2024-06-05T01:56:09,871 Created temporary directory: /tmp/pip-build-tracker-9i6kqs1p 2024-06-05T01:56:09,872 Initialized build tracking at /tmp/pip-build-tracker-9i6kqs1p 2024-06-05T01:56:09,873 Created build tracker: /tmp/pip-build-tracker-9i6kqs1p 2024-06-05T01:56:09,873 Entered build tracker: /tmp/pip-build-tracker-9i6kqs1p 2024-06-05T01:56:09,874 Created temporary directory: /tmp/pip-wheel-za15ha8j 2024-06-05T01:56:09,877 Created temporary directory: /tmp/pip-ephem-wheel-cache-rs8hom8q 2024-06-05T01:56:09,901 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2024-06-05T01:56:09,904 2 location(s) to search for versions of singlem: 2024-06-05T01:56:09,904 * https://pypi.org/simple/singlem/ 2024-06-05T01:56:09,904 * https://www.piwheels.org/simple/singlem/ 2024-06-05T01:56:09,905 Fetching project page and analyzing links: https://pypi.org/simple/singlem/ 2024-06-05T01:56:09,906 Getting page https://pypi.org/simple/singlem/ 2024-06-05T01:56:09,907 Found index url https://pypi.org/simple/ 2024-06-05T01:56:10,131 Fetched page https://pypi.org/simple/singlem/ as application/vnd.pypi.simple.v1+json 2024-06-05T01:56:10,136 Found link https://files.pythonhosted.org/packages/35/55/72780c79146b2ccd465016b28eccbe6c326493f5a8db3c489eda3382fbb1/singlem-0.7.1.tar.gz (from https://pypi.org/simple/singlem/), version: 0.7.1 2024-06-05T01:56:10,137 Found link https://files.pythonhosted.org/packages/17/8b/f553c11bbb3e950516589aa26299b85098d0ac78405a4ebacefa023de306/singlem-0.8.0.tar.gz (from https://pypi.org/simple/singlem/), version: 0.8.0 2024-06-05T01:56:10,138 Found link https://files.pythonhosted.org/packages/b6/f9/9538a096be3c2cc820642d87a626e45ce03f55716175025605b2d33f5e39/singlem-0.8.1.tar.gz (from https://pypi.org/simple/singlem/), version: 0.8.1 2024-06-05T01:56:10,138 Found link https://files.pythonhosted.org/packages/ca/c5/95b117cf1ebc381cf922280dd0aaaf9967777c903c8a079330728a278709/singlem-0.8.2.tar.gz (from https://pypi.org/simple/singlem/), version: 0.8.2 2024-06-05T01:56:10,139 Found link https://files.pythonhosted.org/packages/9d/8d/156892825f51ea215336c9171ba98ddd3003bc72538232c3e5cc20840b9c/singlem-0.9.0.tar.gz (from https://pypi.org/simple/singlem/), version: 0.9.0 2024-06-05T01:56:10,140 Found link https://files.pythonhosted.org/packages/9c/7c/bdc416d19613e03f631006b9e63355480dfd5438007172002652014dccd5/singlem-0.11.0.tar.gz (from https://pypi.org/simple/singlem/), version: 0.11.0 2024-06-05T01:56:10,140 Found link https://files.pythonhosted.org/packages/a3/67/58f5f073fa50c02cf0ccbade3bc0823976f29d12545e48a0b2f2c45288f9/singlem-0.12.0.tar.gz (from https://pypi.org/simple/singlem/), version: 0.12.0 2024-06-05T01:56:10,141 Found link https://files.pythonhosted.org/packages/68/8c/8bd9277ff17836d14658186469cb05376569f052f90cb3a82a449ac7eea4/singlem-0.12.1.tar.gz (from https://pypi.org/simple/singlem/), version: 0.12.1 2024-06-05T01:56:10,142 Skipping link: No binaries permitted for singlem: https://files.pythonhosted.org/packages/17/71/31b5c5d9541c9104d713a0eced18a124a696ee81f9f9dddd578e02b4380f/singlem-0.13.0-py3-none-any.whl (from https://pypi.org/simple/singlem/) 2024-06-05T01:56:10,143 Found link https://files.pythonhosted.org/packages/db/0b/e73e8b154bbca8f6fb81337791f7420b54b128f3682f9b394843c6559bbc/singlem-0.13.0.tar.gz (from https://pypi.org/simple/singlem/), version: 0.13.0 2024-06-05T01:56:10,143 Skipping link: No binaries permitted for singlem: https://files.pythonhosted.org/packages/9c/c2/59c1904feff0407c2ca5f1ec0ae098f42415c722f36cf01836c400a0e6ec/singlem-0.13.1-py3-none-any.whl (from https://pypi.org/simple/singlem/) 2024-06-05T01:56:10,144 Found link https://files.pythonhosted.org/packages/54/6a/d718c26f15b38a4b0e999f8246dcfcd5b7237c2298009031ebd18d7e2a7d/singlem-0.13.1.tar.gz (from https://pypi.org/simple/singlem/), version: 0.13.1 2024-06-05T01:56:10,145 Skipping link: No binaries permitted for singlem: https://files.pythonhosted.org/packages/aa/67/a4cf9b0c9f573201e887a91a98251ad31dace8433b735c7f698a9e94ebc0/singlem-0.13.2-py3-none-any.whl (from https://pypi.org/simple/singlem/) 2024-06-05T01:56:10,145 Found link https://files.pythonhosted.org/packages/2a/bb/75b1c30a8c30835d277ce6cacbd827fde3f094648bf6c5d4fff5d922b2f7/singlem-0.13.2.tar.gz (from https://pypi.org/simple/singlem/), version: 0.13.2 2024-06-05T01:56:10,146 Skipping link: No binaries permitted for singlem: https://files.pythonhosted.org/packages/50/5a/f72ef558f096a3c9706e30c3bd0dab98c42539b6d507b8e8554c4433edda/singlem-0.14.0-py3-none-any.whl (from https://pypi.org/simple/singlem/) 2024-06-05T01:56:10,147 Found link https://files.pythonhosted.org/packages/7c/7b/ca7227ef1d9151143a723d74b26bca4d18c6d60870348b4a4aee539ad343/singlem-0.14.0.tar.gz (from https://pypi.org/simple/singlem/), version: 0.14.0 2024-06-05T01:56:10,147 Skipping link: No binaries permitted for singlem: https://files.pythonhosted.org/packages/4c/a3/98cd7cfaef694f36655d9c8d193774e7d94fd9e0f6fc9d92f402fc88b898/singlem-0.15.0-py3-none-any.whl (from https://pypi.org/simple/singlem/) 2024-06-05T01:56:10,148 Found link https://files.pythonhosted.org/packages/b1/7c/e32b071b5a3f79fb69c39f9a172a179a3c5071e5344fc52387b561fbf38e/singlem-0.15.0.tar.gz (from https://pypi.org/simple/singlem/), version: 0.15.0 2024-06-05T01:56:10,148 Skipping link: No binaries permitted for singlem: https://files.pythonhosted.org/packages/fc/16/ea6f071e069d735d896eec440e65fdeaf88d69123893b1e7198bde08ba5e/singlem-0.15.1-py3-none-any.whl (from https://pypi.org/simple/singlem/) 2024-06-05T01:56:10,149 Found link https://files.pythonhosted.org/packages/ed/e7/34484f28ce4bb10dc929264cea43d5683c213858b91520243c197eba77b0/singlem-0.15.1.tar.gz (from https://pypi.org/simple/singlem/), version: 0.15.1 2024-06-05T01:56:10,149 Skipping link: No binaries permitted for singlem: https://files.pythonhosted.org/packages/22/91/db397eac675c00346bf5cd791b7bf0e7ce239b22ae55f255af6f35e34d7e/singlem-0.16.0-py3-none-any.whl (from https://pypi.org/simple/singlem/) 2024-06-05T01:56:10,150 Found link https://files.pythonhosted.org/packages/04/5a/0eb1e0bcf0d3fdeb87d543d86ef1c5cba4e5dedb4165a06f21b84e80f744/singlem-0.16.0.tar.gz (from https://pypi.org/simple/singlem/), version: 0.16.0 2024-06-05T01:56:10,151 Skipping link: No binaries permitted for singlem: https://files.pythonhosted.org/packages/f7/8b/22924e7ea1fdafa961cd2534919ae78fb024516d61e5c3f988bd1a92cd3c/singlem-0.17.0-py3-none-any.whl (from https://pypi.org/simple/singlem/) 2024-06-05T01:56:10,151 Found link https://files.pythonhosted.org/packages/a6/b9/168d5463ab41e4f0511b7fe868b80d019dcedb5c14b3b04eea91b39ab5e5/singlem-0.17.0.tar.gz (from https://pypi.org/simple/singlem/), version: 0.17.0 2024-06-05T01:56:10,152 Skipping link: No binaries permitted for singlem: https://files.pythonhosted.org/packages/f2/ff/e5fa9cd9e05e0d066f173a6d1f89a54fd749a192f1107bd24807abc20290/singlem-0.18.0-py3-none-any.whl (from https://pypi.org/simple/singlem/) 2024-06-05T01:56:10,153 Found link https://files.pythonhosted.org/packages/47/dd/5bc943ee3849e5e8d5be202fe563beb4e76604310f136c87a6524ee2d6c4/singlem-0.18.0.tar.gz (from https://pypi.org/simple/singlem/), version: 0.18.0 2024-06-05T01:56:10,153 Skipping link: No binaries permitted for singlem: https://files.pythonhosted.org/packages/84/1a/8a17c9c2a441e8ec94ac79f90d63cb2dfd994594fc9b0ac177dd4d511a78/singlem-1.0.0b8-py3-none-any.whl (from https://pypi.org/simple/singlem/) 2024-06-05T01:56:10,154 Found link https://files.pythonhosted.org/packages/3e/08/4fe229183f8c2c33255bcf7148fa79b6dd1d65453bcb99d37f82600441b7/singlem-1.0.0b8.tar.gz (from https://pypi.org/simple/singlem/), version: 1.0.0b8 2024-06-05T01:56:10,155 Fetching project page and analyzing links: https://www.piwheels.org/simple/singlem/ 2024-06-05T01:56:10,156 Getting page https://www.piwheels.org/simple/singlem/ 2024-06-05T01:56:10,157 Found index url https://www.piwheels.org/simple/ 2024-06-05T01:56:10,399 Fetched page https://www.piwheels.org/simple/singlem/ as text/html 2024-06-05T01:56:10,403 Skipping link: No binaries permitted for singlem: https://www.piwheels.org/simple/singlem/singlem-1.0.0b8-py3-none-any.whl#sha256=3365626c8cb55d23a5197a42572fbbb259c9dbc65b14a97f8e800c940b9a362c (from https://www.piwheels.org/simple/singlem/) 2024-06-05T01:56:10,404 Skipping link: No binaries permitted for singlem: https://www.piwheels.org/simple/singlem/singlem-0.17.0-py3-none-any.whl#sha256=b12f157af3e578d4a2bf5ab66f5f54ee0e66e9c9c611e08eace7e36119563e2a (from https://www.piwheels.org/simple/singlem/) 2024-06-05T01:56:10,405 Skipping link: No binaries permitted for singlem: https://www.piwheels.org/simple/singlem/singlem-0.16.0-py3-none-any.whl#sha256=899b9e72e567babdc8e689ef6c2676d7d7c58fecb2ebed82d413c75d17c4e410 (from https://www.piwheels.org/simple/singlem/) 2024-06-05T01:56:10,405 Skipping link: No binaries permitted for singlem: https://www.piwheels.org/simple/singlem/singlem-0.15.1-py3-none-any.whl#sha256=4cc1d3a1e437383de7a99970d08e9abdd2633314cf3a06760f8822d81533f512 (from https://www.piwheels.org/simple/singlem/) 2024-06-05T01:56:10,406 Skipping link: No binaries permitted for singlem: https://www.piwheels.org/simple/singlem/singlem-0.15.0-py3-none-any.whl#sha256=51ac005a1c09c7004e5639c3045e1313d39f7d8d4d77c417b63c8f4e243cec51 (from https://www.piwheels.org/simple/singlem/) 2024-06-05T01:56:10,406 Skipping link: No binaries permitted for singlem: https://www.piwheels.org/simple/singlem/singlem-0.14.0-py3-none-any.whl#sha256=184ece47180c793b14866826b9436d33ec0fd1d3c5e2cf5bf0c7625520509208 (from https://www.piwheels.org/simple/singlem/) 2024-06-05T01:56:10,407 Skipping link: No binaries permitted for singlem: https://www.piwheels.org/simple/singlem/singlem-0.13.2-py3-none-any.whl#sha256=0b410717882ab1cf12894ff799a530aaacb1eb2b69ad778355384c3ec5316bbb (from https://www.piwheels.org/simple/singlem/) 2024-06-05T01:56:10,407 Skipping link: No binaries permitted for singlem: https://www.piwheels.org/simple/singlem/singlem-0.13.1-py3-none-any.whl#sha256=950f2fc4d7e4eee5e75cc2bb2a5b7119aaa39590ee8c5fe9086ae0425a268fa3 (from https://www.piwheels.org/simple/singlem/) 2024-06-05T01:56:10,408 Skipping link: No binaries permitted for singlem: https://www.piwheels.org/simple/singlem/singlem-0.13.0-py3-none-any.whl#sha256=5f5cb853b85d738f19c8d06c769e4c1f5ae107ae7a2489c75185a7eeb3f0a9e6 (from https://www.piwheels.org/simple/singlem/) 2024-06-05T01:56:10,408 Skipping link: No binaries permitted for singlem: https://www.piwheels.org/simple/singlem/singlem-0.12.0-py3-none-any.whl#sha256=044eb417530be9293ed3640ebb56b5a2f8cfb34d2f8dab45e96556494cf0c2d5 (from https://www.piwheels.org/simple/singlem/) 2024-06-05T01:56:10,409 Skipping link: No binaries permitted for singlem: https://www.piwheels.org/simple/singlem/singlem-0.11.0-py3-none-any.whl#sha256=83c2697c65261566314896fee814840e77012597bb29405182cf4a3063711651 (from https://www.piwheels.org/simple/singlem/) 2024-06-05T01:56:10,409 Skipping link: No binaries permitted for singlem: https://www.piwheels.org/simple/singlem/singlem-0.9.0-py3-none-any.whl#sha256=bfb2dc9633dea53293af0244d04cb1bd0e981c01cfe3dce8cc5b7cd4cf9d7eb9 (from https://www.piwheels.org/simple/singlem/) 2024-06-05T01:56:10,410 Skipping link: No binaries permitted for singlem: https://www.piwheels.org/simple/singlem/singlem-0.8.2-py3-none-any.whl#sha256=9f7f2cf19f5d8b565a8641eed3e9925ee9112647c245999a6f685af7bfa1c001 (from https://www.piwheels.org/simple/singlem/) 2024-06-05T01:56:10,411 Skipping link: not a file: https://www.piwheels.org/simple/singlem/ 2024-06-05T01:56:10,411 Skipping link: not a file: https://pypi.org/simple/singlem/ 2024-06-05T01:56:10,433 Given no hashes to check 1 links for project 'singlem': discarding no candidates 2024-06-05T01:56:10,452 Collecting singlem==0.18.0 2024-06-05T01:56:10,455 Created temporary directory: /tmp/pip-unpack-88o44flf 2024-06-05T01:56:10,668 Downloading singlem-0.18.0.tar.gz (182 kB) 2024-06-05T01:56:10,905 Added singlem==0.18.0 from https://files.pythonhosted.org/packages/47/dd/5bc943ee3849e5e8d5be202fe563beb4e76604310f136c87a6524ee2d6c4/singlem-0.18.0.tar.gz to build tracker '/tmp/pip-build-tracker-9i6kqs1p' 2024-06-05T01:56:10,907 Running setup.py (path:/tmp/pip-wheel-za15ha8j/singlem_2bd2e56aeda64232947a3950ab59e60b/setup.py) egg_info for package singlem 2024-06-05T01:56:10,908 Created temporary directory: /tmp/pip-pip-egg-info-p47zze51 2024-06-05T01:56:10,909 Preparing metadata (setup.py): started 2024-06-05T01:56:10,910 Running command python setup.py egg_info 2024-06-05T01:56:11,848 running egg_info 2024-06-05T01:56:11,850 creating /tmp/pip-pip-egg-info-p47zze51/singlem.egg-info 2024-06-05T01:56:11,875 writing /tmp/pip-pip-egg-info-p47zze51/singlem.egg-info/PKG-INFO 2024-06-05T01:56:11,878 writing dependency_links to /tmp/pip-pip-egg-info-p47zze51/singlem.egg-info/dependency_links.txt 2024-06-05T01:56:11,880 writing requirements to /tmp/pip-pip-egg-info-p47zze51/singlem.egg-info/requires.txt 2024-06-05T01:56:11,881 writing top-level names to /tmp/pip-pip-egg-info-p47zze51/singlem.egg-info/top_level.txt 2024-06-05T01:56:11,882 writing manifest file '/tmp/pip-pip-egg-info-p47zze51/singlem.egg-info/SOURCES.txt' 2024-06-05T01:56:11,993 reading manifest file '/tmp/pip-pip-egg-info-p47zze51/singlem.egg-info/SOURCES.txt' 2024-06-05T01:56:11,995 reading manifest template 'MANIFEST.in' 2024-06-05T01:56:11,996 warning: no files found matching 'LICENSE' 2024-06-05T01:56:11,997 warning: no previously-included files matching '*' found under directory 'test' 2024-06-05T01:56:11,997 adding license file 'LICENCE.txt' 2024-06-05T01:56:12,000 writing manifest file '/tmp/pip-pip-egg-info-p47zze51/singlem.egg-info/SOURCES.txt' 2024-06-05T01:56:12,108 Preparing metadata (setup.py): finished with status 'done' 2024-06-05T01:56:12,112 Source in /tmp/pip-wheel-za15ha8j/singlem_2bd2e56aeda64232947a3950ab59e60b has version 0.18.0, which satisfies requirement singlem==0.18.0 from https://files.pythonhosted.org/packages/47/dd/5bc943ee3849e5e8d5be202fe563beb4e76604310f136c87a6524ee2d6c4/singlem-0.18.0.tar.gz 2024-06-05T01:56:12,113 Removed singlem==0.18.0 from https://files.pythonhosted.org/packages/47/dd/5bc943ee3849e5e8d5be202fe563beb4e76604310f136c87a6524ee2d6c4/singlem-0.18.0.tar.gz from build tracker '/tmp/pip-build-tracker-9i6kqs1p' 2024-06-05T01:56:12,118 Created temporary directory: /tmp/pip-unpack-mvx3ejz5 2024-06-05T01:56:12,119 Created temporary directory: /tmp/pip-unpack-2i7d6ikh 2024-06-05T01:56:12,135 Building wheels for collected packages: singlem 2024-06-05T01:56:12,139 Created temporary directory: /tmp/pip-wheel-933au4f0 2024-06-05T01:56:12,140 Building wheel for singlem (setup.py): started 2024-06-05T01:56:12,141 Destination directory: /tmp/pip-wheel-933au4f0 2024-06-05T01:56:12,142 Running command python setup.py bdist_wheel 2024-06-05T01:56:13,012 running bdist_wheel 2024-06-05T01:56:13,147 running build 2024-06-05T01:56:13,147 running build_py 2024-06-05T01:56:13,177 creating build 2024-06-05T01:56:13,177 creating build/lib 2024-06-05T01:56:13,178 creating build/lib/singlem 2024-06-05T01:56:13,179 copying singlem/graftm_result.py -> build/lib/singlem 2024-06-05T01:56:13,181 copying singlem/otu_table.py -> build/lib/singlem 2024-06-05T01:56:13,184 copying singlem/dereplicator.py -> build/lib/singlem 2024-06-05T01:56:13,185 copying singlem/version.py -> build/lib/singlem 2024-06-05T01:56:13,187 copying singlem/regenerator.py -> build/lib/singlem 2024-06-05T01:56:13,189 copying singlem/querier.py -> build/lib/singlem 2024-06-05T01:56:13,191 copying singlem/hmm_logo.py -> build/lib/singlem 2024-06-05T01:56:13,193 copying singlem/taxonomy_bihash.py -> build/lib/singlem 2024-06-05T01:56:13,195 copying singlem/summariser.py -> build/lib/singlem 2024-06-05T01:56:13,198 copying singlem/pipe_taxonomy_assigner_by_query.py -> build/lib/singlem 2024-06-05T01:56:13,200 copying singlem/genome_fasta_mux.py -> build/lib/singlem 2024-06-05T01:56:13,202 copying singlem/checkm2.py -> build/lib/singlem 2024-06-05T01:56:13,203 copying singlem/known_otu_table.py -> build/lib/singlem 2024-06-05T01:56:13,205 copying singlem/streaming_hmm_search_result.py -> build/lib/singlem 2024-06-05T01:56:13,207 copying singlem/pipe_sequence_extractor.py -> build/lib/singlem 2024-06-05T01:56:13,210 copying singlem/package_creator.py -> build/lib/singlem 2024-06-05T01:56:13,212 copying singlem/clusterer.py -> build/lib/singlem 2024-06-05T01:56:13,214 copying singlem/sequence_classes.py -> build/lib/singlem 2024-06-05T01:56:13,217 copying singlem/archive_otu_table.py -> build/lib/singlem 2024-06-05T01:56:13,219 copying singlem/query_formatters.py -> build/lib/singlem 2024-06-05T01:56:13,220 copying singlem/read_fraction.py -> build/lib/singlem 2024-06-05T01:56:13,222 copying singlem/sequence_extractor.py -> build/lib/singlem 2024-06-05T01:56:13,224 copying singlem/metapackage.py -> build/lib/singlem 2024-06-05T01:56:13,227 copying singlem/metagenome_otu_finder.py -> build/lib/singlem 2024-06-05T01:56:13,230 copying singlem/metapackage_read_name_store.py -> build/lib/singlem 2024-06-05T01:56:13,231 copying singlem/ordered_set.py -> build/lib/singlem 2024-06-05T01:56:13,233 copying singlem/supplement.py -> build/lib/singlem 2024-06-05T01:56:13,236 copying singlem/singlem.py -> build/lib/singlem 2024-06-05T01:56:13,238 copying singlem/genome_size.py -> build/lib/singlem 2024-06-05T01:56:13,240 copying singlem/singlem_database_models.py -> build/lib/singlem 2024-06-05T01:56:13,242 copying singlem/kingfisher_sra.py -> build/lib/singlem 2024-06-05T01:56:13,244 copying singlem/appraisal_result.py -> build/lib/singlem 2024-06-05T01:56:13,246 copying singlem/placement_parser.py -> build/lib/singlem 2024-06-05T01:56:13,248 copying singlem/orf_length_checker.py -> build/lib/singlem 2024-06-05T01:56:13,250 copying singlem/otu_table_entry.py -> build/lib/singlem 2024-06-05T01:56:13,251 copying singlem/trim_package_hmms.py -> build/lib/singlem 2024-06-05T01:56:13,253 copying singlem/diamond_spkg_searcher.py -> build/lib/singlem 2024-06-05T01:56:13,256 copying singlem/rarefier.py -> build/lib/singlem 2024-06-05T01:56:13,257 copying singlem/diamond_parser.py -> build/lib/singlem 2024-06-05T01:56:13,259 copying singlem/renew.py -> build/lib/singlem 2024-06-05T01:56:13,261 copying singlem/pipe.py -> build/lib/singlem 2024-06-05T01:56:13,266 copying singlem/condense.py -> build/lib/singlem 2024-06-05T01:56:13,269 copying singlem/chainsaw.py -> build/lib/singlem 2024-06-05T01:56:13,271 copying singlem/taxonomy.py -> build/lib/singlem 2024-06-05T01:56:13,273 copying singlem/strain_summariser.py -> build/lib/singlem 2024-06-05T01:56:13,275 copying singlem/sequence_database.py -> build/lib/singlem 2024-06-05T01:56:13,278 copying singlem/run_via_os_system.py -> build/lib/singlem 2024-06-05T01:56:13,280 copying singlem/otu_table_collection.py -> build/lib/singlem 2024-06-05T01:56:13,282 copying singlem/singlem_package.py -> build/lib/singlem 2024-06-05T01:56:13,284 copying singlem/__init__.py -> build/lib/singlem 2024-06-05T01:56:13,286 copying singlem/appraiser.py -> build/lib/singlem 2024-06-05T01:56:13,289 creating build/lib/singlem/biolib_lite 2024-06-05T01:56:13,290 copying singlem/biolib_lite/parallel.py -> build/lib/singlem/biolib_lite 2024-06-05T01:56:13,294 copying singlem/biolib_lite/common.py -> build/lib/singlem/biolib_lite 2024-06-05T01:56:13,296 copying singlem/biolib_lite/newick.py -> build/lib/singlem/biolib_lite 2024-06-05T01:56:13,298 copying singlem/biolib_lite/exceptions.py -> build/lib/singlem/biolib_lite 2024-06-05T01:56:13,300 copying singlem/biolib_lite/seq_io.py -> build/lib/singlem/biolib_lite 2024-06-05T01:56:13,302 copying singlem/biolib_lite/execute.py -> build/lib/singlem/biolib_lite 2024-06-05T01:56:13,304 copying singlem/biolib_lite/logger.py -> build/lib/singlem/biolib_lite 2024-06-05T01:56:13,306 copying singlem/biolib_lite/prodigal_biolib.py -> build/lib/singlem/biolib_lite 2024-06-05T01:56:13,309 copying singlem/biolib_lite/taxonomy.py -> build/lib/singlem/biolib_lite 2024-06-05T01:56:13,312 copying singlem/biolib_lite/custom_help_formatter.py -> build/lib/singlem/biolib_lite 2024-06-05T01:56:13,314 copying singlem/biolib_lite/__init__.py -> build/lib/singlem/biolib_lite 2024-06-05T01:56:13,315 running egg_info 2024-06-05T01:56:13,341 writing singlem.egg-info/PKG-INFO 2024-06-05T01:56:13,345 writing dependency_links to singlem.egg-info/dependency_links.txt 2024-06-05T01:56:13,347 writing requirements to singlem.egg-info/requires.txt 2024-06-05T01:56:13,348 writing top-level names to singlem.egg-info/top_level.txt 2024-06-05T01:56:13,380 reading manifest file 'singlem.egg-info/SOURCES.txt' 2024-06-05T01:56:13,383 reading manifest template 'MANIFEST.in' 2024-06-05T01:56:13,384 warning: no files found matching 'LICENSE' 2024-06-05T01:56:13,384 warning: no previously-included files matching '*' found under directory 'test' 2024-06-05T01:56:13,385 adding license file 'LICENCE.txt' 2024-06-05T01:56:13,389 writing manifest file 'singlem.egg-info/SOURCES.txt' 2024-06-05T01:56:13,394 running build_scripts 2024-06-05T01:56:13,394 creating build/scripts-3.11 2024-06-05T01:56:13,395 copying and adjusting bin/singlem -> build/scripts-3.11 2024-06-05T01:56:13,400 changing mode of build/scripts-3.11/singlem from 644 to 755 2024-06-05T01:56:13,428 /home/piwheels/.local/lib/python3.11/site-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. 2024-06-05T01:56:13,428 !! 2024-06-05T01:56:13,429 ******************************************************************************** 2024-06-05T01:56:13,430 Please avoid running ``setup.py`` directly. 2024-06-05T01:56:13,430 Instead, use pypa/build, pypa/installer or other 2024-06-05T01:56:13,431 standards-based tools. 2024-06-05T01:56:13,431 See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. 2024-06-05T01:56:13,432 ******************************************************************************** 2024-06-05T01:56:13,433 !! 2024-06-05T01:56:13,433 self.initialize_options() 2024-06-05T01:56:13,455 installing to build/bdist.linux-armv7l/wheel 2024-06-05T01:56:13,456 running install 2024-06-05T01:56:13,480 running install_lib 2024-06-05T01:56:13,508 creating build/bdist.linux-armv7l 2024-06-05T01:56:13,509 creating build/bdist.linux-armv7l/wheel 2024-06-05T01:56:13,511 creating build/bdist.linux-armv7l/wheel/singlem 2024-06-05T01:56:13,512 copying build/lib/singlem/graftm_result.py -> build/bdist.linux-armv7l/wheel/singlem 2024-06-05T01:56:13,514 copying build/lib/singlem/otu_table.py -> build/bdist.linux-armv7l/wheel/singlem 2024-06-05T01:56:13,516 copying build/lib/singlem/dereplicator.py -> build/bdist.linux-armv7l/wheel/singlem 2024-06-05T01:56:13,518 copying build/lib/singlem/version.py -> build/bdist.linux-armv7l/wheel/singlem 2024-06-05T01:56:13,520 copying build/lib/singlem/regenerator.py -> build/bdist.linux-armv7l/wheel/singlem 2024-06-05T01:56:13,522 copying build/lib/singlem/querier.py -> build/bdist.linux-armv7l/wheel/singlem 2024-06-05T01:56:13,525 copying build/lib/singlem/hmm_logo.py -> build/bdist.linux-armv7l/wheel/singlem 2024-06-05T01:56:13,527 copying build/lib/singlem/taxonomy_bihash.py -> build/bdist.linux-armv7l/wheel/singlem 2024-06-05T01:56:13,529 copying build/lib/singlem/summariser.py -> build/bdist.linux-armv7l/wheel/singlem 2024-06-05T01:56:13,532 copying build/lib/singlem/pipe_taxonomy_assigner_by_query.py -> build/bdist.linux-armv7l/wheel/singlem 2024-06-05T01:56:13,534 copying build/lib/singlem/genome_fasta_mux.py -> build/bdist.linux-armv7l/wheel/singlem 2024-06-05T01:56:13,536 copying build/lib/singlem/checkm2.py -> build/bdist.linux-armv7l/wheel/singlem 2024-06-05T01:56:13,538 copying build/lib/singlem/known_otu_table.py -> build/bdist.linux-armv7l/wheel/singlem 2024-06-05T01:56:13,540 copying build/lib/singlem/streaming_hmm_search_result.py -> build/bdist.linux-armv7l/wheel/singlem 2024-06-05T01:56:13,542 copying build/lib/singlem/pipe_sequence_extractor.py -> build/bdist.linux-armv7l/wheel/singlem 2024-06-05T01:56:13,545 copying build/lib/singlem/package_creator.py -> build/bdist.linux-armv7l/wheel/singlem 2024-06-05T01:56:13,547 copying build/lib/singlem/clusterer.py -> build/bdist.linux-armv7l/wheel/singlem 2024-06-05T01:56:13,550 copying build/lib/singlem/sequence_classes.py -> build/bdist.linux-armv7l/wheel/singlem 2024-06-05T01:56:13,552 copying build/lib/singlem/archive_otu_table.py -> build/bdist.linux-armv7l/wheel/singlem 2024-06-05T01:56:13,554 copying build/lib/singlem/query_formatters.py -> build/bdist.linux-armv7l/wheel/singlem 2024-06-05T01:56:13,556 copying build/lib/singlem/read_fraction.py -> build/bdist.linux-armv7l/wheel/singlem 2024-06-05T01:56:13,558 copying build/lib/singlem/sequence_extractor.py -> build/bdist.linux-armv7l/wheel/singlem 2024-06-05T01:56:13,560 copying build/lib/singlem/metapackage.py -> build/bdist.linux-armv7l/wheel/singlem 2024-06-05T01:56:13,562 copying build/lib/singlem/metagenome_otu_finder.py -> build/bdist.linux-armv7l/wheel/singlem 2024-06-05T01:56:13,564 copying build/lib/singlem/metapackage_read_name_store.py -> build/bdist.linux-armv7l/wheel/singlem 2024-06-05T01:56:13,566 copying build/lib/singlem/ordered_set.py -> build/bdist.linux-armv7l/wheel/singlem 2024-06-05T01:56:13,568 copying build/lib/singlem/supplement.py -> build/bdist.linux-armv7l/wheel/singlem 2024-06-05T01:56:13,571 copying build/lib/singlem/singlem.py -> build/bdist.linux-armv7l/wheel/singlem 2024-06-05T01:56:13,573 copying build/lib/singlem/genome_size.py -> build/bdist.linux-armv7l/wheel/singlem 2024-06-05T01:56:13,575 copying build/lib/singlem/singlem_database_models.py -> build/bdist.linux-armv7l/wheel/singlem 2024-06-05T01:56:13,577 copying build/lib/singlem/kingfisher_sra.py -> build/bdist.linux-armv7l/wheel/singlem 2024-06-05T01:56:13,579 copying build/lib/singlem/appraisal_result.py -> build/bdist.linux-armv7l/wheel/singlem 2024-06-05T01:56:13,582 copying build/lib/singlem/placement_parser.py -> build/bdist.linux-armv7l/wheel/singlem 2024-06-05T01:56:13,584 copying build/lib/singlem/orf_length_checker.py -> build/bdist.linux-armv7l/wheel/singlem 2024-06-05T01:56:13,586 copying build/lib/singlem/otu_table_entry.py -> build/bdist.linux-armv7l/wheel/singlem 2024-06-05T01:56:13,588 copying build/lib/singlem/trim_package_hmms.py -> build/bdist.linux-armv7l/wheel/singlem 2024-06-05T01:56:13,590 copying build/lib/singlem/diamond_spkg_searcher.py -> build/bdist.linux-armv7l/wheel/singlem 2024-06-05T01:56:13,592 copying build/lib/singlem/rarefier.py -> build/bdist.linux-armv7l/wheel/singlem 2024-06-05T01:56:13,594 copying build/lib/singlem/diamond_parser.py -> build/bdist.linux-armv7l/wheel/singlem 2024-06-05T01:56:13,596 copying build/lib/singlem/renew.py -> build/bdist.linux-armv7l/wheel/singlem 2024-06-05T01:56:13,599 copying build/lib/singlem/pipe.py -> build/bdist.linux-armv7l/wheel/singlem 2024-06-05T01:56:13,603 copying build/lib/singlem/condense.py -> build/bdist.linux-armv7l/wheel/singlem 2024-06-05T01:56:13,607 copying build/lib/singlem/chainsaw.py -> build/bdist.linux-armv7l/wheel/singlem 2024-06-05T01:56:13,609 copying build/lib/singlem/taxonomy.py -> build/bdist.linux-armv7l/wheel/singlem 2024-06-05T01:56:13,612 creating build/bdist.linux-armv7l/wheel/singlem/biolib_lite 2024-06-05T01:56:13,612 copying build/lib/singlem/biolib_lite/parallel.py -> build/bdist.linux-armv7l/wheel/singlem/biolib_lite 2024-06-05T01:56:13,615 copying build/lib/singlem/biolib_lite/common.py -> build/bdist.linux-armv7l/wheel/singlem/biolib_lite 2024-06-05T01:56:13,618 copying build/lib/singlem/biolib_lite/newick.py -> build/bdist.linux-armv7l/wheel/singlem/biolib_lite 2024-06-05T01:56:13,620 copying build/lib/singlem/biolib_lite/exceptions.py -> build/bdist.linux-armv7l/wheel/singlem/biolib_lite 2024-06-05T01:56:13,622 copying build/lib/singlem/biolib_lite/seq_io.py -> build/bdist.linux-armv7l/wheel/singlem/biolib_lite 2024-06-05T01:56:13,624 copying build/lib/singlem/biolib_lite/execute.py -> build/bdist.linux-armv7l/wheel/singlem/biolib_lite 2024-06-05T01:56:13,626 copying build/lib/singlem/biolib_lite/logger.py -> build/bdist.linux-armv7l/wheel/singlem/biolib_lite 2024-06-05T01:56:13,629 copying build/lib/singlem/biolib_lite/prodigal_biolib.py -> build/bdist.linux-armv7l/wheel/singlem/biolib_lite 2024-06-05T01:56:13,631 copying build/lib/singlem/biolib_lite/taxonomy.py -> build/bdist.linux-armv7l/wheel/singlem/biolib_lite 2024-06-05T01:56:13,634 copying build/lib/singlem/biolib_lite/custom_help_formatter.py -> build/bdist.linux-armv7l/wheel/singlem/biolib_lite 2024-06-05T01:56:13,636 copying build/lib/singlem/biolib_lite/__init__.py -> build/bdist.linux-armv7l/wheel/singlem/biolib_lite 2024-06-05T01:56:13,638 copying build/lib/singlem/strain_summariser.py -> build/bdist.linux-armv7l/wheel/singlem 2024-06-05T01:56:13,640 copying build/lib/singlem/sequence_database.py -> build/bdist.linux-armv7l/wheel/singlem 2024-06-05T01:56:13,643 copying build/lib/singlem/run_via_os_system.py -> build/bdist.linux-armv7l/wheel/singlem 2024-06-05T01:56:13,645 copying build/lib/singlem/otu_table_collection.py -> build/bdist.linux-armv7l/wheel/singlem 2024-06-05T01:56:13,647 copying build/lib/singlem/singlem_package.py -> build/bdist.linux-armv7l/wheel/singlem 2024-06-05T01:56:13,650 copying build/lib/singlem/__init__.py -> build/bdist.linux-armv7l/wheel/singlem 2024-06-05T01:56:13,652 copying build/lib/singlem/appraiser.py -> build/bdist.linux-armv7l/wheel/singlem 2024-06-05T01:56:13,654 running install_data 2024-06-05T01:56:13,683 creating build/bdist.linux-armv7l/wheel/singlem-0.18.0.data 2024-06-05T01:56:13,683 creating build/bdist.linux-armv7l/wheel/singlem-0.18.0.data/data 2024-06-05T01:56:13,684 copying README.md -> build/bdist.linux-armv7l/wheel/singlem-0.18.0.data/data/. 2024-06-05T01:56:13,686 copying LICENCE.txt -> build/bdist.linux-armv7l/wheel/singlem-0.18.0.data/data/. 2024-06-05T01:56:13,689 running install_egg_info 2024-06-05T01:56:13,725 Copying singlem.egg-info to build/bdist.linux-armv7l/wheel/singlem-0.18.0-py3.11.egg-info 2024-06-05T01:56:13,734 running install_scripts 2024-06-05T01:56:13,735 creating build/bdist.linux-armv7l/wheel/singlem-0.18.0.data/scripts 2024-06-05T01:56:13,736 copying build/scripts-3.11/singlem -> build/bdist.linux-armv7l/wheel/singlem-0.18.0.data/scripts 2024-06-05T01:56:13,740 changing mode of build/bdist.linux-armv7l/wheel/singlem-0.18.0.data/scripts/singlem to 755 2024-06-05T01:56:13,757 creating build/bdist.linux-armv7l/wheel/singlem-0.18.0.dist-info/WHEEL 2024-06-05T01:56:13,759 creating '/tmp/pip-wheel-933au4f0/singlem-0.18.0-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2024-06-05T01:56:13,763 adding 'singlem/__init__.py' 2024-06-05T01:56:13,766 adding 'singlem/appraisal_result.py' 2024-06-05T01:56:13,769 adding 'singlem/appraiser.py' 2024-06-05T01:56:13,770 adding 'singlem/archive_otu_table.py' 2024-06-05T01:56:13,772 adding 'singlem/chainsaw.py' 2024-06-05T01:56:13,774 adding 'singlem/checkm2.py' 2024-06-05T01:56:13,775 adding 'singlem/clusterer.py' 2024-06-05T01:56:13,781 adding 'singlem/condense.py' 2024-06-05T01:56:13,783 adding 'singlem/dereplicator.py' 2024-06-05T01:56:13,784 adding 'singlem/diamond_parser.py' 2024-06-05T01:56:13,786 adding 'singlem/diamond_spkg_searcher.py' 2024-06-05T01:56:13,787 adding 'singlem/genome_fasta_mux.py' 2024-06-05T01:56:13,788 adding 'singlem/genome_size.py' 2024-06-05T01:56:13,790 adding 'singlem/graftm_result.py' 2024-06-05T01:56:13,791 adding 'singlem/hmm_logo.py' 2024-06-05T01:56:13,792 adding 'singlem/kingfisher_sra.py' 2024-06-05T01:56:13,794 adding 'singlem/known_otu_table.py' 2024-06-05T01:56:13,796 adding 'singlem/metagenome_otu_finder.py' 2024-06-05T01:56:13,799 adding 'singlem/metapackage.py' 2024-06-05T01:56:13,800 adding 'singlem/metapackage_read_name_store.py' 2024-06-05T01:56:13,801 adding 'singlem/ordered_set.py' 2024-06-05T01:56:13,803 adding 'singlem/orf_length_checker.py' 2024-06-05T01:56:13,804 adding 'singlem/otu_table.py' 2024-06-05T01:56:13,806 adding 'singlem/otu_table_collection.py' 2024-06-05T01:56:13,808 adding 'singlem/otu_table_entry.py' 2024-06-05T01:56:13,809 adding 'singlem/package_creator.py' 2024-06-05T01:56:13,819 adding 'singlem/pipe.py' 2024-06-05T01:56:13,822 adding 'singlem/pipe_sequence_extractor.py' 2024-06-05T01:56:13,824 adding 'singlem/pipe_taxonomy_assigner_by_query.py' 2024-06-05T01:56:13,826 adding 'singlem/placement_parser.py' 2024-06-05T01:56:13,829 adding 'singlem/querier.py' 2024-06-05T01:56:13,831 adding 'singlem/query_formatters.py' 2024-06-05T01:56:13,832 adding 'singlem/rarefier.py' 2024-06-05T01:56:13,834 adding 'singlem/read_fraction.py' 2024-06-05T01:56:13,836 adding 'singlem/regenerator.py' 2024-06-05T01:56:13,837 adding 'singlem/renew.py' 2024-06-05T01:56:13,839 adding 'singlem/run_via_os_system.py' 2024-06-05T01:56:13,840 adding 'singlem/sequence_classes.py' 2024-06-05T01:56:13,845 adding 'singlem/sequence_database.py' 2024-06-05T01:56:13,846 adding 'singlem/sequence_extractor.py' 2024-06-05T01:56:13,847 adding 'singlem/singlem.py' 2024-06-05T01:56:13,849 adding 'singlem/singlem_database_models.py' 2024-06-05T01:56:13,851 adding 'singlem/singlem_package.py' 2024-06-05T01:56:13,852 adding 'singlem/strain_summariser.py' 2024-06-05T01:56:13,854 adding 'singlem/streaming_hmm_search_result.py' 2024-06-05T01:56:13,857 adding 'singlem/summariser.py' 2024-06-05T01:56:13,863 adding 'singlem/supplement.py' 2024-06-05T01:56:13,864 adding 'singlem/taxonomy.py' 2024-06-05T01:56:13,865 adding 'singlem/taxonomy_bihash.py' 2024-06-05T01:56:13,867 adding 'singlem/trim_package_hmms.py' 2024-06-05T01:56:13,868 adding 'singlem/version.py' 2024-06-05T01:56:13,870 adding 'singlem/biolib_lite/__init__.py' 2024-06-05T01:56:13,871 adding 'singlem/biolib_lite/common.py' 2024-06-05T01:56:13,873 adding 'singlem/biolib_lite/custom_help_formatter.py' 2024-06-05T01:56:13,874 adding 'singlem/biolib_lite/exceptions.py' 2024-06-05T01:56:13,875 adding 'singlem/biolib_lite/execute.py' 2024-06-05T01:56:13,877 adding 'singlem/biolib_lite/logger.py' 2024-06-05T01:56:13,878 adding 'singlem/biolib_lite/newick.py' 2024-06-05T01:56:13,880 adding 'singlem/biolib_lite/parallel.py' 2024-06-05T01:56:13,882 adding 'singlem/biolib_lite/prodigal_biolib.py' 2024-06-05T01:56:13,884 adding 'singlem/biolib_lite/seq_io.py' 2024-06-05T01:56:13,888 adding 'singlem/biolib_lite/taxonomy.py' 2024-06-05T01:56:13,895 adding 'singlem-0.18.0.data/data/LICENCE.txt' 2024-06-05T01:56:13,896 adding 'singlem-0.18.0.data/data/README.md' 2024-06-05T01:56:13,907 adding 'singlem-0.18.0.data/scripts/singlem' 2024-06-05T01:56:13,914 adding 'singlem-0.18.0.dist-info/LICENCE.txt' 2024-06-05T01:56:13,915 adding 'singlem-0.18.0.dist-info/METADATA' 2024-06-05T01:56:13,916 adding 'singlem-0.18.0.dist-info/WHEEL' 2024-06-05T01:56:13,917 adding 'singlem-0.18.0.dist-info/top_level.txt' 2024-06-05T01:56:13,919 adding 'singlem-0.18.0.dist-info/RECORD' 2024-06-05T01:56:13,923 removing build/bdist.linux-armv7l/wheel 2024-06-05T01:56:14,050 Building wheel for singlem (setup.py): finished with status 'done' 2024-06-05T01:56:14,055 Created wheel for singlem: filename=singlem-0.18.0-py3-none-any.whl size=218899 sha256=1242840cbfb61ba6c0a428bc2b6d5f4023200bd886a871bc4f3071e9265c60a2 2024-06-05T01:56:14,056 Stored in directory: /tmp/pip-ephem-wheel-cache-rs8hom8q/wheels/7d/c4/c0/90ba80d4263993503ba2620afeb728ebd45d428c583e6bfc15 2024-06-05T01:56:14,069 Successfully built singlem 2024-06-05T01:56:14,079 Removed build tracker: '/tmp/pip-build-tracker-9i6kqs1p'