2024-05-29T16:40:43,501 Created temporary directory: /tmp/pip-build-tracker-6xky7tsr 2024-05-29T16:40:43,502 Initialized build tracking at /tmp/pip-build-tracker-6xky7tsr 2024-05-29T16:40:43,503 Created build tracker: /tmp/pip-build-tracker-6xky7tsr 2024-05-29T16:40:43,503 Entered build tracker: /tmp/pip-build-tracker-6xky7tsr 2024-05-29T16:40:43,504 Created temporary directory: /tmp/pip-wheel-a380x0pn 2024-05-29T16:40:43,507 Created temporary directory: /tmp/pip-ephem-wheel-cache-0de34zz3 2024-05-29T16:40:43,529 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2024-05-29T16:40:43,532 2 location(s) to search for versions of pichemist: 2024-05-29T16:40:43,532 * https://pypi.org/simple/pichemist/ 2024-05-29T16:40:43,532 * https://www.piwheels.org/simple/pichemist/ 2024-05-29T16:40:43,533 Fetching project page and analyzing links: https://pypi.org/simple/pichemist/ 2024-05-29T16:40:43,534 Getting page https://pypi.org/simple/pichemist/ 2024-05-29T16:40:43,535 Found index url https://pypi.org/simple/ 2024-05-29T16:40:43,750 Fetched page https://pypi.org/simple/pichemist/ as application/vnd.pypi.simple.v1+json 2024-05-29T16:40:43,751 Skipping link: No binaries permitted for pichemist: https://files.pythonhosted.org/packages/87/1a/bb171094da5c6a6829a2043fc67059297628311a144d79b7aa7dc156d8fd/pichemist-0.1.0-py3-none-any.whl (from https://pypi.org/simple/pichemist/) 2024-05-29T16:40:43,752 Found link https://files.pythonhosted.org/packages/0d/d8/1621751aa5081e2b1fa62f4cef7de3a2c38a3cad4e4a2b21fc35e08103b0/pichemist-0.1.0.tar.gz (from https://pypi.org/simple/pichemist/), version: 0.1.0 2024-05-29T16:40:43,753 Fetching project page and analyzing links: https://www.piwheels.org/simple/pichemist/ 2024-05-29T16:40:43,753 Getting page https://www.piwheels.org/simple/pichemist/ 2024-05-29T16:40:43,755 Found index url https://www.piwheels.org/simple/ 2024-05-29T16:40:43,910 Fetched page https://www.piwheels.org/simple/pichemist/ as text/html 2024-05-29T16:40:43,911 Skipping link: not a file: https://www.piwheels.org/simple/pichemist/ 2024-05-29T16:40:43,912 Skipping link: not a file: https://pypi.org/simple/pichemist/ 2024-05-29T16:40:43,930 Given no hashes to check 1 links for project 'pichemist': discarding no candidates 2024-05-29T16:40:43,948 Collecting pichemist==0.1.0 2024-05-29T16:40:43,951 Created temporary directory: /tmp/pip-unpack-8brnxwpu 2024-05-29T16:40:44,186 Downloading pichemist-0.1.0.tar.gz (56 kB) 2024-05-29T16:40:44,408 Added pichemist==0.1.0 from https://files.pythonhosted.org/packages/0d/d8/1621751aa5081e2b1fa62f4cef7de3a2c38a3cad4e4a2b21fc35e08103b0/pichemist-0.1.0.tar.gz to build tracker '/tmp/pip-build-tracker-6xky7tsr' 2024-05-29T16:40:44,410 Running setup.py (path:/tmp/pip-wheel-a380x0pn/pichemist_8416a7d8b58149a09ca266f1b1a274d4/setup.py) egg_info for package pichemist 2024-05-29T16:40:44,411 Created temporary directory: /tmp/pip-pip-egg-info-6q22e_pt 2024-05-29T16:40:44,412 Preparing metadata (setup.py): started 2024-05-29T16:40:44,413 Running command python setup.py egg_info 2024-05-29T16:40:45,181 /usr/local/lib/python3.11/dist-packages/setuptools/__init__.py:81: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. 2024-05-29T16:40:45,181 !! 2024-05-29T16:40:45,182 ******************************************************************************** 2024-05-29T16:40:45,183 Requirements should be satisfied by a PEP 517 installer. 2024-05-29T16:40:45,183 If you are using pip, you can try `pip install --use-pep517`. 2024-05-29T16:40:45,184 ******************************************************************************** 2024-05-29T16:40:45,185 !! 2024-05-29T16:40:45,186 dist.fetch_build_eggs(dist.setup_requires) 2024-05-29T16:40:58,104 running egg_info 2024-05-29T16:40:58,105 creating /tmp/pip-pip-egg-info-6q22e_pt/pichemist.egg-info 2024-05-29T16:40:58,139 writing /tmp/pip-pip-egg-info-6q22e_pt/pichemist.egg-info/PKG-INFO 2024-05-29T16:40:58,142 writing dependency_links to /tmp/pip-pip-egg-info-6q22e_pt/pichemist.egg-info/dependency_links.txt 2024-05-29T16:40:58,143 writing entry points to /tmp/pip-pip-egg-info-6q22e_pt/pichemist.egg-info/entry_points.txt 2024-05-29T16:40:58,145 writing requirements to /tmp/pip-pip-egg-info-6q22e_pt/pichemist.egg-info/requires.txt 2024-05-29T16:40:58,147 writing top-level names to /tmp/pip-pip-egg-info-6q22e_pt/pichemist.egg-info/top_level.txt 2024-05-29T16:40:58,148 writing manifest file '/tmp/pip-pip-egg-info-6q22e_pt/pichemist.egg-info/SOURCES.txt' 2024-05-29T16:40:58,257 reading manifest file '/tmp/pip-pip-egg-info-6q22e_pt/pichemist.egg-info/SOURCES.txt' 2024-05-29T16:40:58,259 reading manifest template 'MANIFEST.in' 2024-05-29T16:40:58,286 adding license file 'LICENSE' 2024-05-29T16:40:58,290 writing manifest file '/tmp/pip-pip-egg-info-6q22e_pt/pichemist.egg-info/SOURCES.txt' 2024-05-29T16:40:58,411 Preparing metadata (setup.py): finished with status 'done' 2024-05-29T16:40:58,415 Source in /tmp/pip-wheel-a380x0pn/pichemist_8416a7d8b58149a09ca266f1b1a274d4 has version 0.1.0, which satisfies requirement pichemist==0.1.0 from https://files.pythonhosted.org/packages/0d/d8/1621751aa5081e2b1fa62f4cef7de3a2c38a3cad4e4a2b21fc35e08103b0/pichemist-0.1.0.tar.gz 2024-05-29T16:40:58,416 Removed pichemist==0.1.0 from https://files.pythonhosted.org/packages/0d/d8/1621751aa5081e2b1fa62f4cef7de3a2c38a3cad4e4a2b21fc35e08103b0/pichemist-0.1.0.tar.gz from build tracker '/tmp/pip-build-tracker-6xky7tsr' 2024-05-29T16:40:58,421 Created temporary directory: /tmp/pip-unpack-x4zpbpd6 2024-05-29T16:40:58,422 Created temporary directory: /tmp/pip-unpack-3m15q5lb 2024-05-29T16:40:58,427 Building wheels for collected packages: pichemist 2024-05-29T16:40:58,431 Created temporary directory: /tmp/pip-wheel-0e2afroh 2024-05-29T16:40:58,431 Building wheel for pichemist (setup.py): started 2024-05-29T16:40:58,433 Destination directory: /tmp/pip-wheel-0e2afroh 2024-05-29T16:40:58,433 Running command python setup.py bdist_wheel 2024-05-29T16:40:59,184 /usr/local/lib/python3.11/dist-packages/setuptools/__init__.py:81: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. 2024-05-29T16:40:59,184 !! 2024-05-29T16:40:59,185 ******************************************************************************** 2024-05-29T16:40:59,186 Requirements should be satisfied by a PEP 517 installer. 2024-05-29T16:40:59,186 If you are using pip, you can try `pip install --use-pep517`. 2024-05-29T16:40:59,187 ******************************************************************************** 2024-05-29T16:40:59,188 !! 2024-05-29T16:40:59,188 dist.fetch_build_eggs(dist.setup_requires) 2024-05-29T16:41:01,338 running bdist_wheel 2024-05-29T16:41:01,483 running build 2024-05-29T16:41:01,484 running build_py 2024-05-29T16:41:01,525 creating build 2024-05-29T16:41:01,526 creating build/lib 2024-05-29T16:41:01,527 creating build/lib/pichemist 2024-05-29T16:41:01,530 copying pichemist/plot.py -> build/lib/pichemist 2024-05-29T16:41:01,536 copying pichemist/charges.py -> build/lib/pichemist 2024-05-29T16:41:01,538 copying pichemist/io.py -> build/lib/pichemist 2024-05-29T16:41:01,540 copying pichemist/isoelectric.py -> build/lib/pichemist 2024-05-29T16:41:01,542 copying pichemist/cli.py -> build/lib/pichemist 2024-05-29T16:41:01,544 copying pichemist/config.py -> build/lib/pichemist 2024-05-29T16:41:01,545 copying pichemist/__init__.py -> build/lib/pichemist 2024-05-29T16:41:01,547 copying pichemist/stats.py -> build/lib/pichemist 2024-05-29T16:41:01,549 copying pichemist/core.py -> build/lib/pichemist 2024-05-29T16:41:01,551 copying pichemist/api.py -> build/lib/pichemist 2024-05-29T16:41:01,553 copying pichemist/molecule.py -> build/lib/pichemist 2024-05-29T16:41:01,555 copying pichemist/model.py -> build/lib/pichemist 2024-05-29T16:41:01,557 copying pichemist/utils.py -> build/lib/pichemist 2024-05-29T16:41:01,559 creating build/lib/pichemist/smarts 2024-05-29T16:41:01,561 copying pichemist/smarts/__init__.py -> build/lib/pichemist/smarts 2024-05-29T16:41:01,562 copying pichemist/smarts/pka_set.py -> build/lib/pichemist/smarts 2024-05-29T16:41:01,565 creating build/lib/pichemist/pka 2024-05-29T16:41:01,566 copying pichemist/pka/__init__.py -> build/lib/pichemist/pka 2024-05-29T16:41:01,567 copying pichemist/pka/pkamatcher.py -> build/lib/pichemist/pka 2024-05-29T16:41:01,569 copying pichemist/pka/acd.py -> build/lib/pichemist/pka 2024-05-29T16:41:01,571 copying pichemist/pka/utils.py -> build/lib/pichemist/pka 2024-05-29T16:41:01,573 creating build/lib/pichemist/fasta 2024-05-29T16:41:01,574 copying pichemist/fasta/matcher.py -> build/lib/pichemist/fasta 2024-05-29T16:41:01,577 copying pichemist/fasta/scrambler.py -> build/lib/pichemist/fasta 2024-05-29T16:41:01,578 copying pichemist/fasta/pka_sets.py -> build/lib/pichemist/fasta 2024-05-29T16:41:01,580 copying pichemist/fasta/__init__.py -> build/lib/pichemist/fasta 2024-05-29T16:41:01,581 copying pichemist/fasta/helpers.py -> build/lib/pichemist/fasta 2024-05-29T16:41:01,583 copying pichemist/fasta/smarts.py -> build/lib/pichemist/fasta 2024-05-29T16:41:01,585 running egg_info 2024-05-29T16:41:01,651 writing pichemist.egg-info/PKG-INFO 2024-05-29T16:41:01,654 writing dependency_links to pichemist.egg-info/dependency_links.txt 2024-05-29T16:41:01,656 writing entry points to pichemist.egg-info/entry_points.txt 2024-05-29T16:41:01,657 writing requirements to pichemist.egg-info/requires.txt 2024-05-29T16:41:01,658 writing top-level names to pichemist.egg-info/top_level.txt 2024-05-29T16:41:01,696 reading manifest file 'pichemist.egg-info/SOURCES.txt' 2024-05-29T16:41:01,700 reading manifest template 'MANIFEST.in' 2024-05-29T16:41:01,724 adding license file 'LICENSE' 2024-05-29T16:41:01,729 writing manifest file 'pichemist.egg-info/SOURCES.txt' 2024-05-29T16:41:01,732 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'pichemist.data.__pycache__' is absent from the `packages` configuration. 2024-05-29T16:41:01,732 !! 2024-05-29T16:41:01,733 ******************************************************************************** 2024-05-29T16:41:01,734 ############################ 2024-05-29T16:41:01,735 # Package would be ignored # 2024-05-29T16:41:01,735 ############################ 2024-05-29T16:41:01,736 Python recognizes 'pichemist.data.__pycache__' as an importable package[^1], 2024-05-29T16:41:01,736 but it is absent from setuptools' `packages` configuration. 2024-05-29T16:41:01,737 This leads to an ambiguous overall configuration. If you want to distribute this 2024-05-29T16:41:01,738 package, please make sure that 'pichemist.data.__pycache__' is explicitly added 2024-05-29T16:41:01,738 to the `packages` configuration field. 2024-05-29T16:41:01,739 Alternatively, you can also rely on setuptools' discovery methods 2024-05-29T16:41:01,740 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-05-29T16:41:01,741 instead of `find_packages(...)`/`find:`). 2024-05-29T16:41:01,741 You can read more about "package discovery" on setuptools documentation page: 2024-05-29T16:41:01,742 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-05-29T16:41:01,743 If you don't want 'pichemist.data.__pycache__' to be distributed and are 2024-05-29T16:41:01,744 already explicitly excluding 'pichemist.data.__pycache__' via 2024-05-29T16:41:01,745 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-05-29T16:41:01,745 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-05-29T16:41:01,746 combination with a more fine grained `package-data` configuration. 2024-05-29T16:41:01,747 You can read more about "package data files" on setuptools documentation page: 2024-05-29T16:41:01,748 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-05-29T16:41:01,749 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-05-29T16:41:01,750 even if it does not contain any `.py` files. 2024-05-29T16:41:01,750 On the other hand, currently there is no concept of package data 2024-05-29T16:41:01,751 directory, all directories are treated like packages. 2024-05-29T16:41:01,752 ******************************************************************************** 2024-05-29T16:41:01,753 !! 2024-05-29T16:41:01,753 check.warn(importable) 2024-05-29T16:41:01,754 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'pichemist.data.fasta' is absent from the `packages` configuration. 2024-05-29T16:41:01,754 !! 2024-05-29T16:41:01,755 ******************************************************************************** 2024-05-29T16:41:01,755 ############################ 2024-05-29T16:41:01,756 # Package would be ignored # 2024-05-29T16:41:01,756 ############################ 2024-05-29T16:41:01,757 Python recognizes 'pichemist.data.fasta' as an importable package[^1], 2024-05-29T16:41:01,757 but it is absent from setuptools' `packages` configuration. 2024-05-29T16:41:01,758 This leads to an ambiguous overall configuration. If you want to distribute this 2024-05-29T16:41:01,758 package, please make sure that 'pichemist.data.fasta' is explicitly added 2024-05-29T16:41:01,759 to the `packages` configuration field. 2024-05-29T16:41:01,759 Alternatively, you can also rely on setuptools' discovery methods 2024-05-29T16:41:01,760 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-05-29T16:41:01,761 instead of `find_packages(...)`/`find:`). 2024-05-29T16:41:01,762 You can read more about "package discovery" on setuptools documentation page: 2024-05-29T16:41:01,763 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-05-29T16:41:01,764 If you don't want 'pichemist.data.fasta' to be distributed and are 2024-05-29T16:41:01,764 already explicitly excluding 'pichemist.data.fasta' via 2024-05-29T16:41:01,765 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-05-29T16:41:01,765 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-05-29T16:41:01,766 combination with a more fine grained `package-data` configuration. 2024-05-29T16:41:01,767 You can read more about "package data files" on setuptools documentation page: 2024-05-29T16:41:01,768 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-05-29T16:41:01,769 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-05-29T16:41:01,770 even if it does not contain any `.py` files. 2024-05-29T16:41:01,770 On the other hand, currently there is no concept of package data 2024-05-29T16:41:01,771 directory, all directories are treated like packages. 2024-05-29T16:41:01,771 ******************************************************************************** 2024-05-29T16:41:01,772 !! 2024-05-29T16:41:01,773 check.warn(importable) 2024-05-29T16:41:01,774 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'pichemist.data.fasta.legacy' is absent from the `packages` configuration. 2024-05-29T16:41:01,774 !! 2024-05-29T16:41:01,776 ******************************************************************************** 2024-05-29T16:41:01,777 ############################ 2024-05-29T16:41:01,777 # Package would be ignored # 2024-05-29T16:41:01,778 ############################ 2024-05-29T16:41:01,779 Python recognizes 'pichemist.data.fasta.legacy' as an importable package[^1], 2024-05-29T16:41:01,779 but it is absent from setuptools' `packages` configuration. 2024-05-29T16:41:01,781 This leads to an ambiguous overall configuration. If you want to distribute this 2024-05-29T16:41:01,782 package, please make sure that 'pichemist.data.fasta.legacy' is explicitly added 2024-05-29T16:41:01,782 to the `packages` configuration field. 2024-05-29T16:41:01,783 Alternatively, you can also rely on setuptools' discovery methods 2024-05-29T16:41:01,783 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-05-29T16:41:01,784 instead of `find_packages(...)`/`find:`). 2024-05-29T16:41:01,785 You can read more about "package discovery" on setuptools documentation page: 2024-05-29T16:41:01,786 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-05-29T16:41:01,786 If you don't want 'pichemist.data.fasta.legacy' to be distributed and are 2024-05-29T16:41:01,787 already explicitly excluding 'pichemist.data.fasta.legacy' via 2024-05-29T16:41:01,787 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-05-29T16:41:01,787 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-05-29T16:41:01,788 combination with a more fine grained `package-data` configuration. 2024-05-29T16:41:01,789 You can read more about "package data files" on setuptools documentation page: 2024-05-29T16:41:01,790 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-05-29T16:41:01,791 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-05-29T16:41:01,791 even if it does not contain any `.py` files. 2024-05-29T16:41:01,792 On the other hand, currently there is no concept of package data 2024-05-29T16:41:01,792 directory, all directories are treated like packages. 2024-05-29T16:41:01,793 ******************************************************************************** 2024-05-29T16:41:01,794 !! 2024-05-29T16:41:01,794 check.warn(importable) 2024-05-29T16:41:01,795 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'pichemist.data.fasta.legacy.__pycache__' is absent from the `packages` configuration. 2024-05-29T16:41:01,795 !! 2024-05-29T16:41:01,796 ******************************************************************************** 2024-05-29T16:41:01,797 ############################ 2024-05-29T16:41:01,797 # Package would be ignored # 2024-05-29T16:41:01,798 ############################ 2024-05-29T16:41:01,798 Python recognizes 'pichemist.data.fasta.legacy.__pycache__' as an importable package[^1], 2024-05-29T16:41:01,799 but it is absent from setuptools' `packages` configuration. 2024-05-29T16:41:01,799 This leads to an ambiguous overall configuration. If you want to distribute this 2024-05-29T16:41:01,800 package, please make sure that 'pichemist.data.fasta.legacy.__pycache__' is explicitly added 2024-05-29T16:41:01,800 to the `packages` configuration field. 2024-05-29T16:41:01,801 Alternatively, you can also rely on setuptools' discovery methods 2024-05-29T16:41:01,802 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-05-29T16:41:01,802 instead of `find_packages(...)`/`find:`). 2024-05-29T16:41:01,803 You can read more about "package discovery" on setuptools documentation page: 2024-05-29T16:41:01,804 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-05-29T16:41:01,806 If you don't want 'pichemist.data.fasta.legacy.__pycache__' to be distributed and are 2024-05-29T16:41:01,806 already explicitly excluding 'pichemist.data.fasta.legacy.__pycache__' via 2024-05-29T16:41:01,807 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-05-29T16:41:01,808 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-05-29T16:41:01,809 combination with a more fine grained `package-data` configuration. 2024-05-29T16:41:01,810 You can read more about "package data files" on setuptools documentation page: 2024-05-29T16:41:01,811 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-05-29T16:41:01,813 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-05-29T16:41:01,813 even if it does not contain any `.py` files. 2024-05-29T16:41:01,814 On the other hand, currently there is no concept of package data 2024-05-29T16:41:01,814 directory, all directories are treated like packages. 2024-05-29T16:41:01,815 ******************************************************************************** 2024-05-29T16:41:01,816 !! 2024-05-29T16:41:01,816 check.warn(importable) 2024-05-29T16:41:01,817 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'pichemist.data.fasta.original_enriched' is absent from the `packages` configuration. 2024-05-29T16:41:01,817 !! 2024-05-29T16:41:01,818 ******************************************************************************** 2024-05-29T16:41:01,819 ############################ 2024-05-29T16:41:01,819 # Package would be ignored # 2024-05-29T16:41:01,820 ############################ 2024-05-29T16:41:01,820 Python recognizes 'pichemist.data.fasta.original_enriched' as an importable package[^1], 2024-05-29T16:41:01,821 but it is absent from setuptools' `packages` configuration. 2024-05-29T16:41:01,826 This leads to an ambiguous overall configuration. If you want to distribute this 2024-05-29T16:41:01,827 package, please make sure that 'pichemist.data.fasta.original_enriched' is explicitly added 2024-05-29T16:41:01,827 to the `packages` configuration field. 2024-05-29T16:41:01,828 Alternatively, you can also rely on setuptools' discovery methods 2024-05-29T16:41:01,829 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-05-29T16:41:01,829 instead of `find_packages(...)`/`find:`). 2024-05-29T16:41:01,830 You can read more about "package discovery" on setuptools documentation page: 2024-05-29T16:41:01,831 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-05-29T16:41:01,832 If you don't want 'pichemist.data.fasta.original_enriched' to be distributed and are 2024-05-29T16:41:01,833 already explicitly excluding 'pichemist.data.fasta.original_enriched' via 2024-05-29T16:41:01,833 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-05-29T16:41:01,834 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-05-29T16:41:01,834 combination with a more fine grained `package-data` configuration. 2024-05-29T16:41:01,835 You can read more about "package data files" on setuptools documentation page: 2024-05-29T16:41:01,836 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-05-29T16:41:01,838 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-05-29T16:41:01,839 even if it does not contain any `.py` files. 2024-05-29T16:41:01,839 On the other hand, currently there is no concept of package data 2024-05-29T16:41:01,840 directory, all directories are treated like packages. 2024-05-29T16:41:01,840 ******************************************************************************** 2024-05-29T16:41:01,842 !! 2024-05-29T16:41:01,842 check.warn(importable) 2024-05-29T16:41:01,843 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'pichemist.data.fasta.original_short' is absent from the `packages` configuration. 2024-05-29T16:41:01,843 !! 2024-05-29T16:41:01,845 ******************************************************************************** 2024-05-29T16:41:01,845 ############################ 2024-05-29T16:41:01,846 # Package would be ignored # 2024-05-29T16:41:01,846 ############################ 2024-05-29T16:41:01,846 Python recognizes 'pichemist.data.fasta.original_short' as an importable package[^1], 2024-05-29T16:41:01,847 but it is absent from setuptools' `packages` configuration. 2024-05-29T16:41:01,848 This leads to an ambiguous overall configuration. If you want to distribute this 2024-05-29T16:41:01,848 package, please make sure that 'pichemist.data.fasta.original_short' is explicitly added 2024-05-29T16:41:01,849 to the `packages` configuration field. 2024-05-29T16:41:01,850 Alternatively, you can also rely on setuptools' discovery methods 2024-05-29T16:41:01,850 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-05-29T16:41:01,851 instead of `find_packages(...)`/`find:`). 2024-05-29T16:41:01,852 You can read more about "package discovery" on setuptools documentation page: 2024-05-29T16:41:01,853 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-05-29T16:41:01,854 If you don't want 'pichemist.data.fasta.original_short' to be distributed and are 2024-05-29T16:41:01,854 already explicitly excluding 'pichemist.data.fasta.original_short' via 2024-05-29T16:41:01,855 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-05-29T16:41:01,855 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-05-29T16:41:01,856 combination with a more fine grained `package-data` configuration. 2024-05-29T16:41:01,857 You can read more about "package data files" on setuptools documentation page: 2024-05-29T16:41:01,858 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-05-29T16:41:01,860 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-05-29T16:41:01,860 even if it does not contain any `.py` files. 2024-05-29T16:41:01,861 On the other hand, currently there is no concept of package data 2024-05-29T16:41:01,861 directory, all directories are treated like packages. 2024-05-29T16:41:01,862 ******************************************************************************** 2024-05-29T16:41:01,863 !! 2024-05-29T16:41:01,863 check.warn(importable) 2024-05-29T16:41:01,864 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'pichemist.data.fasta.standardised' is absent from the `packages` configuration. 2024-05-29T16:41:01,864 !! 2024-05-29T16:41:01,866 ******************************************************************************** 2024-05-29T16:41:01,866 ############################ 2024-05-29T16:41:01,867 # Package would be ignored # 2024-05-29T16:41:01,867 ############################ 2024-05-29T16:41:01,868 Python recognizes 'pichemist.data.fasta.standardised' as an importable package[^1], 2024-05-29T16:41:01,868 but it is absent from setuptools' `packages` configuration. 2024-05-29T16:41:01,869 This leads to an ambiguous overall configuration. If you want to distribute this 2024-05-29T16:41:01,870 package, please make sure that 'pichemist.data.fasta.standardised' is explicitly added 2024-05-29T16:41:01,870 to the `packages` configuration field. 2024-05-29T16:41:01,871 Alternatively, you can also rely on setuptools' discovery methods 2024-05-29T16:41:01,872 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-05-29T16:41:01,873 instead of `find_packages(...)`/`find:`). 2024-05-29T16:41:01,874 You can read more about "package discovery" on setuptools documentation page: 2024-05-29T16:41:01,875 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-05-29T16:41:01,876 If you don't want 'pichemist.data.fasta.standardised' to be distributed and are 2024-05-29T16:41:01,876 already explicitly excluding 'pichemist.data.fasta.standardised' via 2024-05-29T16:41:01,877 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-05-29T16:41:01,877 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-05-29T16:41:01,877 combination with a more fine grained `package-data` configuration. 2024-05-29T16:41:01,878 You can read more about "package data files" on setuptools documentation page: 2024-05-29T16:41:01,879 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-05-29T16:41:01,880 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-05-29T16:41:01,881 even if it does not contain any `.py` files. 2024-05-29T16:41:01,881 On the other hand, currently there is no concept of package data 2024-05-29T16:41:01,882 directory, all directories are treated like packages. 2024-05-29T16:41:01,882 ******************************************************************************** 2024-05-29T16:41:01,883 !! 2024-05-29T16:41:01,883 check.warn(importable) 2024-05-29T16:41:01,884 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'pichemist.data.smarts' is absent from the `packages` configuration. 2024-05-29T16:41:01,885 !! 2024-05-29T16:41:01,886 ******************************************************************************** 2024-05-29T16:41:01,886 ############################ 2024-05-29T16:41:01,886 # Package would be ignored # 2024-05-29T16:41:01,887 ############################ 2024-05-29T16:41:01,887 Python recognizes 'pichemist.data.smarts' as an importable package[^1], 2024-05-29T16:41:01,888 but it is absent from setuptools' `packages` configuration. 2024-05-29T16:41:01,889 This leads to an ambiguous overall configuration. If you want to distribute this 2024-05-29T16:41:01,889 package, please make sure that 'pichemist.data.smarts' is explicitly added 2024-05-29T16:41:01,890 to the `packages` configuration field. 2024-05-29T16:41:01,893 Alternatively, you can also rely on setuptools' discovery methods 2024-05-29T16:41:01,894 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-05-29T16:41:01,894 instead of `find_packages(...)`/`find:`). 2024-05-29T16:41:01,895 You can read more about "package discovery" on setuptools documentation page: 2024-05-29T16:41:01,897 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-05-29T16:41:01,898 If you don't want 'pichemist.data.smarts' to be distributed and are 2024-05-29T16:41:01,899 already explicitly excluding 'pichemist.data.smarts' via 2024-05-29T16:41:01,899 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-05-29T16:41:01,900 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-05-29T16:41:01,900 combination with a more fine grained `package-data` configuration. 2024-05-29T16:41:01,902 You can read more about "package data files" on setuptools documentation page: 2024-05-29T16:41:01,903 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-05-29T16:41:01,904 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-05-29T16:41:01,905 even if it does not contain any `.py` files. 2024-05-29T16:41:01,906 On the other hand, currently there is no concept of package data 2024-05-29T16:41:01,906 directory, all directories are treated like packages. 2024-05-29T16:41:01,907 ******************************************************************************** 2024-05-29T16:41:01,908 !! 2024-05-29T16:41:01,909 check.warn(importable) 2024-05-29T16:41:01,909 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'pichemist.data.smarts.legacy' is absent from the `packages` configuration. 2024-05-29T16:41:01,910 !! 2024-05-29T16:41:01,911 ******************************************************************************** 2024-05-29T16:41:01,911 ############################ 2024-05-29T16:41:01,912 # Package would be ignored # 2024-05-29T16:41:01,912 ############################ 2024-05-29T16:41:01,913 Python recognizes 'pichemist.data.smarts.legacy' as an importable package[^1], 2024-05-29T16:41:01,914 but it is absent from setuptools' `packages` configuration. 2024-05-29T16:41:01,915 This leads to an ambiguous overall configuration. If you want to distribute this 2024-05-29T16:41:01,915 package, please make sure that 'pichemist.data.smarts.legacy' is explicitly added 2024-05-29T16:41:01,916 to the `packages` configuration field. 2024-05-29T16:41:01,917 Alternatively, you can also rely on setuptools' discovery methods 2024-05-29T16:41:01,918 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-05-29T16:41:01,918 instead of `find_packages(...)`/`find:`). 2024-05-29T16:41:01,919 You can read more about "package discovery" on setuptools documentation page: 2024-05-29T16:41:01,920 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-05-29T16:41:01,921 If you don't want 'pichemist.data.smarts.legacy' to be distributed and are 2024-05-29T16:41:01,922 already explicitly excluding 'pichemist.data.smarts.legacy' via 2024-05-29T16:41:01,922 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-05-29T16:41:01,923 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-05-29T16:41:01,923 combination with a more fine grained `package-data` configuration. 2024-05-29T16:41:01,925 You can read more about "package data files" on setuptools documentation page: 2024-05-29T16:41:01,926 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-05-29T16:41:01,928 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-05-29T16:41:01,929 even if it does not contain any `.py` files. 2024-05-29T16:41:01,929 On the other hand, currently there is no concept of package data 2024-05-29T16:41:01,930 directory, all directories are treated like packages. 2024-05-29T16:41:01,930 ******************************************************************************** 2024-05-29T16:41:01,931 !! 2024-05-29T16:41:01,932 check.warn(importable) 2024-05-29T16:41:01,932 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'pichemist.data.smarts.legacy.__pycache__' is absent from the `packages` configuration. 2024-05-29T16:41:01,933 !! 2024-05-29T16:41:01,934 ******************************************************************************** 2024-05-29T16:41:01,935 ############################ 2024-05-29T16:41:01,935 # Package would be ignored # 2024-05-29T16:41:01,936 ############################ 2024-05-29T16:41:01,937 Python recognizes 'pichemist.data.smarts.legacy.__pycache__' as an importable package[^1], 2024-05-29T16:41:01,937 but it is absent from setuptools' `packages` configuration. 2024-05-29T16:41:01,938 This leads to an ambiguous overall configuration. If you want to distribute this 2024-05-29T16:41:01,939 package, please make sure that 'pichemist.data.smarts.legacy.__pycache__' is explicitly added 2024-05-29T16:41:01,940 to the `packages` configuration field. 2024-05-29T16:41:01,941 Alternatively, you can also rely on setuptools' discovery methods 2024-05-29T16:41:01,941 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-05-29T16:41:01,942 instead of `find_packages(...)`/`find:`). 2024-05-29T16:41:01,942 You can read more about "package discovery" on setuptools documentation page: 2024-05-29T16:41:01,943 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-05-29T16:41:01,944 If you don't want 'pichemist.data.smarts.legacy.__pycache__' to be distributed and are 2024-05-29T16:41:01,945 already explicitly excluding 'pichemist.data.smarts.legacy.__pycache__' via 2024-05-29T16:41:01,945 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-05-29T16:41:01,946 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-05-29T16:41:01,946 combination with a more fine grained `package-data` configuration. 2024-05-29T16:41:01,947 You can read more about "package data files" on setuptools documentation page: 2024-05-29T16:41:01,949 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-05-29T16:41:01,950 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-05-29T16:41:01,951 even if it does not contain any `.py` files. 2024-05-29T16:41:01,951 On the other hand, currently there is no concept of package data 2024-05-29T16:41:01,952 directory, all directories are treated like packages. 2024-05-29T16:41:01,952 ******************************************************************************** 2024-05-29T16:41:01,953 !! 2024-05-29T16:41:01,954 check.warn(importable) 2024-05-29T16:41:01,954 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'pichemist.data.smarts.standardised' is absent from the `packages` configuration. 2024-05-29T16:41:01,955 !! 2024-05-29T16:41:01,956 ******************************************************************************** 2024-05-29T16:41:01,957 ############################ 2024-05-29T16:41:01,957 # Package would be ignored # 2024-05-29T16:41:01,958 ############################ 2024-05-29T16:41:01,959 Python recognizes 'pichemist.data.smarts.standardised' as an importable package[^1], 2024-05-29T16:41:01,959 but it is absent from setuptools' `packages` configuration. 2024-05-29T16:41:01,960 This leads to an ambiguous overall configuration. If you want to distribute this 2024-05-29T16:41:01,961 package, please make sure that 'pichemist.data.smarts.standardised' is explicitly added 2024-05-29T16:41:01,962 to the `packages` configuration field. 2024-05-29T16:41:01,964 Alternatively, you can also rely on setuptools' discovery methods 2024-05-29T16:41:01,966 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-05-29T16:41:01,968 instead of `find_packages(...)`/`find:`). 2024-05-29T16:41:01,970 You can read more about "package discovery" on setuptools documentation page: 2024-05-29T16:41:01,971 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-05-29T16:41:01,972 If you don't want 'pichemist.data.smarts.standardised' to be distributed and are 2024-05-29T16:41:01,973 already explicitly excluding 'pichemist.data.smarts.standardised' via 2024-05-29T16:41:01,973 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-05-29T16:41:01,974 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-05-29T16:41:01,975 combination with a more fine grained `package-data` configuration. 2024-05-29T16:41:01,976 You can read more about "package data files" on setuptools documentation page: 2024-05-29T16:41:01,977 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-05-29T16:41:01,979 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-05-29T16:41:01,979 even if it does not contain any `.py` files. 2024-05-29T16:41:01,980 On the other hand, currently there is no concept of package data 2024-05-29T16:41:01,980 directory, all directories are treated like packages. 2024-05-29T16:41:01,980 ******************************************************************************** 2024-05-29T16:41:01,981 !! 2024-05-29T16:41:01,982 check.warn(importable) 2024-05-29T16:41:01,982 creating build/lib/pichemist/data 2024-05-29T16:41:01,983 creating build/lib/pichemist/data/__pycache__ 2024-05-29T16:41:01,983 copying pichemist/data/__pycache__/legacy_conversion.cpython-38.pyc -> build/lib/pichemist/data/__pycache__ 2024-05-29T16:41:01,984 creating build/lib/pichemist/data/fasta 2024-05-29T16:41:01,984 copying pichemist/data/fasta/convert_legacy_gauci_to_original_and_standardised.py -> build/lib/pichemist/data/fasta 2024-05-29T16:41:01,985 copying pichemist/data/fasta/convert_legacy_promost_into_standardised.py -> build/lib/pichemist/data/fasta 2024-05-29T16:41:01,985 copying pichemist/data/fasta/convert_legacy_short_set_to_original.py -> build/lib/pichemist/data/fasta 2024-05-29T16:41:01,986 copying pichemist/data/fasta/convert_original_short_set_to_standardised.py -> build/lib/pichemist/data/fasta 2024-05-29T16:41:01,986 copying pichemist/data/fasta/legacy_conversion.py -> build/lib/pichemist/data/fasta 2024-05-29T16:41:01,987 creating build/lib/pichemist/data/fasta/legacy 2024-05-29T16:41:01,987 copying pichemist/data/fasta/legacy/aa_legend.tsv -> build/lib/pichemist/data/fasta/legacy 2024-05-29T16:41:01,988 copying pichemist/data/fasta/legacy/gauci.py -> build/lib/pichemist/data/fasta/legacy 2024-05-29T16:41:01,989 copying pichemist/data/fasta/legacy/promost.py -> build/lib/pichemist/data/fasta/legacy 2024-05-29T16:41:01,989 copying pichemist/data/fasta/legacy/short_pka_sets.py -> build/lib/pichemist/data/fasta/legacy 2024-05-29T16:41:01,990 creating build/lib/pichemist/data/fasta/legacy/__pycache__ 2024-05-29T16:41:01,990 copying pichemist/data/fasta/legacy/__pycache__/gauci.cpython-38.pyc -> build/lib/pichemist/data/fasta/legacy/__pycache__ 2024-05-29T16:41:01,991 copying pichemist/data/fasta/legacy/__pycache__/promost.cpython-38.pyc -> build/lib/pichemist/data/fasta/legacy/__pycache__ 2024-05-29T16:41:01,992 copying pichemist/data/fasta/legacy/__pycache__/short_pka_sets.cpython-38.pyc -> build/lib/pichemist/data/fasta/legacy/__pycache__ 2024-05-29T16:41:01,992 creating build/lib/pichemist/data/fasta/original_enriched 2024-05-29T16:41:01,993 copying pichemist/data/fasta/original_enriched/pka_set_gauci_original.json -> build/lib/pichemist/data/fasta/original_enriched 2024-05-29T16:41:01,994 creating build/lib/pichemist/data/fasta/original_short 2024-05-29T16:41:01,994 copying pichemist/data/fasta/original_short/pka_set_bjellqvist_original.json -> build/lib/pichemist/data/fasta/original_short 2024-05-29T16:41:01,995 copying pichemist/data/fasta/original_short/pka_set_dawson_original.json -> build/lib/pichemist/data/fasta/original_short 2024-05-29T16:41:01,995 copying pichemist/data/fasta/original_short/pka_set_dtaselect_original.json -> build/lib/pichemist/data/fasta/original_short 2024-05-29T16:41:01,996 copying pichemist/data/fasta/original_short/pka_set_emboss_original.json -> build/lib/pichemist/data/fasta/original_short 2024-05-29T16:41:01,996 copying pichemist/data/fasta/original_short/pka_set_grimsley_original.json -> build/lib/pichemist/data/fasta/original_short 2024-05-29T16:41:01,997 copying pichemist/data/fasta/original_short/pka_set_ipc2_peptide_original.json -> build/lib/pichemist/data/fasta/original_short 2024-05-29T16:41:01,998 copying pichemist/data/fasta/original_short/pka_set_ipc_peptide_original.json -> build/lib/pichemist/data/fasta/original_short 2024-05-29T16:41:01,998 copying pichemist/data/fasta/original_short/pka_set_lehninger_original.json -> build/lib/pichemist/data/fasta/original_short 2024-05-29T16:41:01,999 copying pichemist/data/fasta/original_short/pka_set_nozaki_original.json -> build/lib/pichemist/data/fasta/original_short 2024-05-29T16:41:01,999 copying pichemist/data/fasta/original_short/pka_set_rodwell_original.json -> build/lib/pichemist/data/fasta/original_short 2024-05-29T16:41:02,000 copying pichemist/data/fasta/original_short/pka_set_sillero_original.json -> build/lib/pichemist/data/fasta/original_short 2024-05-29T16:41:02,000 copying pichemist/data/fasta/original_short/pka_set_solomon_original.json -> build/lib/pichemist/data/fasta/original_short 2024-05-29T16:41:02,001 copying pichemist/data/fasta/original_short/pka_set_thurlkill_original.json -> build/lib/pichemist/data/fasta/original_short 2024-05-29T16:41:02,001 copying pichemist/data/fasta/original_short/pka_set_toseland_original.json -> build/lib/pichemist/data/fasta/original_short 2024-05-29T16:41:02,002 creating build/lib/pichemist/data/fasta/standardised 2024-05-29T16:41:02,002 copying pichemist/data/fasta/standardised/pka_set_bjellqvist_standardised.json -> build/lib/pichemist/data/fasta/standardised 2024-05-29T16:41:02,003 copying pichemist/data/fasta/standardised/pka_set_dawson_standardised.json -> build/lib/pichemist/data/fasta/standardised 2024-05-29T16:41:02,003 copying pichemist/data/fasta/standardised/pka_set_dtaselect_standardised.json -> build/lib/pichemist/data/fasta/standardised 2024-05-29T16:41:02,004 copying pichemist/data/fasta/standardised/pka_set_emboss_standardised.json -> build/lib/pichemist/data/fasta/standardised 2024-05-29T16:41:02,004 copying pichemist/data/fasta/standardised/pka_set_gauci_standardised.json -> build/lib/pichemist/data/fasta/standardised 2024-05-29T16:41:02,005 copying pichemist/data/fasta/standardised/pka_set_grimsley_standardised.json -> build/lib/pichemist/data/fasta/standardised 2024-05-29T16:41:02,005 copying pichemist/data/fasta/standardised/pka_set_ipc2_peptide_standardised.json -> build/lib/pichemist/data/fasta/standardised 2024-05-29T16:41:02,006 copying pichemist/data/fasta/standardised/pka_set_ipc_peptide_standardised.json -> build/lib/pichemist/data/fasta/standardised 2024-05-29T16:41:02,007 copying pichemist/data/fasta/standardised/pka_set_lehninger_standardised.json -> build/lib/pichemist/data/fasta/standardised 2024-05-29T16:41:02,007 copying pichemist/data/fasta/standardised/pka_set_nozaki_standardised.json -> build/lib/pichemist/data/fasta/standardised 2024-05-29T16:41:02,008 copying pichemist/data/fasta/standardised/pka_set_promost_standardised.json -> build/lib/pichemist/data/fasta/standardised 2024-05-29T16:41:02,008 copying pichemist/data/fasta/standardised/pka_set_rodwell_standardised.json -> build/lib/pichemist/data/fasta/standardised 2024-05-29T16:41:02,009 copying pichemist/data/fasta/standardised/pka_set_sillero_standardised.json -> build/lib/pichemist/data/fasta/standardised 2024-05-29T16:41:02,009 copying pichemist/data/fasta/standardised/pka_set_solomon_standardised.json -> build/lib/pichemist/data/fasta/standardised 2024-05-29T16:41:02,010 copying pichemist/data/fasta/standardised/pka_set_thurlkill_standardised.json -> build/lib/pichemist/data/fasta/standardised 2024-05-29T16:41:02,011 copying pichemist/data/fasta/standardised/pka_set_toseland_standardised.json -> build/lib/pichemist/data/fasta/standardised 2024-05-29T16:41:02,011 creating build/lib/pichemist/data/smarts 2024-05-29T16:41:02,012 copying pichemist/data/smarts/convert_legacy_aa_smarts_to_standardised.py -> build/lib/pichemist/data/smarts 2024-05-29T16:41:02,012 copying pichemist/data/smarts/convert_legacy_ss_smarts_to_standardised.py -> build/lib/pichemist/data/smarts 2024-05-29T16:41:02,013 creating build/lib/pichemist/data/smarts/legacy 2024-05-29T16:41:02,014 copying pichemist/data/smarts/legacy/smarts_naturalAAs.py -> build/lib/pichemist/data/smarts/legacy 2024-05-29T16:41:02,014 copying pichemist/data/smarts/legacy/smarts_notes.py -> build/lib/pichemist/data/smarts/legacy 2024-05-29T16:41:02,015 copying pichemist/data/smarts/legacy/smarts_pKaMatcher.dat -> build/lib/pichemist/data/smarts/legacy 2024-05-29T16:41:02,015 copying pichemist/data/smarts/legacy/smarts_pKaMatcher.py -> build/lib/pichemist/data/smarts/legacy 2024-05-29T16:41:02,015 creating build/lib/pichemist/data/smarts/legacy/__pycache__ 2024-05-29T16:41:02,016 copying pichemist/data/smarts/legacy/__pycache__/smarts_naturalAAs.cpython-38.pyc -> build/lib/pichemist/data/smarts/legacy/__pycache__ 2024-05-29T16:41:02,016 copying pichemist/data/smarts/legacy/__pycache__/smarts_notes.cpython-38.pyc -> build/lib/pichemist/data/smarts/legacy/__pycache__ 2024-05-29T16:41:02,017 copying pichemist/data/smarts/legacy/__pycache__/smarts_pKaMatcher.cpython-38.pyc -> build/lib/pichemist/data/smarts/legacy/__pycache__ 2024-05-29T16:41:02,017 creating build/lib/pichemist/data/smarts/standardised 2024-05-29T16:41:02,017 copying pichemist/data/smarts/standardised/aa_smarts_set_standardised.json -> build/lib/pichemist/data/smarts/standardised 2024-05-29T16:41:02,018 copying pichemist/data/smarts/standardised/ss_smarts_set_standardised.json -> build/lib/pichemist/data/smarts/standardised 2024-05-29T16:41:02,018 /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. 2024-05-29T16:41:02,019 !! 2024-05-29T16:41:02,020 ******************************************************************************** 2024-05-29T16:41:02,020 Please avoid running ``setup.py`` directly. 2024-05-29T16:41:02,021 Instead, use pypa/build, pypa/installer or other 2024-05-29T16:41:02,021 standards-based tools. 2024-05-29T16:41:02,022 See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. 2024-05-29T16:41:02,022 ******************************************************************************** 2024-05-29T16:41:02,023 !! 2024-05-29T16:41:02,024 self.initialize_options() 2024-05-29T16:41:02,024 installing to build/bdist.linux-armv7l/wheel 2024-05-29T16:41:02,025 running install 2024-05-29T16:41:02,042 running install_lib 2024-05-29T16:41:02,076 creating build/bdist.linux-armv7l 2024-05-29T16:41:02,077 creating build/bdist.linux-armv7l/wheel 2024-05-29T16:41:02,079 creating build/bdist.linux-armv7l/wheel/pichemist 2024-05-29T16:41:02,080 copying build/lib/pichemist/plot.py -> build/bdist.linux-armv7l/wheel/pichemist 2024-05-29T16:41:02,082 creating build/bdist.linux-armv7l/wheel/pichemist/smarts 2024-05-29T16:41:02,083 copying build/lib/pichemist/smarts/__init__.py -> build/bdist.linux-armv7l/wheel/pichemist/smarts 2024-05-29T16:41:02,085 copying build/lib/pichemist/smarts/pka_set.py -> build/bdist.linux-armv7l/wheel/pichemist/smarts 2024-05-29T16:41:02,087 copying build/lib/pichemist/charges.py -> build/bdist.linux-armv7l/wheel/pichemist 2024-05-29T16:41:02,089 copying build/lib/pichemist/io.py -> build/bdist.linux-armv7l/wheel/pichemist 2024-05-29T16:41:02,091 copying build/lib/pichemist/isoelectric.py -> build/bdist.linux-armv7l/wheel/pichemist 2024-05-29T16:41:02,094 creating build/bdist.linux-armv7l/wheel/pichemist/data 2024-05-29T16:41:02,095 creating build/bdist.linux-armv7l/wheel/pichemist/data/smarts 2024-05-29T16:41:02,097 creating build/bdist.linux-armv7l/wheel/pichemist/data/smarts/legacy 2024-05-29T16:41:02,098 copying build/lib/pichemist/data/smarts/legacy/smarts_pKaMatcher.dat -> build/bdist.linux-armv7l/wheel/pichemist/data/smarts/legacy 2024-05-29T16:41:02,103 copying build/lib/pichemist/data/smarts/legacy/smarts_naturalAAs.py -> build/bdist.linux-armv7l/wheel/pichemist/data/smarts/legacy 2024-05-29T16:41:02,107 creating build/bdist.linux-armv7l/wheel/pichemist/data/smarts/legacy/__pycache__ 2024-05-29T16:41:02,108 copying build/lib/pichemist/data/smarts/legacy/__pycache__/smarts_pKaMatcher.cpython-38.pyc -> build/bdist.linux-armv7l/wheel/pichemist/data/smarts/legacy/__pycache__ 2024-05-29T16:41:02,110 copying build/lib/pichemist/data/smarts/legacy/__pycache__/smarts_notes.cpython-38.pyc -> build/bdist.linux-armv7l/wheel/pichemist/data/smarts/legacy/__pycache__ 2024-05-29T16:41:02,111 copying build/lib/pichemist/data/smarts/legacy/__pycache__/smarts_naturalAAs.cpython-38.pyc -> build/bdist.linux-armv7l/wheel/pichemist/data/smarts/legacy/__pycache__ 2024-05-29T16:41:02,114 copying build/lib/pichemist/data/smarts/legacy/smarts_pKaMatcher.py -> build/bdist.linux-armv7l/wheel/pichemist/data/smarts/legacy 2024-05-29T16:41:02,116 copying build/lib/pichemist/data/smarts/legacy/smarts_notes.py -> build/bdist.linux-armv7l/wheel/pichemist/data/smarts/legacy 2024-05-29T16:41:02,117 copying build/lib/pichemist/data/smarts/convert_legacy_aa_smarts_to_standardised.py -> build/bdist.linux-armv7l/wheel/pichemist/data/smarts 2024-05-29T16:41:02,119 copying build/lib/pichemist/data/smarts/convert_legacy_ss_smarts_to_standardised.py -> build/bdist.linux-armv7l/wheel/pichemist/data/smarts 2024-05-29T16:41:02,122 creating build/bdist.linux-armv7l/wheel/pichemist/data/smarts/standardised 2024-05-29T16:41:02,123 copying build/lib/pichemist/data/smarts/standardised/aa_smarts_set_standardised.json -> build/bdist.linux-armv7l/wheel/pichemist/data/smarts/standardised 2024-05-29T16:41:02,127 copying build/lib/pichemist/data/smarts/standardised/ss_smarts_set_standardised.json -> build/bdist.linux-armv7l/wheel/pichemist/data/smarts/standardised 2024-05-29T16:41:02,130 creating build/bdist.linux-armv7l/wheel/pichemist/data/__pycache__ 2024-05-29T16:41:02,130 copying build/lib/pichemist/data/__pycache__/legacy_conversion.cpython-38.pyc -> build/bdist.linux-armv7l/wheel/pichemist/data/__pycache__ 2024-05-29T16:41:02,133 creating build/bdist.linux-armv7l/wheel/pichemist/data/fasta 2024-05-29T16:41:02,134 creating build/bdist.linux-armv7l/wheel/pichemist/data/fasta/original_enriched 2024-05-29T16:41:02,135 copying build/lib/pichemist/data/fasta/original_enriched/pka_set_gauci_original.json -> build/bdist.linux-armv7l/wheel/pichemist/data/fasta/original_enriched 2024-05-29T16:41:02,138 copying build/lib/pichemist/data/fasta/convert_legacy_promost_into_standardised.py -> build/bdist.linux-armv7l/wheel/pichemist/data/fasta 2024-05-29T16:41:02,140 creating build/bdist.linux-armv7l/wheel/pichemist/data/fasta/legacy 2024-05-29T16:41:02,141 copying build/lib/pichemist/data/fasta/legacy/gauci.py -> build/bdist.linux-armv7l/wheel/pichemist/data/fasta/legacy 2024-05-29T16:41:02,143 copying build/lib/pichemist/data/fasta/legacy/promost.py -> build/bdist.linux-armv7l/wheel/pichemist/data/fasta/legacy 2024-05-29T16:41:02,145 copying build/lib/pichemist/data/fasta/legacy/aa_legend.tsv -> build/bdist.linux-armv7l/wheel/pichemist/data/fasta/legacy 2024-05-29T16:41:02,147 creating build/bdist.linux-armv7l/wheel/pichemist/data/fasta/legacy/__pycache__ 2024-05-29T16:41:02,148 copying build/lib/pichemist/data/fasta/legacy/__pycache__/gauci.cpython-38.pyc -> build/bdist.linux-armv7l/wheel/pichemist/data/fasta/legacy/__pycache__ 2024-05-29T16:41:02,150 copying build/lib/pichemist/data/fasta/legacy/__pycache__/promost.cpython-38.pyc -> build/bdist.linux-armv7l/wheel/pichemist/data/fasta/legacy/__pycache__ 2024-05-29T16:41:02,152 copying build/lib/pichemist/data/fasta/legacy/__pycache__/short_pka_sets.cpython-38.pyc -> build/bdist.linux-armv7l/wheel/pichemist/data/fasta/legacy/__pycache__ 2024-05-29T16:41:02,154 copying build/lib/pichemist/data/fasta/legacy/short_pka_sets.py -> build/bdist.linux-armv7l/wheel/pichemist/data/fasta/legacy 2024-05-29T16:41:02,156 copying build/lib/pichemist/data/fasta/convert_legacy_gauci_to_original_and_standardised.py -> build/bdist.linux-armv7l/wheel/pichemist/data/fasta 2024-05-29T16:41:02,158 creating build/bdist.linux-armv7l/wheel/pichemist/data/fasta/original_short 2024-05-29T16:41:02,159 copying build/lib/pichemist/data/fasta/original_short/pka_set_solomon_original.json -> build/bdist.linux-armv7l/wheel/pichemist/data/fasta/original_short 2024-05-29T16:41:02,161 copying build/lib/pichemist/data/fasta/original_short/pka_set_emboss_original.json -> build/bdist.linux-armv7l/wheel/pichemist/data/fasta/original_short 2024-05-29T16:41:02,163 copying build/lib/pichemist/data/fasta/original_short/pka_set_bjellqvist_original.json -> build/bdist.linux-armv7l/wheel/pichemist/data/fasta/original_short 2024-05-29T16:41:02,165 copying build/lib/pichemist/data/fasta/original_short/pka_set_lehninger_original.json -> build/bdist.linux-armv7l/wheel/pichemist/data/fasta/original_short 2024-05-29T16:41:02,166 copying build/lib/pichemist/data/fasta/original_short/pka_set_dtaselect_original.json -> build/bdist.linux-armv7l/wheel/pichemist/data/fasta/original_short 2024-05-29T16:41:02,168 copying build/lib/pichemist/data/fasta/original_short/pka_set_dawson_original.json -> build/bdist.linux-armv7l/wheel/pichemist/data/fasta/original_short 2024-05-29T16:41:02,170 copying build/lib/pichemist/data/fasta/original_short/pka_set_rodwell_original.json -> build/bdist.linux-armv7l/wheel/pichemist/data/fasta/original_short 2024-05-29T16:41:02,171 copying build/lib/pichemist/data/fasta/original_short/pka_set_toseland_original.json -> build/bdist.linux-armv7l/wheel/pichemist/data/fasta/original_short 2024-05-29T16:41:02,173 copying build/lib/pichemist/data/fasta/original_short/pka_set_ipc_peptide_original.json -> build/bdist.linux-armv7l/wheel/pichemist/data/fasta/original_short 2024-05-29T16:41:02,175 copying build/lib/pichemist/data/fasta/original_short/pka_set_sillero_original.json -> build/bdist.linux-armv7l/wheel/pichemist/data/fasta/original_short 2024-05-29T16:41:02,176 copying build/lib/pichemist/data/fasta/original_short/pka_set_ipc2_peptide_original.json -> build/bdist.linux-armv7l/wheel/pichemist/data/fasta/original_short 2024-05-29T16:41:02,178 copying build/lib/pichemist/data/fasta/original_short/pka_set_nozaki_original.json -> build/bdist.linux-armv7l/wheel/pichemist/data/fasta/original_short 2024-05-29T16:41:02,180 copying build/lib/pichemist/data/fasta/original_short/pka_set_grimsley_original.json -> build/bdist.linux-armv7l/wheel/pichemist/data/fasta/original_short 2024-05-29T16:41:02,182 copying build/lib/pichemist/data/fasta/original_short/pka_set_thurlkill_original.json -> build/bdist.linux-armv7l/wheel/pichemist/data/fasta/original_short 2024-05-29T16:41:02,183 copying build/lib/pichemist/data/fasta/legacy_conversion.py -> build/bdist.linux-armv7l/wheel/pichemist/data/fasta 2024-05-29T16:41:02,185 copying build/lib/pichemist/data/fasta/convert_original_short_set_to_standardised.py -> build/bdist.linux-armv7l/wheel/pichemist/data/fasta 2024-05-29T16:41:02,187 copying build/lib/pichemist/data/fasta/convert_legacy_short_set_to_original.py -> build/bdist.linux-armv7l/wheel/pichemist/data/fasta 2024-05-29T16:41:02,189 creating build/bdist.linux-armv7l/wheel/pichemist/data/fasta/standardised 2024-05-29T16:41:02,190 copying build/lib/pichemist/data/fasta/standardised/pka_set_rodwell_standardised.json -> build/bdist.linux-armv7l/wheel/pichemist/data/fasta/standardised 2024-05-29T16:41:02,193 copying build/lib/pichemist/data/fasta/standardised/pka_set_grimsley_standardised.json -> build/bdist.linux-armv7l/wheel/pichemist/data/fasta/standardised 2024-05-29T16:41:02,195 copying build/lib/pichemist/data/fasta/standardised/pka_set_promost_standardised.json -> build/bdist.linux-armv7l/wheel/pichemist/data/fasta/standardised 2024-05-29T16:41:02,197 copying build/lib/pichemist/data/fasta/standardised/pka_set_thurlkill_standardised.json -> build/bdist.linux-armv7l/wheel/pichemist/data/fasta/standardised 2024-05-29T16:41:02,199 copying build/lib/pichemist/data/fasta/standardised/pka_set_emboss_standardised.json -> build/bdist.linux-armv7l/wheel/pichemist/data/fasta/standardised 2024-05-29T16:41:02,202 copying build/lib/pichemist/data/fasta/standardised/pka_set_nozaki_standardised.json -> build/bdist.linux-armv7l/wheel/pichemist/data/fasta/standardised 2024-05-29T16:41:02,204 copying build/lib/pichemist/data/fasta/standardised/pka_set_toseland_standardised.json -> build/bdist.linux-armv7l/wheel/pichemist/data/fasta/standardised 2024-05-29T16:41:02,206 copying build/lib/pichemist/data/fasta/standardised/pka_set_bjellqvist_standardised.json -> build/bdist.linux-armv7l/wheel/pichemist/data/fasta/standardised 2024-05-29T16:41:02,208 copying build/lib/pichemist/data/fasta/standardised/pka_set_gauci_standardised.json -> build/bdist.linux-armv7l/wheel/pichemist/data/fasta/standardised 2024-05-29T16:41:02,210 copying build/lib/pichemist/data/fasta/standardised/pka_set_lehninger_standardised.json -> build/bdist.linux-armv7l/wheel/pichemist/data/fasta/standardised 2024-05-29T16:41:02,213 copying build/lib/pichemist/data/fasta/standardised/pka_set_sillero_standardised.json -> build/bdist.linux-armv7l/wheel/pichemist/data/fasta/standardised 2024-05-29T16:41:02,215 copying build/lib/pichemist/data/fasta/standardised/pka_set_dtaselect_standardised.json -> build/bdist.linux-armv7l/wheel/pichemist/data/fasta/standardised 2024-05-29T16:41:02,217 copying build/lib/pichemist/data/fasta/standardised/pka_set_ipc_peptide_standardised.json -> build/bdist.linux-armv7l/wheel/pichemist/data/fasta/standardised 2024-05-29T16:41:02,219 copying build/lib/pichemist/data/fasta/standardised/pka_set_solomon_standardised.json -> build/bdist.linux-armv7l/wheel/pichemist/data/fasta/standardised 2024-05-29T16:41:02,221 copying build/lib/pichemist/data/fasta/standardised/pka_set_ipc2_peptide_standardised.json -> build/bdist.linux-armv7l/wheel/pichemist/data/fasta/standardised 2024-05-29T16:41:02,224 copying build/lib/pichemist/data/fasta/standardised/pka_set_dawson_standardised.json -> build/bdist.linux-armv7l/wheel/pichemist/data/fasta/standardised 2024-05-29T16:41:02,226 creating build/bdist.linux-armv7l/wheel/pichemist/pka 2024-05-29T16:41:02,227 copying build/lib/pichemist/pka/__init__.py -> build/bdist.linux-armv7l/wheel/pichemist/pka 2024-05-29T16:41:02,229 copying build/lib/pichemist/pka/pkamatcher.py -> build/bdist.linux-armv7l/wheel/pichemist/pka 2024-05-29T16:41:02,231 copying build/lib/pichemist/pka/acd.py -> build/bdist.linux-armv7l/wheel/pichemist/pka 2024-05-29T16:41:02,233 copying build/lib/pichemist/pka/utils.py -> build/bdist.linux-armv7l/wheel/pichemist/pka 2024-05-29T16:41:02,235 copying build/lib/pichemist/cli.py -> build/bdist.linux-armv7l/wheel/pichemist 2024-05-29T16:41:02,237 creating build/bdist.linux-armv7l/wheel/pichemist/fasta 2024-05-29T16:41:02,238 copying build/lib/pichemist/fasta/matcher.py -> build/bdist.linux-armv7l/wheel/pichemist/fasta 2024-05-29T16:41:02,241 copying build/lib/pichemist/fasta/scrambler.py -> build/bdist.linux-armv7l/wheel/pichemist/fasta 2024-05-29T16:41:02,243 copying build/lib/pichemist/fasta/pka_sets.py -> build/bdist.linux-armv7l/wheel/pichemist/fasta 2024-05-29T16:41:02,245 copying build/lib/pichemist/fasta/__init__.py -> build/bdist.linux-armv7l/wheel/pichemist/fasta 2024-05-29T16:41:02,246 copying build/lib/pichemist/fasta/helpers.py -> build/bdist.linux-armv7l/wheel/pichemist/fasta 2024-05-29T16:41:02,248 copying build/lib/pichemist/fasta/smarts.py -> build/bdist.linux-armv7l/wheel/pichemist/fasta 2024-05-29T16:41:02,250 copying build/lib/pichemist/config.py -> build/bdist.linux-armv7l/wheel/pichemist 2024-05-29T16:41:02,251 copying build/lib/pichemist/__init__.py -> build/bdist.linux-armv7l/wheel/pichemist 2024-05-29T16:41:02,253 copying build/lib/pichemist/stats.py -> build/bdist.linux-armv7l/wheel/pichemist 2024-05-29T16:41:02,255 copying build/lib/pichemist/core.py -> build/bdist.linux-armv7l/wheel/pichemist 2024-05-29T16:41:02,257 copying build/lib/pichemist/api.py -> build/bdist.linux-armv7l/wheel/pichemist 2024-05-29T16:41:02,259 copying build/lib/pichemist/molecule.py -> build/bdist.linux-armv7l/wheel/pichemist 2024-05-29T16:41:02,261 copying build/lib/pichemist/model.py -> build/bdist.linux-armv7l/wheel/pichemist 2024-05-29T16:41:02,263 copying build/lib/pichemist/utils.py -> build/bdist.linux-armv7l/wheel/pichemist 2024-05-29T16:41:02,265 running install_egg_info 2024-05-29T16:41:02,302 Copying pichemist.egg-info to build/bdist.linux-armv7l/wheel/pichemist-0.1.0-py3.11.egg-info 2024-05-29T16:41:02,315 running install_scripts 2024-05-29T16:41:02,331 creating build/bdist.linux-armv7l/wheel/pichemist-0.1.0.dist-info/WHEEL 2024-05-29T16:41:02,333 creating '/tmp/pip-wheel-0e2afroh/pichemist-0.1.0-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2024-05-29T16:41:02,335 adding 'pichemist/__init__.py' 2024-05-29T16:41:02,336 adding 'pichemist/api.py' 2024-05-29T16:41:02,338 adding 'pichemist/charges.py' 2024-05-29T16:41:02,339 adding 'pichemist/cli.py' 2024-05-29T16:41:02,341 adding 'pichemist/config.py' 2024-05-29T16:41:02,342 adding 'pichemist/core.py' 2024-05-29T16:41:02,344 adding 'pichemist/io.py' 2024-05-29T16:41:02,346 adding 'pichemist/isoelectric.py' 2024-05-29T16:41:02,347 adding 'pichemist/model.py' 2024-05-29T16:41:02,348 adding 'pichemist/molecule.py' 2024-05-29T16:41:02,350 adding 'pichemist/plot.py' 2024-05-29T16:41:02,351 adding 'pichemist/stats.py' 2024-05-29T16:41:02,352 adding 'pichemist/utils.py' 2024-05-29T16:41:02,354 adding 'pichemist/data/__pycache__/legacy_conversion.cpython-38.pyc' 2024-05-29T16:41:02,356 adding 'pichemist/data/fasta/convert_legacy_gauci_to_original_and_standardised.py' 2024-05-29T16:41:02,357 adding 'pichemist/data/fasta/convert_legacy_promost_into_standardised.py' 2024-05-29T16:41:02,358 adding 'pichemist/data/fasta/convert_legacy_short_set_to_original.py' 2024-05-29T16:41:02,360 adding 'pichemist/data/fasta/convert_original_short_set_to_standardised.py' 2024-05-29T16:41:02,361 adding 'pichemist/data/fasta/legacy_conversion.py' 2024-05-29T16:41:02,363 adding 'pichemist/data/fasta/legacy/aa_legend.tsv' 2024-05-29T16:41:02,364 adding 'pichemist/data/fasta/legacy/gauci.py' 2024-05-29T16:41:02,365 adding 'pichemist/data/fasta/legacy/promost.py' 2024-05-29T16:41:02,367 adding 'pichemist/data/fasta/legacy/short_pka_sets.py' 2024-05-29T16:41:02,369 adding 'pichemist/data/fasta/legacy/__pycache__/gauci.cpython-38.pyc' 2024-05-29T16:41:02,370 adding 'pichemist/data/fasta/legacy/__pycache__/promost.cpython-38.pyc' 2024-05-29T16:41:02,371 adding 'pichemist/data/fasta/legacy/__pycache__/short_pka_sets.cpython-38.pyc' 2024-05-29T16:41:02,373 adding 'pichemist/data/fasta/original_enriched/pka_set_gauci_original.json' 2024-05-29T16:41:02,375 adding 'pichemist/data/fasta/original_short/pka_set_bjellqvist_original.json' 2024-05-29T16:41:02,376 adding 'pichemist/data/fasta/original_short/pka_set_dawson_original.json' 2024-05-29T16:41:02,377 adding 'pichemist/data/fasta/original_short/pka_set_dtaselect_original.json' 2024-05-29T16:41:02,378 adding 'pichemist/data/fasta/original_short/pka_set_emboss_original.json' 2024-05-29T16:41:02,379 adding 'pichemist/data/fasta/original_short/pka_set_grimsley_original.json' 2024-05-29T16:41:02,381 adding 'pichemist/data/fasta/original_short/pka_set_ipc2_peptide_original.json' 2024-05-29T16:41:02,382 adding 'pichemist/data/fasta/original_short/pka_set_ipc_peptide_original.json' 2024-05-29T16:41:02,383 adding 'pichemist/data/fasta/original_short/pka_set_lehninger_original.json' 2024-05-29T16:41:02,384 adding 'pichemist/data/fasta/original_short/pka_set_nozaki_original.json' 2024-05-29T16:41:02,385 adding 'pichemist/data/fasta/original_short/pka_set_rodwell_original.json' 2024-05-29T16:41:02,386 adding 'pichemist/data/fasta/original_short/pka_set_sillero_original.json' 2024-05-29T16:41:02,387 adding 'pichemist/data/fasta/original_short/pka_set_solomon_original.json' 2024-05-29T16:41:02,389 adding 'pichemist/data/fasta/original_short/pka_set_thurlkill_original.json' 2024-05-29T16:41:02,390 adding 'pichemist/data/fasta/original_short/pka_set_toseland_original.json' 2024-05-29T16:41:02,392 adding 'pichemist/data/fasta/standardised/pka_set_bjellqvist_standardised.json' 2024-05-29T16:41:02,393 adding 'pichemist/data/fasta/standardised/pka_set_dawson_standardised.json' 2024-05-29T16:41:02,394 adding 'pichemist/data/fasta/standardised/pka_set_dtaselect_standardised.json' 2024-05-29T16:41:02,396 adding 'pichemist/data/fasta/standardised/pka_set_emboss_standardised.json' 2024-05-29T16:41:02,397 adding 'pichemist/data/fasta/standardised/pka_set_gauci_standardised.json' 2024-05-29T16:41:02,398 adding 'pichemist/data/fasta/standardised/pka_set_grimsley_standardised.json' 2024-05-29T16:41:02,399 adding 'pichemist/data/fasta/standardised/pka_set_ipc2_peptide_standardised.json' 2024-05-29T16:41:02,400 adding 'pichemist/data/fasta/standardised/pka_set_ipc_peptide_standardised.json' 2024-05-29T16:41:02,401 adding 'pichemist/data/fasta/standardised/pka_set_lehninger_standardised.json' 2024-05-29T16:41:02,403 adding 'pichemist/data/fasta/standardised/pka_set_nozaki_standardised.json' 2024-05-29T16:41:02,404 adding 'pichemist/data/fasta/standardised/pka_set_promost_standardised.json' 2024-05-29T16:41:02,405 adding 'pichemist/data/fasta/standardised/pka_set_rodwell_standardised.json' 2024-05-29T16:41:02,407 adding 'pichemist/data/fasta/standardised/pka_set_sillero_standardised.json' 2024-05-29T16:41:02,408 adding 'pichemist/data/fasta/standardised/pka_set_solomon_standardised.json' 2024-05-29T16:41:02,409 adding 'pichemist/data/fasta/standardised/pka_set_thurlkill_standardised.json' 2024-05-29T16:41:02,410 adding 'pichemist/data/fasta/standardised/pka_set_toseland_standardised.json' 2024-05-29T16:41:02,412 adding 'pichemist/data/smarts/convert_legacy_aa_smarts_to_standardised.py' 2024-05-29T16:41:02,413 adding 'pichemist/data/smarts/convert_legacy_ss_smarts_to_standardised.py' 2024-05-29T16:41:02,415 adding 'pichemist/data/smarts/legacy/smarts_naturalAAs.py' 2024-05-29T16:41:02,417 adding 'pichemist/data/smarts/legacy/smarts_notes.py' 2024-05-29T16:41:02,418 adding 'pichemist/data/smarts/legacy/smarts_pKaMatcher.dat' 2024-05-29T16:41:02,419 adding 'pichemist/data/smarts/legacy/smarts_pKaMatcher.py' 2024-05-29T16:41:02,422 adding 'pichemist/data/smarts/legacy/__pycache__/smarts_naturalAAs.cpython-38.pyc' 2024-05-29T16:41:02,423 adding 'pichemist/data/smarts/legacy/__pycache__/smarts_notes.cpython-38.pyc' 2024-05-29T16:41:02,424 adding 'pichemist/data/smarts/legacy/__pycache__/smarts_pKaMatcher.cpython-38.pyc' 2024-05-29T16:41:02,427 adding 'pichemist/data/smarts/standardised/aa_smarts_set_standardised.json' 2024-05-29T16:41:02,428 adding 'pichemist/data/smarts/standardised/ss_smarts_set_standardised.json' 2024-05-29T16:41:02,430 adding 'pichemist/fasta/__init__.py' 2024-05-29T16:41:02,431 adding 'pichemist/fasta/helpers.py' 2024-05-29T16:41:02,433 adding 'pichemist/fasta/matcher.py' 2024-05-29T16:41:02,434 adding 'pichemist/fasta/pka_sets.py' 2024-05-29T16:41:02,435 adding 'pichemist/fasta/scrambler.py' 2024-05-29T16:41:02,437 adding 'pichemist/fasta/smarts.py' 2024-05-29T16:41:02,439 adding 'pichemist/pka/__init__.py' 2024-05-29T16:41:02,440 adding 'pichemist/pka/acd.py' 2024-05-29T16:41:02,441 adding 'pichemist/pka/pkamatcher.py' 2024-05-29T16:41:02,442 adding 'pichemist/pka/utils.py' 2024-05-29T16:41:02,444 adding 'pichemist/smarts/__init__.py' 2024-05-29T16:41:02,445 adding 'pichemist/smarts/pka_set.py' 2024-05-29T16:41:02,448 adding 'pichemist-0.1.0.dist-info/LICENSE' 2024-05-29T16:41:02,450 adding 'pichemist-0.1.0.dist-info/METADATA' 2024-05-29T16:41:02,451 adding 'pichemist-0.1.0.dist-info/WHEEL' 2024-05-29T16:41:02,452 adding 'pichemist-0.1.0.dist-info/entry_points.txt' 2024-05-29T16:41:02,453 adding 'pichemist-0.1.0.dist-info/top_level.txt' 2024-05-29T16:41:02,455 adding 'pichemist-0.1.0.dist-info/RECORD' 2024-05-29T16:41:02,457 removing build/bdist.linux-armv7l/wheel 2024-05-29T16:41:02,603 Building wheel for pichemist (setup.py): finished with status 'done' 2024-05-29T16:41:02,606 Created wheel for pichemist: filename=pichemist-0.1.0-py3-none-any.whl size=74947 sha256=10ce770e0a009cb84b3c82ca75ecebb061677f32cc3a2a138a5f3c4baa41c1ab 2024-05-29T16:41:02,608 Stored in directory: /tmp/pip-ephem-wheel-cache-0de34zz3/wheels/a4/9f/f8/a0846487b9181b7404db146fe03e899b666cb9d9984ab6ecdf 2024-05-29T16:41:02,621 Successfully built pichemist 2024-05-29T16:41:02,626 Removed build tracker: '/tmp/pip-build-tracker-6xky7tsr'