no candidates 2024-05-29T15:35:07,458 Collecting funvip==0.3.23 2024-05-29T15:35:07,460 Created temporary directory: /tmp/pip-unpack-1te7dv6w 2024-05-29T15:35:07,699 Downloading funvip-0.3.23.tar.gz (59.5 MB) 2024-05-29T15:35:21,652 Added funvip==0.3.23 from https://files.pythonhosted.org/packages/06/a5/2dca249bf589eb5c8c52a4d014ae3b26d08983033bb4cc8f667da2c6b100/funvip-0.3.23.tar.gz to build tracker '/tmp/pip-build-tracker-5lrnn4lp' 2024-05-29T15:35:21,657 Created temporary directory: /tmp/pip-build-env-0avai987 2024-05-29T15:35:21,662 Installing build dependencies: started 2024-05-29T15:35:21,663 Running command pip subprocess to install build dependencies 2024-05-29T15:35:22,801 Using pip 24.0 from /usr/local/lib/python3.11/dist-packages/pip (python 3.11) 2024-05-29T15:35:23,306 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2024-05-29T15:35:24,979 Collecting setuptools 2024-05-29T15:35:24,999 Using cached https://www.piwheels.org/simple/setuptools/setuptools-70.0.0-py3-none-any.whl (863 kB) 2024-05-29T15:35:25,190 Collecting setuptools-ext 2024-05-29T15:35:25,210 Downloading https://www.piwheels.org/simple/setuptools-ext/setuptools_ext-0.9-py3-none-any.whl (7.2 kB) 2024-05-29T15:35:25,408 Collecting wheel 2024-05-29T15:35:25,442 Using cached https://www.piwheels.org/simple/wheel/wheel-0.43.0-py3-none-any.whl (65 kB) 2024-05-29T15:35:28,280 Installing collected packages: wheel, setuptools, setuptools-ext 2024-05-29T15:35:28,509 Creating /tmp/pip-build-env-0avai987/overlay/local/bin 2024-05-29T15:35:28,511 changing mode of /tmp/pip-build-env-0avai987/overlay/local/bin/wheel to 755 2024-05-29T15:35:30,887 Successfully installed setuptools-70.0.0 setuptools-ext-0.9 wheel-0.43.0 2024-05-29T15:35:31,387 Installing build dependencies: finished with status 'done' 2024-05-29T15:35:31,390 Getting requirements to build wheel: started 2024-05-29T15:35:31,391 Running command Getting requirements to build wheel 2024-05-29T15:35:32,247 running egg_info 2024-05-29T15:35:32,251 writing FunVIP.egg-info/PKG-INFO 2024-05-29T15:35:32,254 writing dependency_links to FunVIP.egg-info/dependency_links.txt 2024-05-29T15:35:32,256 writing entry points to FunVIP.egg-info/entry_points.txt 2024-05-29T15:35:32,259 writing requirements to FunVIP.egg-info/requires.txt 2024-05-29T15:35:32,260 writing top-level names to FunVIP.egg-info/top_level.txt 2024-05-29T15:35:32,285 reading manifest file 'FunVIP.egg-info/SOURCES.txt' 2024-05-29T15:35:32,299 reading manifest template 'MANIFEST.in' 2024-05-29T15:35:32,384 adding license file 'LICENSE' 2024-05-29T15:35:32,395 writing manifest file 'FunVIP.egg-info/SOURCES.txt' 2024-05-29T15:35:32,513 Getting requirements to build wheel: finished with status 'done' 2024-05-29T15:35:32,528 Created temporary directory: /tmp/pip-modern-metadata-jfq8d836 2024-05-29T15:35:32,530 Preparing metadata (pyproject.toml): started 2024-05-29T15:35:32,531 Running command Preparing metadata (pyproject.toml) 2024-05-29T15:35:33,303 running dist_info 2024-05-29T15:35:33,308 creating /tmp/pip-modern-metadata-jfq8d836/FunVIP.egg-info 2024-05-29T15:35:33,312 writing /tmp/pip-modern-metadata-jfq8d836/FunVIP.egg-info/PKG-INFO 2024-05-29T15:35:33,315 writing dependency_links to /tmp/pip-modern-metadata-jfq8d836/FunVIP.egg-info/dependency_links.txt 2024-05-29T15:35:33,317 writing entry points to /tmp/pip-modern-metadata-jfq8d836/FunVIP.egg-info/entry_points.txt 2024-05-29T15:35:33,319 writing requirements to /tmp/pip-modern-metadata-jfq8d836/FunVIP.egg-info/requires.txt 2024-05-29T15:35:33,321 writing top-level names to /tmp/pip-modern-metadata-jfq8d836/FunVIP.egg-info/top_level.txt 2024-05-29T15:35:33,322 writing manifest file '/tmp/pip-modern-metadata-jfq8d836/FunVIP.egg-info/SOURCES.txt' 2024-05-29T15:35:33,344 reading manifest file '/tmp/pip-modern-metadata-jfq8d836/FunVIP.egg-info/SOURCES.txt' 2024-05-29T15:35:33,346 reading manifest template 'MANIFEST.in' 2024-05-29T15:35:33,424 adding license file 'LICENSE' 2024-05-29T15:35:33,432 writing manifest file '/tmp/pip-modern-metadata-jfq8d836/FunVIP.egg-info/SOURCES.txt' 2024-05-29T15:35:33,434 creating '/tmp/pip-modern-metadata-jfq8d836/FunVIP-0.3.23.dist-info' 2024-05-29T15:35:33,588 Preparing metadata (pyproject.toml): finished with status 'done' 2024-05-29T15:35:33,593 Source in /tmp/pip-wheel-s73dvf9_/funvip_f53628064c90483787f1761b8d3f5cef has version 0.3.23, which satisfies requirement funvip==0.3.23 from https://files.pythonhosted.org/packages/06/a5/2dca249bf589eb5c8c52a4d014ae3b26d08983033bb4cc8f667da2c6b100/funvip-0.3.23.tar.gz 2024-05-29T15:35:33,594 Removed funvip==0.3.23 from https://files.pythonhosted.org/packages/06/a5/2dca249bf589eb5c8c52a4d014ae3b26d08983033bb4cc8f667da2c6b100/funvip-0.3.23.tar.gz from build tracker '/tmp/pip-build-tracker-5lrnn4lp' 2024-05-29T15:35:33,599 Created temporary directory: /tmp/pip-unpack-oko9_coo 2024-05-29T15:35:33,600 Created temporary directory: /tmp/pip-unpack-wg5ozcd6 2024-05-29T15:35:33,626 Building wheels for collected packages: funvip 2024-05-29T15:35:33,630 Created temporary directory: /tmp/pip-wheel-_q8pby4w 2024-05-29T15:35:33,631 Destination directory: /tmp/pip-wheel-_q8pby4w 2024-05-29T15:35:33,633 Building wheel for funvip (pyproject.toml): started 2024-05-29T15:35:33,635 Running command Building wheel for funvip (pyproject.toml) 2024-05-29T15:35:34,410 running bdist_wheel 2024-05-29T15:35:34,426 running build 2024-05-29T15:35:34,426 running build_py 2024-05-29T15:35:34,431 creating build 2024-05-29T15:35:34,431 creating build/lib 2024-05-29T15:35:34,432 creating build/lib/funvip 2024-05-29T15:35:34,433 copying funvip/main.py -> build/lib/funvip 2024-05-29T15:35:34,436 copying funvip/FunVIP_GUI.py -> build/lib/funvip 2024-05-29T15:35:34,438 copying funvip/__init__.py -> build/lib/funvip 2024-05-29T15:35:34,441 creating build/lib/funvip/src 2024-05-29T15:35:34,442 copying funvip/src/align.py -> build/lib/funvip/src 2024-05-29T15:35:34,444 copying funvip/src/cluster.py -> build/lib/funvip/src 2024-05-29T15:35:34,446 copying funvip/src/trim.py -> build/lib/funvip/src 2024-05-29T15:35:34,448 copying funvip/src/modeltest.py -> build/lib/funvip/src 2024-05-29T15:35:34,450 copying funvip/src/validate_input.py -> build/lib/funvip/src 2024-05-29T15:35:34,453 copying funvip/src/ext.py -> build/lib/funvip/src 2024-05-29T15:35:34,455 copying funvip/src/tree_interpretation_pipe.py -> build/lib/funvip/src 2024-05-29T15:35:34,458 copying funvip/src/dataset.py -> build/lib/funvip/src 2024-05-29T15:35:34,461 copying funvip/src/version.py -> build/lib/funvip/src 2024-05-29T15:35:34,463 copying funvip/src/tree_interpretation.py -> build/lib/funvip/src 2024-05-29T15:35:34,466 copying funvip/src/hasher.py -> build/lib/funvip/src 2024-05-29T15:35:34,467 copying funvip/src/opt_generator.py -> build/lib/funvip/src 2024-05-29T15:35:34,469 copying funvip/src/concatenate.py -> build/lib/funvip/src 2024-05-29T15:35:34,471 copying funvip/src/validate_option.py -> build/lib/funvip/src 2024-05-29T15:35:34,474 copying funvip/src/tool.py -> build/lib/funvip/src 2024-05-29T15:35:34,477 copying funvip/src/initialize.py -> build/lib/funvip/src 2024-05-29T15:35:34,480 copying funvip/src/search.py -> build/lib/funvip/src 2024-05-29T15:35:34,482 copying funvip/src/command.py -> build/lib/funvip/src 2024-05-29T15:35:34,484 copying funvip/src/logger.py -> build/lib/funvip/src 2024-05-29T15:35:34,486 copying funvip/src/ncbi.py -> build/lib/funvip/src 2024-05-29T15:35:34,488 copying funvip/src/save.py -> build/lib/funvip/src 2024-05-29T15:35:34,490 copying funvip/src/tree.py -> build/lib/funvip/src 2024-05-29T15:35:34,492 copying funvip/src/reporter.py -> build/lib/funvip/src 2024-05-29T15:35:34,494 copying funvip/src/validation.py -> build/lib/funvip/src 2024-05-29T15:35:34,496 copying funvip/src/logics.py -> build/lib/funvip/src 2024-05-29T15:35:34,498 copying funvip/src/__init__.py -> build/lib/funvip/src 2024-05-29T15:35:34,500 creating build/lib/funvip/external 2024-05-29T15:35:34,500 copying funvip/external/__init__.py -> build/lib/funvip/external 2024-05-29T15:35:34,503 creating build/lib/funvip/data 2024-05-29T15:35:34,503 copying funvip/data/__init__.py -> build/lib/funvip/data 2024-05-29T15:35:34,505 running egg_info 2024-05-29T15:35:34,509 writing FunVIP.egg-info/PKG-INFO 2024-05-29T15:35:34,512 writing dependency_links to FunVIP.egg-info/dependency_links.txt 2024-05-29T15:35:34,513 writing entry points to FunVIP.egg-info/entry_points.txt 2024-05-29T15:35:34,515 writing requirements to FunVIP.egg-info/requires.txt 2024-05-29T15:35:34,516 writing top-level names to FunVIP.egg-info/top_level.txt 2024-05-29T15:35:34,532 reading manifest file 'FunVIP.egg-info/SOURCES.txt' 2024-05-29T15:35:34,538 reading manifest template 'MANIFEST.in' 2024-05-29T15:35:34,620 adding license file 'LICENSE' 2024-05-29T15:35:34,632 writing manifest file 'FunVIP.egg-info/SOURCES.txt' 2024-05-29T15:35:34,635 /tmp/pip-build-env-0avai987/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'funvip.external.BLAST_Windows' is absent from the `packages` configuration. 2024-05-29T15:35:34,635 !! 2024-05-29T15:35:34,636 ******************************************************************************** 2024-05-29T15:35:34,637 ############################ 2024-05-29T15:35:34,638 # Package would be ignored # 2024-05-29T15:35:34,638 ############################ 2024-05-29T15:35:34,639 Python recognizes 'funvip.external.BLAST_Windows' as an importable package[^1], 2024-05-29T15:35:34,639 but it is absent from setuptools' `packages` configuration. 2024-05-29T15:35:34,640 This leads to an ambiguous overall configuration. If you want to distribute this 2024-05-29T15:35:34,641 package, please make sure that 'funvip.external.BLAST_Windows' is explicitly added 2024-05-29T15:35:34,642 to the `packages` configuration field. 2024-05-29T15:35:34,643 Alternatively, you can also rely on setuptools' discovery methods 2024-05-29T15:35:34,643 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-05-29T15:35:34,644 instead of `find_packages(...)`/`find:`). 2024-05-29T15:35:34,644 You can read more about "package discovery" on setuptools documentation page: 2024-05-29T15:35:34,645 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-05-29T15:35:34,646 If you don't want 'funvip.external.BLAST_Windows' to be distributed and are 2024-05-29T15:35:34,646 already explicitly excluding 'funvip.external.BLAST_Windows' via 2024-05-29T15:35:34,647 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-05-29T15:35:34,647 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-05-29T15:35:34,648 combination with a more fine grained `package-data` configuration. 2024-05-29T15:35:34,649 You can read more about "package data files" on setuptools documentation page: 2024-05-29T15:35:34,649 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-05-29T15:35:34,651 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-05-29T15:35:34,651 even if it does not contain any `.py` files. 2024-05-29T15:35:34,652 On the other hand, currently there is no concept of package data 2024-05-29T15:35:34,652 directory, all directories are treated like packages. 2024-05-29T15:35:34,653 ******************************************************************************** 2024-05-29T15:35:34,653 !! 2024-05-29T15:35:34,654 check.warn(importable) 2024-05-29T15:35:34,655 /tmp/pip-build-env-0avai987/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'funvip.external.BLAST_Windows.bin' is absent from the `packages` configuration. 2024-05-29T15:35:34,655 !! 2024-05-29T15:35:34,656 ******************************************************************************** 2024-05-29T15:35:34,657 ############################ 2024-05-29T15:35:34,657 # Package would be ignored # 2024-05-29T15:35:34,658 ############################ 2024-05-29T15:35:34,658 Python recognizes 'funvip.external.BLAST_Windows.bin' as an importable package[^1], 2024-05-29T15:35:34,659 but it is absent from setuptools' `packages` configuration. 2024-05-29T15:35:34,660 This leads to an ambiguous overall configuration. If you want to distribute this 2024-05-29T15:35:34,660 package, please make sure that 'funvip.external.BLAST_Windows.bin' is explicitly added 2024-05-29T15:35:34,661 to the `packages` configuration field. 2024-05-29T15:35:34,662 Alternatively, you can also rely on setuptools' discovery methods 2024-05-29T15:35:34,662 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-05-29T15:35:34,663 instead of `find_packages(...)`/`find:`). 2024-05-29T15:35:34,664 You can read more about "package discovery" on setuptools documentation page: 2024-05-29T15:35:34,665 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-05-29T15:35:34,666 If you don't want 'funvip.external.BLAST_Windows.bin' to be distributed and are 2024-05-29T15:35:34,667 already explicitly excluding 'funvip.external.BLAST_Windows.bin' via 2024-05-29T15:35:34,667 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-05-29T15:35:34,668 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-05-29T15:35:34,668 combination with a more fine grained `package-data` configuration. 2024-05-29T15:35:34,669 You can read more about "package data files" on setuptools documentation page: 2024-05-29T15:35:34,670 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-05-29T15:35:34,672 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-05-29T15:35:34,672 even if it does not contain any `.py` files. 2024-05-29T15:35:34,672 On the other hand, currently there is no concept of package data 2024-05-29T15:35:34,673 directory, all directories are treated like packages. 2024-05-29T15:35:34,673 ******************************************************************************** 2024-05-29T15:35:34,674 !! 2024-05-29T15:35:34,675 check.warn(importable) 2024-05-29T15:35:34,675 /tmp/pip-build-env-0avai987/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'funvip.external.BLAST_Windows.doc' is absent from the `packages` configuration. 2024-05-29T15:35:34,676 !! 2024-05-29T15:35:34,677 ******************************************************************************** 2024-05-29T15:35:34,677 ############################ 2024-05-29T15:35:34,678 # Package would be ignored # 2024-05-29T15:35:34,678 ############################ 2024-05-29T15:35:34,678 Python recognizes 'funvip.external.BLAST_Windows.doc' as an importable package[^1], 2024-05-29T15:35:34,679 but it is absent from setuptools' `packages` configuration. 2024-05-29T15:35:34,680 This leads to an ambiguous overall configuration. If you want to distribute this 2024-05-29T15:35:34,681 package, please make sure that 'funvip.external.BLAST_Windows.doc' is explicitly added 2024-05-29T15:35:34,681 to the `packages` configuration field. 2024-05-29T15:35:34,682 Alternatively, you can also rely on setuptools' discovery methods 2024-05-29T15:35:34,683 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-05-29T15:35:34,684 instead of `find_packages(...)`/`find:`). 2024-05-29T15:35:34,685 You can read more about "package discovery" on setuptools documentation page: 2024-05-29T15:35:34,687 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-05-29T15:35:34,689 If you don't want 'funvip.external.BLAST_Windows.doc' to be distributed and are 2024-05-29T15:35:34,689 already explicitly excluding 'funvip.external.BLAST_Windows.doc' via 2024-05-29T15:35:34,690 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-05-29T15:35:34,690 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-05-29T15:35:34,691 combination with a more fine grained `package-data` configuration. 2024-05-29T15:35:34,692 You can read more about "package data files" on setuptools documentation page: 2024-05-29T15:35:34,693 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-05-29T15:35:34,695 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-05-29T15:35:34,695 even if it does not contain any `.py` files. 2024-05-29T15:35:34,696 On the other hand, currently there is no concept of package data 2024-05-29T15:35:34,696 directory, all directories are treated like packages. 2024-05-29T15:35:34,697 ******************************************************************************** 2024-05-29T15:35:34,698 !! 2024-05-29T15:35:34,699 check.warn(importable) 2024-05-29T15:35:34,699 /tmp/pip-build-env-0avai987/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'funvip.external.FastTree_Windows' is absent from the `packages` configuration. 2024-05-29T15:35:34,700 !! 2024-05-29T15:35:34,702 ******************************************************************************** 2024-05-29T15:35:34,702 ############################ 2024-05-29T15:35:34,703 # Package would be ignored # 2024-05-29T15:35:34,703 ############################ 2024-05-29T15:35:34,703 Python recognizes 'funvip.external.FastTree_Windows' as an importable package[^1], 2024-05-29T15:35:34,704 but it is absent from setuptools' `packages` configuration. 2024-05-29T15:35:34,705 This leads to an ambiguous overall configuration. If you want to distribute this 2024-05-29T15:35:34,705 package, please make sure that 'funvip.external.FastTree_Windows' is explicitly added 2024-05-29T15:35:34,706 to the `packages` configuration field. 2024-05-29T15:35:34,707 Alternatively, you can also rely on setuptools' discovery methods 2024-05-29T15:35:34,707 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-05-29T15:35:34,707 instead of `find_packages(...)`/`find:`). 2024-05-29T15:35:34,708 You can read more about "package discovery" on setuptools documentation page: 2024-05-29T15:35:34,709 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-05-29T15:35:34,710 If you don't want 'funvip.external.FastTree_Windows' to be distributed and are 2024-05-29T15:35:34,711 already explicitly excluding 'funvip.external.FastTree_Windows' via 2024-05-29T15:35:34,711 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-05-29T15:35:34,712 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-05-29T15:35:34,712 combination with a more fine grained `package-data` configuration. 2024-05-29T15:35:34,714 You can read more about "package data files" on setuptools documentation page: 2024-05-29T15:35:34,715 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-05-29T15:35:34,716 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-05-29T15:35:34,717 even if it does not contain any `.py` files. 2024-05-29T15:35:34,718 On the other hand, currently there is no concept of package data 2024-05-29T15:35:34,718 directory, all directories are treated like packages. 2024-05-29T15:35:34,719 ******************************************************************************** 2024-05-29T15:35:34,721 !! 2024-05-29T15:35:34,721 check.warn(importable) 2024-05-29T15:35:34,722 /tmp/pip-build-env-0avai987/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'funvip.external.RAxML_Windows' is absent from the `packages` configuration. 2024-05-29T15:35:34,722 !! 2024-05-29T15:35:34,724 ******************************************************************************** 2024-05-29T15:35:34,724 ############################ 2024-05-29T15:35:34,725 # Package would be ignored # 2024-05-29T15:35:34,726 ############################ 2024-05-29T15:35:34,726 Python recognizes 'funvip.external.RAxML_Windows' as an importable package[^1], 2024-05-29T15:35:34,727 but it is absent from setuptools' `packages` configuration. 2024-05-29T15:35:34,728 This leads to an ambiguous overall configuration. If you want to distribute this 2024-05-29T15:35:34,729 package, please make sure that 'funvip.external.RAxML_Windows' is explicitly added 2024-05-29T15:35:34,729 to the `packages` configuration field. 2024-05-29T15:35:34,730 Alternatively, you can also rely on setuptools' discovery methods 2024-05-29T15:35:34,731 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-05-29T15:35:34,732 instead of `find_packages(...)`/`find:`). 2024-05-29T15:35:34,733 You can read more about "package discovery" on setuptools documentation page: 2024-05-29T15:35:34,735 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-05-29T15:35:34,735 If you don't want 'funvip.external.RAxML_Windows' to be distributed and are 2024-05-29T15:35:34,736 already explicitly excluding 'funvip.external.RAxML_Windows' via 2024-05-29T15:35:34,737 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-05-29T15:35:34,737 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-05-29T15:35:34,737 combination with a more fine grained `package-data` configuration. 2024-05-29T15:35:34,738 You can read more about "package data files" on setuptools documentation page: 2024-05-29T15:35:34,739 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-05-29T15:35:34,741 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-05-29T15:35:34,741 even if it does not contain any `.py` files. 2024-05-29T15:35:34,742 On the other hand, currently there is no concept of package data 2024-05-29T15:35:34,742 directory, all directories are treated like packages. 2024-05-29T15:35:34,743 ******************************************************************************** 2024-05-29T15:35:34,743 !! 2024-05-29T15:35:34,744 check.warn(importable) 2024-05-29T15:35:34,744 /tmp/pip-build-env-0avai987/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'funvip.external.iqtree' is absent from the `packages` configuration. 2024-05-29T15:35:34,745 !! 2024-05-29T15:35:34,746 ******************************************************************************** 2024-05-29T15:35:34,747 ############################ 2024-05-29T15:35:34,747 # Package would be ignored # 2024-05-29T15:35:34,748 ############################ 2024-05-29T15:35:34,749 Python recognizes 'funvip.external.iqtree' as an importable package[^1], 2024-05-29T15:35:34,749 but it is absent from setuptools' `packages` configuration. 2024-05-29T15:35:34,751 This leads to an ambiguous overall configuration. If you want to distribute this 2024-05-29T15:35:34,751 package, please make sure that 'funvip.external.iqtree' is explicitly added 2024-05-29T15:35:34,752 to the `packages` configuration field. 2024-05-29T15:35:34,753 Alternatively, you can also rely on setuptools' discovery methods 2024-05-29T15:35:34,754 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-05-29T15:35:34,755 instead of `find_packages(...)`/`find:`). 2024-05-29T15:35:34,756 You can read more about "package discovery" on setuptools documentation page: 2024-05-29T15:35:34,757 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-05-29T15:35:34,758 If you don't want 'funvip.external.iqtree' to be distributed and are 2024-05-29T15:35:34,759 already explicitly excluding 'funvip.external.iqtree' via 2024-05-29T15:35:34,760 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-05-29T15:35:34,760 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-05-29T15:35:34,761 combination with a more fine grained `package-data` configuration. 2024-05-29T15:35:34,762 You can read more about "package data files" on setuptools documentation page: 2024-05-29T15:35:34,763 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-05-29T15:35:34,765 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-05-29T15:35:34,766 even if it does not contain any `.py` files. 2024-05-29T15:35:34,767 On the other hand, currently there is no concept of package data 2024-05-29T15:35:34,767 directory, all directories are treated like packages. 2024-05-29T15:35:34,768 ******************************************************************************** 2024-05-29T15:35:34,769 !! 2024-05-29T15:35:34,770 check.warn(importable) 2024-05-29T15:35:34,770 /tmp/pip-build-env-0avai987/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'funvip.external.iqtree.bin' is absent from the `packages` configuration. 2024-05-29T15:35:34,771 !! 2024-05-29T15:35:34,772 ******************************************************************************** 2024-05-29T15:35:34,772 ############################ 2024-05-29T15:35:34,773 # Package would be ignored # 2024-05-29T15:35:34,773 ############################ 2024-05-29T15:35:34,773 Python recognizes 'funvip.external.iqtree.bin' as an importable package[^1], 2024-05-29T15:35:34,774 but it is absent from setuptools' `packages` configuration. 2024-05-29T15:35:34,775 This leads to an ambiguous overall configuration. If you want to distribute this 2024-05-29T15:35:34,775 package, please make sure that 'funvip.external.iqtree.bin' is explicitly added 2024-05-29T15:35:34,776 to the `packages` configuration field. 2024-05-29T15:35:34,777 Alternatively, you can also rely on setuptools' discovery methods 2024-05-29T15:35:34,777 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-05-29T15:35:34,778 instead of `find_packages(...)`/`find:`). 2024-05-29T15:35:34,779 You can read more about "package discovery" on setuptools documentation page: 2024-05-29T15:35:34,780 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-05-29T15:35:34,782 If you don't want 'funvip.external.iqtree.bin' to be distributed and are 2024-05-29T15:35:34,782 already explicitly excluding 'funvip.external.iqtree.bin' via 2024-05-29T15:35:34,783 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-05-29T15:35:34,784 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-05-29T15:35:34,784 combination with a more fine grained `package-data` configuration. 2024-05-29T15:35:34,786 You can read more about "package data files" on setuptools documentation page: 2024-05-29T15:35:34,787 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-05-29T15:35:34,789 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-05-29T15:35:34,789 even if it does not contain any `.py` files. 2024-05-29T15:35:34,790 On the other hand, currently there is no concept of package data 2024-05-29T15:35:34,791 directory, all directories are treated like packages. 2024-05-29T15:35:34,791 ******************************************************************************** 2024-05-29T15:35:34,792 !! 2024-05-29T15:35:34,795 check.warn(importable) 2024-05-29T15:35:34,818 /tmp/pip-build-env-0avai987/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'funvip.external.mmseqs_Windows' is absent from the `packages` configuration. 2024-05-29T15:35:34,854 !! 2024-05-29T15:35:34,917 ******************************************************************************** 2024-05-29T15:35:34,982 ############################ 2024-05-29T15:35:35,033 # Package would be ignored # 2024-05-29T15:35:35,050 ############################ 2024-05-29T15:35:35,054 Python recognizes 'funvip.external.mmseqs_Windows' as an importable package[^1], 2024-05-29T15:35:35,056 but it is absent from setuptools' `packages` configuration. 2024-05-29T15:35:35,058 This leads to an ambiguous overall configuration. If you want to distribute this 2024-05-29T15:35:35,058 package, please make sure that 'funvip.external.mmseqs_Windows' is explicitly added 2024-05-29T15:35:35,059 to the `packages` configuration field. 2024-05-29T15:35:35,060 Alternatively, you can also rely on setuptools' discovery methods 2024-05-29T15:35:35,060 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-05-29T15:35:35,061 instead of `find_packages(...)`/`find:`). 2024-05-29T15:35:35,061 You can read more about "package discovery" on setuptools documentation page: 2024-05-29T15:35:35,062 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-05-29T15:35:35,063 If you don't want 'funvip.external.mmseqs_Windows' to be distributed and are 2024-05-29T15:35:35,063 already explicitly excluding 'funvip.external.mmseqs_Windows' via 2024-05-29T15:35:35,063 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-05-29T15:35:35,064 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-05-29T15:35:35,064 combination with a more fine grained `package-data` configuration. 2024-05-29T15:35:35,065 You can read more about "package data files" on setuptools documentation page: 2024-05-29T15:35:35,066 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-05-29T15:35:35,068 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-05-29T15:35:35,068 even if it does not contain any `.py` files. 2024-05-29T15:35:35,069 On the other hand, currently there is no concept of package data 2024-05-29T15:35:35,069 directory, all directories are treated like packages. 2024-05-29T15:35:35,070 ******************************************************************************** 2024-05-29T15:35:35,071 !! 2024-05-29T15:35:35,072 check.warn(importable) 2024-05-29T15:35:35,073 /tmp/pip-build-env-0avai987/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'funvip.external.mmseqs_Windows.bin' is absent from the `packages` configuration. 2024-05-29T15:35:35,073 !! 2024-05-29T15:35:35,075 ******************************************************************************** 2024-05-29T15:35:35,075 ############################ 2024-05-29T15:35:35,076 # Package would be ignored # 2024-05-29T15:35:35,076 ############################ 2024-05-29T15:35:35,077 Python recognizes 'funvip.external.mmseqs_Windows.bin' as an importable package[^1], 2024-05-29T15:35:35,078 but it is absent from setuptools' `packages` configuration. 2024-05-29T15:35:35,079 This leads to an ambiguous overall configuration. If you want to distribute this 2024-05-29T15:35:35,080 package, please make sure that 'funvip.external.mmseqs_Windows.bin' is explicitly added 2024-05-29T15:35:35,080 to the `packages` configuration field. 2024-05-29T15:35:35,081 Alternatively, you can also rely on setuptools' discovery methods 2024-05-29T15:35:35,082 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-05-29T15:35:35,082 instead of `find_packages(...)`/`find:`). 2024-05-29T15:35:35,083 You can read more about "package discovery" on setuptools documentation page: 2024-05-29T15:35:35,084 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-05-29T15:35:35,085 If you don't want 'funvip.external.mmseqs_Windows.bin' to be distributed and are 2024-05-29T15:35:35,086 already explicitly excluding 'funvip.external.mmseqs_Windows.bin' via 2024-05-29T15:35:35,087 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-05-29T15:35:35,087 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-05-29T15:35:35,088 combination with a more fine grained `package-data` configuration. 2024-05-29T15:35:35,089 You can read more about "package data files" on setuptools documentation page: 2024-05-29T15:35:35,090 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-05-29T15:35:35,091 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-05-29T15:35:35,092 even if it does not contain any `.py` files. 2024-05-29T15:35:35,092 On the other hand, currently there is no concept of package data 2024-05-29T15:35:35,093 directory, all directories are treated like packages. 2024-05-29T15:35:35,093 ******************************************************************************** 2024-05-29T15:35:35,094 !! 2024-05-29T15:35:35,094 check.warn(importable) 2024-05-29T15:35:35,095 /tmp/pip-build-env-0avai987/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'funvip.external.mmseqs_Windows.examples' is absent from the `packages` configuration. 2024-05-29T15:35:35,095 !! 2024-05-29T15:35:35,096 ******************************************************************************** 2024-05-29T15:35:35,096 ############################ 2024-05-29T15:35:35,097 # Package would be ignored # 2024-05-29T15:35:35,097 ############################ 2024-05-29T15:35:35,098 Python recognizes 'funvip.external.mmseqs_Windows.examples' as an importable package[^1], 2024-05-29T15:35:35,099 but it is absent from setuptools' `packages` configuration. 2024-05-29T15:35:35,100 This leads to an ambiguous overall configuration. If you want to distribute this 2024-05-29T15:35:35,100 package, please make sure that 'funvip.external.mmseqs_Windows.examples' is explicitly added 2024-05-29T15:35:35,101 to the `packages` configuration field. 2024-05-29T15:35:35,102 Alternatively, you can also rely on setuptools' discovery methods 2024-05-29T15:35:35,103 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-05-29T15:35:35,103 instead of `find_packages(...)`/`find:`). 2024-05-29T15:35:35,104 You can read more about "package discovery" on setuptools documentation page: 2024-05-29T15:35:35,105 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-05-29T15:35:35,106 If you don't want 'funvip.external.mmseqs_Windows.examples' to be distributed and are 2024-05-29T15:35:35,107 already explicitly excluding 'funvip.external.mmseqs_Windows.examples' via 2024-05-29T15:35:35,107 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-05-29T15:35:35,108 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-05-29T15:35:35,108 combination with a more fine grained `package-data` configuration. 2024-05-29T15:35:35,109 You can read more about "package data files" on setuptools documentation page: 2024-05-29T15:35:35,110 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-05-29T15:35:35,112 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-05-29T15:35:35,112 even if it does not contain any `.py` files. 2024-05-29T15:35:35,113 On the other hand, currently there is no concept of package data 2024-05-29T15:35:35,113 directory, all directories are treated like packages. 2024-05-29T15:35:35,114 ******************************************************************************** 2024-05-29T15:35:35,115 !! 2024-05-29T15:35:35,116 check.warn(importable) 2024-05-29T15:35:35,116 /tmp/pip-build-env-0avai987/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'funvip.external.mmseqs_Windows.matrices' is absent from the `packages` configuration. 2024-05-29T15:35:35,117 !! 2024-05-29T15:35:35,118 ******************************************************************************** 2024-05-29T15:35:35,119 ############################ 2024-05-29T15:35:35,119 # Package would be ignored # 2024-05-29T15:35:35,120 ############################ 2024-05-29T15:35:35,120 Python recognizes 'funvip.external.mmseqs_Windows.matrices' as an importable package[^1], 2024-05-29T15:35:35,121 but it is absent from setuptools' `packages` configuration. 2024-05-29T15:35:35,122 This leads to an ambiguous overall configuration. If you want to distribute this 2024-05-29T15:35:35,122 package, please make sure that 'funvip.external.mmseqs_Windows.matrices' is explicitly added 2024-05-29T15:35:35,122 to the `packages` configuration field. 2024-05-29T15:35:35,123 Alternatively, you can also rely on setuptools' discovery methods 2024-05-29T15:35:35,124 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-05-29T15:35:35,124 instead of `find_packages(...)`/`find:`). 2024-05-29T15:35:35,125 You can read more about "package discovery" on setuptools documentation page: 2024-05-29T15:35:35,126 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-05-29T15:35:35,127 If you don't want 'funvip.external.mmseqs_Windows.matrices' to be distributed and are 2024-05-29T15:35:35,128 already explicitly excluding 'funvip.external.mmseqs_Windows.matrices' via 2024-05-29T15:35:35,128 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-05-29T15:35:35,129 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-05-29T15:35:35,129 combination with a more fine grained `package-data` configuration. 2024-05-29T15:35:35,130 You can read more about "package data files" on setuptools documentation page: 2024-05-29T15:35:35,131 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-05-29T15:35:35,132 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-05-29T15:35:35,133 even if it does not contain any `.py` files. 2024-05-29T15:35:35,133 On the other hand, currently there is no concept of package data 2024-05-29T15:35:35,134 directory, all directories are treated like packages. 2024-05-29T15:35:35,134 ******************************************************************************** 2024-05-29T15:35:35,135 !! 2024-05-29T15:35:35,136 check.warn(importable) 2024-05-29T15:35:35,136 /tmp/pip-build-env-0avai987/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'funvip.external.mmseqs_Windows.util' is absent from the `packages` configuration. 2024-05-29T15:35:35,137 !! 2024-05-29T15:35:35,138 ******************************************************************************** 2024-05-29T15:35:35,138 ############################ 2024-05-29T15:35:35,139 # Package would be ignored # 2024-05-29T15:35:35,139 ############################ 2024-05-29T15:35:35,140 Python recognizes 'funvip.external.mmseqs_Windows.util' as an importable package[^1], 2024-05-29T15:35:35,140 but it is absent from setuptools' `packages` configuration. 2024-05-29T15:35:35,141 This leads to an ambiguous overall configuration. If you want to distribute this 2024-05-29T15:35:35,142 package, please make sure that 'funvip.external.mmseqs_Windows.util' is explicitly added 2024-05-29T15:35:35,142 to the `packages` configuration field. 2024-05-29T15:35:35,143 Alternatively, you can also rely on setuptools' discovery methods 2024-05-29T15:35:35,144 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-05-29T15:35:35,144 instead of `find_packages(...)`/`find:`). 2024-05-29T15:35:35,145 You can read more about "package discovery" on setuptools documentation page: 2024-05-29T15:35:35,147 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-05-29T15:35:35,147 If you don't want 'funvip.external.mmseqs_Windows.util' to be distributed and are 2024-05-29T15:35:35,148 already explicitly excluding 'funvip.external.mmseqs_Windows.util' via 2024-05-29T15:35:35,148 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-05-29T15:35:35,149 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-05-29T15:35:35,149 combination with a more fine grained `package-data` configuration. 2024-05-29T15:35:35,150 You can read more about "package data files" on setuptools documentation page: 2024-05-29T15:35:35,151 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-05-29T15:35:35,152 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-05-29T15:35:35,152 even if it does not contain any `.py` files. 2024-05-29T15:35:35,153 On the other hand, currently there is no concept of package data 2024-05-29T15:35:35,153 directory, all directories are treated like packages. 2024-05-29T15:35:35,153 ******************************************************************************** 2024-05-29T15:35:35,154 !! 2024-05-29T15:35:35,155 check.warn(importable) 2024-05-29T15:35:35,155 /tmp/pip-build-env-0avai987/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'funvip.src.__pycache__' is absent from the `packages` configuration. 2024-05-29T15:35:35,156 !! 2024-05-29T15:35:35,157 ******************************************************************************** 2024-05-29T15:35:35,157 ############################ 2024-05-29T15:35:35,158 # Package would be ignored # 2024-05-29T15:35:35,158 ############################ 2024-05-29T15:35:35,158 Python recognizes 'funvip.src.__pycache__' as an importable package[^1], 2024-05-29T15:35:35,159 but it is absent from setuptools' `packages` configuration. 2024-05-29T15:35:35,160 This leads to an ambiguous overall configuration. If you want to distribute this 2024-05-29T15:35:35,160 package, please make sure that 'funvip.src.__pycache__' is explicitly added 2024-05-29T15:35:35,161 to the `packages` configuration field. 2024-05-29T15:35:35,162 Alternatively, you can also rely on setuptools' discovery methods 2024-05-29T15:35:35,162 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-05-29T15:35:35,163 instead of `find_packages(...)`/`find:`). 2024-05-29T15:35:35,164 You can read more about "package discovery" on setuptools documentation page: 2024-05-29T15:35:35,165 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-05-29T15:35:35,166 If you don't want 'funvip.src.__pycache__' to be distributed and are 2024-05-29T15:35:35,166 already explicitly excluding 'funvip.src.__pycache__' via 2024-05-29T15:35:35,167 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-05-29T15:35:35,167 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-05-29T15:35:35,168 combination with a more fine grained `package-data` configuration. 2024-05-29T15:35:35,169 You can read more about "package data files" on setuptools documentation page: 2024-05-29T15:35:35,170 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-05-29T15:35:35,171 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-05-29T15:35:35,172 even if it does not contain any `.py` files. 2024-05-29T15:35:35,172 On the other hand, currently there is no concept of package data 2024-05-29T15:35:35,173 directory, all directories are treated like packages. 2024-05-29T15:35:35,174 ******************************************************************************** 2024-05-29T15:35:35,175 !! 2024-05-29T15:35:35,175 check.warn(importable) 2024-05-29T15:35:35,176 /tmp/pip-build-env-0avai987/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'funvip.src.templates' is absent from the `packages` configuration. 2024-05-29T15:35:35,177 !! 2024-05-29T15:35:35,177 ******************************************************************************** 2024-05-29T15:35:35,178 ############################ 2024-05-29T15:35:35,178 # Package would be ignored # 2024-05-29T15:35:35,179 ############################ 2024-05-29T15:35:35,179 Python recognizes 'funvip.src.templates' as an importable package[^1], 2024-05-29T15:35:35,179 but it is absent from setuptools' `packages` configuration. 2024-05-29T15:35:35,180 This leads to an ambiguous overall configuration. If you want to distribute this 2024-05-29T15:35:35,181 package, please make sure that 'funvip.src.templates' is explicitly added 2024-05-29T15:35:35,181 to the `packages` configuration field. 2024-05-29T15:35:35,182 Alternatively, you can also rely on setuptools' discovery methods 2024-05-29T15:35:35,183 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-05-29T15:35:35,183 instead of `find_packages(...)`/`find:`). 2024-05-29T15:35:35,184 You can read more about "package discovery" on setuptools documentation page: 2024-05-29T15:35:35,185 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-05-29T15:35:35,186 If you don't want 'funvip.src.templates' to be distributed and are 2024-05-29T15:35:35,187 already explicitly excluding 'funvip.src.templates' via 2024-05-29T15:35:35,188 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-05-29T15:35:35,188 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-05-29T15:35:35,189 combination with a more fine grained `package-data` configuration. 2024-05-29T15:35:35,190 You can read more about "package data files" on setuptools documentation page: 2024-05-29T15:35:35,192 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-05-29T15:35:35,193 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-05-29T15:35:35,194 even if it does not contain any `.py` files. 2024-05-29T15:35:35,195 On the other hand, currently there is no concept of package data 2024-05-29T15:35:35,196 directory, all directories are treated like packages. 2024-05-29T15:35:35,196 ******************************************************************************** 2024-05-29T15:35:35,197 !! 2024-05-29T15:35:35,198 check.warn(importable) 2024-05-29T15:35:35,198 /tmp/pip-build-env-0avai987/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'funvip.test_dataset.penicillium' is absent from the `packages` configuration. 2024-05-29T15:35:35,199 !! 2024-05-29T15:35:35,200 ******************************************************************************** 2024-05-29T15:35:35,201 ############################ 2024-05-29T15:35:35,201 # Package would be ignored # 2024-05-29T15:35:35,202 ############################ 2024-05-29T15:35:35,202 Python recognizes 'funvip.test_dataset.penicillium' as an importable package[^1], 2024-05-29T15:35:35,203 but it is absent from setuptools' `packages` configuration. 2024-05-29T15:35:35,205 This leads to an ambiguous overall configuration. If you want to distribute this 2024-05-29T15:35:35,205 package, please make sure that 'funvip.test_dataset.penicillium' is explicitly added 2024-05-29T15:35:35,206 to the `packages` configuration field. 2024-05-29T15:35:35,207 Alternatively, you can also rely on setuptools' discovery methods 2024-05-29T15:35:35,208 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-05-29T15:35:35,208 instead of `find_packages(...)`/`find:`). 2024-05-29T15:35:35,209 You can read more about "package discovery" on setuptools documentation page: 2024-05-29T15:35:35,210 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-05-29T15:35:35,211 If you don't want 'funvip.test_dataset.penicillium' to be distributed and are 2024-05-29T15:35:35,211 already explicitly excluding 'funvip.test_dataset.penicillium' via 2024-05-29T15:35:35,211 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-05-29T15:35:35,212 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-05-29T15:35:35,212 combination with a more fine grained `package-data` configuration. 2024-05-29T15:35:35,213 You can read more about "package data files" on setuptools documentation page: 2024-05-29T15:35:35,214 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-05-29T15:35:35,215 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-05-29T15:35:35,216 even if it does not contain any `.py` files. 2024-05-29T15:35:35,216 On the other hand, currently there is no concept of package data 2024-05-29T15:35:35,217 directory, all directories are treated like packages. 2024-05-29T15:35:35,217 ******************************************************************************** 2024-05-29T15:35:35,219 !! 2024-05-29T15:35:35,219 check.warn(importable) 2024-05-29T15:35:35,220 /tmp/pip-build-env-0avai987/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'funvip.test_dataset.penicillium.DB' is absent from the `packages` configuration. 2024-05-29T15:35:35,220 !! 2024-05-29T15:35:35,221 ******************************************************************************** 2024-05-29T15:35:35,222 ############################ 2024-05-29T15:35:35,222 # Package would be ignored # 2024-05-29T15:35:35,223 ############################ 2024-05-29T15:35:35,224 Python recognizes 'funvip.test_dataset.penicillium.DB' as an importable package[^1], 2024-05-29T15:35:35,224 but it is absent from setuptools' `packages` configuration. 2024-05-29T15:35:35,226 This leads to an ambiguous overall configuration. If you want to distribute this 2024-05-29T15:35:35,226 package, please make sure that 'funvip.test_dataset.penicillium.DB' is explicitly added 2024-05-29T15:35:35,227 to the `packages` configuration field. 2024-05-29T15:35:35,228 Alternatively, you can also rely on setuptools' discovery methods 2024-05-29T15:35:35,229 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-05-29T15:35:35,229 instead of `find_packages(...)`/`find:`). 2024-05-29T15:35:35,230 You can read more about "package discovery" on setuptools documentation page: 2024-05-29T15:35:35,231 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-05-29T15:35:35,233 If you don't want 'funvip.test_dataset.penicillium.DB' to be distributed and are 2024-05-29T15:35:35,233 already explicitly excluding 'funvip.test_dataset.penicillium.DB' via 2024-05-29T15:35:35,234 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-05-29T15:35:35,234 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-05-29T15:35:35,235 combination with a more fine grained `package-data` configuration. 2024-05-29T15:35:35,237 You can read more about "package data files" on setuptools documentation page: 2024-05-29T15:35:35,238 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-05-29T15:35:35,239 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-05-29T15:35:35,239 even if it does not contain any `.py` files. 2024-05-29T15:35:35,240 On the other hand, currently there is no concept of package data 2024-05-29T15:35:35,240 directory, all directories are treated like packages. 2024-05-29T15:35:35,241 ******************************************************************************** 2024-05-29T15:35:35,242 !! 2024-05-29T15:35:35,242 check.warn(importable) 2024-05-29T15:35:35,242 /tmp/pip-build-env-0avai987/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'funvip.test_dataset.penicillium.Query' is absent from the `packages` configuration. 2024-05-29T15:35:35,243 !! 2024-05-29T15:35:35,244 ******************************************************************************** 2024-05-29T15:35:35,244 ############################ 2024-05-29T15:35:35,245 # Package would be ignored # 2024-05-29T15:35:35,245 ############################ 2024-05-29T15:35:35,246 Python recognizes 'funvip.test_dataset.penicillium.Query' as an importable package[^1], 2024-05-29T15:35:35,246 but it is absent from setuptools' `packages` configuration. 2024-05-29T15:35:35,247 This leads to an ambiguous overall configuration. If you want to distribute this 2024-05-29T15:35:35,248 package, please make sure that 'funvip.test_dataset.penicillium.Query' is explicitly added 2024-05-29T15:35:35,248 to the `packages` configuration field. 2024-05-29T15:35:35,250 Alternatively, you can also rely on setuptools' discovery methods 2024-05-29T15:35:35,250 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-05-29T15:35:35,251 instead of `find_packages(...)`/`find:`). 2024-05-29T15:35:35,252 You can read more about "package discovery" on setuptools documentation page: 2024-05-29T15:35:35,254 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-05-29T15:35:35,255 If you don't want 'funvip.test_dataset.penicillium.Query' to be distributed and are 2024-05-29T15:35:35,256 already explicitly excluding 'funvip.test_dataset.penicillium.Query' via 2024-05-29T15:35:35,256 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-05-29T15:35:35,257 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-05-29T15:35:35,257 combination with a more fine grained `package-data` configuration. 2024-05-29T15:35:35,259 You can read more about "package data files" on setuptools documentation page: 2024-05-29T15:35:35,260 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-05-29T15:35:35,261 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-05-29T15:35:35,262 even if it does not contain any `.py` files. 2024-05-29T15:35:35,263 On the other hand, currently there is no concept of package data 2024-05-29T15:35:35,263 directory, all directories are treated like packages. 2024-05-29T15:35:35,264 ******************************************************************************** 2024-05-29T15:35:35,265 !! 2024-05-29T15:35:35,266 check.warn(importable) 2024-05-29T15:35:35,266 /tmp/pip-build-env-0avai987/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'funvip.test_dataset.terrei' is absent from the `packages` configuration. 2024-05-29T15:35:35,267 !! 2024-05-29T15:35:35,268 ******************************************************************************** 2024-05-29T15:35:35,269 ############################ 2024-05-29T15:35:35,270 # Package would be ignored # 2024-05-29T15:35:35,270 ############################ 2024-05-29T15:35:35,271 Python recognizes 'funvip.test_dataset.terrei' as an importable package[^1], 2024-05-29T15:35:35,271 but it is absent from setuptools' `packages` configuration. 2024-05-29T15:35:35,272 This leads to an ambiguous overall configuration. If you want to distribute this 2024-05-29T15:35:35,272 package, please make sure that 'funvip.test_dataset.terrei' is explicitly added 2024-05-29T15:35:35,273 to the `packages` configuration field. 2024-05-29T15:35:35,274 Alternatively, you can also rely on setuptools' discovery methods 2024-05-29T15:35:35,274 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-05-29T15:35:35,275 instead of `find_packages(...)`/`find:`). 2024-05-29T15:35:35,275 You can read more about "package discovery" on setuptools documentation page: 2024-05-29T15:35:35,276 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-05-29T15:35:35,277 If you don't want 'funvip.test_dataset.terrei' to be distributed and are 2024-05-29T15:35:35,278 already explicitly excluding 'funvip.test_dataset.terrei' via 2024-05-29T15:35:35,278 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-05-29T15:35:35,279 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-05-29T15:35:35,279 combination with a more fine grained `package-data` configuration. 2024-05-29T15:35:35,280 You can read more about "package data files" on setuptools documentation page: 2024-05-29T15:35:35,281 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-05-29T15:35:35,283 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-05-29T15:35:35,284 even if it does not contain any `.py` files. 2024-05-29T15:35:35,284 On the other hand, currently there is no concept of package data 2024-05-29T15:35:35,285 directory, all directories are treated like packages. 2024-05-29T15:35:35,286 ******************************************************************************** 2024-05-29T15:35:35,287 !! 2024-05-29T15:35:35,287 check.warn(importable) 2024-05-29T15:35:35,288 /tmp/pip-build-env-0avai987/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'funvip.test_dataset.terrei.DB' is absent from the `packages` configuration. 2024-05-29T15:35:35,288 !! 2024-05-29T15:35:35,289 ******************************************************************************** 2024-05-29T15:35:35,290 ############################ 2024-05-29T15:35:35,291 # Package would be ignored # 2024-05-29T15:35:35,291 ############################ 2024-05-29T15:35:35,292 Python recognizes 'funvip.test_dataset.terrei.DB' as an importable package[^1], 2024-05-29T15:35:35,292 but it is absent from setuptools' `packages` configuration. 2024-05-29T15:35:35,293 This leads to an ambiguous overall configuration. If you want to distribute this 2024-05-29T15:35:35,294 package, please make sure that 'funvip.test_dataset.terrei.DB' is explicitly added 2024-05-29T15:35:35,294 to the `packages` configuration field. 2024-05-29T15:35:35,296 Alternatively, you can also rely on setuptools' discovery methods 2024-05-29T15:35:35,296 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-05-29T15:35:35,297 instead of `find_packages(...)`/`find:`). 2024-05-29T15:35:35,298 You can read more about "package discovery" on setuptools documentation page: 2024-05-29T15:35:35,299 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-05-29T15:35:35,300 If you don't want 'funvip.test_dataset.terrei.DB' to be distributed and are 2024-05-29T15:35:35,301 already explicitly excluding 'funvip.test_dataset.terrei.DB' via 2024-05-29T15:35:35,302 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-05-29T15:35:35,302 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-05-29T15:35:35,303 combination with a more fine grained `package-data` configuration. 2024-05-29T15:35:35,324 You can read more about "package data files" on setuptools documentation page: 2024-05-29T15:35:35,330 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-05-29T15:35:35,368 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-05-29T15:35:35,387 even if it does not contain any `.py` files. 2024-05-29T15:35:35,410 On the other hand, currently there is no concept of package data 2024-05-29T15:35:35,426 directory, all directories are treated like packages. 2024-05-29T15:35:35,457 ******************************************************************************** 2024-05-29T15:35:35,516 !! 2024-05-29T15:35:35,517 check.warn(importable) 2024-05-29T15:35:35,517 /tmp/pip-build-env-0avai987/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'funvip.test_dataset.terrei.Query' is absent from the `packages` configuration. 2024-05-29T15:35:35,518 !! 2024-05-29T15:35:35,518 ******************************************************************************** 2024-05-29T15:35:35,519 ############################ 2024-05-29T15:35:35,520 # Package would be ignored # 2024-05-29T15:35:35,520 ############################ 2024-05-29T15:35:35,521 Python recognizes 'funvip.test_dataset.terrei.Query' as an importable package[^1], 2024-05-29T15:35:35,521 but it is absent from setuptools' `packages` configuration. 2024-05-29T15:35:35,522 This leads to an ambiguous overall configuration. If you want to distribute this 2024-05-29T15:35:35,523 package, please make sure that 'funvip.test_dataset.terrei.Query' is explicitly added 2024-05-29T15:35:35,523 to the `packages` configuration field. 2024-05-29T15:35:35,525 Alternatively, you can also rely on setuptools' discovery methods 2024-05-29T15:35:35,525 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-05-29T15:35:35,526 instead of `find_packages(...)`/`find:`). 2024-05-29T15:35:35,527 You can read more about "package discovery" on setuptools documentation page: 2024-05-29T15:35:35,528 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-05-29T15:35:35,529 If you don't want 'funvip.test_dataset.terrei.Query' to be distributed and are 2024-05-29T15:35:35,529 already explicitly excluding 'funvip.test_dataset.terrei.Query' via 2024-05-29T15:35:35,530 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-05-29T15:35:35,530 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-05-29T15:35:35,531 combination with a more fine grained `package-data` configuration. 2024-05-29T15:35:35,532 You can read more about "package data files" on setuptools documentation page: 2024-05-29T15:35:35,533 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-05-29T15:35:35,535 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-05-29T15:35:35,535 even if it does not contain any `.py` files. 2024-05-29T15:35:35,536 On the other hand, currently there is no concept of package data 2024-05-29T15:35:35,537 directory, all directories are treated like packages. 2024-05-29T15:35:35,537 ******************************************************************************** 2024-05-29T15:35:35,539 !! 2024-05-29T15:35:35,539 check.warn(importable) 2024-05-29T15:35:35,539 copying funvip/data/Option_manager.xlsx -> build/lib/funvip/data 2024-05-29T15:35:35,540 copying funvip/data/genus_line.txt -> build/lib/funvip/data 2024-05-29T15:35:35,540 copying funvip/external/MAFFT_Windows.zip -> build/lib/funvip/external 2024-05-29T15:35:35,541 copying funvip/external/MAFFT_LICENSE -> build/lib/funvip/external 2024-05-29T15:35:35,541 creating build/lib/funvip/preset 2024-05-29T15:35:35,542 copying funvip/preset/accurate.yaml -> build/lib/funvip/preset 2024-05-29T15:35:35,542 copying funvip/preset/fast.yaml -> build/lib/funvip/preset 2024-05-29T15:35:35,542 copying funvip/src/.gitignore -> build/lib/funvip/src 2024-05-29T15:35:35,543 creating build/lib/funvip/src/__pycache__ 2024-05-29T15:35:35,543 copying funvip/src/__pycache__/CATV_pipe.cpython-310.pyc -> build/lib/funvip/src/__pycache__ 2024-05-29T15:35:35,544 copying funvip/src/__pycache__/CAT_V.cpython-310.pyc -> build/lib/funvip/src/__pycache__ 2024-05-29T15:35:35,544 copying funvip/src/__pycache__/CAT_V.cpython-39.pyc -> build/lib/funvip/src/__pycache__ 2024-05-29T15:35:35,545 copying funvip/src/__pycache__/CAT_V_pipe.cpython-39.pyc -> build/lib/funvip/src/__pycache__ 2024-05-29T15:35:35,545 copying funvip/src/__pycache__/__init__.cpython-310.pyc -> build/lib/funvip/src/__pycache__ 2024-05-29T15:35:35,545 copying funvip/src/__pycache__/__init__.cpython-39.pyc -> build/lib/funvip/src/__pycache__ 2024-05-29T15:35:35,546 copying funvip/src/__pycache__/align.cpython-310.pyc -> build/lib/funvip/src/__pycache__ 2024-05-29T15:35:35,546 copying funvip/src/__pycache__/cluster.cpython-39.pyc -> build/lib/funvip/src/__pycache__ 2024-05-29T15:35:35,547 copying funvip/src/__pycache__/dataset.cpython-39.pyc -> build/lib/funvip/src/__pycache__ 2024-05-29T15:35:35,548 copying funvip/src/__pycache__/ext.cpython-310.pyc -> build/lib/funvip/src/__pycache__ 2024-05-29T15:35:35,549 copying funvip/src/__pycache__/ext.cpython-39.pyc -> build/lib/funvip/src/__pycache__ 2024-05-29T15:35:35,549 copying funvip/src/__pycache__/hasher.cpython-39.pyc -> build/lib/funvip/src/__pycache__ 2024-05-29T15:35:35,550 copying funvip/src/__pycache__/initialize.cpython-39.pyc -> build/lib/funvip/src/__pycache__ 2024-05-29T15:35:35,550 copying funvip/src/__pycache__/io.cpython-310.pyc -> build/lib/funvip/src/__pycache__ 2024-05-29T15:35:35,551 copying funvip/src/__pycache__/io.cpython-39.pyc -> build/lib/funvip/src/__pycache__ 2024-05-29T15:35:35,552 copying funvip/src/__pycache__/logger.cpython-39.pyc -> build/lib/funvip/src/__pycache__ 2024-05-29T15:35:35,552 copying funvip/src/__pycache__/modeltest.cpython-39.pyc -> build/lib/funvip/src/__pycache__ 2024-05-29T15:35:35,553 copying funvip/src/__pycache__/multigene.cpython-39.pyc -> build/lib/funvip/src/__pycache__ 2024-05-29T15:35:35,554 copying funvip/src/__pycache__/ncbi.cpython-39.pyc -> build/lib/funvip/src/__pycache__ 2024-05-29T15:35:35,554 copying funvip/src/__pycache__/opt_generator.cpython-39.pyc -> build/lib/funvip/src/__pycache__ 2024-05-29T15:35:35,555 copying funvip/src/__pycache__/reporter.cpython-39.pyc -> build/lib/funvip/src/__pycache__ 2024-05-29T15:35:35,555 copying funvip/src/__pycache__/search.cpython-39.pyc -> build/lib/funvip/src/__pycache__ 2024-05-29T15:35:35,556 copying funvip/src/__pycache__/tool.cpython-39.pyc -> build/lib/funvip/src/__pycache__ 2024-05-29T15:35:35,556 copying funvip/src/__pycache__/validation.cpython-39.pyc -> build/lib/funvip/src/__pycache__ 2024-05-29T15:35:35,557 copying funvip/src/__pycache__/visualize.cpython-39.pyc -> build/lib/funvip/src/__pycache__ 2024-05-29T15:35:35,558 creating build/lib/funvip/src/templates 2024-05-29T15:35:35,558 copying funvip/src/templates/template.html -> build/lib/funvip/src/templates 2024-05-29T15:35:35,559 creating build/lib/funvip/external/BLAST_Windows 2024-05-29T15:35:35,560 copying funvip/external/BLAST_Windows/Uninstall-ncbi-blast-2.12.0+.exe -> build/lib/funvip/external/BLAST_Windows 2024-05-29T15:35:35,560 creating build/lib/funvip/external/BLAST_Windows/bin 2024-05-29T15:35:35,561 copying funvip/external/BLAST_Windows/bin/blastn.exe -> build/lib/funvip/external/BLAST_Windows/bin 2024-05-29T15:35:35,561 copying funvip/external/BLAST_Windows/bin/cleanup-blastdb-volumes.py -> build/lib/funvip/external/BLAST_Windows/bin 2024-05-29T15:35:35,562 copying funvip/external/BLAST_Windows/bin/get_species_taxids.sh -> build/lib/funvip/external/BLAST_Windows/bin 2024-05-29T15:35:35,562 copying funvip/external/BLAST_Windows/bin/legacy_blast.pl -> build/lib/funvip/external/BLAST_Windows/bin 2024-05-29T15:35:35,563 copying funvip/external/BLAST_Windows/bin/makeblastdb.exe -> build/lib/funvip/external/BLAST_Windows/bin 2024-05-29T15:35:35,749 copying funvip/external/BLAST_Windows/bin/nghttp2.dll -> build/lib/funvip/external/BLAST_Windows/bin 2024-05-29T15:35:35,753 copying funvip/external/BLAST_Windows/bin/update_blastdb.pl -> build/lib/funvip/external/BLAST_Windows/bin 2024-05-29T15:35:35,756 creating build/lib/funvip/external/BLAST_Windows/doc 2024-05-29T15:35:35,757 copying funvip/external/BLAST_Windows/doc/README.txt -> build/lib/funvip/external/BLAST_Windows/doc 2024-05-29T15:35:35,759 creating build/lib/funvip/external/FastTree_Windows 2024-05-29T15:35:35,760 copying funvip/external/FastTree_Windows/FastTree.exe -> build/lib/funvip/external/FastTree_Windows 2024-05-29T15:35:35,767 creating build/lib/funvip/external/Gblocks_Windows_0.91b 2024-05-29T15:35:35,767 creating build/lib/funvip/external/Gblocks_Windows_0.91b/Gblocks_0.91b 2024-05-29T15:35:35,768 copying funvip/external/Gblocks_Windows_0.91b/Gblocks_0.91b/Gblocks.exe -> build/lib/funvip/external/Gblocks_Windows_0.91b/Gblocks_0.91b 2024-05-29T15:35:35,774 copying funvip/external/Gblocks_Windows_0.91b/Gblocks_0.91b/nad3.pir -> build/lib/funvip/external/Gblocks_Windows_0.91b/Gblocks_0.91b 2024-05-29T15:35:35,777 copying funvip/external/Gblocks_Windows_0.91b/Gblocks_0.91b/paths -> build/lib/funvip/external/Gblocks_Windows_0.91b/Gblocks_0.91b 2024-05-29T15:35:35,779 creating build/lib/funvip/external/Gblocks_Windows_0.91b/Gblocks_0.91b/Documentation 2024-05-29T15:35:35,780 copying funvip/external/Gblocks_Windows_0.91b/Gblocks_0.91b/Documentation/Gblocks_documentation.html -> build/lib/funvip/external/Gblocks_Windows_0.91b/Gblocks_0.91b/Documentation 2024-05-29T15:35:35,784 creating build/lib/funvip/external/Gblocks_Windows_0.91b/Gblocks_0.91b/more_alignments 2024-05-29T15:35:35,785 copying funvip/external/Gblocks_Windows_0.91b/Gblocks_0.91b/more_alignments/cox2.pir -> build/lib/funvip/external/Gblocks_Windows_0.91b/Gblocks_0.91b/more_alignments 2024-05-29T15:35:35,789 copying funvip/external/Gblocks_Windows_0.91b/Gblocks_0.91b/more_alignments/cytb.pir -> build/lib/funvip/external/Gblocks_Windows_0.91b/Gblocks_0.91b/more_alignments 2024-05-29T15:35:35,791 copying funvip/external/Gblocks_Windows_0.91b/Gblocks_0.91b/more_alignments/nad3.pir -> build/lib/funvip/external/Gblocks_Windows_0.91b/Gblocks_0.91b/more_alignments 2024-05-29T15:35:35,794 copying funvip/external/Gblocks_Windows_0.91b/Gblocks_0.91b/more_alignments/nad5.pir -> build/lib/funvip/external/Gblocks_Windows_0.91b/Gblocks_0.91b/more_alignments 2024-05-29T15:35:35,797 creating build/lib/funvip/external/RAxML_Windows 2024-05-29T15:35:35,798 copying funvip/external/RAxML_Windows/GPL-3.0.txt -> build/lib/funvip/external/RAxML_Windows 2024-05-29T15:35:35,801 copying funvip/external/RAxML_Windows/README -> build/lib/funvip/external/RAxML_Windows 2024-05-29T15:35:35,803 copying funvip/external/RAxML_Windows/raxmlHPC-PTHREADS-AVX2.exe -> build/lib/funvip/external/RAxML_Windows 2024-05-29T15:35:35,833 creating build/lib/funvip/external/iqtree 2024-05-29T15:35:35,835 copying funvip/external/iqtree/example.cf -> build/lib/funvip/external/iqtree 2024-05-29T15:35:35,870 copying funvip/external/iqtree/example.nex -> build/lib/funvip/external/iqtree 2024-05-29T15:35:35,872 copying funvip/external/iqtree/example.phy -> build/lib/funvip/external/iqtree 2024-05-29T15:35:35,876 copying funvip/external/iqtree/models.nex -> build/lib/funvip/external/iqtree 2024-05-29T15:35:35,880 creating build/lib/funvip/external/iqtree/bin 2024-05-29T15:35:35,881 copying funvip/external/iqtree/bin/iqtree2-click.exe -> build/lib/funvip/external/iqtree/bin 2024-05-29T15:35:36,074 copying funvip/external/iqtree/bin/iqtree2.exe -> build/lib/funvip/external/iqtree/bin 2024-05-29T15:35:36,254 copying funvip/external/iqtree/bin/libiomp5md.dll -> build/lib/funvip/external/iqtree/bin 2024-05-29T15:35:36,275 creating build/lib/funvip/external/mmseqs_Windows 2024-05-29T15:35:36,276 copying funvip/external/mmseqs_Windows/LICENSE.md -> build/lib/funvip/external/mmseqs_Windows 2024-05-29T15:35:36,279 copying funvip/external/mmseqs_Windows/README.md -> build/lib/funvip/external/mmseqs_Windows 2024-05-29T15:35:36,281 copying funvip/external/mmseqs_Windows/mmseqs.bat -> build/lib/funvip/external/mmseqs_Windows 2024-05-29T15:35:36,283 creating build/lib/funvip/external/mmseqs_Windows/bin 2024-05-29T15:35:36,284 copying funvip/external/mmseqs_Windows/bin/busybox.exe -> build/lib/funvip/external/mmseqs_Windows/bin 2024-05-29T15:35:36,296 copying funvip/external/mmseqs_Windows/bin/cygbz2-1.dll -> build/lib/funvip/external/mmseqs_Windows/bin 2024-05-29T15:35:36,299 copying funvip/external/mmseqs_Windows/bin/cyggcc_s-seh-1.dll -> build/lib/funvip/external/mmseqs_Windows/bin 2024-05-29T15:35:36,304 copying funvip/external/mmseqs_Windows/bin/cyggomp-1.dll -> build/lib/funvip/external/mmseqs_Windows/bin 2024-05-29T15:35:36,350 copying funvip/external/mmseqs_Windows/bin/cygstdc++-6.dll -> build/lib/funvip/external/mmseqs_Windows/bin 2024-05-29T15:35:36,383 copying funvip/external/mmseqs_Windows/bin/cygwin1.dll -> build/lib/funvip/external/mmseqs_Windows/bin 2024-05-29T15:35:36,442 copying funvip/external/mmseqs_Windows/bin/cygz.dll -> build/lib/funvip/external/mmseqs_Windows/bin 2024-05-29T15:35:36,445 copying funvip/external/mmseqs_Windows/bin/mmseqs.exe -> build/lib/funvip/external/mmseqs_Windows/bin 2024-05-29T15:35:36,626 creating build/lib/funvip/external/mmseqs_Windows/examples 2024-05-29T15:35:36,627 copying funvip/external/mmseqs_Windows/examples/QUERY.fasta -> build/lib/funvip/external/mmseqs_Windows/examples 2024-05-29T15:35:36,634 creating build/lib/funvip/external/mmseqs_Windows/matrices 2024-05-29T15:35:36,635 copying funvip/external/mmseqs_Windows/matrices/PAM10.out -> build/lib/funvip/external/mmseqs_Windows/matrices 2024-05-29T15:35:36,637 copying funvip/external/mmseqs_Windows/matrices/PAM100.out -> build/lib/funvip/external/mmseqs_Windows/matrices 2024-05-29T15:35:36,639 copying funvip/external/mmseqs_Windows/matrices/PAM110.out -> build/lib/funvip/external/mmseqs_Windows/matrices 2024-05-29T15:35:36,641 copying funvip/external/mmseqs_Windows/matrices/PAM120.out -> build/lib/funvip/external/mmseqs_Windows/matrices 2024-05-29T15:35:36,643 copying funvip/external/mmseqs_Windows/matrices/PAM130.out -> build/lib/funvip/external/mmseqs_Windows/matrices 2024-05-29T15:35:36,645 copying funvip/external/mmseqs_Windows/matrices/PAM140.out -> build/lib/funvip/external/mmseqs_Windows/matrices 2024-05-29T15:35:36,648 copying funvip/external/mmseqs_Windows/matrices/PAM150.out -> build/lib/funvip/external/mmseqs_Windows/matrices 2024-05-29T15:35:36,650 copying funvip/external/mmseqs_Windows/matrices/PAM160.out -> build/lib/funvip/external/mmseqs_Windows/matrices 2024-05-29T15:35:36,652 copying funvip/external/mmseqs_Windows/matrices/PAM170.out -> build/lib/funvip/external/mmseqs_Windows/matrices 2024-05-29T15:35:36,653 copying funvip/external/mmseqs_Windows/matrices/PAM180.out -> build/lib/funvip/external/mmseqs_Windows/matrices 2024-05-29T15:35:36,655 copying funvip/external/mmseqs_Windows/matrices/PAM190.out -> build/lib/funvip/external/mmseqs_Windows/matrices 2024-05-29T15:35:36,658 copying funvip/external/mmseqs_Windows/matrices/PAM20.out -> build/lib/funvip/external/mmseqs_Windows/matrices 2024-05-29T15:35:36,660 copying funvip/external/mmseqs_Windows/matrices/PAM30.out -> build/lib/funvip/external/mmseqs_Windows/matrices 2024-05-29T15:35:36,662 copying funvip/external/mmseqs_Windows/matrices/PAM40.out -> build/lib/funvip/external/mmseqs_Windows/matrices 2024-05-29T15:35:36,663 copying funvip/external/mmseqs_Windows/matrices/PAM50.out -> build/lib/funvip/external/mmseqs_Windows/matrices 2024-05-29T15:35:36,666 copying funvip/external/mmseqs_Windows/matrices/PAM60.out -> build/lib/funvip/external/mmseqs_Windows/matrices 2024-05-29T15:35:36,667 copying funvip/external/mmseqs_Windows/matrices/PAM70.out -> build/lib/funvip/external/mmseqs_Windows/matrices 2024-05-29T15:35:36,669 copying funvip/external/mmseqs_Windows/matrices/PAM80.out -> build/lib/funvip/external/mmseqs_Windows/matrices 2024-05-29T15:35:36,671 copying funvip/external/mmseqs_Windows/matrices/PAM90.out -> build/lib/funvip/external/mmseqs_Windows/matrices 2024-05-29T15:35:36,673 copying funvip/external/mmseqs_Windows/matrices/VTML10.out -> build/lib/funvip/external/mmseqs_Windows/matrices 2024-05-29T15:35:36,675 copying funvip/external/mmseqs_Windows/matrices/VTML120.out -> build/lib/funvip/external/mmseqs_Windows/matrices 2024-05-29T15:35:36,677 copying funvip/external/mmseqs_Windows/matrices/VTML160.out -> build/lib/funvip/external/mmseqs_Windows/matrices 2024-05-29T15:35:36,679 copying funvip/external/mmseqs_Windows/matrices/VTML20.out -> build/lib/funvip/external/mmseqs_Windows/matrices 2024-05-29T15:35:36,681 copying funvip/external/mmseqs_Windows/matrices/VTML40.out -> build/lib/funvip/external/mmseqs_Windows/matrices 2024-05-29T15:35:36,683 copying funvip/external/mmseqs_Windows/matrices/VTML80.out -> build/lib/funvip/external/mmseqs_Windows/matrices 2024-05-29T15:35:36,685 copying funvip/external/mmseqs_Windows/matrices/blosum100.out -> build/lib/funvip/external/mmseqs_Windows/matrices 2024-05-29T15:35:36,687 copying funvip/external/mmseqs_Windows/matrices/blosum30.out -> build/lib/funvip/external/mmseqs_Windows/matrices 2024-05-29T15:35:36,690 copying funvip/external/mmseqs_Windows/matrices/blosum35.out -> build/lib/funvip/external/mmseqs_Windows/matrices 2024-05-29T15:35:36,692 copying funvip/external/mmseqs_Windows/matrices/blosum40.out -> build/lib/funvip/external/mmseqs_Windows/matrices 2024-05-29T15:35:36,694 copying funvip/external/mmseqs_Windows/matrices/blosum45.out -> build/lib/funvip/external/mmseqs_Windows/matrices 2024-05-29T15:35:36,696 copying funvip/external/mmseqs_Windows/matrices/blosum50.out -> build/lib/funvip/external/mmseqs_Windows/matrices 2024-05-29T15:35:36,698 copying funvip/external/mmseqs_Windows/matrices/blosum55.out -> build/lib/funvip/external/mmseqs_Windows/matrices 2024-05-29T15:35:36,700 copying funvip/external/mmseqs_Windows/matrices/blosum60.out -> build/lib/funvip/external/mmseqs_Windows/matrices 2024-05-29T15:35:36,702 copying funvip/external/mmseqs_Windows/matrices/blosum62.out -> build/lib/funvip/external/mmseqs_Windows/matrices 2024-05-29T15:35:36,705 copying funvip/external/mmseqs_Windows/matrices/blosum65.out -> build/lib/funvip/external/mmseqs_Windows/matrices 2024-05-29T15:35:36,707 copying funvip/external/mmseqs_Windows/matrices/blosum70.out -> build/lib/funvip/external/mmseqs_Windows/matrices 2024-05-29T15:35:36,709 copying funvip/external/mmseqs_Windows/matrices/blosum75.out -> build/lib/funvip/external/mmseqs_Windows/matrices 2024-05-29T15:35:36,711 copying funvip/external/mmseqs_Windows/matrices/blosum80.out -> build/lib/funvip/external/mmseqs_Windows/matrices 2024-05-29T15:35:36,713 copying funvip/external/mmseqs_Windows/matrices/blosum85.out -> build/lib/funvip/external/mmseqs_Windows/matrices 2024-05-29T15:35:36,715 copying funvip/external/mmseqs_Windows/matrices/blosum90.out -> build/lib/funvip/external/mmseqs_Windows/matrices 2024-05-29T15:35:36,717 copying funvip/external/mmseqs_Windows/matrices/blosum95.out -> build/lib/funvip/external/mmseqs_Windows/matrices 2024-05-29T15:35:36,719 copying funvip/external/mmseqs_Windows/matrices/nucleotide.out -> build/lib/funvip/external/mmseqs_Windows/matrices 2024-05-29T15:35:36,721 creating build/lib/funvip/external/mmseqs_Windows/util 2024-05-29T15:35:36,722 copying funvip/external/mmseqs_Windows/util/bash-completion.sh -> build/lib/funvip/external/mmseqs_Windows/util 2024-05-29T15:35:36,724 creating build/lib/funvip/external/trimal.v1.4 2024-05-29T15:35:36,724 creating build/lib/funvip/external/trimal.v1.4/trimAl 2024-05-29T15:35:36,725 copying funvip/external/trimal.v1.4/trimAl/AUTHORS -> build/lib/funvip/external/trimal.v1.4/trimAl 2024-05-29T15:35:36,727 copying funvip/external/trimal.v1.4/trimAl/CHANGELOG -> build/lib/funvip/external/trimal.v1.4/trimAl 2024-05-29T15:35:36,730 copying funvip/external/trimal.v1.4/trimAl/LICENSE -> build/lib/funvip/external/trimal.v1.4/trimAl 2024-05-29T15:35:36,733 copying funvip/external/trimal.v1.4/trimAl/README -> build/lib/funvip/external/trimal.v1.4/trimAl 2024-05-29T15:35:36,739 creating build/lib/funvip/external/trimal.v1.4/trimAl/bin 2024-05-29T15:35:36,740 copying funvip/external/trimal.v1.4/trimAl/bin/libgcc_s_dw2-1.dll -> build/lib/funvip/external/trimal.v1.4/trimAl/bin 2024-05-29T15:35:36,756 copying funvip/external/trimal.v1.4/trimAl/bin/libstdc++-6.dll -> build/lib/funvip/external/trimal.v1.4/trimAl/bin 2024-05-29T15:35:36,786 copying funvip/external/trimal.v1.4/trimAl/bin/trimal.exe -> build/lib/funvip/external/trimal.v1.4/trimAl/bin 2024-05-29T15:35:36,794 creating build/lib/funvip/external/trimal.v1.4/trimAl/scripts 2024-05-29T15:35:36,795 copying funvip/external/trimal.v1.4/trimAl/scripts/check_codon_alignments.py -> build/lib/funvip/external/trimal.v1.4/trimAl/scripts 2024-05-29T15:35:36,798 copying funvip/external/trimal.v1.4/trimAl/scripts/compare_trimmed_msas.sh -> build/lib/funvip/external/trimal.v1.4/trimAl/scripts 2024-05-29T15:35:36,800 copying funvip/external/trimal.v1.4/trimAl/scripts/generateRandomAlignmentsUsingAsSeedRealAlignments.py -> build/lib/funvip/external/trimal.v1.4/trimAl/scripts 2024-05-29T15:35:36,802 copying funvip/external/trimal.v1.4/trimAl/scripts/generate_trimmed_msas.sh -> build/lib/funvip/external/trimal.v1.4/trimAl/scripts 2024-05-29T15:35:36,806 copying funvip/external/trimal.v1.4/trimAl/scripts/get_sequence_representative_from_alignment.py -> build/lib/funvip/external/trimal.v1.4/trimAl/scripts 2024-05-29T15:35:36,808 copying funvip/external/trimal.v1.4/trimAl/scripts/get_sequences_gaps_ratio.py -> build/lib/funvip/external/trimal.v1.4/trimAl/scripts 2024-05-29T15:35:36,810 copying funvip/external/trimal.v1.4/trimAl/scripts/remove_shorter_sequences.py -> build/lib/funvip/external/trimal.v1.4/trimAl/scripts 2024-05-29T15:35:36,812 copying funvip/external/trimal.v1.4/trimAl/scripts/selective_trimming_for_dNdS_analyses.based_neighbours.py -> build/lib/funvip/external/trimal.v1.4/trimAl/scripts 2024-05-29T15:35:36,814 copying funvip/external/trimal.v1.4/trimAl/scripts/set_manual_boundaries.py -> build/lib/funvip/external/trimal.v1.4/trimAl/scripts 2024-05-29T15:35:36,817 creating build/lib/funvip/external/trimal.v1.4/trimAl/source 2024-05-29T15:35:36,818 copying funvip/external/trimal.v1.4/trimAl/source/alignment.cpp -> build/lib/funvip/external/trimal.v1.4/trimAl/source 2024-05-29T15:35:36,822 copying funvip/external/trimal.v1.4/trimAl/source/alignment.h -> build/lib/funvip/external/trimal.v1.4/trimAl/source 2024-05-29T15:35:36,825 copying funvip/external/trimal.v1.4/trimAl/source/alignment.o -> build/lib/funvip/external/trimal.v1.4/trimAl/source 2024-05-29T15:35:36,830 copying funvip/external/trimal.v1.4/trimAl/source/autAlignment.cpp -> build/lib/funvip/external/trimal.v1.4/trimAl/source 2024-05-29T15:35:36,833 copying funvip/external/trimal.v1.4/trimAl/source/autAlignment.o -> build/lib/funvip/external/trimal.v1.4/trimAl/source 2024-05-29T15:35:36,835 copying funvip/external/trimal.v1.4/trimAl/source/compareFiles.cpp -> build/lib/funvip/external/trimal.v1.4/trimAl/source 2024-05-29T15:35:36,838 copying funvip/external/trimal.v1.4/trimAl/source/compareFiles.h -> build/lib/funvip/external/trimal.v1.4/trimAl/source 2024-05-29T15:35:36,840 copying funvip/external/trimal.v1.4/trimAl/source/compareFiles.o -> build/lib/funvip/external/trimal.v1.4/trimAl/source 2024-05-29T15:35:36,842 copying funvip/external/trimal.v1.4/trimAl/source/defines.h -> build/lib/funvip/external/trimal.v1.4/trimAl/source 2024-05-29T15:35:36,844 copying funvip/external/trimal.v1.4/trimAl/source/main.cpp -> build/lib/funvip/external/trimal.v1.4/trimAl/source 2024-05-29T15:35:36,848 copying funvip/external/trimal.v1.4/trimAl/source/makefile -> build/lib/funvip/external/trimal.v1.4/trimAl/source 2024-05-29T15:35:36,850 copying funvip/external/trimal.v1.4/trimAl/source/makefile.MacOS -> build/lib/funvip/external/trimal.v1.4/trimAl/source 2024-05-29T15:35:36,852 copying funvip/external/trimal.v1.4/trimAl/source/readAl.cpp -> build/lib/funvip/external/trimal.v1.4/trimAl/source 2024-05-29T15:35:36,854 copying funvip/external/trimal.v1.4/trimAl/source/readal.exe -> build/lib/funvip/external/trimal.v1.4/trimAl/source 2024-05-29T15:35:36,860 copying funvip/external/trimal.v1.4/trimAl/source/rwAlignment.cpp -> build/lib/funvip/external/trimal.v1.4/trimAl/source 2024-05-29T15:35:36,864 copying funvip/external/trimal.v1.4/trimAl/source/rwAlignment.o -> build/lib/funvip/external/trimal.v1.4/trimAl/source 2024-05-29T15:35:36,868 copying funvip/external/trimal.v1.4/trimAl/source/sequencesMatrix.cpp -> build/lib/funvip/external/trimal.v1.4/trimAl/source 2024-05-29T15:35:36,870 copying funvip/external/trimal.v1.4/trimAl/source/sequencesMatrix.h -> build/lib/funvip/external/trimal.v1.4/trimAl/source 2024-05-29T15:35:36,872 copying funvip/external/trimal.v1.4/trimAl/source/sequencesMatrix.o -> build/lib/funvip/external/trimal.v1.4/trimAl/source 2024-05-29T15:35:36,874 copying funvip/external/trimal.v1.4/trimAl/source/similarityMatrix.cpp -> build/lib/funvip/external/trimal.v1.4/trimAl/source 2024-05-29T15:35:36,877 copying funvip/external/trimal.v1.4/trimAl/source/similarityMatrix.h -> build/lib/funvip/external/trimal.v1.4/trimAl/source 2024-05-29T15:35:36,879 copying funvip/external/trimal.v1.4/trimAl/source/similarityMatrix.o -> build/lib/funvip/external/trimal.v1.4/trimAl/source 2024-05-29T15:35:36,882 copying funvip/external/trimal.v1.4/trimAl/source/statAl.cpp -> build/lib/funvip/external/trimal.v1.4/trimAl/source 2024-05-29T15:35:36,884 copying funvip/external/trimal.v1.4/trimAl/source/statal.exe -> build/lib/funvip/external/trimal.v1.4/trimAl/source 2024-05-29T15:35:36,891 copying funvip/external/trimal.v1.4/trimAl/source/statisticsConservation.cpp -> build/lib/funvip/external/trimal.v1.4/trimAl/source 2024-05-29T15:35:36,894 copying funvip/external/trimal.v1.4/trimAl/source/statisticsConservation.h -> build/lib/funvip/external/trimal.v1.4/trimAl/source 2024-05-29T15:35:36,897 copying funvip/external/trimal.v1.4/trimAl/source/statisticsConservation.o -> build/lib/funvip/external/trimal.v1.4/trimAl/source 2024-05-29T15:35:36,899 copying funvip/external/trimal.v1.4/trimAl/source/statisticsFiles.cpp -> build/lib/funvip/external/trimal.v1.4/trimAl/source 2024-05-29T15:35:36,901 copying funvip/external/trimal.v1.4/trimAl/source/statisticsFiles.h -> build/lib/funvip/external/trimal.v1.4/trimAl/source 2024-05-29T15:35:36,903 copying funvip/external/trimal.v1.4/trimAl/source/statisticsGaps.cpp -> build/lib/funvip/external/trimal.v1.4/trimAl/source 2024-05-29T15:35:36,906 copying funvip/external/trimal.v1.4/trimAl/source/statisticsGaps.h -> build/lib/funvip/external/trimal.v1.4/trimAl/source 2024-05-29T15:35:36,908 copying funvip/external/trimal.v1.4/trimAl/source/statisticsGaps.o -> build/lib/funvip/external/trimal.v1.4/trimAl/source 2024-05-29T15:35:36,911 copying funvip/external/trimal.v1.4/trimAl/source/utils.cpp -> build/lib/funvip/external/trimal.v1.4/trimAl/source 2024-05-29T15:35:36,913 copying funvip/external/trimal.v1.4/trimAl/source/utils.h -> build/lib/funvip/external/trimal.v1.4/trimAl/source 2024-05-29T15:35:36,916 copying funvip/external/trimal.v1.4/trimAl/source/utils.o -> build/lib/funvip/external/trimal.v1.4/trimAl/source 2024-05-29T15:35:36,918 copying funvip/external/trimal.v1.4/trimAl/source/values.h -> build/lib/funvip/external/trimal.v1.4/trimAl/source 2024-05-29T15:35:36,921 creating build/lib/funvip/test_dataset 2024-05-29T15:35:36,921 creating build/lib/funvip/test_dataset/penicillium 2024-05-29T15:35:36,922 copying funvip/test_dataset/penicillium/Options.config -> build/lib/funvip/test_dataset/penicillium 2024-05-29T15:35:36,924 copying funvip/test_dataset/penicillium/preset.yaml -> build/lib/funvip/test_dataset/penicillium 2024-05-29T15:35:36,926 creating build/lib/funvip/test_dataset/penicillium/DB 2024-05-29T15:35:36,926 copying funvip/test_dataset/penicillium/DB/DB_Penicillium.xlsx -> build/lib/funvip/test_dataset/penicillium/DB 2024-05-29T15:35:36,934 creating build/lib/funvip/test_dataset/penicillium/Query 2024-05-29T15:35:36,935 copying funvip/test_dataset/penicillium/Query/Query.xlsx -> build/lib/funvip/test_dataset/penicillium/Query 2024-05-29T15:35:36,938 creating build/lib/funvip/test_dataset/terrei 2024-05-29T15:35:36,939 copying funvip/test_dataset/terrei/preset.yaml -> build/lib/funvip/test_dataset/terrei 2024-05-29T15:35:36,941 creating build/lib/funvip/test_dataset/terrei/DB 2024-05-29T15:35:36,942 copying funvip/test_dataset/terrei/DB/FunVIP_Aspergillus_db.xlsx -> build/lib/funvip/test_dataset/terrei/DB 2024-05-29T15:35:36,945 creating build/lib/funvip/test_dataset/terrei/Query 2024-05-29T15:35:36,946 copying funvip/test_dataset/terrei/Query/FunVIP_Aspergillus_query.xlsx -> build/lib/funvip/test_dataset/terrei/Query 2024-05-29T15:35:36,949 copying funvip/preset/.gitignore -> build/lib/funvip/preset 2024-05-29T15:35:36,961 installing to build/bdist.linux-armv7l/wheel 2024-05-29T15:35:36,961 running install 2024-05-29T15:35:36,985 running install_lib 2024-05-29T15:35:36,990 creating build/bdist.linux-armv7l 2024-05-29T15:35:36,990 creating build/bdist.linux-armv7l/wheel 2024-05-29T15:35:36,992 creating build/bdist.linux-armv7l/wheel/funvip 2024-05-29T15:35:36,993 creating build/bdist.linux-armv7l/wheel/funvip/src 2024-05-29T15:35:36,994 copying build/lib/funvip/src/.gitignore -> build/bdist.linux-armv7l/wheel/funvip/src 2024-05-29T15:35:36,996 copying build/lib/funvip/src/align.py -> build/bdist.linux-armv7l/wheel/funvip/src 2024-05-29T15:35:36,998 copying build/lib/funvip/src/cluster.py -> build/bdist.linux-armv7l/wheel/funvip/src 2024-05-29T15:35:37,001 copying build/lib/funvip/src/trim.py -> build/bdist.linux-armv7l/wheel/funvip/src 2024-05-29T15:35:37,003 copying build/lib/funvip/src/modeltest.py -> build/bdist.linux-armv7l/wheel/funvip/src 2024-05-29T15:35:37,006 copying build/lib/funvip/src/validate_input.py -> build/bdist.linux-armv7l/wheel/funvip/src 2024-05-29T15:35:37,008 copying build/lib/funvip/src/ext.py -> build/bdist.linux-armv7l/wheel/funvip/src 2024-05-29T15:35:37,011 copying build/lib/funvip/src/tree_interpretation_pipe.py -> build/bdist.linux-armv7l/wheel/funvip/src 2024-05-29T15:35:37,013 copying build/lib/funvip/src/dataset.py -> build/bdist.linux-armv7l/wheel/funvip/src 2024-05-29T15:35:37,016 copying build/lib/funvip/src/version.py -> build/bdist.linux-armv7l/wheel/funvip/src 2024-05-29T15:35:37,019 creating build/bdist.linux-armv7l/wheel/funvip/src/templates 2024-05-29T15:35:37,021 copying build/lib/funvip/src/templates/template.html -> build/bdist.linux-armv7l/wheel/funvip/src/templates 2024-05-29T15:35:37,022 copying build/lib/funvip/src/tree_interpretation.py -> build/bdist.linux-armv7l/wheel/funvip/src 2024-05-29T15:35:37,025 copying build/lib/funvip/src/hasher.py -> build/bdist.linux-armv7l/wheel/funvip/src 2024-05-29T15:35:37,027 copying build/lib/funvip/src/opt_generator.py -> build/bdist.linux-armv7l/wheel/funvip/src 2024-05-29T15:35:37,029 copying build/lib/funvip/src/concatenate.py -> build/bdist.linux-armv7l/wheel/funvip/src 2024-05-29T15:35:37,031 copying build/lib/funvip/src/validate_option.py -> build/bdist.linux-armv7l/wheel/funvip/src 2024-05-29T15:35:37,035 copying build/lib/funvip/src/tool.py -> build/bdist.linux-armv7l/wheel/funvip/src 2024-05-29T15:35:37,037 copying build/lib/funvip/src/initialize.py -> build/bdist.linux-armv7l/wheel/funvip/src 2024-05-29T15:35:37,040 copying build/lib/funvip/src/search.py -> build/bdist.linux-armv7l/wheel/funvip/src 2024-05-29T15:35:37,042 copying build/lib/funvip/src/command.py -> build/bdist.linux-armv7l/wheel/funvip/src 2024-05-29T15:35:37,045 copying build/lib/funvip/src/logger.py -> build/bdist.linux-armv7l/wheel/funvip/src 2024-05-29T15:35:37,046 copying build/lib/funvip/src/ncbi.py -> build/bdist.linux-armv7l/wheel/funvip/src 2024-05-29T15:35:37,049 copying build/lib/funvip/src/save.py -> build/bdist.linux-armv7l/wheel/funvip/src 2024-05-29T15:35:37,052 copying build/lib/funvip/src/tree.py -> build/bdist.linux-armv7l/wheel/funvip/src 2024-05-29T15:35:37,054 copying build/lib/funvip/src/reporter.py -> build/bdist.linux-armv7l/wheel/funvip/src 2024-05-29T15:35:37,059 copying build/lib/funvip/src/validation.py -> build/bdist.linux-armv7l/wheel/funvip/src 2024-05-29T15:35:37,061 copying build/lib/funvip/src/logics.py -> build/bdist.linux-armv7l/wheel/funvip/src 2024-05-29T15:35:37,063 copying build/lib/funvip/src/__init__.py -> build/bdist.linux-armv7l/wheel/funvip/src 2024-05-29T15:35:37,066 creating build/bdist.linux-armv7l/wheel/funvip/src/__pycache__ 2024-05-29T15:35:37,067 copying build/lib/funvip/src/__pycache__/io.cpython-310.pyc -> build/bdist.linux-armv7l/wheel/funvip/src/__pycache__ 2024-05-29T15:35:37,070 copying build/lib/funvip/src/__pycache__/reporter.cpython-39.pyc -> build/bdist.linux-armv7l/wheel/funvip/src/__pycache__ 2024-05-29T15:35:37,073 copying build/lib/funvip/src/__pycache__/multigene.cpython-39.pyc -> build/bdist.linux-armv7l/wheel/funvip/src/__pycache__ 2024-05-29T15:35:37,075 copying build/lib/funvip/src/__pycache__/CAT_V_pipe.cpython-39.pyc -> build/bdist.linux-armv7l/wheel/funvip/src/__pycache__ 2024-05-29T15:35:37,078 copying build/lib/funvip/src/__pycache__/ext.cpython-310.pyc -> build/bdist.linux-armv7l/wheel/funvip/src/__pycache__ 2024-05-29T15:35:37,080 copying build/lib/funvip/src/__pycache__/tool.cpython-39.pyc -> build/bdist.linux-armv7l/wheel/funvip/src/__pycache__ 2024-05-29T15:35:37,083 copying build/lib/funvip/src/__pycache__/ext.cpython-39.pyc -> build/bdist.linux-armv7l/wheel/funvip/src/__pycache__ 2024-05-29T15:35:37,086 copying build/lib/funvip/src/__pycache__/dataset.cpython-39.pyc -> build/bdist.linux-armv7l/wheel/funvip/src/__pycache__ 2024-05-29T15:35:37,089 copying build/lib/funvip/src/__pycache__/align.cpython-310.pyc -> build/bdist.linux-armv7l/wheel/funvip/src/__pycache__ 2024-05-29T15:35:37,091 copying build/lib/funvip/src/__pycache__/validation.cpython-39.pyc -> build/bdist.linux-armv7l/wheel/funvip/src/__pycache__ 2024-05-29T15:35:37,093 copying build/lib/funvip/src/__pycache__/cluster.cpython-39.pyc -> build/bdist.linux-armv7l/wheel/funvip/src/__pycache__ 2024-05-29T15:35:37,097 copying build/lib/funvip/src/__pycache__/CAT_V.cpython-39.pyc -> build/bdist.linux-armv7l/wheel/funvip/src/__pycache__ 2024-05-29T15:35:37,100 copying build/lib/funvip/src/__pycache__/__init__.cpython-39.pyc -> build/bdist.linux-armv7l/wheel/funvip/src/__pycache__ 2024-05-29T15:35:37,102 copying build/lib/funvip/src/__pycache__/CAT_V.cpython-310.pyc -> build/bdist.linux-armv7l/wheel/funvip/src/__pycache__ 2024-05-29T15:35:37,105 copying build/lib/funvip/src/__pycache__/logger.cpython-39.pyc -> build/bdist.linux-armv7l/wheel/funvip/src/__pycache__ 2024-05-29T15:35:37,108 copying build/lib/funvip/src/__pycache__/initialize.cpython-39.pyc -> build/bdist.linux-armv7l/wheel/funvip/src/__pycache__ 2024-05-29T15:35:37,111 copying build/lib/funvip/src/__pycache__/__init__.cpython-310.pyc -> build/bdist.linux-armv7l/wheel/funvip/src/__pycache__ 2024-05-29T15:35:37,113 copying build/lib/funvip/src/__pycache__/modeltest.cpython-39.pyc -> build/bdist.linux-armv7l/wheel/funvip/src/__pycache__ 2024-05-29T15:35:37,116 copying build/lib/funvip/src/__pycache__/io.cpython-39.pyc -> build/bdist.linux-armv7l/wheel/funvip/src/__pycache__ 2024-05-29T15:35:37,120 copying build/lib/funvip/src/__pycache__/CATV_pipe.cpython-310.pyc -> build/bdist.linux-armv7l/wheel/funvip/src/__pycache__ 2024-05-29T15:35:37,123 copying build/lib/funvip/src/__pycache__/search.cpython-39.pyc -> build/bdist.linux-armv7l/wheel/funvip/src/__pycache__ 2024-05-29T15:35:37,126 copying build/lib/funvip/src/__pycache__/hasher.cpython-39.pyc -> build/bdist.linux-armv7l/wheel/funvip/src/__pycache__ 2024-05-29T15:35:37,128 copying build/lib/funvip/src/__pycache__/ncbi.cpython-39.pyc -> build/bdist.linux-armv7l/wheel/funvip/src/__pycache__ 2024-05-29T15:35:37,131 copying build/lib/funvip/src/__pycache__/visualize.cpython-39.pyc -> build/bdist.linux-armv7l/wheel/funvip/src/__pycache__ 2024-05-29T15:35:37,133 copying build/lib/funvip/src/__pycache__/opt_generator.cpython-39.pyc -> build/bdist.linux-armv7l/wheel/funvip/src/__pycache__ 2024-05-29T15:35:37,137 creating build/bdist.linux-armv7l/wheel/funvip/external 2024-05-29T15:35:37,139 creating build/bdist.linux-armv7l/wheel/funvip/external/mmseqs_Windows 2024-05-29T15:35:37,142 creating build/bdist.linux-armv7l/wheel/funvip/external/mmseqs_Windows/matrices 2024-05-29T15:35:37,143 copying build/lib/funvip/external/mmseqs_Windows/matrices/blosum30.out -> build/bdist.linux-armv7l/wheel/funvip/external/mmseqs_Windows/matrices 2024-05-29T15:35:37,146 copying build/lib/funvip/external/mmseqs_Windows/matrices/PAM20.out -> build/bdist.linux-armv7l/wheel/funvip/external/mmseqs_Windows/matrices 2024-05-29T15:35:37,149 copying build/lib/funvip/external/mmseqs_Windows/matrices/blosum100.out -> build/bdist.linux-armv7l/wheel/funvip/external/mmseqs_Windows/matrices 2024-05-29T15:35:37,151 copying build/lib/funvip/external/mmseqs_Windows/matrices/blosum50.out -> build/bdist.linux-armv7l/wheel/funvip/external/mmseqs_Windows/matrices 2024-05-29T15:35:37,153 copying build/lib/funvip/external/mmseqs_Windows/matrices/PAM80.out -> build/bdist.linux-armv7l/wheel/funvip/external/mmseqs_Windows/matrices 2024-05-29T15:35:37,156 copying build/lib/funvip/external/mmseqs_Windows/matrices/PAM170.out -> build/bdist.linux-armv7l/wheel/funvip/external/mmseqs_Windows/matrices 2024-05-29T15:35:37,158 copying build/lib/funvip/external/mmseqs_Windows/matrices/PAM30.out -> build/bdist.linux-armv7l/wheel/funvip/external/mmseqs_Windows/matrices 2024-05-29T15:35:37,160 copying build/lib/funvip/external/mmseqs_Windows/matrices/PAM190.out -> build/bdist.linux-armv7l/wheel/funvip/external/mmseqs_Windows/matrices 2024-05-29T15:35:37,162 copying build/lib/funvip/external/mmseqs_Windows/matrices/VTML20.out -> build/bdist.linux-armv7l/wheel/funvip/external/mmseqs_Windows/matrices 2024-05-29T15:35:37,165 copying build/lib/funvip/external/mmseqs_Windows/matrices/PAM60.out -> build/bdist.linux-armv7l/wheel/funvip/external/mmseqs_Windows/matrices 2024-05-29T15:35:37,167 copying build/lib/funvip/external/mmseqs_Windows/matrices/VTML160.out -> build/bdist.linux-armv7l/wheel/funvip/external/mmseqs_Windows/matrices 2024-05-29T15:35:37,169 copying build/lib/funvip/external/mmseqs_Windows/matrices/blosum85.out -> build/bdist.linux-armv7l/wheel/funvip/external/mmseqs_Windows/matrices 2024-05-29T15:35:37,171 copying build/lib/funvip/external/mmseqs_Windows/matrices/PAM70.out -> build/bdist.linux-armv7l/wheel/funvip/external/mmseqs_Windows/matrices 2024-05-29T15:35:37,173 copying build/lib/funvip/external/mmseqs_Windows/matrices/nucleotide.out -> build/bdist.linux-armv7l/wheel/funvip/external/mmseqs_Windows/matrices 2024-05-29T15:35:37,175 copying build/lib/funvip/external/mmseqs_Windows/matrices/PAM40.out -> build/bdist.linux-armv7l/wheel/funvip/external/mmseqs_Windows/matrices 2024-05-29T15:35:37,178 copying build/lib/funvip/external/mmseqs_Windows/matrices/VTML120.out -> build/bdist.linux-armv7l/wheel/funvip/external/mmseqs_Windows/matrices 2024-05-29T15:35:37,180 copying build/lib/funvip/external/mmseqs_Windows/matrices/PAM90.out -> build/bdist.linux-armv7l/wheel/funvip/external/mmseqs_Windows/matrices 2024-05-29T15:35:37,183 copying build/lib/funvip/external/mmseqs_Windows/matrices/PAM140.out -> build/bdist.linux-armv7l/wheel/funvip/external/mmseqs_Windows/matrices 2024-05-29T15:35:37,185 copying build/lib/funvip/external/mmseqs_Windows/matrices/PAM150.out -> build/bdist.linux-armv7l/wheel/funvip/external/mmseqs_Windows/matrices 2024-05-29T15:35:37,187 copying build/lib/funvip/external/mmseqs_Windows/matrices/PAM130.out -> build/bdist.linux-armv7l/wheel/funvip/external/mmseqs_Windows/matrices 2024-05-29T15:35:37,189 copying build/lib/funvip/external/mmseqs_Windows/matrices/blosum80.out -> build/bdist.linux-armv7l/wheel/funvip/external/mmseqs_Windows/matrices 2024-05-29T15:35:37,191 copying build/lib/funvip/external/mmseqs_Windows/matrices/PAM160.out -> build/bdist.linux-armv7l/wheel/funvip/external/mmseqs_Windows/matrices 2024-05-29T15:35:37,193 copying build/lib/funvip/external/mmseqs_Windows/matrices/blosum65.out -> build/bdist.linux-armv7l/wheel/funvip/external/mmseqs_Windows/matrices 2024-05-29T15:35:37,195 copying build/lib/funvip/external/mmseqs_Windows/matrices/blosum40.out -> build/bdist.linux-armv7l/wheel/funvip/external/mmseqs_Windows/matrices 2024-05-29T15:35:37,197 copying build/lib/funvip/external/mmseqs_Windows/matrices/blosum90.out -> build/bdist.linux-armv7l/wheel/funvip/external/mmseqs_Windows/matrices 2024-05-29T15:35:37,199 copying build/lib/funvip/external/mmseqs_Windows/matrices/PAM100.out -> build/bdist.linux-armv7l/wheel/funvip/external/mmseqs_Windows/matrices 2024-05-29T15:35:37,202 copying build/lib/funvip/external/mmseqs_Windows/matrices/blosum70.out -> build/bdist.linux-armv7l/wheel/funvip/external/mmseqs_Windows/matrices 2024-05-29T15:35:37,204 copying build/lib/funvip/external/mmseqs_Windows/matrices/blosum62.out -> build/bdist.linux-armv7l/wheel/funvip/external/mmseqs_Windows/matrices 2024-05-29T15:35:37,206 copying build/lib/funvip/external/mmseqs_Windows/matrices/PAM180.out -> build/bdist.linux-armv7l/wheel/funvip/external/mmseqs_Windows/matrices 2024-05-29T15:35:37,208 copying build/lib/funvip/external/mmseqs_Windows/matrices/PAM10.out -> build/bdist.linux-armv7l/wheel/funvip/external/mmseqs_Windows/matrices 2024-05-29T15:35:37,211 copying build/lib/funvip/external/mmseqs_Windows/matrices/blosum55.out -> build/bdist.linux-armv7l/wheel/funvip/external/mmseqs_Windows/matrices 2024-05-29T15:35:37,213 copying build/lib/funvip/external/mmseqs_Windows/matrices/VTML40.out -> build/bdist.linux-armv7l/wheel/funvip/external/mmseqs_Windows/matrices 2024-05-29T15:35:37,215 copying build/lib/funvip/external/mmseqs_Windows/matrices/PAM120.out -> build/bdist.linux-armv7l/wheel/funvip/external/mmseqs_Windows/matrices 2024-05-29T15:35:37,217 copying build/lib/funvip/external/mmseqs_Windows/matrices/blosum75.out -> build/bdist.linux-armv7l/wheel/funvip/external/mmseqs_Windows/matrices 2024-05-29T15:35:37,219 copying build/lib/funvip/external/mmseqs_Windows/matrices/blosum45.out -> build/bdist.linux-armv7l/wheel/funvip/external/mmseqs_Windows/matrices 2024-05-29T15:35:37,222 copying build/lib/funvip/external/mmseqs_Windows/matrices/VTML80.out -> build/bdist.linux-armv7l/wheel/funvip/external/mmseqs_Windows/matrices 2024-05-29T15:35:37,224 copying build/lib/funvip/external/mmseqs_Windows/matrices/VTML10.out -> build/bdist.linux-armv7l/wheel/funvip/external/mmseqs_Windows/matrices 2024-05-29T15:35:37,226 copying build/lib/funvip/external/mmseqs_Windows/matrices/PAM110.out -> build/bdist.linux-armv7l/wheel/funvip/external/mmseqs_Windows/matrices 2024-05-29T15:35:37,229 copying build/lib/funvip/external/mmseqs_Windows/matrices/blosum35.out -> build/bdist.linux-armv7l/wheel/funvip/external/mmseqs_Windows/matrices 2024-05-29T15:35:37,231 copying build/lib/funvip/external/mmseqs_Windows/matrices/blosum60.out -> build/bdist.linux-armv7l/wheel/funvip/external/mmseqs_Windows/matrices 2024-05-29T15:35:37,233 copying build/lib/funvip/external/mmseqs_Windows/matrices/blosum95.out -> build/bdist.linux-armv7l/wheel/funvip/external/mmseqs_Windows/matrices 2024-05-29T15:35:37,236 copying build/lib/funvip/external/mmseqs_Windows/matrices/PAM50.out -> build/bdist.linux-armv7l/wheel/funvip/external/mmseqs_Windows/matrices 2024-05-29T15:35:37,238 copying build/lib/funvip/external/mmseqs_Windows/mmseqs.bat -> build/bdist.linux-armv7l/wheel/funvip/external/mmseqs_Windows 2024-05-29T15:35:37,240 creating build/bdist.linux-armv7l/wheel/funvip/external/mmseqs_Windows/util 2024-05-29T15:35:37,241 copying build/lib/funvip/external/mmseqs_Windows/util/bash-completion.sh -> build/bdist.linux-armv7l/wheel/funvip/external/mmseqs_Windows/util 2024-05-29T15:35:37,244 creating build/bdist.linux-armv7l/wheel/funvip/external/mmseqs_Windows/examples 2024-05-29T15:35:37,245 copying build/lib/funvip/external/mmseqs_Windows/examples/QUERY.fasta -> build/bdist.linux-armv7l/wheel/funvip/external/mmseqs_Windows/examples 2024-05-29T15:35:37,253 creating build/bdist.linux-armv7l/wheel/funvip/external/mmseqs_Windows/bin 2024-05-29T15:35:37,254 copying build/lib/funvip/external/mmseqs_Windows/bin/cygwin1.dll -> build/bdist.linux-armv7l/wheel/funvip/external/mmseqs_Windows/bin 2024-05-29T15:35:37,309 copying build/lib/funvip/external/mmseqs_Windows/bin/cyggcc_s-seh-1.dll -> build/bdist.linux-armv7l/wheel/funvip/external/mmseqs_Windows/bin 2024-05-29T15:35:37,313 copying build/lib/funvip/external/mmseqs_Windows/bin/cygbz2-1.dll -> build/bdist.linux-armv7l/wheel/funvip/external/mmseqs_Windows/bin 2024-05-29T15:35:37,316 copying build/lib/funvip/external/mmseqs_Windows/bin/cygz.dll -> build/bdist.linux-armv7l/wheel/funvip/external/mmseqs_Windows/bin 2024-05-29T15:35:37,320 copying build/lib/funvip/external/mmseqs_Windows/bin/cygstdc++-6.dll -> build/bdist.linux-armv7l/wheel/funvip/external/mmseqs_Windows/bin 2024-05-29T15:35:37,353 copying build/lib/funvip/external/mmseqs_Windows/bin/mmseqs.exe -> build/bdist.linux-armv7l/wheel/funvip/external/mmseqs_Windows/bin 2024-05-29T15:35:37,534 copying build/lib/funvip/external/mmseqs_Windows/bin/busybox.exe -> build/bdist.linux-armv7l/wheel/funvip/external/mmseqs_Windows/bin 2024-05-29T15:35:37,547 copying build/lib/funvip/external/mmseqs_Windows/bin/cyggomp-1.dll -> build/bdist.linux-armv7l/wheel/funvip/external/mmseqs_Windows/bin 2024-05-29T15:35:37,553 copying build/lib/funvip/external/mmseqs_Windows/README.md -> build/bdist.linux-armv7l/wheel/funvip/external/mmseqs_Windows 2024-05-29T15:35:37,556 copying build/lib/funvip/external/mmseqs_Windows/LICENSE.md -> build/bdist.linux-armv7l/wheel/funvip/external/mmseqs_Windows 2024-05-29T15:35:37,560 creating build/bdist.linux-armv7l/wheel/funvip/external/FastTree_Windows 2024-05-29T15:35:37,561 copying build/lib/funvip/external/FastTree_Windows/FastTree.exe -> build/bdist.linux-armv7l/wheel/funvip/external/FastTree_Windows 2024-05-29T15:35:37,568 copying build/lib/funvip/external/MAFFT_Windows.zip -> build/bdist.linux-armv7l/wheel/funvip/external 2024-05-29T15:35:37,995 creating build/bdist.linux-armv7l/wheel/funvip/external/iqtree 2024-05-29T15:35:37,996 copying build/lib/funvip/external/iqtree/example.phy -> build/bdist.linux-armv7l/wheel/funvip/external/iqtree 2024-05-29T15:35:37,999 copying build/lib/funvip/external/iqtree/example.cf -> build/bdist.linux-armv7l/wheel/funvip/external/iqtree 2024-05-29T15:35:38,038 copying build/lib/funvip/external/iqtree/example.nex -> build/bdist.linux-armv7l/wheel/funvip/external/iqtree 2024-05-29T15:35:38,040 creating build/bdist.linux-armv7l/wheel/funvip/external/iqtree/bin 2024-05-29T15:35:38,041 copying build/lib/funvip/external/iqtree/bin/libiomp5md.dll -> build/bdist.linux-armv7l/wheel/funvip/external/iqtree/bin 2024-05-29T15:35:38,061 copying build/lib/funvip/external/iqtree/bin/iqtree2-click.exe -> build/bdist.linux-armv7l/wheel/funvip/external/iqtree/bin 2024-05-29T15:35:38,226 copying build/lib/funvip/external/iqtree/bin/iqtree2.exe -> build/bdist.linux-armv7l/wheel/funvip/external/iqtree/bin 2024-05-29T15:35:38,430 copying build/lib/funvip/external/iqtree/models.nex -> build/bdist.linux-armv7l/wheel/funvip/external/iqtree 2024-05-29T15:35:38,434 creating build/bdist.linux-armv7l/wheel/funvip/external/Gblocks_Windows_0.91b 2024-05-29T15:35:38,435 creating build/bdist.linux-armv7l/wheel/funvip/external/Gblocks_Windows_0.91b/Gblocks_0.91b 2024-05-29T15:35:38,437 creating build/bdist.linux-armv7l/wheel/funvip/external/Gblocks_Windows_0.91b/Gblocks_0.91b/Documentation 2024-05-29T15:35:38,438 copying build/lib/funvip/external/Gblocks_Windows_0.91b/Gblocks_0.91b/Documentation/Gblocks_documentation.html -> build/bdist.linux-armv7l/wheel/funvip/external/Gblocks_Windows_0.91b/Gblocks_0.91b/Documentation 2024-05-29T15:35:38,441 copying build/lib/funvip/external/Gblocks_Windows_0.91b/Gblocks_0.91b/Gblocks.exe -> build/bdist.linux-armv7l/wheel/funvip/external/Gblocks_Windows_0.91b/Gblocks_0.91b 2024-05-29T15:35:38,446 copying build/lib/funvip/external/Gblocks_Windows_0.91b/Gblocks_0.91b/nad3.pir -> build/bdist.linux-armv7l/wheel/funvip/external/Gblocks_Windows_0.91b/Gblocks_0.91b 2024-05-29T15:35:38,448 copying build/lib/funvip/external/Gblocks_Windows_0.91b/Gblocks_0.91b/paths -> build/bdist.linux-armv7l/wheel/funvip/external/Gblocks_Windows_0.91b/Gblocks_0.91b 2024-05-29T15:35:38,450 creating build/bdist.linux-armv7l/wheel/funvip/external/Gblocks_Windows_0.91b/Gblocks_0.91b/more_alignments 2024-05-29T15:35:38,451 copying build/lib/funvip/external/Gblocks_Windows_0.91b/Gblocks_0.91b/more_alignments/cytb.pir -> build/bdist.linux-armv7l/wheel/funvip/external/Gblocks_Windows_0.91b/Gblocks_0.91b/more_alignments 2024-05-29T15:35:38,454 copying build/lib/funvip/external/Gblocks_Windows_0.91b/Gblocks_0.91b/more_alignments/nad3.pir -> build/bdist.linux-armv7l/wheel/funvip/external/Gblocks_Windows_0.91b/Gblocks_0.91b/more_alignments 2024-05-29T15:35:38,456 copying build/lib/funvip/external/Gblocks_Windows_0.91b/Gblocks_0.91b/more_alignments/cox2.pir -> build/bdist.linux-armv7l/wheel/funvip/external/Gblocks_Windows_0.91b/Gblocks_0.91b/more_alignments 2024-05-29T15:35:38,458 copying build/lib/funvip/external/Gblocks_Windows_0.91b/Gblocks_0.91b/more_alignments/nad5.pir -> build/bdist.linux-armv7l/wheel/funvip/external/Gblocks_Windows_0.91b/Gblocks_0.91b/more_alignments 2024-05-29T15:35:38,461 copying build/lib/funvip/external/MAFFT_LICENSE -> build/bdist.linux-armv7l/wheel/funvip/external 2024-05-29T15:35:38,464 creating build/bdist.linux-armv7l/wheel/funvip/external/BLAST_Windows 2024-05-29T15:35:38,465 copying build/lib/funvip/external/BLAST_Windows/Uninstall-ncbi-blast-2.12.0+.exe -> build/bdist.linux-armv7l/wheel/funvip/external/BLAST_Windows 2024-05-29T15:35:38,469 creating build/bdist.linux-armv7l/wheel/funvip/external/BLAST_Windows/bin 2024-05-29T15:35:38,470 copying build/lib/funvip/external/BLAST_Windows/bin/get_species_taxids.sh -> build/bdist.linux-armv7l/wheel/funvip/external/BLAST_Windows/bin 2024-05-29T15:35:38,472 copying build/lib/funvip/external/BLAST_Windows/bin/update_blastdb.pl -> build/bdist.linux-armv7l/wheel/funvip/external/BLAST_Windows/bin 2024-05-29T15:35:38,475 copying build/lib/funvip/external/BLAST_Windows/bin/makeblastdb.exe -> build/bdist.linux-armv7l/wheel/funvip/external/BLAST_Windows/bin 2024-05-29T15:35:38,679 copying build/lib/funvip/external/BLAST_Windows/bin/blastn.exe -> build/bdist.linux-armv7l/wheel/funvip/external/BLAST_Windows/bin 2024-05-29T15:35:38,947 copying build/lib/funvip/external/BLAST_Windows/bin/cleanup-blastdb-volumes.py -> build/bdist.linux-armv7l/wheel/funvip/external/BLAST_Windows/bin 2024-05-29T15:35:38,950 copying build/lib/funvip/external/BLAST_Windows/bin/legacy_blast.pl -> build/bdist.linux-armv7l/wheel/funvip/external/BLAST_Windows/bin 2024-05-29T15:35:38,953 copying build/lib/funvip/external/BLAST_Windows/bin/nghttp2.dll -> build/bdist.linux-armv7l/wheel/funvip/external/BLAST_Windows/bin 2024-05-29T15:35:38,958 creating build/bdist.linux-armv7l/wheel/funvip/external/BLAST_Windows/doc 2024-05-29T15:35:38,959 copying build/lib/funvip/external/BLAST_Windows/doc/README.txt -> build/bdist.linux-armv7l/wheel/funvip/external/BLAST_Windows/doc 2024-05-29T15:35:38,962 creating build/bdist.linux-armv7l/wheel/funvip/external/trimal.v1.4 2024-05-29T15:35:38,963 creating build/bdist.linux-armv7l/wheel/funvip/external/trimal.v1.4/trimAl 2024-05-29T15:35:38,964 copying build/lib/funvip/external/trimal.v1.4/trimAl/README -> build/bdist.linux-armv7l/wheel/funvip/external/trimal.v1.4/trimAl 2024-05-29T15:35:38,966 copying build/lib/funvip/external/trimal.v1.4/trimAl/AUTHORS -> build/bdist.linux-armv7l/wheel/funvip/external/trimal.v1.4/trimAl 2024-05-29T15:35:38,967 copying build/lib/funvip/external/trimal.v1.4/trimAl/LICENSE -> build/bdist.linux-armv7l/wheel/funvip/external/trimal.v1.4/trimAl 2024-05-29T15:35:38,971 creating build/bdist.linux-armv7l/wheel/funvip/external/trimal.v1.4/trimAl/scripts 2024-05-29T15:35:38,972 copying build/lib/funvip/external/trimal.v1.4/trimAl/scripts/compare_trimmed_msas.sh -> build/bdist.linux-armv7l/wheel/funvip/external/trimal.v1.4/trimAl/scripts 2024-05-29T15:35:38,973 copying build/lib/funvip/external/trimal.v1.4/trimAl/scripts/check_codon_alignments.py -> build/bdist.linux-armv7l/wheel/funvip/external/trimal.v1.4/trimAl/scripts 2024-05-29T15:35:38,975 copying build/lib/funvip/external/trimal.v1.4/trimAl/scripts/generate_trimmed_msas.sh -> build/bdist.linux-armv7l/wheel/funvip/external/trimal.v1.4/trimAl/scripts 2024-05-29T15:35:38,979 copying build/lib/funvip/external/trimal.v1.4/trimAl/scripts/get_sequences_gaps_ratio.py -> build/bdist.linux-armv7l/wheel/funvip/external/trimal.v1.4/trimAl/scripts 2024-05-29T15:35:38,981 copying build/lib/funvip/external/trimal.v1.4/trimAl/scripts/selective_trimming_for_dNdS_analyses.based_neighbours.py -> build/bdist.linux-armv7l/wheel/funvip/external/trimal.v1.4/trimAl/scripts 2024-05-29T15:35:38,984 copying build/lib/funvip/external/trimal.v1.4/trimAl/scripts/set_manual_boundaries.py -> build/bdist.linux-armv7l/wheel/funvip/external/trimal.v1.4/trimAl/scripts 2024-05-29T15:35:38,986 copying build/lib/funvip/external/trimal.v1.4/trimAl/scripts/generateRandomAlignmentsUsingAsSeedRealAlignments.py -> build/bdist.linux-armv7l/wheel/funvip/external/trimal.v1.4/trimAl/scripts 2024-05-29T15:35:38,988 copying build/lib/funvip/external/trimal.v1.4/trimAl/scripts/get_sequence_representative_from_alignment.py -> build/bdist.linux-armv7l/wheel/funvip/external/trimal.v1.4/trimAl/scripts 2024-05-29T15:35:38,990 copying build/lib/funvip/external/trimal.v1.4/trimAl/scripts/remove_shorter_sequences.py -> build/bdist.linux-armv7l/wheel/funvip/external/trimal.v1.4/trimAl/scripts 2024-05-29T15:35:38,993 creating build/bdist.linux-armv7l/wheel/funvip/external/trimal.v1.4/trimAl/source 2024-05-29T15:35:38,994 copying build/lib/funvip/external/trimal.v1.4/trimAl/source/makefile.MacOS -> build/bdist.linux-armv7l/wheel/funvip/external/trimal.v1.4/trimAl/source 2024-05-29T15:35:38,996 copying build/lib/funvip/external/trimal.v1.4/trimAl/source/sequencesMatrix.cpp -> build/bdist.linux-armv7l/wheel/funvip/external/trimal.v1.4/trimAl/source 2024-05-29T15:35:38,998 copying build/lib/funvip/external/trimal.v1.4/trimAl/source/utils.cpp -> build/bdist.linux-armv7l/wheel/funvip/external/trimal.v1.4/trimAl/source 2024-05-29T15:35:39,001 copying build/lib/funvip/external/trimal.v1.4/trimAl/source/rwAlignment.o -> build/bdist.linux-armv7l/wheel/funvip/external/trimal.v1.4/trimAl/source 2024-05-29T15:35:39,004 copying build/lib/funvip/external/trimal.v1.4/trimAl/source/statisticsGaps.h -> build/bdist.linux-armv7l/wheel/funvip/external/trimal.v1.4/trimAl/source 2024-05-29T15:35:39,006 copying build/lib/funvip/external/trimal.v1.4/trimAl/source/utils.h -> build/bdist.linux-armv7l/wheel/funvip/external/trimal.v1.4/trimAl/source 2024-05-29T15:35:39,009 copying build/lib/funvip/external/trimal.v1.4/trimAl/source/defines.h -> build/bdist.linux-armv7l/wheel/funvip/external/trimal.v1.4/trimAl/source 2024-05-29T15:35:39,011 copying build/lib/funvip/external/trimal.v1.4/trimAl/source/similarityMatrix.h -> build/bdist.linux-armv7l/wheel/funvip/external/trimal.v1.4/trimAl/source 2024-05-29T15:35:39,013 copying build/lib/funvip/external/trimal.v1.4/trimAl/source/statisticsConservation.cpp -> build/bdist.linux-armv7l/wheel/funvip/external/trimal.v1.4/trimAl/source 2024-05-29T15:35:39,015 copying build/lib/funvip/external/trimal.v1.4/trimAl/source/statisticsConservation.h -> build/bdist.linux-armv7l/wheel/funvip/external/trimal.v1.4/trimAl/source 2024-05-29T15:35:39,017 copying build/lib/funvip/external/trimal.v1.4/trimAl/source/compareFiles.h -> build/bdist.linux-armv7l/wheel/funvip/external/trimal.v1.4/trimAl/source 2024-05-29T15:35:39,019 copying build/lib/funvip/external/trimal.v1.4/trimAl/source/readAl.cpp -> build/bdist.linux-armv7l/wheel/funvip/external/trimal.v1.4/trimAl/source 2024-05-29T15:35:39,021 copying build/lib/funvip/external/trimal.v1.4/trimAl/source/main.cpp -> build/bdist.linux-armv7l/wheel/funvip/external/trimal.v1.4/trimAl/source 2024-05-29T15:35:39,025 copying build/lib/funvip/external/trimal.v1.4/trimAl/source/autAlignment.cpp -> build/bdist.linux-armv7l/wheel/funvip/external/trimal.v1.4/trimAl/source 2024-05-29T15:35:39,027 copying build/lib/funvip/external/trimal.v1.4/trimAl/source/statisticsGaps.cpp -> build/bdist.linux-armv7l/wheel/funvip/external/trimal.v1.4/trimAl/source 2024-05-29T15:35:39,030 copying build/lib/funvip/external/trimal.v1.4/trimAl/source/compareFiles.cpp -> build/bdist.linux-armv7l/wheel/funvip/external/trimal.v1.4/trimAl/source 2024-05-29T15:35:39,032 copying build/lib/funvip/external/trimal.v1.4/trimAl/source/sequencesMatrix.h -> build/bdist.linux-armv7l/wheel/funvip/external/trimal.v1.4/trimAl/source 2024-05-29T15:35:39,034 copying build/lib/funvip/external/trimal.v1.4/trimAl/source/statisticsGaps.o -> build/bdist.linux-armv7l/wheel/funvip/external/trimal.v1.4/trimAl/source 2024-05-29T15:35:39,037 copying build/lib/funvip/external/trimal.v1.4/trimAl/source/alignment.h -> build/bdist.linux-armv7l/wheel/funvip/external/trimal.v1.4/trimAl/source 2024-05-29T15:35:39,040 copying build/lib/funvip/external/trimal.v1.4/trimAl/source/statisticsConservation.o -> build/bdist.linux-armv7l/wheel/funvip/external/trimal.v1.4/trimAl/source 2024-05-29T15:35:39,043 copying build/lib/funvip/external/trimal.v1.4/trimAl/source/similarityMatrix.cpp -> build/bdist.linux-armv7l/wheel/funvip/external/trimal.v1.4/trimAl/source 2024-05-29T15:35:39,046 copying build/lib/funvip/external/trimal.v1.4/trimAl/source/statAl.cpp -> build/bdist.linux-armv7l/wheel/funvip/external/trimal.v1.4/trimAl/source 2024-05-29T15:35:39,049 copying build/lib/funvip/external/trimal.v1.4/trimAl/source/readal.exe -> build/bdist.linux-armv7l/wheel/funvip/external/trimal.v1.4/trimAl/source 2024-05-29T15:35:39,055 copying build/lib/funvip/external/trimal.v1.4/trimAl/source/utils.o -> build/bdist.linux-armv7l/wheel/funvip/external/trimal.v1.4/trimAl/source 2024-05-29T15:35:39,057 copying build/lib/funvip/external/trimal.v1.4/trimAl/source/autAlignment.o -> build/bdist.linux-armv7l/wheel/funvip/external/trimal.v1.4/trimAl/source 2024-05-29T15:35:39,060 copying build/lib/funvip/external/trimal.v1.4/trimAl/source/values.h -> build/bdist.linux-armv7l/wheel/funvip/external/trimal.v1.4/trimAl/source 2024-05-29T15:35:39,062 copying build/lib/funvip/external/trimal.v1.4/trimAl/source/makefile -> build/bdist.linux-armv7l/wheel/funvip/external/trimal.v1.4/trimAl/source 2024-05-29T15:35:39,064 copying build/lib/funvip/external/trimal.v1.4/trimAl/source/rwAlignment.cpp -> build/bdist.linux-armv7l/wheel/funvip/external/trimal.v1.4/trimAl/source 2024-05-29T15:35:39,067 copying build/lib/funvip/external/trimal.v1.4/trimAl/source/alignment.cpp -> build/bdist.linux-armv7l/wheel/funvip/external/trimal.v1.4/trimAl/source 2024-05-29T15:35:39,072 copying build/lib/funvip/external/trimal.v1.4/trimAl/source/alignment.o -> build/bdist.linux-armv7l/wheel/funvip/external/trimal.v1.4/trimAl/source 2024-05-29T15:35:39,077 copying build/lib/funvip/external/trimal.v1.4/trimAl/source/statisticsFiles.h -> build/bdist.linux-armv7l/wheel/funvip/external/trimal.v1.4/trimAl/source 2024-05-29T15:35:39,079 copying build/lib/funvip/external/trimal.v1.4/trimAl/source/sequencesMatrix.o -> build/bdist.linux-armv7l/wheel/funvip/external/trimal.v1.4/trimAl/source 2024-05-29T15:35:39,081 copying build/lib/funvip/external/trimal.v1.4/trimAl/source/compareFiles.o -> build/bdist.linux-armv7l/wheel/funvip/external/trimal.v1.4/trimAl/source 2024-05-29T15:35:39,084 copying build/lib/funvip/external/trimal.v1.4/trimAl/source/statisticsFiles.cpp -> build/bdist.linux-armv7l/wheel/funvip/external/trimal.v1.4/trimAl/source 2024-05-29T15:35:39,087 copying build/lib/funvip/external/trimal.v1.4/trimAl/source/similarityMatrix.o -> build/bdist.linux-armv7l/wheel/funvip/external/trimal.v1.4/trimAl/source 2024-05-29T15:35:39,090 copying build/lib/funvip/external/trimal.v1.4/trimAl/source/statal.exe -> build/bdist.linux-armv7l/wheel/funvip/external/trimal.v1.4/trimAl/source 2024-05-29T15:35:39,097 copying build/lib/funvip/external/trimal.v1.4/trimAl/CHANGELOG -> build/bdist.linux-armv7l/wheel/funvip/external/trimal.v1.4/trimAl 2024-05-29T15:35:39,100 creating build/bdist.linux-armv7l/wheel/funvip/external/trimal.v1.4/trimAl/bin 2024-05-29T15:35:39,101 copying build/lib/funvip/external/trimal.v1.4/trimAl/bin/libgcc_s_dw2-1.dll -> build/bdist.linux-armv7l/wheel/funvip/external/trimal.v1.4/trimAl/bin 2024-05-29T15:35:39,117 copying build/lib/funvip/external/trimal.v1.4/trimAl/bin/libstdc++-6.dll -> build/bdist.linux-armv7l/wheel/funvip/external/trimal.v1.4/trimAl/bin 2024-05-29T15:35:39,146 copying build/lib/funvip/external/trimal.v1.4/trimAl/bin/trimal.exe -> build/bdist.linux-armv7l/wheel/funvip/external/trimal.v1.4/trimAl/bin 2024-05-29T15:35:39,154 creating build/bdist.linux-armv7l/wheel/funvip/external/RAxML_Windows 2024-05-29T15:35:39,155 copying build/lib/funvip/external/RAxML_Windows/README -> build/bdist.linux-armv7l/wheel/funvip/external/RAxML_Windows 2024-05-29T15:35:39,157 copying build/lib/funvip/external/RAxML_Windows/raxmlHPC-PTHREADS-AVX2.exe -> build/bdist.linux-armv7l/wheel/funvip/external/RAxML_Windows 2024-05-29T15:35:39,183 copying build/lib/funvip/external/RAxML_Windows/GPL-3.0.txt -> build/bdist.linux-armv7l/wheel/funvip/external/RAxML_Windows 2024-05-29T15:35:39,186 copying build/lib/funvip/external/__init__.py -> build/bdist.linux-armv7l/wheel/funvip/external 2024-05-29T15:35:39,188 creating build/bdist.linux-armv7l/wheel/funvip/test_dataset 2024-05-29T15:35:39,189 creating build/bdist.linux-armv7l/wheel/funvip/test_dataset/penicillium 2024-05-29T15:35:39,190 copying build/lib/funvip/test_dataset/penicillium/Options.config -> build/bdist.linux-armv7l/wheel/funvip/test_dataset/penicillium 2024-05-29T15:35:39,192 creating build/bdist.linux-armv7l/wheel/funvip/test_dataset/penicillium/DB 2024-05-29T15:35:39,193 copying build/lib/funvip/test_dataset/penicillium/DB/DB_Penicillium.xlsx -> build/bdist.linux-armv7l/wheel/funvip/test_dataset/penicillium/DB 2024-05-29T15:35:39,202 copying build/lib/funvip/test_dataset/penicillium/preset.yaml -> build/bdist.linux-armv7l/wheel/funvip/test_dataset/penicillium 2024-05-29T15:35:39,204 creating build/bdist.linux-armv7l/wheel/funvip/test_dataset/penicillium/Query 2024-05-29T15:35:39,205 copying build/lib/funvip/test_dataset/penicillium/Query/Query.xlsx -> build/bdist.linux-armv7l/wheel/funvip/test_dataset/penicillium/Query 2024-05-29T15:35:39,209 creating build/bdist.linux-armv7l/wheel/funvip/test_dataset/terrei 2024-05-29T15:35:39,210 creating build/bdist.linux-armv7l/wheel/funvip/test_dataset/terrei/DB 2024-05-29T15:35:39,211 copying build/lib/funvip/test_dataset/terrei/DB/FunVIP_Aspergillus_db.xlsx -> build/bdist.linux-armv7l/wheel/funvip/test_dataset/terrei/DB 2024-05-29T15:35:39,214 copying build/lib/funvip/test_dataset/terrei/preset.yaml -> build/bdist.linux-armv7l/wheel/funvip/test_dataset/terrei 2024-05-29T15:35:39,216 creating build/bdist.linux-armv7l/wheel/funvip/test_dataset/terrei/Query 2024-05-29T15:35:39,217 copying build/lib/funvip/test_dataset/terrei/Query/FunVIP_Aspergillus_query.xlsx -> build/bdist.linux-armv7l/wheel/funvip/test_dataset/terrei/Query 2024-05-29T15:35:39,220 copying build/lib/funvip/main.py -> build/bdist.linux-armv7l/wheel/funvip 2024-05-29T15:35:39,223 creating build/bdist.linux-armv7l/wheel/funvip/data 2024-05-29T15:35:39,224 copying build/lib/funvip/data/Option_manager.xlsx -> build/bdist.linux-armv7l/wheel/funvip/data 2024-05-29T15:35:39,226 copying build/lib/funvip/data/genus_line.txt -> build/bdist.linux-armv7l/wheel/funvip/data 2024-05-29T15:35:39,229 copying build/lib/funvip/data/__init__.py -> build/bdist.linux-armv7l/wheel/funvip/data 2024-05-29T15:35:39,231 creating build/bdist.linux-armv7l/wheel/funvip/preset 2024-05-29T15:35:39,232 copying build/lib/funvip/preset/.gitignore -> build/bdist.linux-armv7l/wheel/funvip/preset 2024-05-29T15:35:39,233 copying build/lib/funvip/preset/accurate.yaml -> build/bdist.linux-armv7l/wheel/funvip/preset 2024-05-29T15:35:39,235 copying build/lib/funvip/preset/fast.yaml -> build/bdist.linux-armv7l/wheel/funvip/preset 2024-05-29T15:35:39,236 copying build/lib/funvip/FunVIP_GUI.py -> build/bdist.linux-armv7l/wheel/funvip 2024-05-29T15:35:39,239 copying build/lib/funvip/__init__.py -> build/bdist.linux-armv7l/wheel/funvip 2024-05-29T15:35:39,240 running install_egg_info 2024-05-29T15:35:39,244 Copying FunVIP.egg-info to build/bdist.linux-armv7l/wheel/FunVIP-0.3.23-py3.11.egg-info 2024-05-29T15:35:39,255 running install_scripts 2024-05-29T15:35:39,274 creating build/bdist.linux-armv7l/wheel/FunVIP-0.3.23.dist-info/WHEEL 2024-05-29T15:35:39,276 creating '/tmp/pip-wheel-_q8pby4w/.tmp-9egy4hx6/FunVIP-0.3.23-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2024-05-29T15:35:39,280 adding 'funvip/FunVIP_GUI.py' 2024-05-29T15:35:39,281 adding 'funvip/__init__.py' 2024-05-29T15:35:39,283 adding 'funvip/main.py' 2024-05-29T15:35:39,287 adding 'funvip/data/Option_manager.xlsx' 2024-05-29T15:35:39,288 adding 'funvip/data/__init__.py' 2024-05-29T15:35:39,296 adding 'funvip/data/genus_line.txt' 2024-05-29T15:35:39,303 adding 'funvip/external/MAFFT_LICENSE' 2024-05-29T15:35:42,365 adding 'funvip/external/MAFFT_Windows.zip' 2024-05-29T15:35:42,533 adding 'funvip/external/__init__.py' 2024-05-29T15:35:42,542 adding 'funvip/external/BLAST_Windows/Uninstall-ncbi-blast-2.12.0+.exe' 2024-05-29T15:35:45,968 adding 'funvip/external/BLAST_Windows/bin/blastn.exe' 2024-05-29T15:35:46,086 adding 'funvip/external/BLAST_Windows/bin/cleanup-blastdb-volumes.py' 2024-05-29T15:35:46,088 adding 'funvip/external/BLAST_Windows/bin/get_species_taxids.sh' 2024-05-29T15:35:46,092 adding 'funvip/external/BLAST_Windows/bin/legacy_blast.pl' 2024-05-29T15:35:48,635 adding 'funvip/external/BLAST_Windows/bin/makeblastdb.exe' 2024-05-29T15:35:48,749 adding 'funvip/external/BLAST_Windows/bin/nghttp2.dll' 2024-05-29T15:35:48,754 adding 'funvip/external/BLAST_Windows/bin/update_blastdb.pl' 2024-05-29T15:35:48,756 adding 'funvip/external/BLAST_Windows/doc/README.txt' 2024-05-29T15:35:48,813 adding 'funvip/external/FastTree_Windows/FastTree.exe' 2024-05-29T15:35:48,855 adding 'funvip/external/Gblocks_Windows_0.91b/Gblocks_0.91b/Gblocks.exe' 2024-05-29T15:35:48,858 adding 'funvip/external/Gblocks_Windows_0.91b/Gblocks_0.91b/nad3.pir' 2024-05-29T15:35:48,859 adding 'funvip/external/Gblocks_Windows_0.91b/Gblocks_0.91b/paths' 2024-05-29T15:35:48,865 adding 'funvip/external/Gblocks_Windows_0.91b/Gblocks_0.91b/Documentation/Gblocks_documentation.html' 2024-05-29T15:35:48,867 adding 'funvip/external/Gblocks_Windows_0.91b/Gblocks_0.91b/more_alignments/cox2.pir' 2024-05-29T15:35:48,869 adding 'funvip/external/Gblocks_Windows_0.91b/Gblocks_0.91b/more_alignments/cytb.pir' 2024-05-29T15:35:48,871 adding 'funvip/external/Gblocks_Windows_0.91b/Gblocks_0.91b/more_alignments/nad3.pir' 2024-05-29T15:35:48,873 adding 'funvip/external/Gblocks_Windows_0.91b/Gblocks_0.91b/more_alignments/nad5.pir' 2024-05-29T15:35:48,880 adding 'funvip/external/RAxML_Windows/GPL-3.0.txt' 2024-05-29T15:35:48,881 adding 'funvip/external/RAxML_Windows/README' 2024-05-29T15:35:49,172 adding 'funvip/external/RAxML_Windows/raxmlHPC-PTHREADS-AVX2.exe' 2024-05-29T15:35:49,262 adding 'funvip/external/iqtree/example.cf' 2024-05-29T15:35:49,277 adding 'funvip/external/iqtree/example.nex' 2024-05-29T15:35:49,289 adding 'funvip/external/iqtree/example.phy' 2024-05-29T15:35:49,320 adding 'funvip/external/iqtree/models.nex' 2024-05-29T15:35:51,398 adding 'funvip/external/iqtree/bin/iqtree2-click.exe' 2024-05-29T15:35:53,560 adding 'funvip/external/iqtree/bin/iqtree2.exe' 2024-05-29T15:35:53,820 adding 'funvip/external/iqtree/bin/libiomp5md.dll' 2024-05-29T15:35:53,834 adding 'funvip/external/mmseqs_Windows/LICENSE.md' 2024-05-29T15:35:53,836 adding 'funvip/external/mmseqs_Windows/README.md' 2024-05-29T15:35:53,837 adding 'funvip/external/mmseqs_Windows/mmseqs.bat' 2024-05-29T15:35:53,969 adding 'funvip/external/mmseqs_Windows/bin/busybox.exe' 2024-05-29T15:35:53,983 adding 'funvip/external/mmseqs_Windows/bin/cygbz2-1.dll' 2024-05-29T15:35:53,996 adding 'funvip/external/mmseqs_Windows/bin/cyggcc_s-seh-1.dll' 2024-05-29T15:35:54,039 adding 'funvip/external/mmseqs_Windows/bin/cyggomp-1.dll' 2024-05-29T15:35:54,300 adding 'funvip/external/mmseqs_Windows/bin/cygstdc++-6.dll' 2024-05-29T15:35:54,896 adding 'funvip/external/mmseqs_Windows/bin/cygwin1.dll' 2024-05-29T15:35:54,933 adding 'funvip/external/mmseqs_Windows/bin/cygz.dll' 2024-05-29T15:35:58,279 adding 'funvip/external/mmseqs_Windows/bin/mmseqs.exe' 2024-05-29T15:35:58,402 adding 'funvip/external/mmseqs_Windows/examples/QUERY.fasta' 2024-05-29T15:35:58,406 adding 'funvip/external/mmseqs_Windows/matrices/PAM10.out' 2024-05-29T15:35:58,407 adding 'funvip/external/mmseqs_Windows/matrices/PAM100.out' 2024-05-29T15:35:58,409 adding 'funvip/external/mmseqs_Windows/matrices/PAM110.out' 2024-05-29T15:35:58,410 adding 'funvip/external/mmseqs_Windows/matrices/PAM120.out' 2024-05-29T15:35:58,411 adding 'funvip/external/mmseqs_Windows/matrices/PAM130.out' 2024-05-29T15:35:58,413 adding 'funvip/external/mmseqs_Windows/matrices/PAM140.out' 2024-05-29T15:35:58,414 adding 'funvip/external/mmseqs_Windows/matrices/PAM150.out' 2024-05-29T15:35:58,415 adding 'funvip/external/mmseqs_Windows/matrices/PAM160.out' 2024-05-29T15:35:58,417 adding 'funvip/external/mmseqs_Windows/matrices/PAM170.out' 2024-05-29T15:35:58,418 adding 'funvip/external/mmseqs_Windows/matrices/PAM180.out' 2024-05-29T15:35:58,419 adding 'funvip/external/mmseqs_Windows/matrices/PAM190.out' 2024-05-29T15:35:58,421 adding 'funvip/external/mmseqs_Windows/matrices/PAM20.out' 2024-05-29T15:35:58,422 adding 'funvip/external/mmseqs_Windows/matrices/PAM30.out' 2024-05-29T15:35:58,424 adding 'funvip/external/mmseqs_Windows/matrices/PAM40.out' 2024-05-29T15:35:58,425 adding 'funvip/external/mmseqs_Windows/matrices/PAM50.out' 2024-05-29T15:35:58,427 adding 'funvip/external/mmseqs_Windows/matrices/PAM60.out' 2024-05-29T15:35:58,428 adding 'funvip/external/mmseqs_Windows/matrices/PAM70.out' 2024-05-29T15:35:58,429 adding 'funvip/external/mmseqs_Windows/matrices/PAM80.out' 2024-05-29T15:35:58,430 adding 'funvip/external/mmseqs_Windows/matrices/PAM90.out' 2024-05-29T15:35:58,432 adding 'funvip/external/mmseqs_Windows/matrices/VTML10.out' 2024-05-29T15:35:58,433 adding 'funvip/external/mmseqs_Windows/matrices/VTML120.out' 2024-05-29T15:35:58,435 adding 'funvip/external/mmseqs_Windows/matrices/VTML160.out' 2024-05-29T15:35:58,436 adding 'funvip/external/mmseqs_Windows/matrices/VTML20.out' 2024-05-29T15:35:58,437 adding 'funvip/external/mmseqs_Windows/matrices/VTML40.out' 2024-05-29T15:35:58,439 adding 'funvip/external/mmseqs_Windows/matrices/VTML80.out' 2024-05-29T15:35:58,440 adding 'funvip/external/mmseqs_Windows/matrices/blosum100.out' 2024-05-29T15:35:58,442 adding 'funvip/external/mmseqs_Windows/matrices/blosum30.out' 2024-05-29T15:35:58,443 adding 'funvip/external/mmseqs_Windows/matrices/blosum35.out' 2024-05-29T15:35:58,445 adding 'funvip/external/mmseqs_Windows/matrices/blosum40.out' 2024-05-29T15:35:58,446 adding 'funvip/external/mmseqs_Windows/matrices/blosum45.out' 2024-05-29T15:35:58,448 adding 'funvip/external/mmseqs_Windows/matrices/blosum50.out' 2024-05-29T15:35:58,449 adding 'funvip/external/mmseqs_Windows/matrices/blosum55.out' 2024-05-29T15:35:58,451 adding 'funvip/external/mmseqs_Windows/matrices/blosum60.out' 2024-05-29T15:35:58,452 adding 'funvip/external/mmseqs_Windows/matrices/blosum62.out' 2024-05-29T15:35:58,454 adding 'funvip/external/mmseqs_Windows/matrices/blosum65.out' 2024-05-29T15:35:58,455 adding 'funvip/external/mmseqs_Windows/matrices/blosum70.out' 2024-05-29T15:35:58,457 adding 'funvip/external/mmseqs_Windows/matrices/blosum75.out' 2024-05-29T15:35:58,458 adding 'funvip/external/mmseqs_Windows/matrices/blosum80.out' 2024-05-29T15:35:58,459 adding 'funvip/external/mmseqs_Windows/matrices/blosum85.out' 2024-05-29T15:35:58,461 adding 'funvip/external/mmseqs_Windows/matrices/blosum90.out' 2024-05-29T15:35:58,462 adding 'funvip/external/mmseqs_Windows/matrices/blosum95.out' 2024-05-29T15:35:58,463 adding 'funvip/external/mmseqs_Windows/matrices/nucleotide.out' 2024-05-29T15:35:58,465 adding 'funvip/external/mmseqs_Windows/util/bash-completion.sh' 2024-05-29T15:35:58,467 adding 'funvip/external/trimal.v1.4/trimAl/AUTHORS' 2024-05-29T15:35:58,469 adding 'funvip/external/trimal.v1.4/trimAl/CHANGELOG' 2024-05-29T15:35:58,475 adding 'funvip/external/trimal.v1.4/trimAl/LICENSE' 2024-05-29T15:35:58,476 adding 'funvip/external/trimal.v1.4/trimAl/README' 2024-05-29T15:35:58,582 adding 'funvip/external/trimal.v1.4/trimAl/bin/libgcc_s_dw2-1.dll' 2024-05-29T15:35:58,752 adding 'funvip/external/trimal.v1.4/trimAl/bin/libstdc++-6.dll' 2024-05-29T15:35:58,820 adding 'funvip/external/trimal.v1.4/trimAl/bin/trimal.exe' 2024-05-29T15:35:58,824 adding 'funvip/external/trimal.v1.4/trimAl/scripts/check_codon_alignments.py' 2024-05-29T15:35:58,825 adding 'funvip/external/trimal.v1.4/trimAl/scripts/compare_trimmed_msas.sh' 2024-05-29T15:35:58,827 adding 'funvip/external/trimal.v1.4/trimAl/scripts/generateRandomAlignmentsUsingAsSeedRealAlignments.py' 2024-05-29T15:35:58,831 adding 'funvip/external/trimal.v1.4/trimAl/scripts/generate_trimmed_msas.sh' 2024-05-29T15:35:58,833 adding 'funvip/external/trimal.v1.4/trimAl/scripts/get_sequence_representative_from_alignment.py' 2024-05-29T15:35:58,834 adding 'funvip/external/trimal.v1.4/trimAl/scripts/get_sequences_gaps_ratio.py' 2024-05-29T15:35:58,835 adding 'funvip/external/trimal.v1.4/trimAl/scripts/remove_shorter_sequences.py' 2024-05-29T15:35:58,837 adding 'funvip/external/trimal.v1.4/trimAl/scripts/selective_trimming_for_dNdS_analyses.based_neighbours.py' 2024-05-29T15:35:58,839 adding 'funvip/external/trimal.v1.4/trimAl/scripts/set_manual_boundaries.py' 2024-05-29T15:35:58,852 adding 'funvip/external/trimal.v1.4/trimAl/source/alignment.cpp' 2024-05-29T15:35:58,854 adding 'funvip/external/trimal.v1.4/trimAl/source/alignment.h' 2024-05-29T15:35:58,878 adding 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(pyproject.toml): finished with status 'done' 2024-05-29T15:36:22,061 Created wheel for funvip: filename=FunVIP-0.3.23-py3-none-any.whl size=59749053 sha256=f853a145c71e289d7f3e06b321116cdccf421469a1e9942b6c447fe7daa20a44 2024-05-29T15:36:22,062 Stored in directory: /tmp/pip-ephem-wheel-cache-257cygpv/wheels/a8/02/40/5843424c98fd5a8db047b753fab91ce8f748ecdc8377ed4aa2 2024-05-29T15:36:22,097 Successfully built funvip 2024-05-29T15:36:23,469 Removed build tracker: '/tmp/pip-build-tracker-5lrnn4lp'