2024-06-05T13:49:51,682 Created temporary directory: /tmp/pip-build-tracker-d0e702au
2024-06-05T13:49:51,683 Initialized build tracking at /tmp/pip-build-tracker-d0e702au
2024-06-05T13:49:51,683 Created build tracker: /tmp/pip-build-tracker-d0e702au
2024-06-05T13:49:51,684 Entered build tracker: /tmp/pip-build-tracker-d0e702au
2024-06-05T13:49:51,684 Created temporary directory: /tmp/pip-wheel-_se2_ibc
2024-06-05T13:49:51,687 Created temporary directory: /tmp/pip-ephem-wheel-cache-to5xrh2r
2024-06-05T13:49:51,711 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2024-06-05T13:49:51,715 2 location(s) to search for versions of moleculekit:
2024-06-05T13:49:51,715 * https://pypi.org/simple/moleculekit/
2024-06-05T13:49:51,715 * https://www.piwheels.org/simple/moleculekit/
2024-06-05T13:49:51,715 Fetching project page and analyzing links: https://pypi.org/simple/moleculekit/
2024-06-05T13:49:51,716 Getting page https://pypi.org/simple/moleculekit/
2024-06-05T13:49:51,718 Found index url https://pypi.org/simple/
2024-06-05T13:49:51,952 Fetched page https://pypi.org/simple/moleculekit/ as application/vnd.pypi.simple.v1+json
2024-06-05T13:49:51,994   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/91/e6/25b6853357dfef8a4026325e420d8213d34c17c078a2f13b60cbb6213ea3/moleculekit-0.1.4-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-06-05T13:49:51,995   Found link https://files.pythonhosted.org/packages/13/0f/a200e8e7632d3a521cfc7c15fa4d0270802efce40f98ac5a5cae58385b7e/moleculekit-0.1.4.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.4
2024-06-05T13:49:51,995   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/9f/a5/eac32fcb2e9ff0d30298aa4cec8e152c95d675c4dd1a1a5d7676986d4d75/moleculekit-0.1.5-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-06-05T13:49:51,996   Found link https://files.pythonhosted.org/packages/c5/6f/ae7d1b8513eb23ec0fa8e153c42fda0ee96f9e29c6e4808c5ff78c115e89/moleculekit-0.1.5.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.5
2024-06-05T13:49:51,996   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/e2/51/0f4e4b95d0d5c16664ede7f2cd31e6d6003e9c940a8fbe28c74de91de627/moleculekit-0.1.6-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-06-05T13:49:51,997   Found link https://files.pythonhosted.org/packages/08/fa/bc1b5918a1715901fd0ea1e796de9e6647276943983962616f2ddceb1c3b/moleculekit-0.1.6.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.6
2024-06-05T13:49:51,998   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/49/59/ddf780e7a574dde727d5db8b93c41bcc3d19436a8ae9f468bad5ea48529e/moleculekit-0.1.7-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-06-05T13:49:51,999   Found link https://files.pythonhosted.org/packages/c7/cb/d1b609de2d59d10a60ca74c9d1a044534f608e323dc16a87e5bd77ee0eb0/moleculekit-0.1.7.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.7
2024-06-05T13:49:52,000   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/5b/a4/59e6017c4e5b99be72d8e0eb6b6442061f338e309d91c25d607162298d11/moleculekit-0.1.8-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-06-05T13:49:52,000   Found link https://files.pythonhosted.org/packages/c0/1d/753c7461942457e39fb069504cdc381518a4ef18f486de0a42572236095e/moleculekit-0.1.8.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.8
2024-06-05T13:49:52,001   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/28/39/e4219020234475a17077f38ebcbdff236872d8e3a0455b376edb847f4141/moleculekit-0.1.9-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-06-05T13:49:52,002   Found link https://files.pythonhosted.org/packages/e0/c6/5d47b6257a3d1aca76d635d1dc8fffd6ed712fbe324bfeb2f2da47edda09/moleculekit-0.1.9.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.9
2024-06-05T13:49:52,002   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/3c/12/42a0a156c8a51b2ef9de7c720cbcd226c1b0a7d13dce7dcdd4c34480e05f/moleculekit-0.1.12-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-06-05T13:49:52,003   Found link https://files.pythonhosted.org/packages/12/9d/ef12aeb7165210a6d06f5a735640db6c49cda2597bebb3584e72f7a2aee5/moleculekit-0.1.12.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.12
2024-06-05T13:49:52,004   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/e0/de/ddea29e806547e8743801bd5b44f5f4b62e96a3b6aa1b59e7ae3c183e65d/moleculekit-0.1.14-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-06-05T13:49:52,004   Found link https://files.pythonhosted.org/packages/0f/b8/5dce8ade2a03ba18558275d58f1f586fc78b76442ca923e02e05b7aa4638/moleculekit-0.1.14.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.14
2024-06-05T13:49:52,005   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/98/67/c911fd0aab052ed8866739c282be96070bcafee75cad331165f356d0bf11/moleculekit-0.1.15-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-06-05T13:49:52,005   Found link https://files.pythonhosted.org/packages/be/5c/b803aa60ac93136e6fce9ab52ec50aec246481c5db76892780152f769d75/moleculekit-0.1.15.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.15
2024-06-05T13:49:52,006   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/4f/30/78d34f8541a5e0e7488b6d59c43b29cf4d9f42467553fb0cee41312409c7/moleculekit-0.1.16-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-06-05T13:49:52,007   Found link https://files.pythonhosted.org/packages/d3/39/0774efc740b7e6a6969e084e0eb126483049a60229de80cc09a1a4b78011/moleculekit-0.1.16.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.16
2024-06-05T13:49:52,007   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/ca/d8/f9dd491ee5984f59dbd1206bb41062543e1a1664bb002d4b2675ec3f882c/moleculekit-0.1.17-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-06-05T13:49:52,008   Found link https://files.pythonhosted.org/packages/f6/27/b820e1158e448f35830265eeb023ec7d7cc72272136a31ec5365a893174f/moleculekit-0.1.17.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.17
2024-06-05T13:49:52,009   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/0d/df/1d0dfd734e1d67c6ba1a1291b6f530c60eb3a65c25e2990d0fb62c73dbea/moleculekit-0.1.19-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-06-05T13:49:52,009   Found link https://files.pythonhosted.org/packages/6e/55/28d041ad7324e063e00ed2e0a5cd91d4c67e6cda3e62c24ab9c3ea2ad5dc/moleculekit-0.1.19.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.19
2024-06-05T13:49:52,010   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/f0/f3/18f3b015e5fdf04c0243d63132d4d29ab807b608bda9cab6de505c060196/moleculekit-0.1.21-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-06-05T13:49:52,011   Found link https://files.pythonhosted.org/packages/d7/2f/510d466d4e507523c6f8bb5323a03351e0a9e6422b29ab7a9d7b34101484/moleculekit-0.1.21.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.21
2024-06-05T13:49:52,011   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/2c/83/5bdc26bbc9c0dc6b7fa54260134f5545c6f8c01e50b4cc94de02d0a2f295/moleculekit-0.1.22-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-06-05T13:49:52,012   Found link https://files.pythonhosted.org/packages/28/80/3c053d293b0aad5df512b8c7bf1ef111c621ee80bbe08ea83763ca004a85/moleculekit-0.1.22.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.22
2024-06-05T13:49:52,013   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/5d/ec/9e6438a424607cba93fe71b89ef89dbff35369f133ed76ded895861ab290/moleculekit-0.1.23-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-06-05T13:49:52,013   Found link https://files.pythonhosted.org/packages/6d/c3/680633af7541d2c7ecf2fde4dc9661f107efaf55688d3f41d15407cb2248/moleculekit-0.1.23.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.23
2024-06-05T13:49:52,015   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/0b/02/f2bbd133b7e76a60bdc1d92d10621ce9f60f8eeaf97ed7dacae2e216cb2b/moleculekit-0.1.24-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-06-05T13:49:52,015   Found link https://files.pythonhosted.org/packages/7f/f7/48b8b09fbf6e368925a186ef4cb874ae0abfae6d5b81bd2656502290add5/moleculekit-0.1.24.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.24
2024-06-05T13:49:52,016   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/1e/bd/24146e575547d1fc8bd24b4b7d9a57cbe14c357ebf85d638df6421412465/moleculekit-0.1.26-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-06-05T13:49:52,016   Found link https://files.pythonhosted.org/packages/f5/6e/a9dafd4b3b109011d156a6f7c726925669e42435b6049859f3a0a050a87f/moleculekit-0.1.26.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.26
2024-06-05T13:49:52,017   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/fe/63/a0e65b18866805186e3a4ba2b8ece20b73b85ec1ce6b3f8597e0c2508178/moleculekit-0.1.27-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-06-05T13:49:52,017   Found link https://files.pythonhosted.org/packages/70/7e/a01a54d9e88eaf00ec47989f360fb98d58e871d500aa28c44b9c7b8bd7ff/moleculekit-0.1.27.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.27
2024-06-05T13:49:52,018   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/f1/db/8f0879b07acae5356393297640e1116c459d28b59d19e1bd328da94e4b7a/moleculekit-0.1.29-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-06-05T13:49:52,019   Found link https://files.pythonhosted.org/packages/dc/10/67c6720423554f257425330caf21342c13c59bc86aee634f369b481dad7b/moleculekit-0.1.29.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.29
2024-06-05T13:49:52,020   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/83/f1/2cb963c0a74d919761e8516fe969330c122c9874426ff8eef7834b9b0c62/moleculekit-0.1.30-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-06-05T13:49:52,020   Found link https://files.pythonhosted.org/packages/a9/87/cd070158b979d89c02edf2a1deb98ced11e6a442952ed67ebb4f281d6700/moleculekit-0.1.30.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.30
2024-06-05T13:49:52,021   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/cf/c4/f211cc80e281f1ee01040cfa490a65e874a54b5bedf2dfd73e3be6e72d93/moleculekit-0.1.31-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-06-05T13:49:52,022   Found link https://files.pythonhosted.org/packages/d7/8b/2b012f3371e5fceb875601e16c83a0ddfd5602d1cdceb953a4b36fc12200/moleculekit-0.1.31.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.31
2024-06-05T13:49:52,022   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/bf/2e/56178883cad4d2429d5cb5fb23d17be42663dea6da428df98f2b70be67a3/moleculekit-0.1.32-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-06-05T13:49:52,023   Found link https://files.pythonhosted.org/packages/97/34/992324fd9f1bb4d151b3383f601e3b69810e62c9d3530580ae8b43c4dcca/moleculekit-0.1.32.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.32
2024-06-05T13:49:52,024   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/7e/84/8e678afbcbd29c9b462973571bf3a043a7b5dbf7a98f1ac3dc82c3f5fc91/moleculekit-0.2.0-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-06-05T13:49:52,024   Found link https://files.pythonhosted.org/packages/10/f8/dfc9b84d16081239c0b6e3a2896e59db9f8b8617a67b7585e98789942324/moleculekit-0.2.0.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.0
2024-06-05T13:49:52,025   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/cb/a7/e706e1daa9d60d9ca9a96436564ec0612fe5fc850fdabad6e0c5174d52c5/moleculekit-0.2.1-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-06-05T13:49:52,026   Found link https://files.pythonhosted.org/packages/a8/ad/3c01c094324fcaf3a516aa3ab376ae4bec251dc2005f172217368e97b1db/moleculekit-0.2.1.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.1
2024-06-05T13:49:52,027   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/30/c3/e618404cdeb463f4f5f8fbfa1d5d45a81ea3c31cef86e9c6ca14a3d64589/moleculekit-0.2.2-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-06-05T13:49:52,027   Found link https://files.pythonhosted.org/packages/ce/2a/e4f0ea22c4e3be055409fbe8cda7802bd2cd1095926f62f2c78b7f447b46/moleculekit-0.2.2.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.2
2024-06-05T13:49:52,028   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/3c/c6/baf4c6dafa42a7f055cd29cad8a79b2e99baaf474e8ddcff833e02a8c9a2/moleculekit-0.2.3-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-06-05T13:49:52,028   Found link https://files.pythonhosted.org/packages/92/3b/d42fa900fbc359ad0b7806344c2eb303f06336fc6bad439db5550483ce5c/moleculekit-0.2.3.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.3
2024-06-05T13:49:52,029   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/d7/72/5674ef2a697583774eb66559f23b37026098badcc7e14bb09247c112baec/moleculekit-0.2.4-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-06-05T13:49:52,029   Found link https://files.pythonhosted.org/packages/7c/f3/5372063ddc10f57f1ea1aa29ab3f06d98d3d29c22d2a3d0c7c318ff7dc4a/moleculekit-0.2.4.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.4
2024-06-05T13:49:52,030   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/35/99/9bc21e28d9d4007623055b30fc43d18464649dfa39703ea80e9c32ba4607/moleculekit-0.2.5-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-06-05T13:49:52,031   Found link https://files.pythonhosted.org/packages/dd/7a/f6d8ac771d9e4c9117ab098a281231e6c4c3fadbbeafce69ac5b8370f2bd/moleculekit-0.2.5.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.5
2024-06-05T13:49:52,031   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/97/2d/1b5aeecf49f225f13c39534c7a93181f14bbb295f4b0bb50019d7efda717/moleculekit-0.2.6-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-06-05T13:49:52,032   Found link https://files.pythonhosted.org/packages/8a/04/f032c25621eac9ccab21dd25c0cb5d7150a21a5b0cde5ae21adb3e2be933/moleculekit-0.2.6.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.6
2024-06-05T13:49:52,033   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/7b/c3/6023b75cb8d60607d1932a6f3fa1fee5c99e88b692f25e3ed0072a4812a5/moleculekit-0.2.7-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-06-05T13:49:52,034   Found link https://files.pythonhosted.org/packages/a6/68/1eb4fb904763839ec4df4eab490702bd7245a6848ebfb693b165d5fbb153/moleculekit-0.2.7.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.7
2024-06-05T13:49:52,034   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/a3/85/452591c89b66659eaf24e216aef7818e3061a78bb1fc832f8616808949d4/moleculekit-0.2.8-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-06-05T13:49:52,035   Found link https://files.pythonhosted.org/packages/68/e0/0fe1302790061ea9e59370a988d67b877642c45a9e6d725819118cc3aae1/moleculekit-0.2.8.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.8
2024-06-05T13:49:52,036   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/90/90/238209bf8023d0779c0d4a9592786cc94e69d3dde60b5b17473d57c97b60/moleculekit-0.2.9-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-06-05T13:49:52,037   Found link https://files.pythonhosted.org/packages/bd/ad/aa7f2c7343506e17f61f2c4223dc912d4f099fdcc3e1736f393c9c31e118/moleculekit-0.2.9.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.9
2024-06-05T13:49:52,038   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/40/39/e7c3ea68289cf49ac58a53a55de11c71471a26c55268ce2a11dd3d0f4b1d/moleculekit-0.3.0-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-06-05T13:49:52,039   Found link https://files.pythonhosted.org/packages/9d/1e/99ffa0d73766a735c3e91d591c92537e37b0024cd9b1d745c4e5933563c1/moleculekit-0.3.0.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.3.0
2024-06-05T13:49:52,040   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/0e/6f/a11697b46e26552b60513aad11c1862ea314d1628ed83b3d1ea7cb552d51/moleculekit-0.3.1-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
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2024-06-05T13:49:52,050   Found link https://files.pythonhosted.org/packages/67/47/5f9440683e69c1612d117c957044f665b4e025bffab93251e31444529fa6/moleculekit-0.4.0.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.4.0
2024-06-05T13:49:52,051   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/45/48/d6f7e3ff07d4e04aced25dc1e28790e8d1d2aa95ccd0db0f0043e354f0de/moleculekit-0.4.2-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
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2024-06-05T13:49:52,085   Found link https://files.pythonhosted.org/packages/5c/b2/944d529319db190e13234dd2337bff23b7a7c3c1a98b2a95eb08fc802530/moleculekit-0.9.7.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.9.7
2024-06-05T13:49:52,086   Found link https://files.pythonhosted.org/packages/42/0a/fbfa3d5c838ad716fdcb9b5ad55bddb6dccd74c5c281ac171be93b0f58e2/moleculekit-0.9.8.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.9.8
2024-06-05T13:49:52,086   Found link https://files.pythonhosted.org/packages/15/e0/93b4cc5e997a9e4e01fd39f00548f04e3f068961abba30f82fc04aa828ac/moleculekit-0.9.9.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.9.9
2024-06-05T13:49:52,087   Found link https://files.pythonhosted.org/packages/7f/58/2f04c5387c3c23e5c46f71741f7655c380b01c6f88aad7b5e945943c3fd1/moleculekit-0.9.12.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.9.12
2024-06-05T13:49:52,088   Found link https://files.pythonhosted.org/packages/b5/7c/fde4b7b8c9cd6683036e87727f341a0c9de5dae09f324dfa1bc2aa2a6de0/moleculekit-0.9.13.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.9.13
2024-06-05T13:49:52,089   Found link https://files.pythonhosted.org/packages/8e/f7/39a1290893da55d759e629ea6d9e2509fe6c3a06538d3f80cca590859647/moleculekit-0.9.14.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.9.14
2024-06-05T13:49:52,089   Found link https://files.pythonhosted.org/packages/02/6e/108b002ecb68c789d690492a02ced311cea625fdd642348e5cd75bd25fdb/moleculekit-0.9.15.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.9.15
2024-06-05T13:49:52,090   Found link https://files.pythonhosted.org/packages/62/51/f195a9d66dab99b8f6bd30fe5f65f63c65e65ded97c8fd20bf0cda822ee1/moleculekit-0.10.0.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.10.0
2024-06-05T13:49:52,091   Found link https://files.pythonhosted.org/packages/19/73/98bfd38e7d5823dc1d21ca3557d9f599b09926d252b22e215688677fe1eb/moleculekit-1.0.0.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.0.0
2024-06-05T13:49:52,092   Found link https://files.pythonhosted.org/packages/fc/d7/f3aa2dd40f165c1b67401587414deb33e80764835dfe2abb16b9b1d167bf/moleculekit-1.0.1.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.0.1
2024-06-05T13:49:52,092   Found link https://files.pythonhosted.org/packages/19/54/5ec72761331cfeea3e48a65f0dc30f7c21ec586f6d2b904339c262abafd8/moleculekit-1.0.2.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.0.2
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2024-06-05T13:49:52,093   Found link https://files.pythonhosted.org/packages/07/ab/e6c8a654329cb5fc7cf2d91d47934a6f53ec8b34276e96128f9961147a6a/moleculekit-1.0.4.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.0.4
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2024-06-05T13:49:52,094   Found link https://files.pythonhosted.org/packages/28/2f/61d6e171e7b0309a94b3920b2743e5b6990d24a4870a5b1caf39f0e34338/moleculekit-1.0.6.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.0.6
2024-06-05T13:49:52,095   Found link https://files.pythonhosted.org/packages/6d/1e/bbd2d882b353e673f44897179ab0b6e76df9c2a657d25d47090dbdce76d3/moleculekit-1.0.7.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.0.7
2024-06-05T13:49:52,095   Found link https://files.pythonhosted.org/packages/61/45/acbe2272378c87f0796b1ebcba0673a13acc5ed87eb0d29fa16e1bfe54cf/moleculekit-1.0.8.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.0.8
2024-06-05T13:49:52,096   Found link https://files.pythonhosted.org/packages/72/48/3df4bcf3a3e5ca9c0e05e5486c0a7da3b7d6b3ff49830d473b6e72f02443/moleculekit-1.0.9.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.0.9
2024-06-05T13:49:52,097   Found link https://files.pythonhosted.org/packages/09/29/7e58bdf57dda487be8ab4c3719ebbf31db17ad65232fc9305a20eaa3c90c/moleculekit-1.1.0.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.1.0
2024-06-05T13:49:52,097   Found link https://files.pythonhosted.org/packages/3c/b6/64b6ae76e4b562d453b31fd28678232838949d56f1dafabd12531362de23/moleculekit-1.1.1.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.1.1
2024-06-05T13:49:52,098   Found link https://files.pythonhosted.org/packages/15/f8/fb94ef622b57eea44916cbed8a838efcbbd62c9732879ec4864c3abaf3d0/moleculekit-1.1.2.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.1.2
2024-06-05T13:49:52,099   Found link https://files.pythonhosted.org/packages/85/87/2264a91838fc8d44f1661b9ae462976e2b9b23f002591db7be9287f51d43/moleculekit-1.1.4.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.1.4
2024-06-05T13:49:52,099   Found link https://files.pythonhosted.org/packages/f4/53/156ee257b5781f55228ef884eec2b57cc368dbf37c4654315347af0e7a71/moleculekit-1.1.6.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.1.6
2024-06-05T13:49:52,100   Found link https://files.pythonhosted.org/packages/71/3c/15df00803c890b9d17390a31c60fa2c070a88e8a8c33c79ef10ddf023159/moleculekit-1.1.7.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.1.7
2024-06-05T13:49:52,101   Found link https://files.pythonhosted.org/packages/eb/2e/c50f42aefc5f3510073bd5059723baff738a5ee171174441586000c444dc/moleculekit-1.1.8.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.1.8
2024-06-05T13:49:52,101   Found link https://files.pythonhosted.org/packages/59/b9/6e9913fc67fa6321d5c441eb59a93e257f1fba383848a6bd645a7d427045/moleculekit-1.1.9.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.1.9
2024-06-05T13:49:52,102   Found link https://files.pythonhosted.org/packages/06/90/69685dad023515e231d8da7747793f33c497bb62496c4075e518f230da55/moleculekit-1.2.0.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.2.0
2024-06-05T13:49:52,103   Found link https://files.pythonhosted.org/packages/1a/07/36426e9820ea0ecff884e15fc9ebe413735a2b22a9212cdcbb9b62e56744/moleculekit-1.2.1.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.2.1
2024-06-05T13:49:52,104   Found link https://files.pythonhosted.org/packages/a1/56/2e1ac2fac4f566abf327baf326d17421047e363138c1c132a537a3eaf5ec/moleculekit-1.2.2.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.2.2
2024-06-05T13:49:52,104   Found link https://files.pythonhosted.org/packages/cb/28/b8fa8b94edf207d206627fcb18753ce3fad1450d7d5e5b052daa211b226b/moleculekit-1.2.4.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.2.4
2024-06-05T13:49:52,105   Found link https://files.pythonhosted.org/packages/cb/c9/8d7c9c427863a8e1be9e5487520f26a4ea63a34e735a3c5598f1e8b43cb4/moleculekit-1.2.5.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.2.5
2024-06-05T13:49:52,105   Found link https://files.pythonhosted.org/packages/39/b3/50e46e2780075c4adf93bba603ad047457f3d9cd70a77f4909776ec446b3/moleculekit-1.2.7.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.2.7
2024-06-05T13:49:52,106   Found link https://files.pythonhosted.org/packages/29/f1/10cd916b3024b2efe08c06413dff5938859e01c8bc671cde8bf070758031/moleculekit-1.2.8.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.2.8
2024-06-05T13:49:52,107   Found link https://files.pythonhosted.org/packages/47/55/207179562e46a3cba4a1cb813c1754be6c5a1664a11d1dcffe89b51c1ca4/moleculekit-1.2.9.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.2.9
2024-06-05T13:49:52,107   Found link https://files.pythonhosted.org/packages/2e/1c/a07b4d5f471fc90ba12e88e44675ddbf0ba4b0a658c2fc014491a7a27092/moleculekit-1.3.0.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.3.0
2024-06-05T13:49:52,108   Found link https://files.pythonhosted.org/packages/80/9b/d0375ea58246506494224acf560e8d2da623d1635047089316a01ab146a0/moleculekit-1.3.1.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.3.1
2024-06-05T13:49:52,109   Found link https://files.pythonhosted.org/packages/f9/f6/5808fddfaeeb3c021514c45f1b896329245c2e1c6218a86b9bc9f1904d7d/moleculekit-1.3.3.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.3.3
2024-06-05T13:49:52,109   Found link https://files.pythonhosted.org/packages/0f/87/45be2661273532639b9aef46f7335ef962ac0f4d5a022cad9fae46b3ed76/moleculekit-1.3.4.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.3.4
2024-06-05T13:49:52,110   Found link https://files.pythonhosted.org/packages/0b/c2/d5b36c664c2d4f8736b5dbf06b05d9efeeacd4d488125c8feb0e4efb3594/moleculekit-1.3.5.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.3.5
2024-06-05T13:49:52,111   Found link https://files.pythonhosted.org/packages/30/3d/7f0577f2f4fd87df9160c6c80c49fe7d025f40b9f25c6b6d9ed0bcd2341f/moleculekit-1.3.7.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.3.7
2024-06-05T13:49:52,112   Found link https://files.pythonhosted.org/packages/1a/fd/3788664397288c8169d713da13ae2419a0534a9ee826d1ce718811e27569/moleculekit-1.3.8.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.3.8
2024-06-05T13:49:52,112   Found link https://files.pythonhosted.org/packages/fe/a6/b9b3e9ec27de783731911f111354a9d1e6cd766e47aeff934b769a415311/moleculekit-1.3.9.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.3.9
2024-06-05T13:49:52,113   Found link https://files.pythonhosted.org/packages/fd/8d/5420b8fc8713c9a27e74eb85aab9b758169f739c0d6aca1540d73582aba6/moleculekit-1.4.0.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.4.0
2024-06-05T13:49:52,113   Found link https://files.pythonhosted.org/packages/68/7e/cd023ea3b0a765a65611a8b103d51dbb55fc97bb9df335095d520ad46deb/moleculekit-1.4.1.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.4.1
2024-06-05T13:49:52,114   Found link https://files.pythonhosted.org/packages/21/ce/d98ddf9106565632f876b1b853bb23c64534e65884b9d3d73208c7fe17e6/moleculekit-1.4.2.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.4.2
2024-06-05T13:49:52,115   Found link https://files.pythonhosted.org/packages/f9/12/68450058da1b4f39328ce41f22cfb5a38717147b3e624cb76b225318dd96/moleculekit-1.4.3.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.4.3
2024-06-05T13:49:52,116   Found link https://files.pythonhosted.org/packages/a1/9c/61a877e38393372a16746096dc836e3a24d0fe31240644258396f6ec1dd5/moleculekit-1.4.5-1.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.4.5-1
2024-06-05T13:49:52,116   Found link https://files.pythonhosted.org/packages/65/2b/f8fbac2b196d899066e4d26b78e62adc1f2356734b3de63da153e9b18e44/moleculekit-1.4.6.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.4.6
2024-06-05T13:49:52,117   Found link https://files.pythonhosted.org/packages/6b/80/69b1d49f78060edafdb9a5e49080f189c6d72a7a2a83f2567f7abfaf9fcb/moleculekit-1.4.7.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.4.7
2024-06-05T13:49:52,118   Found link https://files.pythonhosted.org/packages/91/bd/4e692bc271e6a957732a20347e43f0388e12ab60df6717a178b628f18fce/moleculekit-1.4.8.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.4.8
2024-06-05T13:49:52,119   Found link https://files.pythonhosted.org/packages/0b/22/49372d8ecca8baa50e08ca3971786e207825556920bd5b19697d085bf681/moleculekit-1.4.9.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.4.9
2024-06-05T13:49:52,120   Found link https://files.pythonhosted.org/packages/3a/52/c87b6f8651063e38a723e8506788475ecf32f2b2e67fcf42739e8737f120/moleculekit-1.5.0.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.5.0
2024-06-05T13:49:52,121   Found link https://files.pythonhosted.org/packages/e9/64/50b82745c79e8f28fb8c1615e637221dceb4af565af8e785b04b5c9bd7f0/moleculekit-1.5.1.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.5.1
2024-06-05T13:49:52,122   Found link https://files.pythonhosted.org/packages/3d/18/e249854f20e449b9890eca08ef37ccdb87f719b6ac0db8e9d2ca9c4eb890/moleculekit-1.5.2.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.5.2
2024-06-05T13:49:52,123   Found link https://files.pythonhosted.org/packages/3f/e8/860f3b89afd29b5ba405ab028f3d49ac22e95557b6b906e475c2f6558df5/moleculekit-1.5.3.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.5.3
2024-06-05T13:49:52,124   Found link https://files.pythonhosted.org/packages/e7/1e/8f982d3446852e3778250fc8af491eb3ceaf081b891eb7a4936776dfe730/moleculekit-1.5.4.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.5.4
2024-06-05T13:49:52,125   Found link https://files.pythonhosted.org/packages/46/81/f7be4e086eb469d0fda5d9be51c6fe2107d39c4127f64218774c40f5923a/moleculekit-1.5.5.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.5.5
2024-06-05T13:49:52,126   Found link https://files.pythonhosted.org/packages/d1/99/5866f661f25b1168804a5c26ab38edd26a7239d91b84c13fb129c1f84ab6/moleculekit-1.5.6.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.5.6
2024-06-05T13:49:52,127   Found link https://files.pythonhosted.org/packages/25/45/e228ef66e7b03b1613382490f07c3db31c9713e3878eb9766781076b8209/moleculekit-1.5.7.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.5.7
2024-06-05T13:49:52,128   Found link https://files.pythonhosted.org/packages/5e/4a/8e20ee9556cfcdc8c51aac44a054b76db1b9abf8c83124f51521397f7673/moleculekit-1.5.8.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.5.8
2024-06-05T13:49:52,129   Found link https://files.pythonhosted.org/packages/00/79/eafaf1a45594ebe0f5e3e3a775bb8e4635dd46e63a048cc577a4e3c4c29b/moleculekit-1.6.0.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.6.0
2024-06-05T13:49:52,130   Found link https://files.pythonhosted.org/packages/c2/66/b802cbaa73639d3fb24d7aca0a21b932bd6b781103c3aa0662fd27dd64e0/moleculekit-1.6.1.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.6.1
2024-06-05T13:49:52,131   Found link https://files.pythonhosted.org/packages/01/31/1debf4b7c89e0060dc1f7d19ab348e627b9183890a8e443c1ee54ee3bd6c/moleculekit-1.6.4.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.6.4
2024-06-05T13:49:52,132   Found link https://files.pythonhosted.org/packages/d6/3a/77427acaba2c2b4670a4b94ce5cd161b60ac547e812a6337374265f3272d/moleculekit-1.6.5.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.6.5
2024-06-05T13:49:52,132   Found link https://files.pythonhosted.org/packages/75/c9/3ed46001d1cc28d02ee2ee30de3377bc39f9545ea0a7b7932b6c31770879/moleculekit-1.6.6.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.6.6
2024-06-05T13:49:52,133   Found link https://files.pythonhosted.org/packages/b0/eb/47f199ab494f4a3929e1265222e24dcfce4dc2dde54923d1be8e513bf765/moleculekit-1.6.7.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.6.7
2024-06-05T13:49:52,134   Found link https://files.pythonhosted.org/packages/02/62/8710bf8c331f6c5d3320bcd99ce1f53fd72c8ed39767e69fe09127926c58/moleculekit-1.6.8.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.6.8
2024-06-05T13:49:52,135   Found link https://files.pythonhosted.org/packages/bd/54/7eaec59ff225b186934cbe0ea2e709af1864cac674dc9c8f2e7cf2d8adeb/moleculekit-1.6.9.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.6.9
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2024-06-05T13:49:52,137   Found link https://files.pythonhosted.org/packages/4e/3a/29fb1aa0e3792fef88348885348370f39af453fb75d5505a208068d1c4ac/moleculekit-1.7.1.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.1
2024-06-05T13:49:52,138   Found link https://files.pythonhosted.org/packages/4a/13/dd6711d592d27e604c48830300f5596aafa1bbc479dc5eb49ed9797085eb/moleculekit-1.7.2.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.2
2024-06-05T13:49:52,139   Found link https://files.pythonhosted.org/packages/c7/cb/205d8925276863e2892c2c1ae2747cd4834cd3f174521172670ce43b50b8/moleculekit-1.7.3.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.3
2024-06-05T13:49:52,140   Found link https://files.pythonhosted.org/packages/6f/9e/2bce5993679a3666fd12803b93bb9a4daa59922f0ecdd26e9726df5d7f73/moleculekit-1.7.4.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.4
2024-06-05T13:49:52,141   Found link https://files.pythonhosted.org/packages/fa/63/993d55964a5afc9417ca31ab06a7d08f10b8fb38c63157bef0f350b4bb49/moleculekit-1.7.6.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.6
2024-06-05T13:49:52,142   Found link https://files.pythonhosted.org/packages/9b/3d/351d6444550ae455f20139e1d71ab138449c75b4a9782ac831dc9c6daa76/moleculekit-1.7.7.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.7
2024-06-05T13:49:52,143   Found link https://files.pythonhosted.org/packages/1b/7a/80d740239c506d7eea7cdba7576c503012556338861c10d5d2908e1912f7/moleculekit-1.7.8.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.8
2024-06-05T13:49:52,144   Found link https://files.pythonhosted.org/packages/05/e0/64dd3801f9b9cd011f8093d85201df3b259bab3502b87b6e37edadea0f21/moleculekit-1.7.9.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.9
2024-06-05T13:49:52,145   Found link https://files.pythonhosted.org/packages/0e/fd/650680f6dcf164b179c8a334c56fc7ba97d71519330f03bdc485307b6a0d/moleculekit-1.7.10.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.10
2024-06-05T13:49:52,146   Found link https://files.pythonhosted.org/packages/37/05/3105db0d4a63b49d0f4534b5e9d6a488b96b83b3aac621224338f3a6aa6b/moleculekit-1.7.12.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.12
2024-06-05T13:49:52,147   Found link https://files.pythonhosted.org/packages/08/ec/48d8122fea93c59592ae22dc29f16496087cdf31064793e6da173fcf2e36/moleculekit-1.7.13.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.13
2024-06-05T13:49:52,148   Found link https://files.pythonhosted.org/packages/46/79/442f4846c44e99a4e5d61b09e65cb57ec69b24ae4bf7e8b704f125238c6c/moleculekit-1.7.14.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.14
2024-06-05T13:49:52,149   Found link https://files.pythonhosted.org/packages/fa/fd/aa5c1911df4cf3bee9575fbc1cdbd39bcb1d9164e77c772fa938be672cc0/moleculekit-1.7.15.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.15
2024-06-05T13:49:52,150   Found link https://files.pythonhosted.org/packages/38/fe/74b265e75deb09844035690d506614163cd262a2d6bc7c83b4e2f28d4bb9/moleculekit-1.7.16.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.16
2024-06-05T13:49:52,151   Found link https://files.pythonhosted.org/packages/8b/2f/56c308933a9652bc40c41a53d57509ef38cc3c21d55b6f5570c2d9a865ed/moleculekit-1.7.17.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.17
2024-06-05T13:49:52,151   Found link https://files.pythonhosted.org/packages/96/a3/11b655506ce842ebea0b6d4c86883a538095687cb7bc9c4a179420971bd7/moleculekit-1.8.1.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.1
2024-06-05T13:49:52,152   Found link https://files.pythonhosted.org/packages/9d/d3/ead35117c0f3b3b1be847d561ff31bf59dfde0c49982bff106a3cc3876f0/moleculekit-1.8.2.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.2
2024-06-05T13:49:52,154   Found link https://files.pythonhosted.org/packages/23/e8/3ebe2bfb667296b1c79d4e59fdfb487116bfd8bec579ca242eec7ecad0c2/moleculekit-1.8.3.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.3
2024-06-05T13:49:52,155   Found link https://files.pythonhosted.org/packages/6f/4d/4a0e90a65d79829ae0bec8d857de2f8b7e18b6d60e05daa99cdbed0061c0/moleculekit-1.8.4.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.4
2024-06-05T13:49:52,156   Found link https://files.pythonhosted.org/packages/15/bb/f88884d7710aeb6290c69f180df912ce73beb4975ceea9f58aa28250737c/moleculekit-1.8.5.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.5
2024-06-05T13:49:52,157   Found link https://files.pythonhosted.org/packages/e4/a8/ef9f25e6e42436ceaecfd8bb0aadbf40855976374a46b8cf8d55000fa0a8/moleculekit-1.8.6.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.6
2024-06-05T13:49:52,158   Found link https://files.pythonhosted.org/packages/67/c5/ed682f5ea9a16915b98612e0b274b50303bb912ccb71ab106247e01be8c2/moleculekit-1.8.7.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.7
2024-06-05T13:49:52,159   Found link https://files.pythonhosted.org/packages/23/cd/efd06d75f4a0e866e23156ca3c771c99a22bcfb5f2d1b0f42f853b9cfd27/moleculekit-1.8.10.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.10
2024-06-05T13:49:52,160   Found link https://files.pythonhosted.org/packages/d2/1a/935247798d3097c5093e33b026729b2e218fefd40f58c4b8b8bd3fcf93b4/moleculekit-1.8.13.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.13
2024-06-05T13:49:52,161   Found link https://files.pythonhosted.org/packages/b0/1c/de17759f3cbae5b6b06b60242724a93570b332f657fdeff9e582b6bda391/moleculekit-1.8.14.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.14
2024-06-05T13:49:52,162   Found link https://files.pythonhosted.org/packages/20/a3/7476dceb769dd7bb318d84590a372f1974e978cefb204da16f2b4d99a34e/moleculekit-1.8.15.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.15
2024-06-05T13:49:52,162   Found link https://files.pythonhosted.org/packages/ce/8d/e060616d8e4e03f56d544939f3ccea7f3d665038a66bbf57ba0bcd1f4711/moleculekit-1.8.17.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.17
2024-06-05T13:49:52,163   Found link https://files.pythonhosted.org/packages/36/66/5b4a8da5461b4547e9b3e58f477ddf359701865a7e2ca5b0348fa20f54ae/moleculekit-1.8.18.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.18
2024-06-05T13:49:52,164   Found link https://files.pythonhosted.org/packages/51/33/5a8b10a29ca3c7a893f4a727341611121bc5ec9e2e0004e0c0d4748e33f7/moleculekit-1.8.19.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.19
2024-06-05T13:49:52,165   Found link https://files.pythonhosted.org/packages/0c/02/8cb68afa12c5dac1a7e486d39e9017883f51e17c4fd781898edf79cd2f00/moleculekit-1.8.20.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.20
2024-06-05T13:49:52,166   Found link https://files.pythonhosted.org/packages/65/3f/75e14ea7f71098018974144579774255fc66d1b7f7dae2ff858a87aac1e7/moleculekit-1.8.21.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.21
2024-06-05T13:49:52,167   Found link https://files.pythonhosted.org/packages/2c/2f/d00d1cf86239c509fb4dce470fcaf771e332724034b7db1846332924366a/moleculekit-1.8.22.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.22
2024-06-05T13:49:52,168   Found link https://files.pythonhosted.org/packages/55/ad/3c392a8ef92f6437da30769f6b9770591c79b77604db9aa264d5c0291edf/moleculekit-1.8.23.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.23
2024-06-05T13:49:52,169   Found link https://files.pythonhosted.org/packages/64/72/c2549970c717c236688863287da25f453fbf8b3ea3dee071af9e96be6592/moleculekit-1.8.24.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.24
2024-06-05T13:49:52,170   Found link https://files.pythonhosted.org/packages/f2/d0/2c92a559a74562405f0628bc7880908412790a87c494c9b73e3962c7baa9/moleculekit-1.8.26.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.26
2024-06-05T13:49:52,171   Found link https://files.pythonhosted.org/packages/0e/be/42a9eff89e9e0c3bc08940ead6c991f366ce109bb75ece11cc3b2996d001/moleculekit-1.8.27.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.27
2024-06-05T13:49:52,172   Found link https://files.pythonhosted.org/packages/30/bd/5ed4ddd1b8934c0594027c765bab0013b8081e818e92c2a98462f64d4dcd/moleculekit-1.8.28.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.28
2024-06-05T13:49:52,173   Found link https://files.pythonhosted.org/packages/2a/f9/1d7fe1a09e04049ace7db33faf27c26478ba9674a3cb39d1115fcd1d0679/moleculekit-1.8.29.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.29
2024-06-05T13:49:52,174   Found link https://files.pythonhosted.org/packages/d6/e2/f7f2b1870c62092c3d84ac0055b50305611a1253142cb592babdfcbdb266/moleculekit-1.8.31.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.31
2024-06-05T13:49:52,175   Found link https://files.pythonhosted.org/packages/5a/df/44bc133f3cbda05e621a72b9fef30ecaa96bc88bd5f47136a89b22d82b30/moleculekit-1.8.32.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.32
2024-06-05T13:49:52,176   Found link https://files.pythonhosted.org/packages/2b/34/e2642fe6f54ec67fdba107eb29968217af52f0b6ef1ac69f533164c6584e/moleculekit-1.8.33.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.33
2024-06-05T13:49:52,177 Fetching project page and analyzing links: https://www.piwheels.org/simple/moleculekit/
2024-06-05T13:49:52,178 Getting page https://www.piwheels.org/simple/moleculekit/
2024-06-05T13:49:52,179 Found index url https://www.piwheels.org/simple/
2024-06-05T13:49:52,352 Fetched page https://www.piwheels.org/simple/moleculekit/ as text/html
2024-06-05T13:49:52,442   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.8.32-cp311-cp311-linux_armv6l.whl#sha256=1cb8ae4cdb11708fcd31f1c3de19ec4fb93bbecf44e8170e8464bc236f166efc (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
2024-06-05T13:49:52,443   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.8.32-cp311-cp311-linux_armv7l.whl#sha256=1cb8ae4cdb11708fcd31f1c3de19ec4fb93bbecf44e8170e8464bc236f166efc (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
2024-06-05T13:49:52,443   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.8.32-cp39-cp39-linux_armv6l.whl#sha256=088f285bb9579634e6a88a6ce995af058e2091f60ca38a9a71b19acea17e339b (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
2024-06-05T13:49:52,444   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.8.32-cp39-cp39-linux_armv7l.whl#sha256=088f285bb9579634e6a88a6ce995af058e2091f60ca38a9a71b19acea17e339b (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
2024-06-05T13:49:52,444   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.8.31-cp311-cp311-linux_armv6l.whl#sha256=218f8197ef61b4d204fdf063e6c7161b0c1cada6b9072a80ed32467b83651997 (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
2024-06-05T13:49:52,445   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.8.31-cp311-cp311-linux_armv7l.whl#sha256=218f8197ef61b4d204fdf063e6c7161b0c1cada6b9072a80ed32467b83651997 (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
2024-06-05T13:49:52,446   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.8.31-cp39-cp39-linux_armv6l.whl#sha256=0f5cd707ec1b6d1a5e86c8fb1763866bc13d430d94662be1dfa4d74044bfe743 (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
2024-06-05T13:49:52,447   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.8.31-cp39-cp39-linux_armv7l.whl#sha256=0f5cd707ec1b6d1a5e86c8fb1763866bc13d430d94662be1dfa4d74044bfe743 (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
2024-06-05T13:49:52,447   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.8.29-cp311-cp311-linux_armv6l.whl#sha256=ba84e1392124eb438846b78998fb0f26e8d9942c644dd5574f49d9eb9b0f6a87 (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
2024-06-05T13:49:52,448   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.8.29-cp311-cp311-linux_armv7l.whl#sha256=ba84e1392124eb438846b78998fb0f26e8d9942c644dd5574f49d9eb9b0f6a87 (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
2024-06-05T13:49:52,448   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.8.29-cp39-cp39-linux_armv6l.whl#sha256=44fb6340ac1ed849bf5c52a43b7b0334c3869777bcdec4444fc6ac0303a7d18b (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
2024-06-05T13:49:52,449   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.8.29-cp39-cp39-linux_armv7l.whl#sha256=44fb6340ac1ed849bf5c52a43b7b0334c3869777bcdec4444fc6ac0303a7d18b (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
2024-06-05T13:49:52,450   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.8.28-cp311-cp311-linux_armv6l.whl#sha256=0bd78844c5d2c1631992bbe75050af4b5c6a7c95431e8637867fb30717804582 (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
2024-06-05T13:49:52,450   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.8.28-cp311-cp311-linux_armv7l.whl#sha256=0bd78844c5d2c1631992bbe75050af4b5c6a7c95431e8637867fb30717804582 (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
2024-06-05T13:49:52,451   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.8.28-cp39-cp39-linux_armv6l.whl#sha256=04c1c3834e4447c5f50b16abf23b1e9f68e8e832712398c35671d844fbf2f35e (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
2024-06-05T13:49:52,451   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.8.28-cp39-cp39-linux_armv7l.whl#sha256=04c1c3834e4447c5f50b16abf23b1e9f68e8e832712398c35671d844fbf2f35e (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
2024-06-05T13:49:52,452   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.8.27-cp311-cp311-linux_armv6l.whl#sha256=8a573033f33f4f16ba75cf9a05329b6842b25a3947b5cfd1a5c439e7a837fa1a (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
2024-06-05T13:49:52,452   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.8.27-cp311-cp311-linux_armv7l.whl#sha256=8a573033f33f4f16ba75cf9a05329b6842b25a3947b5cfd1a5c439e7a837fa1a (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
2024-06-05T13:49:52,453   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.8.27-cp39-cp39-linux_armv6l.whl#sha256=0e7b2ee30b7a5ead76d5e0591629b4c746dd586ec0da5b68f13ab66169217a9a (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
2024-06-05T13:49:52,454   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.8.27-cp39-cp39-linux_armv7l.whl#sha256=0e7b2ee30b7a5ead76d5e0591629b4c746dd586ec0da5b68f13ab66169217a9a (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
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2024-06-05T13:49:52,564   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.13-cp39-cp39-linux_armv7l.whl#sha256=413233b9ea619a276a0cc4911cee59417c2be694ab30c5c5c836a31391e5b6c4 (from https://www.piwheels.org/simple/moleculekit/)
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2024-06-05T13:49:52,565   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.12-cp37-cp37m-linux_armv7l.whl#sha256=a871d3b206f986ddc16b14a1e59904384aea1d6936948be45d6d3d05211637c4 (from https://www.piwheels.org/simple/moleculekit/)
2024-06-05T13:49:52,566   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.12-cp39-cp39-linux_armv6l.whl#sha256=d75d99aa397ece4f4d163fff8e78e6868ccbab4190016befc567c5f08d1cbbd4 (from https://www.piwheels.org/simple/moleculekit/)
2024-06-05T13:49:52,566   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.12-cp39-cp39-linux_armv7l.whl#sha256=d75d99aa397ece4f4d163fff8e78e6868ccbab4190016befc567c5f08d1cbbd4 (from https://www.piwheels.org/simple/moleculekit/)
2024-06-05T13:49:52,567   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.9-cp37-cp37m-linux_armv6l.whl#sha256=66dbff1fb6cecaa00851b6b78480b3d8eb3f5f5d9aae539ad9397ec3dc9b22d8 (from https://www.piwheels.org/simple/moleculekit/)
2024-06-05T13:49:52,568   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.9-cp37-cp37m-linux_armv7l.whl#sha256=66dbff1fb6cecaa00851b6b78480b3d8eb3f5f5d9aae539ad9397ec3dc9b22d8 (from https://www.piwheels.org/simple/moleculekit/)
2024-06-05T13:49:52,568   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.9-cp39-cp39-linux_armv6l.whl#sha256=0d0004615c5da8823417816aa8e72f2ac2a2993c01c9ffa07540521dd44cdeb9 (from https://www.piwheels.org/simple/moleculekit/)
2024-06-05T13:49:52,569   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.9-cp39-cp39-linux_armv7l.whl#sha256=0d0004615c5da8823417816aa8e72f2ac2a2993c01c9ffa07540521dd44cdeb9 (from https://www.piwheels.org/simple/moleculekit/)
2024-06-05T13:49:52,569   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.8-cp37-cp37m-linux_armv6l.whl#sha256=e8d8fc1d3f31a50afae4252a2c403fb5b928eff4452d3954322d0d9b2d5383c5 (from https://www.piwheels.org/simple/moleculekit/)
2024-06-05T13:49:52,570   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.8-cp37-cp37m-linux_armv7l.whl#sha256=e8d8fc1d3f31a50afae4252a2c403fb5b928eff4452d3954322d0d9b2d5383c5 (from https://www.piwheels.org/simple/moleculekit/)
2024-06-05T13:49:52,571   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.8-cp39-cp39-linux_armv6l.whl#sha256=72aada7099cf1c7fbed38107b64c08622659cb763f35e5f2b75052a08f5cb853 (from https://www.piwheels.org/simple/moleculekit/)
2024-06-05T13:49:52,571   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.8-cp39-cp39-linux_armv7l.whl#sha256=72aada7099cf1c7fbed38107b64c08622659cb763f35e5f2b75052a08f5cb853 (from https://www.piwheels.org/simple/moleculekit/)
2024-06-05T13:49:52,572   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.7-cp39-cp39-linux_armv6l.whl#sha256=b1bfb9de96ef11fdd768cccd1b894300c470a7389f83c8cca3f42ac636f3dcb7 (from https://www.piwheels.org/simple/moleculekit/)
2024-06-05T13:49:52,572   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.7-cp39-cp39-linux_armv7l.whl#sha256=b1bfb9de96ef11fdd768cccd1b894300c470a7389f83c8cca3f42ac636f3dcb7 (from https://www.piwheels.org/simple/moleculekit/)
2024-06-05T13:49:52,573   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.7-cp37-cp37m-linux_armv6l.whl#sha256=8e98ed7e4f43a05739fbb98f22bc0aeabe5d6a76673b8883a4fa88c3762ba080 (from https://www.piwheels.org/simple/moleculekit/)
2024-06-05T13:49:52,573   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.7-cp37-cp37m-linux_armv7l.whl#sha256=8e98ed7e4f43a05739fbb98f22bc0aeabe5d6a76673b8883a4fa88c3762ba080 (from https://www.piwheels.org/simple/moleculekit/)
2024-06-05T13:49:52,574   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.6-cp37-cp37m-linux_armv6l.whl#sha256=881a09b6497cca181f77a3388648b0ec90974f79d8c81513666ac38dbed69842 (from https://www.piwheels.org/simple/moleculekit/)
2024-06-05T13:49:52,575   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.6-cp37-cp37m-linux_armv7l.whl#sha256=881a09b6497cca181f77a3388648b0ec90974f79d8c81513666ac38dbed69842 (from https://www.piwheels.org/simple/moleculekit/)
2024-06-05T13:49:52,575   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.6-cp39-cp39-linux_armv6l.whl#sha256=de2e9946d86d3e6deb732605b7b9804d3ee229e0d1e869093c26731ff1cf6e49 (from https://www.piwheels.org/simple/moleculekit/)
2024-06-05T13:49:52,576   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.6-cp39-cp39-linux_armv7l.whl#sha256=de2e9946d86d3e6deb732605b7b9804d3ee229e0d1e869093c26731ff1cf6e49 (from https://www.piwheels.org/simple/moleculekit/)
2024-06-05T13:49:52,577   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.5-cp37-cp37m-linux_armv6l.whl#sha256=30013f87dd3dc0c9b99cc9862ac0d0be618fe63faa7c7c4623be9cdd86396624 (from https://www.piwheels.org/simple/moleculekit/)
2024-06-05T13:49:52,577   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.5-cp37-cp37m-linux_armv7l.whl#sha256=30013f87dd3dc0c9b99cc9862ac0d0be618fe63faa7c7c4623be9cdd86396624 (from https://www.piwheels.org/simple/moleculekit/)
2024-06-05T13:49:52,578   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.5-cp39-cp39-linux_armv6l.whl#sha256=f42eb6c315d3242355c8e36090f1f77ed92b768cefb595178e81eb89fa5a79d5 (from https://www.piwheels.org/simple/moleculekit/)
2024-06-05T13:49:52,579   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.5-cp39-cp39-linux_armv7l.whl#sha256=f42eb6c315d3242355c8e36090f1f77ed92b768cefb595178e81eb89fa5a79d5 (from https://www.piwheels.org/simple/moleculekit/)
2024-06-05T13:49:52,579   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.4-cp37-cp37m-linux_armv6l.whl#sha256=a30adf43b2972eb0763ce00b18dc4dffb61a74ac1da2391652cf53f73dba67ce (from https://www.piwheels.org/simple/moleculekit/)
2024-06-05T13:49:52,580   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.4-cp37-cp37m-linux_armv7l.whl#sha256=a30adf43b2972eb0763ce00b18dc4dffb61a74ac1da2391652cf53f73dba67ce (from https://www.piwheels.org/simple/moleculekit/)
2024-06-05T13:49:52,580   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.4-cp39-cp39-linux_armv6l.whl#sha256=e123a257574ee84a677c70d154c26fb75cdf29cfb3f9491b309d8ad47e37f3c0 (from https://www.piwheels.org/simple/moleculekit/)
2024-06-05T13:49:52,581   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.4-cp39-cp39-linux_armv7l.whl#sha256=e123a257574ee84a677c70d154c26fb75cdf29cfb3f9491b309d8ad47e37f3c0 (from https://www.piwheels.org/simple/moleculekit/)
2024-06-05T13:49:52,581   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.3-cp39-cp39-linux_armv6l.whl#sha256=c666ea91f79ecf6c6d99ca251e7f938e7e82208a01a91d39b827ba64eee4ce41 (from https://www.piwheels.org/simple/moleculekit/)
2024-06-05T13:49:52,582   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.3-cp39-cp39-linux_armv7l.whl#sha256=c666ea91f79ecf6c6d99ca251e7f938e7e82208a01a91d39b827ba64eee4ce41 (from https://www.piwheels.org/simple/moleculekit/)
2024-06-05T13:49:52,582   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.3-cp37-cp37m-linux_armv6l.whl#sha256=286faceca4683f35ce8e9aeefefdecee1c02150dfc9b7deb62015ce17f3f557c (from https://www.piwheels.org/simple/moleculekit/)
2024-06-05T13:49:52,583   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.3-cp37-cp37m-linux_armv7l.whl#sha256=286faceca4683f35ce8e9aeefefdecee1c02150dfc9b7deb62015ce17f3f557c (from https://www.piwheels.org/simple/moleculekit/)
2024-06-05T13:49:52,584   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.2-cp37-cp37m-linux_armv6l.whl#sha256=e7e709fde2552ca5cb602bf420ed89d740b1e75bd32c879ee33ffe3b747b109a (from https://www.piwheels.org/simple/moleculekit/)
2024-06-05T13:49:52,584   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.2-cp37-cp37m-linux_armv7l.whl#sha256=e7e709fde2552ca5cb602bf420ed89d740b1e75bd32c879ee33ffe3b747b109a (from https://www.piwheels.org/simple/moleculekit/)
2024-06-05T13:49:52,585   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.2-cp39-cp39-linux_armv6l.whl#sha256=390edc2399f77605c97d9fc8db3b63f282ba297c67fe9514db91ebec945fa2d7 (from https://www.piwheels.org/simple/moleculekit/)
2024-06-05T13:49:52,586   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.2-cp39-cp39-linux_armv7l.whl#sha256=390edc2399f77605c97d9fc8db3b63f282ba297c67fe9514db91ebec945fa2d7 (from https://www.piwheels.org/simple/moleculekit/)
2024-06-05T13:49:52,586   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.1-cp39-cp39-linux_armv6l.whl#sha256=aed227f0c49804421d71b6c949c0d24367a74207b8f855c59e4e73a89b5a93ed (from https://www.piwheels.org/simple/moleculekit/)
2024-06-05T13:49:52,587   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.1-cp39-cp39-linux_armv7l.whl#sha256=aed227f0c49804421d71b6c949c0d24367a74207b8f855c59e4e73a89b5a93ed (from https://www.piwheels.org/simple/moleculekit/)
2024-06-05T13:49:52,587   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.1-cp37-cp37m-linux_armv6l.whl#sha256=ad67f1f622d2a2a49358691e3e784e48277aa09cf1f984ed60e847892a3413d7 (from https://www.piwheels.org/simple/moleculekit/)
2024-06-05T13:49:52,588   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.1-cp37-cp37m-linux_armv7l.whl#sha256=ad67f1f622d2a2a49358691e3e784e48277aa09cf1f984ed60e847892a3413d7 (from https://www.piwheels.org/simple/moleculekit/)
2024-06-05T13:49:52,588   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.0-cp37-cp37m-linux_armv6l.whl#sha256=ab05d1bc06d0d249cbb4871d51e6dca4b9e8474288d86326bd7dd603b9b99820 (from https://www.piwheels.org/simple/moleculekit/)
2024-06-05T13:49:52,589   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.0-cp37-cp37m-linux_armv7l.whl#sha256=ab05d1bc06d0d249cbb4871d51e6dca4b9e8474288d86326bd7dd603b9b99820 (from https://www.piwheels.org/simple/moleculekit/)
2024-06-05T13:49:52,590   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.0-cp39-cp39-linux_armv6l.whl#sha256=7f76858d50e6bb4611f32f053be82003c583d01ad83aa44b6f220dce89a7856f (from https://www.piwheels.org/simple/moleculekit/)
2024-06-05T13:49:52,590   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.0-cp39-cp39-linux_armv7l.whl#sha256=7f76858d50e6bb4611f32f053be82003c583d01ad83aa44b6f220dce89a7856f (from https://www.piwheels.org/simple/moleculekit/)
2024-06-05T13:49:52,591   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.9-cp37-cp37m-linux_armv6l.whl#sha256=34809734c61c1fcc4c4de1857dadfb84e726cbfe0dd0b60fce249166d29a3bb2 (from https://www.piwheels.org/simple/moleculekit/)
2024-06-05T13:49:52,591   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.9-cp37-cp37m-linux_armv7l.whl#sha256=34809734c61c1fcc4c4de1857dadfb84e726cbfe0dd0b60fce249166d29a3bb2 (from https://www.piwheels.org/simple/moleculekit/)
2024-06-05T13:49:52,592   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.9-cp39-cp39-linux_armv6l.whl#sha256=0f20a256b92c66dbaac370cf1a01b885b10f1371beacaec65ec35ce8ac935afb (from https://www.piwheels.org/simple/moleculekit/)
2024-06-05T13:49:52,593   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.9-cp39-cp39-linux_armv7l.whl#sha256=0f20a256b92c66dbaac370cf1a01b885b10f1371beacaec65ec35ce8ac935afb (from https://www.piwheels.org/simple/moleculekit/)
2024-06-05T13:49:52,593   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.6-cp37-cp37m-linux_armv6l.whl#sha256=93f57ab9c01697fb9f28ed39e4c5c32828e862bf410f556fdbc43c7a72825cb2 (from https://www.piwheels.org/simple/moleculekit/)
2024-06-05T13:49:52,594   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.6-cp37-cp37m-linux_armv7l.whl#sha256=93f57ab9c01697fb9f28ed39e4c5c32828e862bf410f556fdbc43c7a72825cb2 (from https://www.piwheels.org/simple/moleculekit/)
2024-06-05T13:49:52,594   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.6-cp39-cp39-linux_armv6l.whl#sha256=a8a1cb7f5b851f5f58273e5d12aa871e5086f6bfd844f33f0b4bf20c83f429ec (from https://www.piwheels.org/simple/moleculekit/)
2024-06-05T13:49:52,595   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.6-cp39-cp39-linux_armv7l.whl#sha256=a8a1cb7f5b851f5f58273e5d12aa871e5086f6bfd844f33f0b4bf20c83f429ec (from https://www.piwheels.org/simple/moleculekit/)
2024-06-05T13:49:52,596   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.5-cp37-cp37m-linux_armv6l.whl#sha256=25d1bdfd25f377e21e8a522d9f3cd2ce3896cf857957c8ec876c69f4de8d53f5 (from https://www.piwheels.org/simple/moleculekit/)
2024-06-05T13:49:52,596   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.5-cp37-cp37m-linux_armv7l.whl#sha256=25d1bdfd25f377e21e8a522d9f3cd2ce3896cf857957c8ec876c69f4de8d53f5 (from https://www.piwheels.org/simple/moleculekit/)
2024-06-05T13:49:52,597   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.5-cp39-cp39-linux_armv6l.whl#sha256=de79a8099ce28793ecc89cf8dfbcb6542a270d00290c96903280f704e2ec22e7 (from https://www.piwheels.org/simple/moleculekit/)
2024-06-05T13:49:52,597   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.5-cp39-cp39-linux_armv7l.whl#sha256=de79a8099ce28793ecc89cf8dfbcb6542a270d00290c96903280f704e2ec22e7 (from https://www.piwheels.org/simple/moleculekit/)
2024-06-05T13:49:52,598   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.3-cp37-cp37m-linux_armv6l.whl#sha256=2d64935710bb05965f486f3bd9f258d8d479dc5c00dc1535ba5e285c8786dcf1 (from https://www.piwheels.org/simple/moleculekit/)
2024-06-05T13:49:52,598   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.3-cp37-cp37m-linux_armv7l.whl#sha256=2d64935710bb05965f486f3bd9f258d8d479dc5c00dc1535ba5e285c8786dcf1 (from https://www.piwheels.org/simple/moleculekit/)
2024-06-05T13:49:52,599   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.3-cp39-cp39-linux_armv6l.whl#sha256=c1983524eecc8638287c4a1e09dda961635e861bf6f9342dc566a9f9a4c0b771 (from https://www.piwheels.org/simple/moleculekit/)
2024-06-05T13:49:52,600   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.3-cp39-cp39-linux_armv7l.whl#sha256=c1983524eecc8638287c4a1e09dda961635e861bf6f9342dc566a9f9a4c0b771 (from https://www.piwheels.org/simple/moleculekit/)
2024-06-05T13:49:52,600   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.2-cp39-cp39-linux_armv6l.whl#sha256=24cfa04ff95ecb68f6d261ba4176e979846a0424ba781a1e314ca233c5206ae7 (from https://www.piwheels.org/simple/moleculekit/)
2024-06-05T13:49:52,601   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.2-cp39-cp39-linux_armv7l.whl#sha256=24cfa04ff95ecb68f6d261ba4176e979846a0424ba781a1e314ca233c5206ae7 (from https://www.piwheels.org/simple/moleculekit/)
2024-06-05T13:49:52,601   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.2-cp37-cp37m-linux_armv6l.whl#sha256=3fa03496ffbd230b85c032f9e1ba3129efbd4c37f6509c6cfef258ce69ed6925 (from https://www.piwheels.org/simple/moleculekit/)
2024-06-05T13:49:52,602   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.2-cp37-cp37m-linux_armv7l.whl#sha256=3fa03496ffbd230b85c032f9e1ba3129efbd4c37f6509c6cfef258ce69ed6925 (from https://www.piwheels.org/simple/moleculekit/)
2024-06-05T13:49:52,603   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.1-cp37-cp37m-linux_armv6l.whl#sha256=584155aa2ddfa324fcd872934f8b25a296c40b34797209bb754f4a641a5b27eb (from https://www.piwheels.org/simple/moleculekit/)
2024-06-05T13:49:52,604   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.1-cp37-cp37m-linux_armv7l.whl#sha256=584155aa2ddfa324fcd872934f8b25a296c40b34797209bb754f4a641a5b27eb (from https://www.piwheels.org/simple/moleculekit/)
2024-06-05T13:49:52,604   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.1-cp39-cp39-linux_armv6l.whl#sha256=41b03e81b9cd75c716643741a53b8d4d5aeb1633b5e07091c1a7355b6b44d233 (from https://www.piwheels.org/simple/moleculekit/)
2024-06-05T13:49:52,604   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.1-cp39-cp39-linux_armv7l.whl#sha256=41b03e81b9cd75c716643741a53b8d4d5aeb1633b5e07091c1a7355b6b44d233 (from https://www.piwheels.org/simple/moleculekit/)
2024-06-05T13:49:52,605   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.0-cp37-cp37m-linux_armv6l.whl#sha256=b0ac5fea57fee9d962de25688ffde053c705daa15588886ea6aa7d5ab0986077 (from https://www.piwheels.org/simple/moleculekit/)
2024-06-05T13:49:52,605   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.0-cp37-cp37m-linux_armv7l.whl#sha256=b0ac5fea57fee9d962de25688ffde053c705daa15588886ea6aa7d5ab0986077 (from https://www.piwheels.org/simple/moleculekit/)
2024-06-05T13:49:52,606   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.0-cp39-cp39-linux_armv6l.whl#sha256=1b6361e98ea6ec0f3a7a4cce9ec9569a117c26deb95d0ce2bcea9d6f1f38d503 (from https://www.piwheels.org/simple/moleculekit/)
2024-06-05T13:49:52,606   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.0-cp39-cp39-linux_armv7l.whl#sha256=1b6361e98ea6ec0f3a7a4cce9ec9569a117c26deb95d0ce2bcea9d6f1f38d503 (from https://www.piwheels.org/simple/moleculekit/)
2024-06-05T13:49:52,607   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.9-cp37-cp37m-linux_armv6l.whl#sha256=a6ee5c9ac5b2648bb87ca08a6491d955004770b58180224d6d24bdb8cec17458 (from https://www.piwheels.org/simple/moleculekit/)
2024-06-05T13:49:52,608   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.9-cp37-cp37m-linux_armv7l.whl#sha256=a6ee5c9ac5b2648bb87ca08a6491d955004770b58180224d6d24bdb8cec17458 (from https://www.piwheels.org/simple/moleculekit/)
2024-06-05T13:49:52,608   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.9-cp39-cp39-linux_armv6l.whl#sha256=223cbac9f53d732be3d157f8e68c124c79439d057ec079594c681d7c5327f342 (from https://www.piwheels.org/simple/moleculekit/)
2024-06-05T13:49:52,609   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.9-cp39-cp39-linux_armv7l.whl#sha256=223cbac9f53d732be3d157f8e68c124c79439d057ec079594c681d7c5327f342 (from https://www.piwheels.org/simple/moleculekit/)
2024-06-05T13:49:52,609   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.8-cp37-cp37m-linux_armv6l.whl#sha256=19e3b710f4af1a0cb530060979c4216d87f0bd8a71e9f41824cf3565abbcbbdb (from https://www.piwheels.org/simple/moleculekit/)
2024-06-05T13:49:52,610   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.8-cp37-cp37m-linux_armv7l.whl#sha256=19e3b710f4af1a0cb530060979c4216d87f0bd8a71e9f41824cf3565abbcbbdb (from https://www.piwheels.org/simple/moleculekit/)
2024-06-05T13:49:52,611   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.8-cp39-cp39-linux_armv6l.whl#sha256=c18e44dbd9cf047134d440ff4fbb18722a3fdb0f348d431e8b7bed7dd398bd6e (from https://www.piwheels.org/simple/moleculekit/)
2024-06-05T13:49:52,611   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.8-cp39-cp39-linux_armv7l.whl#sha256=c18e44dbd9cf047134d440ff4fbb18722a3fdb0f348d431e8b7bed7dd398bd6e (from https://www.piwheels.org/simple/moleculekit/)
2024-06-05T13:49:52,612   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.7-cp37-cp37m-linux_armv6l.whl#sha256=8e63b6afb6715f46aae20e77b81958cdc652a7b1b6d294c5d559f7f06d5a5106 (from https://www.piwheels.org/simple/moleculekit/)
2024-06-05T13:49:52,612   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.7-cp37-cp37m-linux_armv7l.whl#sha256=8e63b6afb6715f46aae20e77b81958cdc652a7b1b6d294c5d559f7f06d5a5106 (from https://www.piwheels.org/simple/moleculekit/)
2024-06-05T13:49:52,613   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.7-cp39-cp39-linux_armv6l.whl#sha256=53a48e2a1781a9ae00e1f905778bad58715b08cff2ed4605148de1e481c9d50e (from https://www.piwheels.org/simple/moleculekit/)
2024-06-05T13:49:52,613   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.7-cp39-cp39-linux_armv7l.whl#sha256=53a48e2a1781a9ae00e1f905778bad58715b08cff2ed4605148de1e481c9d50e (from https://www.piwheels.org/simple/moleculekit/)
2024-06-05T13:49:52,614   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.6-cp37-cp37m-linux_armv6l.whl#sha256=a85d0cfa7da9e3593e97f1c63822eb0a9733744fdeb19c3bbd09e1f4242e1d91 (from https://www.piwheels.org/simple/moleculekit/)
2024-06-05T13:49:52,614   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.6-cp37-cp37m-linux_armv7l.whl#sha256=a85d0cfa7da9e3593e97f1c63822eb0a9733744fdeb19c3bbd09e1f4242e1d91 (from https://www.piwheels.org/simple/moleculekit/)
2024-06-05T13:49:52,615   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.6-cp39-cp39-linux_armv6l.whl#sha256=d5e470ed8514697a92a69cccdc99ddf6da22ddde2cc24b3e6ed949645778116f (from https://www.piwheels.org/simple/moleculekit/)
2024-06-05T13:49:52,616   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.6-cp39-cp39-linux_armv7l.whl#sha256=d5e470ed8514697a92a69cccdc99ddf6da22ddde2cc24b3e6ed949645778116f (from https://www.piwheels.org/simple/moleculekit/)
2024-06-05T13:49:52,616   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.5-cp311-cp311-linux_armv6l.whl#sha256=901c091adc4fc8b89c9de8f139d92aeffbfb6dc91799f2f9019f61646044ddd7 (from https://www.piwheels.org/simple/moleculekit/)
2024-06-05T13:49:52,617   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.5-cp311-cp311-linux_armv7l.whl#sha256=901c091adc4fc8b89c9de8f139d92aeffbfb6dc91799f2f9019f61646044ddd7 (from https://www.piwheels.org/simple/moleculekit/)
2024-06-05T13:49:52,617   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.5-cp37-cp37m-linux_armv6l.whl#sha256=2670c23b960766e0d52c54881bf4a8a663345f17190e380f84a273d51c8cdb3f (from https://www.piwheels.org/simple/moleculekit/)
2024-06-05T13:49:52,618   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.5-cp37-cp37m-linux_armv7l.whl#sha256=2670c23b960766e0d52c54881bf4a8a663345f17190e380f84a273d51c8cdb3f (from https://www.piwheels.org/simple/moleculekit/)
2024-06-05T13:49:52,619   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.5-cp39-cp39-linux_armv6l.whl#sha256=55bb6252b29c31ce9b46ca6dc68ed50a4fbe0e44a1b3f8f6f57b13faf1c939c1 (from https://www.piwheels.org/simple/moleculekit/)
2024-06-05T13:49:52,619   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.5-cp39-cp39-linux_armv7l.whl#sha256=55bb6252b29c31ce9b46ca6dc68ed50a4fbe0e44a1b3f8f6f57b13faf1c939c1 (from https://www.piwheels.org/simple/moleculekit/)
2024-06-05T13:49:52,620   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.4-cp37-cp37m-linux_armv6l.whl#sha256=c59aab79b14443a5c4194c3a08c69a2f1a98abedfda3217c0b15e5f694cb8dc3 (from https://www.piwheels.org/simple/moleculekit/)
2024-06-05T13:49:52,620   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.4-cp37-cp37m-linux_armv7l.whl#sha256=c59aab79b14443a5c4194c3a08c69a2f1a98abedfda3217c0b15e5f694cb8dc3 (from https://www.piwheels.org/simple/moleculekit/)
2024-06-05T13:49:52,621   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.4-cp39-cp39-linux_armv6l.whl#sha256=8c575ac103cbab0a21e8ac9ee5d64f45634da6dcfa639e87f54e4afd333fe22f (from https://www.piwheels.org/simple/moleculekit/)
2024-06-05T13:49:52,621   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.4-cp39-cp39-linux_armv7l.whl#sha256=8c575ac103cbab0a21e8ac9ee5d64f45634da6dcfa639e87f54e4afd333fe22f (from https://www.piwheels.org/simple/moleculekit/)
2024-06-05T13:49:52,622   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.6.7-cp37-cp37m-linux_armv6l.whl#sha256=e6497cd1fa524aee3c9d431fc1556e29e1ff896a6c49eca8572fb6ffc399cd6c (from https://www.piwheels.org/simple/moleculekit/)
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2024-06-05T13:49:52,642   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.1.22-py3-none-any.whl#sha256=4bdcc64f301cdd7a24c6f2b0d515152bbde40124568d72b2046003aba6d7d34c (from https://www.piwheels.org/simple/moleculekit/)
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2024-06-05T13:49:52,649   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.1.5-py3-none-any.whl#sha256=2f111e31b3f90e63ca0154c528585208b8bd41a065aa0078325683f4b36eacec (from https://www.piwheels.org/simple/moleculekit/)
2024-06-05T13:49:52,650   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.1.4-py3-none-any.whl#sha256=5784491ff294e145a00311f8239aaa0b92c12605db0508ee3e10469b80d4cadd (from https://www.piwheels.org/simple/moleculekit/)
2024-06-05T13:49:52,650 Skipping link: not a file: https://www.piwheels.org/simple/moleculekit/
2024-06-05T13:49:52,651 Skipping link: not a file: https://pypi.org/simple/moleculekit/
2024-06-05T13:49:52,693 Given no hashes to check 1 links for project 'moleculekit': discarding no candidates
2024-06-05T13:49:52,714 Collecting moleculekit==1.8.33
2024-06-05T13:49:52,716   Created temporary directory: /tmp/pip-unpack-ecd9nsyi
2024-06-05T13:49:52,951   Downloading moleculekit-1.8.33.tar.gz (6.8 MB)
2024-06-05T13:49:55,707   Added moleculekit==1.8.33 from https://files.pythonhosted.org/packages/2b/34/e2642fe6f54ec67fdba107eb29968217af52f0b6ef1ac69f533164c6584e/moleculekit-1.8.33.tar.gz to build tracker '/tmp/pip-build-tracker-d0e702au'
2024-06-05T13:49:55,716   Created temporary directory: /tmp/pip-build-env-cpcib7j5
2024-06-05T13:49:55,720   Installing build dependencies: started
2024-06-05T13:49:55,721   Running command pip subprocess to install build dependencies
2024-06-05T13:49:56,853   Using pip 24.0 from /home/piwheels/.local/lib/python3.11/site-packages/pip (python 3.11)
2024-06-05T13:49:57,364   Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2024-06-05T13:49:58,885   Collecting setuptools
2024-06-05T13:49:58,900     Using cached https://www.piwheels.org/simple/setuptools/setuptools-70.0.0-py3-none-any.whl (863 kB)
2024-06-05T13:49:59,563     Link requires a different Python (3.11.2 not in: '>=3.7,<3.11'): https://files.pythonhosted.org/packages/3a/be/650f9c091ef71cb01d735775d554e068752d3ff63d7943b26316dc401749/numpy-1.21.2.zip (from https://pypi.org/simple/numpy/) (requires-python:>=3.7,<3.11)
2024-06-05T13:49:59,567     Link requires a different Python (3.11.2 not in: '>=3.7,<3.11'): https://files.pythonhosted.org/packages/5f/d6/ad58ded26556eaeaa8c971e08b6466f17c4ac4d786cd3d800e26ce59cc01/numpy-1.21.3.zip (from https://pypi.org/simple/numpy/) (requires-python:>=3.7,<3.11)
2024-06-05T13:49:59,570     Link requires a different Python (3.11.2 not in: '>=3.7,<3.11'): https://files.pythonhosted.org/packages/fb/48/b0708ebd7718a8933f0d3937513ef8ef2f4f04529f1f66ca86d873043921/numpy-1.21.4.zip (from https://pypi.org/simple/numpy/) (requires-python:>=3.7,<3.11)
2024-06-05T13:49:59,573     Link requires a different Python (3.11.2 not in: '>=3.7,<3.11'): https://files.pythonhosted.org/packages/c2/a8/a924a09492bdfee8c2ec3094d0a13f2799800b4fdc9c890738aeeb12c72e/numpy-1.21.5.zip (from https://pypi.org/simple/numpy/) (requires-python:>=3.7,<3.11)
2024-06-05T13:49:59,576     Link requires a different Python (3.11.2 not in: '>=3.7,<3.11'): https://files.pythonhosted.org/packages/45/b7/de7b8e67f2232c26af57c205aaad29fe17754f793404f59c8a730c7a191a/numpy-1.21.6.zip (from https://pypi.org/simple/numpy/) (requires-python:>=3.7,<3.11)
2024-06-05T13:49:59,866   Collecting numpy>=1.18.5
2024-06-05T13:49:59,881     Using cached https://www.piwheels.org/simple/numpy/numpy-1.26.4-cp311-cp311-linux_armv7l.whl (5.6 MB)
2024-06-05T13:50:01,355   Collecting Cython>=0.29.21
2024-06-05T13:50:01,369     Using cached https://www.piwheels.org/simple/cython/Cython-3.0.10-cp311-cp311-linux_armv7l.whl (11.8 MB)
2024-06-05T13:50:01,771   Collecting toml
2024-06-05T13:50:01,790     Using cached https://www.piwheels.org/simple/toml/toml-0.10.2-py2.py3-none-any.whl (16 kB)
2024-06-05T13:50:01,979   Collecting versioneer==0.28 (from versioneer[toml]==0.28)
2024-06-05T13:50:01,996     Using cached https://www.piwheels.org/simple/versioneer/versioneer-0.28-py3-none-any.whl (45 kB)
2024-06-05T13:50:04,726   Installing collected packages: versioneer, toml, setuptools, numpy, Cython
2024-06-05T13:50:04,756     Creating /tmp/pip-build-env-cpcib7j5/overlay/local/bin
2024-06-05T13:50:04,758     changing mode of /tmp/pip-build-env-cpcib7j5/overlay/local/bin/versioneer to 755
2024-06-05T13:50:15,374     changing mode of /tmp/pip-build-env-cpcib7j5/overlay/local/bin/f2py to 755
2024-06-05T13:50:19,029     changing mode of /tmp/pip-build-env-cpcib7j5/overlay/local/bin/cygdb to 755
2024-06-05T13:50:19,031     changing mode of /tmp/pip-build-env-cpcib7j5/overlay/local/bin/cython to 755
2024-06-05T13:50:19,033     changing mode of /tmp/pip-build-env-cpcib7j5/overlay/local/bin/cythonize to 755
2024-06-05T13:50:19,077   Successfully installed Cython-3.0.10 numpy-1.26.4 setuptools-70.0.0 toml-0.10.2 versioneer-0.28
2024-06-05T13:50:19,743   Installing build dependencies: finished with status 'done'
2024-06-05T13:50:19,746   Getting requirements to build wheel: started
2024-06-05T13:50:19,747   Running command Getting requirements to build wheel
2024-06-05T13:50:55,253   warning: moleculekit/wrapping/wrapping.pyx:47:4: Unreachable code
2024-06-05T13:51:03,606   Compiling moleculekit/interactions/hbonds/hbonds.pyx because it depends on /tmp/pip-build-env-cpcib7j5/overlay/local/lib/python3.11/dist-packages/Cython/Includes/libcpp/vector.pxd.
2024-06-05T13:51:03,607   Compiling moleculekit/interactions/pipi/pipi.pyx because it depends on /tmp/pip-build-env-cpcib7j5/overlay/local/lib/python3.11/dist-packages/Cython/Includes/libcpp/vector.pxd.
2024-06-05T13:51:03,608   Compiling moleculekit/interactions/cationpi/cationpi.pyx because it depends on /tmp/pip-build-env-cpcib7j5/overlay/local/lib/python3.11/dist-packages/Cython/Includes/libcpp/vector.pxd.
2024-06-05T13:51:03,609   Compiling moleculekit/interactions/sigmahole/sigmahole.pyx because it depends on /tmp/pip-build-env-cpcib7j5/overlay/local/lib/python3.11/dist-packages/Cython/Includes/libcpp/vector.pxd.
2024-06-05T13:51:03,609   Compiling moleculekit/wrapping/wrapping.pyx because it depends on /tmp/pip-build-env-cpcib7j5/overlay/local/lib/python3.11/dist-packages/Cython/Includes/libcpp/vector.pxd.
2024-06-05T13:51:03,610   Compiling moleculekit/bondguesser_utils/bondguesser_utils.pyx because it depends on /tmp/pip-build-env-cpcib7j5/overlay/local/lib/python3.11/dist-packages/Cython/Includes/libcpp/vector.pxd.
2024-06-05T13:51:03,610   Compiling moleculekit/atomselect_utils/atomselect_utils.pyx because it depends on /tmp/pip-build-env-cpcib7j5/overlay/local/lib/python3.11/dist-packages/Cython/Includes/libcpp/vector.pxd.
2024-06-05T13:51:03,611   Compiling moleculekit/distance_utils/distance_utils.pyx because it depends on /tmp/pip-build-env-cpcib7j5/overlay/local/lib/python3.11/dist-packages/Cython/Includes/libcpp/vector.pxd.
2024-06-05T13:51:03,612   Compiling moleculekit/occupancy_utils/occupancy_utils.pyx because it depends on /tmp/pip-build-env-cpcib7j5/overlay/local/lib/python3.11/dist-packages/Cython/Includes/libcpp/vector.pxd.
2024-06-05T13:51:03,612   Compiling moleculekit/cython_utils/cython_utils.pyx because it depends on /tmp/pip-build-env-cpcib7j5/overlay/local/lib/python3.11/dist-packages/Cython/Includes/libcpp/vector.pxd.
2024-06-05T13:51:03,613   Compiling moleculekit/fileformats/xtc/xtc.pyx because it depends on /tmp/pip-build-env-cpcib7j5/overlay/local/lib/python3.11/dist-packages/Cython/Includes/libc/string.pxd.
2024-06-05T13:51:03,613   Compiling moleculekit/fileformats/xtc/trr.pyx because it depends on /tmp/pip-build-env-cpcib7j5/overlay/local/lib/python3.11/dist-packages/Cython/Includes/libc/string.pxd.
2024-06-05T13:51:03,614   Compiling moleculekit/fileformats/dcd/dcd.pyx because it depends on /tmp/pip-build-env-cpcib7j5/overlay/local/lib/python3.11/dist-packages/Cython/Includes/libc/string.pxd.
2024-06-05T13:51:03,614   Compiling moleculekit/fileformats/binpos/binpos.pyx because it depends on /tmp/pip-build-env-cpcib7j5/overlay/local/lib/python3.11/dist-packages/Cython/Includes/libc/string.pxd.
2024-06-05T13:51:03,615   Compiling moleculekit/tmalign/tmalign_util.pyx because it depends on /tmp/pip-build-env-cpcib7j5/overlay/local/lib/python3.11/dist-packages/Cython/Includes/libcpp/vector.pxd.
2024-06-05T13:51:03,615   [ 1/15] Cythonizing moleculekit/atomselect_utils/atomselect_utils.pyx
2024-06-05T13:51:03,616   [ 2/15] Cythonizing moleculekit/bondguesser_utils/bondguesser_utils.pyx
2024-06-05T13:51:03,616   [ 3/15] Cythonizing moleculekit/cython_utils/cython_utils.pyx
2024-06-05T13:51:03,617   [ 4/15] Cythonizing moleculekit/distance_utils/distance_utils.pyx
2024-06-05T13:51:03,617   [ 5/15] Cythonizing moleculekit/fileformats/dcd/dcd.pyx
2024-06-05T13:51:03,618   [ 6/15] Cythonizing moleculekit/interactions/cationpi/cationpi.pyx
2024-06-05T13:51:03,619   [ 7/15] Cythonizing moleculekit/interactions/hbonds/hbonds.pyx
2024-06-05T13:51:03,619   [ 8/15] Cythonizing moleculekit/interactions/pipi/pipi.pyx
2024-06-05T13:51:03,620   [ 9/15] Cythonizing moleculekit/interactions/sigmahole/sigmahole.pyx
2024-06-05T13:51:03,621   [10/15] Cythonizing moleculekit/occupancy_utils/occupancy_utils.pyx
2024-06-05T13:51:03,622   [11/15] Cythonizing moleculekit/tmalign/tmalign_util.pyx
2024-06-05T13:51:03,622   [12/15] Cythonizing moleculekit/wrapping/wrapping.pyx
2024-06-05T13:51:03,623   [13/15] Cythonizing moleculekit/fileformats/binpos/binpos.pyx
2024-06-05T13:51:03,623   [14/15] Cythonizing moleculekit/fileformats/xtc/trr.pyx
2024-06-05T13:51:03,624   [15/15] Cythonizing moleculekit/fileformats/xtc/xtc.pyx
2024-06-05T13:51:03,892   running egg_info
2024-06-05T13:51:03,898   writing moleculekit.egg-info/PKG-INFO
2024-06-05T13:51:03,902   writing dependency_links to moleculekit.egg-info/dependency_links.txt
2024-06-05T13:51:03,904   writing requirements to moleculekit.egg-info/requires.txt
2024-06-05T13:51:03,906   writing top-level names to moleculekit.egg-info/top_level.txt
2024-06-05T13:51:03,939   dependency /tmp/pip-build-env-cpcib7j5/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-06-05T13:51:03,939   dependency /tmp/pip-build-env-cpcib7j5/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-06-05T13:51:03,940   dependency /tmp/pip-build-env-cpcib7j5/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-06-05T13:51:03,941   dependency /tmp/pip-build-env-cpcib7j5/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-06-05T13:51:03,941   dependency /tmp/pip-build-env-cpcib7j5/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-06-05T13:51:03,942   dependency /tmp/pip-build-env-cpcib7j5/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-06-05T13:51:03,942   dependency /tmp/pip-build-env-cpcib7j5/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-06-05T13:51:03,943   dependency /tmp/pip-build-env-cpcib7j5/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-06-05T13:51:03,944   dependency /tmp/pip-build-env-cpcib7j5/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-06-05T13:51:03,944   dependency /tmp/pip-build-env-cpcib7j5/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-06-05T13:51:03,945   dependency /tmp/pip-build-env-cpcib7j5/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-06-05T13:51:03,946   dependency /tmp/pip-build-env-cpcib7j5/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-06-05T13:51:03,946   dependency /tmp/pip-build-env-cpcib7j5/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-06-05T13:51:03,947   dependency /tmp/pip-build-env-cpcib7j5/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-06-05T13:51:03,947   dependency /tmp/pip-build-env-cpcib7j5/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-06-05T13:51:03,948   dependency /tmp/pip-build-env-cpcib7j5/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-06-05T13:51:03,949   dependency /tmp/pip-build-env-cpcib7j5/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-06-05T13:51:03,949   dependency /tmp/pip-build-env-cpcib7j5/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-06-05T13:51:03,950   dependency /tmp/pip-build-env-cpcib7j5/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-06-05T13:51:03,950   dependency /tmp/pip-build-env-cpcib7j5/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-06-05T13:51:03,951   dependency /tmp/pip-build-env-cpcib7j5/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-06-05T13:51:03,951   dependency /tmp/pip-build-env-cpcib7j5/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-06-05T13:51:03,951   dependency /tmp/pip-build-env-cpcib7j5/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-06-05T13:51:03,952   dependency /tmp/pip-build-env-cpcib7j5/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-06-05T13:51:03,953   dependency /tmp/pip-build-env-cpcib7j5/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-06-05T13:51:03,953   dependency /tmp/pip-build-env-cpcib7j5/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-06-05T13:51:03,954   dependency /tmp/pip-build-env-cpcib7j5/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-06-05T13:51:03,954   dependency /tmp/pip-build-env-cpcib7j5/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-06-05T13:51:03,955   dependency /tmp/pip-build-env-cpcib7j5/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-06-05T13:51:03,956   dependency /tmp/pip-build-env-cpcib7j5/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-06-05T13:51:03,956   dependency /tmp/pip-build-env-cpcib7j5/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-06-05T13:51:03,957   dependency /tmp/pip-build-env-cpcib7j5/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-06-05T13:51:03,957   dependency /tmp/pip-build-env-cpcib7j5/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-06-05T13:51:03,958   dependency /tmp/pip-build-env-cpcib7j5/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-06-05T13:51:03,959   dependency /tmp/pip-build-env-cpcib7j5/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-06-05T13:51:03,959   dependency /tmp/pip-build-env-cpcib7j5/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-06-05T13:51:03,960   dependency /tmp/pip-build-env-cpcib7j5/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-06-05T13:51:03,960   dependency /tmp/pip-build-env-cpcib7j5/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-06-05T13:51:03,961   dependency /tmp/pip-build-env-cpcib7j5/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-06-05T13:51:03,961   dependency /tmp/pip-build-env-cpcib7j5/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-06-05T13:51:03,961   dependency /tmp/pip-build-env-cpcib7j5/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-06-05T13:51:03,962   dependency /tmp/pip-build-env-cpcib7j5/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-06-05T13:51:03,962   dependency /tmp/pip-build-env-cpcib7j5/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-06-05T13:51:03,963   dependency /tmp/pip-build-env-cpcib7j5/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-06-05T13:51:03,964   dependency /tmp/pip-build-env-cpcib7j5/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-06-05T13:51:03,964   dependency /tmp/pip-build-env-cpcib7j5/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-06-05T13:51:03,965   dependency /tmp/pip-build-env-cpcib7j5/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-06-05T13:51:03,965   dependency /tmp/pip-build-env-cpcib7j5/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
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2024-06-05T13:51:03,966   dependency /tmp/pip-build-env-cpcib7j5/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-06-05T13:51:03,967   dependency /tmp/pip-build-env-cpcib7j5/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-06-05T13:51:03,967   dependency /tmp/pip-build-env-cpcib7j5/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-06-05T13:51:03,968   dependency /tmp/pip-build-env-cpcib7j5/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-06-05T13:51:03,969   dependency /tmp/pip-build-env-cpcib7j5/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-06-05T13:51:03,969   dependency /tmp/pip-build-env-cpcib7j5/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
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2024-06-05T13:51:03,970   dependency /tmp/pip-build-env-cpcib7j5/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
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2024-06-05T13:51:03,973   dependency /tmp/pip-build-env-cpcib7j5/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
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2024-06-05T13:51:03,975   dependency /tmp/pip-build-env-cpcib7j5/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-06-05T13:51:03,976   dependency /tmp/pip-build-env-cpcib7j5/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-06-05T13:51:03,976   dependency /tmp/pip-build-env-cpcib7j5/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-06-05T13:51:03,977   dependency /tmp/pip-build-env-cpcib7j5/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-06-05T13:51:03,978   dependency /tmp/pip-build-env-cpcib7j5/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-06-05T13:51:03,979   dependency /tmp/pip-build-env-cpcib7j5/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-06-05T13:51:03,979   dependency /tmp/pip-build-env-cpcib7j5/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-06-05T13:51:03,980   dependency /tmp/pip-build-env-cpcib7j5/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-06-05T13:51:03,980   dependency /tmp/pip-build-env-cpcib7j5/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-06-05T13:51:03,989   reading manifest file 'moleculekit.egg-info/SOURCES.txt'
2024-06-05T13:51:04,023   reading manifest template 'MANIFEST.in'
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2024-06-05T13:51:04,271   adding license file 'LICENSE'
2024-06-05T13:51:04,287   writing manifest file 'moleculekit.egg-info/SOURCES.txt'
2024-06-05T13:51:05,959   Getting requirements to build wheel: finished with status 'done'
2024-06-05T13:51:05,972   Installing backend dependencies: started
2024-06-05T13:51:05,973   Running command pip subprocess to install backend dependencies
2024-06-05T13:51:07,206   Using pip 24.0 from /home/piwheels/.local/lib/python3.11/site-packages/pip (python 3.11)
2024-06-05T13:51:07,761   Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2024-06-05T13:51:08,298   Collecting wheel
2024-06-05T13:51:08,313     Using cached https://www.piwheels.org/simple/wheel/wheel-0.43.0-py3-none-any.whl (65 kB)
2024-06-05T13:51:10,710   Installing collected packages: wheel
2024-06-05T13:51:10,939     Creating /tmp/pip-build-env-cpcib7j5/normal/local/bin
2024-06-05T13:51:10,941     changing mode of /tmp/pip-build-env-cpcib7j5/normal/local/bin/wheel to 755
2024-06-05T13:51:10,953   Successfully installed wheel-0.43.0
2024-06-05T13:51:11,396   Installing backend dependencies: finished with status 'done'
2024-06-05T13:51:11,398   Created temporary directory: /tmp/pip-modern-metadata-ufe3sqzp
2024-06-05T13:51:11,400   Preparing metadata (pyproject.toml): started
2024-06-05T13:51:11,402   Running command Preparing metadata (pyproject.toml)
2024-06-05T13:51:13,820   running dist_info
2024-06-05T13:51:13,822   creating /tmp/pip-modern-metadata-ufe3sqzp/moleculekit.egg-info
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2024-06-05T13:51:13,882   dependency /tmp/pip-build-env-cpcib7j5/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
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2024-06-05T13:51:13,885   dependency /tmp/pip-build-env-cpcib7j5/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-06-05T13:51:13,885   dependency /tmp/pip-build-env-cpcib7j5/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
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2024-06-05T13:51:13,887   dependency /tmp/pip-build-env-cpcib7j5/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-06-05T13:51:13,888   dependency /tmp/pip-build-env-cpcib7j5/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-06-05T13:51:13,888   dependency /tmp/pip-build-env-cpcib7j5/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-06-05T13:51:13,889   dependency /tmp/pip-build-env-cpcib7j5/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-06-05T13:51:13,889   dependency /tmp/pip-build-env-cpcib7j5/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-06-05T13:51:13,890   dependency /tmp/pip-build-env-cpcib7j5/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-06-05T13:51:13,890   dependency /tmp/pip-build-env-cpcib7j5/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-06-05T13:51:13,891   dependency /tmp/pip-build-env-cpcib7j5/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
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2024-06-05T13:51:13,896   dependency /tmp/pip-build-env-cpcib7j5/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
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2024-06-05T13:51:13,899   dependency /tmp/pip-build-env-cpcib7j5/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-06-05T13:51:13,899   dependency /tmp/pip-build-env-cpcib7j5/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-06-05T13:51:13,900   dependency /tmp/pip-build-env-cpcib7j5/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-06-05T13:51:13,900   dependency /tmp/pip-build-env-cpcib7j5/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-06-05T13:51:13,901   dependency /tmp/pip-build-env-cpcib7j5/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-06-05T13:51:13,902   dependency /tmp/pip-build-env-cpcib7j5/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-06-05T13:51:13,902   dependency /tmp/pip-build-env-cpcib7j5/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-06-05T13:51:13,903   dependency /tmp/pip-build-env-cpcib7j5/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-06-05T13:51:13,903   dependency /tmp/pip-build-env-cpcib7j5/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-06-05T13:51:13,904   dependency /tmp/pip-build-env-cpcib7j5/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-06-05T13:51:13,904   dependency /tmp/pip-build-env-cpcib7j5/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-06-05T13:51:13,905   dependency /tmp/pip-build-env-cpcib7j5/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-06-05T13:51:13,911   reading manifest file '/tmp/pip-modern-metadata-ufe3sqzp/moleculekit.egg-info/SOURCES.txt'
2024-06-05T13:51:13,913   reading manifest template 'MANIFEST.in'
2024-06-05T13:51:14,168   no previously-included directories found matching 'moleculekit/test-data'
2024-06-05T13:51:14,169   no previously-included directories found matching 'moleculekit/tests'
2024-06-05T13:51:14,170   no previously-included directories found matching 'package'
2024-06-05T13:51:14,171   adding license file 'LICENSE'
2024-06-05T13:51:14,183   writing manifest file '/tmp/pip-modern-metadata-ufe3sqzp/moleculekit.egg-info/SOURCES.txt'
2024-06-05T13:51:14,191   creating '/tmp/pip-modern-metadata-ufe3sqzp/moleculekit-1.8.33.dist-info'
2024-06-05T13:51:14,426   Preparing metadata (pyproject.toml): finished with status 'done'
2024-06-05T13:51:14,431   Source in /tmp/pip-wheel-_se2_ibc/moleculekit_0bff60b7c9794a6681f9a279ed9ab3ae has version 1.8.33, which satisfies requirement moleculekit==1.8.33 from https://files.pythonhosted.org/packages/2b/34/e2642fe6f54ec67fdba107eb29968217af52f0b6ef1ac69f533164c6584e/moleculekit-1.8.33.tar.gz
2024-06-05T13:51:14,432   Removed moleculekit==1.8.33 from https://files.pythonhosted.org/packages/2b/34/e2642fe6f54ec67fdba107eb29968217af52f0b6ef1ac69f533164c6584e/moleculekit-1.8.33.tar.gz from build tracker '/tmp/pip-build-tracker-d0e702au'
2024-06-05T13:51:14,437 Created temporary directory: /tmp/pip-unpack-vv4xih11
2024-06-05T13:51:14,438 Created temporary directory: /tmp/pip-unpack-ufi0immj
2024-06-05T13:51:14,446 Building wheels for collected packages: moleculekit
2024-06-05T13:51:14,450   Created temporary directory: /tmp/pip-wheel-migdce33
2024-06-05T13:51:14,450   Destination directory: /tmp/pip-wheel-migdce33
2024-06-05T13:51:14,452   Building wheel for moleculekit (pyproject.toml): started
2024-06-05T13:51:14,453   Running command Building wheel for moleculekit (pyproject.toml)
2024-06-05T13:51:16,689   running bdist_wheel
2024-06-05T13:51:16,703   running build
2024-06-05T13:51:16,704   running build_py
2024-06-05T13:51:16,711   creating build
2024-06-05T13:51:16,711   creating build/lib.linux-armv7l-cpython-311
2024-06-05T13:51:16,712   creating build/lib.linux-armv7l-cpython-311/moleculekit
2024-06-05T13:51:16,713   copying moleculekit/version.py -> build/lib.linux-armv7l-cpython-311/moleculekit
2024-06-05T13:51:16,715   copying moleculekit/config.py -> build/lib.linux-armv7l-cpython-311/moleculekit
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2024-06-05T13:51:16,719   copying moleculekit/readers.py -> build/lib.linux-armv7l-cpython-311/moleculekit
2024-06-05T13:51:16,723   copying moleculekit/pymolgraphics.py -> build/lib.linux-armv7l-cpython-311/moleculekit
2024-06-05T13:51:16,725   copying moleculekit/home.py -> build/lib.linux-armv7l-cpython-311/moleculekit
2024-06-05T13:51:16,726   copying moleculekit/viewer.py -> build/lib.linux-armv7l-cpython-311/moleculekit
2024-06-05T13:51:16,728   copying moleculekit/_version.py -> build/lib.linux-armv7l-cpython-311/moleculekit
2024-06-05T13:51:16,730   copying moleculekit/periodictable.py -> build/lib.linux-armv7l-cpython-311/moleculekit
2024-06-05T13:51:16,732   copying moleculekit/vmdgraphics.py -> build/lib.linux-armv7l-cpython-311/moleculekit
2024-06-05T13:51:16,738   copying moleculekit/bondguesser.py -> build/lib.linux-armv7l-cpython-311/moleculekit
2024-06-05T13:51:16,741   copying moleculekit/molecule.py -> build/lib.linux-armv7l-cpython-311/moleculekit
2024-06-05T13:51:16,745   copying moleculekit/__init__.py -> build/lib.linux-armv7l-cpython-311/moleculekit
2024-06-05T13:51:16,747   copying moleculekit/distance.py -> build/lib.linux-armv7l-cpython-311/moleculekit
2024-06-05T13:51:16,749   copying moleculekit/rdkitintegration.py -> build/lib.linux-armv7l-cpython-311/moleculekit
2024-06-05T13:51:16,751   copying moleculekit/dihedral.py -> build/lib.linux-armv7l-cpython-311/moleculekit
2024-06-05T13:51:16,753   copying moleculekit/util.py -> build/lib.linux-armv7l-cpython-311/moleculekit
2024-06-05T13:51:16,756   copying moleculekit/align.py -> build/lib.linux-armv7l-cpython-311/moleculekit
2024-06-05T13:51:16,758   copying moleculekit/writers.py -> build/lib.linux-armv7l-cpython-311/moleculekit
2024-06-05T13:51:16,761   copying moleculekit/vmdviewer.py -> build/lib.linux-armv7l-cpython-311/moleculekit
2024-06-05T13:51:16,764   copying moleculekit/rcsb.py -> build/lib.linux-armv7l-cpython-311/moleculekit
2024-06-05T13:51:16,766   creating build/lib.linux-armv7l-cpython-311/moleculekit/atomselect
2024-06-05T13:51:16,767   copying moleculekit/atomselect/analyze.py -> build/lib.linux-armv7l-cpython-311/moleculekit/atomselect
2024-06-05T13:51:16,770   copying moleculekit/atomselect/languageparser.py -> build/lib.linux-armv7l-cpython-311/moleculekit/atomselect
2024-06-05T13:51:16,775   copying moleculekit/atomselect/__init__.py -> build/lib.linux-armv7l-cpython-311/moleculekit/atomselect
2024-06-05T13:51:16,777   copying moleculekit/atomselect/atomselect.py -> build/lib.linux-armv7l-cpython-311/moleculekit/atomselect
2024-06-05T13:51:16,780   creating build/lib.linux-armv7l-cpython-311/moleculekit/ply
2024-06-05T13:51:16,781   copying moleculekit/ply/yacc.py -> build/lib.linux-armv7l-cpython-311/moleculekit/ply
2024-06-05T13:51:16,785   copying moleculekit/ply/lex.py -> build/lib.linux-armv7l-cpython-311/moleculekit/ply
2024-06-05T13:51:16,788   copying moleculekit/ply/__init__.py -> build/lib.linux-armv7l-cpython-311/moleculekit/ply
2024-06-05T13:51:16,791   creating build/lib.linux-armv7l-cpython-311/moleculekit/pdbx
2024-06-05T13:51:16,792   copying moleculekit/pdbx/__init__.py -> build/lib.linux-armv7l-cpython-311/moleculekit/pdbx
2024-06-05T13:51:16,795   creating build/lib.linux-armv7l-cpython-311/moleculekit/projections
2024-06-05T13:51:16,796   copying moleculekit/projections/metricplumed2.py -> build/lib.linux-armv7l-cpython-311/moleculekit/projections
2024-06-05T13:51:16,799   copying moleculekit/projections/metricrmsd.py -> build/lib.linux-armv7l-cpython-311/moleculekit/projections
2024-06-05T13:51:16,801   copying moleculekit/projections/metriccoordinate.py -> build/lib.linux-armv7l-cpython-311/moleculekit/projections
2024-06-05T13:51:16,804   copying moleculekit/projections/metricsphericalcoordinate.py -> build/lib.linux-armv7l-cpython-311/moleculekit/projections
2024-06-05T13:51:16,806   copying moleculekit/projections/metricfluctuation.py -> build/lib.linux-armv7l-cpython-311/moleculekit/projections
2024-06-05T13:51:16,809   copying moleculekit/projections/metricdihedral.py -> build/lib.linux-armv7l-cpython-311/moleculekit/projections
2024-06-05T13:51:16,812   copying moleculekit/projections/metricdistance.py -> build/lib.linux-armv7l-cpython-311/moleculekit/projections
2024-06-05T13:51:16,815   copying moleculekit/projections/metricsasa.py -> build/lib.linux-armv7l-cpython-311/moleculekit/projections
2024-06-05T13:51:16,817   copying moleculekit/projections/__init__.py -> build/lib.linux-armv7l-cpython-311/moleculekit/projections
2024-06-05T13:51:16,820   copying moleculekit/projections/metrictmscore.py -> build/lib.linux-armv7l-cpython-311/moleculekit/projections
2024-06-05T13:51:16,822   copying moleculekit/projections/metricgyration.py -> build/lib.linux-armv7l-cpython-311/moleculekit/projections
2024-06-05T13:51:16,824   copying moleculekit/projections/util.py -> build/lib.linux-armv7l-cpython-311/moleculekit/projections
2024-06-05T13:51:16,827   copying moleculekit/projections/metricshell.py -> build/lib.linux-armv7l-cpython-311/moleculekit/projections
2024-06-05T13:51:16,829   copying moleculekit/projections/projection.py -> build/lib.linux-armv7l-cpython-311/moleculekit/projections
2024-06-05T13:51:16,831   copying moleculekit/projections/metricsecondarystructure.py -> build/lib.linux-armv7l-cpython-311/moleculekit/projections
2024-06-05T13:51:16,835   creating build/lib.linux-armv7l-cpython-311/moleculekit/tools
2024-06-05T13:51:16,836   copying moleculekit/tools/docking.py -> build/lib.linux-armv7l-cpython-311/moleculekit/tools
2024-06-05T13:51:16,839   copying moleculekit/tools/moleculechecks.py -> build/lib.linux-armv7l-cpython-311/moleculekit/tools
2024-06-05T13:51:16,841   copying moleculekit/tools/modelling.py -> build/lib.linux-armv7l-cpython-311/moleculekit/tools
2024-06-05T13:51:16,843   copying moleculekit/tools/sequencestructuralalignment.py -> build/lib.linux-armv7l-cpython-311/moleculekit/tools
2024-06-05T13:51:16,846   copying moleculekit/tools/detect.py -> build/lib.linux-armv7l-cpython-311/moleculekit/tools
2024-06-05T13:51:16,849   copying moleculekit/tools/autosegment.py -> build/lib.linux-armv7l-cpython-311/moleculekit/tools
2024-06-05T13:51:16,851   copying moleculekit/tools/atomtyper.py -> build/lib.linux-armv7l-cpython-311/moleculekit/tools
2024-06-05T13:51:16,854   copying moleculekit/tools/hhblitsprofile.py -> build/lib.linux-armv7l-cpython-311/moleculekit/tools
2024-06-05T13:51:16,856   copying moleculekit/tools/voxeldescriptors.py -> build/lib.linux-armv7l-cpython-311/moleculekit/tools
2024-06-05T13:51:16,859   copying moleculekit/tools/__init__.py -> build/lib.linux-armv7l-cpython-311/moleculekit/tools
2024-06-05T13:51:16,861   copying moleculekit/tools/graphalignment.py -> build/lib.linux-armv7l-cpython-311/moleculekit/tools
2024-06-05T13:51:16,863   copying moleculekit/tools/crystalpacking.py -> build/lib.linux-armv7l-cpython-311/moleculekit/tools
2024-06-05T13:51:16,866   copying moleculekit/tools/preparation.py -> build/lib.linux-armv7l-cpython-311/moleculekit/tools
2024-06-05T13:51:16,869   copying moleculekit/tools/preparation_customres.py -> build/lib.linux-armv7l-cpython-311/moleculekit/tools
2024-06-05T13:51:16,872   creating build/lib.linux-armv7l-cpython-311/moleculekit/interactions
2024-06-05T13:51:16,873   copying moleculekit/interactions/interactions.py -> build/lib.linux-armv7l-cpython-311/moleculekit/interactions
2024-06-05T13:51:16,876   copying moleculekit/interactions/__init__.py -> build/lib.linux-armv7l-cpython-311/moleculekit/interactions
2024-06-05T13:51:16,878   creating build/lib.linux-armv7l-cpython-311/moleculekit/smallmol
2024-06-05T13:51:16,879   copying moleculekit/smallmol/smallmollib.py -> build/lib.linux-armv7l-cpython-311/moleculekit/smallmol
2024-06-05T13:51:16,881   copying moleculekit/smallmol/test_smallmol.py -> build/lib.linux-armv7l-cpython-311/moleculekit/smallmol
2024-06-05T13:51:16,883   copying moleculekit/smallmol/smallmolcdp.py -> build/lib.linux-armv7l-cpython-311/moleculekit/smallmol
2024-06-05T13:51:16,886   copying moleculekit/smallmol/__init__.py -> build/lib.linux-armv7l-cpython-311/moleculekit/smallmol
2024-06-05T13:51:16,887   copying moleculekit/smallmol/test_smallmollib.py -> build/lib.linux-armv7l-cpython-311/moleculekit/smallmol
2024-06-05T13:51:16,889   copying moleculekit/smallmol/util.py -> build/lib.linux-armv7l-cpython-311/moleculekit/smallmol
2024-06-05T13:51:16,892   copying moleculekit/smallmol/smallmol.py -> build/lib.linux-armv7l-cpython-311/moleculekit/smallmol
2024-06-05T13:51:16,895   creating build/lib.linux-armv7l-cpython-311/moleculekit/fileformats
2024-06-05T13:51:16,896   copying moleculekit/fileformats/utils.py -> build/lib.linux-armv7l-cpython-311/moleculekit/fileformats
2024-06-05T13:51:16,899   copying moleculekit/fileformats/netcdf.py -> build/lib.linux-armv7l-cpython-311/moleculekit/fileformats
2024-06-05T13:51:16,901   copying moleculekit/fileformats/__init__.py -> build/lib.linux-armv7l-cpython-311/moleculekit/fileformats
2024-06-05T13:51:16,903   creating build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/tests
2024-06-05T13:51:16,904   copying moleculekit/pdbx/tests/PdbxReadWriteTests.py -> build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/tests
2024-06-05T13:51:16,907   copying moleculekit/pdbx/tests/__init__.py -> build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/tests
2024-06-05T13:51:16,908   copying moleculekit/pdbx/tests/PdbxWriterTests.py -> build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/tests
2024-06-05T13:51:16,910   copying moleculekit/pdbx/tests/PdbxReaderTests.py -> build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/tests
2024-06-05T13:51:16,913   creating build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/writer
2024-06-05T13:51:16,913   copying moleculekit/pdbx/writer/__init__.py -> build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/writer
2024-06-05T13:51:16,915   copying moleculekit/pdbx/writer/PdbxWriter.py -> build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/writer
2024-06-05T13:51:16,918   creating build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/reader
2024-06-05T13:51:16,919   copying moleculekit/pdbx/reader/PdbxParser.py -> build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/reader
2024-06-05T13:51:16,921   copying moleculekit/pdbx/reader/PdbxReader.py -> build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/reader
2024-06-05T13:51:16,923   copying moleculekit/pdbx/reader/__init__.py -> build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/reader
2024-06-05T13:51:16,925   copying moleculekit/pdbx/reader/PdbxContainers.py -> build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/reader
2024-06-05T13:51:16,928   creating build/lib.linux-armv7l-cpython-311/moleculekit/tools/obabel_tools
2024-06-05T13:51:16,928   copying moleculekit/tools/obabel_tools/obabel_cli.py -> build/lib.linux-armv7l-cpython-311/moleculekit/tools/obabel_tools
2024-06-05T13:51:16,930   copying moleculekit/tools/obabel_tools/__init__.py -> build/lib.linux-armv7l-cpython-311/moleculekit/tools/obabel_tools
2024-06-05T13:51:16,933   creating build/lib.linux-armv7l-cpython-311/moleculekit/smallmol/tools
2024-06-05T13:51:16,933   copying moleculekit/smallmol/tools/clustering.py -> build/lib.linux-armv7l-cpython-311/moleculekit/smallmol/tools
2024-06-05T13:51:16,936   copying moleculekit/smallmol/tools/__init__.py -> build/lib.linux-armv7l-cpython-311/moleculekit/smallmol/tools
2024-06-05T13:51:16,937   copying moleculekit/smallmol/tools/test_tools.py -> build/lib.linux-armv7l-cpython-311/moleculekit/smallmol/tools
2024-06-05T13:51:16,939   copying moleculekit/smallmol/tools/restrainedembed.py -> build/lib.linux-armv7l-cpython-311/moleculekit/smallmol/tools
2024-06-05T13:51:16,941   running egg_info
2024-06-05T13:51:16,946   writing moleculekit.egg-info/PKG-INFO
2024-06-05T13:51:16,949   writing dependency_links to moleculekit.egg-info/dependency_links.txt
2024-06-05T13:51:16,951   writing requirements to moleculekit.egg-info/requires.txt
2024-06-05T13:51:16,952   writing top-level names to moleculekit.egg-info/top_level.txt
2024-06-05T13:51:16,968   dependency /tmp/pip-build-env-cpcib7j5/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-06-05T13:51:16,969   dependency /tmp/pip-build-env-cpcib7j5/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-06-05T13:51:16,969   dependency /tmp/pip-build-env-cpcib7j5/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-06-05T13:51:16,970   dependency /tmp/pip-build-env-cpcib7j5/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-06-05T13:51:16,970   dependency /tmp/pip-build-env-cpcib7j5/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-06-05T13:51:16,971   dependency /tmp/pip-build-env-cpcib7j5/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-06-05T13:51:16,971   dependency /tmp/pip-build-env-cpcib7j5/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-06-05T13:51:16,972   dependency /tmp/pip-build-env-cpcib7j5/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-06-05T13:51:16,972   dependency /tmp/pip-build-env-cpcib7j5/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-06-05T13:51:16,973   dependency /tmp/pip-build-env-cpcib7j5/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-06-05T13:51:16,974   dependency /tmp/pip-build-env-cpcib7j5/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-06-05T13:51:16,974   dependency /tmp/pip-build-env-cpcib7j5/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-06-05T13:51:16,975   dependency /tmp/pip-build-env-cpcib7j5/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-06-05T13:51:16,975   dependency /tmp/pip-build-env-cpcib7j5/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-06-05T13:51:16,976   dependency /tmp/pip-build-env-cpcib7j5/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-06-05T13:51:16,976   dependency /tmp/pip-build-env-cpcib7j5/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-06-05T13:51:16,977   dependency /tmp/pip-build-env-cpcib7j5/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-06-05T13:51:16,977   dependency /tmp/pip-build-env-cpcib7j5/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-06-05T13:51:16,978   dependency /tmp/pip-build-env-cpcib7j5/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-06-05T13:51:16,978   dependency /tmp/pip-build-env-cpcib7j5/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-06-05T13:51:16,979   dependency /tmp/pip-build-env-cpcib7j5/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-06-05T13:51:16,980   dependency /tmp/pip-build-env-cpcib7j5/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-06-05T13:51:16,980   dependency /tmp/pip-build-env-cpcib7j5/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-06-05T13:51:16,981   dependency /tmp/pip-build-env-cpcib7j5/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-06-05T13:51:16,981   dependency /tmp/pip-build-env-cpcib7j5/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-06-05T13:51:16,982   dependency /tmp/pip-build-env-cpcib7j5/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-06-05T13:51:16,982   dependency /tmp/pip-build-env-cpcib7j5/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-06-05T13:51:16,983   dependency /tmp/pip-build-env-cpcib7j5/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-06-05T13:51:16,984   dependency /tmp/pip-build-env-cpcib7j5/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-06-05T13:51:16,984   dependency /tmp/pip-build-env-cpcib7j5/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-06-05T13:51:16,985   dependency /tmp/pip-build-env-cpcib7j5/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-06-05T13:51:16,985   dependency /tmp/pip-build-env-cpcib7j5/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-06-05T13:51:16,986   dependency /tmp/pip-build-env-cpcib7j5/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-06-05T13:51:16,986   dependency /tmp/pip-build-env-cpcib7j5/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-06-05T13:51:16,987   dependency /tmp/pip-build-env-cpcib7j5/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-06-05T13:51:16,987   dependency /tmp/pip-build-env-cpcib7j5/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-06-05T13:51:16,988   dependency /tmp/pip-build-env-cpcib7j5/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-06-05T13:51:16,988   dependency /tmp/pip-build-env-cpcib7j5/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-06-05T13:51:16,989   dependency /tmp/pip-build-env-cpcib7j5/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-06-05T13:51:16,990   dependency /tmp/pip-build-env-cpcib7j5/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-06-05T13:51:16,990   dependency /tmp/pip-build-env-cpcib7j5/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-06-05T13:51:16,991   dependency /tmp/pip-build-env-cpcib7j5/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-06-05T13:51:16,991   dependency /tmp/pip-build-env-cpcib7j5/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-06-05T13:51:16,992   dependency /tmp/pip-build-env-cpcib7j5/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-06-05T13:51:16,992   dependency /tmp/pip-build-env-cpcib7j5/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-06-05T13:51:16,993   dependency /tmp/pip-build-env-cpcib7j5/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-06-05T13:51:16,994   dependency /tmp/pip-build-env-cpcib7j5/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-06-05T13:51:16,994   dependency /tmp/pip-build-env-cpcib7j5/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-06-05T13:51:16,994   dependency /tmp/pip-build-env-cpcib7j5/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-06-05T13:51:16,995   dependency /tmp/pip-build-env-cpcib7j5/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-06-05T13:51:16,995   dependency /tmp/pip-build-env-cpcib7j5/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-06-05T13:51:16,995   dependency /tmp/pip-build-env-cpcib7j5/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-06-05T13:51:16,996   dependency /tmp/pip-build-env-cpcib7j5/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-06-05T13:51:16,996   dependency /tmp/pip-build-env-cpcib7j5/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-06-05T13:51:16,997   dependency /tmp/pip-build-env-cpcib7j5/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-06-05T13:51:16,997   dependency /tmp/pip-build-env-cpcib7j5/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-06-05T13:51:16,998   dependency /tmp/pip-build-env-cpcib7j5/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-06-05T13:51:16,998   dependency /tmp/pip-build-env-cpcib7j5/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-06-05T13:51:16,999   dependency /tmp/pip-build-env-cpcib7j5/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-06-05T13:51:16,999   dependency /tmp/pip-build-env-cpcib7j5/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-06-05T13:51:17,000   dependency /tmp/pip-build-env-cpcib7j5/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-06-05T13:51:17,000   dependency /tmp/pip-build-env-cpcib7j5/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-06-05T13:51:17,001   dependency /tmp/pip-build-env-cpcib7j5/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-06-05T13:51:17,002   dependency /tmp/pip-build-env-cpcib7j5/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-06-05T13:51:17,002   dependency /tmp/pip-build-env-cpcib7j5/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-06-05T13:51:17,003   dependency /tmp/pip-build-env-cpcib7j5/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-06-05T13:51:17,003   dependency /tmp/pip-build-env-cpcib7j5/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-06-05T13:51:17,004   dependency /tmp/pip-build-env-cpcib7j5/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-06-05T13:51:17,004   dependency /tmp/pip-build-env-cpcib7j5/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-06-05T13:51:17,005   dependency /tmp/pip-build-env-cpcib7j5/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-06-05T13:51:17,005   dependency /tmp/pip-build-env-cpcib7j5/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-06-05T13:51:17,005   dependency /tmp/pip-build-env-cpcib7j5/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-06-05T13:51:17,006   dependency /tmp/pip-build-env-cpcib7j5/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-06-05T13:51:17,007   dependency /tmp/pip-build-env-cpcib7j5/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-06-05T13:51:17,007   dependency /tmp/pip-build-env-cpcib7j5/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-06-05T13:51:17,008   reading manifest file 'moleculekit.egg-info/SOURCES.txt'
2024-06-05T13:51:17,008   reading manifest template 'MANIFEST.in'
2024-06-05T13:51:17,236   no previously-included directories found matching 'moleculekit/test-data'
2024-06-05T13:51:17,238   no previously-included directories found matching 'moleculekit/tests'
2024-06-05T13:51:17,239   no previously-included directories found matching 'package'
2024-06-05T13:51:17,240   adding license file 'LICENSE'
2024-06-05T13:51:17,262   writing manifest file 'moleculekit.egg-info/SOURCES.txt'
2024-06-05T13:51:17,274   /tmp/pip-build-env-cpcib7j5/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.atomselect_utils' is absent from the `packages` configuration.
2024-06-05T13:51:17,275   !!

2024-06-05T13:51:17,276           ********************************************************************************
2024-06-05T13:51:17,277           ############################
2024-06-05T13:51:17,278           # Package would be ignored #
2024-06-05T13:51:17,279           ############################
2024-06-05T13:51:17,280           Python recognizes 'moleculekit.atomselect_utils' as an importable package[^1],
2024-06-05T13:51:17,280           but it is absent from setuptools' `packages` configuration.

2024-06-05T13:51:17,282           This leads to an ambiguous overall configuration. If you want to distribute this
2024-06-05T13:51:17,283           package, please make sure that 'moleculekit.atomselect_utils' is explicitly added
2024-06-05T13:51:17,283           to the `packages` configuration field.

2024-06-05T13:51:17,285           Alternatively, you can also rely on setuptools' discovery methods
2024-06-05T13:51:17,285           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-06-05T13:51:17,286           instead of `find_packages(...)`/`find:`).

2024-06-05T13:51:17,287           You can read more about "package discovery" on setuptools documentation page:

2024-06-05T13:51:17,288           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-06-05T13:51:17,289           If you don't want 'moleculekit.atomselect_utils' to be distributed and are
2024-06-05T13:51:17,290           already explicitly excluding 'moleculekit.atomselect_utils' via
2024-06-05T13:51:17,290           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-06-05T13:51:17,291           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-06-05T13:51:17,291           combination with a more fine grained `package-data` configuration.

2024-06-05T13:51:17,292           You can read more about "package data files" on setuptools documentation page:

2024-06-05T13:51:17,293           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-06-05T13:51:17,294           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-06-05T13:51:17,295                 even if it does not contain any `.py` files.
2024-06-05T13:51:17,295                 On the other hand, currently there is no concept of package data
2024-06-05T13:51:17,296                 directory, all directories are treated like packages.
2024-06-05T13:51:17,296           ********************************************************************************

2024-06-05T13:51:17,297   !!
2024-06-05T13:51:17,298     check.warn(importable)
2024-06-05T13:51:17,298   /tmp/pip-build-env-cpcib7j5/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.bondguesser_utils' is absent from the `packages` configuration.
2024-06-05T13:51:17,299   !!

2024-06-05T13:51:17,300           ********************************************************************************
2024-06-05T13:51:17,301           ############################
2024-06-05T13:51:17,302           # Package would be ignored #
2024-06-05T13:51:17,302           ############################
2024-06-05T13:51:17,303           Python recognizes 'moleculekit.bondguesser_utils' as an importable package[^1],
2024-06-05T13:51:17,304           but it is absent from setuptools' `packages` configuration.

2024-06-05T13:51:17,305           This leads to an ambiguous overall configuration. If you want to distribute this
2024-06-05T13:51:17,306           package, please make sure that 'moleculekit.bondguesser_utils' is explicitly added
2024-06-05T13:51:17,306           to the `packages` configuration field.

2024-06-05T13:51:17,307           Alternatively, you can also rely on setuptools' discovery methods
2024-06-05T13:51:17,308           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-06-05T13:51:17,309           instead of `find_packages(...)`/`find:`).

2024-06-05T13:51:17,310           You can read more about "package discovery" on setuptools documentation page:

2024-06-05T13:51:17,311           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-06-05T13:51:17,312           If you don't want 'moleculekit.bondguesser_utils' to be distributed and are
2024-06-05T13:51:17,313           already explicitly excluding 'moleculekit.bondguesser_utils' via
2024-06-05T13:51:17,313           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-06-05T13:51:17,314           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-06-05T13:51:17,314           combination with a more fine grained `package-data` configuration.

2024-06-05T13:51:17,316           You can read more about "package data files" on setuptools documentation page:

2024-06-05T13:51:17,317           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-06-05T13:51:17,318           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-06-05T13:51:17,319                 even if it does not contain any `.py` files.
2024-06-05T13:51:17,319                 On the other hand, currently there is no concept of package data
2024-06-05T13:51:17,320                 directory, all directories are treated like packages.
2024-06-05T13:51:17,320           ********************************************************************************

2024-06-05T13:51:17,321   !!
2024-06-05T13:51:17,321     check.warn(importable)
2024-06-05T13:51:17,322   /tmp/pip-build-env-cpcib7j5/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.cython_utils' is absent from the `packages` configuration.
2024-06-05T13:51:17,322   !!

2024-06-05T13:51:17,323           ********************************************************************************
2024-06-05T13:51:17,324           ############################
2024-06-05T13:51:17,324           # Package would be ignored #
2024-06-05T13:51:17,325           ############################
2024-06-05T13:51:17,325           Python recognizes 'moleculekit.cython_utils' as an importable package[^1],
2024-06-05T13:51:17,326           but it is absent from setuptools' `packages` configuration.

2024-06-05T13:51:17,326           This leads to an ambiguous overall configuration. If you want to distribute this
2024-06-05T13:51:17,327           package, please make sure that 'moleculekit.cython_utils' is explicitly added
2024-06-05T13:51:17,328           to the `packages` configuration field.

2024-06-05T13:51:17,329           Alternatively, you can also rely on setuptools' discovery methods
2024-06-05T13:51:17,330           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-06-05T13:51:17,330           instead of `find_packages(...)`/`find:`).

2024-06-05T13:51:17,332           You can read more about "package discovery" on setuptools documentation page:

2024-06-05T13:51:17,333           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-06-05T13:51:17,334           If you don't want 'moleculekit.cython_utils' to be distributed and are
2024-06-05T13:51:17,335           already explicitly excluding 'moleculekit.cython_utils' via
2024-06-05T13:51:17,336           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-06-05T13:51:17,336           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-06-05T13:51:17,337           combination with a more fine grained `package-data` configuration.

2024-06-05T13:51:17,338           You can read more about "package data files" on setuptools documentation page:

2024-06-05T13:51:17,339           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-06-05T13:51:17,341           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-06-05T13:51:17,342                 even if it does not contain any `.py` files.
2024-06-05T13:51:17,342                 On the other hand, currently there is no concept of package data
2024-06-05T13:51:17,343                 directory, all directories are treated like packages.
2024-06-05T13:51:17,343           ********************************************************************************

2024-06-05T13:51:17,345   !!
2024-06-05T13:51:17,345     check.warn(importable)
2024-06-05T13:51:17,346   /tmp/pip-build-env-cpcib7j5/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.distance_utils' is absent from the `packages` configuration.
2024-06-05T13:51:17,347   !!

2024-06-05T13:51:17,348           ********************************************************************************
2024-06-05T13:51:17,349           ############################
2024-06-05T13:51:17,349           # Package would be ignored #
2024-06-05T13:51:17,350           ############################
2024-06-05T13:51:17,351           Python recognizes 'moleculekit.distance_utils' as an importable package[^1],
2024-06-05T13:51:17,351           but it is absent from setuptools' `packages` configuration.

2024-06-05T13:51:17,352           This leads to an ambiguous overall configuration. If you want to distribute this
2024-06-05T13:51:17,352           package, please make sure that 'moleculekit.distance_utils' is explicitly added
2024-06-05T13:51:17,353           to the `packages` configuration field.

2024-06-05T13:51:17,353           Alternatively, you can also rely on setuptools' discovery methods
2024-06-05T13:51:17,354           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-06-05T13:51:17,354           instead of `find_packages(...)`/`find:`).

2024-06-05T13:51:17,355           You can read more about "package discovery" on setuptools documentation page:

2024-06-05T13:51:17,356           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-06-05T13:51:17,357           If you don't want 'moleculekit.distance_utils' to be distributed and are
2024-06-05T13:51:17,357           already explicitly excluding 'moleculekit.distance_utils' via
2024-06-05T13:51:17,358           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-06-05T13:51:17,358           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-06-05T13:51:17,359           combination with a more fine grained `package-data` configuration.

2024-06-05T13:51:17,360           You can read more about "package data files" on setuptools documentation page:

2024-06-05T13:51:17,361           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-06-05T13:51:17,363           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-06-05T13:51:17,363                 even if it does not contain any `.py` files.
2024-06-05T13:51:17,364                 On the other hand, currently there is no concept of package data
2024-06-05T13:51:17,365                 directory, all directories are treated like packages.
2024-06-05T13:51:17,365           ********************************************************************************

2024-06-05T13:51:17,367   !!
2024-06-05T13:51:17,367     check.warn(importable)
2024-06-05T13:51:17,368   /tmp/pip-build-env-cpcib7j5/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.fileformats.binpos' is absent from the `packages` configuration.
2024-06-05T13:51:17,368   !!

2024-06-05T13:51:17,370           ********************************************************************************
2024-06-05T13:51:17,370           ############################
2024-06-05T13:51:17,371           # Package would be ignored #
2024-06-05T13:51:17,372           ############################
2024-06-05T13:51:17,372           Python recognizes 'moleculekit.fileformats.binpos' as an importable package[^1],
2024-06-05T13:51:17,373           but it is absent from setuptools' `packages` configuration.

2024-06-05T13:51:17,374           This leads to an ambiguous overall configuration. If you want to distribute this
2024-06-05T13:51:17,374           package, please make sure that 'moleculekit.fileformats.binpos' is explicitly added
2024-06-05T13:51:17,375           to the `packages` configuration field.

2024-06-05T13:51:17,376           Alternatively, you can also rely on setuptools' discovery methods
2024-06-05T13:51:17,376           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-06-05T13:51:17,377           instead of `find_packages(...)`/`find:`).

2024-06-05T13:51:17,379           You can read more about "package discovery" on setuptools documentation page:

2024-06-05T13:51:17,380           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-06-05T13:51:17,381           If you don't want 'moleculekit.fileformats.binpos' to be distributed and are
2024-06-05T13:51:17,382           already explicitly excluding 'moleculekit.fileformats.binpos' via
2024-06-05T13:51:17,383           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-06-05T13:51:17,383           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-06-05T13:51:17,384           combination with a more fine grained `package-data` configuration.

2024-06-05T13:51:17,385           You can read more about "package data files" on setuptools documentation page:

2024-06-05T13:51:17,385           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-06-05T13:51:17,387           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-06-05T13:51:17,387                 even if it does not contain any `.py` files.
2024-06-05T13:51:17,388                 On the other hand, currently there is no concept of package data
2024-06-05T13:51:17,388                 directory, all directories are treated like packages.
2024-06-05T13:51:17,389           ********************************************************************************

2024-06-05T13:51:17,390   !!
2024-06-05T13:51:17,390     check.warn(importable)
2024-06-05T13:51:17,391   /tmp/pip-build-env-cpcib7j5/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.fileformats.binpos.include' is absent from the `packages` configuration.
2024-06-05T13:51:17,391   !!

2024-06-05T13:51:17,392           ********************************************************************************
2024-06-05T13:51:17,393           ############################
2024-06-05T13:51:17,393           # Package would be ignored #
2024-06-05T13:51:17,394           ############################
2024-06-05T13:51:17,395           Python recognizes 'moleculekit.fileformats.binpos.include' as an importable package[^1],
2024-06-05T13:51:17,396           but it is absent from setuptools' `packages` configuration.

2024-06-05T13:51:17,397           This leads to an ambiguous overall configuration. If you want to distribute this
2024-06-05T13:51:17,398           package, please make sure that 'moleculekit.fileformats.binpos.include' is explicitly added
2024-06-05T13:51:17,398           to the `packages` configuration field.

2024-06-05T13:51:17,400           Alternatively, you can also rely on setuptools' discovery methods
2024-06-05T13:51:17,401           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-06-05T13:51:17,401           instead of `find_packages(...)`/`find:`).

2024-06-05T13:51:17,403           You can read more about "package discovery" on setuptools documentation page:

2024-06-05T13:51:17,404           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-06-05T13:51:17,405           If you don't want 'moleculekit.fileformats.binpos.include' to be distributed and are
2024-06-05T13:51:17,406           already explicitly excluding 'moleculekit.fileformats.binpos.include' via
2024-06-05T13:51:17,406           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-06-05T13:51:17,407           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-06-05T13:51:17,408           combination with a more fine grained `package-data` configuration.

2024-06-05T13:51:17,409           You can read more about "package data files" on setuptools documentation page:

2024-06-05T13:51:17,410           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-06-05T13:51:17,412           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-06-05T13:51:17,413                 even if it does not contain any `.py` files.
2024-06-05T13:51:17,413                 On the other hand, currently there is no concept of package data
2024-06-05T13:51:17,414                 directory, all directories are treated like packages.
2024-06-05T13:51:17,415           ********************************************************************************

2024-06-05T13:51:17,416   !!
2024-06-05T13:51:17,417     check.warn(importable)
2024-06-05T13:51:17,417   /tmp/pip-build-env-cpcib7j5/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.fileformats.binpos.src' is absent from the `packages` configuration.
2024-06-05T13:51:17,418   !!

2024-06-05T13:51:17,419           ********************************************************************************
2024-06-05T13:51:17,419           ############################
2024-06-05T13:51:17,419           # Package would be ignored #
2024-06-05T13:51:17,420           ############################
2024-06-05T13:51:17,420           Python recognizes 'moleculekit.fileformats.binpos.src' as an importable package[^1],
2024-06-05T13:51:17,421           but it is absent from setuptools' `packages` configuration.

2024-06-05T13:51:17,422           This leads to an ambiguous overall configuration. If you want to distribute this
2024-06-05T13:51:17,422           package, please make sure that 'moleculekit.fileformats.binpos.src' is explicitly added
2024-06-05T13:51:17,423           to the `packages` configuration field.

2024-06-05T13:51:17,424           Alternatively, you can also rely on setuptools' discovery methods
2024-06-05T13:51:17,424           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-06-05T13:51:17,424           instead of `find_packages(...)`/`find:`).

2024-06-05T13:51:17,425           You can read more about "package discovery" on setuptools documentation page:

2024-06-05T13:51:17,426           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-06-05T13:51:17,428           If you don't want 'moleculekit.fileformats.binpos.src' to be distributed and are
2024-06-05T13:51:17,428           already explicitly excluding 'moleculekit.fileformats.binpos.src' via
2024-06-05T13:51:17,429           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-06-05T13:51:17,430           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-06-05T13:51:17,430           combination with a more fine grained `package-data` configuration.

2024-06-05T13:51:17,432           You can read more about "package data files" on setuptools documentation page:

2024-06-05T13:51:17,433           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-06-05T13:51:17,435           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-06-05T13:51:17,436                 even if it does not contain any `.py` files.
2024-06-05T13:51:17,437                 On the other hand, currently there is no concept of package data
2024-06-05T13:51:17,437                 directory, all directories are treated like packages.
2024-06-05T13:51:17,438           ********************************************************************************

2024-06-05T13:51:17,439   !!
2024-06-05T13:51:17,440     check.warn(importable)
2024-06-05T13:51:17,440   /tmp/pip-build-env-cpcib7j5/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.fileformats.dcd' is absent from the `packages` configuration.
2024-06-05T13:51:17,441   !!

2024-06-05T13:51:17,442           ********************************************************************************
2024-06-05T13:51:17,443           ############################
2024-06-05T13:51:17,443           # Package would be ignored #
2024-06-05T13:51:17,444           ############################
2024-06-05T13:51:17,445           Python recognizes 'moleculekit.fileformats.dcd' as an importable package[^1],
2024-06-05T13:51:17,445           but it is absent from setuptools' `packages` configuration.

2024-06-05T13:51:17,447           This leads to an ambiguous overall configuration. If you want to distribute this
2024-06-05T13:51:17,447           package, please make sure that 'moleculekit.fileformats.dcd' is explicitly added
2024-06-05T13:51:17,448           to the `packages` configuration field.

2024-06-05T13:51:17,450           Alternatively, you can also rely on setuptools' discovery methods
2024-06-05T13:51:17,450           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-06-05T13:51:17,450           instead of `find_packages(...)`/`find:`).

2024-06-05T13:51:17,451           You can read more about "package discovery" on setuptools documentation page:

2024-06-05T13:51:17,452           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-06-05T13:51:17,453           If you don't want 'moleculekit.fileformats.dcd' to be distributed and are
2024-06-05T13:51:17,454           already explicitly excluding 'moleculekit.fileformats.dcd' via
2024-06-05T13:51:17,454           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-06-05T13:51:17,454           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-06-05T13:51:17,455           combination with a more fine grained `package-data` configuration.

2024-06-05T13:51:17,456           You can read more about "package data files" on setuptools documentation page:

2024-06-05T13:51:17,457           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-06-05T13:51:17,458           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-06-05T13:51:17,459                 even if it does not contain any `.py` files.
2024-06-05T13:51:17,459                 On the other hand, currently there is no concept of package data
2024-06-05T13:51:17,460                 directory, all directories are treated like packages.
2024-06-05T13:51:17,460           ********************************************************************************

2024-06-05T13:51:17,461   !!
2024-06-05T13:51:17,462     check.warn(importable)
2024-06-05T13:51:17,462   /tmp/pip-build-env-cpcib7j5/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.fileformats.dcd.include' is absent from the `packages` configuration.
2024-06-05T13:51:17,463   !!

2024-06-05T13:51:17,464           ********************************************************************************
2024-06-05T13:51:17,465           ############################
2024-06-05T13:51:17,466           # Package would be ignored #
2024-06-05T13:51:17,466           ############################
2024-06-05T13:51:17,467           Python recognizes 'moleculekit.fileformats.dcd.include' as an importable package[^1],
2024-06-05T13:51:17,468           but it is absent from setuptools' `packages` configuration.

2024-06-05T13:51:17,469           This leads to an ambiguous overall configuration. If you want to distribute this
2024-06-05T13:51:17,470           package, please make sure that 'moleculekit.fileformats.dcd.include' is explicitly added
2024-06-05T13:51:17,470           to the `packages` configuration field.

2024-06-05T13:51:17,471           Alternatively, you can also rely on setuptools' discovery methods
2024-06-05T13:51:17,472           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-06-05T13:51:17,473           instead of `find_packages(...)`/`find:`).

2024-06-05T13:51:17,474           You can read more about "package discovery" on setuptools documentation page:

2024-06-05T13:51:17,475           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-06-05T13:51:17,476           If you don't want 'moleculekit.fileformats.dcd.include' to be distributed and are
2024-06-05T13:51:17,477           already explicitly excluding 'moleculekit.fileformats.dcd.include' via
2024-06-05T13:51:17,477           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-06-05T13:51:17,478           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-06-05T13:51:17,479           combination with a more fine grained `package-data` configuration.

2024-06-05T13:51:17,480           You can read more about "package data files" on setuptools documentation page:

2024-06-05T13:51:17,482           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-06-05T13:51:17,483           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-06-05T13:51:17,483                 even if it does not contain any `.py` files.
2024-06-05T13:51:17,484                 On the other hand, currently there is no concept of package data
2024-06-05T13:51:17,484                 directory, all directories are treated like packages.
2024-06-05T13:51:17,485           ********************************************************************************

2024-06-05T13:51:17,486   !!
2024-06-05T13:51:17,486     check.warn(importable)
2024-06-05T13:51:17,487   /tmp/pip-build-env-cpcib7j5/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.fileformats.dcd.src' is absent from the `packages` configuration.
2024-06-05T13:51:17,487   !!

2024-06-05T13:51:17,488           ********************************************************************************
2024-06-05T13:51:17,489           ############################
2024-06-05T13:51:17,489           # Package would be ignored #
2024-06-05T13:51:17,490           ############################
2024-06-05T13:51:17,490           Python recognizes 'moleculekit.fileformats.dcd.src' as an importable package[^1],
2024-06-05T13:51:17,491           but it is absent from setuptools' `packages` configuration.

2024-06-05T13:51:17,492           This leads to an ambiguous overall configuration. If you want to distribute this
2024-06-05T13:51:17,492           package, please make sure that 'moleculekit.fileformats.dcd.src' is explicitly added
2024-06-05T13:51:17,493           to the `packages` configuration field.

2024-06-05T13:51:17,494           Alternatively, you can also rely on setuptools' discovery methods
2024-06-05T13:51:17,495           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-06-05T13:51:17,495           instead of `find_packages(...)`/`find:`).

2024-06-05T13:51:17,496           You can read more about "package discovery" on setuptools documentation page:

2024-06-05T13:51:17,498           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-06-05T13:51:17,499           If you don't want 'moleculekit.fileformats.dcd.src' to be distributed and are
2024-06-05T13:51:17,500           already explicitly excluding 'moleculekit.fileformats.dcd.src' via
2024-06-05T13:51:17,500           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-06-05T13:51:17,501           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-06-05T13:51:17,502           combination with a more fine grained `package-data` configuration.

2024-06-05T13:51:17,503           You can read more about "package data files" on setuptools documentation page:

2024-06-05T13:51:17,505           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-06-05T13:51:17,506           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-06-05T13:51:17,507                 even if it does not contain any `.py` files.
2024-06-05T13:51:17,508                 On the other hand, currently there is no concept of package data
2024-06-05T13:51:17,508                 directory, all directories are treated like packages.
2024-06-05T13:51:17,509           ********************************************************************************

2024-06-05T13:51:17,510   !!
2024-06-05T13:51:17,511     check.warn(importable)
2024-06-05T13:51:17,512   /tmp/pip-build-env-cpcib7j5/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.fileformats.xtc' is absent from the `packages` configuration.
2024-06-05T13:51:17,513   !!

2024-06-05T13:51:17,514           ********************************************************************************
2024-06-05T13:51:17,515           ############################
2024-06-05T13:51:17,515           # Package would be ignored #
2024-06-05T13:51:17,516           ############################
2024-06-05T13:51:17,517           Python recognizes 'moleculekit.fileformats.xtc' as an importable package[^1],
2024-06-05T13:51:17,518           but it is absent from setuptools' `packages` configuration.

2024-06-05T13:51:17,519           This leads to an ambiguous overall configuration. If you want to distribute this
2024-06-05T13:51:17,519           package, please make sure that 'moleculekit.fileformats.xtc' is explicitly added
2024-06-05T13:51:17,520           to the `packages` configuration field.

2024-06-05T13:51:17,521           Alternatively, you can also rely on setuptools' discovery methods
2024-06-05T13:51:17,521           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-06-05T13:51:17,523           instead of `find_packages(...)`/`find:`).

2024-06-05T13:51:17,526           You can read more about "package discovery" on setuptools documentation page:

2024-06-05T13:51:17,543           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-06-05T13:51:17,544           If you don't want 'moleculekit.fileformats.xtc' to be distributed and are
2024-06-05T13:51:17,544           already explicitly excluding 'moleculekit.fileformats.xtc' via
2024-06-05T13:51:17,545           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-06-05T13:51:17,545           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-06-05T13:51:17,546           combination with a more fine grained `package-data` configuration.

2024-06-05T13:51:17,547           You can read more about "package data files" on setuptools documentation page:

2024-06-05T13:51:17,548           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-06-05T13:51:17,550           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-06-05T13:51:17,551                 even if it does not contain any `.py` files.
2024-06-05T13:51:17,552                 On the other hand, currently there is no concept of package data
2024-06-05T13:51:17,552                 directory, all directories are treated like packages.
2024-06-05T13:51:17,553           ********************************************************************************

2024-06-05T13:51:17,555   !!
2024-06-05T13:51:17,555     check.warn(importable)
2024-06-05T13:51:17,556   /tmp/pip-build-env-cpcib7j5/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.fileformats.xtc.include' is absent from the `packages` configuration.
2024-06-05T13:51:17,557   !!

2024-06-05T13:51:17,558           ********************************************************************************
2024-06-05T13:51:17,559           ############################
2024-06-05T13:51:17,560           # Package would be ignored #
2024-06-05T13:51:17,561           ############################
2024-06-05T13:51:17,563           Python recognizes 'moleculekit.fileformats.xtc.include' as an importable package[^1],
2024-06-05T13:51:17,564           but it is absent from setuptools' `packages` configuration.

2024-06-05T13:51:17,568           This leads to an ambiguous overall configuration. If you want to distribute this
2024-06-05T13:51:17,570           package, please make sure that 'moleculekit.fileformats.xtc.include' is explicitly added
2024-06-05T13:51:17,573           to the `packages` configuration field.

2024-06-05T13:51:17,574           Alternatively, you can also rely on setuptools' discovery methods
2024-06-05T13:51:17,577           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-06-05T13:51:17,578           instead of `find_packages(...)`/`find:`).

2024-06-05T13:51:17,582           You can read more about "package discovery" on setuptools documentation page:

2024-06-05T13:51:17,584           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-06-05T13:51:17,586           If you don't want 'moleculekit.fileformats.xtc.include' to be distributed and are
2024-06-05T13:51:17,586           already explicitly excluding 'moleculekit.fileformats.xtc.include' via
2024-06-05T13:51:17,587           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-06-05T13:51:17,587           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-06-05T13:51:17,588           combination with a more fine grained `package-data` configuration.

2024-06-05T13:51:17,590           You can read more about "package data files" on setuptools documentation page:

2024-06-05T13:51:17,591           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-06-05T13:51:17,593           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-06-05T13:51:17,593                 even if it does not contain any `.py` files.
2024-06-05T13:51:17,594                 On the other hand, currently there is no concept of package data
2024-06-05T13:51:17,594                 directory, all directories are treated like packages.
2024-06-05T13:51:17,595           ********************************************************************************

2024-06-05T13:51:17,596   !!
2024-06-05T13:51:17,597     check.warn(importable)
2024-06-05T13:51:17,600   /tmp/pip-build-env-cpcib7j5/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.fileformats.xtc.src' is absent from the `packages` configuration.
2024-06-05T13:51:17,602   !!

2024-06-05T13:51:17,605           ********************************************************************************
2024-06-05T13:51:17,609           ############################
2024-06-05T13:51:17,612           # Package would be ignored #
2024-06-05T13:51:17,613           ############################
2024-06-05T13:51:17,616           Python recognizes 'moleculekit.fileformats.xtc.src' as an importable package[^1],
2024-06-05T13:51:17,616           but it is absent from setuptools' `packages` configuration.

2024-06-05T13:51:17,618           This leads to an ambiguous overall configuration. If you want to distribute this
2024-06-05T13:51:17,619           package, please make sure that 'moleculekit.fileformats.xtc.src' is explicitly added
2024-06-05T13:51:17,620           to the `packages` configuration field.

2024-06-05T13:51:17,621           Alternatively, you can also rely on setuptools' discovery methods
2024-06-05T13:51:17,622           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-06-05T13:51:17,622           instead of `find_packages(...)`/`find:`).

2024-06-05T13:51:17,624           You can read more about "package discovery" on setuptools documentation page:

2024-06-05T13:51:17,625           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-06-05T13:51:17,627           If you don't want 'moleculekit.fileformats.xtc.src' to be distributed and are
2024-06-05T13:51:17,627           already explicitly excluding 'moleculekit.fileformats.xtc.src' via
2024-06-05T13:51:17,628           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-06-05T13:51:17,628           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-06-05T13:51:17,629           combination with a more fine grained `package-data` configuration.

2024-06-05T13:51:17,630           You can read more about "package data files" on setuptools documentation page:

2024-06-05T13:51:17,631           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-06-05T13:51:17,633           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-06-05T13:51:17,634                 even if it does not contain any `.py` files.
2024-06-05T13:51:17,634                 On the other hand, currently there is no concept of package data
2024-06-05T13:51:17,635                 directory, all directories are treated like packages.
2024-06-05T13:51:17,636           ********************************************************************************

2024-06-05T13:51:17,637   !!
2024-06-05T13:51:17,637     check.warn(importable)
2024-06-05T13:51:17,638   /tmp/pip-build-env-cpcib7j5/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.interactions.cationpi' is absent from the `packages` configuration.
2024-06-05T13:51:17,639   !!

2024-06-05T13:51:17,640           ********************************************************************************
2024-06-05T13:51:17,640           ############################
2024-06-05T13:51:17,641           # Package would be ignored #
2024-06-05T13:51:17,641           ############################
2024-06-05T13:51:17,642           Python recognizes 'moleculekit.interactions.cationpi' as an importable package[^1],
2024-06-05T13:51:17,643           but it is absent from setuptools' `packages` configuration.

2024-06-05T13:51:17,644           This leads to an ambiguous overall configuration. If you want to distribute this
2024-06-05T13:51:17,644           package, please make sure that 'moleculekit.interactions.cationpi' is explicitly added
2024-06-05T13:51:17,645           to the `packages` configuration field.

2024-06-05T13:51:17,646           Alternatively, you can also rely on setuptools' discovery methods
2024-06-05T13:51:17,646           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-06-05T13:51:17,647           instead of `find_packages(...)`/`find:`).

2024-06-05T13:51:17,648           You can read more about "package discovery" on setuptools documentation page:

2024-06-05T13:51:17,653           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-06-05T13:51:17,657           If you don't want 'moleculekit.interactions.cationpi' to be distributed and are
2024-06-05T13:51:17,657           already explicitly excluding 'moleculekit.interactions.cationpi' via
2024-06-05T13:51:17,658           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-06-05T13:51:17,658           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-06-05T13:51:17,659           combination with a more fine grained `package-data` configuration.

2024-06-05T13:51:17,660           You can read more about "package data files" on setuptools documentation page:

2024-06-05T13:51:17,661           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-06-05T13:51:17,663           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-06-05T13:51:17,664                 even if it does not contain any `.py` files.
2024-06-05T13:51:17,664                 On the other hand, currently there is no concept of package data
2024-06-05T13:51:17,665                 directory, all directories are treated like packages.
2024-06-05T13:51:17,666           ********************************************************************************

2024-06-05T13:51:17,667   !!
2024-06-05T13:51:17,667     check.warn(importable)
2024-06-05T13:51:17,668   /tmp/pip-build-env-cpcib7j5/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.interactions.hbonds' is absent from the `packages` configuration.
2024-06-05T13:51:17,669   !!

2024-06-05T13:51:17,680           ********************************************************************************
2024-06-05T13:51:17,681           ############################
2024-06-05T13:51:17,681           # Package would be ignored #
2024-06-05T13:51:17,682           ############################
2024-06-05T13:51:17,682           Python recognizes 'moleculekit.interactions.hbonds' as an importable package[^1],
2024-06-05T13:51:17,683           but it is absent from setuptools' `packages` configuration.

2024-06-05T13:51:17,684           This leads to an ambiguous overall configuration. If you want to distribute this
2024-06-05T13:51:17,684           package, please make sure that 'moleculekit.interactions.hbonds' is explicitly added
2024-06-05T13:51:17,685           to the `packages` configuration field.

2024-06-05T13:51:17,686           Alternatively, you can also rely on setuptools' discovery methods
2024-06-05T13:51:17,687           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-06-05T13:51:17,687           instead of `find_packages(...)`/`find:`).

2024-06-05T13:51:17,688           You can read more about "package discovery" on setuptools documentation page:

2024-06-05T13:51:17,689           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-06-05T13:51:17,690           If you don't want 'moleculekit.interactions.hbonds' to be distributed and are
2024-06-05T13:51:17,690           already explicitly excluding 'moleculekit.interactions.hbonds' via
2024-06-05T13:51:17,690           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-06-05T13:51:17,691           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-06-05T13:51:17,692           combination with a more fine grained `package-data` configuration.

2024-06-05T13:51:17,692           You can read more about "package data files" on setuptools documentation page:

2024-06-05T13:51:17,693           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-06-05T13:51:17,695           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-06-05T13:51:17,695                 even if it does not contain any `.py` files.
2024-06-05T13:51:17,696                 On the other hand, currently there is no concept of package data
2024-06-05T13:51:17,696                 directory, all directories are treated like packages.
2024-06-05T13:51:17,697           ********************************************************************************

2024-06-05T13:51:17,698   !!
2024-06-05T13:51:17,699     check.warn(importable)
2024-06-05T13:51:17,699   /tmp/pip-build-env-cpcib7j5/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.interactions.pipi' is absent from the `packages` configuration.
2024-06-05T13:51:17,700   !!

2024-06-05T13:51:17,701           ********************************************************************************
2024-06-05T13:51:17,702           ############################
2024-06-05T13:51:17,702           # Package would be ignored #
2024-06-05T13:51:17,703           ############################
2024-06-05T13:51:17,703           Python recognizes 'moleculekit.interactions.pipi' as an importable package[^1],
2024-06-05T13:51:17,704           but it is absent from setuptools' `packages` configuration.

2024-06-05T13:51:17,705           This leads to an ambiguous overall configuration. If you want to distribute this
2024-06-05T13:51:17,706           package, please make sure that 'moleculekit.interactions.pipi' is explicitly added
2024-06-05T13:51:17,707           to the `packages` configuration field.

2024-06-05T13:51:17,708           Alternatively, you can also rely on setuptools' discovery methods
2024-06-05T13:51:17,709           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-06-05T13:51:17,709           instead of `find_packages(...)`/`find:`).

2024-06-05T13:51:17,710           You can read more about "package discovery" on setuptools documentation page:

2024-06-05T13:51:17,711           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-06-05T13:51:17,713           If you don't want 'moleculekit.interactions.pipi' to be distributed and are
2024-06-05T13:51:17,713           already explicitly excluding 'moleculekit.interactions.pipi' via
2024-06-05T13:51:17,714           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-06-05T13:51:17,714           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-06-05T13:51:17,715           combination with a more fine grained `package-data` configuration.

2024-06-05T13:51:17,716           You can read more about "package data files" on setuptools documentation page:

2024-06-05T13:51:17,718           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-06-05T13:51:17,719           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-06-05T13:51:17,719                 even if it does not contain any `.py` files.
2024-06-05T13:51:17,720                 On the other hand, currently there is no concept of package data
2024-06-05T13:51:17,720                 directory, all directories are treated like packages.
2024-06-05T13:51:17,721           ********************************************************************************

2024-06-05T13:51:17,721   !!
2024-06-05T13:51:17,722     check.warn(importable)
2024-06-05T13:51:17,722   /tmp/pip-build-env-cpcib7j5/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.interactions.sigmahole' is absent from the `packages` configuration.
2024-06-05T13:51:17,723   !!

2024-06-05T13:51:17,724           ********************************************************************************
2024-06-05T13:51:17,724           ############################
2024-06-05T13:51:17,724           # Package would be ignored #
2024-06-05T13:51:17,725           ############################
2024-06-05T13:51:17,725           Python recognizes 'moleculekit.interactions.sigmahole' as an importable package[^1],
2024-06-05T13:51:17,726           but it is absent from setuptools' `packages` configuration.

2024-06-05T13:51:17,727           This leads to an ambiguous overall configuration. If you want to distribute this
2024-06-05T13:51:17,727           package, please make sure that 'moleculekit.interactions.sigmahole' is explicitly added
2024-06-05T13:51:17,728           to the `packages` configuration field.

2024-06-05T13:51:17,729           Alternatively, you can also rely on setuptools' discovery methods
2024-06-05T13:51:17,729           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-06-05T13:51:17,730           instead of `find_packages(...)`/`find:`).

2024-06-05T13:51:17,731           You can read more about "package discovery" on setuptools documentation page:

2024-06-05T13:51:17,733           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-06-05T13:51:17,734           If you don't want 'moleculekit.interactions.sigmahole' to be distributed and are
2024-06-05T13:51:17,735           already explicitly excluding 'moleculekit.interactions.sigmahole' via
2024-06-05T13:51:17,735           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-06-05T13:51:17,736           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-06-05T13:51:17,737           combination with a more fine grained `package-data` configuration.

2024-06-05T13:51:17,738           You can read more about "package data files" on setuptools documentation page:

2024-06-05T13:51:17,739           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-06-05T13:51:17,741           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-06-05T13:51:17,741                 even if it does not contain any `.py` files.
2024-06-05T13:51:17,742                 On the other hand, currently there is no concept of package data
2024-06-05T13:51:17,742                 directory, all directories are treated like packages.
2024-06-05T13:51:17,743           ********************************************************************************

2024-06-05T13:51:17,744   !!
2024-06-05T13:51:17,745     check.warn(importable)
2024-06-05T13:51:17,745   /tmp/pip-build-env-cpcib7j5/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.occupancy_utils' is absent from the `packages` configuration.
2024-06-05T13:51:17,746   !!

2024-06-05T13:51:17,747           ********************************************************************************
2024-06-05T13:51:17,748           ############################
2024-06-05T13:51:17,749           # Package would be ignored #
2024-06-05T13:51:17,749           ############################
2024-06-05T13:51:17,750           Python recognizes 'moleculekit.occupancy_utils' as an importable package[^1],
2024-06-05T13:51:17,750           but it is absent from setuptools' `packages` configuration.

2024-06-05T13:51:17,751           This leads to an ambiguous overall configuration. If you want to distribute this
2024-06-05T13:51:17,751           package, please make sure that 'moleculekit.occupancy_utils' is explicitly added
2024-06-05T13:51:17,752           to the `packages` configuration field.

2024-06-05T13:51:17,753           Alternatively, you can also rely on setuptools' discovery methods
2024-06-05T13:51:17,753           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-06-05T13:51:17,754           instead of `find_packages(...)`/`find:`).

2024-06-05T13:51:17,754           You can read more about "package discovery" on setuptools documentation page:

2024-06-05T13:51:17,755           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-06-05T13:51:17,756           If you don't want 'moleculekit.occupancy_utils' to be distributed and are
2024-06-05T13:51:17,756           already explicitly excluding 'moleculekit.occupancy_utils' via
2024-06-05T13:51:17,757           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-06-05T13:51:17,757           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-06-05T13:51:17,758           combination with a more fine grained `package-data` configuration.

2024-06-05T13:51:17,759           You can read more about "package data files" on setuptools documentation page:

2024-06-05T13:51:17,760           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-06-05T13:51:17,762           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-06-05T13:51:17,762                 even if it does not contain any `.py` files.
2024-06-05T13:51:17,763                 On the other hand, currently there is no concept of package data
2024-06-05T13:51:17,784                 directory, all directories are treated like packages.
2024-06-05T13:51:17,794           ********************************************************************************

2024-06-05T13:51:17,833   !!
2024-06-05T13:51:17,855     check.warn(importable)
2024-06-05T13:51:17,879   /tmp/pip-build-env-cpcib7j5/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.share' is absent from the `packages` configuration.
2024-06-05T13:51:17,902   !!

2024-06-05T13:51:17,905           ********************************************************************************
2024-06-05T13:51:17,905           ############################
2024-06-05T13:51:17,906           # Package would be ignored #
2024-06-05T13:51:17,907           ############################
2024-06-05T13:51:17,907           Python recognizes 'moleculekit.share' as an importable package[^1],
2024-06-05T13:51:17,908           but it is absent from setuptools' `packages` configuration.

2024-06-05T13:51:17,909           This leads to an ambiguous overall configuration. If you want to distribute this
2024-06-05T13:51:17,910           package, please make sure that 'moleculekit.share' is explicitly added
2024-06-05T13:51:17,910           to the `packages` configuration field.

2024-06-05T13:51:17,911           Alternatively, you can also rely on setuptools' discovery methods
2024-06-05T13:51:17,912           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-06-05T13:51:17,913           instead of `find_packages(...)`/`find:`).

2024-06-05T13:51:17,914           You can read more about "package discovery" on setuptools documentation page:

2024-06-05T13:51:17,915           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-06-05T13:51:17,916           If you don't want 'moleculekit.share' to be distributed and are
2024-06-05T13:51:17,917           already explicitly excluding 'moleculekit.share' via
2024-06-05T13:51:17,918           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-06-05T13:51:17,918           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-06-05T13:51:17,919           combination with a more fine grained `package-data` configuration.

2024-06-05T13:51:17,920           You can read more about "package data files" on setuptools documentation page:

2024-06-05T13:51:17,921           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-06-05T13:51:17,923           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-06-05T13:51:17,924                 even if it does not contain any `.py` files.
2024-06-05T13:51:17,924                 On the other hand, currently there is no concept of package data
2024-06-05T13:51:17,925                 directory, all directories are treated like packages.
2024-06-05T13:51:17,925           ********************************************************************************

2024-06-05T13:51:17,927   !!
2024-06-05T13:51:17,927     check.warn(importable)
2024-06-05T13:51:17,928   /tmp/pip-build-env-cpcib7j5/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.share.atomselect' is absent from the `packages` configuration.
2024-06-05T13:51:17,928   !!

2024-06-05T13:51:17,930           ********************************************************************************
2024-06-05T13:51:17,930           ############################
2024-06-05T13:51:17,931           # Package would be ignored #
2024-06-05T13:51:17,931           ############################
2024-06-05T13:51:17,932           Python recognizes 'moleculekit.share.atomselect' as an importable package[^1],
2024-06-05T13:51:17,933           but it is absent from setuptools' `packages` configuration.

2024-06-05T13:51:17,934           This leads to an ambiguous overall configuration. If you want to distribute this
2024-06-05T13:51:17,935           package, please make sure that 'moleculekit.share.atomselect' is explicitly added
2024-06-05T13:51:17,935           to the `packages` configuration field.

2024-06-05T13:51:17,937           Alternatively, you can also rely on setuptools' discovery methods
2024-06-05T13:51:17,937           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-06-05T13:51:17,938           instead of `find_packages(...)`/`find:`).

2024-06-05T13:51:17,940           You can read more about "package discovery" on setuptools documentation page:

2024-06-05T13:51:17,941           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-06-05T13:51:17,942           If you don't want 'moleculekit.share.atomselect' to be distributed and are
2024-06-05T13:51:17,943           already explicitly excluding 'moleculekit.share.atomselect' via
2024-06-05T13:51:17,944           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-06-05T13:51:17,944           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-06-05T13:51:17,945           combination with a more fine grained `package-data` configuration.

2024-06-05T13:51:17,947           You can read more about "package data files" on setuptools documentation page:

2024-06-05T13:51:17,948           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-06-05T13:51:17,950           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-06-05T13:51:17,951                 even if it does not contain any `.py` files.
2024-06-05T13:51:17,951                 On the other hand, currently there is no concept of package data
2024-06-05T13:51:17,952                 directory, all directories are treated like packages.
2024-06-05T13:51:17,953           ********************************************************************************

2024-06-05T13:51:17,954   !!
2024-06-05T13:51:17,954     check.warn(importable)
2024-06-05T13:51:17,956   /tmp/pip-build-env-cpcib7j5/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.share.pdb2pqr.residues' is absent from the `packages` configuration.
2024-06-05T13:51:17,956   !!

2024-06-05T13:51:17,957           ********************************************************************************
2024-06-05T13:51:17,958           ############################
2024-06-05T13:51:17,958           # Package would be ignored #
2024-06-05T13:51:17,960           ############################
2024-06-05T13:51:17,960           Python recognizes 'moleculekit.share.pdb2pqr.residues' as an importable package[^1],
2024-06-05T13:51:17,961           but it is absent from setuptools' `packages` configuration.

2024-06-05T13:51:17,962           This leads to an ambiguous overall configuration. If you want to distribute this
2024-06-05T13:51:17,963           package, please make sure that 'moleculekit.share.pdb2pqr.residues' is explicitly added
2024-06-05T13:51:17,963           to the `packages` configuration field.

2024-06-05T13:51:17,964           Alternatively, you can also rely on setuptools' discovery methods
2024-06-05T13:51:17,965           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-06-05T13:51:17,966           instead of `find_packages(...)`/`find:`).

2024-06-05T13:51:17,967           You can read more about "package discovery" on setuptools documentation page:

2024-06-05T13:51:17,968           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-06-05T13:51:17,970           If you don't want 'moleculekit.share.pdb2pqr.residues' to be distributed and are
2024-06-05T13:51:17,970           already explicitly excluding 'moleculekit.share.pdb2pqr.residues' via
2024-06-05T13:51:17,971           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-06-05T13:51:17,972           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-06-05T13:51:17,972           combination with a more fine grained `package-data` configuration.

2024-06-05T13:51:17,974           You can read more about "package data files" on setuptools documentation page:

2024-06-05T13:51:17,975           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-06-05T13:51:17,977           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-06-05T13:51:17,977                 even if it does not contain any `.py` files.
2024-06-05T13:51:17,978                 On the other hand, currently there is no concept of package data
2024-06-05T13:51:17,979                 directory, all directories are treated like packages.
2024-06-05T13:51:17,979           ********************************************************************************

2024-06-05T13:51:17,981   !!
2024-06-05T13:51:17,981     check.warn(importable)
2024-06-05T13:51:17,982   /tmp/pip-build-env-cpcib7j5/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.tmalign' is absent from the `packages` configuration.
2024-06-05T13:51:17,982   !!

2024-06-05T13:51:17,984           ********************************************************************************
2024-06-05T13:51:17,984           ############################
2024-06-05T13:51:17,985           # Package would be ignored #
2024-06-05T13:51:17,986           ############################
2024-06-05T13:51:17,987           Python recognizes 'moleculekit.tmalign' as an importable package[^1],
2024-06-05T13:51:17,987           but it is absent from setuptools' `packages` configuration.

2024-06-05T13:51:17,989           This leads to an ambiguous overall configuration. If you want to distribute this
2024-06-05T13:51:17,989           package, please make sure that 'moleculekit.tmalign' is explicitly added
2024-06-05T13:51:17,990           to the `packages` configuration field.

2024-06-05T13:51:17,991           Alternatively, you can also rely on setuptools' discovery methods
2024-06-05T13:51:17,992           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-06-05T13:51:17,993           instead of `find_packages(...)`/`find:`).

2024-06-05T13:51:17,994           You can read more about "package discovery" on setuptools documentation page:

2024-06-05T13:51:17,995           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-06-05T13:51:17,996           If you don't want 'moleculekit.tmalign' to be distributed and are
2024-06-05T13:51:17,997           already explicitly excluding 'moleculekit.tmalign' via
2024-06-05T13:51:17,998           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-06-05T13:51:17,998           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-06-05T13:51:17,999           combination with a more fine grained `package-data` configuration.

2024-06-05T13:51:18,000           You can read more about "package data files" on setuptools documentation page:

2024-06-05T13:51:18,001           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-06-05T13:51:18,003           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-06-05T13:51:18,004                 even if it does not contain any `.py` files.
2024-06-05T13:51:18,005                 On the other hand, currently there is no concept of package data
2024-06-05T13:51:18,005                 directory, all directories are treated like packages.
2024-06-05T13:51:18,006           ********************************************************************************

2024-06-05T13:51:18,007   !!
2024-06-05T13:51:18,008     check.warn(importable)
2024-06-05T13:51:18,008   /tmp/pip-build-env-cpcib7j5/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.tmalign.include' is absent from the `packages` configuration.
2024-06-05T13:51:18,009   !!

2024-06-05T13:51:18,010           ********************************************************************************
2024-06-05T13:51:18,011           ############################
2024-06-05T13:51:18,011           # Package would be ignored #
2024-06-05T13:51:18,012           ############################
2024-06-05T13:51:18,013           Python recognizes 'moleculekit.tmalign.include' as an importable package[^1],
2024-06-05T13:51:18,014           but it is absent from setuptools' `packages` configuration.

2024-06-05T13:51:18,015           This leads to an ambiguous overall configuration. If you want to distribute this
2024-06-05T13:51:18,015           package, please make sure that 'moleculekit.tmalign.include' is explicitly added
2024-06-05T13:51:18,016           to the `packages` configuration field.

2024-06-05T13:51:18,017           Alternatively, you can also rely on setuptools' discovery methods
2024-06-05T13:51:18,018           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-06-05T13:51:18,019           instead of `find_packages(...)`/`find:`).

2024-06-05T13:51:18,020           You can read more about "package discovery" on setuptools documentation page:

2024-06-05T13:51:18,021           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-06-05T13:51:18,022           If you don't want 'moleculekit.tmalign.include' to be distributed and are
2024-06-05T13:51:18,023           already explicitly excluding 'moleculekit.tmalign.include' via
2024-06-05T13:51:18,024           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-06-05T13:51:18,025           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-06-05T13:51:18,025           combination with a more fine grained `package-data` configuration.

2024-06-05T13:51:18,027           You can read more about "package data files" on setuptools documentation page:

2024-06-05T13:51:18,028           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-06-05T13:51:18,030           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-06-05T13:51:18,031                 even if it does not contain any `.py` files.
2024-06-05T13:51:18,032                 On the other hand, currently there is no concept of package data
2024-06-05T13:51:18,033                 directory, all directories are treated like packages.
2024-06-05T13:51:18,033           ********************************************************************************

2024-06-05T13:51:18,035   !!
2024-06-05T13:51:18,035     check.warn(importable)
2024-06-05T13:51:18,036   /tmp/pip-build-env-cpcib7j5/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.tmalign.src' is absent from the `packages` configuration.
2024-06-05T13:51:18,036   !!

2024-06-05T13:51:18,038           ********************************************************************************
2024-06-05T13:51:18,039           ############################
2024-06-05T13:51:18,039           # Package would be ignored #
2024-06-05T13:51:18,040           ############################
2024-06-05T13:51:18,040           Python recognizes 'moleculekit.tmalign.src' as an importable package[^1],
2024-06-05T13:51:18,041           but it is absent from setuptools' `packages` configuration.

2024-06-05T13:51:18,042           This leads to an ambiguous overall configuration. If you want to distribute this
2024-06-05T13:51:18,042           package, please make sure that 'moleculekit.tmalign.src' is explicitly added
2024-06-05T13:51:18,043           to the `packages` configuration field.

2024-06-05T13:51:18,044           Alternatively, you can also rely on setuptools' discovery methods
2024-06-05T13:51:18,045           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-06-05T13:51:18,046           instead of `find_packages(...)`/`find:`).

2024-06-05T13:51:18,047           You can read more about "package discovery" on setuptools documentation page:

2024-06-05T13:51:18,048           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-06-05T13:51:18,050           If you don't want 'moleculekit.tmalign.src' to be distributed and are
2024-06-05T13:51:18,051           already explicitly excluding 'moleculekit.tmalign.src' via
2024-06-05T13:51:18,051           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-06-05T13:51:18,052           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-06-05T13:51:18,053           combination with a more fine grained `package-data` configuration.

2024-06-05T13:51:18,054           You can read more about "package data files" on setuptools documentation page:

2024-06-05T13:51:18,056           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-06-05T13:51:18,057           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-06-05T13:51:18,058                 even if it does not contain any `.py` files.
2024-06-05T13:51:18,059                 On the other hand, currently there is no concept of package data
2024-06-05T13:51:18,060                 directory, all directories are treated like packages.
2024-06-05T13:51:18,060           ********************************************************************************

2024-06-05T13:51:18,062   !!
2024-06-05T13:51:18,062     check.warn(importable)
2024-06-05T13:51:18,063   /tmp/pip-build-env-cpcib7j5/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.wrapping' is absent from the `packages` configuration.
2024-06-05T13:51:18,064   !!

2024-06-05T13:51:18,065           ********************************************************************************
2024-06-05T13:51:18,066           ############################
2024-06-05T13:51:18,067           # Package would be ignored #
2024-06-05T13:51:18,067           ############################
2024-06-05T13:51:18,068           Python recognizes 'moleculekit.wrapping' as an importable package[^1],
2024-06-05T13:51:18,069           but it is absent from setuptools' `packages` configuration.

2024-06-05T13:51:18,070           This leads to an ambiguous overall configuration. If you want to distribute this
2024-06-05T13:51:18,071           package, please make sure that 'moleculekit.wrapping' is explicitly added
2024-06-05T13:51:18,072           to the `packages` configuration field.

2024-06-05T13:51:18,073           Alternatively, you can also rely on setuptools' discovery methods
2024-06-05T13:51:18,074           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-06-05T13:51:18,074           instead of `find_packages(...)`/`find:`).

2024-06-05T13:51:18,075           You can read more about "package discovery" on setuptools documentation page:

2024-06-05T13:51:18,077           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-06-05T13:51:18,078           If you don't want 'moleculekit.wrapping' to be distributed and are
2024-06-05T13:51:18,079           already explicitly excluding 'moleculekit.wrapping' via
2024-06-05T13:51:18,079           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-06-05T13:51:18,080           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-06-05T13:51:18,081           combination with a more fine grained `package-data` configuration.

2024-06-05T13:51:18,082           You can read more about "package data files" on setuptools documentation page:

2024-06-05T13:51:18,083           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-06-05T13:51:18,085           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-06-05T13:51:18,086                 even if it does not contain any `.py` files.
2024-06-05T13:51:18,087                 On the other hand, currently there is no concept of package data
2024-06-05T13:51:18,087                 directory, all directories are treated like packages.
2024-06-05T13:51:18,088           ********************************************************************************

2024-06-05T13:51:18,089   !!
2024-06-05T13:51:18,090     check.warn(importable)
2024-06-05T13:51:18,090   copying moleculekit/logging.ini -> build/lib.linux-armv7l-cpython-311/moleculekit
2024-06-05T13:51:18,091   copying moleculekit/vmd_wrapper -> build/lib.linux-armv7l-cpython-311/moleculekit
2024-06-05T13:51:18,092   creating build/lib.linux-armv7l-cpython-311/moleculekit/atomselect_utils
2024-06-05T13:51:18,092   copying moleculekit/atomselect_utils/atomselect_utils.cpp -> build/lib.linux-armv7l-cpython-311/moleculekit/atomselect_utils
2024-06-05T13:51:18,093   copying moleculekit/atomselect_utils/atomselect_utils.pyx -> build/lib.linux-armv7l-cpython-311/moleculekit/atomselect_utils
2024-06-05T13:51:18,094   creating build/lib.linux-armv7l-cpython-311/moleculekit/bondguesser_utils
2024-06-05T13:51:18,095   copying moleculekit/bondguesser_utils/bondguesser_utils.cpp -> build/lib.linux-armv7l-cpython-311/moleculekit/bondguesser_utils
2024-06-05T13:51:18,095   copying moleculekit/bondguesser_utils/bondguesser_utils.pyx -> build/lib.linux-armv7l-cpython-311/moleculekit/bondguesser_utils
2024-06-05T13:51:18,096   creating build/lib.linux-armv7l-cpython-311/moleculekit/cython_utils
2024-06-05T13:51:18,097   copying moleculekit/cython_utils/cython_utils.cpp -> build/lib.linux-armv7l-cpython-311/moleculekit/cython_utils
2024-06-05T13:51:18,097   copying moleculekit/cython_utils/cython_utils.pyx -> build/lib.linux-armv7l-cpython-311/moleculekit/cython_utils
2024-06-05T13:51:18,098   creating build/lib.linux-armv7l-cpython-311/moleculekit/distance_utils
2024-06-05T13:51:18,099   copying moleculekit/distance_utils/distance_utils.cpp -> build/lib.linux-armv7l-cpython-311/moleculekit/distance_utils
2024-06-05T13:51:18,099   copying moleculekit/distance_utils/distance_utils.pyx -> build/lib.linux-armv7l-cpython-311/moleculekit/distance_utils
2024-06-05T13:51:18,100   creating build/lib.linux-armv7l-cpython-311/moleculekit/occupancy_utils
2024-06-05T13:51:18,101   copying moleculekit/occupancy_utils/occupancy_utils.cpp -> build/lib.linux-armv7l-cpython-311/moleculekit/occupancy_utils
2024-06-05T13:51:18,102   copying moleculekit/occupancy_utils/occupancy_utils.pyx -> build/lib.linux-armv7l-cpython-311/moleculekit/occupancy_utils
2024-06-05T13:51:18,102   creating build/lib.linux-armv7l-cpython-311/moleculekit/share
2024-06-05T13:51:18,103   copying moleculekit/share/ALA.cif -> build/lib.linux-armv7l-cpython-311/moleculekit/share
2024-06-05T13:51:18,103   copying moleculekit/share/backbone.cif -> build/lib.linux-armv7l-cpython-311/moleculekit/share
2024-06-05T13:51:18,104   copying moleculekit/share/opm_sequences.json -> build/lib.linux-armv7l-cpython-311/moleculekit/share
2024-06-05T13:51:18,105   creating build/lib.linux-armv7l-cpython-311/moleculekit/share/atomselect
2024-06-05T13:51:18,105   copying moleculekit/share/atomselect/atomselect.json -> build/lib.linux-armv7l-cpython-311/moleculekit/share/atomselect
2024-06-05T13:51:18,106   creating build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr
2024-06-05T13:51:18,106   creating build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-06-05T13:51:18,107   copying moleculekit/share/pdb2pqr/residues/.gitkeep -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-06-05T13:51:18,108   copying moleculekit/share/pdb2pqr/residues/004.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-06-05T13:51:18,108   copying moleculekit/share/pdb2pqr/residues/004.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-06-05T13:51:18,109   copying moleculekit/share/pdb2pqr/residues/03Y.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-06-05T13:51:18,110   copying moleculekit/share/pdb2pqr/residues/03Y.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-06-05T13:51:18,110   copying moleculekit/share/pdb2pqr/residues/0A1.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-06-05T13:51:18,111   copying moleculekit/share/pdb2pqr/residues/0A1.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-06-05T13:51:18,112   copying moleculekit/share/pdb2pqr/residues/0AF.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-06-05T13:51:18,112   copying moleculekit/share/pdb2pqr/residues/0AF.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-06-05T13:51:18,113   copying moleculekit/share/pdb2pqr/residues/0BN.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-06-05T13:51:18,113   copying moleculekit/share/pdb2pqr/residues/0BN.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-06-05T13:51:18,114   copying moleculekit/share/pdb2pqr/residues/1MH.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-06-05T13:51:18,115   copying moleculekit/share/pdb2pqr/residues/1MH.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-06-05T13:51:18,116   copying moleculekit/share/pdb2pqr/residues/2AS.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-06-05T13:51:18,116   copying moleculekit/share/pdb2pqr/residues/2AS.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-06-05T13:51:18,117   copying moleculekit/share/pdb2pqr/residues/2GX.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-06-05T13:51:18,118   copying moleculekit/share/pdb2pqr/residues/2GX.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-06-05T13:51:18,118   copying moleculekit/share/pdb2pqr/residues/2ML.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-06-05T13:51:18,119   copying moleculekit/share/pdb2pqr/residues/2ML.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-06-05T13:51:18,120   copying moleculekit/share/pdb2pqr/residues/2MR.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-06-05T13:51:18,121   copying moleculekit/share/pdb2pqr/residues/2MR.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-06-05T13:51:18,122   copying moleculekit/share/pdb2pqr/residues/4IN.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-06-05T13:51:18,123   copying moleculekit/share/pdb2pqr/residues/4IN.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-06-05T13:51:18,125   copying moleculekit/share/pdb2pqr/residues/4PH.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-06-05T13:51:18,125   copying moleculekit/share/pdb2pqr/residues/4PH.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-06-05T13:51:18,126   copying moleculekit/share/pdb2pqr/residues/4PQ.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-06-05T13:51:18,127   copying moleculekit/share/pdb2pqr/residues/4PQ.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-06-05T13:51:18,128   copying moleculekit/share/pdb2pqr/residues/5JP.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-06-05T13:51:18,129   copying moleculekit/share/pdb2pqr/residues/5JP.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-06-05T13:51:18,129   copying moleculekit/share/pdb2pqr/residues/AA4.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-06-05T13:51:18,130   copying moleculekit/share/pdb2pqr/residues/AA4.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-06-05T13:51:18,132   copying moleculekit/share/pdb2pqr/residues/ABA.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-06-05T13:51:18,132   copying moleculekit/share/pdb2pqr/residues/ABA.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-06-05T13:51:18,133   copying moleculekit/share/pdb2pqr/residues/AHP.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-06-05T13:51:18,133   copying moleculekit/share/pdb2pqr/residues/AHP.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-06-05T13:51:18,134   copying moleculekit/share/pdb2pqr/residues/ALC.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-06-05T13:51:18,134   copying moleculekit/share/pdb2pqr/residues/ALC.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-06-05T13:51:18,135   copying moleculekit/share/pdb2pqr/residues/ALN.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-06-05T13:51:18,136   copying moleculekit/share/pdb2pqr/residues/ALN.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-06-05T13:51:18,137   copying moleculekit/share/pdb2pqr/residues/ALY.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-06-05T13:51:18,137   copying moleculekit/share/pdb2pqr/residues/ALY.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-06-05T13:51:18,138   copying moleculekit/share/pdb2pqr/residues/APD.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-06-05T13:51:18,139   copying moleculekit/share/pdb2pqr/residues/APD.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-06-05T13:51:18,140   copying moleculekit/share/pdb2pqr/residues/BB8.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-06-05T13:51:18,140   copying moleculekit/share/pdb2pqr/residues/BB8.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-06-05T13:51:18,141   copying moleculekit/share/pdb2pqr/residues/BCS.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-06-05T13:51:18,142   copying moleculekit/share/pdb2pqr/residues/BCS.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-06-05T13:51:18,142   copying moleculekit/share/pdb2pqr/residues/BTK.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-06-05T13:51:18,143   copying moleculekit/share/pdb2pqr/residues/BTK.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-06-05T13:51:18,144   copying moleculekit/share/pdb2pqr/residues/CCS.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-06-05T13:51:18,145   copying moleculekit/share/pdb2pqr/residues/CCS.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-06-05T13:51:18,146   copying moleculekit/share/pdb2pqr/residues/CGU.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-06-05T13:51:18,147   copying moleculekit/share/pdb2pqr/residues/CGU.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-06-05T13:51:18,148   copying moleculekit/share/pdb2pqr/residues/CSA.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-06-05T13:51:18,149   copying moleculekit/share/pdb2pqr/residues/CSA.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-06-05T13:51:18,150   copying moleculekit/share/pdb2pqr/residues/CSO.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-06-05T13:51:18,150   copying moleculekit/share/pdb2pqr/residues/CSO.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-06-05T13:51:18,151   copying moleculekit/share/pdb2pqr/residues/CSP.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-06-05T13:51:18,152   copying moleculekit/share/pdb2pqr/residues/CSP.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-06-05T13:51:18,152   copying moleculekit/share/pdb2pqr/residues/CSS.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-06-05T13:51:18,153   copying moleculekit/share/pdb2pqr/residues/CSS.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-06-05T13:51:18,154   copying moleculekit/share/pdb2pqr/residues/D4P.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-06-05T13:51:18,154   copying moleculekit/share/pdb2pqr/residues/D4P.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-06-05T13:51:18,155   copying moleculekit/share/pdb2pqr/residues/DA2.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-06-05T13:51:18,156   copying moleculekit/share/pdb2pqr/residues/DA2.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-06-05T13:51:18,156   copying moleculekit/share/pdb2pqr/residues/DAB.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-06-05T13:51:18,157   copying moleculekit/share/pdb2pqr/residues/DAB.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-06-05T13:51:18,158   copying moleculekit/share/pdb2pqr/residues/DAH.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-06-05T13:51:18,159   copying moleculekit/share/pdb2pqr/residues/DAH.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-06-05T13:51:18,159   copying moleculekit/share/pdb2pqr/residues/DPP.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-06-05T13:51:18,160   copying moleculekit/share/pdb2pqr/residues/DPP.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-06-05T13:51:18,160   copying moleculekit/share/pdb2pqr/residues/ESC.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-06-05T13:51:18,161   copying moleculekit/share/pdb2pqr/residues/ESC.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-06-05T13:51:18,162   copying moleculekit/share/pdb2pqr/residues/FGL.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-06-05T13:51:18,163   copying moleculekit/share/pdb2pqr/residues/FGL.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-06-05T13:51:18,164   copying moleculekit/share/pdb2pqr/residues/GHG.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-06-05T13:51:18,164   copying moleculekit/share/pdb2pqr/residues/GHG.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-06-05T13:51:18,165   copying moleculekit/share/pdb2pqr/residues/GME.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-06-05T13:51:18,166   copying moleculekit/share/pdb2pqr/residues/GME.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-06-05T13:51:18,166   copying moleculekit/share/pdb2pqr/residues/GNC.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-06-05T13:51:18,167   copying moleculekit/share/pdb2pqr/residues/GNC.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-06-05T13:51:18,168   copying moleculekit/share/pdb2pqr/residues/HHK.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-06-05T13:51:18,169   copying moleculekit/share/pdb2pqr/residues/HHK.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-06-05T13:51:18,169   copying moleculekit/share/pdb2pqr/residues/HLU.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-06-05T13:51:18,170   copying moleculekit/share/pdb2pqr/residues/HLU.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-06-05T13:51:18,171   copying moleculekit/share/pdb2pqr/residues/HLX.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-06-05T13:51:18,171   copying moleculekit/share/pdb2pqr/residues/HLX.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-06-05T13:51:18,172   copying moleculekit/share/pdb2pqr/residues/HOX.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-06-05T13:51:18,172   copying moleculekit/share/pdb2pqr/residues/HOX.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-06-05T13:51:18,173   copying moleculekit/share/pdb2pqr/residues/HPE.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-06-05T13:51:18,174   copying moleculekit/share/pdb2pqr/residues/HPE.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-06-05T13:51:18,175   copying moleculekit/share/pdb2pqr/residues/HQA.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-06-05T13:51:18,175   copying moleculekit/share/pdb2pqr/residues/HQA.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-06-05T13:51:18,176   copying moleculekit/share/pdb2pqr/residues/HTR.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-06-05T13:51:18,177   copying moleculekit/share/pdb2pqr/residues/HTR.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-06-05T13:51:18,177   copying moleculekit/share/pdb2pqr/residues/HYP.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-06-05T13:51:18,178   copying moleculekit/share/pdb2pqr/residues/HYP.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-06-05T13:51:18,180   copying moleculekit/share/pdb2pqr/residues/I2M.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-06-05T13:51:18,183   copying moleculekit/share/pdb2pqr/residues/I2M.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-06-05T13:51:18,185   copying moleculekit/share/pdb2pqr/residues/IGL.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-06-05T13:51:18,187   copying moleculekit/share/pdb2pqr/residues/IGL.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-06-05T13:51:18,189   copying moleculekit/share/pdb2pqr/residues/IIL.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-06-05T13:51:18,191   copying moleculekit/share/pdb2pqr/residues/IIL.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-06-05T13:51:18,194   copying moleculekit/share/pdb2pqr/residues/IML.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-06-05T13:51:18,196   copying moleculekit/share/pdb2pqr/residues/IML.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-06-05T13:51:18,198   copying moleculekit/share/pdb2pqr/residues/KYN.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-06-05T13:51:18,201   copying moleculekit/share/pdb2pqr/residues/KYN.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-06-05T13:51:18,203   copying moleculekit/share/pdb2pqr/residues/LME.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-06-05T13:51:18,205   copying moleculekit/share/pdb2pqr/residues/LME.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-06-05T13:51:18,207   copying moleculekit/share/pdb2pqr/residues/LMQ.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-06-05T13:51:18,209   copying moleculekit/share/pdb2pqr/residues/LMQ.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-06-05T13:51:18,212   copying moleculekit/share/pdb2pqr/residues/LYZ.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-06-05T13:51:18,214   copying moleculekit/share/pdb2pqr/residues/LYZ.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-06-05T13:51:18,216   copying moleculekit/share/pdb2pqr/residues/M3L.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-06-05T13:51:18,218   copying moleculekit/share/pdb2pqr/residues/M3L.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-06-05T13:51:18,221   copying moleculekit/share/pdb2pqr/residues/ME0.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-06-05T13:51:18,223   copying moleculekit/share/pdb2pqr/residues/ME0.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-06-05T13:51:18,226   copying moleculekit/share/pdb2pqr/residues/MEA.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-06-05T13:51:18,228   copying moleculekit/share/pdb2pqr/residues/MEA.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-06-05T13:51:18,230   copying moleculekit/share/pdb2pqr/residues/MEN.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-06-05T13:51:18,233   copying moleculekit/share/pdb2pqr/residues/MEN.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-06-05T13:51:18,235   copying moleculekit/share/pdb2pqr/residues/MEQ.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-06-05T13:51:18,237   copying moleculekit/share/pdb2pqr/residues/MEQ.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-06-05T13:51:18,240   copying moleculekit/share/pdb2pqr/residues/MLE.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-06-05T13:51:18,242   copying moleculekit/share/pdb2pqr/residues/MLE.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-06-05T13:51:18,244   copying moleculekit/share/pdb2pqr/residues/MLY.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-06-05T13:51:18,246   copying moleculekit/share/pdb2pqr/residues/MLY.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-06-05T13:51:18,249   copying moleculekit/share/pdb2pqr/residues/MLZ.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-06-05T13:51:18,252   copying moleculekit/share/pdb2pqr/residues/MLZ.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-06-05T13:51:18,254   copying moleculekit/share/pdb2pqr/residues/MME.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-06-05T13:51:18,256   copying moleculekit/share/pdb2pqr/residues/MME.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-06-05T13:51:18,259   copying moleculekit/share/pdb2pqr/residues/MMO.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-06-05T13:51:18,261   copying moleculekit/share/pdb2pqr/residues/MMO.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-06-05T13:51:18,263   copying moleculekit/share/pdb2pqr/residues/MVA.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-06-05T13:51:18,265   copying moleculekit/share/pdb2pqr/residues/MVA.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-06-05T13:51:18,268   copying moleculekit/share/pdb2pqr/residues/NAL.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-06-05T13:51:18,270   copying moleculekit/share/pdb2pqr/residues/NAL.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-06-05T13:51:18,272   copying moleculekit/share/pdb2pqr/residues/NCY.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-06-05T13:51:18,275   copying moleculekit/share/pdb2pqr/residues/NCY.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-06-05T13:51:18,277   copying moleculekit/share/pdb2pqr/residues/NLE.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-06-05T13:51:18,279   copying moleculekit/share/pdb2pqr/residues/NLE.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-06-05T13:51:18,281   copying moleculekit/share/pdb2pqr/residues/NVA.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-06-05T13:51:18,284   copying moleculekit/share/pdb2pqr/residues/NVA.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-06-05T13:51:18,286   copying moleculekit/share/pdb2pqr/residues/NZC.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-06-05T13:51:18,288   copying moleculekit/share/pdb2pqr/residues/NZC.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-06-05T13:51:18,291   copying moleculekit/share/pdb2pqr/residues/OCY.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-06-05T13:51:18,293   copying moleculekit/share/pdb2pqr/residues/OCY.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-06-05T13:51:18,296   copying moleculekit/share/pdb2pqr/residues/OMX.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-06-05T13:51:18,298   copying moleculekit/share/pdb2pqr/residues/OMX.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-06-05T13:51:18,300   copying moleculekit/share/pdb2pqr/residues/ONL.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-06-05T13:51:18,303   copying moleculekit/share/pdb2pqr/residues/ONL.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-06-05T13:51:18,305   copying moleculekit/share/pdb2pqr/residues/ORM.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-06-05T13:51:18,307   copying moleculekit/share/pdb2pqr/residues/ORM.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-06-05T13:51:18,309   copying moleculekit/share/pdb2pqr/residues/P1L.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-06-05T13:51:18,312   copying moleculekit/share/pdb2pqr/residues/P1L.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-06-05T13:51:18,314   copying moleculekit/share/pdb2pqr/residues/PCA.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-06-05T13:51:18,317   copying moleculekit/share/pdb2pqr/residues/PCA.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-06-05T13:51:18,319   copying moleculekit/share/pdb2pqr/residues/PRK.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-06-05T13:51:18,321   copying moleculekit/share/pdb2pqr/residues/PRK.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-06-05T13:51:18,324   copying moleculekit/share/pdb2pqr/residues/PTR.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-06-05T13:51:18,326   copying moleculekit/share/pdb2pqr/residues/PTR.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-06-05T13:51:18,329   copying moleculekit/share/pdb2pqr/residues/SEP.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-06-05T13:51:18,331   copying moleculekit/share/pdb2pqr/residues/SEP.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-06-05T13:51:18,333   copying moleculekit/share/pdb2pqr/residues/TPO.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-06-05T13:51:18,336   copying moleculekit/share/pdb2pqr/residues/TPO.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-06-05T13:51:18,338   copying moleculekit/share/pdb2pqr/residues/TRO.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-06-05T13:51:18,340   copying moleculekit/share/pdb2pqr/residues/TRO.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-06-05T13:51:18,342   copying moleculekit/share/pdb2pqr/residues/TY2.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-06-05T13:51:18,345   copying moleculekit/share/pdb2pqr/residues/TY2.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-06-05T13:51:18,347   copying moleculekit/share/pdb2pqr/residues/TYQ.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-06-05T13:51:18,349   copying moleculekit/share/pdb2pqr/residues/TYQ.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-06-05T13:51:18,352   copying moleculekit/share/pdb2pqr/residues/YCM.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-06-05T13:51:18,354   copying moleculekit/share/pdb2pqr/residues/YCM.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-06-05T13:51:18,356   copying moleculekit/share/pdb2pqr/residues/YNM.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-06-05T13:51:18,359   copying moleculekit/share/pdb2pqr/residues/YNM.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-06-05T13:51:18,361   creating build/lib.linux-armv7l-cpython-311/moleculekit/tmalign
2024-06-05T13:51:18,362   copying moleculekit/tmalign/tmalign_util.cpp -> build/lib.linux-armv7l-cpython-311/moleculekit/tmalign
2024-06-05T13:51:18,381   copying moleculekit/tmalign/tmalign_util.pyx -> build/lib.linux-armv7l-cpython-311/moleculekit/tmalign
2024-06-05T13:51:18,383   copying moleculekit/tmalign/tmalignlib.pxd -> build/lib.linux-armv7l-cpython-311/moleculekit/tmalign
2024-06-05T13:51:18,385   creating build/lib.linux-armv7l-cpython-311/moleculekit/tmalign/include
2024-06-05T13:51:18,386   copying moleculekit/tmalign/include/TMAlign.h -> build/lib.linux-armv7l-cpython-311/moleculekit/tmalign/include
2024-06-05T13:51:18,388   creating build/lib.linux-armv7l-cpython-311/moleculekit/tmalign/src
2024-06-05T13:51:18,389   copying moleculekit/tmalign/src/TMAlign.cpp -> build/lib.linux-armv7l-cpython-311/moleculekit/tmalign/src
2024-06-05T13:51:18,394   creating build/lib.linux-armv7l-cpython-311/moleculekit/wrapping
2024-06-05T13:51:18,395   copying moleculekit/wrapping/wrapping.cpp -> build/lib.linux-armv7l-cpython-311/moleculekit/wrapping
2024-06-05T13:51:18,414   copying moleculekit/wrapping/wrapping.pyx -> build/lib.linux-armv7l-cpython-311/moleculekit/wrapping
2024-06-05T13:51:18,416   creating build/lib.linux-armv7l-cpython-311/moleculekit/interactions/cationpi
2024-06-05T13:51:18,418   copying moleculekit/interactions/cationpi/cationpi.cpp -> build/lib.linux-armv7l-cpython-311/moleculekit/interactions/cationpi
2024-06-05T13:51:18,437   copying moleculekit/interactions/cationpi/cationpi.pyx -> build/lib.linux-armv7l-cpython-311/moleculekit/interactions/cationpi
2024-06-05T13:51:18,439   creating build/lib.linux-armv7l-cpython-311/moleculekit/interactions/hbonds
2024-06-05T13:51:18,440   copying moleculekit/interactions/hbonds/hbonds.cpp -> build/lib.linux-armv7l-cpython-311/moleculekit/interactions/hbonds
2024-06-05T13:51:18,468   copying moleculekit/interactions/hbonds/hbonds.pyx -> build/lib.linux-armv7l-cpython-311/moleculekit/interactions/hbonds
2024-06-05T13:51:18,470   creating build/lib.linux-armv7l-cpython-311/moleculekit/interactions/pipi
2024-06-05T13:51:18,471   copying moleculekit/interactions/pipi/pipi.cpp -> build/lib.linux-armv7l-cpython-311/moleculekit/interactions/pipi
2024-06-05T13:51:18,493   copying moleculekit/interactions/pipi/pipi.pyx -> build/lib.linux-armv7l-cpython-311/moleculekit/interactions/pipi
2024-06-05T13:51:18,495   creating build/lib.linux-armv7l-cpython-311/moleculekit/interactions/sigmahole
2024-06-05T13:51:18,496   copying moleculekit/interactions/sigmahole/sigmahole.cpp -> build/lib.linux-armv7l-cpython-311/moleculekit/interactions/sigmahole
2024-06-05T13:51:18,515   copying moleculekit/interactions/sigmahole/sigmahole.pyx -> build/lib.linux-armv7l-cpython-311/moleculekit/interactions/sigmahole
2024-06-05T13:51:18,518   creating build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/binpos
2024-06-05T13:51:18,519   copying moleculekit/fileformats/binpos/binpos.c -> build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/binpos
2024-06-05T13:51:18,535   copying moleculekit/fileformats/binpos/binpos.pyx -> build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/binpos
2024-06-05T13:51:18,537   copying moleculekit/fileformats/binpos/binposlib.pxd -> build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/binpos
2024-06-05T13:51:18,539   creating build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/binpos/include
2024-06-05T13:51:18,541   copying moleculekit/fileformats/binpos/include/binposplugin.h -> build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/binpos/include
2024-06-05T13:51:18,543   copying moleculekit/fileformats/binpos/include/largefiles.h -> build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/binpos/include
2024-06-05T13:51:18,545   copying moleculekit/fileformats/binpos/include/molfile_plugin.h -> build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/binpos/include
2024-06-05T13:51:18,548   creating build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/binpos/src
2024-06-05T13:51:18,550   copying moleculekit/fileformats/binpos/src/binposplugin.c -> build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/binpos/src
2024-06-05T13:51:18,553   creating build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/dcd
2024-06-05T13:51:18,554   copying moleculekit/fileformats/dcd/dcd.c -> build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/dcd
2024-06-05T13:51:18,571   copying moleculekit/fileformats/dcd/dcd.pyx -> build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/dcd
2024-06-05T13:51:18,574   copying moleculekit/fileformats/dcd/dcdlib.pxd -> build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/dcd
2024-06-05T13:51:18,576   creating build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/dcd/include
2024-06-05T13:51:18,577   copying moleculekit/fileformats/dcd/include/dcdplugin.h -> build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/dcd/include
2024-06-05T13:51:18,579   copying moleculekit/fileformats/dcd/include/endianswap.h -> build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/dcd/include
2024-06-05T13:51:18,582   copying moleculekit/fileformats/dcd/include/fastio.h -> build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/dcd/include
2024-06-05T13:51:18,585   copying moleculekit/fileformats/dcd/include/largefiles.h -> build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/dcd/include
2024-06-05T13:51:18,587   copying moleculekit/fileformats/dcd/include/molfile_plugin.h -> build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/dcd/include
2024-06-05T13:51:18,591   creating build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/dcd/src
2024-06-05T13:51:18,591   copying moleculekit/fileformats/dcd/src/dcdplugin.c -> build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/dcd/src
2024-06-05T13:51:18,594   creating build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/xtc
2024-06-05T13:51:18,595   copying moleculekit/fileformats/xtc/trr.c -> build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/xtc
2024-06-05T13:51:18,615   copying moleculekit/fileformats/xtc/trr.pyx -> build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/xtc
2024-06-05T13:51:18,618   copying moleculekit/fileformats/xtc/trrlib.pxd -> build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/xtc
2024-06-05T13:51:18,620   copying moleculekit/fileformats/xtc/xdrlib.pxd -> build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/xtc
2024-06-05T13:51:18,621   copying moleculekit/fileformats/xtc/xtc.cpp -> build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/xtc
2024-06-05T13:51:18,645   copying moleculekit/fileformats/xtc/xtc.pyx -> build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/xtc
2024-06-05T13:51:18,647   copying moleculekit/fileformats/xtc/xtclib.pxd -> build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/xtc
2024-06-05T13:51:18,648   creating build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/include
2024-06-05T13:51:18,649   copying moleculekit/fileformats/xtc/include/trr_header.h -> build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/include
2024-06-05T13:51:18,651   copying moleculekit/fileformats/xtc/include/xdr_seek.h -> build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/include
2024-06-05T13:51:18,653   copying moleculekit/fileformats/xtc/include/xdrfile.h -> build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/include
2024-06-05T13:51:18,656   copying moleculekit/fileformats/xtc/include/xdrfile_trr.h -> build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/include
2024-06-05T13:51:18,658   copying moleculekit/fileformats/xtc/include/xdrfile_xtc.h -> build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/include
2024-06-05T13:51:18,660   copying moleculekit/fileformats/xtc/include/xtc.h -> build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/include
2024-06-05T13:51:18,662   creating build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/src
2024-06-05T13:51:18,663   copying moleculekit/fileformats/xtc/src/xdr_seek.c -> build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/src
2024-06-05T13:51:18,665   copying moleculekit/fileformats/xtc/src/xdrfile.cpp -> build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/src
2024-06-05T13:51:18,669   copying moleculekit/fileformats/xtc/src/xdrfile_trr.c -> build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/src
2024-06-05T13:51:18,671   copying moleculekit/fileformats/xtc/src/xdrfile_xtc.cpp -> build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/src
2024-06-05T13:51:18,673   copying moleculekit/fileformats/xtc/src/xtc.cpp -> build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/src
2024-06-05T13:51:18,684   UPDATING build/lib.linux-armv7l-cpython-311/moleculekit/_version.py
2024-06-05T13:51:18,685   set build/lib.linux-armv7l-cpython-311/moleculekit/_version.py to '1.8.33'
2024-06-05T13:51:18,686   running build_ext
2024-06-05T13:51:18,697   building 'moleculekit.interactions.hbonds' extension
2024-06-05T13:51:18,698   creating build/temp.linux-armv7l-cpython-311
2024-06-05T13:51:18,698   creating build/temp.linux-armv7l-cpython-311/moleculekit
2024-06-05T13:51:18,699   creating build/temp.linux-armv7l-cpython-311/moleculekit/interactions
2024-06-05T13:51:18,700   creating build/temp.linux-armv7l-cpython-311/moleculekit/interactions/hbonds
2024-06-05T13:51:18,701   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-cpcib7j5/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c moleculekit/interactions/hbonds/hbonds.cpp -o build/temp.linux-armv7l-cpython-311/moleculekit/interactions/hbonds/hbonds.o -O3
2024-06-05T13:51:19,039   In file included from /tmp/pip-build-env-cpcib7j5/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2024-06-05T13:51:19,039                    from /tmp/pip-build-env-cpcib7j5/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2024-06-05T13:51:19,040                    from /tmp/pip-build-env-cpcib7j5/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h:5,
2024-06-05T13:51:19,041                    from moleculekit/interactions/hbonds/hbonds.cpp:1265:
2024-06-05T13:51:19,041   /tmp/pip-build-env-cpcib7j5/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2024-06-05T13:51:19,042      17 | #warning "Using deprecated NumPy API, disable it with " \
2024-06-05T13:51:19,042         |  ^~~~~~~
2024-06-05T13:51:46,480   In function ‘PyObject* __pyx_pf_11moleculekit_12interactions_6hbonds_calculate(PyObject*, PyArrayObject*, PyArrayObject*, PyArrayObject*, PyArrayObject*, PyArrayObject*, PyArrayObject*, float, float, bool, bool)’,
2024-06-05T13:51:46,480       inlined from ‘PyObject* __pyx_pw_11moleculekit_12interactions_6hbonds_1calculate(PyObject*, PyObject* const*, Py_ssize_t, PyObject*)’ at moleculekit/interactions/hbonds/hbonds.cpp:19989:68:
2024-06-05T13:51:46,481   moleculekit/interactions/hbonds/hbonds.cpp:21019:52: warning: ‘__pyx_v_d_idx_h’ may be used uninitialized [-Wmaybe-uninitialized]
2024-06-05T13:51:46,482   21019 |             (__pyx_v_results[__pyx_v_f]).push_back(__pyx_v_d_idx_h);
2024-06-05T13:51:46,482         |                                                    ^~~~~~~~~~~~~~~
2024-06-05T13:51:46,483   moleculekit/interactions/hbonds/hbonds.cpp: In function ‘PyObject* __pyx_pw_11moleculekit_12interactions_6hbonds_1calculate(PyObject*, PyObject* const*, Py_ssize_t, PyObject*)’:
2024-06-05T13:51:46,484   moleculekit/interactions/hbonds/hbonds.cpp:20032:57: note: ‘__pyx_v_d_idx_h’ was declared here
2024-06-05T13:51:46,485   20032 |   __pyx_t_11moleculekit_12interactions_6hbonds_UINT32_t __pyx_v_d_idx_h;
2024-06-05T13:51:46,486         |                                                         ^~~~~~~~~~~~~~~
2024-06-05T13:51:49,494   arm-linux-gnueabihf-g++ -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/moleculekit/interactions/hbonds/hbonds.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/moleculekit/interactions/hbonds.cpython-311-arm-linux-gnueabihf.so
2024-06-05T13:51:49,777   building 'moleculekit.interactions.pipi' extension
2024-06-05T13:51:49,777   creating build/temp.linux-armv7l-cpython-311/moleculekit/interactions/pipi
2024-06-05T13:51:49,778   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-cpcib7j5/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c moleculekit/interactions/pipi/pipi.cpp -o build/temp.linux-armv7l-cpython-311/moleculekit/interactions/pipi/pipi.o -O3
2024-06-05T13:51:50,086   In file included from /tmp/pip-build-env-cpcib7j5/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2024-06-05T13:51:50,087                    from /tmp/pip-build-env-cpcib7j5/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2024-06-05T13:51:50,087                    from /tmp/pip-build-env-cpcib7j5/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h:5,
2024-06-05T13:51:50,088                    from moleculekit/interactions/pipi/pipi.cpp:1265:
2024-06-05T13:51:50,089   /tmp/pip-build-env-cpcib7j5/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2024-06-05T13:51:50,089      17 | #warning "Using deprecated NumPy API, disable it with " \
2024-06-05T13:51:50,090         |  ^~~~~~~
2024-06-05T13:52:23,010   arm-linux-gnueabihf-g++ -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/moleculekit/interactions/pipi/pipi.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/moleculekit/interactions/pipi.cpython-311-arm-linux-gnueabihf.so
2024-06-05T13:52:23,290   building 'moleculekit.interactions.cationpi' extension
2024-06-05T13:52:23,291   creating build/temp.linux-armv7l-cpython-311/moleculekit/interactions/cationpi
2024-06-05T13:52:23,291   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-cpcib7j5/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c moleculekit/interactions/cationpi/cationpi.cpp -o build/temp.linux-armv7l-cpython-311/moleculekit/interactions/cationpi/cationpi.o -O3
2024-06-05T13:52:23,598   In file included from /tmp/pip-build-env-cpcib7j5/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2024-06-05T13:52:23,599                    from /tmp/pip-build-env-cpcib7j5/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2024-06-05T13:52:23,600                    from /tmp/pip-build-env-cpcib7j5/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h:5,
2024-06-05T13:52:23,600                    from moleculekit/interactions/cationpi/cationpi.cpp:1265:
2024-06-05T13:52:23,601   /tmp/pip-build-env-cpcib7j5/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2024-06-05T13:52:23,601      17 | #warning "Using deprecated NumPy API, disable it with " \
2024-06-05T13:52:23,602         |  ^~~~~~~
2024-06-05T13:52:55,835   arm-linux-gnueabihf-g++ -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/moleculekit/interactions/cationpi/cationpi.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/moleculekit/interactions/cationpi.cpython-311-arm-linux-gnueabihf.so
2024-06-05T13:52:56,130   building 'moleculekit.interactions.sigmahole' extension
2024-06-05T13:52:56,130   creating build/temp.linux-armv7l-cpython-311/moleculekit/interactions/sigmahole
2024-06-05T13:52:56,131   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-cpcib7j5/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c moleculekit/interactions/sigmahole/sigmahole.cpp -o build/temp.linux-armv7l-cpython-311/moleculekit/interactions/sigmahole/sigmahole.o -O3
2024-06-05T13:52:56,436   In file included from /tmp/pip-build-env-cpcib7j5/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2024-06-05T13:52:56,436                    from /tmp/pip-build-env-cpcib7j5/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2024-06-05T13:52:56,437                    from /tmp/pip-build-env-cpcib7j5/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h:5,
2024-06-05T13:52:56,437                    from moleculekit/interactions/sigmahole/sigmahole.cpp:1265:
2024-06-05T13:52:56,438   /tmp/pip-build-env-cpcib7j5/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2024-06-05T13:52:56,439      17 | #warning "Using deprecated NumPy API, disable it with " \
2024-06-05T13:52:56,439         |  ^~~~~~~
2024-06-05T13:53:28,403   arm-linux-gnueabihf-g++ -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/moleculekit/interactions/sigmahole/sigmahole.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/moleculekit/interactions/sigmahole.cpython-311-arm-linux-gnueabihf.so
2024-06-05T13:53:28,693   building 'moleculekit.wrapping' extension
2024-06-05T13:53:28,694   creating build/temp.linux-armv7l-cpython-311/moleculekit/wrapping
2024-06-05T13:53:28,695   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-cpcib7j5/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c moleculekit/wrapping/wrapping.cpp -o build/temp.linux-armv7l-cpython-311/moleculekit/wrapping/wrapping.o -O3
2024-06-05T13:53:29,003   In file included from /tmp/pip-build-env-cpcib7j5/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2024-06-05T13:53:29,003                    from /tmp/pip-build-env-cpcib7j5/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2024-06-05T13:53:29,004                    from /tmp/pip-build-env-cpcib7j5/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h:5,
2024-06-05T13:53:29,004                    from moleculekit/wrapping/wrapping.cpp:1265:
2024-06-05T13:53:29,005   /tmp/pip-build-env-cpcib7j5/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2024-06-05T13:53:29,005      17 | #warning "Using deprecated NumPy API, disable it with " \
2024-06-05T13:53:29,006         |  ^~~~~~~
2024-06-05T13:53:59,334   arm-linux-gnueabihf-g++ -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/moleculekit/wrapping/wrapping.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/moleculekit/wrapping.cpython-311-arm-linux-gnueabihf.so
2024-06-05T13:53:59,533   building 'moleculekit.bondguesser_utils' extension
2024-06-05T13:53:59,533   creating build/temp.linux-armv7l-cpython-311/moleculekit/bondguesser_utils
2024-06-05T13:53:59,534   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-cpcib7j5/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c moleculekit/bondguesser_utils/bondguesser_utils.cpp -o build/temp.linux-armv7l-cpython-311/moleculekit/bondguesser_utils/bondguesser_utils.o -O3
2024-06-05T13:53:59,845   In file included from /tmp/pip-build-env-cpcib7j5/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2024-06-05T13:53:59,846                    from /tmp/pip-build-env-cpcib7j5/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2024-06-05T13:53:59,846                    from /tmp/pip-build-env-cpcib7j5/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h:5,
2024-06-05T13:53:59,847                    from moleculekit/bondguesser_utils/bondguesser_utils.cpp:1265:
2024-06-05T13:53:59,847   /tmp/pip-build-env-cpcib7j5/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2024-06-05T13:53:59,848      17 | #warning "Using deprecated NumPy API, disable it with " \
2024-06-05T13:53:59,849         |  ^~~~~~~
2024-06-05T13:54:02,167   moleculekit/bondguesser_utils/bondguesser_utils.cpp: In function ‘PyObject* __pyx_pf_11moleculekit_17bondguesser_utils_make_grid_neighborlist_nonperiodic(PyObject*, __Pyx_memviewslice, __pyx_t_11moleculekit_17bondguesser_utils_UINT32_t, __pyx_t_11moleculekit_17bondguesser_utils_UINT32_t, __pyx_t_11moleculekit_17bondguesser_utils_UINT32_t)’:
2024-06-05T13:54:02,168   moleculekit/bondguesser_utils/bondguesser_utils.cpp:19801:33: warning: comparison of integer expressions of different signedness: ‘int’ and ‘__pyx_t_11moleculekit_17bondguesser_utils_UINT32_t’ {aka ‘long unsigned int’} [-Wsign-compare]
2024-06-05T13:54:02,169   19801 |   for (__pyx_t_3 = 0; __pyx_t_3 < __pyx_t_2; __pyx_t_3+=1) {
2024-06-05T13:54:02,169         |                       ~~~~~~~~~~^~~~~~~~~~~
2024-06-05T13:54:02,170   moleculekit/bondguesser_utils/bondguesser_utils.cpp:19813:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘__pyx_t_11moleculekit_17bondguesser_utils_UINT32_t’ {aka ‘long unsigned int’} [-Wsign-compare]
2024-06-05T13:54:02,170   19813 |     for (__pyx_t_6 = 0; __pyx_t_6 < __pyx_t_5; __pyx_t_6+=1) {
2024-06-05T13:54:02,171         |                         ~~~~~~~~~~^~~~~~~~~~~
2024-06-05T13:54:02,171   moleculekit/bondguesser_utils/bondguesser_utils.cpp:19825:37: warning: comparison of integer expressions of different signedness: ‘int’ and ‘__pyx_t_11moleculekit_17bondguesser_utils_UINT32_t’ {aka ‘long unsigned int’} [-Wsign-compare]
2024-06-05T13:54:02,172   19825 |       for (__pyx_t_9 = 0; __pyx_t_9 < __pyx_t_8; __pyx_t_9+=1) {
2024-06-05T13:54:02,173         |                           ~~~~~~~~~~^~~~~~~~~~~
2024-06-05T13:54:02,173   moleculekit/bondguesser_utils/bondguesser_utils.cpp:19864:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-06-05T13:54:02,174   19864 |         __pyx_t_12 = (__pyx_v_xi < (__pyx_v_xboxes - 1));
2024-06-05T13:54:02,175         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-06-05T13:54:02,175   moleculekit/bondguesser_utils/bondguesser_utils.cpp:19903:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-06-05T13:54:02,176   19903 |         __pyx_t_12 = (__pyx_v_yi < (__pyx_v_yboxes - 1));
2024-06-05T13:54:02,177         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-06-05T13:54:02,178   moleculekit/bondguesser_utils/bondguesser_utils.cpp:19942:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-06-05T13:54:02,178   19942 |         __pyx_t_12 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2024-06-05T13:54:02,179         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-06-05T13:54:02,180   moleculekit/bondguesser_utils/bondguesser_utils.cpp:19981:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-06-05T13:54:02,180   19981 |         __pyx_t_13 = (__pyx_v_xi < (__pyx_v_xboxes - 1));
2024-06-05T13:54:02,181         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-06-05T13:54:02,181   moleculekit/bondguesser_utils/bondguesser_utils.cpp:19987:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-06-05T13:54:02,182   19987 |         __pyx_t_13 = (__pyx_v_yi < (__pyx_v_yboxes - 1));
2024-06-05T13:54:02,183         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-06-05T13:54:02,184   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20028:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-06-05T13:54:02,184   20028 |         __pyx_t_13 = (__pyx_v_xi < (__pyx_v_xboxes - 1));
2024-06-05T13:54:02,185         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-06-05T13:54:02,186   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20034:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-06-05T13:54:02,186   20034 |         __pyx_t_13 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2024-06-05T13:54:02,187         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-06-05T13:54:02,187   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20075:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-06-05T13:54:02,188   20075 |         __pyx_t_13 = (__pyx_v_yi < (__pyx_v_yboxes - 1));
2024-06-05T13:54:02,188         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-06-05T13:54:02,189   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20081:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-06-05T13:54:02,189   20081 |         __pyx_t_13 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2024-06-05T13:54:02,190         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-06-05T13:54:02,190   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20122:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-06-05T13:54:02,191   20122 |         __pyx_t_13 = (__pyx_v_xi < (__pyx_v_xboxes - 1));
2024-06-05T13:54:02,192         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-06-05T13:54:02,192   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20175:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-06-05T13:54:02,193   20175 |         __pyx_t_13 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2024-06-05T13:54:02,194         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-06-05T13:54:02,195   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20222:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-06-05T13:54:02,195   20222 |         __pyx_t_13 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2024-06-05T13:54:02,196         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-06-05T13:54:02,196   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20263:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-06-05T13:54:02,197   20263 |         __pyx_t_13 = (__pyx_v_xi < (__pyx_v_xboxes - 1));
2024-06-05T13:54:02,198         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-06-05T13:54:02,198   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20269:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-06-05T13:54:02,199   20269 |         __pyx_t_13 = (__pyx_v_yi < (__pyx_v_yboxes - 1));
2024-06-05T13:54:02,200         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-06-05T13:54:02,200   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20275:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-06-05T13:54:02,201   20275 |         __pyx_t_13 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2024-06-05T13:54:02,202         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-06-05T13:54:02,202   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20322:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-06-05T13:54:02,203   20322 |         __pyx_t_13 = (__pyx_v_yi < (__pyx_v_yboxes - 1));
2024-06-05T13:54:02,204         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-06-05T13:54:02,205   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20328:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-06-05T13:54:02,206   20328 |         __pyx_t_13 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2024-06-05T13:54:02,206         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-06-05T13:54:02,207   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20369:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-06-05T13:54:02,207   20369 |         __pyx_t_13 = (__pyx_v_xi < (__pyx_v_xboxes - 1));
2024-06-05T13:54:02,208         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-06-05T13:54:02,208   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20381:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-06-05T13:54:02,209   20381 |         __pyx_t_13 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2024-06-05T13:54:02,209         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-06-05T13:54:02,210   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20434:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-06-05T13:54:02,210   20434 |         __pyx_t_13 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2024-06-05T13:54:02,211         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-06-05T13:54:02,218   moleculekit/bondguesser_utils/bondguesser_utils.cpp: In function ‘PyObject* __pyx_pf_11moleculekit_17bondguesser_utils_2grid_bonds(PyObject*, __Pyx_memviewslice, __Pyx_memviewslice, __Pyx_memviewslice, float, int, __Pyx_memviewslice, __Pyx_memviewslice)’:
2024-06-05T13:54:02,218   moleculekit/bondguesser_utils/bondguesser_utils.cpp:21056:37: warning: comparison of integer expressions of different signedness: ‘__pyx_t_11moleculekit_17bondguesser_utils_UINT32_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
2024-06-05T13:54:02,219   21056 |       __pyx_t_6 = (__pyx_v_boxneigh == __pyx_v_n_boxes);
2024-06-05T13:54:02,220         |                    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
2024-06-05T13:54:02,221   moleculekit/bondguesser_utils/bondguesser_utils.cpp:21093:37: warning: comparison of integer expressions of different signedness: ‘__pyx_t_11moleculekit_17bondguesser_utils_UINT32_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
2024-06-05T13:54:02,221   21093 |       __pyx_t_6 = (__pyx_v_boxneigh == __pyx_v_boxidx);
2024-06-05T13:54:02,222         |                    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
2024-06-05T13:54:28,869   arm-linux-gnueabihf-g++ -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/moleculekit/bondguesser_utils/bondguesser_utils.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/moleculekit/bondguesser_utils.cpython-311-arm-linux-gnueabihf.so
2024-06-05T13:54:29,154   building 'moleculekit.atomselect_utils' extension
2024-06-05T13:54:29,155   creating build/temp.linux-armv7l-cpython-311/moleculekit/atomselect_utils
2024-06-05T13:54:29,155   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-cpcib7j5/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c moleculekit/atomselect_utils/atomselect_utils.cpp -o build/temp.linux-armv7l-cpython-311/moleculekit/atomselect_utils/atomselect_utils.o -O3
2024-06-05T13:54:29,463   In file included from /tmp/pip-build-env-cpcib7j5/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2024-06-05T13:54:29,463                    from /tmp/pip-build-env-cpcib7j5/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2024-06-05T13:54:29,464                    from /tmp/pip-build-env-cpcib7j5/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h:5,
2024-06-05T13:54:29,465                    from moleculekit/atomselect_utils/atomselect_utils.cpp:1282:
2024-06-05T13:54:29,465   /tmp/pip-build-env-cpcib7j5/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2024-06-05T13:54:29,466      17 | #warning "Using deprecated NumPy API, disable it with " \
2024-06-05T13:54:29,466         |  ^~~~~~~
2024-06-05T13:54:31,982   moleculekit/atomselect_utils/atomselect_utils.cpp: In function ‘bool __pyx_f_11moleculekit_16atomselect_utils__find_connected_subfragment(int, int, const char*, const char*, const char*, __Pyx_memviewslice, __Pyx_memviewslice, __Pyx_memviewslice, std::vector<std::__cxx11::basic_string<char> >&, __Pyx_memviewslice, std::vector<std::vector<int> >&, std::vector<std::vector<int> >&, std::vector<std::vector<int> >&)’:
2024-06-05T13:54:31,983   moleculekit/atomselect_utils/atomselect_utils.cpp:23255:161: warning: comparison of integer expressions of different signedness: ‘__pyx_t_11moleculekit_16atomselect_utils_UINT32_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
2024-06-05T13:54:31,983   23255 |       __pyx_t_3 = ((*((__pyx_t_11moleculekit_16atomselect_utils_UINT32_t *) ( /* dim=0 */ (__pyx_v_uq_resid.data + __pyx_t_2 * __pyx_v_uq_resid.strides[0]) ))) != __pyx_v_resnum);
2024-06-05T13:54:31,984         |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
2024-06-05T13:54:31,991   moleculekit/atomselect_utils/atomselect_utils.cpp: In function ‘bool __pyx_f_11moleculekit_16atomselect_utils__find_subfragments(int, std::vector<std::vector<int> >&, std::vector<std::vector<int> >&, __Pyx_memviewslice, __Pyx_memviewslice, __Pyx_memviewslice, std::vector<std::__cxx11::basic_string<char> >&, __Pyx_memviewslice, std::vector<std::vector<int> >&)’:
2024-06-05T13:54:31,992   moleculekit/atomselect_utils/atomselect_utils.cpp:23507:163: warning: comparison of integer expressions of different signedness: ‘__pyx_t_11moleculekit_16atomselect_utils_UINT32_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
2024-06-05T13:54:31,993   23507 |         __pyx_t_6 = ((*((__pyx_t_11moleculekit_16atomselect_utils_UINT32_t *) ( /* dim=0 */ (__pyx_v_uq_resid.data + __pyx_t_5 * __pyx_v_uq_resid.strides[0]) ))) != __pyx_v_i);
2024-06-05T13:54:31,993         |                      ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2024-06-05T13:54:32,000   moleculekit/atomselect_utils/atomselect_utils.cpp: In function ‘bool __pyx_f_11moleculekit_16atomselect_utils__find_subfragments_topologically(int, std::vector<std::vector<int> >&, std::vector<std::vector<int> >&, __Pyx_memviewslice, __Pyx_memviewslice, __Pyx_memviewslice, std::vector<std::__cxx11::basic_string<char> >&, __Pyx_memviewslice, std::vector<std::vector<int> >&)’:
2024-06-05T13:54:32,001   moleculekit/atomselect_utils/atomselect_utils.cpp:23774:163: warning: comparison of integer expressions of different signedness: ‘__pyx_t_11moleculekit_16atomselect_utils_UINT32_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
2024-06-05T13:54:32,002   23774 |         __pyx_t_6 = ((*((__pyx_t_11moleculekit_16atomselect_utils_UINT32_t *) ( /* dim=0 */ (__pyx_v_uq_resid.data + __pyx_t_5 * __pyx_v_uq_resid.strides[0]) ))) != __pyx_v_i);
2024-06-05T13:54:32,002         |                      ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2024-06-05T13:55:06,215   arm-linux-gnueabihf-g++ -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/moleculekit/atomselect_utils/atomselect_utils.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/moleculekit/atomselect_utils.cpython-311-arm-linux-gnueabihf.so
2024-06-05T13:55:06,508   building 'moleculekit.distance_utils' extension
2024-06-05T13:55:06,509   creating build/temp.linux-armv7l-cpython-311/moleculekit/distance_utils
2024-06-05T13:55:06,509   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-cpcib7j5/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c moleculekit/distance_utils/distance_utils.cpp -o build/temp.linux-armv7l-cpython-311/moleculekit/distance_utils/distance_utils.o -O3
2024-06-05T13:55:06,817   In file included from /tmp/pip-build-env-cpcib7j5/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2024-06-05T13:55:06,818                    from /tmp/pip-build-env-cpcib7j5/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2024-06-05T13:55:06,818                    from /tmp/pip-build-env-cpcib7j5/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h:5,
2024-06-05T13:55:06,819                    from moleculekit/distance_utils/distance_utils.cpp:1265:
2024-06-05T13:55:06,819   /tmp/pip-build-env-cpcib7j5/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2024-06-05T13:55:06,820      17 | #warning "Using deprecated NumPy API, disable it with " \
2024-06-05T13:55:06,820         |  ^~~~~~~
2024-06-05T13:55:09,221   moleculekit/distance_utils/distance_utils.cpp: In function ‘PyObject* __pyx_pf_11moleculekit_14distance_utils_2get_collisions(PyObject*, __Pyx_memviewslice, __Pyx_memviewslice, float)’:
2024-06-05T13:55:09,221   moleculekit/distance_utils/distance_utils.cpp:21359:33: warning: comparison of integer expressions of different signedness: ‘__pyx_t_11moleculekit_14distance_utils_UINT32_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
2024-06-05T13:55:09,222   21359 |   for (__pyx_t_3 = 0; __pyx_t_3 < __pyx_t_2; __pyx_t_3+=1) {
2024-06-05T13:55:09,223         |                       ~~~~~~~~~~^~~~~~~~~~~
2024-06-05T13:55:09,223   moleculekit/distance_utils/distance_utils.cpp:21371:35: warning: comparison of integer expressions of different signedness: ‘__pyx_t_11moleculekit_14distance_utils_UINT32_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
2024-06-05T13:55:09,224   21371 |     for (__pyx_t_6 = 0; __pyx_t_6 < __pyx_t_5; __pyx_t_6+=1) {
2024-06-05T13:55:09,225         |                         ~~~~~~~~~~^~~~~~~~~~~
2024-06-05T13:55:46,443   arm-linux-gnueabihf-g++ -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/moleculekit/distance_utils/distance_utils.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/moleculekit/distance_utils.cpython-311-arm-linux-gnueabihf.so
2024-06-05T13:55:46,732   building 'moleculekit.occupancy_utils' extension
2024-06-05T13:55:46,732   creating build/temp.linux-armv7l-cpython-311/moleculekit/occupancy_utils
2024-06-05T13:55:46,733   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-cpcib7j5/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c moleculekit/occupancy_utils/occupancy_utils.cpp -o build/temp.linux-armv7l-cpython-311/moleculekit/occupancy_utils/occupancy_utils.o -O3
2024-06-05T13:55:47,072   In file included from /tmp/pip-build-env-cpcib7j5/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2024-06-05T13:55:47,072                    from /tmp/pip-build-env-cpcib7j5/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2024-06-05T13:55:47,073                    from /tmp/pip-build-env-cpcib7j5/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h:5,
2024-06-05T13:55:47,074                    from moleculekit/occupancy_utils/occupancy_utils.cpp:1265:
2024-06-05T13:55:47,074   /tmp/pip-build-env-cpcib7j5/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2024-06-05T13:55:47,075      17 | #warning "Using deprecated NumPy API, disable it with " \
2024-06-05T13:55:47,075         |  ^~~~~~~
2024-06-05T13:56:14,232   arm-linux-gnueabihf-g++ -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/moleculekit/occupancy_utils/occupancy_utils.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/moleculekit/occupancy_utils.cpython-311-arm-linux-gnueabihf.so
2024-06-05T13:56:14,417   building 'moleculekit.cython_utils' extension
2024-06-05T13:56:14,417   creating build/temp.linux-armv7l-cpython-311/moleculekit/cython_utils
2024-06-05T13:56:14,418   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-cpcib7j5/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c moleculekit/cython_utils/cython_utils.cpp -o build/temp.linux-armv7l-cpython-311/moleculekit/cython_utils/cython_utils.o -O3
2024-06-05T13:56:14,720   In file included from /tmp/pip-build-env-cpcib7j5/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2024-06-05T13:56:14,721                    from /tmp/pip-build-env-cpcib7j5/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2024-06-05T13:56:14,722                    from /tmp/pip-build-env-cpcib7j5/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h:5,
2024-06-05T13:56:14,722                    from moleculekit/cython_utils/cython_utils.cpp:1265:
2024-06-05T13:56:14,723   /tmp/pip-build-env-cpcib7j5/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2024-06-05T13:56:14,723      17 | #warning "Using deprecated NumPy API, disable it with " \
2024-06-05T13:56:14,724         |  ^~~~~~~
2024-06-05T13:56:44,595   arm-linux-gnueabihf-g++ -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/moleculekit/cython_utils/cython_utils.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/moleculekit/cython_utils.cpython-311-arm-linux-gnueabihf.so
2024-06-05T13:56:44,866   building 'moleculekit.xtc' extension
2024-06-05T13:56:44,867   creating build/temp.linux-armv7l-cpython-311/moleculekit/fileformats
2024-06-05T13:56:44,867   creating build/temp.linux-armv7l-cpython-311/moleculekit/fileformats/xtc
2024-06-05T13:56:44,868   creating build/temp.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/src
2024-06-05T13:56:44,869   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/fileformats/xtc -Imoleculekit/fileformats/xtc/include/ -Imoleculekit/fileformats/xtc/ -I/tmp/pip-build-env-cpcib7j5/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c moleculekit/fileformats/xtc/src/xdrfile.cpp -o build/temp.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/src/xdrfile.o
2024-06-05T13:56:45,553   moleculekit/fileformats/xtc/src/xdrfile.cpp:66:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-06-05T13:56:45,554      66 |         "OK",
2024-06-05T13:56:45,555         |         ^~~~
2024-06-05T13:56:45,556   moleculekit/fileformats/xtc/src/xdrfile.cpp:67:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-06-05T13:56:45,556      67 |         "Header",
2024-06-05T13:56:45,557         |         ^~~~~~~~
2024-06-05T13:56:45,558   moleculekit/fileformats/xtc/src/xdrfile.cpp:68:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-06-05T13:56:45,558      68 |         "String",
2024-06-05T13:56:45,559         |         ^~~~~~~~
2024-06-05T13:56:45,559   moleculekit/fileformats/xtc/src/xdrfile.cpp:69:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-06-05T13:56:45,560      69 |         "Double",
2024-06-05T13:56:45,560         |         ^~~~~~~~
2024-06-05T13:56:45,561   moleculekit/fileformats/xtc/src/xdrfile.cpp:70:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-06-05T13:56:45,561      70 |         "Integer",
2024-06-05T13:56:45,562         |         ^~~~~~~~~
2024-06-05T13:56:45,562   moleculekit/fileformats/xtc/src/xdrfile.cpp:71:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-06-05T13:56:45,563      71 |         "Float",
2024-06-05T13:56:45,564         |         ^~~~~~~
2024-06-05T13:56:45,564   moleculekit/fileformats/xtc/src/xdrfile.cpp:72:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-06-05T13:56:45,565      72 |         "Unsigned integer",
2024-06-05T13:56:45,565         |         ^~~~~~~~~~~~~~~~~~
2024-06-05T13:56:45,566   moleculekit/fileformats/xtc/src/xdrfile.cpp:73:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-06-05T13:56:45,566      73 |         "Compressed 3D coordinate",
2024-06-05T13:56:45,567         |         ^~~~~~~~~~~~~~~~~~~~~~~~~~
2024-06-05T13:56:45,568   moleculekit/fileformats/xtc/src/xdrfile.cpp:74:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-06-05T13:56:45,569      74 |         "Closing file",
2024-06-05T13:56:45,569         |         ^~~~~~~~~~~~~~
2024-06-05T13:56:45,570   moleculekit/fileformats/xtc/src/xdrfile.cpp:75:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-06-05T13:56:45,571      75 |         "Magic number",
2024-06-05T13:56:45,572         |         ^~~~~~~~~~~~~~
2024-06-05T13:56:45,572   moleculekit/fileformats/xtc/src/xdrfile.cpp:76:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-06-05T13:56:45,573      76 |         "Not enough memory",
2024-06-05T13:56:45,574         |         ^~~~~~~~~~~~~~~~~~~
2024-06-05T13:56:45,574   moleculekit/fileformats/xtc/src/xdrfile.cpp:77:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-06-05T13:56:45,575      77 |         "End of file",
2024-06-05T13:56:45,576         |         ^~~~~~~~~~~~~
2024-06-05T13:56:45,576   moleculekit/fileformats/xtc/src/xdrfile.cpp:78:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-06-05T13:56:45,577      78 |         "File not found"
2024-06-05T13:56:45,578         |         ^~~~~~~~~~~~~~~~
2024-06-05T13:56:45,578   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘int sizeofint(int)’:
2024-06-05T13:56:45,579   moleculekit/fileformats/xtc/src/xdrfile.cpp:459:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-06-05T13:56:45,580     459 |     while (size >= num && num_of_bits < 32)
2024-06-05T13:56:45,580         |            ~~~~~^~~~~~
2024-06-05T13:56:45,581   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘int sizeofints(int, unsigned int*)’:
2024-06-05T13:56:45,582   moleculekit/fileformats/xtc/src/xdrfile.cpp:505:32: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-06-05T13:56:45,583     505 |     while (bytes[num_of_bytes] >= num)
2024-06-05T13:56:45,583         |            ~~~~~~~~~~~~~~~~~~~~^~~~~~
2024-06-05T13:56:45,584   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘void encodeints(int*, int, int, unsigned int*, unsigned int*)’:
2024-06-05T13:56:45,584   moleculekit/fileformats/xtc/src/xdrfile.cpp:614:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-06-05T13:56:45,585     614 |     if (num_of_bits >= num_of_bytes * 8)
2024-06-05T13:56:45,585         |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
2024-06-05T13:56:45,586   moleculekit/fileformats/xtc/src/xdrfile.cpp:616:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-06-05T13:56:45,586     616 |                 for (i = 0; i < num_of_bytes; i++)
2024-06-05T13:56:45,587         |                             ~~^~~~~~~~~~~~~~
2024-06-05T13:56:45,587   moleculekit/fileformats/xtc/src/xdrfile.cpp:624:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-06-05T13:56:45,588     624 |                 for (i = 0; i < num_of_bytes-1; i++)
2024-06-05T13:56:45,588         |                             ~~^~~~~~~~~~~~~~~~
2024-06-05T13:56:45,589   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘int decodebits(int*, int)’:
2024-06-05T13:56:45,589   moleculekit/fileformats/xtc/src/xdrfile.cpp:664:30: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-06-05T13:56:45,590     664 |                 if (lastbits < num_of_bits)
2024-06-05T13:56:45,590         |                     ~~~~~~~~~^~~~~~~~~~~~~
2024-06-05T13:56:45,591   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘int xdrfile_decompress_coord_float(float*, int*, float*, XDRFILE*)’:
2024-06-05T13:56:45,592   moleculekit/fileformats/xtc/src/xdrfile.cpp:785:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-06-05T13:56:45,592     785 |         if(size3>xfp->buf1size)
2024-06-05T13:56:45,593         |            ~~~~~^~~~~~~~~~~~~~
2024-06-05T13:56:45,594   moleculekit/fileformats/xtc/src/xdrfile.cpp:842:26: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-06-05T13:56:45,595     842 |         maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2024-06-05T13:56:45,595         |                          ^
2024-06-05T13:56:45,596   moleculekit/fileformats/xtc/src/xdrfile.cpp:932:45: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-06-05T13:56:45,597     932 |                                 if(countmjh >= size3 ) { return -1; }
2024-06-05T13:56:45,598         |                                    ~~~~~~~~~^~~~~~~~
2024-06-05T13:56:45,598   moleculekit/fileformats/xtc/src/xdrfile.cpp:935:45: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-06-05T13:56:45,599     935 |                                 if(countmjh >= size3 ) { return -1; }
2024-06-05T13:56:45,599         |                                    ~~~~~~~~~^~~~~~~~
2024-06-05T13:56:45,600   moleculekit/fileformats/xtc/src/xdrfile.cpp:938:45: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-06-05T13:56:45,601     938 |                                 if(countmjh >= size3 ) { return -1; }
2024-06-05T13:56:45,601         |                                    ~~~~~~~~~^~~~~~~~
2024-06-05T13:56:45,602   moleculekit/fileformats/xtc/src/xdrfile.cpp:945:45: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-06-05T13:56:45,603     945 |                                 if(countmjh >= size3 ) { return -1; }
2024-06-05T13:56:45,603         |                                    ~~~~~~~~~^~~~~~~~
2024-06-05T13:56:45,604   moleculekit/fileformats/xtc/src/xdrfile.cpp:948:45: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-06-05T13:56:45,605     948 |                                 if(countmjh >= size3 ) { return -1; }
2024-06-05T13:56:45,606         |                                    ~~~~~~~~~^~~~~~~~
2024-06-05T13:56:45,606   moleculekit/fileformats/xtc/src/xdrfile.cpp:951:45: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-06-05T13:56:45,607     951 |                                 if(countmjh >= size3 ) { return -1; }
2024-06-05T13:56:45,607         |                                    ~~~~~~~~~^~~~~~~~
2024-06-05T13:56:45,608   moleculekit/fileformats/xtc/src/xdrfile.cpp:756:24: warning: variable ‘minidx’ set but not used [-Wunused-but-set-variable]
2024-06-05T13:56:45,608     756 |         int smallidx,  minidx, maxidx;
2024-06-05T13:56:45,609         |                        ^~~~~~
2024-06-05T13:56:45,609   moleculekit/fileformats/xtc/src/xdrfile.cpp:759:32: warning: variable ‘larger’ set but not used [-Wunused-but-set-variable]
2024-06-05T13:56:45,610     759 |         int smallnum, smaller, larger, i, is_smaller, run;
2024-06-05T13:56:45,610         |                                ^~~~~~
2024-06-05T13:56:45,611   moleculekit/fileformats/xtc/src/xdrfile.cpp:763:13: warning: unused variable ‘errval’ [-Wunused-variable]
2024-06-05T13:56:45,611     763 |         int errval=1;
2024-06-05T13:56:45,612         |             ^~~~~~
2024-06-05T13:56:45,612   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘int xdrfile_compress_coord_float(float*, int, float, XDRFILE*)’:
2024-06-05T13:56:45,613   moleculekit/fileformats/xtc/src/xdrfile.cpp:1011:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-06-05T13:56:45,614    1011 |         if(size3>xfp->buf1size)
2024-06-05T13:56:45,615         |            ~~~~~^~~~~~~~~~~~~~
2024-06-05T13:56:45,615   moleculekit/fileformats/xtc/src/xdrfile.cpp:1068:41: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-06-05T13:56:45,616    1068 |                 countmjh++; if( countmjh> size3) { return -1; }
2024-06-05T13:56:45,617         |                                 ~~~~~~~~^~~~~~~
2024-06-05T13:56:45,617   moleculekit/fileformats/xtc/src/xdrfile.cpp:1084:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-06-05T13:56:45,618    1084 |           countmjh++; if( countmjh> size3) { return -1; }
2024-06-05T13:56:45,619         |                           ~~~~~~~~^~~~~~~
2024-06-05T13:56:45,619   moleculekit/fileformats/xtc/src/xdrfile.cpp:1098:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-06-05T13:56:45,620    1098 |           countmjh++; if( countmjh> size3) { return -1; }
2024-06-05T13:56:45,621         |                           ~~~~~~~~^~~~~~~
2024-06-05T13:56:45,621   moleculekit/fileformats/xtc/src/xdrfile.cpp:1137:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-06-05T13:56:45,622    1137 |         while (smallidx < LASTIDX && magicints[smallidx] < mindiff)
2024-06-05T13:56:45,622         |                         ^
2024-06-05T13:56:45,623   moleculekit/fileformats/xtc/src/xdrfile.cpp:1143:26: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-06-05T13:56:45,624    1143 |         maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2024-06-05T13:56:45,624         |                          ^
2024-06-05T13:56:45,625   moleculekit/fileformats/xtc/src/xdrfile.cpp:1275:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-06-05T13:56:45,626    1275 |         if(tmp==(unsigned int)buf2[0])
2024-06-05T13:56:45,627         |            ~~~^~~~~~~~~~~~~~~~~~~~~~~
2024-06-05T13:56:45,627   moleculekit/fileformats/xtc/src/xdrfile.cpp:1001:13: warning: variable ‘errval’ set but not used [-Wunused-but-set-variable]
2024-06-05T13:56:45,628    1001 |         int errval;
2024-06-05T13:56:45,628         |             ^~~~~~
2024-06-05T13:56:45,629   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘int xdrfile_decompress_coord_double(double*, int*, double*, XDRFILE*)’:
2024-06-05T13:56:45,630   moleculekit/fileformats/xtc/src/xdrfile.cpp:1316:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-06-05T13:56:45,630    1316 |         if(size3>xfp->buf1size)
2024-06-05T13:56:45,631         |            ~~~~~^~~~~~~~~~~~~~
2024-06-05T13:56:45,631   moleculekit/fileformats/xtc/src/xdrfile.cpp:1377:26: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-06-05T13:56:45,632    1377 |         maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2024-06-05T13:56:45,632         |                          ^
2024-06-05T13:56:45,633   moleculekit/fileformats/xtc/src/xdrfile.cpp:1289:32: warning: variable ‘minidx’ set but not used [-Wunused-but-set-variable]
2024-06-05T13:56:45,633    1289 |         int smallidx,  maxidx, minidx;
2024-06-05T13:56:45,634         |                                ^~~~~~
2024-06-05T13:56:45,634   moleculekit/fileformats/xtc/src/xdrfile.cpp:1292:32: warning: variable ‘larger’ set but not used [-Wunused-but-set-variable]
2024-06-05T13:56:45,635    1292 |         int smallnum, smaller, larger, i, is_smaller, run;
2024-06-05T13:56:45,636         |                                ^~~~~~
2024-06-05T13:56:45,636   moleculekit/fileformats/xtc/src/xdrfile.cpp:1297:13: warning: unused variable ‘errval’ [-Wunused-variable]
2024-06-05T13:56:45,637    1297 |         int errval=1;
2024-06-05T13:56:45,638         |             ^~~~~~
2024-06-05T13:56:45,638   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘int xdrfile_compress_coord_double(double*, int, double, XDRFILE*)’:
2024-06-05T13:56:45,639   moleculekit/fileformats/xtc/src/xdrfile.cpp:1513:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-06-05T13:56:45,640    1513 |         if(size3>xfp->buf1size) {
2024-06-05T13:56:45,640         |            ~~~~~^~~~~~~~~~~~~~
2024-06-05T13:56:45,641   moleculekit/fileformats/xtc/src/xdrfile.cpp:1628:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-06-05T13:56:45,642    1628 |         while (smallidx < LASTIDX && magicints[smallidx] < mindiff) {
2024-06-05T13:56:45,643         |                         ^
2024-06-05T13:56:45,643   moleculekit/fileformats/xtc/src/xdrfile.cpp:1633:26: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-06-05T13:56:45,644    1633 |         maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2024-06-05T13:56:45,645         |                          ^
2024-06-05T13:56:45,645   moleculekit/fileformats/xtc/src/xdrfile.cpp:1743:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-06-05T13:56:45,646    1743 |         if(tmp==(unsigned int)buf2[0])
2024-06-05T13:56:45,646         |            ~~~^~~~~~~~~~~~~~~~~~~~~~~
2024-06-05T13:56:45,647   moleculekit/fileformats/xtc/src/xdrfile.cpp:1504:13: warning: variable ‘errval’ set but not used [-Wunused-but-set-variable]
2024-06-05T13:56:45,648    1504 |         int errval=1;
2024-06-05T13:56:45,649         |             ^~~~~~
2024-06-05T13:56:48,490   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/fileformats/xtc -Imoleculekit/fileformats/xtc/include/ -Imoleculekit/fileformats/xtc/ -I/tmp/pip-build-env-cpcib7j5/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c moleculekit/fileformats/xtc/src/xdrfile_xtc.cpp -o build/temp.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/src/xdrfile_xtc.o
2024-06-05T13:56:48,762   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/fileformats/xtc -Imoleculekit/fileformats/xtc/include/ -Imoleculekit/fileformats/xtc/ -I/tmp/pip-build-env-cpcib7j5/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c moleculekit/fileformats/xtc/src/xtc.cpp -o build/temp.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/src/xtc.o
2024-06-05T13:56:49,571   moleculekit/fileformats/xtc/src/xtc.cpp: In function ‘void xtc_read_new(char*, float*, float*, float*, int*, int, int)’:
2024-06-05T13:56:49,571   moleculekit/fileformats/xtc/src/xtc.cpp:234:37: warning: comparison of integer expressions of different signedness: ‘uint64_t’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare]
2024-06-05T13:56:49,572     234 |                 for (aidx = 0; aidx < natoms; aidx++)
2024-06-05T13:56:49,573         |                                ~~~~~^~~~~~~~
2024-06-05T13:56:49,580   moleculekit/fileformats/xtc/src/xtc.cpp: In function ‘int xtc_write(char*, int, int, int*, float*, float*, float*)’:
2024-06-05T13:56:49,580   moleculekit/fileformats/xtc/src/xtc.cpp:436:23: warning: comparison of integer expressions of different signedness: ‘uint64_t’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare]
2024-06-05T13:56:49,581     436 |         for (f = 0; f < nframes; f++)
2024-06-05T13:56:49,582         |                     ~~^~~~~~~~~
2024-06-05T13:56:49,582   moleculekit/fileformats/xtc/src/xtc.cpp:451:31: warning: comparison of integer expressions of different signedness: ‘uint64_t’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare]
2024-06-05T13:56:49,583     451 |                 for (i = 0; i < natoms; i++)
2024-06-05T13:56:49,583         |                             ~~^~~~~~~~
2024-06-05T13:56:49,586   moleculekit/fileformats/xtc/src/xtc.cpp: In function ‘void xtc_read_frame(char*, float*, float*, float*, int*, int, int, int, int)’:
2024-06-05T13:56:49,586   moleculekit/fileformats/xtc/src/xtc.cpp:541:45: warning: comparison of integer expressions of different signedness: ‘uint64_t’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare]
2024-06-05T13:56:49,587     541 |                         for (aidx = 0; aidx < natoms; aidx++)
2024-06-05T13:56:49,588         |                                        ~~~~~^~~~~~~~
2024-06-05T13:56:49,590   moleculekit/fileformats/xtc/src/xtc.cpp:610:45: warning: comparison of integer expressions of different signedness: ‘uint64_t’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare]
2024-06-05T13:56:49,591     610 |                         for (aidx = 0; aidx < natoms; aidx++)
2024-06-05T13:56:49,591         |                                        ~~~~~^~~~~~~~
2024-06-05T13:56:50,511   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/fileformats/xtc -Imoleculekit/fileformats/xtc/include/ -Imoleculekit/fileformats/xtc/ -I/tmp/pip-build-env-cpcib7j5/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c moleculekit/fileformats/xtc/xtc.cpp -o build/temp.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/xtc.o
2024-06-05T13:56:50,817   In file included from /tmp/pip-build-env-cpcib7j5/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2024-06-05T13:56:50,818                    from /tmp/pip-build-env-cpcib7j5/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2024-06-05T13:56:50,818                    from /tmp/pip-build-env-cpcib7j5/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h:5,
2024-06-05T13:56:50,819                    from moleculekit/fileformats/xtc/xtc.cpp:1269:
2024-06-05T13:56:50,820   /tmp/pip-build-env-cpcib7j5/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2024-06-05T13:56:50,820      17 | #warning "Using deprecated NumPy API, disable it with " \
2024-06-05T13:56:50,821         |  ^~~~~~~
2024-06-05T13:57:14,846   arm-linux-gnueabihf-g++ -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/src/xdrfile.o build/temp.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/src/xdrfile_xtc.o build/temp.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/src/xtc.o build/temp.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/xtc.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/moleculekit/xtc.cpython-311-arm-linux-gnueabihf.so
2024-06-05T13:57:15,135   building 'moleculekit.trr' extension
2024-06-05T13:57:15,135   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/fileformats/xtc -Imoleculekit/fileformats/xtc/include/ -Imoleculekit/fileformats/xtc/ -I/tmp/pip-build-env-cpcib7j5/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c moleculekit/fileformats/xtc/src/xdr_seek.c -o build/temp.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/src/xdr_seek.o
2024-06-05T13:57:15,253   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/fileformats/xtc -Imoleculekit/fileformats/xtc/include/ -Imoleculekit/fileformats/xtc/ -I/tmp/pip-build-env-cpcib7j5/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c moleculekit/fileformats/xtc/src/xdrfile.cpp -o build/temp.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/src/xdrfile.o
2024-06-05T13:57:15,881   moleculekit/fileformats/xtc/src/xdrfile.cpp:66:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-06-05T13:57:15,882      66 |         "OK",
2024-06-05T13:57:15,883         |         ^~~~
2024-06-05T13:57:15,884   moleculekit/fileformats/xtc/src/xdrfile.cpp:67:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-06-05T13:57:15,884      67 |         "Header",
2024-06-05T13:57:15,885         |         ^~~~~~~~
2024-06-05T13:57:15,886   moleculekit/fileformats/xtc/src/xdrfile.cpp:68:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-06-05T13:57:15,887      68 |         "String",
2024-06-05T13:57:15,888         |         ^~~~~~~~
2024-06-05T13:57:15,888   moleculekit/fileformats/xtc/src/xdrfile.cpp:69:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-06-05T13:57:15,889      69 |         "Double",
2024-06-05T13:57:15,890         |         ^~~~~~~~
2024-06-05T13:57:15,890   moleculekit/fileformats/xtc/src/xdrfile.cpp:70:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-06-05T13:57:15,891      70 |         "Integer",
2024-06-05T13:57:15,892         |         ^~~~~~~~~
2024-06-05T13:57:15,892   moleculekit/fileformats/xtc/src/xdrfile.cpp:71:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-06-05T13:57:15,893      71 |         "Float",
2024-06-05T13:57:15,894         |         ^~~~~~~
2024-06-05T13:57:15,894   moleculekit/fileformats/xtc/src/xdrfile.cpp:72:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-06-05T13:57:15,895      72 |         "Unsigned integer",
2024-06-05T13:57:15,896         |         ^~~~~~~~~~~~~~~~~~
2024-06-05T13:57:15,897   moleculekit/fileformats/xtc/src/xdrfile.cpp:73:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-06-05T13:57:15,897      73 |         "Compressed 3D coordinate",
2024-06-05T13:57:15,897         |         ^~~~~~~~~~~~~~~~~~~~~~~~~~
2024-06-05T13:57:15,898   moleculekit/fileformats/xtc/src/xdrfile.cpp:74:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-06-05T13:57:15,898      74 |         "Closing file",
2024-06-05T13:57:15,899         |         ^~~~~~~~~~~~~~
2024-06-05T13:57:15,899   moleculekit/fileformats/xtc/src/xdrfile.cpp:75:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-06-05T13:57:15,900      75 |         "Magic number",
2024-06-05T13:57:15,900         |         ^~~~~~~~~~~~~~
2024-06-05T13:57:15,901   moleculekit/fileformats/xtc/src/xdrfile.cpp:76:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-06-05T13:57:15,901      76 |         "Not enough memory",
2024-06-05T13:57:15,902         |         ^~~~~~~~~~~~~~~~~~~
2024-06-05T13:57:15,902   moleculekit/fileformats/xtc/src/xdrfile.cpp:77:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-06-05T13:57:15,902      77 |         "End of file",
2024-06-05T13:57:15,903         |         ^~~~~~~~~~~~~
2024-06-05T13:57:15,904   moleculekit/fileformats/xtc/src/xdrfile.cpp:78:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-06-05T13:57:15,904      78 |         "File not found"
2024-06-05T13:57:15,905         |         ^~~~~~~~~~~~~~~~
2024-06-05T13:57:15,911   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘int sizeofint(int)’:
2024-06-05T13:57:15,912   moleculekit/fileformats/xtc/src/xdrfile.cpp:459:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-06-05T13:57:15,913     459 |     while (size >= num && num_of_bits < 32)
2024-06-05T13:57:15,913         |            ~~~~~^~~~~~
2024-06-05T13:57:15,915   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘int sizeofints(int, unsigned int*)’:
2024-06-05T13:57:15,915   moleculekit/fileformats/xtc/src/xdrfile.cpp:505:32: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-06-05T13:57:15,916     505 |     while (bytes[num_of_bytes] >= num)
2024-06-05T13:57:15,917         |            ~~~~~~~~~~~~~~~~~~~~^~~~~~
2024-06-05T13:57:15,920   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘void encodeints(int*, int, int, unsigned int*, unsigned int*)’:
2024-06-05T13:57:15,921   moleculekit/fileformats/xtc/src/xdrfile.cpp:614:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-06-05T13:57:15,921     614 |     if (num_of_bits >= num_of_bytes * 8)
2024-06-05T13:57:15,922         |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
2024-06-05T13:57:15,923   moleculekit/fileformats/xtc/src/xdrfile.cpp:616:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-06-05T13:57:15,923     616 |                 for (i = 0; i < num_of_bytes; i++)
2024-06-05T13:57:15,924         |                             ~~^~~~~~~~~~~~~~
2024-06-05T13:57:15,924   moleculekit/fileformats/xtc/src/xdrfile.cpp:624:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-06-05T13:57:15,925     624 |                 for (i = 0; i < num_of_bytes-1; i++)
2024-06-05T13:57:15,926         |                             ~~^~~~~~~~~~~~~~~~
2024-06-05T13:57:15,927   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘int decodebits(int*, int)’:
2024-06-05T13:57:15,928   moleculekit/fileformats/xtc/src/xdrfile.cpp:664:30: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-06-05T13:57:15,929     664 |                 if (lastbits < num_of_bits)
2024-06-05T13:57:15,930         |                     ~~~~~~~~~^~~~~~~~~~~~~
2024-06-05T13:57:15,934   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘int xdrfile_decompress_coord_float(float*, int*, float*, XDRFILE*)’:
2024-06-05T13:57:15,935   moleculekit/fileformats/xtc/src/xdrfile.cpp:785:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-06-05T13:57:15,935     785 |         if(size3>xfp->buf1size)
2024-06-05T13:57:15,935         |            ~~~~~^~~~~~~~~~~~~~
2024-06-05T13:57:15,938   moleculekit/fileformats/xtc/src/xdrfile.cpp:842:26: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-06-05T13:57:15,939     842 |         maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2024-06-05T13:57:15,940         |                          ^
2024-06-05T13:57:15,944   moleculekit/fileformats/xtc/src/xdrfile.cpp:932:45: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-06-05T13:57:15,945     932 |                                 if(countmjh >= size3 ) { return -1; }
2024-06-05T13:57:15,946         |                                    ~~~~~~~~~^~~~~~~~
2024-06-05T13:57:15,947   moleculekit/fileformats/xtc/src/xdrfile.cpp:935:45: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-06-05T13:57:15,947     935 |                                 if(countmjh >= size3 ) { return -1; }
2024-06-05T13:57:15,949         |                                    ~~~~~~~~~^~~~~~~~
2024-06-05T13:57:15,949   moleculekit/fileformats/xtc/src/xdrfile.cpp:938:45: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-06-05T13:57:15,950     938 |                                 if(countmjh >= size3 ) { return -1; }
2024-06-05T13:57:15,951         |                                    ~~~~~~~~~^~~~~~~~
2024-06-05T13:57:15,952   moleculekit/fileformats/xtc/src/xdrfile.cpp:945:45: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-06-05T13:57:15,953     945 |                                 if(countmjh >= size3 ) { return -1; }
2024-06-05T13:57:15,954         |                                    ~~~~~~~~~^~~~~~~~
2024-06-05T13:57:15,956   moleculekit/fileformats/xtc/src/xdrfile.cpp:948:45: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-06-05T13:57:15,956     948 |                                 if(countmjh >= size3 ) { return -1; }
2024-06-05T13:57:15,957         |                                    ~~~~~~~~~^~~~~~~~
2024-06-05T13:57:15,958   moleculekit/fileformats/xtc/src/xdrfile.cpp:951:45: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-06-05T13:57:15,959     951 |                                 if(countmjh >= size3 ) { return -1; }
2024-06-05T13:57:15,960         |                                    ~~~~~~~~~^~~~~~~~
2024-06-05T13:57:15,960   moleculekit/fileformats/xtc/src/xdrfile.cpp:756:24: warning: variable ‘minidx’ set but not used [-Wunused-but-set-variable]
2024-06-05T13:57:15,962     756 |         int smallidx,  minidx, maxidx;
2024-06-05T13:57:15,963         |                        ^~~~~~
2024-06-05T13:57:15,963   moleculekit/fileformats/xtc/src/xdrfile.cpp:759:32: warning: variable ‘larger’ set but not used [-Wunused-but-set-variable]
2024-06-05T13:57:15,964     759 |         int smallnum, smaller, larger, i, is_smaller, run;
2024-06-05T13:57:15,965         |                                ^~~~~~
2024-06-05T13:57:15,966   moleculekit/fileformats/xtc/src/xdrfile.cpp:763:13: warning: unused variable ‘errval’ [-Wunused-variable]
2024-06-05T13:57:15,967     763 |         int errval=1;
2024-06-05T13:57:15,967         |             ^~~~~~
2024-06-05T13:57:15,968   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘int xdrfile_compress_coord_float(float*, int, float, XDRFILE*)’:
2024-06-05T13:57:15,968   moleculekit/fileformats/xtc/src/xdrfile.cpp:1011:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-06-05T13:57:15,969    1011 |         if(size3>xfp->buf1size)
2024-06-05T13:57:15,970         |            ~~~~~^~~~~~~~~~~~~~
2024-06-05T13:57:15,970   moleculekit/fileformats/xtc/src/xdrfile.cpp:1068:41: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-06-05T13:57:15,971    1068 |                 countmjh++; if( countmjh> size3) { return -1; }
2024-06-05T13:57:15,971         |                                 ~~~~~~~~^~~~~~~
2024-06-05T13:57:15,972   moleculekit/fileformats/xtc/src/xdrfile.cpp:1084:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-06-05T13:57:15,973    1084 |           countmjh++; if( countmjh> size3) { return -1; }
2024-06-05T13:57:15,973         |                           ~~~~~~~~^~~~~~~
2024-06-05T13:57:15,974   moleculekit/fileformats/xtc/src/xdrfile.cpp:1098:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-06-05T13:57:15,974    1098 |           countmjh++; if( countmjh> size3) { return -1; }
2024-06-05T13:57:15,975         |                           ~~~~~~~~^~~~~~~
2024-06-05T13:57:15,976   moleculekit/fileformats/xtc/src/xdrfile.cpp:1137:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-06-05T13:57:15,976    1137 |         while (smallidx < LASTIDX && magicints[smallidx] < mindiff)
2024-06-05T13:57:15,977         |                         ^
2024-06-05T13:57:15,978   moleculekit/fileformats/xtc/src/xdrfile.cpp:1143:26: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-06-05T13:57:15,978    1143 |         maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2024-06-05T13:57:15,979         |                          ^
2024-06-05T13:57:15,984   moleculekit/fileformats/xtc/src/xdrfile.cpp:1275:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-06-05T13:57:15,985    1275 |         if(tmp==(unsigned int)buf2[0])
2024-06-05T13:57:15,985         |            ~~~^~~~~~~~~~~~~~~~~~~~~~~
2024-06-05T13:57:15,986   moleculekit/fileformats/xtc/src/xdrfile.cpp:1001:13: warning: variable ‘errval’ set but not used [-Wunused-but-set-variable]
2024-06-05T13:57:15,987    1001 |         int errval;
2024-06-05T13:57:15,987         |             ^~~~~~
2024-06-05T13:57:15,991   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘int xdrfile_decompress_coord_double(double*, int*, double*, XDRFILE*)’:
2024-06-05T13:57:15,991   moleculekit/fileformats/xtc/src/xdrfile.cpp:1316:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-06-05T13:57:15,992    1316 |         if(size3>xfp->buf1size)
2024-06-05T13:57:15,993         |            ~~~~~^~~~~~~~~~~~~~
2024-06-05T13:57:15,996   moleculekit/fileformats/xtc/src/xdrfile.cpp:1377:26: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-06-05T13:57:15,996    1377 |         maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2024-06-05T13:57:15,997         |                          ^
2024-06-05T13:57:16,001   moleculekit/fileformats/xtc/src/xdrfile.cpp:1289:32: warning: variable ‘minidx’ set but not used [-Wunused-but-set-variable]
2024-06-05T13:57:16,002    1289 |         int smallidx,  maxidx, minidx;
2024-06-05T13:57:16,003         |                                ^~~~~~
2024-06-05T13:57:16,004   moleculekit/fileformats/xtc/src/xdrfile.cpp:1292:32: warning: variable ‘larger’ set but not used [-Wunused-but-set-variable]
2024-06-05T13:57:16,005    1292 |         int smallnum, smaller, larger, i, is_smaller, run;
2024-06-05T13:57:16,005         |                                ^~~~~~
2024-06-05T13:57:16,006   moleculekit/fileformats/xtc/src/xdrfile.cpp:1297:13: warning: unused variable ‘errval’ [-Wunused-variable]
2024-06-05T13:57:16,006    1297 |         int errval=1;
2024-06-05T13:57:16,007         |             ^~~~~~
2024-06-05T13:57:16,008   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘int xdrfile_compress_coord_double(double*, int, double, XDRFILE*)’:
2024-06-05T13:57:16,009   moleculekit/fileformats/xtc/src/xdrfile.cpp:1513:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-06-05T13:57:16,009    1513 |         if(size3>xfp->buf1size) {
2024-06-05T13:57:16,010         |            ~~~~~^~~~~~~~~~~~~~
2024-06-05T13:57:16,016   moleculekit/fileformats/xtc/src/xdrfile.cpp:1628:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-06-05T13:57:16,016    1628 |         while (smallidx < LASTIDX && magicints[smallidx] < mindiff) {
2024-06-05T13:57:16,017         |                         ^
2024-06-05T13:57:16,017   moleculekit/fileformats/xtc/src/xdrfile.cpp:1633:26: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-06-05T13:57:16,018    1633 |         maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2024-06-05T13:57:16,019         |                          ^
2024-06-05T13:57:16,024   moleculekit/fileformats/xtc/src/xdrfile.cpp:1743:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-06-05T13:57:16,025    1743 |         if(tmp==(unsigned int)buf2[0])
2024-06-05T13:57:16,025         |            ~~~^~~~~~~~~~~~~~~~~~~~~~~
2024-06-05T13:57:16,026   moleculekit/fileformats/xtc/src/xdrfile.cpp:1504:13: warning: variable ‘errval’ set but not used [-Wunused-but-set-variable]
2024-06-05T13:57:16,027    1504 |         int errval=1;
2024-06-05T13:57:16,027         |             ^~~~~~
2024-06-05T13:57:18,860   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/fileformats/xtc -Imoleculekit/fileformats/xtc/include/ -Imoleculekit/fileformats/xtc/ -I/tmp/pip-build-env-cpcib7j5/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c moleculekit/fileformats/xtc/src/xdrfile_trr.c -o build/temp.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/src/xdrfile_trr.o
2024-06-05T13:57:18,962   moleculekit/fileformats/xtc/src/xdrfile_trr.c: In function ‘do_trnheader’:
2024-06-05T13:57:18,963   moleculekit/fileformats/xtc/src/xdrfile_trr.c:111:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare]
2024-06-05T13:57:18,963     111 |         if (slen != strlen(version)+1)
2024-06-05T13:57:18,964         |                  ^~
2024-06-05T13:57:18,964   moleculekit/fileformats/xtc/src/xdrfile_trr.c:121:46: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare]
2024-06-05T13:57:18,965     121 |         if (xdrfile_write_string(version,xd) != (strlen(version)+1) )
2024-06-05T13:57:18,966         |                                              ^~
2024-06-05T13:57:19,671   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/fileformats/xtc -Imoleculekit/fileformats/xtc/include/ -Imoleculekit/fileformats/xtc/ -I/tmp/pip-build-env-cpcib7j5/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c moleculekit/fileformats/xtc/trr.c -o build/temp.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/trr.o
2024-06-05T13:57:20,055   In file included from /tmp/pip-build-env-cpcib7j5/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2024-06-05T13:57:20,056                    from /tmp/pip-build-env-cpcib7j5/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2024-06-05T13:57:20,057                    from /tmp/pip-build-env-cpcib7j5/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h:5,
2024-06-05T13:57:20,057                    from moleculekit/fileformats/xtc/trr.c:1261:
2024-06-05T13:57:20,058   /tmp/pip-build-env-cpcib7j5/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2024-06-05T13:57:20,058      17 | #warning "Using deprecated NumPy API, disable it with " \
2024-06-05T13:57:20,059         |  ^~~~~~~
2024-06-05T13:57:20,841   moleculekit/fileformats/xtc/trr.c: In function ‘__pyx_pf_11moleculekit_3trr_17TRRTrajectoryFile_22_calc_len_and_offsets’:
2024-06-05T13:57:20,855   moleculekit/fileformats/xtc/trr.c:16352:37: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘Py_ssize_t’ {aka ‘int’} [-Wsign-compare]
2024-06-05T13:57:20,856   16352 |       __pyx_t_6 = (__pyx_v_n_frames == __pyx_t_14);
2024-06-05T13:57:20,857         |                                     ^~
2024-06-05T13:57:44,243   moleculekit/fileformats/xtc/trr.c: In function ‘__pyx_pw_11moleculekit_3trr_17TRRTrajectoryFile_17_write’:
2024-06-05T13:57:44,243   moleculekit/fileformats/xtc/trr.c:1163:40: warning: ‘__pyx_v_status’ may be used uninitialized [-Wmaybe-uninitialized]
2024-06-05T13:57:44,244    1163 |   #define PyInt_FromLong               PyLong_FromLong
2024-06-05T13:57:44,245         |                                        ^~~~~~~~~~~~~~~
2024-06-05T13:57:44,258   moleculekit/fileformats/xtc/trr.c:14260:7: note: ‘__pyx_v_status’ was declared here
2024-06-05T13:57:44,258   14260 |   int __pyx_v_status;
2024-06-05T13:57:44,259         |       ^~~~~~~~~~~~~~
2024-06-05T13:57:55,951   moleculekit/fileformats/xtc/trr.c: In function ‘__pyx_pf_11moleculekit_3trr_17TRRTrajectoryFile_12_read’:
2024-06-05T13:57:55,962   moleculekit/fileformats/xtc/trr.c:11559:19: warning: ‘__pyx_pybuffernd_forces.diminfo[2].shape’ may be used uninitialized [-Wmaybe-uninitialized]
2024-06-05T13:57:55,963   11559 |         } else if (unlikely(__pyx_t_29 >= __pyx_pybuffernd_forces.diminfo[2].shape)) __pyx_t_4 = 2;
2024-06-05T13:57:55,964         |                   ^
2024-06-05T13:57:55,972   moleculekit/fileformats/xtc/trr.c:10091:21: note: ‘__pyx_pybuffernd_forces.diminfo[2].shape’ was declared here
2024-06-05T13:57:55,973   10091 |   __Pyx_LocalBuf_ND __pyx_pybuffernd_forces;
2024-06-05T13:57:55,974         |                     ^~~~~~~~~~~~~~~~~~~~~~~
2024-06-05T13:57:55,983   moleculekit/fileformats/xtc/trr.c:11555:19: warning: ‘__pyx_pybuffernd_forces.diminfo[1].shape’ may be used uninitialized [-Wmaybe-uninitialized]
2024-06-05T13:57:55,984   11555 |         } else if (unlikely(__pyx_t_30 >= __pyx_pybuffernd_forces.diminfo[1].shape)) __pyx_t_4 = 1;
2024-06-05T13:57:55,984         |                   ^
2024-06-05T13:57:55,993   moleculekit/fileformats/xtc/trr.c:10091:21: note: ‘__pyx_pybuffernd_forces.diminfo[1].shape’ was declared here
2024-06-05T13:57:55,994   10091 |   __Pyx_LocalBuf_ND __pyx_pybuffernd_forces;
2024-06-05T13:57:55,994         |                     ^~~~~~~~~~~~~~~~~~~~~~~
2024-06-05T13:57:55,995   moleculekit/fileformats/xtc/trr.c:2509:95: warning: ‘__pyx_pybuffernd_forces.diminfo[0].strides’ may be used uninitialized [-Wmaybe-uninitialized]
2024-06-05T13:57:55,996    2509 | #define __Pyx_BufPtrCContig3d(type, buf, i0, s0, i1, s1, i2, s2) ((type)((char*)buf + i0 * s0 + i1 * s1) + i2)
2024-06-05T13:57:55,996         |                                                                                               ^
2024-06-05T13:57:56,004   moleculekit/fileformats/xtc/trr.c:10091:21: note: ‘__pyx_pybuffernd_forces.diminfo[0].strides’ was declared here
2024-06-05T13:57:56,005   10091 |   __Pyx_LocalBuf_ND __pyx_pybuffernd_forces;
2024-06-05T13:57:56,005         |                     ^~~~~~~~~~~~~~~~~~~~~~~
2024-06-05T13:57:56,015   moleculekit/fileformats/xtc/trr.c:11549:59: warning: ‘__pyx_pybuffernd_forces.diminfo[0].shape’ may be used uninitialized [-Wmaybe-uninitialized]
2024-06-05T13:57:56,016   11549 |           __pyx_t_28 += __pyx_pybuffernd_forces.diminfo[0].shape;
2024-06-05T13:57:56,016         |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~
2024-06-05T13:57:56,025   moleculekit/fileformats/xtc/trr.c:10091:21: note: ‘__pyx_pybuffernd_forces.diminfo[0].shape’ was declared here
2024-06-05T13:57:56,026   10091 |   __Pyx_LocalBuf_ND __pyx_pybuffernd_forces;
2024-06-05T13:57:56,026         |                     ^~~~~~~~~~~~~~~~~~~~~~~
2024-06-05T13:57:56,036   moleculekit/fileformats/xtc/trr.c:11502:19: warning: ‘__pyx_pybuffernd_vel.diminfo[2].shape’ may be used uninitialized [-Wmaybe-uninitialized]
2024-06-05T13:57:56,036   11502 |         } else if (unlikely(__pyx_t_30 >= __pyx_pybuffernd_vel.diminfo[2].shape)) __pyx_t_4 = 2;
2024-06-05T13:57:56,037         |                   ^
2024-06-05T13:57:56,045   moleculekit/fileformats/xtc/trr.c:10107:21: note: ‘__pyx_pybuffernd_vel.diminfo[2].shape’ was declared here
2024-06-05T13:57:56,046   10107 |   __Pyx_LocalBuf_ND __pyx_pybuffernd_vel;
2024-06-05T13:57:56,047         |                     ^~~~~~~~~~~~~~~~~~~~
2024-06-05T13:57:56,056   moleculekit/fileformats/xtc/trr.c:11498:19: warning: ‘__pyx_pybuffernd_vel.diminfo[1].shape’ may be used uninitialized [-Wmaybe-uninitialized]
2024-06-05T13:57:56,057   11498 |         } else if (unlikely(__pyx_t_29 >= __pyx_pybuffernd_vel.diminfo[1].shape)) __pyx_t_4 = 1;
2024-06-05T13:57:56,058         |                   ^
2024-06-05T13:57:56,066   moleculekit/fileformats/xtc/trr.c:10107:21: note: ‘__pyx_pybuffernd_vel.diminfo[1].shape’ was declared here
2024-06-05T13:57:56,067   10107 |   __Pyx_LocalBuf_ND __pyx_pybuffernd_vel;
2024-06-05T13:57:56,067         |                     ^~~~~~~~~~~~~~~~~~~~
2024-06-05T13:57:56,068   moleculekit/fileformats/xtc/trr.c:2509:95: warning: ‘__pyx_pybuffernd_vel.diminfo[0].strides’ may be used uninitialized [-Wmaybe-uninitialized]
2024-06-05T13:57:56,069    2509 | #define __Pyx_BufPtrCContig3d(type, buf, i0, s0, i1, s1, i2, s2) ((type)((char*)buf + i0 * s0 + i1 * s1) + i2)
2024-06-05T13:57:56,070         |                                                                                               ^
2024-06-05T13:57:56,077   moleculekit/fileformats/xtc/trr.c:10107:21: note: ‘__pyx_pybuffernd_vel.diminfo[0].strides’ was declared here
2024-06-05T13:57:56,078   10107 |   __Pyx_LocalBuf_ND __pyx_pybuffernd_vel;
2024-06-05T13:57:56,079         |                     ^~~~~~~~~~~~~~~~~~~~
2024-06-05T13:57:56,088   moleculekit/fileformats/xtc/trr.c:11492:56: warning: ‘__pyx_pybuffernd_vel.diminfo[0].shape’ may be used uninitialized [-Wmaybe-uninitialized]
2024-06-05T13:57:56,089   11492 |           __pyx_t_28 += __pyx_pybuffernd_vel.diminfo[0].shape;
2024-06-05T13:57:56,089         |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~
2024-06-05T13:57:56,098   moleculekit/fileformats/xtc/trr.c:10107:21: note: ‘__pyx_pybuffernd_vel.diminfo[0].shape’ was declared here
2024-06-05T13:57:56,099   10107 |   __Pyx_LocalBuf_ND __pyx_pybuffernd_vel;
2024-06-05T13:57:56,099         |                     ^~~~~~~~~~~~~~~~~~~~
2024-06-05T13:57:56,109   moleculekit/fileformats/xtc/trr.c:11891:17: warning: ‘__pyx_pybuffernd_xyz_buffer.diminfo[1].shape’ may be used uninitialized [-Wmaybe-uninitialized]
2024-06-05T13:57:56,110   11891 |       } else if (unlikely(__pyx_t_29 >= __pyx_pybuffernd_xyz_buffer.diminfo[1].shape)) __pyx_t_4 = 1;
2024-06-05T13:57:56,110         |                 ^
2024-06-05T13:57:56,119   moleculekit/fileformats/xtc/trr.c:10113:21: note: ‘__pyx_pybuffernd_xyz_buffer.diminfo[1].shape’ was declared here
2024-06-05T13:57:56,119   10113 |   __Pyx_LocalBuf_ND __pyx_pybuffernd_xyz_buffer;
2024-06-05T13:57:56,120         |                     ^~~~~~~~~~~~~~~~~~~~~~~~~~~
2024-06-05T13:57:56,129   moleculekit/fileformats/xtc/trr.c:11887:17: warning: ‘__pyx_pybuffernd_xyz_buffer.diminfo[0].shape’ may be used uninitialized [-Wmaybe-uninitialized]
2024-06-05T13:57:56,130   11887 |       } else if (unlikely(__pyx_t_30 >= __pyx_pybuffernd_xyz_buffer.diminfo[0].shape)) __pyx_t_4 = 0;
2024-06-05T13:57:56,130         |                 ^
2024-06-05T13:57:56,139   moleculekit/fileformats/xtc/trr.c:10113:21: note: ‘__pyx_pybuffernd_xyz_buffer.diminfo[0].shape’ was declared here
2024-06-05T13:57:56,140   10113 |   __Pyx_LocalBuf_ND __pyx_pybuffernd_xyz_buffer;
2024-06-05T13:57:56,140         |                     ^~~~~~~~~~~~~~~~~~~~~~~~~~~
2024-06-05T13:57:56,150   moleculekit/fileformats/xtc/trr.c:11732:19: warning: ‘__pyx_pybuffernd_vel_buffer.diminfo[1].shape’ may be used uninitialized [-Wmaybe-uninitialized]
2024-06-05T13:57:56,150   11732 |         } else if (unlikely(__pyx_t_35 >= __pyx_pybuffernd_vel_buffer.diminfo[1].shape)) __pyx_t_4 = 1;
2024-06-05T13:57:56,151         |                   ^
2024-06-05T13:57:56,160   moleculekit/fileformats/xtc/trr.c:10109:21: note: ‘__pyx_pybuffernd_vel_buffer.diminfo[1].shape’ was declared here
2024-06-05T13:57:56,160   10109 |   __Pyx_LocalBuf_ND __pyx_pybuffernd_vel_buffer;
2024-06-05T13:57:56,161         |                     ^~~~~~~~~~~~~~~~~~~~~~~~~~~
2024-06-05T13:57:56,170   moleculekit/fileformats/xtc/trr.c:11728:19: warning: ‘__pyx_pybuffernd_vel_buffer.diminfo[0].shape’ may be used uninitialized [-Wmaybe-uninitialized]
2024-06-05T13:57:56,171   11728 |         } else if (unlikely(__pyx_t_36 >= __pyx_pybuffernd_vel_buffer.diminfo[0].shape)) __pyx_t_4 = 0;
2024-06-05T13:57:56,172         |                   ^
2024-06-05T13:57:56,180   moleculekit/fileformats/xtc/trr.c:10109:21: note: ‘__pyx_pybuffernd_vel_buffer.diminfo[0].shape’ was declared here
2024-06-05T13:57:56,181   10109 |   __Pyx_LocalBuf_ND __pyx_pybuffernd_vel_buffer;
2024-06-05T13:57:56,182         |                     ^~~~~~~~~~~~~~~~~~~~~~~~~~~
2024-06-05T13:57:56,191   moleculekit/fileformats/xtc/trr.c:11784:19: warning: ‘__pyx_pybuffernd_forces_buffer.diminfo[1].shape’ may be used uninitialized [-Wmaybe-uninitialized]
2024-06-05T13:57:56,192   11784 |         } else if (unlikely(__pyx_t_36 >= __pyx_pybuffernd_forces_buffer.diminfo[1].shape)) __pyx_t_4 = 1;
2024-06-05T13:57:56,192         |                   ^
2024-06-05T13:57:56,200   moleculekit/fileformats/xtc/trr.c:10093:21: note: ‘__pyx_pybuffernd_forces_buffer.diminfo[1].shape’ was declared here
2024-06-05T13:57:56,201   10093 |   __Pyx_LocalBuf_ND __pyx_pybuffernd_forces_buffer;
2024-06-05T13:57:56,202         |                     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2024-06-05T13:57:56,211   moleculekit/fileformats/xtc/trr.c:11780:19: warning: ‘__pyx_pybuffernd_forces_buffer.diminfo[0].shape’ may be used uninitialized [-Wmaybe-uninitialized]
2024-06-05T13:57:56,212   11780 |         } else if (unlikely(__pyx_t_35 >= __pyx_pybuffernd_forces_buffer.diminfo[0].shape)) __pyx_t_4 = 0;
2024-06-05T13:57:56,212         |                   ^
2024-06-05T13:57:56,221   moleculekit/fileformats/xtc/trr.c:10093:21: note: ‘__pyx_pybuffernd_forces_buffer.diminfo[0].shape’ was declared here
2024-06-05T13:57:56,222   10093 |   __Pyx_LocalBuf_ND __pyx_pybuffernd_forces_buffer;
2024-06-05T13:57:56,223         |                     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2024-06-05T13:58:02,755   arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/src/xdr_seek.o build/temp.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/src/xdrfile.o build/temp.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/src/xdrfile_trr.o build/temp.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/trr.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/moleculekit/trr.cpython-311-arm-linux-gnueabihf.so
2024-06-05T13:58:02,923   building 'moleculekit.dcd' extension
2024-06-05T13:58:02,923   creating build/temp.linux-armv7l-cpython-311/moleculekit/fileformats/dcd
2024-06-05T13:58:02,924   creating build/temp.linux-armv7l-cpython-311/moleculekit/fileformats/dcd/src
2024-06-05T13:58:02,925   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/fileformats/dcd -Imoleculekit/fileformats/dcd/include/ -Imoleculekit/fileformats/dcd/ -I/tmp/pip-build-env-cpcib7j5/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c moleculekit/fileformats/dcd/dcd.c -o build/temp.linux-armv7l-cpython-311/moleculekit/fileformats/dcd/dcd.o
2024-06-05T13:58:03,320   In file included from /tmp/pip-build-env-cpcib7j5/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2024-06-05T13:58:03,320                    from /tmp/pip-build-env-cpcib7j5/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2024-06-05T13:58:03,321                    from /tmp/pip-build-env-cpcib7j5/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h:5,
2024-06-05T13:58:03,321                    from moleculekit/fileformats/dcd/dcd.c:1256:
2024-06-05T13:58:03,322   /tmp/pip-build-env-cpcib7j5/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2024-06-05T13:58:03,322      17 | #warning "Using deprecated NumPy API, disable it with " \
2024-06-05T13:58:03,323         |  ^~~~~~~
2024-06-05T13:58:04,603   In file included from moleculekit/fileformats/dcd/include/dcdplugin.h:1,
2024-06-05T13:58:04,604                    from moleculekit/fileformats/dcd/dcd.c:1262:
2024-06-05T13:58:04,605   moleculekit/fileformats/dcd/include/fastio.h:474:12: warning: ‘fio_write_str’ defined but not used [-Wunused-function]
2024-06-05T13:58:04,605     474 | static int fio_write_str(fio_fd fd, const char *str) {
2024-06-05T13:58:04,606         |            ^~~~~~~~~~~~~
2024-06-05T13:58:04,607   moleculekit/fileformats/dcd/include/fastio.h:470:12: warning: ‘fio_read_int32’ defined but not used [-Wunused-function]
2024-06-05T13:58:04,608     470 | static int fio_read_int32(fio_fd fd, int *i) {
2024-06-05T13:58:04,609         |            ^~~~~~~~~~~~~~
2024-06-05T13:58:04,609   moleculekit/fileformats/dcd/include/fastio.h:466:12: warning: ‘fio_write_int32’ defined but not used [-Wunused-function]
2024-06-05T13:58:04,610     466 | static int fio_write_int32(fio_fd fd, int i) {
2024-06-05T13:58:04,611         |            ^~~~~~~~~~~~~~~
2024-06-05T13:58:04,611   moleculekit/fileformats/dcd/include/fastio.h:457:19: warning: ‘fio_ftell’ defined but not used [-Wunused-function]
2024-06-05T13:58:04,612     457 | static fio_size_t fio_ftell(fio_fd fd) {
2024-06-05T13:58:04,613         |                   ^~~~~~~~~
2024-06-05T13:58:04,613   moleculekit/fileformats/dcd/include/fastio.h:450:19: warning: ‘fio_fseek’ defined but not used [-Wunused-function]
2024-06-05T13:58:04,615     450 | static fio_size_t fio_fseek(fio_fd fd, fio_size_t offset, int whence) {
2024-06-05T13:58:04,616         |                   ^~~~~~~~~
2024-06-05T13:58:04,616   moleculekit/fileformats/dcd/include/fastio.h:415:19: warning: ‘fio_readv’ defined but not used [-Wunused-function]
2024-06-05T13:58:04,617     415 | static fio_size_t fio_readv(fio_fd fd, const fio_iovec * iov, int iovcnt) {
2024-06-05T13:58:04,618         |                   ^~~~~~~~~
2024-06-05T13:58:04,619   moleculekit/fileformats/dcd/include/fastio.h:394:12: warning: ‘fio_fclose’ defined but not used [-Wunused-function]
2024-06-05T13:58:04,619     394 | static int fio_fclose(fio_fd fd) {
2024-06-05T13:58:04,619         |            ^~~~~~~~~~
2024-06-05T13:58:04,620   moleculekit/fileformats/dcd/include/fastio.h:366:12: warning: ‘fio_open’ defined but not used [-Wunused-function]
2024-06-05T13:58:04,620     366 | static int fio_open(const char *filename, int mode, fio_fd *fd) {
2024-06-05T13:58:04,621         |            ^~~~~~~~
2024-06-05T13:58:19,041   moleculekit/fileformats/dcd/dcd.c: In function ‘__pyx_pf_11moleculekit_3dcd_17DCDTrajectoryFile_18read’:
2024-06-05T13:58:19,041   moleculekit/fileformats/dcd/dcd.c:1158:40: warning: ‘__pyx_v_i’ may be used uninitialized [-Wmaybe-uninitialized]
2024-06-05T13:58:19,042    1158 |   #define PyInt_FromLong               PyLong_FromLong
2024-06-05T13:58:19,042         |                                        ^~~~~~~~~~~~~~~
2024-06-05T13:58:19,049   moleculekit/fileformats/dcd/dcd.c:8022:7: note: ‘__pyx_v_i’ was declared here
2024-06-05T13:58:19,050    8022 |   int __pyx_v_i;
2024-06-05T13:58:19,050         |       ^~~~~~~~~
2024-06-05T13:58:22,393   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/fileformats/dcd -Imoleculekit/fileformats/dcd/include/ -Imoleculekit/fileformats/dcd/ -I/tmp/pip-build-env-cpcib7j5/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c moleculekit/fileformats/dcd/src/dcdplugin.c -o build/temp.linux-armv7l-cpython-311/moleculekit/fileformats/dcd/src/dcdplugin.o
2024-06-05T13:58:22,614   moleculekit/fileformats/dcd/src/dcdplugin.c: In function ‘read_dcdheader’:
2024-06-05T13:58:22,615   moleculekit/fileformats/dcd/src/dcdplugin.c:150:55: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-06-05T13:58:22,616     150 |   else if (input_integer[0] == 84 && input_integer[1] == dcdcordmagic)
2024-06-05T13:58:22,616         |                                                       ^~
2024-06-05T13:58:22,617   moleculekit/fileformats/dcd/src/dcdplugin.c:173:54: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-06-05T13:58:22,618     173 |       if (input_integer[0] == 84 && input_integer[1] == dcdcordmagic)
2024-06-05T13:58:22,619         |                                                      ^~
2024-06-05T13:58:22,619   moleculekit/fileformats/dcd/src/dcdplugin.c:194:26: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-06-05T13:58:22,620     194 |     if (input_integer[0] != dcdcordmagic)
2024-06-05T13:58:22,621         |                          ^~
2024-06-05T13:58:22,621   moleculekit/fileformats/dcd/src/dcdplugin.c:409:47: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-06-05T13:58:22,622     409 |     if ((input_integer[0] + input_integer[1]) != ((*N) - (*NAMNF)) * 4)
2024-06-05T13:58:22,623         |                                               ^~
2024-06-05T13:58:22,623   moleculekit/fileformats/dcd/src/dcdplugin.c:428:47: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-06-05T13:58:22,624     428 |     if ((input_integer[0] + input_integer[1]) != ((*N) - (*NAMNF)) * 4)
2024-06-05T13:58:22,625         |                                               ^~
2024-06-05T13:58:22,627   moleculekit/fileformats/dcd/src/dcdplugin.c: In function ‘read_dcdstep’:
2024-06-05T13:58:22,628   moleculekit/fileformats/dcd/src/dcdplugin.c:651:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-06-05T13:58:22,629     651 |         if (tmpbuf[i] != sizeof(float) * N)
2024-06-05T13:58:22,629         |                       ^~
2024-06-05T13:58:22,630   moleculekit/fileformats/dcd/src/dcdplugin.c:659:49: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-06-05T13:58:22,631     659 |         if ((tmpbuf[2 * i] + tmpbuf[2 * i + 1]) != sizeof(float) * N)
2024-06-05T13:58:22,631         |                                                 ^~
2024-06-05T13:58:22,657   In file included from moleculekit/fileformats/dcd/src/dcdplugin.c:55:
2024-06-05T13:58:22,657   moleculekit/fileformats/dcd/include/endianswap.h: At top level:
2024-06-05T13:58:22,658   moleculekit/fileformats/dcd/include/endianswap.h:96:13: warning: ‘swap2_aligned’ defined but not used [-Wunused-function]
2024-06-05T13:58:22,658      96 | static void swap2_aligned(void *v, long ndata) {
2024-06-05T13:58:22,659         |             ^~~~~~~~~~~~~
2024-06-05T13:58:22,659   moleculekit/fileformats/dcd/include/endianswap.h:32:13: warning: ‘swap2_unaligned’ defined but not used [-Wunused-function]
2024-06-05T13:58:22,660      32 | static void swap2_unaligned(void *v, long ndata) {
2024-06-05T13:58:22,660         |             ^~~~~~~~~~~~~~~
2024-06-05T13:58:22,661   In file included from moleculekit/fileformats/dcd/src/dcdplugin.c:46:
2024-06-05T13:58:22,662   moleculekit/fileformats/dcd/include/fastio.h:474:12: warning: ‘fio_write_str’ defined but not used [-Wunused-function]
2024-06-05T13:58:22,662     474 | static int fio_write_str(fio_fd fd, const char *str) {
2024-06-05T13:58:22,663         |            ^~~~~~~~~~~~~
2024-06-05T13:58:22,663   moleculekit/fileformats/dcd/include/fastio.h:470:12: warning: ‘fio_read_int32’ defined but not used [-Wunused-function]
2024-06-05T13:58:22,664     470 | static int fio_read_int32(fio_fd fd, int *i) {
2024-06-05T13:58:22,665         |            ^~~~~~~~~~~~~~
2024-06-05T13:58:23,940   arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/moleculekit/fileformats/dcd/dcd.o build/temp.linux-armv7l-cpython-311/moleculekit/fileformats/dcd/src/dcdplugin.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/moleculekit/dcd.cpython-311-arm-linux-gnueabihf.so
2024-06-05T13:58:24,068   building 'moleculekit.binpos' extension
2024-06-05T13:58:24,069   creating build/temp.linux-armv7l-cpython-311/moleculekit/fileformats/binpos
2024-06-05T13:58:24,070   creating build/temp.linux-armv7l-cpython-311/moleculekit/fileformats/binpos/src
2024-06-05T13:58:24,070   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/fileformats/binpos -Imoleculekit/fileformats/binpos/include/ -Imoleculekit/fileformats/binpos/ -I/tmp/pip-build-env-cpcib7j5/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c moleculekit/fileformats/binpos/binpos.c -o build/temp.linux-armv7l-cpython-311/moleculekit/fileformats/binpos/binpos.o
2024-06-05T13:58:24,459   In file included from /tmp/pip-build-env-cpcib7j5/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2024-06-05T13:58:24,460                    from /tmp/pip-build-env-cpcib7j5/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2024-06-05T13:58:24,461                    from /tmp/pip-build-env-cpcib7j5/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h:5,
2024-06-05T13:58:24,461                    from moleculekit/fileformats/binpos/binpos.c:1256:
2024-06-05T13:58:24,462   /tmp/pip-build-env-cpcib7j5/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2024-06-05T13:58:24,463      17 | #warning "Using deprecated NumPy API, disable it with " \
2024-06-05T13:58:24,463         |  ^~~~~~~
2024-06-05T13:58:38,951   In function ‘__pyx_pf_11moleculekit_6binpos_20BINPOSTrajectoryFile_6_read’,
2024-06-05T13:58:38,952       inlined from ‘__pyx_pw_11moleculekit_6binpos_20BINPOSTrajectoryFile_7_read’ at moleculekit/fileformats/binpos/binpos.c:7504:13:
2024-06-05T13:58:38,959   moleculekit/fileformats/binpos/binpos.c:8045:6: warning: ‘__pyx_v_status’ may be used uninitialized [-Wmaybe-uninitialized]
2024-06-05T13:58:38,959    8045 |   if (__pyx_t_1) {
2024-06-05T13:58:38,960         |      ^
2024-06-05T13:58:38,960   moleculekit/fileformats/binpos/binpos.c: In function ‘__pyx_pw_11moleculekit_6binpos_20BINPOSTrajectoryFile_7_read’:
2024-06-05T13:58:38,966   moleculekit/fileformats/binpos/binpos.c:7522:7: note: ‘__pyx_v_status’ was declared here
2024-06-05T13:58:38,966    7522 |   int __pyx_v_status;
2024-06-05T13:58:38,967         |       ^~~~~~~~~~~~~~
2024-06-05T13:58:38,967   moleculekit/fileformats/binpos/binpos.c:1158:40: warning: ‘__pyx_v_i’ may be used uninitialized [-Wmaybe-uninitialized]
2024-06-05T13:58:38,968    1158 |   #define PyInt_FromLong               PyLong_FromLong
2024-06-05T13:58:38,968         |                                        ^~~~~~~~~~~~~~~
2024-06-05T13:58:38,974   moleculekit/fileformats/binpos/binpos.c:7519:7: note: ‘__pyx_v_i’ was declared here
2024-06-05T13:58:38,975    7519 |   int __pyx_v_i;
2024-06-05T13:58:38,976         |       ^~~~~~~~~
2024-06-05T13:58:42,425   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/fileformats/binpos -Imoleculekit/fileformats/binpos/include/ -Imoleculekit/fileformats/binpos/ -I/tmp/pip-build-env-cpcib7j5/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c moleculekit/fileformats/binpos/src/binposplugin.c -o build/temp.linux-armv7l-cpython-311/moleculekit/fileformats/binpos/src/binposplugin.o
2024-06-05T13:58:42,757   arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/moleculekit/fileformats/binpos/binpos.o build/temp.linux-armv7l-cpython-311/moleculekit/fileformats/binpos/src/binposplugin.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/moleculekit/binpos.cpython-311-arm-linux-gnueabihf.so
2024-06-05T13:58:42,885   building 'moleculekit.tmalign' extension
2024-06-05T13:58:42,886   creating build/temp.linux-armv7l-cpython-311/moleculekit/tmalign
2024-06-05T13:58:42,886   creating build/temp.linux-armv7l-cpython-311/moleculekit/tmalign/src
2024-06-05T13:58:42,887   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/tmalign -Imoleculekit/tmalign/include/ -Imoleculekit/tmalign/ -I/tmp/pip-build-env-cpcib7j5/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c moleculekit/tmalign/src/TMAlign.cpp -o build/temp.linux-armv7l-cpython-311/moleculekit/tmalign/src/TMAlign.o -w
2024-06-05T13:59:16,656   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/tmalign -Imoleculekit/tmalign/include/ -Imoleculekit/tmalign/ -I/tmp/pip-build-env-cpcib7j5/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c moleculekit/tmalign/tmalign_util.cpp -o build/temp.linux-armv7l-cpython-311/moleculekit/tmalign/tmalign_util.o -w
2024-06-05T13:59:39,217   In file included from /usr/include/c++/12/vector:70,
2024-06-05T13:59:39,218                    from moleculekit/tmalign/tmalign_util.cpp:1280:
2024-06-05T13:59:39,218   /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator<double>]’:
2024-06-05T13:59:39,219   /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector<double>::iterator’ changed in GCC 7.1
2024-06-05T13:59:39,220     439 |       vector<_Tp, _Alloc>::
2024-06-05T13:59:39,221         |       ^~~~~~~~~~~~~~~~~~~
2024-06-05T13:59:40,021   In file included from /usr/include/c++/12/vector:64:
2024-06-05T13:59:40,022   In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]’,
2024-06-05T13:59:40,022       inlined from ‘PyObject* __pyx_pf_11moleculekit_7tmalign_tmalign(PyObject*, __Pyx_memviewslice, __Pyx_memviewslice, std::string, std::string)’ at moleculekit/tmalign/tmalign_util.cpp:20779:32,
2024-06-05T13:59:40,023       inlined from ‘PyObject* __pyx_pw_11moleculekit_7tmalign_1tmalign(PyObject*, PyObject* const*, Py_ssize_t, PyObject*)’ at moleculekit/tmalign/tmalign_util.cpp:20264:52:
2024-06-05T13:59:40,023   /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
2024-06-05T13:59:40,024    1287 |           _M_realloc_insert(end(), __x);
2024-06-05T13:59:40,025         |           ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2024-06-05T13:59:40,025   In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]’,
2024-06-05T13:59:40,026       inlined from ‘PyObject* __pyx_pf_11moleculekit_7tmalign_tmalign(PyObject*, __Pyx_memviewslice, __Pyx_memviewslice, std::string, std::string)’ at moleculekit/tmalign/tmalign_util.cpp:20793:33,
2024-06-05T13:59:40,026       inlined from ‘PyObject* __pyx_pw_11moleculekit_7tmalign_1tmalign(PyObject*, PyObject* const*, Py_ssize_t, PyObject*)’ at moleculekit/tmalign/tmalign_util.cpp:20264:52:
2024-06-05T13:59:40,027   /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
2024-06-05T13:59:40,027    1287 |           _M_realloc_insert(end(), __x);
2024-06-05T13:59:40,028         |           ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2024-06-05T13:59:40,029   In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]’,
2024-06-05T13:59:40,029       inlined from ‘PyObject* __pyx_pf_11moleculekit_7tmalign_tmalign(PyObject*, __Pyx_memviewslice, __Pyx_memviewslice, std::string, std::string)’ at moleculekit/tmalign/tmalign_util.cpp:20878:34,
2024-06-05T13:59:40,030       inlined from ‘PyObject* __pyx_pw_11moleculekit_7tmalign_1tmalign(PyObject*, PyObject* const*, Py_ssize_t, PyObject*)’ at moleculekit/tmalign/tmalign_util.cpp:20264:52:
2024-06-05T13:59:40,031   /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
2024-06-05T13:59:40,031    1287 |           _M_realloc_insert(end(), __x);
2024-06-05T13:59:40,032         |           ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2024-06-05T13:59:42,386   arm-linux-gnueabihf-g++ -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/moleculekit/tmalign/src/TMAlign.o build/temp.linux-armv7l-cpython-311/moleculekit/tmalign/tmalign_util.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/moleculekit/tmalign.cpython-311-arm-linux-gnueabihf.so
2024-06-05T13:59:42,774   UPDATING build/lib.linux-armv7l-cpython-311/moleculekit/_version.py
2024-06-05T13:59:42,775   set build/lib.linux-armv7l-cpython-311/moleculekit/_version.py to '1.8.33'
2024-06-05T13:59:42,775   installing to build/bdist.linux-armv7l/wheel
2024-06-05T13:59:42,776   running install
2024-06-05T13:59:42,799   running install_lib
2024-06-05T13:59:42,805   creating build/bdist.linux-armv7l
2024-06-05T13:59:42,806   creating build/bdist.linux-armv7l/wheel
2024-06-05T13:59:42,808   creating build/bdist.linux-armv7l/wheel/moleculekit
2024-06-05T13:59:42,810   copying build/lib.linux-armv7l-cpython-311/moleculekit/version.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-06-05T13:59:42,812   copying build/lib.linux-armv7l-cpython-311/moleculekit/config.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-06-05T13:59:42,814   copying build/lib.linux-armv7l-cpython-311/moleculekit/atomselect_utils.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2024-06-05T13:59:42,840   copying build/lib.linux-armv7l-cpython-311/moleculekit/opm.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-06-05T13:59:42,843   copying build/lib.linux-armv7l-cpython-311/moleculekit/tmalign.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2024-06-05T13:59:42,893   creating build/bdist.linux-armv7l/wheel/moleculekit/atomselect
2024-06-05T13:59:42,894   copying build/lib.linux-armv7l-cpython-311/moleculekit/atomselect/analyze.py -> build/bdist.linux-armv7l/wheel/moleculekit/atomselect
2024-06-05T13:59:42,896   copying build/lib.linux-armv7l-cpython-311/moleculekit/atomselect/languageparser.py -> build/bdist.linux-armv7l/wheel/moleculekit/atomselect
2024-06-05T13:59:42,899   copying build/lib.linux-armv7l-cpython-311/moleculekit/atomselect/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/atomselect
2024-06-05T13:59:42,900   copying build/lib.linux-armv7l-cpython-311/moleculekit/atomselect/atomselect.py -> build/bdist.linux-armv7l/wheel/moleculekit/atomselect
2024-06-05T13:59:42,902   copying build/lib.linux-armv7l-cpython-311/moleculekit/readers.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-06-05T13:59:42,907   creating build/bdist.linux-armv7l/wheel/moleculekit/occupancy_utils
2024-06-05T13:59:42,908   copying build/lib.linux-armv7l-cpython-311/moleculekit/occupancy_utils/occupancy_utils.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/occupancy_utils
2024-06-05T13:59:42,911   copying build/lib.linux-armv7l-cpython-311/moleculekit/occupancy_utils/occupancy_utils.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/occupancy_utils
2024-06-05T13:59:42,929   creating build/bdist.linux-armv7l/wheel/moleculekit/ply
2024-06-05T13:59:42,930   copying build/lib.linux-armv7l-cpython-311/moleculekit/ply/yacc.py -> build/bdist.linux-armv7l/wheel/moleculekit/ply
2024-06-05T13:59:42,934   copying build/lib.linux-armv7l-cpython-311/moleculekit/ply/lex.py -> build/bdist.linux-armv7l/wheel/moleculekit/ply
2024-06-05T13:59:42,937   copying build/lib.linux-armv7l-cpython-311/moleculekit/ply/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/ply
2024-06-05T13:59:42,939   creating build/bdist.linux-armv7l/wheel/moleculekit/pdbx
2024-06-05T13:59:42,941   creating build/bdist.linux-armv7l/wheel/moleculekit/pdbx/tests
2024-06-05T13:59:42,942   copying build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/tests/PdbxReadWriteTests.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/tests
2024-06-05T13:59:42,946   copying build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/tests/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/tests
2024-06-05T13:59:42,947   copying build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/tests/PdbxWriterTests.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/tests
2024-06-05T13:59:42,950   copying build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/tests/PdbxReaderTests.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/tests
2024-06-05T13:59:42,953   creating build/bdist.linux-armv7l/wheel/moleculekit/pdbx/writer
2024-06-05T13:59:42,954   copying build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/writer/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/writer
2024-06-05T13:59:42,955   copying build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/writer/PdbxWriter.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/writer
2024-06-05T13:59:42,958   copying build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx
2024-06-05T13:59:42,960   creating build/bdist.linux-armv7l/wheel/moleculekit/pdbx/reader
2024-06-05T13:59:42,962   copying build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/reader/PdbxParser.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/reader
2024-06-05T13:59:42,965   copying build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/reader/PdbxReader.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/reader
2024-06-05T13:59:42,968   copying build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/reader/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/reader
2024-06-05T13:59:42,970   copying build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/reader/PdbxContainers.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/reader
2024-06-05T13:59:42,972   copying build/lib.linux-armv7l-cpython-311/moleculekit/pymolgraphics.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-06-05T13:59:42,974   copying build/lib.linux-armv7l-cpython-311/moleculekit/home.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-06-05T13:59:42,976   copying build/lib.linux-armv7l-cpython-311/moleculekit/viewer.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-06-05T13:59:42,979   copying build/lib.linux-armv7l-cpython-311/moleculekit/_version.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-06-05T13:59:42,980   copying build/lib.linux-armv7l-cpython-311/moleculekit/xtc.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2024-06-05T13:59:43,001   copying build/lib.linux-armv7l-cpython-311/moleculekit/occupancy_utils.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2024-06-05T13:59:43,018   copying build/lib.linux-armv7l-cpython-311/moleculekit/periodictable.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-06-05T13:59:43,020   copying build/lib.linux-armv7l-cpython-311/moleculekit/cython_utils.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2024-06-05T13:59:43,043   copying build/lib.linux-armv7l-cpython-311/moleculekit/trr.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2024-06-05T13:59:43,066   copying build/lib.linux-armv7l-cpython-311/moleculekit/logging.ini -> build/bdist.linux-armv7l/wheel/moleculekit
2024-06-05T13:59:43,068   creating build/bdist.linux-armv7l/wheel/moleculekit/projections
2024-06-05T13:59:43,069   copying build/lib.linux-armv7l-cpython-311/moleculekit/projections/metricplumed2.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2024-06-05T13:59:43,072   copying build/lib.linux-armv7l-cpython-311/moleculekit/projections/metricrmsd.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2024-06-05T13:59:43,074   copying build/lib.linux-armv7l-cpython-311/moleculekit/projections/metriccoordinate.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2024-06-05T13:59:43,076   copying build/lib.linux-armv7l-cpython-311/moleculekit/projections/metricsphericalcoordinate.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2024-06-05T13:59:43,078   copying build/lib.linux-armv7l-cpython-311/moleculekit/projections/metricfluctuation.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2024-06-05T13:59:43,081   copying build/lib.linux-armv7l-cpython-311/moleculekit/projections/metricdihedral.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2024-06-05T13:59:43,083   copying build/lib.linux-armv7l-cpython-311/moleculekit/projections/metricdistance.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2024-06-05T13:59:43,086   copying build/lib.linux-armv7l-cpython-311/moleculekit/projections/metricsasa.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2024-06-05T13:59:43,089   copying build/lib.linux-armv7l-cpython-311/moleculekit/projections/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2024-06-05T13:59:43,090   copying build/lib.linux-armv7l-cpython-311/moleculekit/projections/metrictmscore.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2024-06-05T13:59:43,092   copying build/lib.linux-armv7l-cpython-311/moleculekit/projections/metricgyration.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2024-06-05T13:59:43,094   copying build/lib.linux-armv7l-cpython-311/moleculekit/projections/util.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2024-06-05T13:59:43,096   copying build/lib.linux-armv7l-cpython-311/moleculekit/projections/metricshell.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2024-06-05T13:59:43,099   copying build/lib.linux-armv7l-cpython-311/moleculekit/projections/projection.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2024-06-05T13:59:43,100   copying build/lib.linux-armv7l-cpython-311/moleculekit/projections/metricsecondarystructure.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2024-06-05T13:59:43,103   copying build/lib.linux-armv7l-cpython-311/moleculekit/vmdgraphics.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-06-05T13:59:43,105   copying build/lib.linux-armv7l-cpython-311/moleculekit/bondguesser.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-06-05T13:59:43,107   copying build/lib.linux-armv7l-cpython-311/moleculekit/molecule.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-06-05T13:59:43,111   copying build/lib.linux-armv7l-cpython-311/moleculekit/binpos.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2024-06-05T13:59:43,123   copying build/lib.linux-armv7l-cpython-311/moleculekit/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-06-05T13:59:43,125   copying build/lib.linux-armv7l-cpython-311/moleculekit/distance.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-06-05T13:59:43,127   creating build/bdist.linux-armv7l/wheel/moleculekit/tools
2024-06-05T13:59:43,129   copying build/lib.linux-armv7l-cpython-311/moleculekit/tools/docking.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2024-06-05T13:59:43,131   copying build/lib.linux-armv7l-cpython-311/moleculekit/tools/moleculechecks.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2024-06-05T13:59:43,134   copying build/lib.linux-armv7l-cpython-311/moleculekit/tools/modelling.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2024-06-05T13:59:43,136   copying build/lib.linux-armv7l-cpython-311/moleculekit/tools/sequencestructuralalignment.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2024-06-05T13:59:43,139   copying build/lib.linux-armv7l-cpython-311/moleculekit/tools/detect.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2024-06-05T13:59:43,142   copying build/lib.linux-armv7l-cpython-311/moleculekit/tools/autosegment.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2024-06-05T13:59:43,144   copying build/lib.linux-armv7l-cpython-311/moleculekit/tools/atomtyper.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2024-06-05T13:59:43,147   copying build/lib.linux-armv7l-cpython-311/moleculekit/tools/hhblitsprofile.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2024-06-05T13:59:43,149   copying build/lib.linux-armv7l-cpython-311/moleculekit/tools/voxeldescriptors.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2024-06-05T13:59:43,152   creating build/bdist.linux-armv7l/wheel/moleculekit/tools/obabel_tools
2024-06-05T13:59:43,154   copying build/lib.linux-armv7l-cpython-311/moleculekit/tools/obabel_tools/obabel_cli.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools/obabel_tools
2024-06-05T13:59:43,156   copying build/lib.linux-armv7l-cpython-311/moleculekit/tools/obabel_tools/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools/obabel_tools
2024-06-05T13:59:43,158   copying build/lib.linux-armv7l-cpython-311/moleculekit/tools/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2024-06-05T13:59:43,160   copying build/lib.linux-armv7l-cpython-311/moleculekit/tools/graphalignment.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2024-06-05T13:59:43,163   copying build/lib.linux-armv7l-cpython-311/moleculekit/tools/crystalpacking.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2024-06-05T13:59:43,166   copying build/lib.linux-armv7l-cpython-311/moleculekit/tools/preparation.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2024-06-05T13:59:43,172   copying build/lib.linux-armv7l-cpython-311/moleculekit/tools/preparation_customres.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2024-06-05T13:59:43,175   creating build/bdist.linux-armv7l/wheel/moleculekit/distance_utils
2024-06-05T13:59:43,176   copying build/lib.linux-armv7l-cpython-311/moleculekit/distance_utils/distance_utils.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/distance_utils
2024-06-05T13:59:43,179   copying build/lib.linux-armv7l-cpython-311/moleculekit/distance_utils/distance_utils.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/distance_utils
2024-06-05T13:59:43,205   creating build/bdist.linux-armv7l/wheel/moleculekit/interactions
2024-06-05T13:59:43,206   creating build/bdist.linux-armv7l/wheel/moleculekit/interactions/hbonds
2024-06-05T13:59:43,207   copying build/lib.linux-armv7l-cpython-311/moleculekit/interactions/hbonds/hbonds.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/hbonds
2024-06-05T13:59:43,210   copying build/lib.linux-armv7l-cpython-311/moleculekit/interactions/hbonds/hbonds.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/hbonds
2024-06-05T13:59:43,230   copying build/lib.linux-armv7l-cpython-311/moleculekit/interactions/interactions.py -> build/bdist.linux-armv7l/wheel/moleculekit/interactions
2024-06-05T13:59:43,233   creating build/bdist.linux-armv7l/wheel/moleculekit/interactions/sigmahole
2024-06-05T13:59:43,234   copying build/lib.linux-armv7l-cpython-311/moleculekit/interactions/sigmahole/sigmahole.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/sigmahole
2024-06-05T13:59:43,236   copying build/lib.linux-armv7l-cpython-311/moleculekit/interactions/sigmahole/sigmahole.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/sigmahole
2024-06-05T13:59:43,256   copying build/lib.linux-armv7l-cpython-311/moleculekit/interactions/pipi.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit/interactions
2024-06-05T13:59:43,276   copying build/lib.linux-armv7l-cpython-311/moleculekit/interactions/sigmahole.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit/interactions
2024-06-05T13:59:43,299   creating build/bdist.linux-armv7l/wheel/moleculekit/interactions/cationpi
2024-06-05T13:59:43,300   copying build/lib.linux-armv7l-cpython-311/moleculekit/interactions/cationpi/cationpi.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/cationpi
2024-06-05T13:59:43,303   copying build/lib.linux-armv7l-cpython-311/moleculekit/interactions/cationpi/cationpi.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/cationpi
2024-06-05T13:59:43,322   copying build/lib.linux-armv7l-cpython-311/moleculekit/interactions/cationpi.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit/interactions
2024-06-05T13:59:43,342   copying build/lib.linux-armv7l-cpython-311/moleculekit/interactions/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/interactions
2024-06-05T13:59:43,345   creating build/bdist.linux-armv7l/wheel/moleculekit/interactions/pipi
2024-06-05T13:59:43,345   copying build/lib.linux-armv7l-cpython-311/moleculekit/interactions/pipi/pipi.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/pipi
2024-06-05T13:59:43,367   copying build/lib.linux-armv7l-cpython-311/moleculekit/interactions/pipi/pipi.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/pipi
2024-06-05T13:59:43,369   copying build/lib.linux-armv7l-cpython-311/moleculekit/interactions/hbonds.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit/interactions
2024-06-05T13:59:43,390   copying build/lib.linux-armv7l-cpython-311/moleculekit/dcd.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2024-06-05T13:59:43,403   copying build/lib.linux-armv7l-cpython-311/moleculekit/vmd_wrapper -> build/bdist.linux-armv7l/wheel/moleculekit
2024-06-05T13:59:43,406   creating build/bdist.linux-armv7l/wheel/moleculekit/cython_utils
2024-06-05T13:59:43,407   copying build/lib.linux-armv7l-cpython-311/moleculekit/cython_utils/cython_utils.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/cython_utils
2024-06-05T13:59:43,427   copying build/lib.linux-armv7l-cpython-311/moleculekit/cython_utils/cython_utils.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/cython_utils
2024-06-05T13:59:43,429   creating build/bdist.linux-armv7l/wheel/moleculekit/bondguesser_utils
2024-06-05T13:59:43,430   copying build/lib.linux-armv7l-cpython-311/moleculekit/bondguesser_utils/bondguesser_utils.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/bondguesser_utils
2024-06-05T13:59:43,432   copying build/lib.linux-armv7l-cpython-311/moleculekit/bondguesser_utils/bondguesser_utils.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/bondguesser_utils
2024-06-05T13:59:43,455   copying build/lib.linux-armv7l-cpython-311/moleculekit/distance_utils.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2024-06-05T13:59:43,480   copying build/lib.linux-armv7l-cpython-311/moleculekit/rdkitintegration.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-06-05T13:59:43,483   copying build/lib.linux-armv7l-cpython-311/moleculekit/bondguesser_utils.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2024-06-05T13:59:43,502   copying build/lib.linux-armv7l-cpython-311/moleculekit/dihedral.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-06-05T13:59:43,504   copying build/lib.linux-armv7l-cpython-311/moleculekit/util.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-06-05T13:59:43,507   creating build/bdist.linux-armv7l/wheel/moleculekit/tmalign
2024-06-05T13:59:43,508   copying build/lib.linux-armv7l-cpython-311/moleculekit/tmalign/tmalignlib.pxd -> build/bdist.linux-armv7l/wheel/moleculekit/tmalign
2024-06-05T13:59:43,511   creating build/bdist.linux-armv7l/wheel/moleculekit/tmalign/include
2024-06-05T13:59:43,512   copying build/lib.linux-armv7l-cpython-311/moleculekit/tmalign/include/TMAlign.h -> build/bdist.linux-armv7l/wheel/moleculekit/tmalign/include
2024-06-05T13:59:43,514   copying build/lib.linux-armv7l-cpython-311/moleculekit/tmalign/tmalign_util.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/tmalign
2024-06-05T13:59:43,517   creating build/bdist.linux-armv7l/wheel/moleculekit/tmalign/src
2024-06-05T13:59:43,518   copying build/lib.linux-armv7l-cpython-311/moleculekit/tmalign/src/TMAlign.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/tmalign/src
2024-06-05T13:59:43,525   copying build/lib.linux-armv7l-cpython-311/moleculekit/tmalign/tmalign_util.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/tmalign
2024-06-05T13:59:43,545   creating build/bdist.linux-armv7l/wheel/moleculekit/wrapping
2024-06-05T13:59:43,546   copying build/lib.linux-armv7l-cpython-311/moleculekit/wrapping/wrapping.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/wrapping
2024-06-05T13:59:43,548   copying build/lib.linux-armv7l-cpython-311/moleculekit/wrapping/wrapping.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/wrapping
2024-06-05T13:59:43,569   copying build/lib.linux-armv7l-cpython-311/moleculekit/align.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-06-05T13:59:43,571   creating build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2024-06-05T13:59:43,572   copying build/lib.linux-armv7l-cpython-311/moleculekit/smallmol/smallmollib.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2024-06-05T13:59:43,575   copying build/lib.linux-armv7l-cpython-311/moleculekit/smallmol/test_smallmol.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2024-06-05T13:59:43,577   copying build/lib.linux-armv7l-cpython-311/moleculekit/smallmol/smallmolcdp.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2024-06-05T13:59:43,580   copying build/lib.linux-armv7l-cpython-311/moleculekit/smallmol/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2024-06-05T13:59:43,582   creating build/bdist.linux-armv7l/wheel/moleculekit/smallmol/tools
2024-06-05T13:59:43,583   copying build/lib.linux-armv7l-cpython-311/moleculekit/smallmol/tools/clustering.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol/tools
2024-06-05T13:59:43,585   copying build/lib.linux-armv7l-cpython-311/moleculekit/smallmol/tools/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol/tools
2024-06-05T13:59:43,587   copying build/lib.linux-armv7l-cpython-311/moleculekit/smallmol/tools/test_tools.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol/tools
2024-06-05T13:59:43,589   copying build/lib.linux-armv7l-cpython-311/moleculekit/smallmol/tools/restrainedembed.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol/tools
2024-06-05T13:59:43,591   copying build/lib.linux-armv7l-cpython-311/moleculekit/smallmol/test_smallmollib.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2024-06-05T13:59:43,593   copying build/lib.linux-armv7l-cpython-311/moleculekit/smallmol/util.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2024-06-05T13:59:43,595   copying build/lib.linux-armv7l-cpython-311/moleculekit/smallmol/smallmol.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2024-06-05T13:59:43,598   copying build/lib.linux-armv7l-cpython-311/moleculekit/writers.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-06-05T13:59:43,602   creating build/bdist.linux-armv7l/wheel/moleculekit/share
2024-06-05T13:59:43,603   creating build/bdist.linux-armv7l/wheel/moleculekit/share/atomselect
2024-06-05T13:59:43,604   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/atomselect/atomselect.json -> build/bdist.linux-armv7l/wheel/moleculekit/share/atomselect
2024-06-05T13:59:43,606   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/backbone.cif -> build/bdist.linux-armv7l/wheel/moleculekit/share
2024-06-05T13:59:43,608   creating build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr
2024-06-05T13:59:43,612   creating build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-05T13:59:43,613   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/TRO.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-05T13:59:43,615   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/BB8.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-05T13:59:43,616   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/ORM.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-05T13:59:43,618   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/P1L.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-05T13:59:43,620   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/4PH.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-05T13:59:43,622   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/HHK.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-05T13:59:43,624   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/I2M.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-05T13:59:43,626   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/KYN.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-05T13:59:43,627   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/YNM.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-05T13:59:43,629   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/CCS.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-05T13:59:43,631   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/M3L.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-05T13:59:43,633   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/MLZ.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-05T13:59:43,635   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/DPP.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-05T13:59:43,637   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/ALY.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-05T13:59:43,639   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/ESC.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-05T13:59:43,640   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/IML.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-05T13:59:43,642   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/I2M.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-05T13:59:43,644   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/BTK.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-05T13:59:43,646   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/CSP.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-05T13:59:43,647   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/0A1.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-05T13:59:43,649   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/IML.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-05T13:59:43,651   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/0AF.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-05T13:59:43,653   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/5JP.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-05T13:59:43,654   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/LYZ.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-05T13:59:43,656   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/LYZ.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-05T13:59:43,658   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/BCS.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-05T13:59:43,660   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/4PQ.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-05T13:59:43,662   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/2GX.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-05T13:59:43,664   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/NCY.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-05T13:59:43,665   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/ONL.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-05T13:59:43,667   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/HTR.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-05T13:59:43,669   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/ALN.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-05T13:59:43,670   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/ONL.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-05T13:59:43,672   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/CSS.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-05T13:59:43,674   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/HLU.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-05T13:59:43,676   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/MLZ.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-05T13:59:43,678   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/TY2.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-05T13:59:43,679   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/MEA.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-05T13:59:43,681   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/TYQ.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-05T13:59:43,683   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/03Y.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-05T13:59:43,684   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/YCM.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-05T13:59:43,686   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/MEQ.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-05T13:59:43,688   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/IGL.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-05T13:59:43,690   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/BCS.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-05T13:59:43,691   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/ME0.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-05T13:59:43,693   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/LMQ.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-05T13:59:43,695   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/PTR.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-05T13:59:43,697   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/FGL.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-05T13:59:43,699   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/BTK.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-05T13:59:43,701   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/NVA.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-05T13:59:43,703   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/MEA.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-05T13:59:43,704   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/CSA.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-05T13:59:43,706   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/MME.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-05T13:59:43,708   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/004.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-05T13:59:43,710   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/GNC.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-05T13:59:43,711   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/GHG.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-05T13:59:43,713   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/4IN.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-05T13:59:43,715   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/LME.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-05T13:59:43,717   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/CSO.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-05T13:59:43,718   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/MEN.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-05T13:59:43,720   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/CGU.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-05T13:59:43,722   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/D4P.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-05T13:59:43,723   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/YNM.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-05T13:59:43,725   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/D4P.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-05T13:59:43,727   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/NAL.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-05T13:59:43,729   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/M3L.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-05T13:59:43,730   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/HOX.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-05T13:59:43,732   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/MLY.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-05T13:59:43,734   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/DA2.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-05T13:59:43,736   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/BB8.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-05T13:59:43,738   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/TPO.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-05T13:59:43,740   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/MMO.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-05T13:59:43,742   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/ALY.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-05T13:59:43,744   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/TYQ.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-05T13:59:43,746   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/HPE.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-05T13:59:43,747   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/OCY.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-05T13:59:43,749   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/NAL.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-05T13:59:43,751   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/NLE.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-05T13:59:43,753   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/NZC.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-05T13:59:43,755   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/2ML.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-05T13:59:43,756   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/004.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-05T13:59:43,758   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/HOX.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-05T13:59:43,759   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/DAB.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-05T13:59:43,761   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/AHP.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-05T13:59:43,763   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/ALC.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-05T13:59:43,764   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/4PH.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-05T13:59:43,766   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/CSS.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-05T13:59:43,767   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/4IN.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-05T13:59:43,769   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/1MH.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-05T13:59:43,771   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/TRO.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-05T13:59:43,773   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/APD.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-05T13:59:43,775   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/ALC.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-05T13:59:43,777   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/2AS.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-05T13:59:43,779   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/ABA.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-05T13:59:43,780   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/NVA.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-05T13:59:43,782   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/MMO.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-05T13:59:43,784   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/HYP.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-05T13:59:43,786   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/MVA.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-05T13:59:43,788   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/ALN.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-05T13:59:43,790   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/MLE.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-05T13:59:43,792   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/0BN.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-05T13:59:43,794   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/DAH.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-05T13:59:43,795   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/PCA.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-05T13:59:43,797   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/2GX.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-05T13:59:43,799   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/GNC.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-05T13:59:43,801   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/DAH.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-05T13:59:43,803   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/HHK.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-05T13:59:43,804   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/DPP.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-05T13:59:43,806   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/2MR.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-05T13:59:43,807   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/0AF.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-05T13:59:43,809   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/AA4.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-05T13:59:43,811   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/ABA.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-05T13:59:43,812   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/CGU.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-05T13:59:43,814   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/OMX.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-05T13:59:43,816   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/LMQ.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-05T13:59:43,818   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/LME.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-05T13:59:43,820   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/FGL.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-05T13:59:43,821   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/MLY.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-05T13:59:43,823   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/03Y.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-05T13:59:43,825   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/1MH.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-05T13:59:43,827   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/CCS.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-05T13:59:43,829   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/HQA.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-05T13:59:43,831   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/GME.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-05T13:59:43,832   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/SEP.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-05T13:59:43,834   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/APD.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-05T13:59:43,836   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/IIL.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-05T13:59:43,838   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/IGL.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-05T13:59:43,839   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/MVA.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-05T13:59:43,841   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/2MR.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-05T13:59:43,843   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/TPO.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-05T13:59:43,845   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/HLU.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-05T13:59:43,846   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/MEN.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-05T13:59:43,848   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/HPE.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-05T13:59:43,850   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/DAB.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-05T13:59:43,851   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/HTR.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-05T13:59:43,853   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/PRK.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-05T13:59:43,855   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/OMX.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-05T13:59:43,857   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/HLX.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-05T13:59:43,859   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/CSA.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-05T13:59:43,860   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/NCY.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-05T13:59:43,862   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/PRK.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-05T13:59:43,864   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/0BN.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-05T13:59:43,866   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/KYN.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-05T13:59:43,867   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/GME.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-05T13:59:43,869   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/MME.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-05T13:59:43,871   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/5JP.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-05T13:59:43,873   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/0A1.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-05T13:59:43,874   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/YCM.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-05T13:59:43,876   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/OCY.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-05T13:59:43,878   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/IIL.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-05T13:59:43,879   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/CSO.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-05T13:59:43,881   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/PCA.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-05T13:59:43,883   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/2ML.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-05T13:59:43,884   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/GHG.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-05T13:59:43,886   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/AA4.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-05T13:59:43,888   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/ESC.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-05T13:59:43,889   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/SEP.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-05T13:59:43,891   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/2AS.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-05T13:59:43,893   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/CSP.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-05T13:59:43,894   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/MLE.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-05T13:59:43,896   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/TY2.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-05T13:59:43,898   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/P1L.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-05T13:59:43,901   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/ME0.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-05T13:59:43,903   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/4PQ.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-05T13:59:43,905   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/PTR.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-05T13:59:43,907   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/NZC.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-05T13:59:43,908   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/HQA.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-05T13:59:43,910   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/.gitkeep -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-05T13:59:43,912   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/HYP.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-05T13:59:43,914   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/AHP.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-05T13:59:43,916   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/HLX.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-05T13:59:43,917   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/ORM.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-05T13:59:43,919   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/NLE.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-05T13:59:43,921   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/DA2.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-05T13:59:43,922   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/MEQ.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-05T13:59:43,924   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/ALA.cif -> build/bdist.linux-armv7l/wheel/moleculekit/share
2024-06-05T13:59:43,926   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/opm_sequences.json -> build/bdist.linux-armv7l/wheel/moleculekit/share
2024-06-05T13:59:44,132   creating build/bdist.linux-armv7l/wheel/moleculekit/fileformats
2024-06-05T13:59:44,133   creating build/bdist.linux-armv7l/wheel/moleculekit/fileformats/binpos
2024-06-05T13:59:44,134   copying build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/binpos/binposlib.pxd -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/binpos
2024-06-05T13:59:44,136   creating build/bdist.linux-armv7l/wheel/moleculekit/fileformats/binpos/include
2024-06-05T13:59:44,137   copying build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/binpos/include/largefiles.h -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/binpos/include
2024-06-05T13:59:44,139   copying build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/binpos/include/binposplugin.h -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/binpos/include
2024-06-05T13:59:44,141   copying build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/binpos/include/molfile_plugin.h -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/binpos/include
2024-06-05T13:59:44,144   copying build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/binpos/binpos.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/binpos
2024-06-05T13:59:44,146   copying build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/binpos/binpos.c -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/binpos
2024-06-05T13:59:44,161   creating build/bdist.linux-armv7l/wheel/moleculekit/fileformats/binpos/src
2024-06-05T13:59:44,162   copying build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/binpos/src/binposplugin.c -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/binpos/src
2024-06-05T13:59:44,165   creating build/bdist.linux-armv7l/wheel/moleculekit/fileformats/dcd
2024-06-05T13:59:44,166   copying build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/dcd/dcd.c -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/dcd
2024-06-05T13:59:44,184   creating build/bdist.linux-armv7l/wheel/moleculekit/fileformats/dcd/include
2024-06-05T13:59:44,186   copying build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/dcd/include/largefiles.h -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/dcd/include
2024-06-05T13:59:44,190   copying build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/dcd/include/fastio.h -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/dcd/include
2024-06-05T13:59:44,193   copying build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/dcd/include/endianswap.h -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/dcd/include
2024-06-05T13:59:44,196   copying build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/dcd/include/dcdplugin.h -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/dcd/include
2024-06-05T13:59:44,199   copying build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/dcd/include/molfile_plugin.h -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/dcd/include
2024-06-05T13:59:44,202   copying build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/dcd/dcd.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/dcd
2024-06-05T13:59:44,205   copying build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/dcd/dcdlib.pxd -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/dcd
2024-06-05T13:59:44,208   creating build/bdist.linux-armv7l/wheel/moleculekit/fileformats/dcd/src
2024-06-05T13:59:44,209   copying build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/dcd/src/dcdplugin.c -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/dcd/src
2024-06-05T13:59:44,213   creating build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc
2024-06-05T13:59:44,214   copying build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/xdrlib.pxd -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc
2024-06-05T13:59:44,216   copying build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/xtc.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc
2024-06-05T13:59:44,253   copying build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/xtclib.pxd -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc
2024-06-05T13:59:44,256   creating build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc/include
2024-06-05T13:59:44,257   copying build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/include/xdr_seek.h -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc/include
2024-06-05T13:59:44,260   copying build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/include/xdrfile.h -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc/include
2024-06-05T13:59:44,263   copying build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/include/xdrfile_xtc.h -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc/include
2024-06-05T13:59:44,266   copying build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/include/xdrfile_trr.h -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc/include
2024-06-05T13:59:44,269   copying build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/include/trr_header.h -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc/include
2024-06-05T13:59:44,271   copying build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/include/xtc.h -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc/include
2024-06-05T13:59:44,274   copying build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/trr.c -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc
2024-06-05T13:59:44,294   copying build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/trrlib.pxd -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc
2024-06-05T13:59:44,296   copying build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/xtc.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc
2024-06-05T13:59:44,298   copying build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/trr.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc
2024-06-05T13:59:44,301   creating build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc/src
2024-06-05T13:59:44,302   copying build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/src/xtc.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc/src
2024-06-05T13:59:44,304   copying build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/src/xdrfile.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc/src
2024-06-05T13:59:44,308   copying build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/src/xdrfile_trr.c -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc/src
2024-06-05T13:59:44,310   copying build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/src/xdrfile_xtc.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc/src
2024-06-05T13:59:44,312   copying build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/src/xdr_seek.c -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc/src
2024-06-05T13:59:44,314   copying build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/utils.py -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats
2024-06-05T13:59:44,316   copying build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/netcdf.py -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats
2024-06-05T13:59:44,319   copying build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats
2024-06-05T13:59:44,320   copying build/lib.linux-armv7l-cpython-311/moleculekit/vmdviewer.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-06-05T13:59:44,323   creating build/bdist.linux-armv7l/wheel/moleculekit/atomselect_utils
2024-06-05T13:59:44,324   copying build/lib.linux-armv7l-cpython-311/moleculekit/atomselect_utils/atomselect_utils.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/atomselect_utils
2024-06-05T13:59:44,326   copying build/lib.linux-armv7l-cpython-311/moleculekit/atomselect_utils/atomselect_utils.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/atomselect_utils
2024-06-05T13:59:44,364   copying build/lib.linux-armv7l-cpython-311/moleculekit/rcsb.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-06-05T13:59:44,366   copying build/lib.linux-armv7l-cpython-311/moleculekit/wrapping.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2024-06-05T13:59:44,386   running install_egg_info
2024-06-05T13:59:44,391   Copying moleculekit.egg-info to build/bdist.linux-armv7l/wheel/moleculekit-1.8.33-py3.11.egg-info
2024-06-05T13:59:44,404   running install_scripts
2024-06-05T13:59:44,454   creating build/bdist.linux-armv7l/wheel/moleculekit-1.8.33.dist-info/WHEEL
2024-06-05T13:59:44,456   creating '/tmp/pip-wheel-migdce33/.tmp-91st8e8h/moleculekit-1.8.33-cp311-cp311-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2024-06-05T13:59:44,459   adding 'moleculekit/__init__.py'
2024-06-05T13:59:44,460   adding 'moleculekit/_version.py'
2024-06-05T13:59:44,462   adding 'moleculekit/align.py'
2024-06-05T13:59:44,792   adding 'moleculekit/atomselect_utils.cpython-311-arm-linux-gnueabihf.so'
2024-06-05T13:59:44,957   adding 'moleculekit/binpos.cpython-311-arm-linux-gnueabihf.so'
2024-06-05T13:59:44,963   adding 'moleculekit/bondguesser.py'
2024-06-05T13:59:45,214   adding 'moleculekit/bondguesser_utils.cpython-311-arm-linux-gnueabihf.so'
2024-06-05T13:59:45,223   adding 'moleculekit/config.py'
2024-06-05T13:59:45,489   adding 'moleculekit/cython_utils.cpython-311-arm-linux-gnueabihf.so'
2024-06-05T13:59:45,650   adding 'moleculekit/dcd.cpython-311-arm-linux-gnueabihf.so'
2024-06-05T13:59:45,656   adding 'moleculekit/dihedral.py'
2024-06-05T13:59:45,657   adding 'moleculekit/distance.py'
2024-06-05T13:59:45,984   adding 'moleculekit/distance_utils.cpython-311-arm-linux-gnueabihf.so'
2024-06-05T13:59:45,995   adding 'moleculekit/home.py'
2024-06-05T13:59:45,996   adding 'moleculekit/logging.ini'
2024-06-05T13:59:46,010   adding 'moleculekit/molecule.py'
2024-06-05T13:59:46,246   adding 'moleculekit/occupancy_utils.cpython-311-arm-linux-gnueabihf.so'
2024-06-05T13:59:46,254   adding 'moleculekit/opm.py'
2024-06-05T13:59:46,256   adding 'moleculekit/periodictable.py'
2024-06-05T13:59:46,257   adding 'moleculekit/pymolgraphics.py'
2024-06-05T13:59:46,259   adding 'moleculekit/rcsb.py'
2024-06-05T13:59:46,260   adding 'moleculekit/rdkitintegration.py'
2024-06-05T13:59:46,273   adding 'moleculekit/readers.py'
2024-06-05T13:59:46,889   adding 'moleculekit/tmalign.cpython-311-arm-linux-gnueabihf.so'
2024-06-05T13:59:47,202   adding 'moleculekit/trr.cpython-311-arm-linux-gnueabihf.so'
2024-06-05T13:59:47,213   adding 'moleculekit/util.py'
2024-06-05T13:59:47,214   adding 'moleculekit/version.py'
2024-06-05T13:59:47,216   adding 'moleculekit/viewer.py'
2024-06-05T13:59:47,217   adding 'moleculekit/vmd_wrapper'
2024-06-05T13:59:47,219   adding 'moleculekit/vmdgraphics.py'
2024-06-05T13:59:47,221   adding 'moleculekit/vmdviewer.py'
2024-06-05T13:59:47,483   adding 'moleculekit/wrapping.cpython-311-arm-linux-gnueabihf.so'
2024-06-05T13:59:47,497   adding 'moleculekit/writers.py'
2024-06-05T13:59:47,765   adding 'moleculekit/xtc.cpython-311-arm-linux-gnueabihf.so'
2024-06-05T13:59:47,775   adding 'moleculekit/atomselect/__init__.py'
2024-06-05T13:59:47,776   adding 'moleculekit/atomselect/analyze.py'
2024-06-05T13:59:47,778   adding 'moleculekit/atomselect/atomselect.py'
2024-06-05T13:59:47,780   adding 'moleculekit/atomselect/languageparser.py'
2024-06-05T13:59:47,885   adding 'moleculekit/atomselect_utils/atomselect_utils.cpp'
2024-06-05T13:59:47,896   adding 'moleculekit/atomselect_utils/atomselect_utils.pyx'
2024-06-05T13:59:47,989   adding 'moleculekit/bondguesser_utils/bondguesser_utils.cpp'
2024-06-05T13:59:47,998   adding 'moleculekit/bondguesser_utils/bondguesser_utils.pyx'
2024-06-05T13:59:48,089   adding 'moleculekit/cython_utils/cython_utils.cpp'
2024-06-05T13:59:48,098   adding 'moleculekit/cython_utils/cython_utils.pyx'
2024-06-05T13:59:48,202   adding 'moleculekit/distance_utils/distance_utils.cpp'
2024-06-05T13:59:48,212   adding 'moleculekit/distance_utils/distance_utils.pyx'
2024-06-05T13:59:48,214   adding 'moleculekit/fileformats/__init__.py'
2024-06-05T13:59:48,219   adding 'moleculekit/fileformats/netcdf.py'
2024-06-05T13:59:48,221   adding 'moleculekit/fileformats/utils.py'
2024-06-05T13:59:48,281   adding 'moleculekit/fileformats/binpos/binpos.c'
2024-06-05T13:59:48,289   adding 'moleculekit/fileformats/binpos/binpos.pyx'
2024-06-05T13:59:48,290   adding 'moleculekit/fileformats/binpos/binposlib.pxd'
2024-06-05T13:59:48,292   adding 'moleculekit/fileformats/binpos/include/binposplugin.h'
2024-06-05T13:59:48,293   adding 'moleculekit/fileformats/binpos/include/largefiles.h'
2024-06-05T13:59:48,298   adding 'moleculekit/fileformats/binpos/include/molfile_plugin.h'
2024-06-05T13:59:48,300   adding 'moleculekit/fileformats/binpos/src/binposplugin.c'
2024-06-05T13:59:48,365   adding 'moleculekit/fileformats/dcd/dcd.c'
2024-06-05T13:59:48,372   adding 'moleculekit/fileformats/dcd/dcd.pyx'
2024-06-05T13:59:48,373   adding 'moleculekit/fileformats/dcd/dcdlib.pxd'
2024-06-05T13:59:48,375   adding 'moleculekit/fileformats/dcd/include/dcdplugin.h'
2024-06-05T13:59:48,377   adding 'moleculekit/fileformats/dcd/include/endianswap.h'
2024-06-05T13:59:48,379   adding 'moleculekit/fileformats/dcd/include/fastio.h'
2024-06-05T13:59:48,380   adding 'moleculekit/fileformats/dcd/include/largefiles.h'
2024-06-05T13:59:48,385   adding 'moleculekit/fileformats/dcd/include/molfile_plugin.h'
2024-06-05T13:59:48,390   adding 'moleculekit/fileformats/dcd/src/dcdplugin.c'
2024-06-05T13:59:48,487   adding 'moleculekit/fileformats/xtc/trr.c'
2024-06-05T13:59:48,498   adding 'moleculekit/fileformats/xtc/trr.pyx'
2024-06-05T13:59:48,499   adding 'moleculekit/fileformats/xtc/trrlib.pxd'
2024-06-05T13:59:48,501   adding 'moleculekit/fileformats/xtc/xdrlib.pxd'
2024-06-05T13:59:48,591   adding 'moleculekit/fileformats/xtc/xtc.cpp'
2024-06-05T13:59:48,600   adding 'moleculekit/fileformats/xtc/xtc.pyx'
2024-06-05T13:59:48,601   adding 'moleculekit/fileformats/xtc/xtclib.pxd'
2024-06-05T13:59:48,603   adding 'moleculekit/fileformats/xtc/include/trr_header.h'
2024-06-05T13:59:48,604   adding 'moleculekit/fileformats/xtc/include/xdr_seek.h'
2024-06-05T13:59:48,606   adding 'moleculekit/fileformats/xtc/include/xdrfile.h'
2024-06-05T13:59:48,608   adding 'moleculekit/fileformats/xtc/include/xdrfile_trr.h'
2024-06-05T13:59:48,609   adding 'moleculekit/fileformats/xtc/include/xdrfile_xtc.h'
2024-06-05T13:59:48,610   adding 'moleculekit/fileformats/xtc/include/xtc.h'
2024-06-05T13:59:48,612   adding 'moleculekit/fileformats/xtc/src/xdr_seek.c'
2024-06-05T13:59:48,619   adding 'moleculekit/fileformats/xtc/src/xdrfile.cpp'
2024-06-05T13:59:48,621   adding 'moleculekit/fileformats/xtc/src/xdrfile_trr.c'
2024-06-05T13:59:48,623   adding 'moleculekit/fileformats/xtc/src/xdrfile_xtc.cpp'
2024-06-05T13:59:48,625   adding 'moleculekit/fileformats/xtc/src/xtc.cpp'
2024-06-05T13:59:48,626   adding 'moleculekit/interactions/__init__.py'
2024-06-05T13:59:48,913   adding 'moleculekit/interactions/cationpi.cpython-311-arm-linux-gnueabihf.so'
2024-06-05T13:59:49,187   adding 'moleculekit/interactions/hbonds.cpython-311-arm-linux-gnueabihf.so'
2024-06-05T13:59:49,198   adding 'moleculekit/interactions/interactions.py'
2024-06-05T13:59:49,483   adding 'moleculekit/interactions/pipi.cpython-311-arm-linux-gnueabihf.so'
2024-06-05T13:59:49,774   adding 'moleculekit/interactions/sigmahole.cpython-311-arm-linux-gnueabihf.so'
2024-06-05T13:59:49,876   adding 'moleculekit/interactions/cationpi/cationpi.cpp'
2024-06-05T13:59:49,884   adding 'moleculekit/interactions/cationpi/cationpi.pyx'
2024-06-05T13:59:49,977   adding 'moleculekit/interactions/hbonds/hbonds.cpp'
2024-06-05T13:59:49,985   adding 'moleculekit/interactions/hbonds/hbonds.pyx'
2024-06-05T13:59:50,078   adding 'moleculekit/interactions/pipi/pipi.cpp'
2024-06-05T13:59:50,087   adding 'moleculekit/interactions/pipi/pipi.pyx'
2024-06-05T13:59:50,180   adding 'moleculekit/interactions/sigmahole/sigmahole.cpp'
2024-06-05T13:59:50,188   adding 'moleculekit/interactions/sigmahole/sigmahole.pyx'
2024-06-05T13:59:50,276   adding 'moleculekit/occupancy_utils/occupancy_utils.cpp'
2024-06-05T13:59:50,285   adding 'moleculekit/occupancy_utils/occupancy_utils.pyx'
2024-06-05T13:59:50,286   adding 'moleculekit/pdbx/__init__.py'
2024-06-05T13:59:50,290   adding 'moleculekit/pdbx/reader/PdbxContainers.py'
2024-06-05T13:59:50,292   adding 'moleculekit/pdbx/reader/PdbxParser.py'
2024-06-05T13:59:50,295   adding 'moleculekit/pdbx/reader/PdbxReader.py'
2024-06-05T13:59:50,296   adding 'moleculekit/pdbx/reader/__init__.py'
2024-06-05T13:59:50,298   adding 'moleculekit/pdbx/tests/PdbxReadWriteTests.py'
2024-06-05T13:59:50,299   adding 'moleculekit/pdbx/tests/PdbxReaderTests.py'
2024-06-05T13:59:50,300   adding 'moleculekit/pdbx/tests/PdbxWriterTests.py'
2024-06-05T13:59:50,302   adding 'moleculekit/pdbx/tests/__init__.py'
2024-06-05T13:59:50,303   adding 'moleculekit/pdbx/writer/PdbxWriter.py'
2024-06-05T13:59:50,305   adding 'moleculekit/pdbx/writer/__init__.py'
2024-06-05T13:59:50,306   adding 'moleculekit/ply/__init__.py'
2024-06-05T13:59:50,310   adding 'moleculekit/ply/lex.py'
2024-06-05T13:59:50,322   adding 'moleculekit/ply/yacc.py'
2024-06-05T13:59:50,324   adding 'moleculekit/projections/__init__.py'
2024-06-05T13:59:50,326   adding 'moleculekit/projections/metriccoordinate.py'
2024-06-05T13:59:50,329   adding 'moleculekit/projections/metricdihedral.py'
2024-06-05T13:59:50,333   adding 'moleculekit/projections/metricdistance.py'
2024-06-05T13:59:50,335   adding 'moleculekit/projections/metricfluctuation.py'
2024-06-05T13:59:50,337   adding 'moleculekit/projections/metricgyration.py'
2024-06-05T13:59:50,340   adding 'moleculekit/projections/metricplumed2.py'
2024-06-05T13:59:50,342   adding 'moleculekit/projections/metricrmsd.py'
2024-06-05T13:59:50,344   adding 'moleculekit/projections/metricsasa.py'
2024-06-05T13:59:50,346   adding 'moleculekit/projections/metricsecondarystructure.py'
2024-06-05T13:59:50,348   adding 'moleculekit/projections/metricshell.py'
2024-06-05T13:59:50,349   adding 'moleculekit/projections/metricsphericalcoordinate.py'
2024-06-05T13:59:50,351   adding 'moleculekit/projections/metrictmscore.py'
2024-06-05T13:59:50,352   adding 'moleculekit/projections/projection.py'
2024-06-05T13:59:50,353   adding 'moleculekit/projections/util.py'
2024-06-05T13:59:50,355   adding 'moleculekit/share/ALA.cif'
2024-06-05T13:59:50,357   adding 'moleculekit/share/backbone.cif'
2024-06-05T13:59:51,670   adding 'moleculekit/share/opm_sequences.json'
2024-06-05T13:59:51,755   adding 'moleculekit/share/atomselect/atomselect.json'
2024-06-05T13:59:51,760   adding 'moleculekit/share/pdb2pqr/residues/.gitkeep'
2024-06-05T13:59:51,761   adding 'moleculekit/share/pdb2pqr/residues/004.dat'
2024-06-05T13:59:51,762   adding 'moleculekit/share/pdb2pqr/residues/004.xml'
2024-06-05T13:59:51,764   adding 'moleculekit/share/pdb2pqr/residues/03Y.dat'
2024-06-05T13:59:51,765   adding 'moleculekit/share/pdb2pqr/residues/03Y.xml'
2024-06-05T13:59:51,766   adding 'moleculekit/share/pdb2pqr/residues/0A1.dat'
2024-06-05T13:59:51,767   adding 'moleculekit/share/pdb2pqr/residues/0A1.xml'
2024-06-05T13:59:51,768   adding 'moleculekit/share/pdb2pqr/residues/0AF.dat'
2024-06-05T13:59:51,769   adding 'moleculekit/share/pdb2pqr/residues/0AF.xml'
2024-06-05T13:59:51,770   adding 'moleculekit/share/pdb2pqr/residues/0BN.dat'
2024-06-05T13:59:51,772   adding 'moleculekit/share/pdb2pqr/residues/0BN.xml'
2024-06-05T13:59:51,773   adding 'moleculekit/share/pdb2pqr/residues/1MH.dat'
2024-06-05T13:59:51,774   adding 'moleculekit/share/pdb2pqr/residues/1MH.xml'
2024-06-05T13:59:51,775   adding 'moleculekit/share/pdb2pqr/residues/2AS.dat'
2024-06-05T13:59:51,776   adding 'moleculekit/share/pdb2pqr/residues/2AS.xml'
2024-06-05T13:59:51,777   adding 'moleculekit/share/pdb2pqr/residues/2GX.dat'
2024-06-05T13:59:51,778   adding 'moleculekit/share/pdb2pqr/residues/2GX.xml'
2024-06-05T13:59:51,780   adding 'moleculekit/share/pdb2pqr/residues/2ML.dat'
2024-06-05T13:59:51,781   adding 'moleculekit/share/pdb2pqr/residues/2ML.xml'
2024-06-05T13:59:51,782   adding 'moleculekit/share/pdb2pqr/residues/2MR.dat'
2024-06-05T13:59:51,783   adding 'moleculekit/share/pdb2pqr/residues/2MR.xml'
2024-06-05T13:59:51,785   adding 'moleculekit/share/pdb2pqr/residues/4IN.dat'
2024-06-05T13:59:51,786   adding 'moleculekit/share/pdb2pqr/residues/4IN.xml'
2024-06-05T13:59:51,787   adding 'moleculekit/share/pdb2pqr/residues/4PH.dat'
2024-06-05T13:59:51,788   adding 'moleculekit/share/pdb2pqr/residues/4PH.xml'
2024-06-05T13:59:51,789   adding 'moleculekit/share/pdb2pqr/residues/4PQ.dat'
2024-06-05T13:59:51,790   adding 'moleculekit/share/pdb2pqr/residues/4PQ.xml'
2024-06-05T13:59:51,791   adding 'moleculekit/share/pdb2pqr/residues/5JP.dat'
2024-06-05T13:59:51,792   adding 'moleculekit/share/pdb2pqr/residues/5JP.xml'
2024-06-05T13:59:51,794   adding 'moleculekit/share/pdb2pqr/residues/AA4.dat'
2024-06-05T13:59:51,795   adding 'moleculekit/share/pdb2pqr/residues/AA4.xml'
2024-06-05T13:59:51,796   adding 'moleculekit/share/pdb2pqr/residues/ABA.dat'
2024-06-05T13:59:51,797   adding 'moleculekit/share/pdb2pqr/residues/ABA.xml'
2024-06-05T13:59:51,798   adding 'moleculekit/share/pdb2pqr/residues/AHP.dat'
2024-06-05T13:59:51,800   adding 'moleculekit/share/pdb2pqr/residues/AHP.xml'
2024-06-05T13:59:51,801   adding 'moleculekit/share/pdb2pqr/residues/ALC.dat'
2024-06-05T13:59:51,802   adding 'moleculekit/share/pdb2pqr/residues/ALC.xml'
2024-06-05T13:59:51,803   adding 'moleculekit/share/pdb2pqr/residues/ALN.dat'
2024-06-05T13:59:51,804   adding 'moleculekit/share/pdb2pqr/residues/ALN.xml'
2024-06-05T13:59:51,806   adding 'moleculekit/share/pdb2pqr/residues/ALY.dat'
2024-06-05T13:59:51,807   adding 'moleculekit/share/pdb2pqr/residues/ALY.xml'
2024-06-05T13:59:51,808   adding 'moleculekit/share/pdb2pqr/residues/APD.dat'
2024-06-05T13:59:51,809   adding 'moleculekit/share/pdb2pqr/residues/APD.xml'
2024-06-05T13:59:51,810   adding 'moleculekit/share/pdb2pqr/residues/BB8.dat'
2024-06-05T13:59:51,812   adding 'moleculekit/share/pdb2pqr/residues/BB8.xml'
2024-06-05T13:59:51,813   adding 'moleculekit/share/pdb2pqr/residues/BCS.dat'
2024-06-05T13:59:51,814   adding 'moleculekit/share/pdb2pqr/residues/BCS.xml'
2024-06-05T13:59:51,815   adding 'moleculekit/share/pdb2pqr/residues/BTK.dat'
2024-06-05T13:59:51,817   adding 'moleculekit/share/pdb2pqr/residues/BTK.xml'
2024-06-05T13:59:51,818   adding 'moleculekit/share/pdb2pqr/residues/CCS.dat'
2024-06-05T13:59:51,819   adding 'moleculekit/share/pdb2pqr/residues/CCS.xml'
2024-06-05T13:59:51,820   adding 'moleculekit/share/pdb2pqr/residues/CGU.dat'
2024-06-05T13:59:51,822   adding 'moleculekit/share/pdb2pqr/residues/CGU.xml'
2024-06-05T13:59:51,823   adding 'moleculekit/share/pdb2pqr/residues/CSA.dat'
2024-06-05T13:59:51,824   adding 'moleculekit/share/pdb2pqr/residues/CSA.xml'
2024-06-05T13:59:51,825   adding 'moleculekit/share/pdb2pqr/residues/CSO.dat'
2024-06-05T13:59:51,826   adding 'moleculekit/share/pdb2pqr/residues/CSO.xml'
2024-06-05T13:59:51,828   adding 'moleculekit/share/pdb2pqr/residues/CSP.dat'
2024-06-05T13:59:51,829   adding 'moleculekit/share/pdb2pqr/residues/CSP.xml'
2024-06-05T13:59:51,830   adding 'moleculekit/share/pdb2pqr/residues/CSS.dat'
2024-06-05T13:59:51,831   adding 'moleculekit/share/pdb2pqr/residues/CSS.xml'
2024-06-05T13:59:51,832   adding 'moleculekit/share/pdb2pqr/residues/D4P.dat'
2024-06-05T13:59:51,833   adding 'moleculekit/share/pdb2pqr/residues/D4P.xml'
2024-06-05T13:59:51,834   adding 'moleculekit/share/pdb2pqr/residues/DA2.dat'
2024-06-05T13:59:51,835   adding 'moleculekit/share/pdb2pqr/residues/DA2.xml'
2024-06-05T13:59:51,836   adding 'moleculekit/share/pdb2pqr/residues/DAB.dat'
2024-06-05T13:59:51,837   adding 'moleculekit/share/pdb2pqr/residues/DAB.xml'
2024-06-05T13:59:51,839   adding 'moleculekit/share/pdb2pqr/residues/DAH.dat'
2024-06-05T13:59:51,840   adding 'moleculekit/share/pdb2pqr/residues/DAH.xml'
2024-06-05T13:59:51,841   adding 'moleculekit/share/pdb2pqr/residues/DPP.dat'
2024-06-05T13:59:51,842   adding 'moleculekit/share/pdb2pqr/residues/DPP.xml'
2024-06-05T13:59:51,843   adding 'moleculekit/share/pdb2pqr/residues/ESC.dat'
2024-06-05T13:59:51,844   adding 'moleculekit/share/pdb2pqr/residues/ESC.xml'
2024-06-05T13:59:51,846   adding 'moleculekit/share/pdb2pqr/residues/FGL.dat'
2024-06-05T13:59:51,847   adding 'moleculekit/share/pdb2pqr/residues/FGL.xml'
2024-06-05T13:59:51,848   adding 'moleculekit/share/pdb2pqr/residues/GHG.dat'
2024-06-05T13:59:51,849   adding 'moleculekit/share/pdb2pqr/residues/GHG.xml'
2024-06-05T13:59:51,850   adding 'moleculekit/share/pdb2pqr/residues/GME.dat'
2024-06-05T13:59:51,851   adding 'moleculekit/share/pdb2pqr/residues/GME.xml'
2024-06-05T13:59:51,852   adding 'moleculekit/share/pdb2pqr/residues/GNC.dat'
2024-06-05T13:59:51,854   adding 'moleculekit/share/pdb2pqr/residues/GNC.xml'
2024-06-05T13:59:51,855   adding 'moleculekit/share/pdb2pqr/residues/HHK.dat'
2024-06-05T13:59:51,856   adding 'moleculekit/share/pdb2pqr/residues/HHK.xml'
2024-06-05T13:59:51,857   adding 'moleculekit/share/pdb2pqr/residues/HLU.dat'
2024-06-05T13:59:51,858   adding 'moleculekit/share/pdb2pqr/residues/HLU.xml'
2024-06-05T13:59:51,860   adding 'moleculekit/share/pdb2pqr/residues/HLX.dat'
2024-06-05T13:59:51,861   adding 'moleculekit/share/pdb2pqr/residues/HLX.xml'
2024-06-05T13:59:51,862   adding 'moleculekit/share/pdb2pqr/residues/HOX.dat'
2024-06-05T13:59:51,863   adding 'moleculekit/share/pdb2pqr/residues/HOX.xml'
2024-06-05T13:59:51,864   adding 'moleculekit/share/pdb2pqr/residues/HPE.dat'
2024-06-05T13:59:51,866   adding 'moleculekit/share/pdb2pqr/residues/HPE.xml'
2024-06-05T13:59:51,867   adding 'moleculekit/share/pdb2pqr/residues/HQA.dat'
2024-06-05T13:59:51,868   adding 'moleculekit/share/pdb2pqr/residues/HQA.xml'
2024-06-05T13:59:51,869   adding 'moleculekit/share/pdb2pqr/residues/HTR.dat'
2024-06-05T13:59:51,871   adding 'moleculekit/share/pdb2pqr/residues/HTR.xml'
2024-06-05T13:59:51,872   adding 'moleculekit/share/pdb2pqr/residues/HYP.dat'
2024-06-05T13:59:51,873   adding 'moleculekit/share/pdb2pqr/residues/HYP.xml'
2024-06-05T13:59:51,874   adding 'moleculekit/share/pdb2pqr/residues/I2M.dat'
2024-06-05T13:59:51,875   adding 'moleculekit/share/pdb2pqr/residues/I2M.xml'
2024-06-05T13:59:51,876   adding 'moleculekit/share/pdb2pqr/residues/IGL.dat'
2024-06-05T13:59:51,878   adding 'moleculekit/share/pdb2pqr/residues/IGL.xml'
2024-06-05T13:59:51,879   adding 'moleculekit/share/pdb2pqr/residues/IIL.dat'
2024-06-05T13:59:51,880   adding 'moleculekit/share/pdb2pqr/residues/IIL.xml'
2024-06-05T13:59:51,881   adding 'moleculekit/share/pdb2pqr/residues/IML.dat'
2024-06-05T13:59:51,883   adding 'moleculekit/share/pdb2pqr/residues/IML.xml'
2024-06-05T13:59:51,884   adding 'moleculekit/share/pdb2pqr/residues/KYN.dat'
2024-06-05T13:59:51,885   adding 'moleculekit/share/pdb2pqr/residues/KYN.xml'
2024-06-05T13:59:51,886   adding 'moleculekit/share/pdb2pqr/residues/LME.dat'
2024-06-05T13:59:51,887   adding 'moleculekit/share/pdb2pqr/residues/LME.xml'
2024-06-05T13:59:51,889   adding 'moleculekit/share/pdb2pqr/residues/LMQ.dat'
2024-06-05T13:59:51,890   adding 'moleculekit/share/pdb2pqr/residues/LMQ.xml'
2024-06-05T13:59:51,891   adding 'moleculekit/share/pdb2pqr/residues/LYZ.dat'
2024-06-05T13:59:51,892   adding 'moleculekit/share/pdb2pqr/residues/LYZ.xml'
2024-06-05T13:59:51,893   adding 'moleculekit/share/pdb2pqr/residues/M3L.dat'
2024-06-05T13:59:51,895   adding 'moleculekit/share/pdb2pqr/residues/M3L.xml'
2024-06-05T13:59:51,896   adding 'moleculekit/share/pdb2pqr/residues/ME0.dat'
2024-06-05T13:59:51,897   adding 'moleculekit/share/pdb2pqr/residues/ME0.xml'
2024-06-05T13:59:51,898   adding 'moleculekit/share/pdb2pqr/residues/MEA.dat'
2024-06-05T13:59:51,899   adding 'moleculekit/share/pdb2pqr/residues/MEA.xml'
2024-06-05T13:59:51,900   adding 'moleculekit/share/pdb2pqr/residues/MEN.dat'
2024-06-05T13:59:51,901   adding 'moleculekit/share/pdb2pqr/residues/MEN.xml'
2024-06-05T13:59:51,902   adding 'moleculekit/share/pdb2pqr/residues/MEQ.dat'
2024-06-05T13:59:51,904   adding 'moleculekit/share/pdb2pqr/residues/MEQ.xml'
2024-06-05T13:59:51,905   adding 'moleculekit/share/pdb2pqr/residues/MLE.dat'
2024-06-05T13:59:51,906   adding 'moleculekit/share/pdb2pqr/residues/MLE.xml'
2024-06-05T13:59:51,907   adding 'moleculekit/share/pdb2pqr/residues/MLY.dat'
2024-06-05T13:59:51,908   adding 'moleculekit/share/pdb2pqr/residues/MLY.xml'
2024-06-05T13:59:51,910   adding 'moleculekit/share/pdb2pqr/residues/MLZ.dat'
2024-06-05T13:59:51,911   adding 'moleculekit/share/pdb2pqr/residues/MLZ.xml'
2024-06-05T13:59:51,912   adding 'moleculekit/share/pdb2pqr/residues/MME.dat'
2024-06-05T13:59:51,913   adding 'moleculekit/share/pdb2pqr/residues/MME.xml'
2024-06-05T13:59:51,914   adding 'moleculekit/share/pdb2pqr/residues/MMO.dat'
2024-06-05T13:59:51,916   adding 'moleculekit/share/pdb2pqr/residues/MMO.xml'
2024-06-05T13:59:51,917   adding 'moleculekit/share/pdb2pqr/residues/MVA.dat'
2024-06-05T13:59:51,918   adding 'moleculekit/share/pdb2pqr/residues/MVA.xml'
2024-06-05T13:59:51,919   adding 'moleculekit/share/pdb2pqr/residues/NAL.dat'
2024-06-05T13:59:51,921   adding 'moleculekit/share/pdb2pqr/residues/NAL.xml'
2024-06-05T13:59:51,922   adding 'moleculekit/share/pdb2pqr/residues/NCY.dat'
2024-06-05T13:59:51,923   adding 'moleculekit/share/pdb2pqr/residues/NCY.xml'
2024-06-05T13:59:51,924   adding 'moleculekit/share/pdb2pqr/residues/NLE.dat'
2024-06-05T13:59:51,925   adding 'moleculekit/share/pdb2pqr/residues/NLE.xml'
2024-06-05T13:59:51,927   adding 'moleculekit/share/pdb2pqr/residues/NVA.dat'
2024-06-05T13:59:51,928   adding 'moleculekit/share/pdb2pqr/residues/NVA.xml'
2024-06-05T13:59:51,929   adding 'moleculekit/share/pdb2pqr/residues/NZC.dat'
2024-06-05T13:59:51,930   adding 'moleculekit/share/pdb2pqr/residues/NZC.xml'
2024-06-05T13:59:51,931   adding 'moleculekit/share/pdb2pqr/residues/OCY.dat'
2024-06-05T13:59:51,933   adding 'moleculekit/share/pdb2pqr/residues/OCY.xml'
2024-06-05T13:59:51,934   adding 'moleculekit/share/pdb2pqr/residues/OMX.dat'
2024-06-05T13:59:51,935   adding 'moleculekit/share/pdb2pqr/residues/OMX.xml'
2024-06-05T13:59:51,936   adding 'moleculekit/share/pdb2pqr/residues/ONL.dat'
2024-06-05T13:59:51,938   adding 'moleculekit/share/pdb2pqr/residues/ONL.xml'
2024-06-05T13:59:51,939   adding 'moleculekit/share/pdb2pqr/residues/ORM.dat'
2024-06-05T13:59:51,940   adding 'moleculekit/share/pdb2pqr/residues/ORM.xml'
2024-06-05T13:59:51,941   adding 'moleculekit/share/pdb2pqr/residues/P1L.dat'
2024-06-05T13:59:51,943   adding 'moleculekit/share/pdb2pqr/residues/P1L.xml'
2024-06-05T13:59:51,944   adding 'moleculekit/share/pdb2pqr/residues/PCA.dat'
2024-06-05T13:59:51,945   adding 'moleculekit/share/pdb2pqr/residues/PCA.xml'
2024-06-05T13:59:51,946   adding 'moleculekit/share/pdb2pqr/residues/PRK.dat'
2024-06-05T13:59:51,948   adding 'moleculekit/share/pdb2pqr/residues/PRK.xml'
2024-06-05T13:59:51,949   adding 'moleculekit/share/pdb2pqr/residues/PTR.dat'
2024-06-05T13:59:51,950   adding 'moleculekit/share/pdb2pqr/residues/PTR.xml'
2024-06-05T13:59:51,951   adding 'moleculekit/share/pdb2pqr/residues/SEP.dat'
2024-06-05T13:59:51,952   adding 'moleculekit/share/pdb2pqr/residues/SEP.xml'
2024-06-05T13:59:51,953   adding 'moleculekit/share/pdb2pqr/residues/TPO.dat'
2024-06-05T13:59:51,955   adding 'moleculekit/share/pdb2pqr/residues/TPO.xml'
2024-06-05T13:59:51,956   adding 'moleculekit/share/pdb2pqr/residues/TRO.dat'
2024-06-05T13:59:51,957   adding 'moleculekit/share/pdb2pqr/residues/TRO.xml'
2024-06-05T13:59:51,959   adding 'moleculekit/share/pdb2pqr/residues/TY2.dat'
2024-06-05T13:59:51,960   adding 'moleculekit/share/pdb2pqr/residues/TY2.xml'
2024-06-05T13:59:51,961   adding 'moleculekit/share/pdb2pqr/residues/TYQ.dat'
2024-06-05T13:59:51,962   adding 'moleculekit/share/pdb2pqr/residues/TYQ.xml'
2024-06-05T13:59:51,963   adding 'moleculekit/share/pdb2pqr/residues/YCM.dat'
2024-06-05T13:59:51,965   adding 'moleculekit/share/pdb2pqr/residues/YCM.xml'
2024-06-05T13:59:51,966   adding 'moleculekit/share/pdb2pqr/residues/YNM.dat'
2024-06-05T13:59:51,967   adding 'moleculekit/share/pdb2pqr/residues/YNM.xml'
2024-06-05T13:59:51,969   adding 'moleculekit/smallmol/__init__.py'
2024-06-05T13:59:51,974   adding 'moleculekit/smallmol/smallmol.py'
2024-06-05T13:59:51,976   adding 'moleculekit/smallmol/smallmolcdp.py'
2024-06-05T13:59:51,978   adding 'moleculekit/smallmol/smallmollib.py'
2024-06-05T13:59:51,980   adding 'moleculekit/smallmol/test_smallmol.py'
2024-06-05T13:59:51,982   adding 'moleculekit/smallmol/test_smallmollib.py'
2024-06-05T13:59:51,984   adding 'moleculekit/smallmol/util.py'
2024-06-05T13:59:51,985   adding 'moleculekit/smallmol/tools/__init__.py'
2024-06-05T13:59:51,987   adding 'moleculekit/smallmol/tools/clustering.py'
2024-06-05T13:59:51,989   adding 'moleculekit/smallmol/tools/restrainedembed.py'
2024-06-05T13:59:51,990   adding 'moleculekit/smallmol/tools/test_tools.py'
2024-06-05T13:59:52,081   adding 'moleculekit/tmalign/tmalign_util.cpp'
2024-06-05T13:59:52,090   adding 'moleculekit/tmalign/tmalign_util.pyx'
2024-06-05T13:59:52,091   adding 'moleculekit/tmalign/tmalignlib.pxd'
2024-06-05T13:59:52,093   adding 'moleculekit/tmalign/include/TMAlign.h'
2024-06-05T13:59:52,110   adding 'moleculekit/tmalign/src/TMAlign.cpp'
2024-06-05T13:59:52,113   adding 'moleculekit/tools/__init__.py'
2024-06-05T13:59:52,115   adding 'moleculekit/tools/atomtyper.py'
2024-06-05T13:59:52,117   adding 'moleculekit/tools/autosegment.py'
2024-06-05T13:59:52,119   adding 'moleculekit/tools/crystalpacking.py'
2024-06-05T13:59:52,123   adding 'moleculekit/tools/detect.py'
2024-06-05T13:59:52,125   adding 'moleculekit/tools/docking.py'
2024-06-05T13:59:52,126   adding 'moleculekit/tools/graphalignment.py'
2024-06-05T13:59:52,128   adding 'moleculekit/tools/hhblitsprofile.py'
2024-06-05T13:59:52,129   adding 'moleculekit/tools/modelling.py'
2024-06-05T13:59:52,131   adding 'moleculekit/tools/moleculechecks.py'
2024-06-05T13:59:52,137   adding 'moleculekit/tools/preparation.py'
2024-06-05T13:59:52,139   adding 'moleculekit/tools/preparation_customres.py'
2024-06-05T13:59:52,141   adding 'moleculekit/tools/sequencestructuralalignment.py'
2024-06-05T13:59:52,144   adding 'moleculekit/tools/voxeldescriptors.py'
2024-06-05T13:59:52,146   adding 'moleculekit/tools/obabel_tools/__init__.py'
2024-06-05T13:59:52,147   adding 'moleculekit/tools/obabel_tools/obabel_cli.py'
2024-06-05T13:59:52,240   adding 'moleculekit/wrapping/wrapping.cpp'
2024-06-05T13:59:52,249   adding 'moleculekit/wrapping/wrapping.pyx'
2024-06-05T13:59:52,251   adding 'moleculekit-1.8.33.dist-info/LICENSE'
2024-06-05T13:59:52,253   adding 'moleculekit-1.8.33.dist-info/METADATA'
2024-06-05T13:59:52,253   adding 'moleculekit-1.8.33.dist-info/WHEEL'
2024-06-05T13:59:52,254   adding 'moleculekit-1.8.33.dist-info/top_level.txt'
2024-06-05T13:59:52,259   adding 'moleculekit-1.8.33.dist-info/RECORD'
2024-06-05T13:59:52,430   removing build/bdist.linux-armv7l/wheel
2024-06-05T13:59:52,737   Building wheel for moleculekit (pyproject.toml): finished with status 'done'
2024-06-05T13:59:53,096   Created wheel for moleculekit: filename=moleculekit-1.8.33-cp311-cp311-linux_armv7l.whl size=15274354 sha256=d0cfcf678117cf5ef4f82d9243483dc4716205e56e437386690ac215787c35cf
2024-06-05T13:59:53,098   Stored in directory: /tmp/pip-ephem-wheel-cache-to5xrh2r/wheels/42/e6/65/dbda37a1704ad45e561ba633a8da2c2d1900d7c349a0da97d6
2024-06-05T13:59:53,124 Successfully built moleculekit
2024-06-05T13:59:53,480 Removed build tracker: '/tmp/pip-build-tracker-d0e702au'