2024-06-05T15:50:47,435 Created temporary directory: /tmp/pip-build-tracker-zn9uxige
2024-06-05T15:50:47,436 Initialized build tracking at /tmp/pip-build-tracker-zn9uxige
2024-06-05T15:50:47,436 Created build tracker: /tmp/pip-build-tracker-zn9uxige
2024-06-05T15:50:47,437 Entered build tracker: /tmp/pip-build-tracker-zn9uxige
2024-06-05T15:50:47,437 Created temporary directory: /tmp/pip-wheel-a3esy6x6
2024-06-05T15:50:47,441 Created temporary directory: /tmp/pip-ephem-wheel-cache-pg2_ttvo
2024-06-05T15:50:47,466 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2024-06-05T15:50:47,469 2 location(s) to search for versions of moleculekit:
2024-06-05T15:50:47,469 * https://pypi.org/simple/moleculekit/
2024-06-05T15:50:47,469 * https://www.piwheels.org/simple/moleculekit/
2024-06-05T15:50:47,469 Fetching project page and analyzing links: https://pypi.org/simple/moleculekit/
2024-06-05T15:50:47,470 Getting page https://pypi.org/simple/moleculekit/
2024-06-05T15:50:47,472 Found index url https://pypi.org/simple/
2024-06-05T15:50:47,528 Fetched page https://pypi.org/simple/moleculekit/ as application/vnd.pypi.simple.v1+json
2024-06-05T15:50:47,572   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/91/e6/25b6853357dfef8a4026325e420d8213d34c17c078a2f13b60cbb6213ea3/moleculekit-0.1.4-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-06-05T15:50:47,572   Found link https://files.pythonhosted.org/packages/13/0f/a200e8e7632d3a521cfc7c15fa4d0270802efce40f98ac5a5cae58385b7e/moleculekit-0.1.4.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.4
2024-06-05T15:50:47,572   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/9f/a5/eac32fcb2e9ff0d30298aa4cec8e152c95d675c4dd1a1a5d7676986d4d75/moleculekit-0.1.5-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-06-05T15:50:47,573   Found link https://files.pythonhosted.org/packages/c5/6f/ae7d1b8513eb23ec0fa8e153c42fda0ee96f9e29c6e4808c5ff78c115e89/moleculekit-0.1.5.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.5
2024-06-05T15:50:47,573   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/e2/51/0f4e4b95d0d5c16664ede7f2cd31e6d6003e9c940a8fbe28c74de91de627/moleculekit-0.1.6-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-06-05T15:50:47,573   Found link https://files.pythonhosted.org/packages/08/fa/bc1b5918a1715901fd0ea1e796de9e6647276943983962616f2ddceb1c3b/moleculekit-0.1.6.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.6
2024-06-05T15:50:47,573   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/49/59/ddf780e7a574dde727d5db8b93c41bcc3d19436a8ae9f468bad5ea48529e/moleculekit-0.1.7-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-06-05T15:50:47,574   Found link https://files.pythonhosted.org/packages/c7/cb/d1b609de2d59d10a60ca74c9d1a044534f608e323dc16a87e5bd77ee0eb0/moleculekit-0.1.7.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.7
2024-06-05T15:50:47,574   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/5b/a4/59e6017c4e5b99be72d8e0eb6b6442061f338e309d91c25d607162298d11/moleculekit-0.1.8-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-06-05T15:50:47,574   Found link https://files.pythonhosted.org/packages/c0/1d/753c7461942457e39fb069504cdc381518a4ef18f486de0a42572236095e/moleculekit-0.1.8.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.8
2024-06-05T15:50:47,574   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/28/39/e4219020234475a17077f38ebcbdff236872d8e3a0455b376edb847f4141/moleculekit-0.1.9-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-06-05T15:50:47,575   Found link https://files.pythonhosted.org/packages/e0/c6/5d47b6257a3d1aca76d635d1dc8fffd6ed712fbe324bfeb2f2da47edda09/moleculekit-0.1.9.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.9
2024-06-05T15:50:47,575   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/3c/12/42a0a156c8a51b2ef9de7c720cbcd226c1b0a7d13dce7dcdd4c34480e05f/moleculekit-0.1.12-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-06-05T15:50:47,575   Found link https://files.pythonhosted.org/packages/12/9d/ef12aeb7165210a6d06f5a735640db6c49cda2597bebb3584e72f7a2aee5/moleculekit-0.1.12.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.12
2024-06-05T15:50:47,575   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/e0/de/ddea29e806547e8743801bd5b44f5f4b62e96a3b6aa1b59e7ae3c183e65d/moleculekit-0.1.14-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-06-05T15:50:47,576   Found link https://files.pythonhosted.org/packages/0f/b8/5dce8ade2a03ba18558275d58f1f586fc78b76442ca923e02e05b7aa4638/moleculekit-0.1.14.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.14
2024-06-05T15:50:47,576   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/98/67/c911fd0aab052ed8866739c282be96070bcafee75cad331165f356d0bf11/moleculekit-0.1.15-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-06-05T15:50:47,576   Found link https://files.pythonhosted.org/packages/be/5c/b803aa60ac93136e6fce9ab52ec50aec246481c5db76892780152f769d75/moleculekit-0.1.15.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.15
2024-06-05T15:50:47,576   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/4f/30/78d34f8541a5e0e7488b6d59c43b29cf4d9f42467553fb0cee41312409c7/moleculekit-0.1.16-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-06-05T15:50:47,576   Found link https://files.pythonhosted.org/packages/d3/39/0774efc740b7e6a6969e084e0eb126483049a60229de80cc09a1a4b78011/moleculekit-0.1.16.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.16
2024-06-05T15:50:47,577   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/ca/d8/f9dd491ee5984f59dbd1206bb41062543e1a1664bb002d4b2675ec3f882c/moleculekit-0.1.17-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-06-05T15:50:47,577   Found link https://files.pythonhosted.org/packages/f6/27/b820e1158e448f35830265eeb023ec7d7cc72272136a31ec5365a893174f/moleculekit-0.1.17.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.17
2024-06-05T15:50:47,577   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/0d/df/1d0dfd734e1d67c6ba1a1291b6f530c60eb3a65c25e2990d0fb62c73dbea/moleculekit-0.1.19-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-06-05T15:50:47,577   Found link https://files.pythonhosted.org/packages/6e/55/28d041ad7324e063e00ed2e0a5cd91d4c67e6cda3e62c24ab9c3ea2ad5dc/moleculekit-0.1.19.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.19
2024-06-05T15:50:47,578   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/f0/f3/18f3b015e5fdf04c0243d63132d4d29ab807b608bda9cab6de505c060196/moleculekit-0.1.21-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-06-05T15:50:47,578   Found link https://files.pythonhosted.org/packages/d7/2f/510d466d4e507523c6f8bb5323a03351e0a9e6422b29ab7a9d7b34101484/moleculekit-0.1.21.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.21
2024-06-05T15:50:47,578   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/2c/83/5bdc26bbc9c0dc6b7fa54260134f5545c6f8c01e50b4cc94de02d0a2f295/moleculekit-0.1.22-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-06-05T15:50:47,578   Found link https://files.pythonhosted.org/packages/28/80/3c053d293b0aad5df512b8c7bf1ef111c621ee80bbe08ea83763ca004a85/moleculekit-0.1.22.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.22
2024-06-05T15:50:47,579   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/5d/ec/9e6438a424607cba93fe71b89ef89dbff35369f133ed76ded895861ab290/moleculekit-0.1.23-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-06-05T15:50:47,579   Found link https://files.pythonhosted.org/packages/6d/c3/680633af7541d2c7ecf2fde4dc9661f107efaf55688d3f41d15407cb2248/moleculekit-0.1.23.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.23
2024-06-05T15:50:47,579   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/0b/02/f2bbd133b7e76a60bdc1d92d10621ce9f60f8eeaf97ed7dacae2e216cb2b/moleculekit-0.1.24-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-06-05T15:50:47,579   Found link https://files.pythonhosted.org/packages/7f/f7/48b8b09fbf6e368925a186ef4cb874ae0abfae6d5b81bd2656502290add5/moleculekit-0.1.24.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.24
2024-06-05T15:50:47,579   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/1e/bd/24146e575547d1fc8bd24b4b7d9a57cbe14c357ebf85d638df6421412465/moleculekit-0.1.26-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-06-05T15:50:47,580   Found link https://files.pythonhosted.org/packages/f5/6e/a9dafd4b3b109011d156a6f7c726925669e42435b6049859f3a0a050a87f/moleculekit-0.1.26.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.26
2024-06-05T15:50:47,580   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/fe/63/a0e65b18866805186e3a4ba2b8ece20b73b85ec1ce6b3f8597e0c2508178/moleculekit-0.1.27-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-06-05T15:50:47,580   Found link https://files.pythonhosted.org/packages/70/7e/a01a54d9e88eaf00ec47989f360fb98d58e871d500aa28c44b9c7b8bd7ff/moleculekit-0.1.27.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.27
2024-06-05T15:50:47,580   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/f1/db/8f0879b07acae5356393297640e1116c459d28b59d19e1bd328da94e4b7a/moleculekit-0.1.29-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-06-05T15:50:47,581   Found link https://files.pythonhosted.org/packages/dc/10/67c6720423554f257425330caf21342c13c59bc86aee634f369b481dad7b/moleculekit-0.1.29.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.29
2024-06-05T15:50:47,581   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/83/f1/2cb963c0a74d919761e8516fe969330c122c9874426ff8eef7834b9b0c62/moleculekit-0.1.30-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-06-05T15:50:47,581   Found link https://files.pythonhosted.org/packages/a9/87/cd070158b979d89c02edf2a1deb98ced11e6a442952ed67ebb4f281d6700/moleculekit-0.1.30.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.30
2024-06-05T15:50:47,581   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/cf/c4/f211cc80e281f1ee01040cfa490a65e874a54b5bedf2dfd73e3be6e72d93/moleculekit-0.1.31-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-06-05T15:50:47,581   Found link https://files.pythonhosted.org/packages/d7/8b/2b012f3371e5fceb875601e16c83a0ddfd5602d1cdceb953a4b36fc12200/moleculekit-0.1.31.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.31
2024-06-05T15:50:47,582   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/bf/2e/56178883cad4d2429d5cb5fb23d17be42663dea6da428df98f2b70be67a3/moleculekit-0.1.32-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-06-05T15:50:47,582   Found link https://files.pythonhosted.org/packages/97/34/992324fd9f1bb4d151b3383f601e3b69810e62c9d3530580ae8b43c4dcca/moleculekit-0.1.32.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.32
2024-06-05T15:50:47,582   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/7e/84/8e678afbcbd29c9b462973571bf3a043a7b5dbf7a98f1ac3dc82c3f5fc91/moleculekit-0.2.0-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-06-05T15:50:47,582   Found link https://files.pythonhosted.org/packages/10/f8/dfc9b84d16081239c0b6e3a2896e59db9f8b8617a67b7585e98789942324/moleculekit-0.2.0.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.0
2024-06-05T15:50:47,583   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/cb/a7/e706e1daa9d60d9ca9a96436564ec0612fe5fc850fdabad6e0c5174d52c5/moleculekit-0.2.1-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-06-05T15:50:47,583   Found link https://files.pythonhosted.org/packages/a8/ad/3c01c094324fcaf3a516aa3ab376ae4bec251dc2005f172217368e97b1db/moleculekit-0.2.1.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.1
2024-06-05T15:50:47,583   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/30/c3/e618404cdeb463f4f5f8fbfa1d5d45a81ea3c31cef86e9c6ca14a3d64589/moleculekit-0.2.2-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-06-05T15:50:47,583   Found link https://files.pythonhosted.org/packages/ce/2a/e4f0ea22c4e3be055409fbe8cda7802bd2cd1095926f62f2c78b7f447b46/moleculekit-0.2.2.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.2
2024-06-05T15:50:47,584   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/3c/c6/baf4c6dafa42a7f055cd29cad8a79b2e99baaf474e8ddcff833e02a8c9a2/moleculekit-0.2.3-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-06-05T15:50:47,584   Found link https://files.pythonhosted.org/packages/92/3b/d42fa900fbc359ad0b7806344c2eb303f06336fc6bad439db5550483ce5c/moleculekit-0.2.3.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.3
2024-06-05T15:50:47,584   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/d7/72/5674ef2a697583774eb66559f23b37026098badcc7e14bb09247c112baec/moleculekit-0.2.4-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-06-05T15:50:47,584   Found link https://files.pythonhosted.org/packages/7c/f3/5372063ddc10f57f1ea1aa29ab3f06d98d3d29c22d2a3d0c7c318ff7dc4a/moleculekit-0.2.4.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.4
2024-06-05T15:50:47,584   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/35/99/9bc21e28d9d4007623055b30fc43d18464649dfa39703ea80e9c32ba4607/moleculekit-0.2.5-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-06-05T15:50:47,585   Found link https://files.pythonhosted.org/packages/dd/7a/f6d8ac771d9e4c9117ab098a281231e6c4c3fadbbeafce69ac5b8370f2bd/moleculekit-0.2.5.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.5
2024-06-05T15:50:47,585   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/97/2d/1b5aeecf49f225f13c39534c7a93181f14bbb295f4b0bb50019d7efda717/moleculekit-0.2.6-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-06-05T15:50:47,585   Found link https://files.pythonhosted.org/packages/8a/04/f032c25621eac9ccab21dd25c0cb5d7150a21a5b0cde5ae21adb3e2be933/moleculekit-0.2.6.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.6
2024-06-05T15:50:47,585   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/7b/c3/6023b75cb8d60607d1932a6f3fa1fee5c99e88b692f25e3ed0072a4812a5/moleculekit-0.2.7-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-06-05T15:50:47,586   Found link https://files.pythonhosted.org/packages/a6/68/1eb4fb904763839ec4df4eab490702bd7245a6848ebfb693b165d5fbb153/moleculekit-0.2.7.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.7
2024-06-05T15:50:47,586   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/a3/85/452591c89b66659eaf24e216aef7818e3061a78bb1fc832f8616808949d4/moleculekit-0.2.8-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-06-05T15:50:47,586   Found link https://files.pythonhosted.org/packages/68/e0/0fe1302790061ea9e59370a988d67b877642c45a9e6d725819118cc3aae1/moleculekit-0.2.8.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.8
2024-06-05T15:50:47,586   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/90/90/238209bf8023d0779c0d4a9592786cc94e69d3dde60b5b17473d57c97b60/moleculekit-0.2.9-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-06-05T15:50:47,587   Found link https://files.pythonhosted.org/packages/bd/ad/aa7f2c7343506e17f61f2c4223dc912d4f099fdcc3e1736f393c9c31e118/moleculekit-0.2.9.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.9
2024-06-05T15:50:47,587   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/40/39/e7c3ea68289cf49ac58a53a55de11c71471a26c55268ce2a11dd3d0f4b1d/moleculekit-0.3.0-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-06-05T15:50:47,587   Found link https://files.pythonhosted.org/packages/9d/1e/99ffa0d73766a735c3e91d591c92537e37b0024cd9b1d745c4e5933563c1/moleculekit-0.3.0.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.3.0
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2024-06-05T15:50:47,604   Found link https://files.pythonhosted.org/packages/5c/b2/944d529319db190e13234dd2337bff23b7a7c3c1a98b2a95eb08fc802530/moleculekit-0.9.7.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.9.7
2024-06-05T15:50:47,604   Found link https://files.pythonhosted.org/packages/42/0a/fbfa3d5c838ad716fdcb9b5ad55bddb6dccd74c5c281ac171be93b0f58e2/moleculekit-0.9.8.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.9.8
2024-06-05T15:50:47,605   Found link https://files.pythonhosted.org/packages/15/e0/93b4cc5e997a9e4e01fd39f00548f04e3f068961abba30f82fc04aa828ac/moleculekit-0.9.9.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.9.9
2024-06-05T15:50:47,605   Found link https://files.pythonhosted.org/packages/7f/58/2f04c5387c3c23e5c46f71741f7655c380b01c6f88aad7b5e945943c3fd1/moleculekit-0.9.12.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.9.12
2024-06-05T15:50:47,605   Found link https://files.pythonhosted.org/packages/b5/7c/fde4b7b8c9cd6683036e87727f341a0c9de5dae09f324dfa1bc2aa2a6de0/moleculekit-0.9.13.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.9.13
2024-06-05T15:50:47,605   Found link https://files.pythonhosted.org/packages/8e/f7/39a1290893da55d759e629ea6d9e2509fe6c3a06538d3f80cca590859647/moleculekit-0.9.14.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.9.14
2024-06-05T15:50:47,606   Found link https://files.pythonhosted.org/packages/02/6e/108b002ecb68c789d690492a02ced311cea625fdd642348e5cd75bd25fdb/moleculekit-0.9.15.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.9.15
2024-06-05T15:50:47,606   Found link https://files.pythonhosted.org/packages/62/51/f195a9d66dab99b8f6bd30fe5f65f63c65e65ded97c8fd20bf0cda822ee1/moleculekit-0.10.0.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.10.0
2024-06-05T15:50:47,606   Found link https://files.pythonhosted.org/packages/19/73/98bfd38e7d5823dc1d21ca3557d9f599b09926d252b22e215688677fe1eb/moleculekit-1.0.0.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.0.0
2024-06-05T15:50:47,606   Found link https://files.pythonhosted.org/packages/fc/d7/f3aa2dd40f165c1b67401587414deb33e80764835dfe2abb16b9b1d167bf/moleculekit-1.0.1.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.0.1
2024-06-05T15:50:47,607   Found link https://files.pythonhosted.org/packages/19/54/5ec72761331cfeea3e48a65f0dc30f7c21ec586f6d2b904339c262abafd8/moleculekit-1.0.2.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.0.2
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2024-06-05T15:50:47,608   Found link https://files.pythonhosted.org/packages/28/2f/61d6e171e7b0309a94b3920b2743e5b6990d24a4870a5b1caf39f0e34338/moleculekit-1.0.6.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.0.6
2024-06-05T15:50:47,608   Found link https://files.pythonhosted.org/packages/6d/1e/bbd2d882b353e673f44897179ab0b6e76df9c2a657d25d47090dbdce76d3/moleculekit-1.0.7.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.0.7
2024-06-05T15:50:47,608   Found link https://files.pythonhosted.org/packages/61/45/acbe2272378c87f0796b1ebcba0673a13acc5ed87eb0d29fa16e1bfe54cf/moleculekit-1.0.8.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.0.8
2024-06-05T15:50:47,608   Found link https://files.pythonhosted.org/packages/72/48/3df4bcf3a3e5ca9c0e05e5486c0a7da3b7d6b3ff49830d473b6e72f02443/moleculekit-1.0.9.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.0.9
2024-06-05T15:50:47,609   Found link https://files.pythonhosted.org/packages/09/29/7e58bdf57dda487be8ab4c3719ebbf31db17ad65232fc9305a20eaa3c90c/moleculekit-1.1.0.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.1.0
2024-06-05T15:50:47,609   Found link https://files.pythonhosted.org/packages/3c/b6/64b6ae76e4b562d453b31fd28678232838949d56f1dafabd12531362de23/moleculekit-1.1.1.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.1.1
2024-06-05T15:50:47,609   Found link https://files.pythonhosted.org/packages/15/f8/fb94ef622b57eea44916cbed8a838efcbbd62c9732879ec4864c3abaf3d0/moleculekit-1.1.2.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.1.2
2024-06-05T15:50:47,609   Found link https://files.pythonhosted.org/packages/85/87/2264a91838fc8d44f1661b9ae462976e2b9b23f002591db7be9287f51d43/moleculekit-1.1.4.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.1.4
2024-06-05T15:50:47,610   Found link https://files.pythonhosted.org/packages/f4/53/156ee257b5781f55228ef884eec2b57cc368dbf37c4654315347af0e7a71/moleculekit-1.1.6.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.1.6
2024-06-05T15:50:47,610   Found link https://files.pythonhosted.org/packages/71/3c/15df00803c890b9d17390a31c60fa2c070a88e8a8c33c79ef10ddf023159/moleculekit-1.1.7.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.1.7
2024-06-05T15:50:47,610   Found link https://files.pythonhosted.org/packages/eb/2e/c50f42aefc5f3510073bd5059723baff738a5ee171174441586000c444dc/moleculekit-1.1.8.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.1.8
2024-06-05T15:50:47,610   Found link https://files.pythonhosted.org/packages/59/b9/6e9913fc67fa6321d5c441eb59a93e257f1fba383848a6bd645a7d427045/moleculekit-1.1.9.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.1.9
2024-06-05T15:50:47,611   Found link https://files.pythonhosted.org/packages/06/90/69685dad023515e231d8da7747793f33c497bb62496c4075e518f230da55/moleculekit-1.2.0.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.2.0
2024-06-05T15:50:47,611   Found link https://files.pythonhosted.org/packages/1a/07/36426e9820ea0ecff884e15fc9ebe413735a2b22a9212cdcbb9b62e56744/moleculekit-1.2.1.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.2.1
2024-06-05T15:50:47,611   Found link https://files.pythonhosted.org/packages/a1/56/2e1ac2fac4f566abf327baf326d17421047e363138c1c132a537a3eaf5ec/moleculekit-1.2.2.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.2.2
2024-06-05T15:50:47,612   Found link https://files.pythonhosted.org/packages/cb/28/b8fa8b94edf207d206627fcb18753ce3fad1450d7d5e5b052daa211b226b/moleculekit-1.2.4.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.2.4
2024-06-05T15:50:47,612   Found link https://files.pythonhosted.org/packages/cb/c9/8d7c9c427863a8e1be9e5487520f26a4ea63a34e735a3c5598f1e8b43cb4/moleculekit-1.2.5.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.2.5
2024-06-05T15:50:47,612   Found link https://files.pythonhosted.org/packages/39/b3/50e46e2780075c4adf93bba603ad047457f3d9cd70a77f4909776ec446b3/moleculekit-1.2.7.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.2.7
2024-06-05T15:50:47,613   Found link https://files.pythonhosted.org/packages/29/f1/10cd916b3024b2efe08c06413dff5938859e01c8bc671cde8bf070758031/moleculekit-1.2.8.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.2.8
2024-06-05T15:50:47,613   Found link https://files.pythonhosted.org/packages/47/55/207179562e46a3cba4a1cb813c1754be6c5a1664a11d1dcffe89b51c1ca4/moleculekit-1.2.9.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.2.9
2024-06-05T15:50:47,613   Found link https://files.pythonhosted.org/packages/2e/1c/a07b4d5f471fc90ba12e88e44675ddbf0ba4b0a658c2fc014491a7a27092/moleculekit-1.3.0.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.3.0
2024-06-05T15:50:47,613   Found link https://files.pythonhosted.org/packages/80/9b/d0375ea58246506494224acf560e8d2da623d1635047089316a01ab146a0/moleculekit-1.3.1.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.3.1
2024-06-05T15:50:47,614   Found link https://files.pythonhosted.org/packages/f9/f6/5808fddfaeeb3c021514c45f1b896329245c2e1c6218a86b9bc9f1904d7d/moleculekit-1.3.3.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.3.3
2024-06-05T15:50:47,614   Found link https://files.pythonhosted.org/packages/0f/87/45be2661273532639b9aef46f7335ef962ac0f4d5a022cad9fae46b3ed76/moleculekit-1.3.4.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.3.4
2024-06-05T15:50:47,614   Found link https://files.pythonhosted.org/packages/0b/c2/d5b36c664c2d4f8736b5dbf06b05d9efeeacd4d488125c8feb0e4efb3594/moleculekit-1.3.5.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.3.5
2024-06-05T15:50:47,614   Found link https://files.pythonhosted.org/packages/30/3d/7f0577f2f4fd87df9160c6c80c49fe7d025f40b9f25c6b6d9ed0bcd2341f/moleculekit-1.3.7.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.3.7
2024-06-05T15:50:47,615   Found link https://files.pythonhosted.org/packages/1a/fd/3788664397288c8169d713da13ae2419a0534a9ee826d1ce718811e27569/moleculekit-1.3.8.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.3.8
2024-06-05T15:50:47,615   Found link https://files.pythonhosted.org/packages/fe/a6/b9b3e9ec27de783731911f111354a9d1e6cd766e47aeff934b769a415311/moleculekit-1.3.9.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.3.9
2024-06-05T15:50:47,615   Found link https://files.pythonhosted.org/packages/fd/8d/5420b8fc8713c9a27e74eb85aab9b758169f739c0d6aca1540d73582aba6/moleculekit-1.4.0.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.4.0
2024-06-05T15:50:47,615   Found link https://files.pythonhosted.org/packages/68/7e/cd023ea3b0a765a65611a8b103d51dbb55fc97bb9df335095d520ad46deb/moleculekit-1.4.1.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.4.1
2024-06-05T15:50:47,616   Found link https://files.pythonhosted.org/packages/21/ce/d98ddf9106565632f876b1b853bb23c64534e65884b9d3d73208c7fe17e6/moleculekit-1.4.2.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.4.2
2024-06-05T15:50:47,616   Found link https://files.pythonhosted.org/packages/f9/12/68450058da1b4f39328ce41f22cfb5a38717147b3e624cb76b225318dd96/moleculekit-1.4.3.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.4.3
2024-06-05T15:50:47,616   Found link https://files.pythonhosted.org/packages/a1/9c/61a877e38393372a16746096dc836e3a24d0fe31240644258396f6ec1dd5/moleculekit-1.4.5-1.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.4.5-1
2024-06-05T15:50:47,617   Found link https://files.pythonhosted.org/packages/65/2b/f8fbac2b196d899066e4d26b78e62adc1f2356734b3de63da153e9b18e44/moleculekit-1.4.6.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.4.6
2024-06-05T15:50:47,617   Found link https://files.pythonhosted.org/packages/6b/80/69b1d49f78060edafdb9a5e49080f189c6d72a7a2a83f2567f7abfaf9fcb/moleculekit-1.4.7.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.4.7
2024-06-05T15:50:47,618   Found link https://files.pythonhosted.org/packages/91/bd/4e692bc271e6a957732a20347e43f0388e12ab60df6717a178b628f18fce/moleculekit-1.4.8.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.4.8
2024-06-05T15:50:47,619   Found link https://files.pythonhosted.org/packages/0b/22/49372d8ecca8baa50e08ca3971786e207825556920bd5b19697d085bf681/moleculekit-1.4.9.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.4.9
2024-06-05T15:50:47,619   Found link https://files.pythonhosted.org/packages/3a/52/c87b6f8651063e38a723e8506788475ecf32f2b2e67fcf42739e8737f120/moleculekit-1.5.0.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.5.0
2024-06-05T15:50:47,620   Found link https://files.pythonhosted.org/packages/e9/64/50b82745c79e8f28fb8c1615e637221dceb4af565af8e785b04b5c9bd7f0/moleculekit-1.5.1.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.5.1
2024-06-05T15:50:47,620   Found link https://files.pythonhosted.org/packages/3d/18/e249854f20e449b9890eca08ef37ccdb87f719b6ac0db8e9d2ca9c4eb890/moleculekit-1.5.2.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.5.2
2024-06-05T15:50:47,621   Found link https://files.pythonhosted.org/packages/3f/e8/860f3b89afd29b5ba405ab028f3d49ac22e95557b6b906e475c2f6558df5/moleculekit-1.5.3.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.5.3
2024-06-05T15:50:47,621   Found link https://files.pythonhosted.org/packages/e7/1e/8f982d3446852e3778250fc8af491eb3ceaf081b891eb7a4936776dfe730/moleculekit-1.5.4.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.5.4
2024-06-05T15:50:47,622   Found link https://files.pythonhosted.org/packages/46/81/f7be4e086eb469d0fda5d9be51c6fe2107d39c4127f64218774c40f5923a/moleculekit-1.5.5.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.5.5
2024-06-05T15:50:47,622   Found link https://files.pythonhosted.org/packages/d1/99/5866f661f25b1168804a5c26ab38edd26a7239d91b84c13fb129c1f84ab6/moleculekit-1.5.6.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.5.6
2024-06-05T15:50:47,623   Found link https://files.pythonhosted.org/packages/25/45/e228ef66e7b03b1613382490f07c3db31c9713e3878eb9766781076b8209/moleculekit-1.5.7.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.5.7
2024-06-05T15:50:47,623   Found link https://files.pythonhosted.org/packages/5e/4a/8e20ee9556cfcdc8c51aac44a054b76db1b9abf8c83124f51521397f7673/moleculekit-1.5.8.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.5.8
2024-06-05T15:50:47,624   Found link https://files.pythonhosted.org/packages/00/79/eafaf1a45594ebe0f5e3e3a775bb8e4635dd46e63a048cc577a4e3c4c29b/moleculekit-1.6.0.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.6.0
2024-06-05T15:50:47,625   Found link https://files.pythonhosted.org/packages/c2/66/b802cbaa73639d3fb24d7aca0a21b932bd6b781103c3aa0662fd27dd64e0/moleculekit-1.6.1.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.6.1
2024-06-05T15:50:47,625   Found link https://files.pythonhosted.org/packages/01/31/1debf4b7c89e0060dc1f7d19ab348e627b9183890a8e443c1ee54ee3bd6c/moleculekit-1.6.4.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.6.4
2024-06-05T15:50:47,626   Found link https://files.pythonhosted.org/packages/d6/3a/77427acaba2c2b4670a4b94ce5cd161b60ac547e812a6337374265f3272d/moleculekit-1.6.5.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.6.5
2024-06-05T15:50:47,626   Found link https://files.pythonhosted.org/packages/75/c9/3ed46001d1cc28d02ee2ee30de3377bc39f9545ea0a7b7932b6c31770879/moleculekit-1.6.6.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.6.6
2024-06-05T15:50:47,627   Found link https://files.pythonhosted.org/packages/b0/eb/47f199ab494f4a3929e1265222e24dcfce4dc2dde54923d1be8e513bf765/moleculekit-1.6.7.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.6.7
2024-06-05T15:50:47,627   Found link https://files.pythonhosted.org/packages/02/62/8710bf8c331f6c5d3320bcd99ce1f53fd72c8ed39767e69fe09127926c58/moleculekit-1.6.8.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.6.8
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2024-06-05T15:50:47,629   Found link https://files.pythonhosted.org/packages/4e/3a/29fb1aa0e3792fef88348885348370f39af453fb75d5505a208068d1c4ac/moleculekit-1.7.1.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.1
2024-06-05T15:50:47,629   Found link https://files.pythonhosted.org/packages/4a/13/dd6711d592d27e604c48830300f5596aafa1bbc479dc5eb49ed9797085eb/moleculekit-1.7.2.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.2
2024-06-05T15:50:47,630   Found link https://files.pythonhosted.org/packages/c7/cb/205d8925276863e2892c2c1ae2747cd4834cd3f174521172670ce43b50b8/moleculekit-1.7.3.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.3
2024-06-05T15:50:47,631   Found link https://files.pythonhosted.org/packages/6f/9e/2bce5993679a3666fd12803b93bb9a4daa59922f0ecdd26e9726df5d7f73/moleculekit-1.7.4.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.4
2024-06-05T15:50:47,631   Found link https://files.pythonhosted.org/packages/fa/63/993d55964a5afc9417ca31ab06a7d08f10b8fb38c63157bef0f350b4bb49/moleculekit-1.7.6.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.6
2024-06-05T15:50:47,632   Found link https://files.pythonhosted.org/packages/9b/3d/351d6444550ae455f20139e1d71ab138449c75b4a9782ac831dc9c6daa76/moleculekit-1.7.7.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.7
2024-06-05T15:50:47,632   Found link https://files.pythonhosted.org/packages/1b/7a/80d740239c506d7eea7cdba7576c503012556338861c10d5d2908e1912f7/moleculekit-1.7.8.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.8
2024-06-05T15:50:47,633   Found link https://files.pythonhosted.org/packages/05/e0/64dd3801f9b9cd011f8093d85201df3b259bab3502b87b6e37edadea0f21/moleculekit-1.7.9.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.9
2024-06-05T15:50:47,633   Found link https://files.pythonhosted.org/packages/0e/fd/650680f6dcf164b179c8a334c56fc7ba97d71519330f03bdc485307b6a0d/moleculekit-1.7.10.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.10
2024-06-05T15:50:47,634   Found link https://files.pythonhosted.org/packages/37/05/3105db0d4a63b49d0f4534b5e9d6a488b96b83b3aac621224338f3a6aa6b/moleculekit-1.7.12.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.12
2024-06-05T15:50:47,634   Found link https://files.pythonhosted.org/packages/08/ec/48d8122fea93c59592ae22dc29f16496087cdf31064793e6da173fcf2e36/moleculekit-1.7.13.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.13
2024-06-05T15:50:47,635   Found link https://files.pythonhosted.org/packages/46/79/442f4846c44e99a4e5d61b09e65cb57ec69b24ae4bf7e8b704f125238c6c/moleculekit-1.7.14.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.14
2024-06-05T15:50:47,635   Found link https://files.pythonhosted.org/packages/fa/fd/aa5c1911df4cf3bee9575fbc1cdbd39bcb1d9164e77c772fa938be672cc0/moleculekit-1.7.15.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.15
2024-06-05T15:50:47,636   Found link https://files.pythonhosted.org/packages/38/fe/74b265e75deb09844035690d506614163cd262a2d6bc7c83b4e2f28d4bb9/moleculekit-1.7.16.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.16
2024-06-05T15:50:47,636   Found link https://files.pythonhosted.org/packages/8b/2f/56c308933a9652bc40c41a53d57509ef38cc3c21d55b6f5570c2d9a865ed/moleculekit-1.7.17.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.17
2024-06-05T15:50:47,637   Found link https://files.pythonhosted.org/packages/96/a3/11b655506ce842ebea0b6d4c86883a538095687cb7bc9c4a179420971bd7/moleculekit-1.8.1.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.1
2024-06-05T15:50:47,637   Found link https://files.pythonhosted.org/packages/9d/d3/ead35117c0f3b3b1be847d561ff31bf59dfde0c49982bff106a3cc3876f0/moleculekit-1.8.2.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.2
2024-06-05T15:50:47,638   Found link https://files.pythonhosted.org/packages/23/e8/3ebe2bfb667296b1c79d4e59fdfb487116bfd8bec579ca242eec7ecad0c2/moleculekit-1.8.3.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.3
2024-06-05T15:50:47,639   Found link https://files.pythonhosted.org/packages/6f/4d/4a0e90a65d79829ae0bec8d857de2f8b7e18b6d60e05daa99cdbed0061c0/moleculekit-1.8.4.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.4
2024-06-05T15:50:47,639   Found link https://files.pythonhosted.org/packages/15/bb/f88884d7710aeb6290c69f180df912ce73beb4975ceea9f58aa28250737c/moleculekit-1.8.5.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.5
2024-06-05T15:50:47,640   Found link https://files.pythonhosted.org/packages/e4/a8/ef9f25e6e42436ceaecfd8bb0aadbf40855976374a46b8cf8d55000fa0a8/moleculekit-1.8.6.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.6
2024-06-05T15:50:47,640   Found link https://files.pythonhosted.org/packages/67/c5/ed682f5ea9a16915b98612e0b274b50303bb912ccb71ab106247e01be8c2/moleculekit-1.8.7.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.7
2024-06-05T15:50:47,641   Found link https://files.pythonhosted.org/packages/23/cd/efd06d75f4a0e866e23156ca3c771c99a22bcfb5f2d1b0f42f853b9cfd27/moleculekit-1.8.10.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.10
2024-06-05T15:50:47,641   Found link https://files.pythonhosted.org/packages/d2/1a/935247798d3097c5093e33b026729b2e218fefd40f58c4b8b8bd3fcf93b4/moleculekit-1.8.13.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.13
2024-06-05T15:50:47,642   Found link https://files.pythonhosted.org/packages/b0/1c/de17759f3cbae5b6b06b60242724a93570b332f657fdeff9e582b6bda391/moleculekit-1.8.14.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.14
2024-06-05T15:50:47,642   Found link https://files.pythonhosted.org/packages/20/a3/7476dceb769dd7bb318d84590a372f1974e978cefb204da16f2b4d99a34e/moleculekit-1.8.15.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.15
2024-06-05T15:50:47,643   Found link https://files.pythonhosted.org/packages/ce/8d/e060616d8e4e03f56d544939f3ccea7f3d665038a66bbf57ba0bcd1f4711/moleculekit-1.8.17.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.17
2024-06-05T15:50:47,643   Found link https://files.pythonhosted.org/packages/36/66/5b4a8da5461b4547e9b3e58f477ddf359701865a7e2ca5b0348fa20f54ae/moleculekit-1.8.18.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.18
2024-06-05T15:50:47,644   Found link https://files.pythonhosted.org/packages/51/33/5a8b10a29ca3c7a893f4a727341611121bc5ec9e2e0004e0c0d4748e33f7/moleculekit-1.8.19.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.19
2024-06-05T15:50:47,645   Found link https://files.pythonhosted.org/packages/0c/02/8cb68afa12c5dac1a7e486d39e9017883f51e17c4fd781898edf79cd2f00/moleculekit-1.8.20.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.20
2024-06-05T15:50:47,645   Found link https://files.pythonhosted.org/packages/65/3f/75e14ea7f71098018974144579774255fc66d1b7f7dae2ff858a87aac1e7/moleculekit-1.8.21.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.21
2024-06-05T15:50:47,646   Found link https://files.pythonhosted.org/packages/2c/2f/d00d1cf86239c509fb4dce470fcaf771e332724034b7db1846332924366a/moleculekit-1.8.22.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.22
2024-06-05T15:50:47,646   Found link https://files.pythonhosted.org/packages/55/ad/3c392a8ef92f6437da30769f6b9770591c79b77604db9aa264d5c0291edf/moleculekit-1.8.23.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.23
2024-06-05T15:50:47,647   Found link https://files.pythonhosted.org/packages/64/72/c2549970c717c236688863287da25f453fbf8b3ea3dee071af9e96be6592/moleculekit-1.8.24.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.24
2024-06-05T15:50:47,647   Found link https://files.pythonhosted.org/packages/f2/d0/2c92a559a74562405f0628bc7880908412790a87c494c9b73e3962c7baa9/moleculekit-1.8.26.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.26
2024-06-05T15:50:47,648   Found link https://files.pythonhosted.org/packages/0e/be/42a9eff89e9e0c3bc08940ead6c991f366ce109bb75ece11cc3b2996d001/moleculekit-1.8.27.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.27
2024-06-05T15:50:47,648   Found link https://files.pythonhosted.org/packages/30/bd/5ed4ddd1b8934c0594027c765bab0013b8081e818e92c2a98462f64d4dcd/moleculekit-1.8.28.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.28
2024-06-05T15:50:47,649   Found link https://files.pythonhosted.org/packages/2a/f9/1d7fe1a09e04049ace7db33faf27c26478ba9674a3cb39d1115fcd1d0679/moleculekit-1.8.29.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.29
2024-06-05T15:50:47,650   Found link https://files.pythonhosted.org/packages/d6/e2/f7f2b1870c62092c3d84ac0055b50305611a1253142cb592babdfcbdb266/moleculekit-1.8.31.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.31
2024-06-05T15:50:47,650   Found link https://files.pythonhosted.org/packages/5a/df/44bc133f3cbda05e621a72b9fef30ecaa96bc88bd5f47136a89b22d82b30/moleculekit-1.8.32.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.32
2024-06-05T15:50:47,651   Found link https://files.pythonhosted.org/packages/2b/34/e2642fe6f54ec67fdba107eb29968217af52f0b6ef1ac69f533164c6584e/moleculekit-1.8.33.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.33
2024-06-05T15:50:47,651 Fetching project page and analyzing links: https://www.piwheels.org/simple/moleculekit/
2024-06-05T15:50:47,651 Getting page https://www.piwheels.org/simple/moleculekit/
2024-06-05T15:50:47,652 Found index url https://www.piwheels.org/simple/
2024-06-05T15:50:47,746 Fetched page https://www.piwheels.org/simple/moleculekit/ as text/html
2024-06-05T15:50:47,843   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.8.33-cp311-cp311-linux_armv6l.whl#sha256=d0cfcf678117cf5ef4f82d9243483dc4716205e56e437386690ac215787c35cf (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
2024-06-05T15:50:47,844   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.8.33-cp311-cp311-linux_armv7l.whl#sha256=d0cfcf678117cf5ef4f82d9243483dc4716205e56e437386690ac215787c35cf (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
2024-06-05T15:50:47,844   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.8.32-cp311-cp311-linux_armv6l.whl#sha256=1cb8ae4cdb11708fcd31f1c3de19ec4fb93bbecf44e8170e8464bc236f166efc (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
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2024-06-05T15:50:47,845   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.8.32-cp39-cp39-linux_armv6l.whl#sha256=088f285bb9579634e6a88a6ce995af058e2091f60ca38a9a71b19acea17e339b (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
2024-06-05T15:50:47,845   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.8.32-cp39-cp39-linux_armv7l.whl#sha256=088f285bb9579634e6a88a6ce995af058e2091f60ca38a9a71b19acea17e339b (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
2024-06-05T15:50:47,845   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.8.31-cp311-cp311-linux_armv6l.whl#sha256=218f8197ef61b4d204fdf063e6c7161b0c1cada6b9072a80ed32467b83651997 (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
2024-06-05T15:50:47,845   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.8.31-cp311-cp311-linux_armv7l.whl#sha256=218f8197ef61b4d204fdf063e6c7161b0c1cada6b9072a80ed32467b83651997 (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
2024-06-05T15:50:47,845   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.8.31-cp39-cp39-linux_armv6l.whl#sha256=0f5cd707ec1b6d1a5e86c8fb1763866bc13d430d94662be1dfa4d74044bfe743 (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
2024-06-05T15:50:47,846   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.8.31-cp39-cp39-linux_armv7l.whl#sha256=0f5cd707ec1b6d1a5e86c8fb1763866bc13d430d94662be1dfa4d74044bfe743 (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
2024-06-05T15:50:47,846   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.8.29-cp311-cp311-linux_armv6l.whl#sha256=ba84e1392124eb438846b78998fb0f26e8d9942c644dd5574f49d9eb9b0f6a87 (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
2024-06-05T15:50:47,846   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.8.29-cp311-cp311-linux_armv7l.whl#sha256=ba84e1392124eb438846b78998fb0f26e8d9942c644dd5574f49d9eb9b0f6a87 (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
2024-06-05T15:50:47,846   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.8.29-cp39-cp39-linux_armv6l.whl#sha256=44fb6340ac1ed849bf5c52a43b7b0334c3869777bcdec4444fc6ac0303a7d18b (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
2024-06-05T15:50:47,846   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.8.29-cp39-cp39-linux_armv7l.whl#sha256=44fb6340ac1ed849bf5c52a43b7b0334c3869777bcdec4444fc6ac0303a7d18b (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
2024-06-05T15:50:47,847   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.8.28-cp311-cp311-linux_armv6l.whl#sha256=0bd78844c5d2c1631992bbe75050af4b5c6a7c95431e8637867fb30717804582 (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
2024-06-05T15:50:47,847   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.8.28-cp311-cp311-linux_armv7l.whl#sha256=0bd78844c5d2c1631992bbe75050af4b5c6a7c95431e8637867fb30717804582 (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
2024-06-05T15:50:47,847   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.8.28-cp39-cp39-linux_armv6l.whl#sha256=04c1c3834e4447c5f50b16abf23b1e9f68e8e832712398c35671d844fbf2f35e (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
2024-06-05T15:50:47,847   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.8.28-cp39-cp39-linux_armv7l.whl#sha256=04c1c3834e4447c5f50b16abf23b1e9f68e8e832712398c35671d844fbf2f35e (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
2024-06-05T15:50:47,847   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.8.27-cp311-cp311-linux_armv6l.whl#sha256=8a573033f33f4f16ba75cf9a05329b6842b25a3947b5cfd1a5c439e7a837fa1a (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
2024-06-05T15:50:47,847   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.8.27-cp311-cp311-linux_armv7l.whl#sha256=8a573033f33f4f16ba75cf9a05329b6842b25a3947b5cfd1a5c439e7a837fa1a (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
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2024-06-05T15:50:47,887   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.7-cp37-cp37m-linux_armv7l.whl#sha256=8e98ed7e4f43a05739fbb98f22bc0aeabe5d6a76673b8883a4fa88c3762ba080 (from https://www.piwheels.org/simple/moleculekit/)
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2024-06-05T15:50:47,888   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.5-cp37-cp37m-linux_armv6l.whl#sha256=30013f87dd3dc0c9b99cc9862ac0d0be618fe63faa7c7c4623be9cdd86396624 (from https://www.piwheels.org/simple/moleculekit/)
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2024-06-05T15:50:47,888   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.5-cp39-cp39-linux_armv6l.whl#sha256=f42eb6c315d3242355c8e36090f1f77ed92b768cefb595178e81eb89fa5a79d5 (from https://www.piwheels.org/simple/moleculekit/)
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2024-06-05T15:50:47,888   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.4-cp37-cp37m-linux_armv6l.whl#sha256=a30adf43b2972eb0763ce00b18dc4dffb61a74ac1da2391652cf53f73dba67ce (from https://www.piwheels.org/simple/moleculekit/)
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2024-06-05T15:50:47,889   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.3-cp39-cp39-linux_armv6l.whl#sha256=c666ea91f79ecf6c6d99ca251e7f938e7e82208a01a91d39b827ba64eee4ce41 (from https://www.piwheels.org/simple/moleculekit/)
2024-06-05T15:50:47,889   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.3-cp39-cp39-linux_armv7l.whl#sha256=c666ea91f79ecf6c6d99ca251e7f938e7e82208a01a91d39b827ba64eee4ce41 (from https://www.piwheels.org/simple/moleculekit/)
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2024-06-05T15:50:47,890   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.3-cp37-cp37m-linux_armv7l.whl#sha256=286faceca4683f35ce8e9aeefefdecee1c02150dfc9b7deb62015ce17f3f557c (from https://www.piwheels.org/simple/moleculekit/)
2024-06-05T15:50:47,890   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.2-cp37-cp37m-linux_armv6l.whl#sha256=e7e709fde2552ca5cb602bf420ed89d740b1e75bd32c879ee33ffe3b747b109a (from https://www.piwheels.org/simple/moleculekit/)
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2024-06-05T15:50:47,890   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.2-cp39-cp39-linux_armv7l.whl#sha256=390edc2399f77605c97d9fc8db3b63f282ba297c67fe9514db91ebec945fa2d7 (from https://www.piwheels.org/simple/moleculekit/)
2024-06-05T15:50:47,891   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.1-cp39-cp39-linux_armv6l.whl#sha256=aed227f0c49804421d71b6c949c0d24367a74207b8f855c59e4e73a89b5a93ed (from https://www.piwheels.org/simple/moleculekit/)
2024-06-05T15:50:47,891   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.1-cp39-cp39-linux_armv7l.whl#sha256=aed227f0c49804421d71b6c949c0d24367a74207b8f855c59e4e73a89b5a93ed (from https://www.piwheels.org/simple/moleculekit/)
2024-06-05T15:50:47,891   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.1-cp37-cp37m-linux_armv6l.whl#sha256=ad67f1f622d2a2a49358691e3e784e48277aa09cf1f984ed60e847892a3413d7 (from https://www.piwheels.org/simple/moleculekit/)
2024-06-05T15:50:47,891   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.1-cp37-cp37m-linux_armv7l.whl#sha256=ad67f1f622d2a2a49358691e3e784e48277aa09cf1f984ed60e847892a3413d7 (from https://www.piwheels.org/simple/moleculekit/)
2024-06-05T15:50:47,891   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.0-cp37-cp37m-linux_armv6l.whl#sha256=ab05d1bc06d0d249cbb4871d51e6dca4b9e8474288d86326bd7dd603b9b99820 (from https://www.piwheels.org/simple/moleculekit/)
2024-06-05T15:50:47,891   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.0-cp37-cp37m-linux_armv7l.whl#sha256=ab05d1bc06d0d249cbb4871d51e6dca4b9e8474288d86326bd7dd603b9b99820 (from https://www.piwheels.org/simple/moleculekit/)
2024-06-05T15:50:47,892   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.0-cp39-cp39-linux_armv6l.whl#sha256=7f76858d50e6bb4611f32f053be82003c583d01ad83aa44b6f220dce89a7856f (from https://www.piwheels.org/simple/moleculekit/)
2024-06-05T15:50:47,892   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.0-cp39-cp39-linux_armv7l.whl#sha256=7f76858d50e6bb4611f32f053be82003c583d01ad83aa44b6f220dce89a7856f (from https://www.piwheels.org/simple/moleculekit/)
2024-06-05T15:50:47,892   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.9-cp37-cp37m-linux_armv6l.whl#sha256=34809734c61c1fcc4c4de1857dadfb84e726cbfe0dd0b60fce249166d29a3bb2 (from https://www.piwheels.org/simple/moleculekit/)
2024-06-05T15:50:47,892   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.9-cp37-cp37m-linux_armv7l.whl#sha256=34809734c61c1fcc4c4de1857dadfb84e726cbfe0dd0b60fce249166d29a3bb2 (from https://www.piwheels.org/simple/moleculekit/)
2024-06-05T15:50:47,892   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.9-cp39-cp39-linux_armv6l.whl#sha256=0f20a256b92c66dbaac370cf1a01b885b10f1371beacaec65ec35ce8ac935afb (from https://www.piwheels.org/simple/moleculekit/)
2024-06-05T15:50:47,893   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.9-cp39-cp39-linux_armv7l.whl#sha256=0f20a256b92c66dbaac370cf1a01b885b10f1371beacaec65ec35ce8ac935afb (from https://www.piwheels.org/simple/moleculekit/)
2024-06-05T15:50:47,893   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.6-cp37-cp37m-linux_armv6l.whl#sha256=93f57ab9c01697fb9f28ed39e4c5c32828e862bf410f556fdbc43c7a72825cb2 (from https://www.piwheels.org/simple/moleculekit/)
2024-06-05T15:50:47,893   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.6-cp37-cp37m-linux_armv7l.whl#sha256=93f57ab9c01697fb9f28ed39e4c5c32828e862bf410f556fdbc43c7a72825cb2 (from https://www.piwheels.org/simple/moleculekit/)
2024-06-05T15:50:47,893   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.6-cp39-cp39-linux_armv6l.whl#sha256=a8a1cb7f5b851f5f58273e5d12aa871e5086f6bfd844f33f0b4bf20c83f429ec (from https://www.piwheels.org/simple/moleculekit/)
2024-06-05T15:50:47,893   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.6-cp39-cp39-linux_armv7l.whl#sha256=a8a1cb7f5b851f5f58273e5d12aa871e5086f6bfd844f33f0b4bf20c83f429ec (from https://www.piwheels.org/simple/moleculekit/)
2024-06-05T15:50:47,894   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.5-cp37-cp37m-linux_armv6l.whl#sha256=25d1bdfd25f377e21e8a522d9f3cd2ce3896cf857957c8ec876c69f4de8d53f5 (from https://www.piwheels.org/simple/moleculekit/)
2024-06-05T15:50:47,894   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.5-cp37-cp37m-linux_armv7l.whl#sha256=25d1bdfd25f377e21e8a522d9f3cd2ce3896cf857957c8ec876c69f4de8d53f5 (from https://www.piwheels.org/simple/moleculekit/)
2024-06-05T15:50:47,894   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.5-cp39-cp39-linux_armv6l.whl#sha256=de79a8099ce28793ecc89cf8dfbcb6542a270d00290c96903280f704e2ec22e7 (from https://www.piwheels.org/simple/moleculekit/)
2024-06-05T15:50:47,894   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.5-cp39-cp39-linux_armv7l.whl#sha256=de79a8099ce28793ecc89cf8dfbcb6542a270d00290c96903280f704e2ec22e7 (from https://www.piwheels.org/simple/moleculekit/)
2024-06-05T15:50:47,894   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.3-cp37-cp37m-linux_armv6l.whl#sha256=2d64935710bb05965f486f3bd9f258d8d479dc5c00dc1535ba5e285c8786dcf1 (from https://www.piwheels.org/simple/moleculekit/)
2024-06-05T15:50:47,894   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.3-cp37-cp37m-linux_armv7l.whl#sha256=2d64935710bb05965f486f3bd9f258d8d479dc5c00dc1535ba5e285c8786dcf1 (from https://www.piwheels.org/simple/moleculekit/)
2024-06-05T15:50:47,895   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.3-cp39-cp39-linux_armv6l.whl#sha256=c1983524eecc8638287c4a1e09dda961635e861bf6f9342dc566a9f9a4c0b771 (from https://www.piwheels.org/simple/moleculekit/)
2024-06-05T15:50:47,895   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.3-cp39-cp39-linux_armv7l.whl#sha256=c1983524eecc8638287c4a1e09dda961635e861bf6f9342dc566a9f9a4c0b771 (from https://www.piwheels.org/simple/moleculekit/)
2024-06-05T15:50:47,895   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.2-cp39-cp39-linux_armv6l.whl#sha256=24cfa04ff95ecb68f6d261ba4176e979846a0424ba781a1e314ca233c5206ae7 (from https://www.piwheels.org/simple/moleculekit/)
2024-06-05T15:50:47,895   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.2-cp39-cp39-linux_armv7l.whl#sha256=24cfa04ff95ecb68f6d261ba4176e979846a0424ba781a1e314ca233c5206ae7 (from https://www.piwheels.org/simple/moleculekit/)
2024-06-05T15:50:47,895   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.2-cp37-cp37m-linux_armv6l.whl#sha256=3fa03496ffbd230b85c032f9e1ba3129efbd4c37f6509c6cfef258ce69ed6925 (from https://www.piwheels.org/simple/moleculekit/)
2024-06-05T15:50:47,896   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.2-cp37-cp37m-linux_armv7l.whl#sha256=3fa03496ffbd230b85c032f9e1ba3129efbd4c37f6509c6cfef258ce69ed6925 (from https://www.piwheels.org/simple/moleculekit/)
2024-06-05T15:50:47,896   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.1-cp37-cp37m-linux_armv6l.whl#sha256=584155aa2ddfa324fcd872934f8b25a296c40b34797209bb754f4a641a5b27eb (from https://www.piwheels.org/simple/moleculekit/)
2024-06-05T15:50:47,896   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.1-cp37-cp37m-linux_armv7l.whl#sha256=584155aa2ddfa324fcd872934f8b25a296c40b34797209bb754f4a641a5b27eb (from https://www.piwheels.org/simple/moleculekit/)
2024-06-05T15:50:47,896   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.1-cp39-cp39-linux_armv6l.whl#sha256=41b03e81b9cd75c716643741a53b8d4d5aeb1633b5e07091c1a7355b6b44d233 (from https://www.piwheels.org/simple/moleculekit/)
2024-06-05T15:50:47,896   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.1-cp39-cp39-linux_armv7l.whl#sha256=41b03e81b9cd75c716643741a53b8d4d5aeb1633b5e07091c1a7355b6b44d233 (from https://www.piwheels.org/simple/moleculekit/)
2024-06-05T15:50:47,896   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.0-cp37-cp37m-linux_armv6l.whl#sha256=b0ac5fea57fee9d962de25688ffde053c705daa15588886ea6aa7d5ab0986077 (from https://www.piwheels.org/simple/moleculekit/)
2024-06-05T15:50:47,897   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.0-cp37-cp37m-linux_armv7l.whl#sha256=b0ac5fea57fee9d962de25688ffde053c705daa15588886ea6aa7d5ab0986077 (from https://www.piwheels.org/simple/moleculekit/)
2024-06-05T15:50:47,897   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.0-cp39-cp39-linux_armv6l.whl#sha256=1b6361e98ea6ec0f3a7a4cce9ec9569a117c26deb95d0ce2bcea9d6f1f38d503 (from https://www.piwheels.org/simple/moleculekit/)
2024-06-05T15:50:47,897   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.0-cp39-cp39-linux_armv7l.whl#sha256=1b6361e98ea6ec0f3a7a4cce9ec9569a117c26deb95d0ce2bcea9d6f1f38d503 (from https://www.piwheels.org/simple/moleculekit/)
2024-06-05T15:50:47,897   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.9-cp37-cp37m-linux_armv6l.whl#sha256=a6ee5c9ac5b2648bb87ca08a6491d955004770b58180224d6d24bdb8cec17458 (from https://www.piwheels.org/simple/moleculekit/)
2024-06-05T15:50:47,897   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.9-cp37-cp37m-linux_armv7l.whl#sha256=a6ee5c9ac5b2648bb87ca08a6491d955004770b58180224d6d24bdb8cec17458 (from https://www.piwheels.org/simple/moleculekit/)
2024-06-05T15:50:47,898   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.9-cp39-cp39-linux_armv6l.whl#sha256=223cbac9f53d732be3d157f8e68c124c79439d057ec079594c681d7c5327f342 (from https://www.piwheels.org/simple/moleculekit/)
2024-06-05T15:50:47,898   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.9-cp39-cp39-linux_armv7l.whl#sha256=223cbac9f53d732be3d157f8e68c124c79439d057ec079594c681d7c5327f342 (from https://www.piwheels.org/simple/moleculekit/)
2024-06-05T15:50:47,898   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.8-cp37-cp37m-linux_armv6l.whl#sha256=19e3b710f4af1a0cb530060979c4216d87f0bd8a71e9f41824cf3565abbcbbdb (from https://www.piwheels.org/simple/moleculekit/)
2024-06-05T15:50:47,898   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.8-cp37-cp37m-linux_armv7l.whl#sha256=19e3b710f4af1a0cb530060979c4216d87f0bd8a71e9f41824cf3565abbcbbdb (from https://www.piwheels.org/simple/moleculekit/)
2024-06-05T15:50:47,898   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.8-cp39-cp39-linux_armv6l.whl#sha256=c18e44dbd9cf047134d440ff4fbb18722a3fdb0f348d431e8b7bed7dd398bd6e (from https://www.piwheels.org/simple/moleculekit/)
2024-06-05T15:50:47,899   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.8-cp39-cp39-linux_armv7l.whl#sha256=c18e44dbd9cf047134d440ff4fbb18722a3fdb0f348d431e8b7bed7dd398bd6e (from https://www.piwheels.org/simple/moleculekit/)
2024-06-05T15:50:47,899   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.7-cp37-cp37m-linux_armv6l.whl#sha256=8e63b6afb6715f46aae20e77b81958cdc652a7b1b6d294c5d559f7f06d5a5106 (from https://www.piwheels.org/simple/moleculekit/)
2024-06-05T15:50:47,899   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.7-cp37-cp37m-linux_armv7l.whl#sha256=8e63b6afb6715f46aae20e77b81958cdc652a7b1b6d294c5d559f7f06d5a5106 (from https://www.piwheels.org/simple/moleculekit/)
2024-06-05T15:50:47,899   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.7-cp39-cp39-linux_armv6l.whl#sha256=53a48e2a1781a9ae00e1f905778bad58715b08cff2ed4605148de1e481c9d50e (from https://www.piwheels.org/simple/moleculekit/)
2024-06-05T15:50:47,899   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.7-cp39-cp39-linux_armv7l.whl#sha256=53a48e2a1781a9ae00e1f905778bad58715b08cff2ed4605148de1e481c9d50e (from https://www.piwheels.org/simple/moleculekit/)
2024-06-05T15:50:47,899   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.6-cp37-cp37m-linux_armv6l.whl#sha256=a85d0cfa7da9e3593e97f1c63822eb0a9733744fdeb19c3bbd09e1f4242e1d91 (from https://www.piwheels.org/simple/moleculekit/)
2024-06-05T15:50:47,900   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.6-cp37-cp37m-linux_armv7l.whl#sha256=a85d0cfa7da9e3593e97f1c63822eb0a9733744fdeb19c3bbd09e1f4242e1d91 (from https://www.piwheels.org/simple/moleculekit/)
2024-06-05T15:50:47,900   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.6-cp39-cp39-linux_armv6l.whl#sha256=d5e470ed8514697a92a69cccdc99ddf6da22ddde2cc24b3e6ed949645778116f (from https://www.piwheels.org/simple/moleculekit/)
2024-06-05T15:50:47,900   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.6-cp39-cp39-linux_armv7l.whl#sha256=d5e470ed8514697a92a69cccdc99ddf6da22ddde2cc24b3e6ed949645778116f (from https://www.piwheels.org/simple/moleculekit/)
2024-06-05T15:50:47,900   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.5-cp311-cp311-linux_armv6l.whl#sha256=901c091adc4fc8b89c9de8f139d92aeffbfb6dc91799f2f9019f61646044ddd7 (from https://www.piwheels.org/simple/moleculekit/)
2024-06-05T15:50:47,900   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.5-cp311-cp311-linux_armv7l.whl#sha256=901c091adc4fc8b89c9de8f139d92aeffbfb6dc91799f2f9019f61646044ddd7 (from https://www.piwheels.org/simple/moleculekit/)
2024-06-05T15:50:47,901   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.5-cp37-cp37m-linux_armv6l.whl#sha256=2670c23b960766e0d52c54881bf4a8a663345f17190e380f84a273d51c8cdb3f (from https://www.piwheels.org/simple/moleculekit/)
2024-06-05T15:50:47,901   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.5-cp37-cp37m-linux_armv7l.whl#sha256=2670c23b960766e0d52c54881bf4a8a663345f17190e380f84a273d51c8cdb3f (from https://www.piwheels.org/simple/moleculekit/)
2024-06-05T15:50:47,901   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.5-cp39-cp39-linux_armv6l.whl#sha256=55bb6252b29c31ce9b46ca6dc68ed50a4fbe0e44a1b3f8f6f57b13faf1c939c1 (from https://www.piwheels.org/simple/moleculekit/)
2024-06-05T15:50:47,901   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.5-cp39-cp39-linux_armv7l.whl#sha256=55bb6252b29c31ce9b46ca6dc68ed50a4fbe0e44a1b3f8f6f57b13faf1c939c1 (from https://www.piwheels.org/simple/moleculekit/)
2024-06-05T15:50:47,901   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.4-cp37-cp37m-linux_armv6l.whl#sha256=c59aab79b14443a5c4194c3a08c69a2f1a98abedfda3217c0b15e5f694cb8dc3 (from https://www.piwheels.org/simple/moleculekit/)
2024-06-05T15:50:47,901   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.4-cp37-cp37m-linux_armv7l.whl#sha256=c59aab79b14443a5c4194c3a08c69a2f1a98abedfda3217c0b15e5f694cb8dc3 (from https://www.piwheels.org/simple/moleculekit/)
2024-06-05T15:50:47,902   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.4-cp39-cp39-linux_armv6l.whl#sha256=8c575ac103cbab0a21e8ac9ee5d64f45634da6dcfa639e87f54e4afd333fe22f (from https://www.piwheels.org/simple/moleculekit/)
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2024-06-05T15:50:47,911 Skipping link: not a file: https://www.piwheels.org/simple/moleculekit/
2024-06-05T15:50:47,911 Skipping link: not a file: https://pypi.org/simple/moleculekit/
2024-06-05T15:50:47,954 Given no hashes to check 1 links for project 'moleculekit': discarding no candidates
2024-06-05T15:50:47,972 Collecting moleculekit==1.8.33
2024-06-05T15:50:47,974   Created temporary directory: /tmp/pip-unpack-pga_hqjy
2024-06-05T15:50:48,017   Downloading moleculekit-1.8.33.tar.gz (6.8 MB)
2024-06-05T15:50:50,621   Added moleculekit==1.8.33 from https://files.pythonhosted.org/packages/2b/34/e2642fe6f54ec67fdba107eb29968217af52f0b6ef1ac69f533164c6584e/moleculekit-1.8.33.tar.gz to build tracker '/tmp/pip-build-tracker-zn9uxige'
2024-06-05T15:50:50,630   Created temporary directory: /tmp/pip-build-env-__t4ei7e
2024-06-05T15:50:50,640   Installing build dependencies: started
2024-06-05T15:50:50,641   Running command pip subprocess to install build dependencies
2024-06-05T15:50:51,836   Using pip 24.0 from /usr/local/lib/python3.9/dist-packages/pip (python 3.9)
2024-06-05T15:50:52,377   Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2024-06-05T15:50:53,928   Collecting setuptools
2024-06-05T15:50:53,945     Using cached https://www.piwheels.org/simple/setuptools/setuptools-70.0.0-py3-none-any.whl (863 kB)
2024-06-05T15:50:55,032   Collecting numpy>=1.18.5
2024-06-05T15:50:55,049     Using cached https://www.piwheels.org/simple/numpy/numpy-1.26.4-cp39-cp39-linux_armv7l.whl (5.6 MB)
2024-06-05T15:50:56,729   Collecting Cython>=0.29.21
2024-06-05T15:50:56,745     Using cached https://www.piwheels.org/simple/cython/Cython-3.0.10-cp39-cp39-linux_armv7l.whl (10.7 MB)
2024-06-05T15:50:57,179   Collecting toml
2024-06-05T15:50:57,200     Using cached https://www.piwheels.org/simple/toml/toml-0.10.2-py2.py3-none-any.whl (16 kB)
2024-06-05T15:50:57,322   Collecting versioneer==0.28 (from versioneer[toml]==0.28)
2024-06-05T15:50:57,335     Downloading https://www.piwheels.org/simple/versioneer/versioneer-0.28-py3-none-any.whl (45 kB)
2024-06-05T15:50:57,357        ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 45.3/45.3 kB 3.2 MB/s eta 0:00:00
2024-06-05T15:50:57,489   Collecting tomli (from versioneer[toml]==0.28)
2024-06-05T15:50:57,506     Using cached https://www.piwheels.org/simple/tomli/tomli-2.0.1-py3-none-any.whl (12 kB)
2024-06-05T15:50:59,329   Installing collected packages: versioneer, tomli, toml, setuptools, numpy, Cython
2024-06-05T15:50:59,366     Creating /tmp/pip-build-env-__t4ei7e/overlay/bin
2024-06-05T15:50:59,369     changing mode of /tmp/pip-build-env-__t4ei7e/overlay/bin/versioneer to 755
2024-06-05T15:51:10,844     changing mode of /tmp/pip-build-env-__t4ei7e/overlay/bin/f2py to 755
2024-06-05T15:51:14,684     changing mode of /tmp/pip-build-env-__t4ei7e/overlay/bin/cygdb to 755
2024-06-05T15:51:14,687     changing mode of /tmp/pip-build-env-__t4ei7e/overlay/bin/cython to 755
2024-06-05T15:51:14,689     changing mode of /tmp/pip-build-env-__t4ei7e/overlay/bin/cythonize to 755
2024-06-05T15:51:14,715   Successfully installed Cython-3.0.10 numpy-1.26.4 setuptools-70.0.0 toml-0.10.2 tomli-2.0.1 versioneer-0.28
2024-06-05T15:51:15,359   Installing build dependencies: finished with status 'done'
2024-06-05T15:51:15,364   Getting requirements to build wheel: started
2024-06-05T15:51:15,365   Running command Getting requirements to build wheel
2024-06-05T15:51:54,133   warning: moleculekit/wrapping/wrapping.pyx:47:4: Unreachable code
2024-06-05T15:52:03,455   Compiling moleculekit/interactions/hbonds/hbonds.pyx because it depends on /tmp/pip-build-env-__t4ei7e/overlay/lib/python3.9/site-packages/Cython/Includes/libcpp/vector.pxd.
2024-06-05T15:52:03,456   Compiling moleculekit/interactions/pipi/pipi.pyx because it depends on /tmp/pip-build-env-__t4ei7e/overlay/lib/python3.9/site-packages/Cython/Includes/libcpp/vector.pxd.
2024-06-05T15:52:03,456   Compiling moleculekit/interactions/cationpi/cationpi.pyx because it depends on /tmp/pip-build-env-__t4ei7e/overlay/lib/python3.9/site-packages/Cython/Includes/libcpp/vector.pxd.
2024-06-05T15:52:03,456   Compiling moleculekit/interactions/sigmahole/sigmahole.pyx because it depends on /tmp/pip-build-env-__t4ei7e/overlay/lib/python3.9/site-packages/Cython/Includes/libcpp/vector.pxd.
2024-06-05T15:52:03,456   Compiling moleculekit/wrapping/wrapping.pyx because it depends on /tmp/pip-build-env-__t4ei7e/overlay/lib/python3.9/site-packages/Cython/Includes/libcpp/vector.pxd.
2024-06-05T15:52:03,456   Compiling moleculekit/bondguesser_utils/bondguesser_utils.pyx because it depends on /tmp/pip-build-env-__t4ei7e/overlay/lib/python3.9/site-packages/Cython/Includes/libcpp/vector.pxd.
2024-06-05T15:52:03,456   Compiling moleculekit/atomselect_utils/atomselect_utils.pyx because it depends on /tmp/pip-build-env-__t4ei7e/overlay/lib/python3.9/site-packages/Cython/Includes/libcpp/vector.pxd.
2024-06-05T15:52:03,456   Compiling moleculekit/distance_utils/distance_utils.pyx because it depends on /tmp/pip-build-env-__t4ei7e/overlay/lib/python3.9/site-packages/Cython/Includes/libcpp/vector.pxd.
2024-06-05T15:52:03,457   Compiling moleculekit/occupancy_utils/occupancy_utils.pyx because it depends on /tmp/pip-build-env-__t4ei7e/overlay/lib/python3.9/site-packages/Cython/Includes/libcpp/vector.pxd.
2024-06-05T15:52:03,457   Compiling moleculekit/cython_utils/cython_utils.pyx because it depends on /tmp/pip-build-env-__t4ei7e/overlay/lib/python3.9/site-packages/Cython/Includes/libcpp/vector.pxd.
2024-06-05T15:52:03,457   Compiling moleculekit/fileformats/xtc/xtc.pyx because it depends on /tmp/pip-build-env-__t4ei7e/overlay/lib/python3.9/site-packages/Cython/Includes/libc/string.pxd.
2024-06-05T15:52:03,457   Compiling moleculekit/fileformats/xtc/trr.pyx because it depends on /tmp/pip-build-env-__t4ei7e/overlay/lib/python3.9/site-packages/Cython/Includes/libc/string.pxd.
2024-06-05T15:52:03,457   Compiling moleculekit/fileformats/dcd/dcd.pyx because it depends on /tmp/pip-build-env-__t4ei7e/overlay/lib/python3.9/site-packages/Cython/Includes/libc/string.pxd.
2024-06-05T15:52:03,457   Compiling moleculekit/fileformats/binpos/binpos.pyx because it depends on /tmp/pip-build-env-__t4ei7e/overlay/lib/python3.9/site-packages/Cython/Includes/libc/string.pxd.
2024-06-05T15:52:03,458   Compiling moleculekit/tmalign/tmalign_util.pyx because it depends on /tmp/pip-build-env-__t4ei7e/overlay/lib/python3.9/site-packages/Cython/Includes/libcpp/vector.pxd.
2024-06-05T15:52:03,458   [ 1/15] Cythonizing moleculekit/atomselect_utils/atomselect_utils.pyx
2024-06-05T15:52:03,458   [ 2/15] Cythonizing moleculekit/bondguesser_utils/bondguesser_utils.pyx
2024-06-05T15:52:03,458   [ 3/15] Cythonizing moleculekit/cython_utils/cython_utils.pyx
2024-06-05T15:52:03,458   [ 4/15] Cythonizing moleculekit/distance_utils/distance_utils.pyx
2024-06-05T15:52:03,458   [ 5/15] Cythonizing moleculekit/fileformats/dcd/dcd.pyx
2024-06-05T15:52:03,458   [ 6/15] Cythonizing moleculekit/interactions/cationpi/cationpi.pyx
2024-06-05T15:52:03,458   [ 7/15] Cythonizing moleculekit/interactions/hbonds/hbonds.pyx
2024-06-05T15:52:03,459   [ 8/15] Cythonizing moleculekit/interactions/pipi/pipi.pyx
2024-06-05T15:52:03,459   [ 9/15] Cythonizing moleculekit/interactions/sigmahole/sigmahole.pyx
2024-06-05T15:52:03,459   [10/15] Cythonizing moleculekit/occupancy_utils/occupancy_utils.pyx
2024-06-05T15:52:03,459   [11/15] Cythonizing moleculekit/tmalign/tmalign_util.pyx
2024-06-05T15:52:03,459   [12/15] Cythonizing moleculekit/wrapping/wrapping.pyx
2024-06-05T15:52:03,459   [13/15] Cythonizing moleculekit/fileformats/binpos/binpos.pyx
2024-06-05T15:52:03,459   [14/15] Cythonizing moleculekit/fileformats/xtc/trr.pyx
2024-06-05T15:52:03,460   [15/15] Cythonizing moleculekit/fileformats/xtc/xtc.pyx
2024-06-05T15:52:03,771   running egg_info
2024-06-05T15:52:03,777   writing moleculekit.egg-info/PKG-INFO
2024-06-05T15:52:03,782   writing dependency_links to moleculekit.egg-info/dependency_links.txt
2024-06-05T15:52:03,784   writing requirements to moleculekit.egg-info/requires.txt
2024-06-05T15:52:03,786   writing top-level names to moleculekit.egg-info/top_level.txt
2024-06-05T15:52:03,819   dependency /tmp/pip-build-env-__t4ei7e/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-06-05T15:52:03,819   dependency /tmp/pip-build-env-__t4ei7e/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-06-05T15:52:03,819   dependency /tmp/pip-build-env-__t4ei7e/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-06-05T15:52:03,819   dependency /tmp/pip-build-env-__t4ei7e/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-06-05T15:52:03,820   dependency /tmp/pip-build-env-__t4ei7e/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-06-05T15:52:03,820   dependency /tmp/pip-build-env-__t4ei7e/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-06-05T15:52:03,820   dependency /tmp/pip-build-env-__t4ei7e/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-06-05T15:52:03,820   dependency /tmp/pip-build-env-__t4ei7e/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-06-05T15:52:03,820   dependency /tmp/pip-build-env-__t4ei7e/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-06-05T15:52:03,820   dependency /tmp/pip-build-env-__t4ei7e/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-06-05T15:52:03,820   dependency /tmp/pip-build-env-__t4ei7e/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-06-05T15:52:03,821   dependency /tmp/pip-build-env-__t4ei7e/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-06-05T15:52:03,821   dependency /tmp/pip-build-env-__t4ei7e/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-06-05T15:52:03,821   dependency /tmp/pip-build-env-__t4ei7e/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-06-05T15:52:03,821   dependency /tmp/pip-build-env-__t4ei7e/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-06-05T15:52:03,821   dependency /tmp/pip-build-env-__t4ei7e/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-06-05T15:52:03,821   dependency /tmp/pip-build-env-__t4ei7e/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-06-05T15:52:03,821   dependency /tmp/pip-build-env-__t4ei7e/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-06-05T15:52:03,821   dependency /tmp/pip-build-env-__t4ei7e/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-06-05T15:52:03,822   dependency /tmp/pip-build-env-__t4ei7e/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-06-05T15:52:03,822   dependency /tmp/pip-build-env-__t4ei7e/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-06-05T15:52:03,822   dependency /tmp/pip-build-env-__t4ei7e/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-06-05T15:52:03,822   dependency /tmp/pip-build-env-__t4ei7e/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-06-05T15:52:03,822   dependency /tmp/pip-build-env-__t4ei7e/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-06-05T15:52:03,822   dependency /tmp/pip-build-env-__t4ei7e/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-06-05T15:52:03,822   dependency /tmp/pip-build-env-__t4ei7e/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-06-05T15:52:03,823   dependency /tmp/pip-build-env-__t4ei7e/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-06-05T15:52:03,823   dependency /tmp/pip-build-env-__t4ei7e/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-06-05T15:52:03,823   dependency /tmp/pip-build-env-__t4ei7e/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-06-05T15:52:03,823   dependency /tmp/pip-build-env-__t4ei7e/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-06-05T15:52:03,823   dependency /tmp/pip-build-env-__t4ei7e/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-06-05T15:52:03,823   dependency /tmp/pip-build-env-__t4ei7e/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-06-05T15:52:03,823   dependency /tmp/pip-build-env-__t4ei7e/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-06-05T15:52:03,824   dependency /tmp/pip-build-env-__t4ei7e/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-06-05T15:52:03,824   dependency /tmp/pip-build-env-__t4ei7e/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-06-05T15:52:03,824   dependency /tmp/pip-build-env-__t4ei7e/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-06-05T15:52:03,824   dependency /tmp/pip-build-env-__t4ei7e/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-06-05T15:52:03,824   dependency /tmp/pip-build-env-__t4ei7e/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-06-05T15:52:03,824   dependency /tmp/pip-build-env-__t4ei7e/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-06-05T15:52:03,824   dependency /tmp/pip-build-env-__t4ei7e/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-06-05T15:52:03,824   dependency /tmp/pip-build-env-__t4ei7e/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-06-05T15:52:03,825   dependency /tmp/pip-build-env-__t4ei7e/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-06-05T15:52:03,825   dependency /tmp/pip-build-env-__t4ei7e/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-06-05T15:52:03,825   dependency /tmp/pip-build-env-__t4ei7e/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-06-05T15:52:03,825   dependency /tmp/pip-build-env-__t4ei7e/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-06-05T15:52:03,825   dependency /tmp/pip-build-env-__t4ei7e/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-06-05T15:52:03,825   dependency /tmp/pip-build-env-__t4ei7e/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-06-05T15:52:03,825   dependency /tmp/pip-build-env-__t4ei7e/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-06-05T15:52:03,825   dependency /tmp/pip-build-env-__t4ei7e/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-06-05T15:52:03,826   dependency /tmp/pip-build-env-__t4ei7e/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-06-05T15:52:03,826   dependency /tmp/pip-build-env-__t4ei7e/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-06-05T15:52:03,826   dependency /tmp/pip-build-env-__t4ei7e/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-06-05T15:52:03,826   dependency /tmp/pip-build-env-__t4ei7e/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-06-05T15:52:03,826   dependency /tmp/pip-build-env-__t4ei7e/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-06-05T15:52:03,826   dependency /tmp/pip-build-env-__t4ei7e/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-06-05T15:52:03,827   dependency /tmp/pip-build-env-__t4ei7e/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-06-05T15:52:03,827   dependency /tmp/pip-build-env-__t4ei7e/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-06-05T15:52:03,827   dependency /tmp/pip-build-env-__t4ei7e/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-06-05T15:52:03,827   dependency /tmp/pip-build-env-__t4ei7e/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-06-05T15:52:03,827   dependency /tmp/pip-build-env-__t4ei7e/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-06-05T15:52:03,829   dependency /tmp/pip-build-env-__t4ei7e/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-06-05T15:52:03,829   dependency /tmp/pip-build-env-__t4ei7e/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-06-05T15:52:03,829   dependency /tmp/pip-build-env-__t4ei7e/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-06-05T15:52:03,829   dependency /tmp/pip-build-env-__t4ei7e/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-06-05T15:52:03,829   dependency /tmp/pip-build-env-__t4ei7e/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-06-05T15:52:03,830   dependency /tmp/pip-build-env-__t4ei7e/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-06-05T15:52:03,831   dependency /tmp/pip-build-env-__t4ei7e/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-06-05T15:52:03,831   dependency /tmp/pip-build-env-__t4ei7e/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-06-05T15:52:03,831   dependency /tmp/pip-build-env-__t4ei7e/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-06-05T15:52:03,831   dependency /tmp/pip-build-env-__t4ei7e/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-06-05T15:52:03,836   dependency /tmp/pip-build-env-__t4ei7e/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-06-05T15:52:03,837   dependency /tmp/pip-build-env-__t4ei7e/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-06-05T15:52:03,837   dependency /tmp/pip-build-env-__t4ei7e/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-06-05T15:52:03,837   dependency /tmp/pip-build-env-__t4ei7e/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-06-05T15:52:03,837   dependency /tmp/pip-build-env-__t4ei7e/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-06-05T15:52:03,850   reading manifest file 'moleculekit.egg-info/SOURCES.txt'
2024-06-05T15:52:03,889   reading manifest template 'MANIFEST.in'
2024-06-05T15:52:04,221   no previously-included directories found matching 'moleculekit/test-data'
2024-06-05T15:52:04,222   no previously-included directories found matching 'moleculekit/tests'
2024-06-05T15:52:04,223   no previously-included directories found matching 'package'
2024-06-05T15:52:04,223   adding license file 'LICENSE'
2024-06-05T15:52:04,242   writing manifest file 'moleculekit.egg-info/SOURCES.txt'
2024-06-05T15:52:05,630   Getting requirements to build wheel: finished with status 'done'
2024-06-05T15:52:05,646   Installing backend dependencies: started
2024-06-05T15:52:05,647   Running command pip subprocess to install backend dependencies
2024-06-05T15:52:06,956   Using pip 24.0 from /usr/local/lib/python3.9/dist-packages/pip (python 3.9)
2024-06-05T15:52:07,538   Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2024-06-05T15:52:07,919   Collecting wheel
2024-06-05T15:52:07,936     Using cached https://www.piwheels.org/simple/wheel/wheel-0.43.0-py3-none-any.whl (65 kB)
2024-06-05T15:52:09,399   Installing collected packages: wheel
2024-06-05T15:52:09,640     Creating /tmp/pip-build-env-__t4ei7e/normal/bin
2024-06-05T15:52:09,642     changing mode of /tmp/pip-build-env-__t4ei7e/normal/bin/wheel to 755
2024-06-05T15:52:09,658   Successfully installed wheel-0.43.0
2024-06-05T15:52:10,046   Installing backend dependencies: finished with status 'done'
2024-06-05T15:52:10,048   Created temporary directory: /tmp/pip-modern-metadata-ob7tjanu
2024-06-05T15:52:10,051   Preparing metadata (pyproject.toml): started
2024-06-05T15:52:10,052   Running command Preparing metadata (pyproject.toml)
2024-06-05T15:52:12,877   running dist_info
2024-06-05T15:52:12,879   creating /tmp/pip-modern-metadata-ob7tjanu/moleculekit.egg-info
2024-06-05T15:52:12,885   writing /tmp/pip-modern-metadata-ob7tjanu/moleculekit.egg-info/PKG-INFO
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2024-06-05T15:52:12,894   writing top-level names to /tmp/pip-modern-metadata-ob7tjanu/moleculekit.egg-info/top_level.txt
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2024-06-05T15:52:12,934   dependency /tmp/pip-build-env-__t4ei7e/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-06-05T15:52:12,934   dependency /tmp/pip-build-env-__t4ei7e/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
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2024-06-05T15:52:12,935   dependency /tmp/pip-build-env-__t4ei7e/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-06-05T15:52:12,935   dependency /tmp/pip-build-env-__t4ei7e/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-06-05T15:52:12,935   dependency /tmp/pip-build-env-__t4ei7e/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-06-05T15:52:12,935   dependency /tmp/pip-build-env-__t4ei7e/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-06-05T15:52:12,935   dependency /tmp/pip-build-env-__t4ei7e/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-06-05T15:52:12,935   dependency /tmp/pip-build-env-__t4ei7e/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-06-05T15:52:12,935   dependency /tmp/pip-build-env-__t4ei7e/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-06-05T15:52:12,935   dependency /tmp/pip-build-env-__t4ei7e/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-06-05T15:52:12,935   dependency /tmp/pip-build-env-__t4ei7e/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-06-05T15:52:12,936   dependency /tmp/pip-build-env-__t4ei7e/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-06-05T15:52:12,936   dependency /tmp/pip-build-env-__t4ei7e/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-06-05T15:52:12,936   dependency /tmp/pip-build-env-__t4ei7e/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-06-05T15:52:12,936   dependency /tmp/pip-build-env-__t4ei7e/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-06-05T15:52:12,936   dependency /tmp/pip-build-env-__t4ei7e/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-06-05T15:52:12,936   dependency /tmp/pip-build-env-__t4ei7e/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-06-05T15:52:12,936   dependency /tmp/pip-build-env-__t4ei7e/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-06-05T15:52:12,937   dependency /tmp/pip-build-env-__t4ei7e/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-06-05T15:52:12,937   dependency /tmp/pip-build-env-__t4ei7e/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-06-05T15:52:12,937   dependency /tmp/pip-build-env-__t4ei7e/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-06-05T15:52:12,937   dependency /tmp/pip-build-env-__t4ei7e/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-06-05T15:52:12,937   dependency /tmp/pip-build-env-__t4ei7e/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-06-05T15:52:12,937   dependency /tmp/pip-build-env-__t4ei7e/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-06-05T15:52:12,937   dependency /tmp/pip-build-env-__t4ei7e/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-06-05T15:52:12,937   dependency /tmp/pip-build-env-__t4ei7e/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-06-05T15:52:12,938   dependency /tmp/pip-build-env-__t4ei7e/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-06-05T15:52:12,938   dependency /tmp/pip-build-env-__t4ei7e/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-06-05T15:52:12,938   dependency /tmp/pip-build-env-__t4ei7e/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-06-05T15:52:12,938   dependency /tmp/pip-build-env-__t4ei7e/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-06-05T15:52:12,939   dependency /tmp/pip-build-env-__t4ei7e/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-06-05T15:52:12,939   dependency /tmp/pip-build-env-__t4ei7e/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
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2024-06-05T15:52:12,940   dependency /tmp/pip-build-env-__t4ei7e/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-06-05T15:52:12,940   dependency /tmp/pip-build-env-__t4ei7e/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-06-05T15:52:12,941   dependency /tmp/pip-build-env-__t4ei7e/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-06-05T15:52:12,941   dependency /tmp/pip-build-env-__t4ei7e/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-06-05T15:52:12,941   dependency /tmp/pip-build-env-__t4ei7e/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-06-05T15:52:12,941   dependency /tmp/pip-build-env-__t4ei7e/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-06-05T15:52:12,942   dependency /tmp/pip-build-env-__t4ei7e/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-06-05T15:52:12,942   dependency /tmp/pip-build-env-__t4ei7e/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-06-05T15:52:12,942   dependency /tmp/pip-build-env-__t4ei7e/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-06-05T15:52:12,942   dependency /tmp/pip-build-env-__t4ei7e/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-06-05T15:52:12,942   dependency /tmp/pip-build-env-__t4ei7e/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-06-05T15:52:12,950   reading manifest file '/tmp/pip-modern-metadata-ob7tjanu/moleculekit.egg-info/SOURCES.txt'
2024-06-05T15:52:12,952   reading manifest template 'MANIFEST.in'
2024-06-05T15:52:13,287   no previously-included directories found matching 'moleculekit/test-data'
2024-06-05T15:52:13,287   no previously-included directories found matching 'moleculekit/tests'
2024-06-05T15:52:13,288   no previously-included directories found matching 'package'
2024-06-05T15:52:13,288   adding license file 'LICENSE'
2024-06-05T15:52:13,302   writing manifest file '/tmp/pip-modern-metadata-ob7tjanu/moleculekit.egg-info/SOURCES.txt'
2024-06-05T15:52:13,311   creating '/tmp/pip-modern-metadata-ob7tjanu/moleculekit-1.8.33.dist-info'
2024-06-05T15:52:13,513   Preparing metadata (pyproject.toml): finished with status 'done'
2024-06-05T15:52:13,520   Source in /tmp/pip-wheel-a3esy6x6/moleculekit_d71a5b14c6c54cb5874871021840a001 has version 1.8.33, which satisfies requirement moleculekit==1.8.33 from https://files.pythonhosted.org/packages/2b/34/e2642fe6f54ec67fdba107eb29968217af52f0b6ef1ac69f533164c6584e/moleculekit-1.8.33.tar.gz
2024-06-05T15:52:13,521   Removed moleculekit==1.8.33 from https://files.pythonhosted.org/packages/2b/34/e2642fe6f54ec67fdba107eb29968217af52f0b6ef1ac69f533164c6584e/moleculekit-1.8.33.tar.gz from build tracker '/tmp/pip-build-tracker-zn9uxige'
2024-06-05T15:52:13,528 Created temporary directory: /tmp/pip-unpack-fqn1fwn8
2024-06-05T15:52:13,528 Created temporary directory: /tmp/pip-unpack-aqi2w3qk
2024-06-05T15:52:13,537 Building wheels for collected packages: moleculekit
2024-06-05T15:52:13,541   Created temporary directory: /tmp/pip-wheel-u6c7q0cl
2024-06-05T15:52:13,541   Destination directory: /tmp/pip-wheel-u6c7q0cl
2024-06-05T15:52:13,543   Building wheel for moleculekit (pyproject.toml): started
2024-06-05T15:52:13,544   Running command Building wheel for moleculekit (pyproject.toml)
2024-06-05T15:52:15,954   running bdist_wheel
2024-06-05T15:52:15,972   running build
2024-06-05T15:52:15,973   running build_py
2024-06-05T15:52:15,980   creating build
2024-06-05T15:52:15,981   creating build/lib.linux-armv7l-cpython-39
2024-06-05T15:52:15,981   creating build/lib.linux-armv7l-cpython-39/moleculekit
2024-06-05T15:52:15,982   copying moleculekit/periodictable.py -> build/lib.linux-armv7l-cpython-39/moleculekit
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2024-06-05T15:52:16,011   copying moleculekit/version.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2024-06-05T15:52:16,013   copying moleculekit/vmdviewer.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2024-06-05T15:52:16,015   copying moleculekit/rcsb.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2024-06-05T15:52:16,017   copying moleculekit/pymolgraphics.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2024-06-05T15:52:16,019   copying moleculekit/molecule.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2024-06-05T15:52:16,023   copying moleculekit/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2024-06-05T15:52:16,025   copying moleculekit/util.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2024-06-05T15:52:16,027   copying moleculekit/align.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2024-06-05T15:52:16,030   creating build/lib.linux-armv7l-cpython-39/moleculekit/fileformats
2024-06-05T15:52:16,031   copying moleculekit/fileformats/netcdf.py -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats
2024-06-05T15:52:16,034   copying moleculekit/fileformats/utils.py -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats
2024-06-05T15:52:16,036   copying moleculekit/fileformats/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats
2024-06-05T15:52:16,039   creating build/lib.linux-armv7l-cpython-39/moleculekit/projections
2024-06-05T15:52:16,039   copying moleculekit/projections/projection.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2024-06-05T15:52:16,041   copying moleculekit/projections/metricsasa.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2024-06-05T15:52:16,044   copying moleculekit/projections/metrictmscore.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2024-06-05T15:52:16,046   copying moleculekit/projections/metricshell.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2024-06-05T15:52:16,048   copying moleculekit/projections/metriccoordinate.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2024-06-05T15:52:16,050   copying moleculekit/projections/metricrmsd.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2024-06-05T15:52:16,052   copying moleculekit/projections/metricplumed2.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2024-06-05T15:52:16,055   copying moleculekit/projections/metricgyration.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2024-06-05T15:52:16,057   copying moleculekit/projections/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2024-06-05T15:52:16,058   copying moleculekit/projections/metricdihedral.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2024-06-05T15:52:16,061   copying moleculekit/projections/util.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2024-06-05T15:52:16,063   copying moleculekit/projections/metricsecondarystructure.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2024-06-05T15:52:16,066   copying moleculekit/projections/metricfluctuation.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2024-06-05T15:52:16,068   copying moleculekit/projections/metricdistance.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2024-06-05T15:52:16,071   copying moleculekit/projections/metricsphericalcoordinate.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2024-06-05T15:52:16,074   creating build/lib.linux-armv7l-cpython-39/moleculekit/tools
2024-06-05T15:52:16,075   copying moleculekit/tools/voxeldescriptors.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2024-06-05T15:52:16,077   copying moleculekit/tools/sequencestructuralalignment.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2024-06-05T15:52:16,079   copying moleculekit/tools/docking.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2024-06-05T15:52:16,082   copying moleculekit/tools/modelling.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2024-06-05T15:52:16,084   copying moleculekit/tools/moleculechecks.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2024-06-05T15:52:16,086   copying moleculekit/tools/autosegment.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2024-06-05T15:52:16,088   copying moleculekit/tools/atomtyper.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2024-06-05T15:52:16,090   copying moleculekit/tools/preparation_customres.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2024-06-05T15:52:16,093   copying moleculekit/tools/graphalignment.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2024-06-05T15:52:16,095   copying moleculekit/tools/detect.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2024-06-05T15:52:16,097   copying moleculekit/tools/preparation.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2024-06-05T15:52:16,100   copying moleculekit/tools/crystalpacking.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2024-06-05T15:52:16,103   copying moleculekit/tools/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2024-06-05T15:52:16,105   copying moleculekit/tools/hhblitsprofile.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2024-06-05T15:52:16,107   creating build/lib.linux-armv7l-cpython-39/moleculekit/atomselect
2024-06-05T15:52:16,108   copying moleculekit/atomselect/analyze.py -> build/lib.linux-armv7l-cpython-39/moleculekit/atomselect
2024-06-05T15:52:16,110   copying moleculekit/atomselect/atomselect.py -> build/lib.linux-armv7l-cpython-39/moleculekit/atomselect
2024-06-05T15:52:16,113   copying moleculekit/atomselect/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/atomselect
2024-06-05T15:52:16,114   copying moleculekit/atomselect/languageparser.py -> build/lib.linux-armv7l-cpython-39/moleculekit/atomselect
2024-06-05T15:52:16,117   creating build/lib.linux-armv7l-cpython-39/moleculekit/ply
2024-06-05T15:52:16,117   copying moleculekit/ply/yacc.py -> build/lib.linux-armv7l-cpython-39/moleculekit/ply
2024-06-05T15:52:16,122   copying moleculekit/ply/lex.py -> build/lib.linux-armv7l-cpython-39/moleculekit/ply
2024-06-05T15:52:16,125   copying moleculekit/ply/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/ply
2024-06-05T15:52:16,127   creating build/lib.linux-armv7l-cpython-39/moleculekit/interactions
2024-06-05T15:52:16,127   copying moleculekit/interactions/interactions.py -> build/lib.linux-armv7l-cpython-39/moleculekit/interactions
2024-06-05T15:52:16,130   copying moleculekit/interactions/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/interactions
2024-06-05T15:52:16,133   creating build/lib.linux-armv7l-cpython-39/moleculekit/smallmol
2024-06-05T15:52:16,134   copying moleculekit/smallmol/smallmolcdp.py -> build/lib.linux-armv7l-cpython-39/moleculekit/smallmol
2024-06-05T15:52:16,136   copying moleculekit/smallmol/test_smallmollib.py -> build/lib.linux-armv7l-cpython-39/moleculekit/smallmol
2024-06-05T15:52:16,138   copying moleculekit/smallmol/test_smallmol.py -> build/lib.linux-armv7l-cpython-39/moleculekit/smallmol
2024-06-05T15:52:16,141   copying moleculekit/smallmol/smallmol.py -> build/lib.linux-armv7l-cpython-39/moleculekit/smallmol
2024-06-05T15:52:16,144   copying moleculekit/smallmol/smallmollib.py -> build/lib.linux-armv7l-cpython-39/moleculekit/smallmol
2024-06-05T15:52:16,147   copying moleculekit/smallmol/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/smallmol
2024-06-05T15:52:16,149   copying moleculekit/smallmol/util.py -> build/lib.linux-armv7l-cpython-39/moleculekit/smallmol
2024-06-05T15:52:16,152   creating build/lib.linux-armv7l-cpython-39/moleculekit/pdbx
2024-06-05T15:52:16,153   copying moleculekit/pdbx/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx
2024-06-05T15:52:16,155   creating build/lib.linux-armv7l-cpython-39/moleculekit/tools/obabel_tools
2024-06-05T15:52:16,156   copying moleculekit/tools/obabel_tools/obabel_cli.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools/obabel_tools
2024-06-05T15:52:16,158   copying moleculekit/tools/obabel_tools/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools/obabel_tools
2024-06-05T15:52:16,161   creating build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/tools
2024-06-05T15:52:16,162   copying moleculekit/smallmol/tools/clustering.py -> build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/tools
2024-06-05T15:52:16,165   copying moleculekit/smallmol/tools/restrainedembed.py -> build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/tools
2024-06-05T15:52:16,167   copying moleculekit/smallmol/tools/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/tools
2024-06-05T15:52:16,169   copying moleculekit/smallmol/tools/test_tools.py -> build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/tools
2024-06-05T15:52:16,172   creating build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/reader
2024-06-05T15:52:16,173   copying moleculekit/pdbx/reader/PdbxParser.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/reader
2024-06-05T15:52:16,176   copying moleculekit/pdbx/reader/PdbxReader.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/reader
2024-06-05T15:52:16,179   copying moleculekit/pdbx/reader/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/reader
2024-06-05T15:52:16,181   copying moleculekit/pdbx/reader/PdbxContainers.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/reader
2024-06-05T15:52:16,185   creating build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/writer
2024-06-05T15:52:16,186   copying moleculekit/pdbx/writer/PdbxWriter.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/writer
2024-06-05T15:52:16,188   copying moleculekit/pdbx/writer/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/writer
2024-06-05T15:52:16,190   creating build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/tests
2024-06-05T15:52:16,191   copying moleculekit/pdbx/tests/PdbxWriterTests.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/tests
2024-06-05T15:52:16,194   copying moleculekit/pdbx/tests/PdbxReaderTests.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/tests
2024-06-05T15:52:16,197   copying moleculekit/pdbx/tests/PdbxReadWriteTests.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/tests
2024-06-05T15:52:16,199   copying moleculekit/pdbx/tests/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/tests
2024-06-05T15:52:16,200   running egg_info
2024-06-05T15:52:16,206   writing moleculekit.egg-info/PKG-INFO
2024-06-05T15:52:16,210   writing dependency_links to moleculekit.egg-info/dependency_links.txt
2024-06-05T15:52:16,211   writing requirements to moleculekit.egg-info/requires.txt
2024-06-05T15:52:16,213   writing top-level names to moleculekit.egg-info/top_level.txt
2024-06-05T15:52:16,234   dependency /tmp/pip-build-env-__t4ei7e/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-06-05T15:52:16,234   dependency /tmp/pip-build-env-__t4ei7e/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-06-05T15:52:16,234   dependency /tmp/pip-build-env-__t4ei7e/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-06-05T15:52:16,234   dependency /tmp/pip-build-env-__t4ei7e/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-06-05T15:52:16,234   dependency /tmp/pip-build-env-__t4ei7e/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-06-05T15:52:16,235   dependency /tmp/pip-build-env-__t4ei7e/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-06-05T15:52:16,235   dependency /tmp/pip-build-env-__t4ei7e/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-06-05T15:52:16,235   dependency /tmp/pip-build-env-__t4ei7e/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-06-05T15:52:16,235   dependency /tmp/pip-build-env-__t4ei7e/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-06-05T15:52:16,235   dependency /tmp/pip-build-env-__t4ei7e/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-06-05T15:52:16,235   dependency /tmp/pip-build-env-__t4ei7e/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-06-05T15:52:16,235   dependency /tmp/pip-build-env-__t4ei7e/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-06-05T15:52:16,235   dependency /tmp/pip-build-env-__t4ei7e/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-06-05T15:52:16,236   dependency /tmp/pip-build-env-__t4ei7e/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-06-05T15:52:16,236   dependency /tmp/pip-build-env-__t4ei7e/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-06-05T15:52:16,236   dependency /tmp/pip-build-env-__t4ei7e/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-06-05T15:52:16,236   dependency /tmp/pip-build-env-__t4ei7e/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-06-05T15:52:16,236   dependency /tmp/pip-build-env-__t4ei7e/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-06-05T15:52:16,236   dependency /tmp/pip-build-env-__t4ei7e/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-06-05T15:52:16,236   dependency /tmp/pip-build-env-__t4ei7e/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-06-05T15:52:16,237   dependency /tmp/pip-build-env-__t4ei7e/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-06-05T15:52:16,237   dependency /tmp/pip-build-env-__t4ei7e/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-06-05T15:52:16,237   dependency /tmp/pip-build-env-__t4ei7e/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-06-05T15:52:16,237   dependency /tmp/pip-build-env-__t4ei7e/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-06-05T15:52:16,237   dependency /tmp/pip-build-env-__t4ei7e/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-06-05T15:52:16,237   dependency /tmp/pip-build-env-__t4ei7e/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-06-05T15:52:16,237   dependency /tmp/pip-build-env-__t4ei7e/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-06-05T15:52:16,238   dependency /tmp/pip-build-env-__t4ei7e/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-06-05T15:52:16,238   dependency /tmp/pip-build-env-__t4ei7e/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-06-05T15:52:16,238   dependency /tmp/pip-build-env-__t4ei7e/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-06-05T15:52:16,238   dependency /tmp/pip-build-env-__t4ei7e/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-06-05T15:52:16,238   dependency /tmp/pip-build-env-__t4ei7e/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-06-05T15:52:16,238   dependency /tmp/pip-build-env-__t4ei7e/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-06-05T15:52:16,238   dependency /tmp/pip-build-env-__t4ei7e/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-06-05T15:52:16,238   dependency /tmp/pip-build-env-__t4ei7e/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-06-05T15:52:16,239   dependency /tmp/pip-build-env-__t4ei7e/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-06-05T15:52:16,239   dependency /tmp/pip-build-env-__t4ei7e/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-06-05T15:52:16,239   dependency /tmp/pip-build-env-__t4ei7e/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-06-05T15:52:16,239   dependency /tmp/pip-build-env-__t4ei7e/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-06-05T15:52:16,239   dependency /tmp/pip-build-env-__t4ei7e/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-06-05T15:52:16,239   dependency /tmp/pip-build-env-__t4ei7e/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-06-05T15:52:16,239   dependency /tmp/pip-build-env-__t4ei7e/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-06-05T15:52:16,239   dependency /tmp/pip-build-env-__t4ei7e/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-06-05T15:52:16,240   dependency /tmp/pip-build-env-__t4ei7e/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-06-05T15:52:16,240   dependency /tmp/pip-build-env-__t4ei7e/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-06-05T15:52:16,240   dependency /tmp/pip-build-env-__t4ei7e/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-06-05T15:52:16,240   dependency /tmp/pip-build-env-__t4ei7e/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-06-05T15:52:16,240   dependency /tmp/pip-build-env-__t4ei7e/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-06-05T15:52:16,240   dependency /tmp/pip-build-env-__t4ei7e/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-06-05T15:52:16,240   dependency /tmp/pip-build-env-__t4ei7e/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-06-05T15:52:16,240   dependency /tmp/pip-build-env-__t4ei7e/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-06-05T15:52:16,240   dependency /tmp/pip-build-env-__t4ei7e/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-06-05T15:52:16,241   dependency /tmp/pip-build-env-__t4ei7e/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-06-05T15:52:16,241   dependency /tmp/pip-build-env-__t4ei7e/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-06-05T15:52:16,241   dependency /tmp/pip-build-env-__t4ei7e/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-06-05T15:52:16,241   dependency /tmp/pip-build-env-__t4ei7e/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-06-05T15:52:16,241   dependency /tmp/pip-build-env-__t4ei7e/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-06-05T15:52:16,241   dependency /tmp/pip-build-env-__t4ei7e/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-06-05T15:52:16,241   dependency /tmp/pip-build-env-__t4ei7e/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-06-05T15:52:16,242   dependency /tmp/pip-build-env-__t4ei7e/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-06-05T15:52:16,243   dependency /tmp/pip-build-env-__t4ei7e/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-06-05T15:52:16,243   dependency /tmp/pip-build-env-__t4ei7e/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-06-05T15:52:16,244   dependency /tmp/pip-build-env-__t4ei7e/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-06-05T15:52:16,244   dependency /tmp/pip-build-env-__t4ei7e/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-06-05T15:52:16,244   dependency /tmp/pip-build-env-__t4ei7e/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-06-05T15:52:16,245   dependency /tmp/pip-build-env-__t4ei7e/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-06-05T15:52:16,245   dependency /tmp/pip-build-env-__t4ei7e/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-06-05T15:52:16,245   dependency /tmp/pip-build-env-__t4ei7e/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-06-05T15:52:16,245   dependency /tmp/pip-build-env-__t4ei7e/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-06-05T15:52:16,245   dependency /tmp/pip-build-env-__t4ei7e/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-06-05T15:52:16,246   dependency /tmp/pip-build-env-__t4ei7e/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-06-05T15:52:16,246   dependency /tmp/pip-build-env-__t4ei7e/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-06-05T15:52:16,246   dependency /tmp/pip-build-env-__t4ei7e/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-06-05T15:52:16,246   dependency /tmp/pip-build-env-__t4ei7e/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-06-05T15:52:16,246   dependency /tmp/pip-build-env-__t4ei7e/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-06-05T15:52:16,253   reading manifest file 'moleculekit.egg-info/SOURCES.txt'
2024-06-05T15:52:16,263   reading manifest template 'MANIFEST.in'
2024-06-05T15:52:16,575   no previously-included directories found matching 'moleculekit/test-data'
2024-06-05T15:52:16,576   no previously-included directories found matching 'moleculekit/tests'
2024-06-05T15:52:16,577   no previously-included directories found matching 'package'
2024-06-05T15:52:16,578   adding license file 'LICENSE'
2024-06-05T15:52:16,596   writing manifest file 'moleculekit.egg-info/SOURCES.txt'
2024-06-05T15:52:16,607   /tmp/pip-build-env-__t4ei7e/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.atomselect_utils' is absent from the `packages` configuration.
2024-06-05T15:52:16,607   !!

2024-06-05T15:52:16,608           ********************************************************************************
2024-06-05T15:52:16,608           ############################
2024-06-05T15:52:16,608           # Package would be ignored #
2024-06-05T15:52:16,608           ############################
2024-06-05T15:52:16,608           Python recognizes 'moleculekit.atomselect_utils' as an importable package[^1],
2024-06-05T15:52:16,608           but it is absent from setuptools' `packages` configuration.

2024-06-05T15:52:16,608           This leads to an ambiguous overall configuration. If you want to distribute this
2024-06-05T15:52:16,609           package, please make sure that 'moleculekit.atomselect_utils' is explicitly added
2024-06-05T15:52:16,609           to the `packages` configuration field.

2024-06-05T15:52:16,609           Alternatively, you can also rely on setuptools' discovery methods
2024-06-05T15:52:16,609           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-06-05T15:52:16,609           instead of `find_packages(...)`/`find:`).

2024-06-05T15:52:16,609           You can read more about "package discovery" on setuptools documentation page:

2024-06-05T15:52:16,610           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-06-05T15:52:16,610           If you don't want 'moleculekit.atomselect_utils' to be distributed and are
2024-06-05T15:52:16,610           already explicitly excluding 'moleculekit.atomselect_utils' via
2024-06-05T15:52:16,610           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-06-05T15:52:16,610           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-06-05T15:52:16,610           combination with a more fine grained `package-data` configuration.

2024-06-05T15:52:16,610           You can read more about "package data files" on setuptools documentation page:

2024-06-05T15:52:16,611           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-06-05T15:52:16,611           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-06-05T15:52:16,611                 even if it does not contain any `.py` files.
2024-06-05T15:52:16,611                 On the other hand, currently there is no concept of package data
2024-06-05T15:52:16,611                 directory, all directories are treated like packages.
2024-06-05T15:52:16,611           ********************************************************************************

2024-06-05T15:52:16,612   !!
2024-06-05T15:52:16,612     check.warn(importable)
2024-06-05T15:52:16,612   /tmp/pip-build-env-__t4ei7e/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.bondguesser_utils' is absent from the `packages` configuration.
2024-06-05T15:52:16,612   !!

2024-06-05T15:52:16,612           ********************************************************************************
2024-06-05T15:52:16,613           ############################
2024-06-05T15:52:16,613           # Package would be ignored #
2024-06-05T15:52:16,613           ############################
2024-06-05T15:52:16,613           Python recognizes 'moleculekit.bondguesser_utils' as an importable package[^1],
2024-06-05T15:52:16,613           but it is absent from setuptools' `packages` configuration.

2024-06-05T15:52:16,613           This leads to an ambiguous overall configuration. If you want to distribute this
2024-06-05T15:52:16,613           package, please make sure that 'moleculekit.bondguesser_utils' is explicitly added
2024-06-05T15:52:16,614           to the `packages` configuration field.

2024-06-05T15:52:16,614           Alternatively, you can also rely on setuptools' discovery methods
2024-06-05T15:52:16,614           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-06-05T15:52:16,614           instead of `find_packages(...)`/`find:`).

2024-06-05T15:52:16,614           You can read more about "package discovery" on setuptools documentation page:

2024-06-05T15:52:16,615           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-06-05T15:52:16,615           If you don't want 'moleculekit.bondguesser_utils' to be distributed and are
2024-06-05T15:52:16,615           already explicitly excluding 'moleculekit.bondguesser_utils' via
2024-06-05T15:52:16,615           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-06-05T15:52:16,615           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-06-05T15:52:16,615           combination with a more fine grained `package-data` configuration.

2024-06-05T15:52:16,616           You can read more about "package data files" on setuptools documentation page:

2024-06-05T15:52:16,616           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-06-05T15:52:16,616           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-06-05T15:52:16,616                 even if it does not contain any `.py` files.
2024-06-05T15:52:16,616                 On the other hand, currently there is no concept of package data
2024-06-05T15:52:16,616                 directory, all directories are treated like packages.
2024-06-05T15:52:16,617           ********************************************************************************

2024-06-05T15:52:16,617   !!
2024-06-05T15:52:16,617     check.warn(importable)
2024-06-05T15:52:16,617   /tmp/pip-build-env-__t4ei7e/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.cython_utils' is absent from the `packages` configuration.
2024-06-05T15:52:16,617   !!

2024-06-05T15:52:16,617           ********************************************************************************
2024-06-05T15:52:16,617           ############################
2024-06-05T15:52:16,618           # Package would be ignored #
2024-06-05T15:52:16,618           ############################
2024-06-05T15:52:16,618           Python recognizes 'moleculekit.cython_utils' as an importable package[^1],
2024-06-05T15:52:16,618           but it is absent from setuptools' `packages` configuration.

2024-06-05T15:52:16,618           This leads to an ambiguous overall configuration. If you want to distribute this
2024-06-05T15:52:16,618           package, please make sure that 'moleculekit.cython_utils' is explicitly added
2024-06-05T15:52:16,618           to the `packages` configuration field.

2024-06-05T15:52:16,619           Alternatively, you can also rely on setuptools' discovery methods
2024-06-05T15:52:16,619           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-06-05T15:52:16,619           instead of `find_packages(...)`/`find:`).

2024-06-05T15:52:16,619           You can read more about "package discovery" on setuptools documentation page:

2024-06-05T15:52:16,619           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-06-05T15:52:16,619           If you don't want 'moleculekit.cython_utils' to be distributed and are
2024-06-05T15:52:16,620           already explicitly excluding 'moleculekit.cython_utils' via
2024-06-05T15:52:16,620           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-06-05T15:52:16,620           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-06-05T15:52:16,620           combination with a more fine grained `package-data` configuration.

2024-06-05T15:52:16,620           You can read more about "package data files" on setuptools documentation page:

2024-06-05T15:52:16,620           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-06-05T15:52:16,621           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-06-05T15:52:16,621                 even if it does not contain any `.py` files.
2024-06-05T15:52:16,621                 On the other hand, currently there is no concept of package data
2024-06-05T15:52:16,621                 directory, all directories are treated like packages.
2024-06-05T15:52:16,621           ********************************************************************************

2024-06-05T15:52:16,621   !!
2024-06-05T15:52:16,621     check.warn(importable)
2024-06-05T15:52:16,621   /tmp/pip-build-env-__t4ei7e/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.distance_utils' is absent from the `packages` configuration.
2024-06-05T15:52:16,621   !!

2024-06-05T15:52:16,622           ********************************************************************************
2024-06-05T15:52:16,622           ############################
2024-06-05T15:52:16,622           # Package would be ignored #
2024-06-05T15:52:16,622           ############################
2024-06-05T15:52:16,622           Python recognizes 'moleculekit.distance_utils' as an importable package[^1],
2024-06-05T15:52:16,622           but it is absent from setuptools' `packages` configuration.

2024-06-05T15:52:16,622           This leads to an ambiguous overall configuration. If you want to distribute this
2024-06-05T15:52:16,623           package, please make sure that 'moleculekit.distance_utils' is explicitly added
2024-06-05T15:52:16,623           to the `packages` configuration field.

2024-06-05T15:52:16,623           Alternatively, you can also rely on setuptools' discovery methods
2024-06-05T15:52:16,623           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-06-05T15:52:16,623           instead of `find_packages(...)`/`find:`).

2024-06-05T15:52:16,623           You can read more about "package discovery" on setuptools documentation page:

2024-06-05T15:52:16,624           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-06-05T15:52:16,624           If you don't want 'moleculekit.distance_utils' to be distributed and are
2024-06-05T15:52:16,624           already explicitly excluding 'moleculekit.distance_utils' via
2024-06-05T15:52:16,624           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-06-05T15:52:16,624           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-06-05T15:52:16,624           combination with a more fine grained `package-data` configuration.

2024-06-05T15:52:16,624           You can read more about "package data files" on setuptools documentation page:

2024-06-05T15:52:16,625           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-06-05T15:52:16,625           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-06-05T15:52:16,625                 even if it does not contain any `.py` files.
2024-06-05T15:52:16,625                 On the other hand, currently there is no concept of package data
2024-06-05T15:52:16,625                 directory, all directories are treated like packages.
2024-06-05T15:52:16,625           ********************************************************************************

2024-06-05T15:52:16,625   !!
2024-06-05T15:52:16,626     check.warn(importable)
2024-06-05T15:52:16,626   /tmp/pip-build-env-__t4ei7e/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.fileformats.binpos' is absent from the `packages` configuration.
2024-06-05T15:52:16,626   !!

2024-06-05T15:52:16,626           ********************************************************************************
2024-06-05T15:52:16,626           ############################
2024-06-05T15:52:16,626           # Package would be ignored #
2024-06-05T15:52:16,626           ############################
2024-06-05T15:52:16,626           Python recognizes 'moleculekit.fileformats.binpos' as an importable package[^1],
2024-06-05T15:52:16,627           but it is absent from setuptools' `packages` configuration.

2024-06-05T15:52:16,627           This leads to an ambiguous overall configuration. If you want to distribute this
2024-06-05T15:52:16,627           package, please make sure that 'moleculekit.fileformats.binpos' is explicitly added
2024-06-05T15:52:16,627           to the `packages` configuration field.

2024-06-05T15:52:16,627           Alternatively, you can also rely on setuptools' discovery methods
2024-06-05T15:52:16,627           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-06-05T15:52:16,627           instead of `find_packages(...)`/`find:`).

2024-06-05T15:52:16,628           You can read more about "package discovery" on setuptools documentation page:

2024-06-05T15:52:16,628           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-06-05T15:52:16,628           If you don't want 'moleculekit.fileformats.binpos' to be distributed and are
2024-06-05T15:52:16,628           already explicitly excluding 'moleculekit.fileformats.binpos' via
2024-06-05T15:52:16,628           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-06-05T15:52:16,628           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-06-05T15:52:16,628           combination with a more fine grained `package-data` configuration.

2024-06-05T15:52:16,629           You can read more about "package data files" on setuptools documentation page:

2024-06-05T15:52:16,629           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-06-05T15:52:16,629           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-06-05T15:52:16,629                 even if it does not contain any `.py` files.
2024-06-05T15:52:16,629                 On the other hand, currently there is no concept of package data
2024-06-05T15:52:16,630                 directory, all directories are treated like packages.
2024-06-05T15:52:16,630           ********************************************************************************

2024-06-05T15:52:16,630   !!
2024-06-05T15:52:16,630     check.warn(importable)
2024-06-05T15:52:16,630   /tmp/pip-build-env-__t4ei7e/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.fileformats.binpos.include' is absent from the `packages` configuration.
2024-06-05T15:52:16,630   !!

2024-06-05T15:52:16,630           ********************************************************************************
2024-06-05T15:52:16,631           ############################
2024-06-05T15:52:16,631           # Package would be ignored #
2024-06-05T15:52:16,631           ############################
2024-06-05T15:52:16,631           Python recognizes 'moleculekit.fileformats.binpos.include' as an importable package[^1],
2024-06-05T15:52:16,631           but it is absent from setuptools' `packages` configuration.

2024-06-05T15:52:16,631           This leads to an ambiguous overall configuration. If you want to distribute this
2024-06-05T15:52:16,631           package, please make sure that 'moleculekit.fileformats.binpos.include' is explicitly added
2024-06-05T15:52:16,631           to the `packages` configuration field.

2024-06-05T15:52:16,632           Alternatively, you can also rely on setuptools' discovery methods
2024-06-05T15:52:16,632           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-06-05T15:52:16,632           instead of `find_packages(...)`/`find:`).

2024-06-05T15:52:16,632           You can read more about "package discovery" on setuptools documentation page:

2024-06-05T15:52:16,632           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-06-05T15:52:16,633           If you don't want 'moleculekit.fileformats.binpos.include' to be distributed and are
2024-06-05T15:52:16,633           already explicitly excluding 'moleculekit.fileformats.binpos.include' via
2024-06-05T15:52:16,633           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-06-05T15:52:16,633           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-06-05T15:52:16,633           combination with a more fine grained `package-data` configuration.

2024-06-05T15:52:16,633           You can read more about "package data files" on setuptools documentation page:

2024-06-05T15:52:16,633           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-06-05T15:52:16,634           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-06-05T15:52:16,634                 even if it does not contain any `.py` files.
2024-06-05T15:52:16,634                 On the other hand, currently there is no concept of package data
2024-06-05T15:52:16,634                 directory, all directories are treated like packages.
2024-06-05T15:52:16,634           ********************************************************************************

2024-06-05T15:52:16,634   !!
2024-06-05T15:52:16,635     check.warn(importable)
2024-06-05T15:52:16,635   /tmp/pip-build-env-__t4ei7e/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.fileformats.binpos.src' is absent from the `packages` configuration.
2024-06-05T15:52:16,635   !!

2024-06-05T15:52:16,635           ********************************************************************************
2024-06-05T15:52:16,635           ############################
2024-06-05T15:52:16,635           # Package would be ignored #
2024-06-05T15:52:16,635           ############################
2024-06-05T15:52:16,635           Python recognizes 'moleculekit.fileformats.binpos.src' as an importable package[^1],
2024-06-05T15:52:16,636           but it is absent from setuptools' `packages` configuration.

2024-06-05T15:52:16,636           This leads to an ambiguous overall configuration. If you want to distribute this
2024-06-05T15:52:16,636           package, please make sure that 'moleculekit.fileformats.binpos.src' is explicitly added
2024-06-05T15:52:16,636           to the `packages` configuration field.

2024-06-05T15:52:16,636           Alternatively, you can also rely on setuptools' discovery methods
2024-06-05T15:52:16,636           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-06-05T15:52:16,636           instead of `find_packages(...)`/`find:`).

2024-06-05T15:52:16,637           You can read more about "package discovery" on setuptools documentation page:

2024-06-05T15:52:16,637           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-06-05T15:52:16,637           If you don't want 'moleculekit.fileformats.binpos.src' to be distributed and are
2024-06-05T15:52:16,637           already explicitly excluding 'moleculekit.fileformats.binpos.src' via
2024-06-05T15:52:16,637           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-06-05T15:52:16,637           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-06-05T15:52:16,638           combination with a more fine grained `package-data` configuration.

2024-06-05T15:52:16,638           You can read more about "package data files" on setuptools documentation page:

2024-06-05T15:52:16,638           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-06-05T15:52:16,638           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-06-05T15:52:16,638                 even if it does not contain any `.py` files.
2024-06-05T15:52:16,639                 On the other hand, currently there is no concept of package data
2024-06-05T15:52:16,639                 directory, all directories are treated like packages.
2024-06-05T15:52:16,639           ********************************************************************************

2024-06-05T15:52:16,639   !!
2024-06-05T15:52:16,639     check.warn(importable)
2024-06-05T15:52:16,639   /tmp/pip-build-env-__t4ei7e/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.fileformats.dcd' is absent from the `packages` configuration.
2024-06-05T15:52:16,639   !!

2024-06-05T15:52:16,640           ********************************************************************************
2024-06-05T15:52:16,640           ############################
2024-06-05T15:52:16,640           # Package would be ignored #
2024-06-05T15:52:16,640           ############################
2024-06-05T15:52:16,640           Python recognizes 'moleculekit.fileformats.dcd' as an importable package[^1],
2024-06-05T15:52:16,640           but it is absent from setuptools' `packages` configuration.

2024-06-05T15:52:16,640           This leads to an ambiguous overall configuration. If you want to distribute this
2024-06-05T15:52:16,640           package, please make sure that 'moleculekit.fileformats.dcd' is explicitly added
2024-06-05T15:52:16,641           to the `packages` configuration field.

2024-06-05T15:52:16,641           Alternatively, you can also rely on setuptools' discovery methods
2024-06-05T15:52:16,641           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-06-05T15:52:16,641           instead of `find_packages(...)`/`find:`).

2024-06-05T15:52:16,641           You can read more about "package discovery" on setuptools documentation page:

2024-06-05T15:52:16,641           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-06-05T15:52:16,642           If you don't want 'moleculekit.fileformats.dcd' to be distributed and are
2024-06-05T15:52:16,642           already explicitly excluding 'moleculekit.fileformats.dcd' via
2024-06-05T15:52:16,642           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-06-05T15:52:16,642           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-06-05T15:52:16,642           combination with a more fine grained `package-data` configuration.

2024-06-05T15:52:16,642           You can read more about "package data files" on setuptools documentation page:

2024-06-05T15:52:16,643           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-06-05T15:52:16,643           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-06-05T15:52:16,643                 even if it does not contain any `.py` files.
2024-06-05T15:52:16,643                 On the other hand, currently there is no concept of package data
2024-06-05T15:52:16,643                 directory, all directories are treated like packages.
2024-06-05T15:52:16,643           ********************************************************************************

2024-06-05T15:52:16,644   !!
2024-06-05T15:52:16,644     check.warn(importable)
2024-06-05T15:52:16,644   /tmp/pip-build-env-__t4ei7e/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.fileformats.dcd.include' is absent from the `packages` configuration.
2024-06-05T15:52:16,644   !!

2024-06-05T15:52:16,644           ********************************************************************************
2024-06-05T15:52:16,644           ############################
2024-06-05T15:52:16,644           # Package would be ignored #
2024-06-05T15:52:16,644           ############################
2024-06-05T15:52:16,645           Python recognizes 'moleculekit.fileformats.dcd.include' as an importable package[^1],
2024-06-05T15:52:16,645           but it is absent from setuptools' `packages` configuration.

2024-06-05T15:52:16,645           This leads to an ambiguous overall configuration. If you want to distribute this
2024-06-05T15:52:16,645           package, please make sure that 'moleculekit.fileformats.dcd.include' is explicitly added
2024-06-05T15:52:16,645           to the `packages` configuration field.

2024-06-05T15:52:16,645           Alternatively, you can also rely on setuptools' discovery methods
2024-06-05T15:52:16,645           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-06-05T15:52:16,646           instead of `find_packages(...)`/`find:`).

2024-06-05T15:52:16,646           You can read more about "package discovery" on setuptools documentation page:

2024-06-05T15:52:16,646           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-06-05T15:52:16,646           If you don't want 'moleculekit.fileformats.dcd.include' to be distributed and are
2024-06-05T15:52:16,646           already explicitly excluding 'moleculekit.fileformats.dcd.include' via
2024-06-05T15:52:16,646           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-06-05T15:52:16,647           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-06-05T15:52:16,647           combination with a more fine grained `package-data` configuration.

2024-06-05T15:52:16,647           You can read more about "package data files" on setuptools documentation page:

2024-06-05T15:52:16,647           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-06-05T15:52:16,648           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-06-05T15:52:16,648                 even if it does not contain any `.py` files.
2024-06-05T15:52:16,648                 On the other hand, currently there is no concept of package data
2024-06-05T15:52:16,648                 directory, all directories are treated like packages.
2024-06-05T15:52:16,648           ********************************************************************************

2024-06-05T15:52:16,648   !!
2024-06-05T15:52:16,648     check.warn(importable)
2024-06-05T15:52:16,649   /tmp/pip-build-env-__t4ei7e/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.fileformats.dcd.src' is absent from the `packages` configuration.
2024-06-05T15:52:16,649   !!

2024-06-05T15:52:16,649           ********************************************************************************
2024-06-05T15:52:16,649           ############################
2024-06-05T15:52:16,649           # Package would be ignored #
2024-06-05T15:52:16,649           ############################
2024-06-05T15:52:16,649           Python recognizes 'moleculekit.fileformats.dcd.src' as an importable package[^1],
2024-06-05T15:52:16,649           but it is absent from setuptools' `packages` configuration.

2024-06-05T15:52:16,650           This leads to an ambiguous overall configuration. If you want to distribute this
2024-06-05T15:52:16,650           package, please make sure that 'moleculekit.fileformats.dcd.src' is explicitly added
2024-06-05T15:52:16,650           to the `packages` configuration field.

2024-06-05T15:52:16,650           Alternatively, you can also rely on setuptools' discovery methods
2024-06-05T15:52:16,650           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-06-05T15:52:16,650           instead of `find_packages(...)`/`find:`).

2024-06-05T15:52:16,650           You can read more about "package discovery" on setuptools documentation page:

2024-06-05T15:52:16,651           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-06-05T15:52:16,651           If you don't want 'moleculekit.fileformats.dcd.src' to be distributed and are
2024-06-05T15:52:16,651           already explicitly excluding 'moleculekit.fileformats.dcd.src' via
2024-06-05T15:52:16,651           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-06-05T15:52:16,651           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-06-05T15:52:16,651           combination with a more fine grained `package-data` configuration.

2024-06-05T15:52:16,652           You can read more about "package data files" on setuptools documentation page:

2024-06-05T15:52:16,652           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-06-05T15:52:16,652           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-06-05T15:52:16,652                 even if it does not contain any `.py` files.
2024-06-05T15:52:16,652                 On the other hand, currently there is no concept of package data
2024-06-05T15:52:16,652                 directory, all directories are treated like packages.
2024-06-05T15:52:16,653           ********************************************************************************

2024-06-05T15:52:16,653   !!
2024-06-05T15:52:16,653     check.warn(importable)
2024-06-05T15:52:16,653   /tmp/pip-build-env-__t4ei7e/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.fileformats.xtc' is absent from the `packages` configuration.
2024-06-05T15:52:16,653   !!

2024-06-05T15:52:16,653           ********************************************************************************
2024-06-05T15:52:16,654           ############################
2024-06-05T15:52:16,654           # Package would be ignored #
2024-06-05T15:52:16,654           ############################
2024-06-05T15:52:16,654           Python recognizes 'moleculekit.fileformats.xtc' as an importable package[^1],
2024-06-05T15:52:16,654           but it is absent from setuptools' `packages` configuration.

2024-06-05T15:52:16,654           This leads to an ambiguous overall configuration. If you want to distribute this
2024-06-05T15:52:16,654           package, please make sure that 'moleculekit.fileformats.xtc' is explicitly added
2024-06-05T15:52:16,654           to the `packages` configuration field.

2024-06-05T15:52:16,655           Alternatively, you can also rely on setuptools' discovery methods
2024-06-05T15:52:16,655           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-06-05T15:52:16,655           instead of `find_packages(...)`/`find:`).

2024-06-05T15:52:16,655           You can read more about "package discovery" on setuptools documentation page:

2024-06-05T15:52:16,655           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-06-05T15:52:16,655           If you don't want 'moleculekit.fileformats.xtc' to be distributed and are
2024-06-05T15:52:16,656           already explicitly excluding 'moleculekit.fileformats.xtc' via
2024-06-05T15:52:16,656           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-06-05T15:52:16,656           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-06-05T15:52:16,656           combination with a more fine grained `package-data` configuration.

2024-06-05T15:52:16,656           You can read more about "package data files" on setuptools documentation page:

2024-06-05T15:52:16,656           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-06-05T15:52:16,657           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-06-05T15:52:16,657                 even if it does not contain any `.py` files.
2024-06-05T15:52:16,657                 On the other hand, currently there is no concept of package data
2024-06-05T15:52:16,657                 directory, all directories are treated like packages.
2024-06-05T15:52:16,657           ********************************************************************************

2024-06-05T15:52:16,657   !!
2024-06-05T15:52:16,657     check.warn(importable)
2024-06-05T15:52:16,658   /tmp/pip-build-env-__t4ei7e/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.fileformats.xtc.include' is absent from the `packages` configuration.
2024-06-05T15:52:16,658   !!

2024-06-05T15:52:16,658           ********************************************************************************
2024-06-05T15:52:16,658           ############################
2024-06-05T15:52:16,658           # Package would be ignored #
2024-06-05T15:52:16,658           ############################
2024-06-05T15:52:16,658           Python recognizes 'moleculekit.fileformats.xtc.include' as an importable package[^1],
2024-06-05T15:52:16,658           but it is absent from setuptools' `packages` configuration.

2024-06-05T15:52:16,659           This leads to an ambiguous overall configuration. If you want to distribute this
2024-06-05T15:52:16,659           package, please make sure that 'moleculekit.fileformats.xtc.include' is explicitly added
2024-06-05T15:52:16,659           to the `packages` configuration field.

2024-06-05T15:52:16,659           Alternatively, you can also rely on setuptools' discovery methods
2024-06-05T15:52:16,659           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-06-05T15:52:16,659           instead of `find_packages(...)`/`find:`).

2024-06-05T15:52:16,660           You can read more about "package discovery" on setuptools documentation page:

2024-06-05T15:52:16,660           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-06-05T15:52:16,660           If you don't want 'moleculekit.fileformats.xtc.include' to be distributed and are
2024-06-05T15:52:16,660           already explicitly excluding 'moleculekit.fileformats.xtc.include' via
2024-06-05T15:52:16,660           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-06-05T15:52:16,660           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-06-05T15:52:16,660           combination with a more fine grained `package-data` configuration.

2024-06-05T15:52:16,661           You can read more about "package data files" on setuptools documentation page:

2024-06-05T15:52:16,661           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-06-05T15:52:16,661           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-06-05T15:52:16,661                 even if it does not contain any `.py` files.
2024-06-05T15:52:16,661                 On the other hand, currently there is no concept of package data
2024-06-05T15:52:16,662                 directory, all directories are treated like packages.
2024-06-05T15:52:16,662           ********************************************************************************

2024-06-05T15:52:16,662   !!
2024-06-05T15:52:16,662     check.warn(importable)
2024-06-05T15:52:16,662   /tmp/pip-build-env-__t4ei7e/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.fileformats.xtc.src' is absent from the `packages` configuration.
2024-06-05T15:52:16,662   !!

2024-06-05T15:52:16,662           ********************************************************************************
2024-06-05T15:52:16,663           ############################
2024-06-05T15:52:16,663           # Package would be ignored #
2024-06-05T15:52:16,663           ############################
2024-06-05T15:52:16,663           Python recognizes 'moleculekit.fileformats.xtc.src' as an importable package[^1],
2024-06-05T15:52:16,663           but it is absent from setuptools' `packages` configuration.

2024-06-05T15:52:16,663           This leads to an ambiguous overall configuration. If you want to distribute this
2024-06-05T15:52:16,663           package, please make sure that 'moleculekit.fileformats.xtc.src' is explicitly added
2024-06-05T15:52:16,663           to the `packages` configuration field.

2024-06-05T15:52:16,664           Alternatively, you can also rely on setuptools' discovery methods
2024-06-05T15:52:16,664           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-06-05T15:52:16,664           instead of `find_packages(...)`/`find:`).

2024-06-05T15:52:16,664           You can read more about "package discovery" on setuptools documentation page:

2024-06-05T15:52:16,665           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-06-05T15:52:16,665           If you don't want 'moleculekit.fileformats.xtc.src' to be distributed and are
2024-06-05T15:52:16,665           already explicitly excluding 'moleculekit.fileformats.xtc.src' via
2024-06-05T15:52:16,665           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-06-05T15:52:16,665           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-06-05T15:52:16,665           combination with a more fine grained `package-data` configuration.

2024-06-05T15:52:16,666           You can read more about "package data files" on setuptools documentation page:

2024-06-05T15:52:16,666           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-06-05T15:52:16,666           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-06-05T15:52:16,666                 even if it does not contain any `.py` files.
2024-06-05T15:52:16,666                 On the other hand, currently there is no concept of package data
2024-06-05T15:52:16,667                 directory, all directories are treated like packages.
2024-06-05T15:52:16,667           ********************************************************************************

2024-06-05T15:52:16,667   !!
2024-06-05T15:52:16,667     check.warn(importable)
2024-06-05T15:52:16,667   /tmp/pip-build-env-__t4ei7e/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.interactions.cationpi' is absent from the `packages` configuration.
2024-06-05T15:52:16,667   !!

2024-06-05T15:52:16,668           ********************************************************************************
2024-06-05T15:52:16,668           ############################
2024-06-05T15:52:16,668           # Package would be ignored #
2024-06-05T15:52:16,668           ############################
2024-06-05T15:52:16,668           Python recognizes 'moleculekit.interactions.cationpi' as an importable package[^1],
2024-06-05T15:52:16,668           but it is absent from setuptools' `packages` configuration.

2024-06-05T15:52:16,668           This leads to an ambiguous overall configuration. If you want to distribute this
2024-06-05T15:52:16,668           package, please make sure that 'moleculekit.interactions.cationpi' is explicitly added
2024-06-05T15:52:16,669           to the `packages` configuration field.

2024-06-05T15:52:16,669           Alternatively, you can also rely on setuptools' discovery methods
2024-06-05T15:52:16,669           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-06-05T15:52:16,669           instead of `find_packages(...)`/`find:`).

2024-06-05T15:52:16,669           You can read more about "package discovery" on setuptools documentation page:

2024-06-05T15:52:16,670           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-06-05T15:52:16,670           If you don't want 'moleculekit.interactions.cationpi' to be distributed and are
2024-06-05T15:52:16,670           already explicitly excluding 'moleculekit.interactions.cationpi' via
2024-06-05T15:52:16,670           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-06-05T15:52:16,670           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-06-05T15:52:16,670           combination with a more fine grained `package-data` configuration.

2024-06-05T15:52:16,671           You can read more about "package data files" on setuptools documentation page:

2024-06-05T15:52:16,671           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-06-05T15:52:16,671           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-06-05T15:52:16,671                 even if it does not contain any `.py` files.
2024-06-05T15:52:16,672                 On the other hand, currently there is no concept of package data
2024-06-05T15:52:16,672                 directory, all directories are treated like packages.
2024-06-05T15:52:16,672           ********************************************************************************

2024-06-05T15:52:16,672   !!
2024-06-05T15:52:16,672     check.warn(importable)
2024-06-05T15:52:16,672   /tmp/pip-build-env-__t4ei7e/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.interactions.hbonds' is absent from the `packages` configuration.
2024-06-05T15:52:16,672   !!

2024-06-05T15:52:16,673           ********************************************************************************
2024-06-05T15:52:16,673           ############################
2024-06-05T15:52:16,673           # Package would be ignored #
2024-06-05T15:52:16,673           ############################
2024-06-05T15:52:16,673           Python recognizes 'moleculekit.interactions.hbonds' as an importable package[^1],
2024-06-05T15:52:16,673           but it is absent from setuptools' `packages` configuration.

2024-06-05T15:52:16,674           This leads to an ambiguous overall configuration. If you want to distribute this
2024-06-05T15:52:16,674           package, please make sure that 'moleculekit.interactions.hbonds' is explicitly added
2024-06-05T15:52:16,674           to the `packages` configuration field.

2024-06-05T15:52:16,674           Alternatively, you can also rely on setuptools' discovery methods
2024-06-05T15:52:16,674           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-06-05T15:52:16,674           instead of `find_packages(...)`/`find:`).

2024-06-05T15:52:16,674           You can read more about "package discovery" on setuptools documentation page:

2024-06-05T15:52:16,675           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-06-05T15:52:16,675           If you don't want 'moleculekit.interactions.hbonds' to be distributed and are
2024-06-05T15:52:16,675           already explicitly excluding 'moleculekit.interactions.hbonds' via
2024-06-05T15:52:16,675           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-06-05T15:52:16,675           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-06-05T15:52:16,675           combination with a more fine grained `package-data` configuration.

2024-06-05T15:52:16,676           You can read more about "package data files" on setuptools documentation page:

2024-06-05T15:52:16,676           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-06-05T15:52:16,676           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-06-05T15:52:16,676                 even if it does not contain any `.py` files.
2024-06-05T15:52:16,677                 On the other hand, currently there is no concept of package data
2024-06-05T15:52:16,677                 directory, all directories are treated like packages.
2024-06-05T15:52:16,677           ********************************************************************************

2024-06-05T15:52:16,677   !!
2024-06-05T15:52:16,677     check.warn(importable)
2024-06-05T15:52:16,677   /tmp/pip-build-env-__t4ei7e/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.interactions.pipi' is absent from the `packages` configuration.
2024-06-05T15:52:16,677   !!

2024-06-05T15:52:16,678           ********************************************************************************
2024-06-05T15:52:16,678           ############################
2024-06-05T15:52:16,678           # Package would be ignored #
2024-06-05T15:52:16,678           ############################
2024-06-05T15:52:16,678           Python recognizes 'moleculekit.interactions.pipi' as an importable package[^1],
2024-06-05T15:52:16,678           but it is absent from setuptools' `packages` configuration.

2024-06-05T15:52:16,679           This leads to an ambiguous overall configuration. If you want to distribute this
2024-06-05T15:52:16,679           package, please make sure that 'moleculekit.interactions.pipi' is explicitly added
2024-06-05T15:52:16,679           to the `packages` configuration field.

2024-06-05T15:52:16,679           Alternatively, you can also rely on setuptools' discovery methods
2024-06-05T15:52:16,679           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-06-05T15:52:16,679           instead of `find_packages(...)`/`find:`).

2024-06-05T15:52:16,679           You can read more about "package discovery" on setuptools documentation page:

2024-06-05T15:52:16,680           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-06-05T15:52:16,680           If you don't want 'moleculekit.interactions.pipi' to be distributed and are
2024-06-05T15:52:16,680           already explicitly excluding 'moleculekit.interactions.pipi' via
2024-06-05T15:52:16,680           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-06-05T15:52:16,680           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-06-05T15:52:16,680           combination with a more fine grained `package-data` configuration.

2024-06-05T15:52:16,681           You can read more about "package data files" on setuptools documentation page:

2024-06-05T15:52:16,681           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-06-05T15:52:16,681           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-06-05T15:52:16,681                 even if it does not contain any `.py` files.
2024-06-05T15:52:16,681                 On the other hand, currently there is no concept of package data
2024-06-05T15:52:16,681                 directory, all directories are treated like packages.
2024-06-05T15:52:16,682           ********************************************************************************

2024-06-05T15:52:16,682   !!
2024-06-05T15:52:16,682     check.warn(importable)
2024-06-05T15:52:16,682   /tmp/pip-build-env-__t4ei7e/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.interactions.sigmahole' is absent from the `packages` configuration.
2024-06-05T15:52:16,682   !!

2024-06-05T15:52:16,682           ********************************************************************************
2024-06-05T15:52:16,682           ############################
2024-06-05T15:52:16,683           # Package would be ignored #
2024-06-05T15:52:16,683           ############################
2024-06-05T15:52:16,683           Python recognizes 'moleculekit.interactions.sigmahole' as an importable package[^1],
2024-06-05T15:52:16,683           but it is absent from setuptools' `packages` configuration.

2024-06-05T15:52:16,683           This leads to an ambiguous overall configuration. If you want to distribute this
2024-06-05T15:52:16,683           package, please make sure that 'moleculekit.interactions.sigmahole' is explicitly added
2024-06-05T15:52:16,684           to the `packages` configuration field.

2024-06-05T15:52:16,684           Alternatively, you can also rely on setuptools' discovery methods
2024-06-05T15:52:16,684           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-06-05T15:52:16,684           instead of `find_packages(...)`/`find:`).

2024-06-05T15:52:16,684           You can read more about "package discovery" on setuptools documentation page:

2024-06-05T15:52:16,685           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-06-05T15:52:16,685           If you don't want 'moleculekit.interactions.sigmahole' to be distributed and are
2024-06-05T15:52:16,685           already explicitly excluding 'moleculekit.interactions.sigmahole' via
2024-06-05T15:52:16,685           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-06-05T15:52:16,686           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-06-05T15:52:16,686           combination with a more fine grained `package-data` configuration.

2024-06-05T15:52:16,686           You can read more about "package data files" on setuptools documentation page:

2024-06-05T15:52:16,686           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-06-05T15:52:16,687           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-06-05T15:52:16,687                 even if it does not contain any `.py` files.
2024-06-05T15:52:16,687                 On the other hand, currently there is no concept of package data
2024-06-05T15:52:16,687                 directory, all directories are treated like packages.
2024-06-05T15:52:16,687           ********************************************************************************

2024-06-05T15:52:16,688   !!
2024-06-05T15:52:16,688     check.warn(importable)
2024-06-05T15:52:16,688   /tmp/pip-build-env-__t4ei7e/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.occupancy_utils' is absent from the `packages` configuration.
2024-06-05T15:52:16,688   !!

2024-06-05T15:52:16,688           ********************************************************************************
2024-06-05T15:52:16,689           ############################
2024-06-05T15:52:16,689           # Package would be ignored #
2024-06-05T15:52:16,689           ############################
2024-06-05T15:52:16,689           Python recognizes 'moleculekit.occupancy_utils' as an importable package[^1],
2024-06-05T15:52:16,689           but it is absent from setuptools' `packages` configuration.

2024-06-05T15:52:16,690           This leads to an ambiguous overall configuration. If you want to distribute this
2024-06-05T15:52:16,690           package, please make sure that 'moleculekit.occupancy_utils' is explicitly added
2024-06-05T15:52:16,690           to the `packages` configuration field.

2024-06-05T15:52:16,690           Alternatively, you can also rely on setuptools' discovery methods
2024-06-05T15:52:16,690           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-06-05T15:52:16,690           instead of `find_packages(...)`/`find:`).

2024-06-05T15:52:16,691           You can read more about "package discovery" on setuptools documentation page:

2024-06-05T15:52:16,691           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-06-05T15:52:16,691           If you don't want 'moleculekit.occupancy_utils' to be distributed and are
2024-06-05T15:52:16,691           already explicitly excluding 'moleculekit.occupancy_utils' via
2024-06-05T15:52:16,691           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-06-05T15:52:16,691           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-06-05T15:52:16,692           combination with a more fine grained `package-data` configuration.

2024-06-05T15:52:16,692           You can read more about "package data files" on setuptools documentation page:

2024-06-05T15:52:16,692           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-06-05T15:52:16,693           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-06-05T15:52:16,693                 even if it does not contain any `.py` files.
2024-06-05T15:52:16,693                 On the other hand, currently there is no concept of package data
2024-06-05T15:52:16,693                 directory, all directories are treated like packages.
2024-06-05T15:52:16,693           ********************************************************************************

2024-06-05T15:52:16,693   !!
2024-06-05T15:52:16,694     check.warn(importable)
2024-06-05T15:52:16,694   /tmp/pip-build-env-__t4ei7e/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.share' is absent from the `packages` configuration.
2024-06-05T15:52:16,694   !!

2024-06-05T15:52:16,694           ********************************************************************************
2024-06-05T15:52:16,694           ############################
2024-06-05T15:52:16,694           # Package would be ignored #
2024-06-05T15:52:16,694           ############################
2024-06-05T15:52:16,695           Python recognizes 'moleculekit.share' as an importable package[^1],
2024-06-05T15:52:16,695           but it is absent from setuptools' `packages` configuration.

2024-06-05T15:52:16,695           This leads to an ambiguous overall configuration. If you want to distribute this
2024-06-05T15:52:16,695           package, please make sure that 'moleculekit.share' is explicitly added
2024-06-05T15:52:16,695           to the `packages` configuration field.

2024-06-05T15:52:16,695           Alternatively, you can also rely on setuptools' discovery methods
2024-06-05T15:52:16,696           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-06-05T15:52:16,696           instead of `find_packages(...)`/`find:`).

2024-06-05T15:52:16,696           You can read more about "package discovery" on setuptools documentation page:

2024-06-05T15:52:16,696           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-06-05T15:52:16,696           If you don't want 'moleculekit.share' to be distributed and are
2024-06-05T15:52:16,696           already explicitly excluding 'moleculekit.share' via
2024-06-05T15:52:16,696           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-06-05T15:52:16,697           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-06-05T15:52:16,697           combination with a more fine grained `package-data` configuration.

2024-06-05T15:52:16,697           You can read more about "package data files" on setuptools documentation page:

2024-06-05T15:52:16,697           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-06-05T15:52:16,698           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-06-05T15:52:16,698                 even if it does not contain any `.py` files.
2024-06-05T15:52:16,698                 On the other hand, currently there is no concept of package data
2024-06-05T15:52:16,698                 directory, all directories are treated like packages.
2024-06-05T15:52:16,698           ********************************************************************************

2024-06-05T15:52:16,698   !!
2024-06-05T15:52:16,698     check.warn(importable)
2024-06-05T15:52:16,699   /tmp/pip-build-env-__t4ei7e/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.share.atomselect' is absent from the `packages` configuration.
2024-06-05T15:52:16,699   !!

2024-06-05T15:52:16,699           ********************************************************************************
2024-06-05T15:52:16,699           ############################
2024-06-05T15:52:16,699           # Package would be ignored #
2024-06-05T15:52:16,699           ############################
2024-06-05T15:52:16,699           Python recognizes 'moleculekit.share.atomselect' as an importable package[^1],
2024-06-05T15:52:16,700           but it is absent from setuptools' `packages` configuration.

2024-06-05T15:52:16,700           This leads to an ambiguous overall configuration. If you want to distribute this
2024-06-05T15:52:16,700           package, please make sure that 'moleculekit.share.atomselect' is explicitly added
2024-06-05T15:52:16,700           to the `packages` configuration field.

2024-06-05T15:52:16,700           Alternatively, you can also rely on setuptools' discovery methods
2024-06-05T15:52:16,700           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-06-05T15:52:16,701           instead of `find_packages(...)`/`find:`).

2024-06-05T15:52:16,701           You can read more about "package discovery" on setuptools documentation page:

2024-06-05T15:52:16,701           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-06-05T15:52:16,701           If you don't want 'moleculekit.share.atomselect' to be distributed and are
2024-06-05T15:52:16,701           already explicitly excluding 'moleculekit.share.atomselect' via
2024-06-05T15:52:16,701           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-06-05T15:52:16,702           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-06-05T15:52:16,702           combination with a more fine grained `package-data` configuration.

2024-06-05T15:52:16,702           You can read more about "package data files" on setuptools documentation page:

2024-06-05T15:52:16,702           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-06-05T15:52:16,702           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-06-05T15:52:16,702                 even if it does not contain any `.py` files.
2024-06-05T15:52:16,703                 On the other hand, currently there is no concept of package data
2024-06-05T15:52:16,703                 directory, all directories are treated like packages.
2024-06-05T15:52:16,703           ********************************************************************************

2024-06-05T15:52:16,703   !!
2024-06-05T15:52:16,703     check.warn(importable)
2024-06-05T15:52:16,703   /tmp/pip-build-env-__t4ei7e/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.share.pdb2pqr.residues' is absent from the `packages` configuration.
2024-06-05T15:52:16,703   !!

2024-06-05T15:52:16,704           ********************************************************************************
2024-06-05T15:52:16,704           ############################
2024-06-05T15:52:16,704           # Package would be ignored #
2024-06-05T15:52:16,704           ############################
2024-06-05T15:52:16,704           Python recognizes 'moleculekit.share.pdb2pqr.residues' as an importable package[^1],
2024-06-05T15:52:16,704           but it is absent from setuptools' `packages` configuration.

2024-06-05T15:52:16,704           This leads to an ambiguous overall configuration. If you want to distribute this
2024-06-05T15:52:16,705           package, please make sure that 'moleculekit.share.pdb2pqr.residues' is explicitly added
2024-06-05T15:52:16,705           to the `packages` configuration field.

2024-06-05T15:52:16,705           Alternatively, you can also rely on setuptools' discovery methods
2024-06-05T15:52:16,705           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-06-05T15:52:16,705           instead of `find_packages(...)`/`find:`).

2024-06-05T15:52:16,705           You can read more about "package discovery" on setuptools documentation page:

2024-06-05T15:52:16,705           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-06-05T15:52:16,706           If you don't want 'moleculekit.share.pdb2pqr.residues' to be distributed and are
2024-06-05T15:52:16,706           already explicitly excluding 'moleculekit.share.pdb2pqr.residues' via
2024-06-05T15:52:16,706           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-06-05T15:52:16,706           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-06-05T15:52:16,706           combination with a more fine grained `package-data` configuration.

2024-06-05T15:52:16,706           You can read more about "package data files" on setuptools documentation page:

2024-06-05T15:52:16,706           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-06-05T15:52:16,707           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-06-05T15:52:16,707                 even if it does not contain any `.py` files.
2024-06-05T15:52:16,707                 On the other hand, currently there is no concept of package data
2024-06-05T15:52:16,707                 directory, all directories are treated like packages.
2024-06-05T15:52:16,707           ********************************************************************************

2024-06-05T15:52:16,707   !!
2024-06-05T15:52:16,708     check.warn(importable)
2024-06-05T15:52:16,708   /tmp/pip-build-env-__t4ei7e/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.tmalign' is absent from the `packages` configuration.
2024-06-05T15:52:16,708   !!

2024-06-05T15:52:16,708           ********************************************************************************
2024-06-05T15:52:16,708           ############################
2024-06-05T15:52:16,708           # Package would be ignored #
2024-06-05T15:52:16,708           ############################
2024-06-05T15:52:16,708           Python recognizes 'moleculekit.tmalign' as an importable package[^1],
2024-06-05T15:52:16,708           but it is absent from setuptools' `packages` configuration.

2024-06-05T15:52:16,709           This leads to an ambiguous overall configuration. If you want to distribute this
2024-06-05T15:52:16,709           package, please make sure that 'moleculekit.tmalign' is explicitly added
2024-06-05T15:52:16,709           to the `packages` configuration field.

2024-06-05T15:52:16,709           Alternatively, you can also rely on setuptools' discovery methods
2024-06-05T15:52:16,709           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-06-05T15:52:16,709           instead of `find_packages(...)`/`find:`).

2024-06-05T15:52:16,709           You can read more about "package discovery" on setuptools documentation page:

2024-06-05T15:52:16,710           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-06-05T15:52:16,710           If you don't want 'moleculekit.tmalign' to be distributed and are
2024-06-05T15:52:16,710           already explicitly excluding 'moleculekit.tmalign' via
2024-06-05T15:52:16,710           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-06-05T15:52:16,710           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-06-05T15:52:16,710           combination with a more fine grained `package-data` configuration.

2024-06-05T15:52:16,710           You can read more about "package data files" on setuptools documentation page:

2024-06-05T15:52:16,711           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-06-05T15:52:16,711           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-06-05T15:52:16,711                 even if it does not contain any `.py` files.
2024-06-05T15:52:16,711                 On the other hand, currently there is no concept of package data
2024-06-05T15:52:16,711                 directory, all directories are treated like packages.
2024-06-05T15:52:16,711           ********************************************************************************

2024-06-05T15:52:16,712   !!
2024-06-05T15:52:16,712     check.warn(importable)
2024-06-05T15:52:16,712   /tmp/pip-build-env-__t4ei7e/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.tmalign.include' is absent from the `packages` configuration.
2024-06-05T15:52:16,712   !!

2024-06-05T15:52:16,712           ********************************************************************************
2024-06-05T15:52:16,712           ############################
2024-06-05T15:52:16,712           # Package would be ignored #
2024-06-05T15:52:16,712           ############################
2024-06-05T15:52:16,713           Python recognizes 'moleculekit.tmalign.include' as an importable package[^1],
2024-06-05T15:52:16,713           but it is absent from setuptools' `packages` configuration.

2024-06-05T15:52:16,713           This leads to an ambiguous overall configuration. If you want to distribute this
2024-06-05T15:52:16,713           package, please make sure that 'moleculekit.tmalign.include' is explicitly added
2024-06-05T15:52:16,713           to the `packages` configuration field.

2024-06-05T15:52:16,713           Alternatively, you can also rely on setuptools' discovery methods
2024-06-05T15:52:16,713           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-06-05T15:52:16,713           instead of `find_packages(...)`/`find:`).

2024-06-05T15:52:16,714           You can read more about "package discovery" on setuptools documentation page:

2024-06-05T15:52:16,714           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-06-05T15:52:16,714           If you don't want 'moleculekit.tmalign.include' to be distributed and are
2024-06-05T15:52:16,714           already explicitly excluding 'moleculekit.tmalign.include' via
2024-06-05T15:52:16,714           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-06-05T15:52:16,714           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-06-05T15:52:16,715           combination with a more fine grained `package-data` configuration.

2024-06-05T15:52:16,715           You can read more about "package data files" on setuptools documentation page:

2024-06-05T15:52:16,715           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-06-05T15:52:16,715           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-06-05T15:52:16,715                 even if it does not contain any `.py` files.
2024-06-05T15:52:16,716                 On the other hand, currently there is no concept of package data
2024-06-05T15:52:16,716                 directory, all directories are treated like packages.
2024-06-05T15:52:16,716           ********************************************************************************

2024-06-05T15:52:16,716   !!
2024-06-05T15:52:16,716     check.warn(importable)
2024-06-05T15:52:16,716   /tmp/pip-build-env-__t4ei7e/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.tmalign.src' is absent from the `packages` configuration.
2024-06-05T15:52:16,716   !!

2024-06-05T15:52:16,717           ********************************************************************************
2024-06-05T15:52:16,717           ############################
2024-06-05T15:52:16,717           # Package would be ignored #
2024-06-05T15:52:16,717           ############################
2024-06-05T15:52:16,717           Python recognizes 'moleculekit.tmalign.src' as an importable package[^1],
2024-06-05T15:52:16,717           but it is absent from setuptools' `packages` configuration.

2024-06-05T15:52:16,717           This leads to an ambiguous overall configuration. If you want to distribute this
2024-06-05T15:52:16,717           package, please make sure that 'moleculekit.tmalign.src' is explicitly added
2024-06-05T15:52:16,717           to the `packages` configuration field.

2024-06-05T15:52:16,718           Alternatively, you can also rely on setuptools' discovery methods
2024-06-05T15:52:16,718           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-06-05T15:52:16,718           instead of `find_packages(...)`/`find:`).

2024-06-05T15:52:16,718           You can read more about "package discovery" on setuptools documentation page:

2024-06-05T15:52:16,718           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-06-05T15:52:16,718           If you don't want 'moleculekit.tmalign.src' to be distributed and are
2024-06-05T15:52:16,719           already explicitly excluding 'moleculekit.tmalign.src' via
2024-06-05T15:52:16,719           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-06-05T15:52:16,719           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-06-05T15:52:16,719           combination with a more fine grained `package-data` configuration.

2024-06-05T15:52:16,719           You can read more about "package data files" on setuptools documentation page:

2024-06-05T15:52:16,719           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-06-05T15:52:16,720           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-06-05T15:52:16,720                 even if it does not contain any `.py` files.
2024-06-05T15:52:16,720                 On the other hand, currently there is no concept of package data
2024-06-05T15:52:16,720                 directory, all directories are treated like packages.
2024-06-05T15:52:16,720           ********************************************************************************

2024-06-05T15:52:16,720   !!
2024-06-05T15:52:16,720     check.warn(importable)
2024-06-05T15:52:16,720   /tmp/pip-build-env-__t4ei7e/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.wrapping' is absent from the `packages` configuration.
2024-06-05T15:52:16,721   !!

2024-06-05T15:52:16,721           ********************************************************************************
2024-06-05T15:52:16,721           ############################
2024-06-05T15:52:16,721           # Package would be ignored #
2024-06-05T15:52:16,721           ############################
2024-06-05T15:52:16,721           Python recognizes 'moleculekit.wrapping' as an importable package[^1],
2024-06-05T15:52:16,721           but it is absent from setuptools' `packages` configuration.

2024-06-05T15:52:16,722           This leads to an ambiguous overall configuration. If you want to distribute this
2024-06-05T15:52:16,722           package, please make sure that 'moleculekit.wrapping' is explicitly added
2024-06-05T15:52:16,722           to the `packages` configuration field.

2024-06-05T15:52:16,722           Alternatively, you can also rely on setuptools' discovery methods
2024-06-05T15:52:16,722           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-06-05T15:52:16,722           instead of `find_packages(...)`/`find:`).

2024-06-05T15:52:16,722           You can read more about "package discovery" on setuptools documentation page:

2024-06-05T15:52:16,723           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-06-05T15:52:16,723           If you don't want 'moleculekit.wrapping' to be distributed and are
2024-06-05T15:52:16,723           already explicitly excluding 'moleculekit.wrapping' via
2024-06-05T15:52:16,723           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-06-05T15:52:16,723           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-06-05T15:52:16,723           combination with a more fine grained `package-data` configuration.

2024-06-05T15:52:16,723           You can read more about "package data files" on setuptools documentation page:

2024-06-05T15:52:16,724           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-06-05T15:52:16,724           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-06-05T15:52:16,724                 even if it does not contain any `.py` files.
2024-06-05T15:52:16,724                 On the other hand, currently there is no concept of package data
2024-06-05T15:52:16,724                 directory, all directories are treated like packages.
2024-06-05T15:52:16,724           ********************************************************************************

2024-06-05T15:52:16,725   !!
2024-06-05T15:52:16,725     check.warn(importable)
2024-06-05T15:52:16,725   copying moleculekit/logging.ini -> build/lib.linux-armv7l-cpython-39/moleculekit
2024-06-05T15:52:16,725   copying moleculekit/vmd_wrapper -> build/lib.linux-armv7l-cpython-39/moleculekit
2024-06-05T15:52:16,725   creating build/lib.linux-armv7l-cpython-39/moleculekit/atomselect_utils
2024-06-05T15:52:16,725   copying moleculekit/atomselect_utils/atomselect_utils.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/atomselect_utils
2024-06-05T15:52:16,752   copying moleculekit/atomselect_utils/atomselect_utils.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/atomselect_utils
2024-06-05T15:52:16,755   creating build/lib.linux-armv7l-cpython-39/moleculekit/bondguesser_utils
2024-06-05T15:52:16,756   copying moleculekit/bondguesser_utils/bondguesser_utils.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/bondguesser_utils
2024-06-05T15:52:16,788   copying moleculekit/bondguesser_utils/bondguesser_utils.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/bondguesser_utils
2024-06-05T15:52:16,790   creating build/lib.linux-armv7l-cpython-39/moleculekit/cython_utils
2024-06-05T15:52:16,791   copying moleculekit/cython_utils/cython_utils.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/cython_utils
2024-06-05T15:52:16,820   copying moleculekit/cython_utils/cython_utils.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/cython_utils
2024-06-05T15:52:16,822   creating build/lib.linux-armv7l-cpython-39/moleculekit/distance_utils
2024-06-05T15:52:16,823   copying moleculekit/distance_utils/distance_utils.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/distance_utils
2024-06-05T15:52:16,857   copying moleculekit/distance_utils/distance_utils.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/distance_utils
2024-06-05T15:52:16,860   creating build/lib.linux-armv7l-cpython-39/moleculekit/occupancy_utils
2024-06-05T15:52:16,861   copying moleculekit/occupancy_utils/occupancy_utils.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/occupancy_utils
2024-06-05T15:52:16,928   copying moleculekit/occupancy_utils/occupancy_utils.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/occupancy_utils
2024-06-05T15:52:16,930   creating build/lib.linux-armv7l-cpython-39/moleculekit/share
2024-06-05T15:52:16,930   copying moleculekit/share/ALA.cif -> build/lib.linux-armv7l-cpython-39/moleculekit/share
2024-06-05T15:52:16,934   copying moleculekit/share/backbone.cif -> build/lib.linux-armv7l-cpython-39/moleculekit/share
2024-06-05T15:52:16,937   copying moleculekit/share/opm_sequences.json -> build/lib.linux-armv7l-cpython-39/moleculekit/share
2024-06-05T15:52:17,202   creating build/lib.linux-armv7l-cpython-39/moleculekit/share/atomselect
2024-06-05T15:52:17,203   copying moleculekit/share/atomselect/atomselect.json -> build/lib.linux-armv7l-cpython-39/moleculekit/share/atomselect
2024-06-05T15:52:17,205   creating build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr
2024-06-05T15:52:17,206   creating build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-06-05T15:52:17,207   copying moleculekit/share/pdb2pqr/residues/.gitkeep -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-06-05T15:52:17,208   copying moleculekit/share/pdb2pqr/residues/004.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-06-05T15:52:17,210   copying moleculekit/share/pdb2pqr/residues/004.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-06-05T15:52:17,212   copying moleculekit/share/pdb2pqr/residues/03Y.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-06-05T15:52:17,214   copying moleculekit/share/pdb2pqr/residues/03Y.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-06-05T15:52:17,216   copying moleculekit/share/pdb2pqr/residues/0A1.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-06-05T15:52:17,218   copying moleculekit/share/pdb2pqr/residues/0A1.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-06-05T15:52:17,220   copying moleculekit/share/pdb2pqr/residues/0AF.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-06-05T15:52:17,222   copying moleculekit/share/pdb2pqr/residues/0AF.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-06-05T15:52:17,224   copying moleculekit/share/pdb2pqr/residues/0BN.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-06-05T15:52:17,226   copying moleculekit/share/pdb2pqr/residues/0BN.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-06-05T15:52:17,228   copying moleculekit/share/pdb2pqr/residues/1MH.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-06-05T15:52:17,230   copying moleculekit/share/pdb2pqr/residues/1MH.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-06-05T15:52:17,232   copying moleculekit/share/pdb2pqr/residues/2AS.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-06-05T15:52:17,233   copying moleculekit/share/pdb2pqr/residues/2AS.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-06-05T15:52:17,235   copying moleculekit/share/pdb2pqr/residues/2GX.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-06-05T15:52:17,237   copying moleculekit/share/pdb2pqr/residues/2GX.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-06-05T15:52:17,239   copying moleculekit/share/pdb2pqr/residues/2ML.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-06-05T15:52:17,241   copying moleculekit/share/pdb2pqr/residues/2ML.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-06-05T15:52:17,243   copying moleculekit/share/pdb2pqr/residues/2MR.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-06-05T15:52:17,245   copying moleculekit/share/pdb2pqr/residues/2MR.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-06-05T15:52:17,248   copying moleculekit/share/pdb2pqr/residues/4IN.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-06-05T15:52:17,250   copying moleculekit/share/pdb2pqr/residues/4IN.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-06-05T15:52:17,252   copying moleculekit/share/pdb2pqr/residues/4PH.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-06-05T15:52:17,253   copying moleculekit/share/pdb2pqr/residues/4PH.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-06-05T15:52:17,255   copying moleculekit/share/pdb2pqr/residues/4PQ.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-06-05T15:52:17,257   copying moleculekit/share/pdb2pqr/residues/4PQ.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-06-05T15:52:17,259   copying moleculekit/share/pdb2pqr/residues/5JP.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-06-05T15:52:17,261   copying moleculekit/share/pdb2pqr/residues/5JP.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-06-05T15:52:17,263   copying moleculekit/share/pdb2pqr/residues/AA4.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-06-05T15:52:17,265   copying moleculekit/share/pdb2pqr/residues/AA4.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-06-05T15:52:17,267   copying moleculekit/share/pdb2pqr/residues/ABA.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-06-05T15:52:17,269   copying moleculekit/share/pdb2pqr/residues/ABA.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-06-05T15:52:17,271   copying moleculekit/share/pdb2pqr/residues/AHP.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-06-05T15:52:17,274   copying moleculekit/share/pdb2pqr/residues/AHP.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-06-05T15:52:17,275   copying moleculekit/share/pdb2pqr/residues/ALC.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-06-05T15:52:17,278   copying moleculekit/share/pdb2pqr/residues/ALC.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-06-05T15:52:17,280   copying moleculekit/share/pdb2pqr/residues/ALN.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-06-05T15:52:17,281   copying moleculekit/share/pdb2pqr/residues/ALN.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-06-05T15:52:17,283   copying moleculekit/share/pdb2pqr/residues/ALY.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-06-05T15:52:17,285   copying moleculekit/share/pdb2pqr/residues/ALY.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-06-05T15:52:17,287   copying moleculekit/share/pdb2pqr/residues/APD.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-06-05T15:52:17,289   copying moleculekit/share/pdb2pqr/residues/APD.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-06-05T15:52:17,291   copying moleculekit/share/pdb2pqr/residues/BB8.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-06-05T15:52:17,293   copying moleculekit/share/pdb2pqr/residues/BB8.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-06-05T15:52:17,295   copying moleculekit/share/pdb2pqr/residues/BCS.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-06-05T15:52:17,297   copying moleculekit/share/pdb2pqr/residues/BCS.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-06-05T15:52:17,299   copying moleculekit/share/pdb2pqr/residues/BTK.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-06-05T15:52:17,301   copying moleculekit/share/pdb2pqr/residues/BTK.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-06-05T15:52:17,304   copying moleculekit/share/pdb2pqr/residues/CCS.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-06-05T15:52:17,306   copying moleculekit/share/pdb2pqr/residues/CCS.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-06-05T15:52:17,308   copying moleculekit/share/pdb2pqr/residues/CGU.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-06-05T15:52:17,309   copying moleculekit/share/pdb2pqr/residues/CGU.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-06-05T15:52:17,311   copying moleculekit/share/pdb2pqr/residues/CSA.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-06-05T15:52:17,313   copying moleculekit/share/pdb2pqr/residues/CSA.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-06-05T15:52:17,315   copying moleculekit/share/pdb2pqr/residues/CSO.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-06-05T15:52:17,317   copying moleculekit/share/pdb2pqr/residues/CSO.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-06-05T15:52:17,320   copying moleculekit/share/pdb2pqr/residues/CSP.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-06-05T15:52:17,321   copying moleculekit/share/pdb2pqr/residues/CSP.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-06-05T15:52:17,324   copying moleculekit/share/pdb2pqr/residues/CSS.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-06-05T15:52:17,325   copying moleculekit/share/pdb2pqr/residues/CSS.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-06-05T15:52:17,327   copying moleculekit/share/pdb2pqr/residues/D4P.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-06-05T15:52:17,329   copying moleculekit/share/pdb2pqr/residues/D4P.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-06-05T15:52:17,331   copying moleculekit/share/pdb2pqr/residues/DA2.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-06-05T15:52:17,333   copying moleculekit/share/pdb2pqr/residues/DA2.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-06-05T15:52:17,335   copying moleculekit/share/pdb2pqr/residues/DAB.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-06-05T15:52:17,337   copying moleculekit/share/pdb2pqr/residues/DAB.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-06-05T15:52:17,339   copying moleculekit/share/pdb2pqr/residues/DAH.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-06-05T15:52:17,341   copying moleculekit/share/pdb2pqr/residues/DAH.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-06-05T15:52:17,343   copying moleculekit/share/pdb2pqr/residues/DPP.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-06-05T15:52:17,345   copying moleculekit/share/pdb2pqr/residues/DPP.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-06-05T15:52:17,347   copying moleculekit/share/pdb2pqr/residues/ESC.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-06-05T15:52:17,349   copying moleculekit/share/pdb2pqr/residues/ESC.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-06-05T15:52:17,351   copying moleculekit/share/pdb2pqr/residues/FGL.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-06-05T15:52:17,352   copying moleculekit/share/pdb2pqr/residues/FGL.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-06-05T15:52:17,354   copying moleculekit/share/pdb2pqr/residues/GHG.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-06-05T15:52:17,356   copying moleculekit/share/pdb2pqr/residues/GHG.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-06-05T15:52:17,358   copying moleculekit/share/pdb2pqr/residues/GME.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-06-05T15:52:17,360   copying moleculekit/share/pdb2pqr/residues/GME.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-06-05T15:52:17,362   copying moleculekit/share/pdb2pqr/residues/GNC.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-06-05T15:52:17,364   copying moleculekit/share/pdb2pqr/residues/GNC.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-06-05T15:52:17,366   copying moleculekit/share/pdb2pqr/residues/HHK.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-06-05T15:52:17,368   copying moleculekit/share/pdb2pqr/residues/HHK.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-06-05T15:52:17,370   copying moleculekit/share/pdb2pqr/residues/HLU.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-06-05T15:52:17,372   copying moleculekit/share/pdb2pqr/residues/HLU.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-06-05T15:52:17,374   copying moleculekit/share/pdb2pqr/residues/HLX.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-06-05T15:52:17,376   copying moleculekit/share/pdb2pqr/residues/HLX.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-06-05T15:52:17,378   copying moleculekit/share/pdb2pqr/residues/HOX.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-06-05T15:52:17,380   copying moleculekit/share/pdb2pqr/residues/HOX.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-06-05T15:52:17,382   copying moleculekit/share/pdb2pqr/residues/HPE.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-06-05T15:52:17,383   copying moleculekit/share/pdb2pqr/residues/HPE.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-06-05T15:52:17,386   copying moleculekit/share/pdb2pqr/residues/HQA.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-06-05T15:52:17,388   copying moleculekit/share/pdb2pqr/residues/HQA.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-06-05T15:52:17,390   copying moleculekit/share/pdb2pqr/residues/HTR.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-06-05T15:52:17,392   copying moleculekit/share/pdb2pqr/residues/HTR.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-06-05T15:52:17,394   copying moleculekit/share/pdb2pqr/residues/HYP.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-06-05T15:52:17,396   copying moleculekit/share/pdb2pqr/residues/HYP.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-06-05T15:52:17,398   copying moleculekit/share/pdb2pqr/residues/I2M.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-06-05T15:52:17,400   copying moleculekit/share/pdb2pqr/residues/I2M.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-06-05T15:52:17,402   copying moleculekit/share/pdb2pqr/residues/IGL.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-06-05T15:52:17,404   copying moleculekit/share/pdb2pqr/residues/IGL.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-06-05T15:52:17,406   copying moleculekit/share/pdb2pqr/residues/IIL.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-06-05T15:52:17,408   copying moleculekit/share/pdb2pqr/residues/IIL.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-06-05T15:52:17,410   copying moleculekit/share/pdb2pqr/residues/IML.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-06-05T15:52:17,412   copying moleculekit/share/pdb2pqr/residues/IML.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-06-05T15:52:17,414   copying moleculekit/share/pdb2pqr/residues/KYN.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-06-05T15:52:17,416   copying moleculekit/share/pdb2pqr/residues/KYN.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-06-05T15:52:17,418   copying moleculekit/share/pdb2pqr/residues/LME.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-06-05T15:52:17,419   copying moleculekit/share/pdb2pqr/residues/LME.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-06-05T15:52:17,422   copying moleculekit/share/pdb2pqr/residues/LMQ.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-06-05T15:52:17,423   copying moleculekit/share/pdb2pqr/residues/LMQ.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-06-05T15:52:17,425   copying moleculekit/share/pdb2pqr/residues/LYZ.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-06-05T15:52:17,427   copying moleculekit/share/pdb2pqr/residues/LYZ.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-06-05T15:52:17,429   copying moleculekit/share/pdb2pqr/residues/M3L.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-06-05T15:52:17,431   copying moleculekit/share/pdb2pqr/residues/M3L.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-06-05T15:52:17,434   copying moleculekit/share/pdb2pqr/residues/ME0.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-06-05T15:52:17,435   copying moleculekit/share/pdb2pqr/residues/ME0.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-06-05T15:52:17,437   copying moleculekit/share/pdb2pqr/residues/MEA.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-06-05T15:52:17,439   copying moleculekit/share/pdb2pqr/residues/MEA.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-06-05T15:52:17,441   copying moleculekit/share/pdb2pqr/residues/MEN.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-06-05T15:52:17,443   copying moleculekit/share/pdb2pqr/residues/MEN.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-06-05T15:52:17,445   copying moleculekit/share/pdb2pqr/residues/MEQ.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-06-05T15:52:17,447   copying moleculekit/share/pdb2pqr/residues/MEQ.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-06-05T15:52:17,449   copying moleculekit/share/pdb2pqr/residues/MLE.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-06-05T15:52:17,451   copying moleculekit/share/pdb2pqr/residues/MLE.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-06-05T15:52:17,453   copying moleculekit/share/pdb2pqr/residues/MLY.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-06-05T15:52:17,455   copying moleculekit/share/pdb2pqr/residues/MLY.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-06-05T15:52:17,457   copying moleculekit/share/pdb2pqr/residues/MLZ.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-06-05T15:52:17,459   copying moleculekit/share/pdb2pqr/residues/MLZ.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-06-05T15:52:17,461   copying moleculekit/share/pdb2pqr/residues/MME.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-06-05T15:52:17,462   copying moleculekit/share/pdb2pqr/residues/MME.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-06-05T15:52:17,464   copying moleculekit/share/pdb2pqr/residues/MMO.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-06-05T15:52:17,466   copying moleculekit/share/pdb2pqr/residues/MMO.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-06-05T15:52:17,468   copying moleculekit/share/pdb2pqr/residues/MVA.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-06-05T15:52:17,470   copying moleculekit/share/pdb2pqr/residues/MVA.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-06-05T15:52:17,472   copying moleculekit/share/pdb2pqr/residues/NAL.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-06-05T15:52:17,474   copying moleculekit/share/pdb2pqr/residues/NAL.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-06-05T15:52:17,476   copying moleculekit/share/pdb2pqr/residues/NCY.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-06-05T15:52:17,478   copying moleculekit/share/pdb2pqr/residues/NCY.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-06-05T15:52:17,480   copying moleculekit/share/pdb2pqr/residues/NLE.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-06-05T15:52:17,482   copying moleculekit/share/pdb2pqr/residues/NLE.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-06-05T15:52:17,484   copying moleculekit/share/pdb2pqr/residues/NVA.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-06-05T15:52:17,486   copying moleculekit/share/pdb2pqr/residues/NVA.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-06-05T15:52:17,488   copying moleculekit/share/pdb2pqr/residues/NZC.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-06-05T15:52:17,490   copying moleculekit/share/pdb2pqr/residues/NZC.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-06-05T15:52:17,491   copying moleculekit/share/pdb2pqr/residues/OCY.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-06-05T15:52:17,493   copying moleculekit/share/pdb2pqr/residues/OCY.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-06-05T15:52:17,495   copying moleculekit/share/pdb2pqr/residues/OMX.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-06-05T15:52:17,497   copying moleculekit/share/pdb2pqr/residues/OMX.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-06-05T15:52:17,499   copying moleculekit/share/pdb2pqr/residues/ONL.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-06-05T15:52:17,501   copying moleculekit/share/pdb2pqr/residues/ONL.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-06-05T15:52:17,503   copying moleculekit/share/pdb2pqr/residues/ORM.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-06-05T15:52:17,505   copying moleculekit/share/pdb2pqr/residues/ORM.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-06-05T15:52:17,507   copying moleculekit/share/pdb2pqr/residues/P1L.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-06-05T15:52:17,509   copying moleculekit/share/pdb2pqr/residues/P1L.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-06-05T15:52:17,511   copying moleculekit/share/pdb2pqr/residues/PCA.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-06-05T15:52:17,513   copying moleculekit/share/pdb2pqr/residues/PCA.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-06-05T15:52:17,516   copying moleculekit/share/pdb2pqr/residues/PRK.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-06-05T15:52:17,517   copying moleculekit/share/pdb2pqr/residues/PRK.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-06-05T15:52:17,520   copying moleculekit/share/pdb2pqr/residues/PTR.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-06-05T15:52:17,522   copying moleculekit/share/pdb2pqr/residues/PTR.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-06-05T15:52:17,524   copying moleculekit/share/pdb2pqr/residues/SEP.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-06-05T15:52:17,526   copying moleculekit/share/pdb2pqr/residues/SEP.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-06-05T15:52:17,527   copying moleculekit/share/pdb2pqr/residues/TPO.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-06-05T15:52:17,529   copying moleculekit/share/pdb2pqr/residues/TPO.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-06-05T15:52:17,531   copying moleculekit/share/pdb2pqr/residues/TRO.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-06-05T15:52:17,533   copying moleculekit/share/pdb2pqr/residues/TRO.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-06-05T15:52:17,535   copying moleculekit/share/pdb2pqr/residues/TY2.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-06-05T15:52:17,537   copying moleculekit/share/pdb2pqr/residues/TY2.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-06-05T15:52:17,539   copying moleculekit/share/pdb2pqr/residues/TYQ.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-06-05T15:52:17,541   copying moleculekit/share/pdb2pqr/residues/TYQ.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-06-05T15:52:17,543   copying moleculekit/share/pdb2pqr/residues/YCM.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-06-05T15:52:17,545   copying moleculekit/share/pdb2pqr/residues/YCM.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-06-05T15:52:17,547   copying moleculekit/share/pdb2pqr/residues/YNM.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-06-05T15:52:17,549   copying moleculekit/share/pdb2pqr/residues/YNM.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-06-05T15:52:17,551   creating build/lib.linux-armv7l-cpython-39/moleculekit/tmalign
2024-06-05T15:52:17,552   copying moleculekit/tmalign/tmalign_util.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/tmalign
2024-06-05T15:52:17,580   copying moleculekit/tmalign/tmalign_util.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/tmalign
2024-06-05T15:52:17,583   copying moleculekit/tmalign/tmalignlib.pxd -> build/lib.linux-armv7l-cpython-39/moleculekit/tmalign
2024-06-05T15:52:17,585   creating build/lib.linux-armv7l-cpython-39/moleculekit/tmalign/include
2024-06-05T15:52:17,586   copying moleculekit/tmalign/include/TMAlign.h -> build/lib.linux-armv7l-cpython-39/moleculekit/tmalign/include
2024-06-05T15:52:17,589   creating build/lib.linux-armv7l-cpython-39/moleculekit/tmalign/src
2024-06-05T15:52:17,590   copying moleculekit/tmalign/src/TMAlign.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/tmalign/src
2024-06-05T15:52:17,597   creating build/lib.linux-armv7l-cpython-39/moleculekit/wrapping
2024-06-05T15:52:17,599   copying moleculekit/wrapping/wrapping.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/wrapping
2024-06-05T15:52:17,628   copying moleculekit/wrapping/wrapping.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/wrapping
2024-06-05T15:52:17,630   creating build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/binpos
2024-06-05T15:52:17,631   copying moleculekit/fileformats/binpos/binpos.c -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/binpos
2024-06-05T15:52:17,650   copying moleculekit/fileformats/binpos/binpos.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/binpos
2024-06-05T15:52:17,652   copying moleculekit/fileformats/binpos/binposlib.pxd -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/binpos
2024-06-05T15:52:17,654   creating build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/binpos/include
2024-06-05T15:52:17,655   copying moleculekit/fileformats/binpos/include/binposplugin.h -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/binpos/include
2024-06-05T15:52:17,657   copying moleculekit/fileformats/binpos/include/largefiles.h -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/binpos/include
2024-06-05T15:52:17,659   copying moleculekit/fileformats/binpos/include/molfile_plugin.h -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/binpos/include
2024-06-05T15:52:17,662   creating build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/binpos/src
2024-06-05T15:52:17,663   copying moleculekit/fileformats/binpos/src/binposplugin.c -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/binpos/src
2024-06-05T15:52:17,666   creating build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/dcd
2024-06-05T15:52:17,666   copying moleculekit/fileformats/dcd/dcd.c -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/dcd
2024-06-05T15:52:17,688   copying moleculekit/fileformats/dcd/dcd.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/dcd
2024-06-05T15:52:17,690   copying moleculekit/fileformats/dcd/dcdlib.pxd -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/dcd
2024-06-05T15:52:17,692   creating build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/dcd/include
2024-06-05T15:52:17,693   copying moleculekit/fileformats/dcd/include/dcdplugin.h -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/dcd/include
2024-06-05T15:52:17,695   copying moleculekit/fileformats/dcd/include/endianswap.h -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/dcd/include
2024-06-05T15:52:17,697   copying moleculekit/fileformats/dcd/include/fastio.h -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/dcd/include
2024-06-05T15:52:17,700   copying moleculekit/fileformats/dcd/include/largefiles.h -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/dcd/include
2024-06-05T15:52:17,701   copying moleculekit/fileformats/dcd/include/molfile_plugin.h -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/dcd/include
2024-06-05T15:52:17,705   creating build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/dcd/src
2024-06-05T15:52:17,705   copying moleculekit/fileformats/dcd/src/dcdplugin.c -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/dcd/src
2024-06-05T15:52:17,709   creating build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc
2024-06-05T15:52:17,710   copying moleculekit/fileformats/xtc/trr.c -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc
2024-06-05T15:52:17,735   copying moleculekit/fileformats/xtc/trr.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc
2024-06-05T15:52:17,738   copying moleculekit/fileformats/xtc/trrlib.pxd -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc
2024-06-05T15:52:17,741   copying moleculekit/fileformats/xtc/xdrlib.pxd -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc
2024-06-05T15:52:17,743   copying moleculekit/fileformats/xtc/xtc.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc
2024-06-05T15:52:17,773   copying moleculekit/fileformats/xtc/xtc.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc
2024-06-05T15:52:17,776   copying moleculekit/fileformats/xtc/xtclib.pxd -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc
2024-06-05T15:52:17,778   creating build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/include
2024-06-05T15:52:17,779   copying moleculekit/fileformats/xtc/include/trr_header.h -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/include
2024-06-05T15:52:17,781   copying moleculekit/fileformats/xtc/include/xdr_seek.h -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/include
2024-06-05T15:52:17,783   copying moleculekit/fileformats/xtc/include/xdrfile.h -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/include
2024-06-05T15:52:17,787   copying moleculekit/fileformats/xtc/include/xdrfile_trr.h -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/include
2024-06-05T15:52:17,789   copying moleculekit/fileformats/xtc/include/xdrfile_xtc.h -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/include
2024-06-05T15:52:17,791   copying moleculekit/fileformats/xtc/include/xtc.h -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/include
2024-06-05T15:52:17,794   creating build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/src
2024-06-05T15:52:17,795   copying moleculekit/fileformats/xtc/src/xdr_seek.c -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/src
2024-06-05T15:52:17,798   copying moleculekit/fileformats/xtc/src/xdrfile.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/src
2024-06-05T15:52:17,802   copying moleculekit/fileformats/xtc/src/xdrfile_trr.c -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/src
2024-06-05T15:52:17,805   copying moleculekit/fileformats/xtc/src/xdrfile_xtc.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/src
2024-06-05T15:52:17,807   copying moleculekit/fileformats/xtc/src/xtc.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/src
2024-06-05T15:52:17,810   creating build/lib.linux-armv7l-cpython-39/moleculekit/interactions/cationpi
2024-06-05T15:52:17,811   copying moleculekit/interactions/cationpi/cationpi.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/interactions/cationpi
2024-06-05T15:52:17,839   copying moleculekit/interactions/cationpi/cationpi.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/interactions/cationpi
2024-06-05T15:52:17,842   creating build/lib.linux-armv7l-cpython-39/moleculekit/interactions/hbonds
2024-06-05T15:52:17,843   copying moleculekit/interactions/hbonds/hbonds.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/interactions/hbonds
2024-06-05T15:52:17,870   copying moleculekit/interactions/hbonds/hbonds.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/interactions/hbonds
2024-06-05T15:52:17,874   creating build/lib.linux-armv7l-cpython-39/moleculekit/interactions/pipi
2024-06-05T15:52:17,875   copying moleculekit/interactions/pipi/pipi.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/interactions/pipi
2024-06-05T15:52:17,905   copying moleculekit/interactions/pipi/pipi.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/interactions/pipi
2024-06-05T15:52:17,908   creating build/lib.linux-armv7l-cpython-39/moleculekit/interactions/sigmahole
2024-06-05T15:52:17,909   copying moleculekit/interactions/sigmahole/sigmahole.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/interactions/sigmahole
2024-06-05T15:52:17,937   copying moleculekit/interactions/sigmahole/sigmahole.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/interactions/sigmahole
2024-06-05T15:52:17,951   UPDATING build/lib.linux-armv7l-cpython-39/moleculekit/_version.py
2024-06-05T15:52:17,951   set build/lib.linux-armv7l-cpython-39/moleculekit/_version.py to '1.8.33'
2024-06-05T15:52:17,951   running build_ext
2024-06-05T15:52:17,966   building 'moleculekit.interactions.hbonds' extension
2024-06-05T15:52:17,966   creating build/temp.linux-armv7l-cpython-39
2024-06-05T15:52:17,967   creating build/temp.linux-armv7l-cpython-39/moleculekit
2024-06-05T15:52:17,968   creating build/temp.linux-armv7l-cpython-39/moleculekit/interactions
2024-06-05T15:52:17,969   creating build/temp.linux-armv7l-cpython-39/moleculekit/interactions/hbonds
2024-06-05T15:52:17,970   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-__t4ei7e/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/interactions/hbonds/hbonds.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/interactions/hbonds/hbonds.o -O3
2024-06-05T15:52:18,238   In file included from /tmp/pip-build-env-__t4ei7e/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2024-06-05T15:52:18,238                    from /tmp/pip-build-env-__t4ei7e/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2024-06-05T15:52:18,238                    from /tmp/pip-build-env-__t4ei7e/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5,
2024-06-05T15:52:18,238                    from moleculekit/interactions/hbonds/hbonds.cpp:1265:
2024-06-05T15:52:18,238   /tmp/pip-build-env-__t4ei7e/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2024-06-05T15:52:18,239      17 | #warning "Using deprecated NumPy API, disable it with " \
2024-06-05T15:52:18,239         |  ^~~~~~~
2024-06-05T15:52:41,354   moleculekit/interactions/hbonds/hbonds.cpp: In function ‘PyObject* __pyx_pw_11moleculekit_12interactions_6hbonds_1calculate(PyObject*, PyObject* const*, Py_ssize_t, PyObject*)’:
2024-06-05T15:52:41,354   moleculekit/interactions/hbonds/hbonds.cpp:21019:52: warning: ‘__pyx_v_d_idx_h’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2024-06-05T15:52:41,355   21019 |             (__pyx_v_results[__pyx_v_f]).push_back(__pyx_v_d_idx_h);
2024-06-05T15:52:41,355         |                                                    ^~~~~~~~~~~~~~~
2024-06-05T15:52:41,355   moleculekit/interactions/hbonds/hbonds.cpp:20032:57: note: ‘__pyx_v_d_idx_h’ was declared here
2024-06-05T15:52:41,355   20032 |   __pyx_t_11moleculekit_12interactions_6hbonds_UINT32_t __pyx_v_d_idx_h;
2024-06-05T15:52:41,355         |                                                         ^~~~~~~~~~~~~~~
2024-06-05T15:52:44,681   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/interactions/hbonds/hbonds.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/interactions/hbonds.cpython-39-arm-linux-gnueabihf.so
2024-06-05T15:52:45,008   building 'moleculekit.interactions.pipi' extension
2024-06-05T15:52:45,008   creating build/temp.linux-armv7l-cpython-39/moleculekit/interactions/pipi
2024-06-05T15:52:45,009   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-__t4ei7e/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/interactions/pipi/pipi.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/interactions/pipi/pipi.o -O3
2024-06-05T15:52:45,242   In file included from /tmp/pip-build-env-__t4ei7e/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2024-06-05T15:52:45,242                    from /tmp/pip-build-env-__t4ei7e/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2024-06-05T15:52:45,242                    from /tmp/pip-build-env-__t4ei7e/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5,
2024-06-05T15:52:45,242                    from moleculekit/interactions/pipi/pipi.cpp:1265:
2024-06-05T15:52:45,242   /tmp/pip-build-env-__t4ei7e/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2024-06-05T15:52:45,242      17 | #warning "Using deprecated NumPy API, disable it with " \
2024-06-05T15:52:45,243         |  ^~~~~~~
2024-06-05T15:53:13,991   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/interactions/pipi/pipi.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/interactions/pipi.cpython-39-arm-linux-gnueabihf.so
2024-06-05T15:53:14,322   building 'moleculekit.interactions.cationpi' extension
2024-06-05T15:53:14,322   creating build/temp.linux-armv7l-cpython-39/moleculekit/interactions/cationpi
2024-06-05T15:53:14,323   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-__t4ei7e/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/interactions/cationpi/cationpi.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/interactions/cationpi/cationpi.o -O3
2024-06-05T15:53:14,626   In file included from /tmp/pip-build-env-__t4ei7e/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2024-06-05T15:53:14,626                    from /tmp/pip-build-env-__t4ei7e/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2024-06-05T15:53:14,626                    from /tmp/pip-build-env-__t4ei7e/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5,
2024-06-05T15:53:14,627                    from moleculekit/interactions/cationpi/cationpi.cpp:1265:
2024-06-05T15:53:14,627   /tmp/pip-build-env-__t4ei7e/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2024-06-05T15:53:14,627      17 | #warning "Using deprecated NumPy API, disable it with " \
2024-06-05T15:53:14,627         |  ^~~~~~~
2024-06-05T15:53:42,869   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/interactions/cationpi/cationpi.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/interactions/cationpi.cpython-39-arm-linux-gnueabihf.so
2024-06-05T15:53:43,198   building 'moleculekit.interactions.sigmahole' extension
2024-06-05T15:53:43,199   creating build/temp.linux-armv7l-cpython-39/moleculekit/interactions/sigmahole
2024-06-05T15:53:43,199   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-__t4ei7e/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/interactions/sigmahole/sigmahole.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/interactions/sigmahole/sigmahole.o -O3
2024-06-05T15:53:43,489   In file included from /tmp/pip-build-env-__t4ei7e/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2024-06-05T15:53:43,489                    from /tmp/pip-build-env-__t4ei7e/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2024-06-05T15:53:43,489                    from /tmp/pip-build-env-__t4ei7e/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5,
2024-06-05T15:53:43,489                    from moleculekit/interactions/sigmahole/sigmahole.cpp:1265:
2024-06-05T15:53:43,489   /tmp/pip-build-env-__t4ei7e/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2024-06-05T15:53:43,490      17 | #warning "Using deprecated NumPy API, disable it with " \
2024-06-05T15:53:43,490         |  ^~~~~~~
2024-06-05T15:54:10,998   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/interactions/sigmahole/sigmahole.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/interactions/sigmahole.cpython-39-arm-linux-gnueabihf.so
2024-06-05T15:54:11,338   building 'moleculekit.wrapping' extension
2024-06-05T15:54:11,338   creating build/temp.linux-armv7l-cpython-39/moleculekit/wrapping
2024-06-05T15:54:11,339   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-__t4ei7e/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/wrapping/wrapping.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/wrapping/wrapping.o -O3
2024-06-05T15:54:11,595   In file included from /tmp/pip-build-env-__t4ei7e/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2024-06-05T15:54:11,595                    from /tmp/pip-build-env-__t4ei7e/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2024-06-05T15:54:11,595                    from /tmp/pip-build-env-__t4ei7e/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5,
2024-06-05T15:54:11,595                    from moleculekit/wrapping/wrapping.cpp:1265:
2024-06-05T15:54:11,595   /tmp/pip-build-env-__t4ei7e/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2024-06-05T15:54:11,595      17 | #warning "Using deprecated NumPy API, disable it with " \
2024-06-05T15:54:11,595         |  ^~~~~~~
2024-06-05T15:54:37,595   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/wrapping/wrapping.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/wrapping.cpython-39-arm-linux-gnueabihf.so
2024-06-05T15:54:37,818   building 'moleculekit.bondguesser_utils' extension
2024-06-05T15:54:37,818   creating build/temp.linux-armv7l-cpython-39/moleculekit/bondguesser_utils
2024-06-05T15:54:37,819   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-__t4ei7e/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/bondguesser_utils/bondguesser_utils.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/bondguesser_utils/bondguesser_utils.o -O3
2024-06-05T15:54:38,052   In file included from /tmp/pip-build-env-__t4ei7e/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2024-06-05T15:54:38,052                    from /tmp/pip-build-env-__t4ei7e/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2024-06-05T15:54:38,052                    from /tmp/pip-build-env-__t4ei7e/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5,
2024-06-05T15:54:38,052                    from moleculekit/bondguesser_utils/bondguesser_utils.cpp:1265:
2024-06-05T15:54:38,052   /tmp/pip-build-env-__t4ei7e/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2024-06-05T15:54:38,053      17 | #warning "Using deprecated NumPy API, disable it with " \
2024-06-05T15:54:38,053         |  ^~~~~~~
2024-06-05T15:54:39,589   moleculekit/bondguesser_utils/bondguesser_utils.cpp: In function ‘PyObject* __pyx_pf_11moleculekit_17bondguesser_utils_make_grid_neighborlist_nonperiodic(PyObject*, __Pyx_memviewslice, __pyx_t_11moleculekit_17bondguesser_utils_UINT32_t, __pyx_t_11moleculekit_17bondguesser_utils_UINT32_t, __pyx_t_11moleculekit_17bondguesser_utils_UINT32_t)’:
2024-06-05T15:54:39,590   moleculekit/bondguesser_utils/bondguesser_utils.cpp:19801:33: warning: comparison of integer expressions of different signedness: ‘int’ and ‘__pyx_t_11moleculekit_17bondguesser_utils_UINT32_t’ {aka ‘long unsigned int’} [-Wsign-compare]
2024-06-05T15:54:39,590   19801 |   for (__pyx_t_3 = 0; __pyx_t_3 < __pyx_t_2; __pyx_t_3+=1) {
2024-06-05T15:54:39,590         |                       ~~~~~~~~~~^~~~~~~~~~~
2024-06-05T15:54:39,590   moleculekit/bondguesser_utils/bondguesser_utils.cpp:19813:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘__pyx_t_11moleculekit_17bondguesser_utils_UINT32_t’ {aka ‘long unsigned int’} [-Wsign-compare]
2024-06-05T15:54:39,590   19813 |     for (__pyx_t_6 = 0; __pyx_t_6 < __pyx_t_5; __pyx_t_6+=1) {
2024-06-05T15:54:39,590         |                         ~~~~~~~~~~^~~~~~~~~~~
2024-06-05T15:54:39,590   moleculekit/bondguesser_utils/bondguesser_utils.cpp:19825:37: warning: comparison of integer expressions of different signedness: ‘int’ and ‘__pyx_t_11moleculekit_17bondguesser_utils_UINT32_t’ {aka ‘long unsigned int’} [-Wsign-compare]
2024-06-05T15:54:39,591   19825 |       for (__pyx_t_9 = 0; __pyx_t_9 < __pyx_t_8; __pyx_t_9+=1) {
2024-06-05T15:54:39,591         |                           ~~~~~~~~~~^~~~~~~~~~~
2024-06-05T15:54:39,591   moleculekit/bondguesser_utils/bondguesser_utils.cpp:19864:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-06-05T15:54:39,591   19864 |         __pyx_t_12 = (__pyx_v_xi < (__pyx_v_xboxes - 1));
2024-06-05T15:54:39,591         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-06-05T15:54:39,591   moleculekit/bondguesser_utils/bondguesser_utils.cpp:19903:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-06-05T15:54:39,592   19903 |         __pyx_t_12 = (__pyx_v_yi < (__pyx_v_yboxes - 1));
2024-06-05T15:54:39,592         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-06-05T15:54:39,592   moleculekit/bondguesser_utils/bondguesser_utils.cpp:19942:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-06-05T15:54:39,592   19942 |         __pyx_t_12 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2024-06-05T15:54:39,592         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-06-05T15:54:39,592   moleculekit/bondguesser_utils/bondguesser_utils.cpp:19981:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-06-05T15:54:39,592   19981 |         __pyx_t_13 = (__pyx_v_xi < (__pyx_v_xboxes - 1));
2024-06-05T15:54:39,593         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-06-05T15:54:39,593   moleculekit/bondguesser_utils/bondguesser_utils.cpp:19987:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-06-05T15:54:39,593   19987 |         __pyx_t_13 = (__pyx_v_yi < (__pyx_v_yboxes - 1));
2024-06-05T15:54:39,593         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-06-05T15:54:39,593   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20028:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-06-05T15:54:39,593   20028 |         __pyx_t_13 = (__pyx_v_xi < (__pyx_v_xboxes - 1));
2024-06-05T15:54:39,594         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-06-05T15:54:39,594   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20034:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-06-05T15:54:39,594   20034 |         __pyx_t_13 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2024-06-05T15:54:39,594         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-06-05T15:54:39,594   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20075:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-06-05T15:54:39,594   20075 |         __pyx_t_13 = (__pyx_v_yi < (__pyx_v_yboxes - 1));
2024-06-05T15:54:39,594         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-06-05T15:54:39,595   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20081:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-06-05T15:54:39,595   20081 |         __pyx_t_13 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2024-06-05T15:54:39,595         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-06-05T15:54:39,595   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20122:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-06-05T15:54:39,595   20122 |         __pyx_t_13 = (__pyx_v_xi < (__pyx_v_xboxes - 1));
2024-06-05T15:54:39,595         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-06-05T15:54:39,595   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20175:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-06-05T15:54:39,596   20175 |         __pyx_t_13 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2024-06-05T15:54:39,596         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-06-05T15:54:39,596   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20222:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-06-05T15:54:39,596   20222 |         __pyx_t_13 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2024-06-05T15:54:39,596         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-06-05T15:54:39,596   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20263:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-06-05T15:54:39,596   20263 |         __pyx_t_13 = (__pyx_v_xi < (__pyx_v_xboxes - 1));
2024-06-05T15:54:39,597         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-06-05T15:54:39,597   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20269:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-06-05T15:54:39,597   20269 |         __pyx_t_13 = (__pyx_v_yi < (__pyx_v_yboxes - 1));
2024-06-05T15:54:39,597         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-06-05T15:54:39,597   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20275:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-06-05T15:54:39,597   20275 |         __pyx_t_13 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2024-06-05T15:54:39,597         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-06-05T15:54:39,598   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20322:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-06-05T15:54:39,598   20322 |         __pyx_t_13 = (__pyx_v_yi < (__pyx_v_yboxes - 1));
2024-06-05T15:54:39,598         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-06-05T15:54:39,598   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20328:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-06-05T15:54:39,598   20328 |         __pyx_t_13 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2024-06-05T15:54:39,598         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-06-05T15:54:39,598   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20369:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-06-05T15:54:39,599   20369 |         __pyx_t_13 = (__pyx_v_xi < (__pyx_v_xboxes - 1));
2024-06-05T15:54:39,599         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-06-05T15:54:39,599   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20381:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-06-05T15:54:39,599   20381 |         __pyx_t_13 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2024-06-05T15:54:39,599         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-06-05T15:54:39,599   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20434:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-06-05T15:54:39,599   20434 |         __pyx_t_13 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2024-06-05T15:54:39,600         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-06-05T15:54:39,618   moleculekit/bondguesser_utils/bondguesser_utils.cpp: In function ‘PyObject* __pyx_pf_11moleculekit_17bondguesser_utils_2grid_bonds(PyObject*, __Pyx_memviewslice, __Pyx_memviewslice, __Pyx_memviewslice, float, int, __Pyx_memviewslice, __Pyx_memviewslice)’:
2024-06-05T15:54:39,619   moleculekit/bondguesser_utils/bondguesser_utils.cpp:21056:37: warning: comparison of integer expressions of different signedness: ‘__pyx_t_11moleculekit_17bondguesser_utils_UINT32_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
2024-06-05T15:54:39,619   21056 |       __pyx_t_6 = (__pyx_v_boxneigh == __pyx_v_n_boxes);
2024-06-05T15:54:39,619         |                    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
2024-06-05T15:54:39,619   moleculekit/bondguesser_utils/bondguesser_utils.cpp:21093:37: warning: comparison of integer expressions of different signedness: ‘__pyx_t_11moleculekit_17bondguesser_utils_UINT32_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
2024-06-05T15:54:39,619   21093 |       __pyx_t_6 = (__pyx_v_boxneigh == __pyx_v_boxidx);
2024-06-05T15:54:39,619         |                    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
2024-06-05T15:55:02,816   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/bondguesser_utils/bondguesser_utils.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/bondguesser_utils.cpython-39-arm-linux-gnueabihf.so
2024-06-05T15:55:03,125   building 'moleculekit.atomselect_utils' extension
2024-06-05T15:55:03,126   creating build/temp.linux-armv7l-cpython-39/moleculekit/atomselect_utils
2024-06-05T15:55:03,127   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-__t4ei7e/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/atomselect_utils/atomselect_utils.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/atomselect_utils/atomselect_utils.o -O3
2024-06-05T15:55:03,367   In file included from /tmp/pip-build-env-__t4ei7e/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2024-06-05T15:55:03,367                    from /tmp/pip-build-env-__t4ei7e/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2024-06-05T15:55:03,367                    from /tmp/pip-build-env-__t4ei7e/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5,
2024-06-05T15:55:03,367                    from moleculekit/atomselect_utils/atomselect_utils.cpp:1282:
2024-06-05T15:55:03,367   /tmp/pip-build-env-__t4ei7e/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2024-06-05T15:55:03,367      17 | #warning "Using deprecated NumPy API, disable it with " \
2024-06-05T15:55:03,367         |  ^~~~~~~
2024-06-05T15:55:05,087   moleculekit/atomselect_utils/atomselect_utils.cpp: In function ‘bool __pyx_f_11moleculekit_16atomselect_utils__find_connected_subfragment(int, int, const char*, const char*, const char*, __Pyx_memviewslice, __Pyx_memviewslice, __Pyx_memviewslice, std::vector<std::__cxx11::basic_string<char> >&, __Pyx_memviewslice, std::vector<std::vector<int> >&, std::vector<std::vector<int> >&, std::vector<std::vector<int> >&)’:
2024-06-05T15:55:05,087   moleculekit/atomselect_utils/atomselect_utils.cpp:23255:161: warning: comparison of integer expressions of different signedness: ‘__pyx_t_11moleculekit_16atomselect_utils_UINT32_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
2024-06-05T15:55:05,087   23255 |       __pyx_t_3 = ((*((__pyx_t_11moleculekit_16atomselect_utils_UINT32_t *) ( /* dim=0 */ (__pyx_v_uq_resid.data + __pyx_t_2 * __pyx_v_uq_resid.strides[0]) ))) != __pyx_v_resnum);
2024-06-05T15:55:05,087         |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
2024-06-05T15:55:05,093   moleculekit/atomselect_utils/atomselect_utils.cpp: In function ‘bool __pyx_f_11moleculekit_16atomselect_utils__find_subfragments(int, std::vector<std::vector<int> >&, std::vector<std::vector<int> >&, __Pyx_memviewslice, __Pyx_memviewslice, __Pyx_memviewslice, std::vector<std::__cxx11::basic_string<char> >&, __Pyx_memviewslice, std::vector<std::vector<int> >&)’:
2024-06-05T15:55:05,093   moleculekit/atomselect_utils/atomselect_utils.cpp:23507:163: warning: comparison of integer expressions of different signedness: ‘__pyx_t_11moleculekit_16atomselect_utils_UINT32_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
2024-06-05T15:55:05,093   23507 |         __pyx_t_6 = ((*((__pyx_t_11moleculekit_16atomselect_utils_UINT32_t *) ( /* dim=0 */ (__pyx_v_uq_resid.data + __pyx_t_5 * __pyx_v_uq_resid.strides[0]) ))) != __pyx_v_i);
2024-06-05T15:55:05,093         |                      ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2024-06-05T15:55:05,099   moleculekit/atomselect_utils/atomselect_utils.cpp: In function ‘bool __pyx_f_11moleculekit_16atomselect_utils__find_subfragments_topologically(int, std::vector<std::vector<int> >&, std::vector<std::vector<int> >&, __Pyx_memviewslice, __Pyx_memviewslice, __Pyx_memviewslice, std::vector<std::__cxx11::basic_string<char> >&, __Pyx_memviewslice, std::vector<std::vector<int> >&)’:
2024-06-05T15:55:05,099   moleculekit/atomselect_utils/atomselect_utils.cpp:23774:163: warning: comparison of integer expressions of different signedness: ‘__pyx_t_11moleculekit_16atomselect_utils_UINT32_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
2024-06-05T15:55:05,099   23774 |         __pyx_t_6 = ((*((__pyx_t_11moleculekit_16atomselect_utils_UINT32_t *) ( /* dim=0 */ (__pyx_v_uq_resid.data + __pyx_t_5 * __pyx_v_uq_resid.strides[0]) ))) != __pyx_v_i);
2024-06-05T15:55:05,100         |                      ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2024-06-05T15:55:35,668   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/atomselect_utils/atomselect_utils.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/atomselect_utils.cpython-39-arm-linux-gnueabihf.so
2024-06-05T15:55:36,003   building 'moleculekit.distance_utils' extension
2024-06-05T15:55:36,004   creating build/temp.linux-armv7l-cpython-39/moleculekit/distance_utils
2024-06-05T15:55:36,005   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-__t4ei7e/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/distance_utils/distance_utils.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/distance_utils/distance_utils.o -O3
2024-06-05T15:55:36,245   In file included from /tmp/pip-build-env-__t4ei7e/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2024-06-05T15:55:36,245                    from /tmp/pip-build-env-__t4ei7e/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2024-06-05T15:55:36,245                    from /tmp/pip-build-env-__t4ei7e/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5,
2024-06-05T15:55:36,245                    from moleculekit/distance_utils/distance_utils.cpp:1265:
2024-06-05T15:55:36,245   /tmp/pip-build-env-__t4ei7e/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2024-06-05T15:55:36,245      17 | #warning "Using deprecated NumPy API, disable it with " \
2024-06-05T15:55:36,246         |  ^~~~~~~
2024-06-05T15:55:37,918   moleculekit/distance_utils/distance_utils.cpp: In function ‘PyObject* __pyx_pf_11moleculekit_14distance_utils_2get_collisions(PyObject*, __Pyx_memviewslice, __Pyx_memviewslice, float)’:
2024-06-05T15:55:37,918   moleculekit/distance_utils/distance_utils.cpp:21359:33: warning: comparison of integer expressions of different signedness: ‘__pyx_t_11moleculekit_14distance_utils_UINT32_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
2024-06-05T15:55:37,918   21359 |   for (__pyx_t_3 = 0; __pyx_t_3 < __pyx_t_2; __pyx_t_3+=1) {
2024-06-05T15:55:37,918         |                       ~~~~~~~~~~^~~~~~~~~~~
2024-06-05T15:55:37,918   moleculekit/distance_utils/distance_utils.cpp:21371:35: warning: comparison of integer expressions of different signedness: ‘__pyx_t_11moleculekit_14distance_utils_UINT32_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
2024-06-05T15:55:37,919   21371 |     for (__pyx_t_6 = 0; __pyx_t_6 < __pyx_t_5; __pyx_t_6+=1) {
2024-06-05T15:55:37,919         |                         ~~~~~~~~~~^~~~~~~~~~~
2024-06-05T15:56:11,115   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/distance_utils/distance_utils.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/distance_utils.cpython-39-arm-linux-gnueabihf.so
2024-06-05T15:56:11,548   building 'moleculekit.occupancy_utils' extension
2024-06-05T15:56:11,549   creating build/temp.linux-armv7l-cpython-39/moleculekit/occupancy_utils
2024-06-05T15:56:11,550   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-__t4ei7e/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/occupancy_utils/occupancy_utils.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/occupancy_utils/occupancy_utils.o -O3
2024-06-05T15:56:11,797   In file included from /tmp/pip-build-env-__t4ei7e/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2024-06-05T15:56:11,797                    from /tmp/pip-build-env-__t4ei7e/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2024-06-05T15:56:11,797                    from /tmp/pip-build-env-__t4ei7e/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5,
2024-06-05T15:56:11,797                    from moleculekit/occupancy_utils/occupancy_utils.cpp:1265:
2024-06-05T15:56:11,797   /tmp/pip-build-env-__t4ei7e/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2024-06-05T15:56:11,798      17 | #warning "Using deprecated NumPy API, disable it with " \
2024-06-05T15:56:11,798         |  ^~~~~~~
2024-06-05T15:56:34,821   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/occupancy_utils/occupancy_utils.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/occupancy_utils.cpython-39-arm-linux-gnueabihf.so
2024-06-05T15:56:35,057   building 'moleculekit.cython_utils' extension
2024-06-05T15:56:35,058   creating build/temp.linux-armv7l-cpython-39/moleculekit/cython_utils
2024-06-05T15:56:35,059   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-__t4ei7e/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/cython_utils/cython_utils.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/cython_utils/cython_utils.o -O3
2024-06-05T15:56:35,292   In file included from /tmp/pip-build-env-__t4ei7e/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2024-06-05T15:56:35,293                    from /tmp/pip-build-env-__t4ei7e/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2024-06-05T15:56:35,293                    from /tmp/pip-build-env-__t4ei7e/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5,
2024-06-05T15:56:35,293                    from moleculekit/cython_utils/cython_utils.cpp:1265:
2024-06-05T15:56:35,293   /tmp/pip-build-env-__t4ei7e/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2024-06-05T15:56:35,293      17 | #warning "Using deprecated NumPy API, disable it with " \
2024-06-05T15:56:35,293         |  ^~~~~~~
2024-06-05T15:57:00,856   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/cython_utils/cython_utils.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/cython_utils.cpython-39-arm-linux-gnueabihf.so
2024-06-05T15:57:01,449   building 'moleculekit.xtc' extension
2024-06-05T15:57:01,449   creating build/temp.linux-armv7l-cpython-39/moleculekit/fileformats
2024-06-05T15:57:01,450   creating build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/xtc
2024-06-05T15:57:01,451   creating build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/src
2024-06-05T15:57:01,452   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/fileformats/xtc -Imoleculekit/fileformats/xtc/include/ -Imoleculekit/fileformats/xtc/ -I/tmp/pip-build-env-__t4ei7e/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/fileformats/xtc/src/xdrfile.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/src/xdrfile.o
2024-06-05T15:57:01,710   moleculekit/fileformats/xtc/src/xdrfile.cpp:66:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-06-05T15:57:01,710      66 |  "OK",
2024-06-05T15:57:01,710         |  ^~~~
2024-06-05T15:57:01,710   moleculekit/fileformats/xtc/src/xdrfile.cpp:67:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-06-05T15:57:01,711      67 |  "Header",
2024-06-05T15:57:01,711         |  ^~~~~~~~
2024-06-05T15:57:01,711   moleculekit/fileformats/xtc/src/xdrfile.cpp:68:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-06-05T15:57:01,711      68 |  "String",
2024-06-05T15:57:01,711         |  ^~~~~~~~
2024-06-05T15:57:01,711   moleculekit/fileformats/xtc/src/xdrfile.cpp:69:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-06-05T15:57:01,712      69 |  "Double",
2024-06-05T15:57:01,712         |  ^~~~~~~~
2024-06-05T15:57:01,712   moleculekit/fileformats/xtc/src/xdrfile.cpp:70:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-06-05T15:57:01,712      70 |  "Integer",
2024-06-05T15:57:01,712         |  ^~~~~~~~~
2024-06-05T15:57:01,712   moleculekit/fileformats/xtc/src/xdrfile.cpp:71:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-06-05T15:57:01,713      71 |  "Float",
2024-06-05T15:57:01,713         |  ^~~~~~~
2024-06-05T15:57:01,713   moleculekit/fileformats/xtc/src/xdrfile.cpp:72:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-06-05T15:57:01,713      72 |  "Unsigned integer",
2024-06-05T15:57:01,713         |  ^~~~~~~~~~~~~~~~~~
2024-06-05T15:57:01,713   moleculekit/fileformats/xtc/src/xdrfile.cpp:73:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-06-05T15:57:01,714      73 |  "Compressed 3D coordinate",
2024-06-05T15:57:01,714         |  ^~~~~~~~~~~~~~~~~~~~~~~~~~
2024-06-05T15:57:01,714   moleculekit/fileformats/xtc/src/xdrfile.cpp:74:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-06-05T15:57:01,714      74 |  "Closing file",
2024-06-05T15:57:01,714         |  ^~~~~~~~~~~~~~
2024-06-05T15:57:01,714   moleculekit/fileformats/xtc/src/xdrfile.cpp:75:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-06-05T15:57:01,715      75 |  "Magic number",
2024-06-05T15:57:01,715         |  ^~~~~~~~~~~~~~
2024-06-05T15:57:01,715   moleculekit/fileformats/xtc/src/xdrfile.cpp:76:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-06-05T15:57:01,715      76 |  "Not enough memory",
2024-06-05T15:57:01,715         |  ^~~~~~~~~~~~~~~~~~~
2024-06-05T15:57:01,715   moleculekit/fileformats/xtc/src/xdrfile.cpp:77:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-06-05T15:57:01,716      77 |  "End of file",
2024-06-05T15:57:01,716         |  ^~~~~~~~~~~~~
2024-06-05T15:57:01,716   moleculekit/fileformats/xtc/src/xdrfile.cpp:78:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-06-05T15:57:01,716      78 |  "File not found"
2024-06-05T15:57:01,716         |  ^~~~~~~~~~~~~~~~
2024-06-05T15:57:01,724   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘int sizeofint(int)’:
2024-06-05T15:57:01,725   moleculekit/fileformats/xtc/src/xdrfile.cpp:459:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-06-05T15:57:01,725     459 |     while (size >= num && num_of_bits < 32)
2024-06-05T15:57:01,725         |            ~~~~~^~~~~~
2024-06-05T15:57:01,726   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘int sizeofints(int, unsigned int*)’:
2024-06-05T15:57:01,726   moleculekit/fileformats/xtc/src/xdrfile.cpp:505:32: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-06-05T15:57:01,726     505 |     while (bytes[num_of_bytes] >= num)
2024-06-05T15:57:01,726         |            ~~~~~~~~~~~~~~~~~~~~^~~~~~
2024-06-05T15:57:01,729   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘void encodeints(int*, int, int, unsigned int*, unsigned int*)’:
2024-06-05T15:57:01,729   moleculekit/fileformats/xtc/src/xdrfile.cpp:614:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-06-05T15:57:01,729     614 |     if (num_of_bits >= num_of_bytes * 8)
2024-06-05T15:57:01,729         |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
2024-06-05T15:57:01,730   moleculekit/fileformats/xtc/src/xdrfile.cpp:616:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-06-05T15:57:01,730     616 |   for (i = 0; i < num_of_bytes; i++)
2024-06-05T15:57:01,730         |               ~~^~~~~~~~~~~~~~
2024-06-05T15:57:01,731   moleculekit/fileformats/xtc/src/xdrfile.cpp:624:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-06-05T15:57:01,731     624 |   for (i = 0; i < num_of_bytes-1; i++)
2024-06-05T15:57:01,731         |               ~~^~~~~~~~~~~~~~~~
2024-06-05T15:57:01,732   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘int decodebits(int*, int)’:
2024-06-05T15:57:01,733   moleculekit/fileformats/xtc/src/xdrfile.cpp:664:16: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-06-05T15:57:01,733     664 |   if (lastbits < num_of_bits)
2024-06-05T15:57:01,733         |       ~~~~~~~~~^~~~~~~~~~~~~
2024-06-05T15:57:01,736   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘int xdrfile_decompress_coord_float(float*, int*, float*, XDRFILE*)’:
2024-06-05T15:57:01,737   moleculekit/fileformats/xtc/src/xdrfile.cpp:785:10: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-06-05T15:57:01,737     785 |  if(size3>xfp->buf1size)
2024-06-05T15:57:01,737         |     ~~~~~^~~~~~~~~~~~~~
2024-06-05T15:57:01,739   moleculekit/fileformats/xtc/src/xdrfile.cpp:842:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-06-05T15:57:01,739     842 |  maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2024-06-05T15:57:01,739         |                   ^
2024-06-05T15:57:01,742   moleculekit/fileformats/xtc/src/xdrfile.cpp:932:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-06-05T15:57:01,743     932 |     if(countmjh >= size3 ) { return -1; }
2024-06-05T15:57:01,743         |        ~~~~~~~~~^~~~~~~~
2024-06-05T15:57:01,743   moleculekit/fileformats/xtc/src/xdrfile.cpp:935:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-06-05T15:57:01,743     935 |     if(countmjh >= size3 ) { return -1; }
2024-06-05T15:57:01,743         |        ~~~~~~~~~^~~~~~~~
2024-06-05T15:57:01,744   moleculekit/fileformats/xtc/src/xdrfile.cpp:938:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-06-05T15:57:01,744     938 |     if(countmjh >= size3 ) { return -1; }
2024-06-05T15:57:01,744         |        ~~~~~~~~~^~~~~~~~
2024-06-05T15:57:01,745   moleculekit/fileformats/xtc/src/xdrfile.cpp:945:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-06-05T15:57:01,745     945 |     if(countmjh >= size3 ) { return -1; }
2024-06-05T15:57:01,745         |        ~~~~~~~~~^~~~~~~~
2024-06-05T15:57:01,745   moleculekit/fileformats/xtc/src/xdrfile.cpp:948:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-06-05T15:57:01,746     948 |     if(countmjh >= size3 ) { return -1; }
2024-06-05T15:57:01,746         |        ~~~~~~~~~^~~~~~~~
2024-06-05T15:57:01,746   moleculekit/fileformats/xtc/src/xdrfile.cpp:951:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-06-05T15:57:01,746     951 |     if(countmjh >= size3 ) { return -1; }
2024-06-05T15:57:01,746         |        ~~~~~~~~~^~~~~~~~
2024-06-05T15:57:01,747   moleculekit/fileformats/xtc/src/xdrfile.cpp:756:17: warning: variable ‘minidx’ set but not used [-Wunused-but-set-variable]
2024-06-05T15:57:01,748     756 |  int smallidx,  minidx, maxidx;
2024-06-05T15:57:01,748         |                 ^~~~~~
2024-06-05T15:57:01,748   moleculekit/fileformats/xtc/src/xdrfile.cpp:759:25: warning: variable ‘larger’ set but not used [-Wunused-but-set-variable]
2024-06-05T15:57:01,748     759 |  int smallnum, smaller, larger, i, is_smaller, run;
2024-06-05T15:57:01,748         |                         ^~~~~~
2024-06-05T15:57:01,748   moleculekit/fileformats/xtc/src/xdrfile.cpp:763:6: warning: unused variable ‘errval’ [-Wunused-variable]
2024-06-05T15:57:01,748     763 |  int errval=1;
2024-06-05T15:57:01,749         |      ^~~~~~
2024-06-05T15:57:01,751   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘int xdrfile_compress_coord_float(float*, int, float, XDRFILE*)’:
2024-06-05T15:57:01,751   moleculekit/fileformats/xtc/src/xdrfile.cpp:1011:10: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-06-05T15:57:01,752    1011 |  if(size3>xfp->buf1size)
2024-06-05T15:57:01,752         |     ~~~~~^~~~~~~~~~~~~~
2024-06-05T15:57:01,754   moleculekit/fileformats/xtc/src/xdrfile.cpp:1068:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-06-05T15:57:01,754    1068 |     countmjh++; if( countmjh> size3) { return -1; }
2024-06-05T15:57:01,754         |                     ~~~~~~~~^~~~~~~
2024-06-05T15:57:01,755   moleculekit/fileformats/xtc/src/xdrfile.cpp:1084:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-06-05T15:57:01,755    1084 |    countmjh++; if( countmjh> size3) { return -1; }
2024-06-05T15:57:01,756         |                    ~~~~~~~~^~~~~~~
2024-06-05T15:57:01,756   moleculekit/fileformats/xtc/src/xdrfile.cpp:1098:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-06-05T15:57:01,757    1098 |    countmjh++; if( countmjh> size3) { return -1; }
2024-06-05T15:57:01,757         |                    ~~~~~~~~^~~~~~~
2024-06-05T15:57:01,759   moleculekit/fileformats/xtc/src/xdrfile.cpp:1137:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-06-05T15:57:01,759    1137 |  while (smallidx < LASTIDX && magicints[smallidx] < mindiff)
2024-06-05T15:57:01,759         |                  ^
2024-06-05T15:57:01,760   moleculekit/fileformats/xtc/src/xdrfile.cpp:1143:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-06-05T15:57:01,760    1143 |  maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2024-06-05T15:57:01,760         |                   ^
2024-06-05T15:57:01,764   moleculekit/fileformats/xtc/src/xdrfile.cpp:1275:8: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-06-05T15:57:01,764    1275 |  if(tmp==(unsigned int)buf2[0])
2024-06-05T15:57:01,764         |     ~~~^~~~~~~~~~~~~~~~~~~~~~~
2024-06-05T15:57:01,765   moleculekit/fileformats/xtc/src/xdrfile.cpp:1001:6: warning: variable ‘errval’ set but not used [-Wunused-but-set-variable]
2024-06-05T15:57:01,765    1001 |  int errval;
2024-06-05T15:57:01,765         |      ^~~~~~
2024-06-05T15:57:01,768   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘int xdrfile_decompress_coord_double(double*, int*, double*, XDRFILE*)’:
2024-06-05T15:57:01,768   moleculekit/fileformats/xtc/src/xdrfile.cpp:1316:10: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-06-05T15:57:01,769    1316 |  if(size3>xfp->buf1size)
2024-06-05T15:57:01,769         |     ~~~~~^~~~~~~~~~~~~~
2024-06-05T15:57:01,771   moleculekit/fileformats/xtc/src/xdrfile.cpp:1377:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-06-05T15:57:01,771    1377 |  maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2024-06-05T15:57:01,771         |                   ^
2024-06-05T15:57:01,775   moleculekit/fileformats/xtc/src/xdrfile.cpp:1289:25: warning: variable ‘minidx’ set but not used [-Wunused-but-set-variable]
2024-06-05T15:57:01,775    1289 |  int smallidx,  maxidx, minidx;
2024-06-05T15:57:01,775         |                         ^~~~~~
2024-06-05T15:57:01,775   moleculekit/fileformats/xtc/src/xdrfile.cpp:1292:25: warning: variable ‘larger’ set but not used [-Wunused-but-set-variable]
2024-06-05T15:57:01,775    1292 |  int smallnum, smaller, larger, i, is_smaller, run;
2024-06-05T15:57:01,775         |                         ^~~~~~
2024-06-05T15:57:01,776   moleculekit/fileformats/xtc/src/xdrfile.cpp:1297:6: warning: unused variable ‘errval’ [-Wunused-variable]
2024-06-05T15:57:01,776    1297 |  int errval=1;
2024-06-05T15:57:01,776         |      ^~~~~~
2024-06-05T15:57:01,779   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘int xdrfile_compress_coord_double(double*, int, double, XDRFILE*)’:
2024-06-05T15:57:01,779   moleculekit/fileformats/xtc/src/xdrfile.cpp:1513:10: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-06-05T15:57:01,780    1513 |  if(size3>xfp->buf1size) {
2024-06-05T15:57:01,780         |     ~~~~~^~~~~~~~~~~~~~
2024-06-05T15:57:01,786   moleculekit/fileformats/xtc/src/xdrfile.cpp:1628:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-06-05T15:57:01,787    1628 |  while (smallidx < LASTIDX && magicints[smallidx] < mindiff) {
2024-06-05T15:57:01,787         |                  ^
2024-06-05T15:57:01,788   moleculekit/fileformats/xtc/src/xdrfile.cpp:1633:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-06-05T15:57:01,788    1633 |  maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2024-06-05T15:57:01,788         |                   ^
2024-06-05T15:57:01,794   moleculekit/fileformats/xtc/src/xdrfile.cpp:1743:8: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-06-05T15:57:01,794    1743 |  if(tmp==(unsigned int)buf2[0])
2024-06-05T15:57:01,795         |     ~~~^~~~~~~~~~~~~~~~~~~~~~~
2024-06-05T15:57:01,795   moleculekit/fileformats/xtc/src/xdrfile.cpp:1504:6: warning: variable ‘errval’ set but not used [-Wunused-but-set-variable]
2024-06-05T15:57:01,795    1504 |  int errval=1;
2024-06-05T15:57:01,795         |      ^~~~~~
2024-06-05T15:57:04,050   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/fileformats/xtc -Imoleculekit/fileformats/xtc/include/ -Imoleculekit/fileformats/xtc/ -I/tmp/pip-build-env-__t4ei7e/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/fileformats/xtc/src/xdrfile_xtc.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/src/xdrfile_xtc.o
2024-06-05T15:57:04,311   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/fileformats/xtc -Imoleculekit/fileformats/xtc/include/ -Imoleculekit/fileformats/xtc/ -I/tmp/pip-build-env-__t4ei7e/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/fileformats/xtc/src/xtc.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/src/xtc.o
2024-06-05T15:57:04,890   moleculekit/fileformats/xtc/src/xtc.cpp: In function ‘void xtc_read_new(char*, float*, float*, float*, int*, int, int)’:
2024-06-05T15:57:04,891   moleculekit/fileformats/xtc/src/xtc.cpp:234:23: warning: comparison of integer expressions of different signedness: ‘uint64_t’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare]
2024-06-05T15:57:04,891     234 |   for (aidx = 0; aidx < natoms; aidx++)
2024-06-05T15:57:04,891         |                  ~~~~~^~~~~~~~
2024-06-05T15:57:04,897   moleculekit/fileformats/xtc/src/xtc.cpp: In function ‘int xtc_write(char*, int, int, int*, float*, float*, float*)’:
2024-06-05T15:57:04,897   moleculekit/fileformats/xtc/src/xtc.cpp:436:16: warning: comparison of integer expressions of different signedness: ‘uint64_t’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare]
2024-06-05T15:57:04,897     436 |  for (f = 0; f < nframes; f++)
2024-06-05T15:57:04,897         |              ~~^~~~~~~~~
2024-06-05T15:57:04,898   moleculekit/fileformats/xtc/src/xtc.cpp:451:17: warning: comparison of integer expressions of different signedness: ‘uint64_t’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare]
2024-06-05T15:57:04,898     451 |   for (i = 0; i < natoms; i++)
2024-06-05T15:57:04,898         |               ~~^~~~~~~~
2024-06-05T15:57:04,900   moleculekit/fileformats/xtc/src/xtc.cpp: In function ‘void xtc_read_frame(char*, float*, float*, float*, int*, int, int, int, int)’:
2024-06-05T15:57:04,900   moleculekit/fileformats/xtc/src/xtc.cpp:541:24: warning: comparison of integer expressions of different signedness: ‘uint64_t’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare]
2024-06-05T15:57:04,901     541 |    for (aidx = 0; aidx < natoms; aidx++)
2024-06-05T15:57:04,901         |                   ~~~~~^~~~~~~~
2024-06-05T15:57:04,903   moleculekit/fileformats/xtc/src/xtc.cpp:610:24: warning: comparison of integer expressions of different signedness: ‘uint64_t’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare]
2024-06-05T15:57:04,903     610 |    for (aidx = 0; aidx < natoms; aidx++)
2024-06-05T15:57:04,903         |                   ~~~~~^~~~~~~~
2024-06-05T15:57:05,693   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/fileformats/xtc -Imoleculekit/fileformats/xtc/include/ -Imoleculekit/fileformats/xtc/ -I/tmp/pip-build-env-__t4ei7e/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/fileformats/xtc/xtc.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/xtc.o
2024-06-05T15:57:05,938   In file included from /tmp/pip-build-env-__t4ei7e/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2024-06-05T15:57:05,938                    from /tmp/pip-build-env-__t4ei7e/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2024-06-05T15:57:05,938                    from /tmp/pip-build-env-__t4ei7e/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5,
2024-06-05T15:57:05,939                    from moleculekit/fileformats/xtc/xtc.cpp:1269:
2024-06-05T15:57:05,939   /tmp/pip-build-env-__t4ei7e/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2024-06-05T15:57:05,939      17 | #warning "Using deprecated NumPy API, disable it with " \
2024-06-05T15:57:05,939         |  ^~~~~~~
2024-06-05T15:57:26,137   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/src/xdrfile.o build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/src/xdrfile_xtc.o build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/src/xtc.o build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/xtc.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/xtc.cpython-39-arm-linux-gnueabihf.so
2024-06-05T15:57:26,450   building 'moleculekit.trr' extension
2024-06-05T15:57:26,451   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/fileformats/xtc -Imoleculekit/fileformats/xtc/include/ -Imoleculekit/fileformats/xtc/ -I/tmp/pip-build-env-__t4ei7e/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/fileformats/xtc/src/xdr_seek.c -o build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/src/xdr_seek.o
2024-06-05T15:57:26,569   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/fileformats/xtc -Imoleculekit/fileformats/xtc/include/ -Imoleculekit/fileformats/xtc/ -I/tmp/pip-build-env-__t4ei7e/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/fileformats/xtc/src/xdrfile.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/src/xdrfile.o
2024-06-05T15:57:26,806   moleculekit/fileformats/xtc/src/xdrfile.cpp:66:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-06-05T15:57:26,806      66 |  "OK",
2024-06-05T15:57:26,806         |  ^~~~
2024-06-05T15:57:26,806   moleculekit/fileformats/xtc/src/xdrfile.cpp:67:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-06-05T15:57:26,807      67 |  "Header",
2024-06-05T15:57:26,807         |  ^~~~~~~~
2024-06-05T15:57:26,807   moleculekit/fileformats/xtc/src/xdrfile.cpp:68:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-06-05T15:57:26,807      68 |  "String",
2024-06-05T15:57:26,807         |  ^~~~~~~~
2024-06-05T15:57:26,807   moleculekit/fileformats/xtc/src/xdrfile.cpp:69:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-06-05T15:57:26,808      69 |  "Double",
2024-06-05T15:57:26,808         |  ^~~~~~~~
2024-06-05T15:57:26,808   moleculekit/fileformats/xtc/src/xdrfile.cpp:70:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-06-05T15:57:26,808      70 |  "Integer",
2024-06-05T15:57:26,808         |  ^~~~~~~~~
2024-06-05T15:57:26,808   moleculekit/fileformats/xtc/src/xdrfile.cpp:71:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-06-05T15:57:26,808      71 |  "Float",
2024-06-05T15:57:26,809         |  ^~~~~~~
2024-06-05T15:57:26,809   moleculekit/fileformats/xtc/src/xdrfile.cpp:72:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-06-05T15:57:26,809      72 |  "Unsigned integer",
2024-06-05T15:57:26,809         |  ^~~~~~~~~~~~~~~~~~
2024-06-05T15:57:26,809   moleculekit/fileformats/xtc/src/xdrfile.cpp:73:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-06-05T15:57:26,809      73 |  "Compressed 3D coordinate",
2024-06-05T15:57:26,809         |  ^~~~~~~~~~~~~~~~~~~~~~~~~~
2024-06-05T15:57:26,809   moleculekit/fileformats/xtc/src/xdrfile.cpp:74:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-06-05T15:57:26,810      74 |  "Closing file",
2024-06-05T15:57:26,810         |  ^~~~~~~~~~~~~~
2024-06-05T15:57:26,810   moleculekit/fileformats/xtc/src/xdrfile.cpp:75:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-06-05T15:57:26,810      75 |  "Magic number",
2024-06-05T15:57:26,810         |  ^~~~~~~~~~~~~~
2024-06-05T15:57:26,810   moleculekit/fileformats/xtc/src/xdrfile.cpp:76:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-06-05T15:57:26,810      76 |  "Not enough memory",
2024-06-05T15:57:26,811         |  ^~~~~~~~~~~~~~~~~~~
2024-06-05T15:57:26,811   moleculekit/fileformats/xtc/src/xdrfile.cpp:77:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-06-05T15:57:26,811      77 |  "End of file",
2024-06-05T15:57:26,811         |  ^~~~~~~~~~~~~
2024-06-05T15:57:26,811   moleculekit/fileformats/xtc/src/xdrfile.cpp:78:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-06-05T15:57:26,811      78 |  "File not found"
2024-06-05T15:57:26,811         |  ^~~~~~~~~~~~~~~~
2024-06-05T15:57:26,815   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘int sizeofint(int)’:
2024-06-05T15:57:26,816   moleculekit/fileformats/xtc/src/xdrfile.cpp:459:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-06-05T15:57:26,816     459 |     while (size >= num && num_of_bits < 32)
2024-06-05T15:57:26,816         |            ~~~~~^~~~~~
2024-06-05T15:57:26,816   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘int sizeofints(int, unsigned int*)’:
2024-06-05T15:57:26,816   moleculekit/fileformats/xtc/src/xdrfile.cpp:505:32: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-06-05T15:57:26,816     505 |     while (bytes[num_of_bytes] >= num)
2024-06-05T15:57:26,817         |            ~~~~~~~~~~~~~~~~~~~~^~~~~~
2024-06-05T15:57:26,818   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘void encodeints(int*, int, int, unsigned int*, unsigned int*)’:
2024-06-05T15:57:26,819   moleculekit/fileformats/xtc/src/xdrfile.cpp:614:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-06-05T15:57:26,819     614 |     if (num_of_bits >= num_of_bytes * 8)
2024-06-05T15:57:26,819         |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
2024-06-05T15:57:26,819   moleculekit/fileformats/xtc/src/xdrfile.cpp:616:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-06-05T15:57:26,819     616 |   for (i = 0; i < num_of_bytes; i++)
2024-06-05T15:57:26,819         |               ~~^~~~~~~~~~~~~~
2024-06-05T15:57:26,820   moleculekit/fileformats/xtc/src/xdrfile.cpp:624:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-06-05T15:57:26,820     624 |   for (i = 0; i < num_of_bytes-1; i++)
2024-06-05T15:57:26,820         |               ~~^~~~~~~~~~~~~~~~
2024-06-05T15:57:26,820   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘int decodebits(int*, int)’:
2024-06-05T15:57:26,820   moleculekit/fileformats/xtc/src/xdrfile.cpp:664:16: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-06-05T15:57:26,820     664 |   if (lastbits < num_of_bits)
2024-06-05T15:57:26,820         |       ~~~~~~~~~^~~~~~~~~~~~~
2024-06-05T15:57:26,824   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘int xdrfile_decompress_coord_float(float*, int*, float*, XDRFILE*)’:
2024-06-05T15:57:26,824   moleculekit/fileformats/xtc/src/xdrfile.cpp:785:10: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-06-05T15:57:26,824     785 |  if(size3>xfp->buf1size)
2024-06-05T15:57:26,824         |     ~~~~~^~~~~~~~~~~~~~
2024-06-05T15:57:26,826   moleculekit/fileformats/xtc/src/xdrfile.cpp:842:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-06-05T15:57:26,826     842 |  maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2024-06-05T15:57:26,826         |                   ^
2024-06-05T15:57:26,828   moleculekit/fileformats/xtc/src/xdrfile.cpp:932:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-06-05T15:57:26,829     932 |     if(countmjh >= size3 ) { return -1; }
2024-06-05T15:57:26,829         |        ~~~~~~~~~^~~~~~~~
2024-06-05T15:57:26,829   moleculekit/fileformats/xtc/src/xdrfile.cpp:935:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-06-05T15:57:26,829     935 |     if(countmjh >= size3 ) { return -1; }
2024-06-05T15:57:26,829         |        ~~~~~~~~~^~~~~~~~
2024-06-05T15:57:26,829   moleculekit/fileformats/xtc/src/xdrfile.cpp:938:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-06-05T15:57:26,829     938 |     if(countmjh >= size3 ) { return -1; }
2024-06-05T15:57:26,830         |        ~~~~~~~~~^~~~~~~~
2024-06-05T15:57:26,830   moleculekit/fileformats/xtc/src/xdrfile.cpp:945:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-06-05T15:57:26,830     945 |     if(countmjh >= size3 ) { return -1; }
2024-06-05T15:57:26,830         |        ~~~~~~~~~^~~~~~~~
2024-06-05T15:57:26,830   moleculekit/fileformats/xtc/src/xdrfile.cpp:948:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-06-05T15:57:26,830     948 |     if(countmjh >= size3 ) { return -1; }
2024-06-05T15:57:26,830         |        ~~~~~~~~~^~~~~~~~
2024-06-05T15:57:26,830   moleculekit/fileformats/xtc/src/xdrfile.cpp:951:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-06-05T15:57:26,831     951 |     if(countmjh >= size3 ) { return -1; }
2024-06-05T15:57:26,831         |        ~~~~~~~~~^~~~~~~~
2024-06-05T15:57:26,831   moleculekit/fileformats/xtc/src/xdrfile.cpp:756:17: warning: variable ‘minidx’ set but not used [-Wunused-but-set-variable]
2024-06-05T15:57:26,831     756 |  int smallidx,  minidx, maxidx;
2024-06-05T15:57:26,831         |                 ^~~~~~
2024-06-05T15:57:26,831   moleculekit/fileformats/xtc/src/xdrfile.cpp:759:25: warning: variable ‘larger’ set but not used [-Wunused-but-set-variable]
2024-06-05T15:57:26,831     759 |  int smallnum, smaller, larger, i, is_smaller, run;
2024-06-05T15:57:26,831         |                         ^~~~~~
2024-06-05T15:57:26,832   moleculekit/fileformats/xtc/src/xdrfile.cpp:763:6: warning: unused variable ‘errval’ [-Wunused-variable]
2024-06-05T15:57:26,832     763 |  int errval=1;
2024-06-05T15:57:26,832         |      ^~~~~~
2024-06-05T15:57:26,833   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘int xdrfile_compress_coord_float(float*, int, float, XDRFILE*)’:
2024-06-05T15:57:26,833   moleculekit/fileformats/xtc/src/xdrfile.cpp:1011:10: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-06-05T15:57:26,833    1011 |  if(size3>xfp->buf1size)
2024-06-05T15:57:26,833         |     ~~~~~^~~~~~~~~~~~~~
2024-06-05T15:57:26,835   moleculekit/fileformats/xtc/src/xdrfile.cpp:1068:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-06-05T15:57:26,835    1068 |     countmjh++; if( countmjh> size3) { return -1; }
2024-06-05T15:57:26,835         |                     ~~~~~~~~^~~~~~~
2024-06-05T15:57:26,835   moleculekit/fileformats/xtc/src/xdrfile.cpp:1084:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-06-05T15:57:26,836    1084 |    countmjh++; if( countmjh> size3) { return -1; }
2024-06-05T15:57:26,836         |                    ~~~~~~~~^~~~~~~
2024-06-05T15:57:26,836   moleculekit/fileformats/xtc/src/xdrfile.cpp:1098:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-06-05T15:57:26,836    1098 |    countmjh++; if( countmjh> size3) { return -1; }
2024-06-05T15:57:26,836         |                    ~~~~~~~~^~~~~~~
2024-06-05T15:57:26,838   moleculekit/fileformats/xtc/src/xdrfile.cpp:1137:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-06-05T15:57:26,838    1137 |  while (smallidx < LASTIDX && magicints[smallidx] < mindiff)
2024-06-05T15:57:26,838         |                  ^
2024-06-05T15:57:26,838   moleculekit/fileformats/xtc/src/xdrfile.cpp:1143:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-06-05T15:57:26,838    1143 |  maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2024-06-05T15:57:26,838         |                   ^
2024-06-05T15:57:26,842   moleculekit/fileformats/xtc/src/xdrfile.cpp:1275:8: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-06-05T15:57:26,842    1275 |  if(tmp==(unsigned int)buf2[0])
2024-06-05T15:57:26,842         |     ~~~^~~~~~~~~~~~~~~~~~~~~~~
2024-06-05T15:57:26,842   moleculekit/fileformats/xtc/src/xdrfile.cpp:1001:6: warning: variable ‘errval’ set but not used [-Wunused-but-set-variable]
2024-06-05T15:57:26,842    1001 |  int errval;
2024-06-05T15:57:26,843         |      ^~~~~~
2024-06-05T15:57:26,845   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘int xdrfile_decompress_coord_double(double*, int*, double*, XDRFILE*)’:
2024-06-05T15:57:26,845   moleculekit/fileformats/xtc/src/xdrfile.cpp:1316:10: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-06-05T15:57:26,845    1316 |  if(size3>xfp->buf1size)
2024-06-05T15:57:26,846         |     ~~~~~^~~~~~~~~~~~~~
2024-06-05T15:57:26,847   moleculekit/fileformats/xtc/src/xdrfile.cpp:1377:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-06-05T15:57:26,847    1377 |  maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2024-06-05T15:57:26,847         |                   ^
2024-06-05T15:57:26,850   moleculekit/fileformats/xtc/src/xdrfile.cpp:1289:25: warning: variable ‘minidx’ set but not used [-Wunused-but-set-variable]
2024-06-05T15:57:26,850    1289 |  int smallidx,  maxidx, minidx;
2024-06-05T15:57:26,850         |                         ^~~~~~
2024-06-05T15:57:26,850   moleculekit/fileformats/xtc/src/xdrfile.cpp:1292:25: warning: variable ‘larger’ set but not used [-Wunused-but-set-variable]
2024-06-05T15:57:26,851    1292 |  int smallnum, smaller, larger, i, is_smaller, run;
2024-06-05T15:57:26,851         |                         ^~~~~~
2024-06-05T15:57:26,851   moleculekit/fileformats/xtc/src/xdrfile.cpp:1297:6: warning: unused variable ‘errval’ [-Wunused-variable]
2024-06-05T15:57:26,851    1297 |  int errval=1;
2024-06-05T15:57:26,851         |      ^~~~~~
2024-06-05T15:57:26,852   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘int xdrfile_compress_coord_double(double*, int, double, XDRFILE*)’:
2024-06-05T15:57:26,852   moleculekit/fileformats/xtc/src/xdrfile.cpp:1513:10: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-06-05T15:57:26,852    1513 |  if(size3>xfp->buf1size) {
2024-06-05T15:57:26,853         |     ~~~~~^~~~~~~~~~~~~~
2024-06-05T15:57:26,857   moleculekit/fileformats/xtc/src/xdrfile.cpp:1628:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-06-05T15:57:26,857    1628 |  while (smallidx < LASTIDX && magicints[smallidx] < mindiff) {
2024-06-05T15:57:26,857         |                  ^
2024-06-05T15:57:26,857   moleculekit/fileformats/xtc/src/xdrfile.cpp:1633:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-06-05T15:57:26,857    1633 |  maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2024-06-05T15:57:26,857         |                   ^
2024-06-05T15:57:26,861   moleculekit/fileformats/xtc/src/xdrfile.cpp:1743:8: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-06-05T15:57:26,861    1743 |  if(tmp==(unsigned int)buf2[0])
2024-06-05T15:57:26,861         |     ~~~^~~~~~~~~~~~~~~~~~~~~~~
2024-06-05T15:57:26,861   moleculekit/fileformats/xtc/src/xdrfile.cpp:1504:6: warning: variable ‘errval’ set but not used [-Wunused-but-set-variable]
2024-06-05T15:57:26,861    1504 |  int errval=1;
2024-06-05T15:57:26,861         |      ^~~~~~
2024-06-05T15:57:29,100   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/fileformats/xtc -Imoleculekit/fileformats/xtc/include/ -Imoleculekit/fileformats/xtc/ -I/tmp/pip-build-env-__t4ei7e/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/fileformats/xtc/src/xdrfile_trr.c -o build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/src/xdrfile_trr.o
2024-06-05T15:57:29,191   moleculekit/fileformats/xtc/src/xdrfile_trr.c: In function ‘do_trnheader’:
2024-06-05T15:57:29,191   moleculekit/fileformats/xtc/src/xdrfile_trr.c:111:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare]
2024-06-05T15:57:29,191     111 |         if (slen != strlen(version)+1)
2024-06-05T15:57:29,192         |                  ^~
2024-06-05T15:57:29,192   moleculekit/fileformats/xtc/src/xdrfile_trr.c:121:46: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare]
2024-06-05T15:57:29,192     121 |         if (xdrfile_write_string(version,xd) != (strlen(version)+1) )
2024-06-05T15:57:29,192         |                                              ^~
2024-06-05T15:57:29,756   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/fileformats/xtc -Imoleculekit/fileformats/xtc/include/ -Imoleculekit/fileformats/xtc/ -I/tmp/pip-build-env-__t4ei7e/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/fileformats/xtc/trr.c -o build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/trr.o
2024-06-05T15:57:30,080   In file included from /tmp/pip-build-env-__t4ei7e/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2024-06-05T15:57:30,081                    from /tmp/pip-build-env-__t4ei7e/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2024-06-05T15:57:30,081                    from /tmp/pip-build-env-__t4ei7e/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5,
2024-06-05T15:57:30,081                    from moleculekit/fileformats/xtc/trr.c:1261:
2024-06-05T15:57:30,081   /tmp/pip-build-env-__t4ei7e/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2024-06-05T15:57:30,081      17 | #warning "Using deprecated NumPy API, disable it with " \
2024-06-05T15:57:30,081         |  ^~~~~~~
2024-06-05T15:57:30,705   moleculekit/fileformats/xtc/trr.c: In function ‘__pyx_pf_11moleculekit_3trr_17TRRTrajectoryFile_22_calc_len_and_offsets’:
2024-06-05T15:57:30,713   moleculekit/fileformats/xtc/trr.c:16352:37: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘Py_ssize_t’ {aka ‘int’} [-Wsign-compare]
2024-06-05T15:57:30,714   16352 |       __pyx_t_6 = (__pyx_v_n_frames == __pyx_t_14);
2024-06-05T15:57:30,714         |                                     ^~
2024-06-05T15:57:51,039   moleculekit/fileformats/xtc/trr.c: In function ‘__pyx_pw_11moleculekit_3trr_17TRRTrajectoryFile_17_write’:
2024-06-05T15:57:51,040   moleculekit/fileformats/xtc/trr.c:1163:40: warning: ‘__pyx_v_status’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2024-06-05T15:57:51,040    1163 |   #define PyInt_FromLong               PyLong_FromLong
2024-06-05T15:57:51,040         |                                        ^~~~~~~~~~~~~~~
2024-06-05T15:57:51,048   moleculekit/fileformats/xtc/trr.c:14260:7: note: ‘__pyx_v_status’ was declared here
2024-06-05T15:57:51,048   14260 |   int __pyx_v_status;
2024-06-05T15:57:51,048         |       ^~~~~~~~~~~~~~
2024-06-05T15:58:01,395   moleculekit/fileformats/xtc/trr.c: In function ‘__pyx_pf_11moleculekit_3trr_17TRRTrajectoryFile_12_read’:
2024-06-05T15:58:01,402   moleculekit/fileformats/xtc/trr.c:11559:19: warning: ‘__pyx_pybuffernd_forces.diminfo[2].shape’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2024-06-05T15:58:01,402   11559 |         } else if (unlikely(__pyx_t_29 >= __pyx_pybuffernd_forces.diminfo[2].shape)) __pyx_t_4 = 2;
2024-06-05T15:58:01,402         |                   ^
2024-06-05T15:58:01,409   moleculekit/fileformats/xtc/trr.c:11555:19: warning: ‘__pyx_pybuffernd_forces.diminfo[1].shape’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2024-06-05T15:58:01,409   11555 |         } else if (unlikely(__pyx_t_30 >= __pyx_pybuffernd_forces.diminfo[1].shape)) __pyx_t_4 = 1;
2024-06-05T15:58:01,410         |                   ^
2024-06-05T15:58:01,410   moleculekit/fileformats/xtc/trr.c:2509:95: warning: ‘__pyx_pybuffernd_forces.diminfo[0].strides’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2024-06-05T15:58:01,411    2509 | #define __Pyx_BufPtrCContig3d(type, buf, i0, s0, i1, s1, i2, s2) ((type)((char*)buf + i0 * s0 + i1 * s1) + i2)
2024-06-05T15:58:01,411         |                                                                                               ^
2024-06-05T15:58:01,416   moleculekit/fileformats/xtc/trr.c:10091:21: note: ‘__pyx_pybuffernd_forces.diminfo[0].strides’ was declared here
2024-06-05T15:58:01,416   10091 |   __Pyx_LocalBuf_ND __pyx_pybuffernd_forces;
2024-06-05T15:58:01,416         |                     ^~~~~~~~~~~~~~~~~~~~~~~
2024-06-05T15:58:01,422   moleculekit/fileformats/xtc/trr.c:11549:59: warning: ‘__pyx_pybuffernd_forces.diminfo[0].shape’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2024-06-05T15:58:01,422   11549 |           __pyx_t_28 += __pyx_pybuffernd_forces.diminfo[0].shape;
2024-06-05T15:58:01,423         |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~
2024-06-05T15:58:01,429   moleculekit/fileformats/xtc/trr.c:11502:19: warning: ‘__pyx_pybuffernd_vel.diminfo[2].shape’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2024-06-05T15:58:01,429   11502 |         } else if (unlikely(__pyx_t_30 >= __pyx_pybuffernd_vel.diminfo[2].shape)) __pyx_t_4 = 2;
2024-06-05T15:58:01,429         |                   ^
2024-06-05T15:58:01,436   moleculekit/fileformats/xtc/trr.c:11498:19: warning: ‘__pyx_pybuffernd_vel.diminfo[1].shape’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2024-06-05T15:58:01,436   11498 |         } else if (unlikely(__pyx_t_29 >= __pyx_pybuffernd_vel.diminfo[1].shape)) __pyx_t_4 = 1;
2024-06-05T15:58:01,436         |                   ^
2024-06-05T15:58:01,437   moleculekit/fileformats/xtc/trr.c:2509:95: warning: ‘__pyx_pybuffernd_vel.diminfo[0].strides’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2024-06-05T15:58:01,437    2509 | #define __Pyx_BufPtrCContig3d(type, buf, i0, s0, i1, s1, i2, s2) ((type)((char*)buf + i0 * s0 + i1 * s1) + i2)
2024-06-05T15:58:01,437         |                                                                                               ^
2024-06-05T15:58:01,443   moleculekit/fileformats/xtc/trr.c:10107:21: note: ‘__pyx_pybuffernd_vel.diminfo[0].strides’ was declared here
2024-06-05T15:58:01,443   10107 |   __Pyx_LocalBuf_ND __pyx_pybuffernd_vel;
2024-06-05T15:58:01,443         |                     ^~~~~~~~~~~~~~~~~~~~
2024-06-05T15:58:01,449   moleculekit/fileformats/xtc/trr.c:11492:56: warning: ‘__pyx_pybuffernd_vel.diminfo[0].shape’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2024-06-05T15:58:01,449   11492 |           __pyx_t_28 += __pyx_pybuffernd_vel.diminfo[0].shape;
2024-06-05T15:58:01,449         |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~
2024-06-05T15:58:01,455   moleculekit/fileformats/xtc/trr.c:11891:17: warning: ‘__pyx_pybuffernd_xyz_buffer.diminfo[1].shape’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2024-06-05T15:58:01,455   11891 |       } else if (unlikely(__pyx_t_29 >= __pyx_pybuffernd_xyz_buffer.diminfo[1].shape)) __pyx_t_4 = 1;
2024-06-05T15:58:01,455         |                 ^
2024-06-05T15:58:01,462   moleculekit/fileformats/xtc/trr.c:11887:17: warning: ‘__pyx_pybuffernd_xyz_buffer.diminfo[0].shape’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2024-06-05T15:58:01,462   11887 |       } else if (unlikely(__pyx_t_30 >= __pyx_pybuffernd_xyz_buffer.diminfo[0].shape)) __pyx_t_4 = 0;
2024-06-05T15:58:01,462         |                 ^
2024-06-05T15:58:01,469   moleculekit/fileformats/xtc/trr.c:11732:19: warning: ‘__pyx_pybuffernd_vel_buffer.diminfo[1].shape’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2024-06-05T15:58:01,469   11732 |         } else if (unlikely(__pyx_t_35 >= __pyx_pybuffernd_vel_buffer.diminfo[1].shape)) __pyx_t_4 = 1;
2024-06-05T15:58:01,470         |                   ^
2024-06-05T15:58:01,476   moleculekit/fileformats/xtc/trr.c:11728:19: warning: ‘__pyx_pybuffernd_vel_buffer.diminfo[0].shape’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2024-06-05T15:58:01,476   11728 |         } else if (unlikely(__pyx_t_36 >= __pyx_pybuffernd_vel_buffer.diminfo[0].shape)) __pyx_t_4 = 0;
2024-06-05T15:58:01,477         |                   ^
2024-06-05T15:58:01,482   moleculekit/fileformats/xtc/trr.c:11784:19: warning: ‘__pyx_pybuffernd_forces_buffer.diminfo[1].shape’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2024-06-05T15:58:01,482   11784 |         } else if (unlikely(__pyx_t_36 >= __pyx_pybuffernd_forces_buffer.diminfo[1].shape)) __pyx_t_4 = 1;
2024-06-05T15:58:01,483         |                   ^
2024-06-05T15:58:01,489   moleculekit/fileformats/xtc/trr.c:11780:19: warning: ‘__pyx_pybuffernd_forces_buffer.diminfo[0].shape’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2024-06-05T15:58:01,490   11780 |         } else if (unlikely(__pyx_t_35 >= __pyx_pybuffernd_forces_buffer.diminfo[0].shape)) __pyx_t_4 = 0;
2024-06-05T15:58:01,490         |                   ^
2024-06-05T15:58:07,993   arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/src/xdr_seek.o build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/src/xdrfile.o build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/src/xdrfile_trr.o build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/trr.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/trr.cpython-39-arm-linux-gnueabihf.so
2024-06-05T15:58:08,221   building 'moleculekit.dcd' extension
2024-06-05T15:58:08,222   creating build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/dcd
2024-06-05T15:58:08,225   creating build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/dcd/src
2024-06-05T15:58:08,226   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/fileformats/dcd -Imoleculekit/fileformats/dcd/include/ -Imoleculekit/fileformats/dcd/ -I/tmp/pip-build-env-__t4ei7e/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/fileformats/dcd/dcd.c -o build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/dcd/dcd.o
2024-06-05T15:58:08,552   In file included from /tmp/pip-build-env-__t4ei7e/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2024-06-05T15:58:08,552                    from /tmp/pip-build-env-__t4ei7e/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2024-06-05T15:58:08,552                    from /tmp/pip-build-env-__t4ei7e/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5,
2024-06-05T15:58:08,552                    from moleculekit/fileformats/dcd/dcd.c:1256:
2024-06-05T15:58:08,552   /tmp/pip-build-env-__t4ei7e/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2024-06-05T15:58:08,553      17 | #warning "Using deprecated NumPy API, disable it with " \
2024-06-05T15:58:08,553         |  ^~~~~~~
2024-06-05T15:58:09,587   In file included from moleculekit/fileformats/dcd/include/dcdplugin.h:1,
2024-06-05T15:58:09,587                    from moleculekit/fileformats/dcd/dcd.c:1262:
2024-06-05T15:58:09,587   moleculekit/fileformats/dcd/include/fastio.h:474:12: warning: ‘fio_write_str’ defined but not used [-Wunused-function]
2024-06-05T15:58:09,587     474 | static int fio_write_str(fio_fd fd, const char *str) {
2024-06-05T15:58:09,587         |            ^~~~~~~~~~~~~
2024-06-05T15:58:09,588   moleculekit/fileformats/dcd/include/fastio.h:470:12: warning: ‘fio_read_int32’ defined but not used [-Wunused-function]
2024-06-05T15:58:09,588     470 | static int fio_read_int32(fio_fd fd, int *i) {
2024-06-05T15:58:09,588         |            ^~~~~~~~~~~~~~
2024-06-05T15:58:09,588   moleculekit/fileformats/dcd/include/fastio.h:466:12: warning: ‘fio_write_int32’ defined but not used [-Wunused-function]
2024-06-05T15:58:09,588     466 | static int fio_write_int32(fio_fd fd, int i) {
2024-06-05T15:58:09,588         |            ^~~~~~~~~~~~~~~
2024-06-05T15:58:09,589   moleculekit/fileformats/dcd/include/fastio.h:457:19: warning: ‘fio_ftell’ defined but not used [-Wunused-function]
2024-06-05T15:58:09,589     457 | static fio_size_t fio_ftell(fio_fd fd) {
2024-06-05T15:58:09,589         |                   ^~~~~~~~~
2024-06-05T15:58:09,589   moleculekit/fileformats/dcd/include/fastio.h:450:19: warning: ‘fio_fseek’ defined but not used [-Wunused-function]
2024-06-05T15:58:09,589     450 | static fio_size_t fio_fseek(fio_fd fd, fio_size_t offset, int whence) {
2024-06-05T15:58:09,589         |                   ^~~~~~~~~
2024-06-05T15:58:09,589   moleculekit/fileformats/dcd/include/fastio.h:415:19: warning: ‘fio_readv’ defined but not used [-Wunused-function]
2024-06-05T15:58:09,589     415 | static fio_size_t fio_readv(fio_fd fd, const fio_iovec * iov, int iovcnt) {
2024-06-05T15:58:09,590         |                   ^~~~~~~~~
2024-06-05T15:58:09,590   moleculekit/fileformats/dcd/include/fastio.h:394:12: warning: ‘fio_fclose’ defined but not used [-Wunused-function]
2024-06-05T15:58:09,590     394 | static int fio_fclose(fio_fd fd) {
2024-06-05T15:58:09,590         |            ^~~~~~~~~~
2024-06-05T15:58:09,590   moleculekit/fileformats/dcd/include/fastio.h:366:12: warning: ‘fio_open’ defined but not used [-Wunused-function]
2024-06-05T15:58:09,590     366 | static int fio_open(const char *filename, int mode, fio_fd *fd) {
2024-06-05T15:58:09,590         |            ^~~~~~~~
2024-06-05T15:58:22,189   moleculekit/fileformats/dcd/dcd.c: In function ‘__pyx_pf_11moleculekit_3dcd_17DCDTrajectoryFile_18read’:
2024-06-05T15:58:22,189   moleculekit/fileformats/dcd/dcd.c:1158:40: warning: ‘__pyx_v_i’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2024-06-05T15:58:22,189    1158 |   #define PyInt_FromLong               PyLong_FromLong
2024-06-05T15:58:22,189         |                                        ^~~~~~~~~~~~~~~
2024-06-05T15:58:22,193   moleculekit/fileformats/dcd/dcd.c:8022:7: note: ‘__pyx_v_i’ was declared here
2024-06-05T15:58:22,193    8022 |   int __pyx_v_i;
2024-06-05T15:58:22,194         |       ^~~~~~~~~
2024-06-05T15:58:25,509   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/fileformats/dcd -Imoleculekit/fileformats/dcd/include/ -Imoleculekit/fileformats/dcd/ -I/tmp/pip-build-env-__t4ei7e/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/fileformats/dcd/src/dcdplugin.c -o build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/dcd/src/dcdplugin.o
2024-06-05T15:58:25,694   moleculekit/fileformats/dcd/src/dcdplugin.c: In function ‘read_dcdheader’:
2024-06-05T15:58:25,694   moleculekit/fileformats/dcd/src/dcdplugin.c:150:55: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-06-05T15:58:25,694     150 |   else if (input_integer[0] == 84 && input_integer[1] == dcdcordmagic)
2024-06-05T15:58:25,695         |                                                       ^~
2024-06-05T15:58:25,695   moleculekit/fileformats/dcd/src/dcdplugin.c:173:54: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-06-05T15:58:25,695     173 |       if (input_integer[0] == 84 && input_integer[1] == dcdcordmagic)
2024-06-05T15:58:25,695         |                                                      ^~
2024-06-05T15:58:25,695   moleculekit/fileformats/dcd/src/dcdplugin.c:194:26: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-06-05T15:58:25,695     194 |     if (input_integer[0] != dcdcordmagic)
2024-06-05T15:58:25,695         |                          ^~
2024-06-05T15:58:25,698   moleculekit/fileformats/dcd/src/dcdplugin.c:409:47: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-06-05T15:58:25,699     409 |     if ((input_integer[0] + input_integer[1]) != ((*N) - (*NAMNF)) * 4)
2024-06-05T15:58:25,699         |                                               ^~
2024-06-05T15:58:25,699   moleculekit/fileformats/dcd/src/dcdplugin.c:428:47: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-06-05T15:58:25,699     428 |     if ((input_integer[0] + input_integer[1]) != ((*N) - (*NAMNF)) * 4)
2024-06-05T15:58:25,699         |                                               ^~
2024-06-05T15:58:25,703   moleculekit/fileformats/dcd/src/dcdplugin.c: In function ‘read_dcdstep’:
2024-06-05T15:58:25,703   moleculekit/fileformats/dcd/src/dcdplugin.c:651:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-06-05T15:58:25,703     651 |         if (tmpbuf[i] != sizeof(float) * N)
2024-06-05T15:58:25,703         |                       ^~
2024-06-05T15:58:25,703   moleculekit/fileformats/dcd/src/dcdplugin.c:659:49: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-06-05T15:58:25,704     659 |         if ((tmpbuf[2 * i] + tmpbuf[2 * i + 1]) != sizeof(float) * N)
2024-06-05T15:58:25,704         |                                                 ^~
2024-06-05T15:58:25,726   In file included from moleculekit/fileformats/dcd/src/dcdplugin.c:55:
2024-06-05T15:58:25,727   At top level:
2024-06-05T15:58:25,727   moleculekit/fileformats/dcd/include/endianswap.h:96:13: warning: ‘swap2_aligned’ defined but not used [-Wunused-function]
2024-06-05T15:58:25,727      96 | static void swap2_aligned(void *v, long ndata) {
2024-06-05T15:58:25,727         |             ^~~~~~~~~~~~~
2024-06-05T15:58:25,727   moleculekit/fileformats/dcd/include/endianswap.h:32:13: warning: ‘swap2_unaligned’ defined but not used [-Wunused-function]
2024-06-05T15:58:25,727      32 | static void swap2_unaligned(void *v, long ndata) {
2024-06-05T15:58:25,727         |             ^~~~~~~~~~~~~~~
2024-06-05T15:58:25,728   In file included from moleculekit/fileformats/dcd/src/dcdplugin.c:46:
2024-06-05T15:58:25,728   moleculekit/fileformats/dcd/include/fastio.h:474:12: warning: ‘fio_write_str’ defined but not used [-Wunused-function]
2024-06-05T15:58:25,728     474 | static int fio_write_str(fio_fd fd, const char *str) {
2024-06-05T15:58:25,728         |            ^~~~~~~~~~~~~
2024-06-05T15:58:25,728   moleculekit/fileformats/dcd/include/fastio.h:470:12: warning: ‘fio_read_int32’ defined but not used [-Wunused-function]
2024-06-05T15:58:25,728     470 | static int fio_read_int32(fio_fd fd, int *i) {
2024-06-05T15:58:25,728         |            ^~~~~~~~~~~~~~
2024-06-05T15:58:26,837   arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/dcd/dcd.o build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/dcd/src/dcdplugin.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/dcd.cpython-39-arm-linux-gnueabihf.so
2024-06-05T15:58:27,013   building 'moleculekit.binpos' extension
2024-06-05T15:58:27,013   creating build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/binpos
2024-06-05T15:58:27,014   creating build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/binpos/src
2024-06-05T15:58:27,015   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/fileformats/binpos -Imoleculekit/fileformats/binpos/include/ -Imoleculekit/fileformats/binpos/ -I/tmp/pip-build-env-__t4ei7e/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/fileformats/binpos/binpos.c -o build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/binpos/binpos.o
2024-06-05T15:58:27,333   In file included from /tmp/pip-build-env-__t4ei7e/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2024-06-05T15:58:27,333                    from /tmp/pip-build-env-__t4ei7e/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2024-06-05T15:58:27,333                    from /tmp/pip-build-env-__t4ei7e/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5,
2024-06-05T15:58:27,333                    from moleculekit/fileformats/binpos/binpos.c:1256:
2024-06-05T15:58:27,333   /tmp/pip-build-env-__t4ei7e/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2024-06-05T15:58:27,334      17 | #warning "Using deprecated NumPy API, disable it with " \
2024-06-05T15:58:27,334         |  ^~~~~~~
2024-06-05T15:58:40,806   moleculekit/fileformats/binpos/binpos.c: In function ‘__pyx_pw_11moleculekit_6binpos_20BINPOSTrajectoryFile_7_read’:
2024-06-05T15:58:40,810   moleculekit/fileformats/binpos/binpos.c:8045:6: warning: ‘__pyx_v_status’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2024-06-05T15:58:40,810    8045 |   if (__pyx_t_1) {
2024-06-05T15:58:40,810         |      ^
2024-06-05T15:58:40,814   moleculekit/fileformats/binpos/binpos.c:7522:7: note: ‘__pyx_v_status’ was declared here
2024-06-05T15:58:40,814    7522 |   int __pyx_v_status;
2024-06-05T15:58:40,815         |       ^~~~~~~~~~~~~~
2024-06-05T15:58:40,815   moleculekit/fileformats/binpos/binpos.c:1158:40: warning: ‘__pyx_v_i’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2024-06-05T15:58:40,815    1158 |   #define PyInt_FromLong               PyLong_FromLong
2024-06-05T15:58:40,815         |                                        ^~~~~~~~~~~~~~~
2024-06-05T15:58:40,819   moleculekit/fileformats/binpos/binpos.c:7519:7: note: ‘__pyx_v_i’ was declared here
2024-06-05T15:58:40,819    7519 |   int __pyx_v_i;
2024-06-05T15:58:40,820         |       ^~~~~~~~~
2024-06-05T15:58:43,116   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/fileformats/binpos -Imoleculekit/fileformats/binpos/include/ -Imoleculekit/fileformats/binpos/ -I/tmp/pip-build-env-__t4ei7e/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/fileformats/binpos/src/binposplugin.c -o build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/binpos/src/binposplugin.o
2024-06-05T15:58:43,414   arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/binpos/binpos.o build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/binpos/src/binposplugin.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/binpos.cpython-39-arm-linux-gnueabihf.so
2024-06-05T15:58:43,553   building 'moleculekit.tmalign' extension
2024-06-05T15:58:43,554   creating build/temp.linux-armv7l-cpython-39/moleculekit/tmalign
2024-06-05T15:58:43,555   creating build/temp.linux-armv7l-cpython-39/moleculekit/tmalign/src
2024-06-05T15:58:43,556   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/tmalign -Imoleculekit/tmalign/include/ -Imoleculekit/tmalign/ -I/tmp/pip-build-env-__t4ei7e/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/tmalign/src/TMAlign.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/tmalign/src/TMAlign.o -w
2024-06-05T15:59:13,257   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/tmalign -Imoleculekit/tmalign/include/ -Imoleculekit/tmalign/ -I/tmp/pip-build-env-__t4ei7e/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/tmalign/tmalign_util.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/tmalign/tmalign_util.o -w
2024-06-05T15:59:31,783   In file included from /usr/include/c++/10/vector:72,
2024-06-05T15:59:31,783                    from moleculekit/tmalign/tmalign_util.cpp:1280:
2024-06-05T15:59:31,783   /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator<double>]’:
2024-06-05T15:59:31,784   /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<double>::iterator’ changed in GCC 7.1
2024-06-05T15:59:31,784     426 |       vector<_Tp, _Alloc>::
2024-06-05T15:59:31,784         |       ^~~~~~~~~~~~~~~~~~~
2024-06-05T15:59:32,362   In file included from /usr/include/c++/10/vector:67,
2024-06-05T15:59:32,363                    from moleculekit/tmalign/tmalign_util.cpp:1280:
2024-06-05T15:59:32,363   /usr/include/c++/10/bits/stl_vector.h: In function ‘PyObject* __pyx_pw_11moleculekit_7tmalign_1tmalign(PyObject*, PyObject* const*, Py_ssize_t, PyObject*)’:
2024-06-05T15:59:32,363   /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
2024-06-05T15:59:32,363    1198 |    _M_realloc_insert(end(), __x);
2024-06-05T15:59:32,363         |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2024-06-05T15:59:32,364   /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
2024-06-05T15:59:32,364    1198 |    _M_realloc_insert(end(), __x);
2024-06-05T15:59:32,364         |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2024-06-05T15:59:32,364   /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
2024-06-05T15:59:32,365    1198 |    _M_realloc_insert(end(), __x);
2024-06-05T15:59:32,365         |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2024-06-05T15:59:34,836   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/tmalign/src/TMAlign.o build/temp.linux-armv7l-cpython-39/moleculekit/tmalign/tmalign_util.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/tmalign.cpython-39-arm-linux-gnueabihf.so
2024-06-05T15:59:35,316   UPDATING build/lib.linux-armv7l-cpython-39/moleculekit/_version.py
2024-06-05T15:59:35,316   set build/lib.linux-armv7l-cpython-39/moleculekit/_version.py to '1.8.33'
2024-06-05T15:59:35,316   installing to build/bdist.linux-armv7l/wheel
2024-06-05T15:59:35,316   running install
2024-06-05T15:59:35,343   running install_lib
2024-06-05T15:59:35,350   creating build/bdist.linux-armv7l
2024-06-05T15:59:35,351   creating build/bdist.linux-armv7l/wheel
2024-06-05T15:59:35,353   creating build/bdist.linux-armv7l/wheel/moleculekit
2024-06-05T15:59:35,355   creating build/bdist.linux-armv7l/wheel/moleculekit/atomselect_utils
2024-06-05T15:59:35,356   copying build/lib.linux-armv7l-cpython-39/moleculekit/atomselect_utils/atomselect_utils.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/atomselect_utils
2024-06-05T15:59:35,390   copying build/lib.linux-armv7l-cpython-39/moleculekit/atomselect_utils/atomselect_utils.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/atomselect_utils
2024-06-05T15:59:35,393   creating build/bdist.linux-armv7l/wheel/moleculekit/cython_utils
2024-06-05T15:59:35,395   copying build/lib.linux-armv7l-cpython-39/moleculekit/cython_utils/cython_utils.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/cython_utils
2024-06-05T15:59:35,397   copying build/lib.linux-armv7l-cpython-39/moleculekit/cython_utils/cython_utils.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/cython_utils
2024-06-05T15:59:35,425   creating build/bdist.linux-armv7l/wheel/moleculekit/share
2024-06-05T15:59:35,427   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/backbone.cif -> build/bdist.linux-armv7l/wheel/moleculekit/share
2024-06-05T15:59:35,429   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/opm_sequences.json -> build/bdist.linux-armv7l/wheel/moleculekit/share
2024-06-05T15:59:35,697   creating build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr
2024-06-05T15:59:35,701   creating build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-05T15:59:35,702   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MEA.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-05T15:59:35,703   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/TPO.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-05T15:59:35,705   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/5JP.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-05T15:59:35,707   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MLY.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-05T15:59:35,709   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/4PH.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-05T15:59:35,711   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/FGL.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-05T15:59:35,713   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/4PQ.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-05T15:59:35,715   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/LYZ.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-05T15:59:35,716   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MEN.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-05T15:59:35,718   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HHK.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-05T15:59:35,721   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HLU.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-05T15:59:35,723   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/NVA.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-05T15:59:35,725   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MME.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-05T15:59:35,727   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HTR.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-05T15:59:35,729   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/0BN.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-05T15:59:35,730   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/IML.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-05T15:59:35,732   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HTR.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-05T15:59:35,734   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/GNC.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-05T15:59:35,737   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MEN.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-05T15:59:35,738   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/LME.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-05T15:59:35,740   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/1MH.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-05T15:59:35,742   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/LME.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-05T15:59:35,744   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ALN.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-05T15:59:35,746   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ESC.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-05T15:59:35,748   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CSS.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-05T15:59:35,750   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/YCM.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-05T15:59:35,752   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/YCM.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-05T15:59:35,753   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/2AS.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-05T15:59:35,755   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HQA.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-05T15:59:35,757   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/BCS.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-05T15:59:35,759   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/2MR.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-05T15:59:35,761   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/BB8.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-05T15:59:35,763   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HYP.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-05T15:59:35,765   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/LMQ.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-05T15:59:35,766   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/M3L.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-05T15:59:35,768   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/.gitkeep -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-05T15:59:35,770   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/GME.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-05T15:59:35,771   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/004.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-05T15:59:35,773   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/0AF.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
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2024-06-05T15:59:35,779   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/DAH.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-05T15:59:35,781   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/IGL.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
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2024-06-05T15:59:35,784   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/DAB.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-05T15:59:35,786   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/YNM.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
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2024-06-05T15:59:35,793   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ORM.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
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2024-06-05T15:59:35,801   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/YNM.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
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2024-06-05T15:59:35,805   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/AHP.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-05T15:59:35,806   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CSP.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-05T15:59:35,808   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/TY2.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-05T15:59:35,810   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ALY.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
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2024-06-05T15:59:35,816   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/SEP.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-05T15:59:35,817   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/NVA.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
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2024-06-05T15:59:35,821   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/NAL.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
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2024-06-05T15:59:35,825   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MLE.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-05T15:59:35,826   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CSO.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
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2024-06-05T15:59:35,830   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/TYQ.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-05T15:59:35,833   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HLU.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-05T15:59:35,835   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/PTR.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-05T15:59:35,836   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/APD.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-05T15:59:35,838   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/KYN.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-05T15:59:35,840   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CSA.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-05T15:59:35,842   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/TRO.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-05T15:59:35,844   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HPE.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-05T15:59:35,846   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/2MR.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-05T15:59:35,848   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HQA.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
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2024-06-05T15:59:35,852   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MME.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
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2024-06-05T15:59:35,855   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/AHP.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-05T15:59:35,857   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/OCY.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-05T15:59:35,859   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MEA.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-05T15:59:35,861   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/D4P.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-05T15:59:35,863   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/DAH.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-05T15:59:35,864   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ONL.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-05T15:59:35,866   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HOX.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-05T15:59:35,868   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HLX.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-05T15:59:35,869   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/4PQ.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-05T15:59:35,871   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CCS.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-05T15:59:35,873   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/IGL.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-05T15:59:35,875   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/TPO.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-05T15:59:35,876   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/PCA.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-05T15:59:35,878   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/4PH.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-05T15:59:35,880   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CGU.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-05T15:59:35,881   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MMO.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-05T15:59:35,883   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/IIL.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-05T15:59:35,885   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ALC.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-05T15:59:35,887   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/0A1.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-05T15:59:35,888   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/DA2.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-05T15:59:35,890   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ALN.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-05T15:59:35,892   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/03Y.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-05T15:59:35,894   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/D4P.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-05T15:59:35,896   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ME0.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-05T15:59:35,897   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MMO.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-05T15:59:35,899   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/P1L.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-05T15:59:35,901   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/2GX.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-05T15:59:35,903   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/TYQ.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-05T15:59:35,905   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/DA2.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-05T15:59:35,906   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/PCA.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-05T15:59:35,908   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/SEP.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-05T15:59:35,910   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MVA.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-05T15:59:35,912   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/TRO.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-05T15:59:35,913   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HHK.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-05T15:59:35,915   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/2AS.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-05T15:59:35,917   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/GNC.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-05T15:59:35,918   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ORM.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-05T15:59:35,920   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/KYN.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-05T15:59:35,922   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/DAB.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-05T15:59:35,923   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/APD.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-05T15:59:35,925   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/I2M.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-05T15:59:35,926   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/BTK.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-05T15:59:35,928   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/PRK.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-05T15:59:35,931   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/LYZ.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-05T15:59:35,933   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HLX.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-05T15:59:35,934   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/AA4.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-05T15:59:35,936   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/AA4.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-05T15:59:35,938   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ONL.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-05T15:59:35,940   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/1MH.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-05T15:59:35,942   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/BCS.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-05T15:59:35,944   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/BTK.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-05T15:59:35,945   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HYP.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-05T15:59:35,947   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ESC.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-05T15:59:35,949   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/2ML.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-05T15:59:35,950   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/IML.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-05T15:59:35,952   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/NLE.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-05T15:59:35,954   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CSP.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-05T15:59:35,956   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/0AF.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-05T15:59:35,957   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MEQ.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-05T15:59:35,959   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CGU.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-05T15:59:35,961   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/OCY.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-05T15:59:35,962   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/OMX.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-05T15:59:35,964   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/4IN.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-05T15:59:35,966   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CSS.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-05T15:59:35,968   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MVA.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-05T15:59:35,969   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/M3L.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-05T15:59:35,972   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/GHG.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-05T15:59:35,974   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/NAL.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-05T15:59:35,975   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MLE.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-05T15:59:35,977   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/03Y.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-05T15:59:35,979   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ALC.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-05T15:59:35,980   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ABA.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-05T15:59:35,982   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/NCY.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-05T15:59:35,984   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/GME.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-05T15:59:35,986   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/DPP.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-05T15:59:35,987   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/NZC.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-05T15:59:35,989   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/GHG.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-05T15:59:35,991   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ABA.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-05T15:59:35,992   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ME0.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-05T15:59:35,994   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/IIL.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-05T15:59:35,996   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/0BN.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-05T15:59:35,998   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MLY.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-05T15:59:36,000   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/NLE.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-05T15:59:36,002   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/PTR.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-05T15:59:36,004   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MLZ.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-05T15:59:36,006   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/FGL.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-05T15:59:36,008   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HPE.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-05T15:59:36,009   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MEQ.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-05T15:59:36,011   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/004.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-05T15:59:36,013   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CSA.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-05T15:59:36,015   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HOX.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-05T15:59:36,018   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/NZC.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-05T15:59:36,020   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/LMQ.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-05T15:59:36,022   creating build/bdist.linux-armv7l/wheel/moleculekit/share/atomselect
2024-06-05T15:59:36,023   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/atomselect/atomselect.json -> build/bdist.linux-armv7l/wheel/moleculekit/share/atomselect
2024-06-05T15:59:36,026   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/ALA.cif -> build/bdist.linux-armv7l/wheel/moleculekit/share
2024-06-05T15:59:36,028   copying build/lib.linux-armv7l-cpython-39/moleculekit/periodictable.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-06-05T15:59:36,032   creating build/bdist.linux-armv7l/wheel/moleculekit/bondguesser_utils
2024-06-05T15:59:36,033   copying build/lib.linux-armv7l-cpython-39/moleculekit/bondguesser_utils/bondguesser_utils.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/bondguesser_utils
2024-06-05T15:59:36,035   copying build/lib.linux-armv7l-cpython-39/moleculekit/bondguesser_utils/bondguesser_utils.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/bondguesser_utils
2024-06-05T15:59:36,065   creating build/bdist.linux-armv7l/wheel/moleculekit/distance_utils
2024-06-05T15:59:36,066   copying build/lib.linux-armv7l-cpython-39/moleculekit/distance_utils/distance_utils.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/distance_utils
2024-06-05T15:59:36,111   copying build/lib.linux-armv7l-cpython-39/moleculekit/distance_utils/distance_utils.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/distance_utils
2024-06-05T15:59:36,114   copying build/lib.linux-armv7l-cpython-39/moleculekit/opm.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-06-05T15:59:36,117   creating build/bdist.linux-armv7l/wheel/moleculekit/fileformats
2024-06-05T15:59:36,119   creating build/bdist.linux-armv7l/wheel/moleculekit/fileformats/binpos
2024-06-05T15:59:36,120   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/binpos/binpos.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/binpos
2024-06-05T15:59:36,123   creating build/bdist.linux-armv7l/wheel/moleculekit/fileformats/binpos/src
2024-06-05T15:59:36,124   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/binpos/src/binposplugin.c -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/binpos/src
2024-06-05T15:59:36,127   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/binpos/binposlib.pxd -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/binpos
2024-06-05T15:59:36,129   creating build/bdist.linux-armv7l/wheel/moleculekit/fileformats/binpos/include
2024-06-05T15:59:36,131   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/binpos/include/binposplugin.h -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/binpos/include
2024-06-05T15:59:36,133   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/binpos/include/largefiles.h -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/binpos/include
2024-06-05T15:59:36,135   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/binpos/include/molfile_plugin.h -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/binpos/include
2024-06-05T15:59:36,138   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/binpos/binpos.c -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/binpos
2024-06-05T15:59:36,158   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/netcdf.py -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats
2024-06-05T15:59:36,162   creating build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc
2024-06-05T15:59:36,163   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/trr.c -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc
2024-06-05T15:59:36,190   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/xtclib.pxd -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc
2024-06-05T15:59:36,192   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/trrlib.pxd -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc
2024-06-05T15:59:36,194   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/xtc.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc
2024-06-05T15:59:36,195   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/xdrlib.pxd -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc
2024-06-05T15:59:36,197   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/xtc.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc
2024-06-05T15:59:36,221   creating build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc/src
2024-06-05T15:59:36,222   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/src/xtc.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc/src
2024-06-05T15:59:36,225   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/src/xdrfile.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc/src
2024-06-05T15:59:36,228   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/src/xdrfile_xtc.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc/src
2024-06-05T15:59:36,230   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/src/xdrfile_trr.c -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc/src
2024-06-05T15:59:36,232   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/src/xdr_seek.c -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc/src
2024-06-05T15:59:36,234   creating build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc/include
2024-06-05T15:59:36,235   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/include/xdrfile_trr.h -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc/include
2024-06-05T15:59:36,237   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/include/xdr_seek.h -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc/include
2024-06-05T15:59:36,239   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/include/trr_header.h -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc/include
2024-06-05T15:59:36,241   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/include/xtc.h -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc/include
2024-06-05T15:59:36,242   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/include/xdrfile_xtc.h -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc/include
2024-06-05T15:59:36,244   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/include/xdrfile.h -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc/include
2024-06-05T15:59:36,247   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/trr.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc
2024-06-05T15:59:36,250   creating build/bdist.linux-armv7l/wheel/moleculekit/fileformats/dcd
2024-06-05T15:59:36,251   creating build/bdist.linux-armv7l/wheel/moleculekit/fileformats/dcd/src
2024-06-05T15:59:36,252   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/dcd/src/dcdplugin.c -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/dcd/src
2024-06-05T15:59:36,256   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/dcd/dcdlib.pxd -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/dcd
2024-06-05T15:59:36,257   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/dcd/dcd.c -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/dcd
2024-06-05T15:59:36,276   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/dcd/dcd.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/dcd
2024-06-05T15:59:36,279   creating build/bdist.linux-armv7l/wheel/moleculekit/fileformats/dcd/include
2024-06-05T15:59:36,280   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/dcd/include/largefiles.h -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/dcd/include
2024-06-05T15:59:36,282   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/dcd/include/endianswap.h -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/dcd/include
2024-06-05T15:59:36,284   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/dcd/include/dcdplugin.h -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/dcd/include
2024-06-05T15:59:36,286   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/dcd/include/molfile_plugin.h -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/dcd/include
2024-06-05T15:59:36,288   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/dcd/include/fastio.h -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/dcd/include
2024-06-05T15:59:36,291   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/utils.py -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats
2024-06-05T15:59:36,293   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats
2024-06-05T15:59:36,295   creating build/bdist.linux-armv7l/wheel/moleculekit/tmalign
2024-06-05T15:59:36,296   creating build/bdist.linux-armv7l/wheel/moleculekit/tmalign/src
2024-06-05T15:59:36,297   copying build/lib.linux-armv7l-cpython-39/moleculekit/tmalign/src/TMAlign.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/tmalign/src
2024-06-05T15:59:36,303   copying build/lib.linux-armv7l-cpython-39/moleculekit/tmalign/tmalign_util.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/tmalign
2024-06-05T15:59:36,305   copying build/lib.linux-armv7l-cpython-39/moleculekit/tmalign/tmalign_util.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/tmalign
2024-06-05T15:59:36,335   creating build/bdist.linux-armv7l/wheel/moleculekit/tmalign/include
2024-06-05T15:59:36,335   copying build/lib.linux-armv7l-cpython-39/moleculekit/tmalign/include/TMAlign.h -> build/bdist.linux-armv7l/wheel/moleculekit/tmalign/include
2024-06-05T15:59:36,337   copying build/lib.linux-armv7l-cpython-39/moleculekit/tmalign/tmalignlib.pxd -> build/bdist.linux-armv7l/wheel/moleculekit/tmalign
2024-06-05T15:59:36,339   copying build/lib.linux-armv7l-cpython-39/moleculekit/readers.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-06-05T15:59:36,345   creating build/bdist.linux-armv7l/wheel/moleculekit/occupancy_utils
2024-06-05T15:59:36,345   copying build/lib.linux-armv7l-cpython-39/moleculekit/occupancy_utils/occupancy_utils.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/occupancy_utils
2024-06-05T15:59:36,347   copying build/lib.linux-armv7l-cpython-39/moleculekit/occupancy_utils/occupancy_utils.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/occupancy_utils
2024-06-05T15:59:36,371   copying build/lib.linux-armv7l-cpython-39/moleculekit/bondguesser.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-06-05T15:59:36,374   creating build/bdist.linux-armv7l/wheel/moleculekit/projections
2024-06-05T15:59:36,375   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/projection.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2024-06-05T15:59:36,377   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metricsasa.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2024-06-05T15:59:36,379   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metrictmscore.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2024-06-05T15:59:36,381   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metricshell.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2024-06-05T15:59:36,384   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metriccoordinate.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2024-06-05T15:59:36,386   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metricrmsd.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2024-06-05T15:59:36,389   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metricplumed2.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2024-06-05T15:59:36,391   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metricgyration.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2024-06-05T15:59:36,394   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2024-06-05T15:59:36,395   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metricdihedral.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2024-06-05T15:59:36,398   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/util.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2024-06-05T15:59:36,400   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metricsecondarystructure.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2024-06-05T15:59:36,402   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metricfluctuation.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2024-06-05T15:59:36,405   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metricdistance.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2024-06-05T15:59:36,408   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metricsphericalcoordinate.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2024-06-05T15:59:36,411   copying build/lib.linux-armv7l-cpython-39/moleculekit/wrapping.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2024-06-05T15:59:36,442   copying build/lib.linux-armv7l-cpython-39/moleculekit/viewer.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-06-05T15:59:36,444   copying build/lib.linux-armv7l-cpython-39/moleculekit/binpos.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2024-06-05T15:59:36,462   copying build/lib.linux-armv7l-cpython-39/moleculekit/dihedral.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-06-05T15:59:36,464   copying build/lib.linux-armv7l-cpython-39/moleculekit/logging.ini -> build/bdist.linux-armv7l/wheel/moleculekit
2024-06-05T15:59:36,466   copying build/lib.linux-armv7l-cpython-39/moleculekit/tmalign.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2024-06-05T15:59:36,560   copying build/lib.linux-armv7l-cpython-39/moleculekit/vmdgraphics.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-06-05T15:59:36,562   copying build/lib.linux-armv7l-cpython-39/moleculekit/config.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-06-05T15:59:36,565   copying build/lib.linux-armv7l-cpython-39/moleculekit/cython_utils.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2024-06-05T15:59:36,591   copying build/lib.linux-armv7l-cpython-39/moleculekit/distance.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-06-05T15:59:36,594   creating build/bdist.linux-armv7l/wheel/moleculekit/tools
2024-06-05T15:59:36,595   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/voxeldescriptors.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2024-06-05T15:59:36,598   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/sequencestructuralalignment.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2024-06-05T15:59:36,600   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/docking.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2024-06-05T15:59:36,602   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/modelling.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2024-06-05T15:59:36,604   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/moleculechecks.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2024-06-05T15:59:36,606   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/autosegment.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2024-06-05T15:59:36,608   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/atomtyper.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2024-06-05T15:59:36,611   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/preparation_customres.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2024-06-05T15:59:36,613   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/graphalignment.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2024-06-05T15:59:36,615   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/detect.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2024-06-05T15:59:36,618   creating build/bdist.linux-armv7l/wheel/moleculekit/tools/obabel_tools
2024-06-05T15:59:36,619   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/obabel_tools/obabel_cli.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools/obabel_tools
2024-06-05T15:59:36,621   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/obabel_tools/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools/obabel_tools
2024-06-05T15:59:36,623   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/preparation.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2024-06-05T15:59:36,626   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/crystalpacking.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2024-06-05T15:59:36,628   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2024-06-05T15:59:36,630   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/hhblitsprofile.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2024-06-05T15:59:36,632   copying build/lib.linux-armv7l-cpython-39/moleculekit/writers.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-06-05T15:59:36,635   creating build/bdist.linux-armv7l/wheel/moleculekit/atomselect
2024-06-05T15:59:36,636   copying build/lib.linux-armv7l-cpython-39/moleculekit/atomselect/analyze.py -> build/bdist.linux-armv7l/wheel/moleculekit/atomselect
2024-06-05T15:59:36,638   copying build/lib.linux-armv7l-cpython-39/moleculekit/atomselect/atomselect.py -> build/bdist.linux-armv7l/wheel/moleculekit/atomselect
2024-06-05T15:59:36,641   copying build/lib.linux-armv7l-cpython-39/moleculekit/atomselect/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/atomselect
2024-06-05T15:59:36,642   copying build/lib.linux-armv7l-cpython-39/moleculekit/atomselect/languageparser.py -> build/bdist.linux-armv7l/wheel/moleculekit/atomselect
2024-06-05T15:59:36,644   copying build/lib.linux-armv7l-cpython-39/moleculekit/home.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-06-05T15:59:36,646   copying build/lib.linux-armv7l-cpython-39/moleculekit/trr.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2024-06-05T15:59:36,682   copying build/lib.linux-armv7l-cpython-39/moleculekit/rdkitintegration.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-06-05T15:59:36,684   copying build/lib.linux-armv7l-cpython-39/moleculekit/_version.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-06-05T15:59:36,686   copying build/lib.linux-armv7l-cpython-39/moleculekit/dcd.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2024-06-05T15:59:36,701   copying build/lib.linux-armv7l-cpython-39/moleculekit/version.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-06-05T15:59:36,703   creating build/bdist.linux-armv7l/wheel/moleculekit/ply
2024-06-05T15:59:36,704   copying build/lib.linux-armv7l-cpython-39/moleculekit/ply/yacc.py -> build/bdist.linux-armv7l/wheel/moleculekit/ply
2024-06-05T15:59:36,709   copying build/lib.linux-armv7l-cpython-39/moleculekit/ply/lex.py -> build/bdist.linux-armv7l/wheel/moleculekit/ply
2024-06-05T15:59:36,711   copying build/lib.linux-armv7l-cpython-39/moleculekit/ply/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/ply
2024-06-05T15:59:36,713   copying build/lib.linux-armv7l-cpython-39/moleculekit/atomselect_utils.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2024-06-05T15:59:36,746   copying build/lib.linux-armv7l-cpython-39/moleculekit/vmdviewer.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-06-05T15:59:36,748   copying build/lib.linux-armv7l-cpython-39/moleculekit/bondguesser_utils.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2024-06-05T15:59:36,772   creating build/bdist.linux-armv7l/wheel/moleculekit/wrapping
2024-06-05T15:59:36,773   copying build/lib.linux-armv7l-cpython-39/moleculekit/wrapping/wrapping.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/wrapping
2024-06-05T15:59:36,801   copying build/lib.linux-armv7l-cpython-39/moleculekit/wrapping/wrapping.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/wrapping
2024-06-05T15:59:36,804   copying build/lib.linux-armv7l-cpython-39/moleculekit/distance_utils.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2024-06-05T15:59:36,876   copying build/lib.linux-armv7l-cpython-39/moleculekit/rcsb.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-06-05T15:59:36,879   creating build/bdist.linux-armv7l/wheel/moleculekit/interactions
2024-06-05T15:59:36,880   creating build/bdist.linux-armv7l/wheel/moleculekit/interactions/sigmahole
2024-06-05T15:59:36,881   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/sigmahole/sigmahole.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/sigmahole
2024-06-05T15:59:36,884   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/sigmahole/sigmahole.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/sigmahole
2024-06-05T15:59:36,906   creating build/bdist.linux-armv7l/wheel/moleculekit/interactions/cationpi
2024-06-05T15:59:36,907   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/cationpi/cationpi.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/cationpi
2024-06-05T15:59:36,973   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/cationpi/cationpi.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/cationpi
2024-06-05T15:59:36,976   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/interactions.py -> build/bdist.linux-armv7l/wheel/moleculekit/interactions
2024-06-05T15:59:36,979   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/pipi.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit/interactions
2024-06-05T15:59:37,086   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/cationpi.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit/interactions
2024-06-05T15:59:37,129   creating build/bdist.linux-armv7l/wheel/moleculekit/interactions/hbonds
2024-06-05T15:59:37,131   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/hbonds/hbonds.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/hbonds
2024-06-05T15:59:37,134   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/hbonds/hbonds.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/hbonds
2024-06-05T15:59:37,168   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/hbonds.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit/interactions
2024-06-05T15:59:37,200   creating build/bdist.linux-armv7l/wheel/moleculekit/interactions/pipi
2024-06-05T15:59:37,201   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/pipi/pipi.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/pipi
2024-06-05T15:59:37,204   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/pipi/pipi.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/pipi
2024-06-05T15:59:37,225   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/sigmahole.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit/interactions
2024-06-05T15:59:37,257   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/interactions
2024-06-05T15:59:37,259   copying build/lib.linux-armv7l-cpython-39/moleculekit/pymolgraphics.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-06-05T15:59:37,261   copying build/lib.linux-armv7l-cpython-39/moleculekit/molecule.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-06-05T15:59:37,266   copying build/lib.linux-armv7l-cpython-39/moleculekit/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-06-05T15:59:37,268   creating build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2024-06-05T15:59:37,270   copying build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/smallmolcdp.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2024-06-05T15:59:37,272   copying build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/test_smallmollib.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2024-06-05T15:59:37,275   copying build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/test_smallmol.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2024-06-05T15:59:37,278   copying build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/smallmol.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2024-06-05T15:59:37,281   copying build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/smallmollib.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2024-06-05T15:59:37,284   creating build/bdist.linux-armv7l/wheel/moleculekit/smallmol/tools
2024-06-05T15:59:37,285   copying build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/tools/clustering.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol/tools
2024-06-05T15:59:37,288   copying build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/tools/restrainedembed.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol/tools
2024-06-05T15:59:37,290   copying build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/tools/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol/tools
2024-06-05T15:59:37,293   copying build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/tools/test_tools.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol/tools
2024-06-05T15:59:37,295   copying build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2024-06-05T15:59:37,297   copying build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/util.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2024-06-05T15:59:37,300   copying build/lib.linux-armv7l-cpython-39/moleculekit/xtc.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2024-06-05T15:59:37,324   copying build/lib.linux-armv7l-cpython-39/moleculekit/util.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-06-05T15:59:37,327   copying build/lib.linux-armv7l-cpython-39/moleculekit/occupancy_utils.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2024-06-05T15:59:37,349   copying build/lib.linux-armv7l-cpython-39/moleculekit/vmd_wrapper -> build/bdist.linux-armv7l/wheel/moleculekit
2024-06-05T15:59:37,351   creating build/bdist.linux-armv7l/wheel/moleculekit/pdbx
2024-06-05T15:59:37,352   creating build/bdist.linux-armv7l/wheel/moleculekit/pdbx/reader
2024-06-05T15:59:37,353   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/reader/PdbxParser.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/reader
2024-06-05T15:59:37,356   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/reader/PdbxReader.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/reader
2024-06-05T15:59:37,358   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/reader/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/reader
2024-06-05T15:59:37,360   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/reader/PdbxContainers.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/reader
2024-06-05T15:59:37,363   creating build/bdist.linux-armv7l/wheel/moleculekit/pdbx/writer
2024-06-05T15:59:37,364   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/writer/PdbxWriter.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/writer
2024-06-05T15:59:37,366   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/writer/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/writer
2024-06-05T15:59:37,368   creating build/bdist.linux-armv7l/wheel/moleculekit/pdbx/tests
2024-06-05T15:59:37,369   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/tests/PdbxWriterTests.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/tests
2024-06-05T15:59:37,371   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/tests/PdbxReaderTests.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/tests
2024-06-05T15:59:37,373   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/tests/PdbxReadWriteTests.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/tests
2024-06-05T15:59:37,376   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/tests/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/tests
2024-06-05T15:59:37,377   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx
2024-06-05T15:59:37,378   copying build/lib.linux-armv7l-cpython-39/moleculekit/align.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-06-05T15:59:37,380   running install_egg_info
2024-06-05T15:59:37,386   Copying moleculekit.egg-info to build/bdist.linux-armv7l/wheel/moleculekit-1.8.33-py3.9.egg-info
2024-06-05T15:59:37,398   running install_scripts
2024-06-05T15:59:37,447   creating build/bdist.linux-armv7l/wheel/moleculekit-1.8.33.dist-info/WHEEL
2024-06-05T15:59:37,450   creating '/tmp/pip-wheel-u6c7q0cl/.tmp-qd7gi3pp/moleculekit-1.8.33-cp39-cp39-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2024-06-05T15:59:37,453   adding 'moleculekit/__init__.py'
2024-06-05T15:59:37,454   adding 'moleculekit/_version.py'
2024-06-05T15:59:37,456   adding 'moleculekit/align.py'
2024-06-05T15:59:37,810   adding 'moleculekit/atomselect_utils.cpython-39-arm-linux-gnueabihf.so'
2024-06-05T15:59:37,972   adding 'moleculekit/binpos.cpython-39-arm-linux-gnueabihf.so'
2024-06-05T15:59:37,979   adding 'moleculekit/bondguesser.py'
2024-06-05T15:59:38,223   adding 'moleculekit/bondguesser_utils.cpython-39-arm-linux-gnueabihf.so'
2024-06-05T15:59:38,232   adding 'moleculekit/config.py'
2024-06-05T15:59:38,491   adding 'moleculekit/cython_utils.cpython-39-arm-linux-gnueabihf.so'
2024-06-05T15:59:38,664   adding 'moleculekit/dcd.cpython-39-arm-linux-gnueabihf.so'
2024-06-05T15:59:38,670   adding 'moleculekit/dihedral.py'
2024-06-05T15:59:38,672   adding 'moleculekit/distance.py'
2024-06-05T15:59:39,003   adding 'moleculekit/distance_utils.cpython-39-arm-linux-gnueabihf.so'
2024-06-05T15:59:39,015   adding 'moleculekit/home.py'
2024-06-05T15:59:39,016   adding 'moleculekit/logging.ini'
2024-06-05T15:59:39,031   adding 'moleculekit/molecule.py'
2024-06-05T15:59:39,258   adding 'moleculekit/occupancy_utils.cpython-39-arm-linux-gnueabihf.so'
2024-06-05T15:59:39,267   adding 'moleculekit/opm.py'
2024-06-05T15:59:39,269   adding 'moleculekit/periodictable.py'
2024-06-05T15:59:39,270   adding 'moleculekit/pymolgraphics.py'
2024-06-05T15:59:39,272   adding 'moleculekit/rcsb.py'
2024-06-05T15:59:39,273   adding 'moleculekit/rdkitintegration.py'
2024-06-05T15:59:39,286   adding 'moleculekit/readers.py'
2024-06-05T15:59:39,899   adding 'moleculekit/tmalign.cpython-39-arm-linux-gnueabihf.so'
2024-06-05T15:59:40,214   adding 'moleculekit/trr.cpython-39-arm-linux-gnueabihf.so'
2024-06-05T15:59:40,226   adding 'moleculekit/util.py'
2024-06-05T15:59:40,228   adding 'moleculekit/version.py'
2024-06-05T15:59:40,229   adding 'moleculekit/viewer.py'
2024-06-05T15:59:40,231   adding 'moleculekit/vmd_wrapper'
2024-06-05T15:59:40,232   adding 'moleculekit/vmdgraphics.py'
2024-06-05T15:59:40,235   adding 'moleculekit/vmdviewer.py'
2024-06-05T15:59:40,488   adding 'moleculekit/wrapping.cpython-39-arm-linux-gnueabihf.so'
2024-06-05T15:59:40,503   adding 'moleculekit/writers.py'
2024-06-05T15:59:40,772   adding 'moleculekit/xtc.cpython-39-arm-linux-gnueabihf.so'
2024-06-05T15:59:40,782   adding 'moleculekit/atomselect/__init__.py'
2024-06-05T15:59:40,784   adding 'moleculekit/atomselect/analyze.py'
2024-06-05T15:59:40,786   adding 'moleculekit/atomselect/atomselect.py'
2024-06-05T15:59:40,788   adding 'moleculekit/atomselect/languageparser.py'
2024-06-05T15:59:40,892   adding 'moleculekit/atomselect_utils/atomselect_utils.cpp'
2024-06-05T15:59:40,903   adding 'moleculekit/atomselect_utils/atomselect_utils.pyx'
2024-06-05T15:59:40,996   adding 'moleculekit/bondguesser_utils/bondguesser_utils.cpp'
2024-06-05T15:59:41,005   adding 'moleculekit/bondguesser_utils/bondguesser_utils.pyx'
2024-06-05T15:59:41,095   adding 'moleculekit/cython_utils/cython_utils.cpp'
2024-06-05T15:59:41,104   adding 'moleculekit/cython_utils/cython_utils.pyx'
2024-06-05T15:59:41,208   adding 'moleculekit/distance_utils/distance_utils.cpp'
2024-06-05T15:59:41,219   adding 'moleculekit/distance_utils/distance_utils.pyx'
2024-06-05T15:59:41,223   adding 'moleculekit/fileformats/__init__.py'
2024-06-05T15:59:41,228   adding 'moleculekit/fileformats/netcdf.py'
2024-06-05T15:59:41,230   adding 'moleculekit/fileformats/utils.py'
2024-06-05T15:59:41,292   adding 'moleculekit/fileformats/binpos/binpos.c'
2024-06-05T15:59:41,299   adding 'moleculekit/fileformats/binpos/binpos.pyx'
2024-06-05T15:59:41,301   adding 'moleculekit/fileformats/binpos/binposlib.pxd'
2024-06-05T15:59:41,302   adding 'moleculekit/fileformats/binpos/include/binposplugin.h'
2024-06-05T15:59:41,304   adding 'moleculekit/fileformats/binpos/include/largefiles.h'
2024-06-05T15:59:41,309   adding 'moleculekit/fileformats/binpos/include/molfile_plugin.h'
2024-06-05T15:59:41,311   adding 'moleculekit/fileformats/binpos/src/binposplugin.c'
2024-06-05T15:59:41,375   adding 'moleculekit/fileformats/dcd/dcd.c'
2024-06-05T15:59:41,383   adding 'moleculekit/fileformats/dcd/dcd.pyx'
2024-06-05T15:59:41,384   adding 'moleculekit/fileformats/dcd/dcdlib.pxd'
2024-06-05T15:59:41,386   adding 'moleculekit/fileformats/dcd/include/dcdplugin.h'
2024-06-05T15:59:41,387   adding 'moleculekit/fileformats/dcd/include/endianswap.h'
2024-06-05T15:59:41,389   adding 'moleculekit/fileformats/dcd/include/fastio.h'
2024-06-05T15:59:41,391   adding 'moleculekit/fileformats/dcd/include/largefiles.h'
2024-06-05T15:59:41,396   adding 'moleculekit/fileformats/dcd/include/molfile_plugin.h'
2024-06-05T15:59:41,401   adding 'moleculekit/fileformats/dcd/src/dcdplugin.c'
2024-06-05T15:59:41,497   adding 'moleculekit/fileformats/xtc/trr.c'
2024-06-05T15:59:41,509   adding 'moleculekit/fileformats/xtc/trr.pyx'
2024-06-05T15:59:41,510   adding 'moleculekit/fileformats/xtc/trrlib.pxd'
2024-06-05T15:59:41,511   adding 'moleculekit/fileformats/xtc/xdrlib.pxd'
2024-06-05T15:59:41,602   adding 'moleculekit/fileformats/xtc/xtc.cpp'
2024-06-05T15:59:41,611   adding 'moleculekit/fileformats/xtc/xtc.pyx'
2024-06-05T15:59:41,612   adding 'moleculekit/fileformats/xtc/xtclib.pxd'
2024-06-05T15:59:41,614   adding 'moleculekit/fileformats/xtc/include/trr_header.h'
2024-06-05T15:59:41,615   adding 'moleculekit/fileformats/xtc/include/xdr_seek.h'
2024-06-05T15:59:41,618   adding 'moleculekit/fileformats/xtc/include/xdrfile.h'
2024-06-05T15:59:41,619   adding 'moleculekit/fileformats/xtc/include/xdrfile_trr.h'
2024-06-05T15:59:41,620   adding 'moleculekit/fileformats/xtc/include/xdrfile_xtc.h'
2024-06-05T15:59:41,622   adding 'moleculekit/fileformats/xtc/include/xtc.h'
2024-06-05T15:59:41,623   adding 'moleculekit/fileformats/xtc/src/xdr_seek.c'
2024-06-05T15:59:41,630   adding 'moleculekit/fileformats/xtc/src/xdrfile.cpp'
2024-06-05T15:59:41,634   adding 'moleculekit/fileformats/xtc/src/xdrfile_trr.c'
2024-06-05T15:59:41,636   adding 'moleculekit/fileformats/xtc/src/xdrfile_xtc.cpp'
2024-06-05T15:59:41,638   adding 'moleculekit/fileformats/xtc/src/xtc.cpp'
2024-06-05T15:59:41,640   adding 'moleculekit/interactions/__init__.py'
2024-06-05T15:59:41,927   adding 'moleculekit/interactions/cationpi.cpython-39-arm-linux-gnueabihf.so'
2024-06-05T15:59:42,198   adding 'moleculekit/interactions/hbonds.cpython-39-arm-linux-gnueabihf.so'
2024-06-05T15:59:42,210   adding 'moleculekit/interactions/interactions.py'
2024-06-05T15:59:42,494   adding 'moleculekit/interactions/pipi.cpython-39-arm-linux-gnueabihf.so'
2024-06-05T15:59:42,786   adding 'moleculekit/interactions/sigmahole.cpython-39-arm-linux-gnueabihf.so'
2024-06-05T15:59:42,888   adding 'moleculekit/interactions/cationpi/cationpi.cpp'
2024-06-05T15:59:42,897   adding 'moleculekit/interactions/cationpi/cationpi.pyx'
2024-06-05T15:59:42,989   adding 'moleculekit/interactions/hbonds/hbonds.cpp'
2024-06-05T15:59:42,998   adding 'moleculekit/interactions/hbonds/hbonds.pyx'
2024-06-05T15:59:43,091   adding 'moleculekit/interactions/pipi/pipi.cpp'
2024-06-05T15:59:43,100   adding 'moleculekit/interactions/pipi/pipi.pyx'
2024-06-05T15:59:43,193   adding 'moleculekit/interactions/sigmahole/sigmahole.cpp'
2024-06-05T15:59:43,202   adding 'moleculekit/interactions/sigmahole/sigmahole.pyx'
2024-06-05T15:59:43,290   adding 'moleculekit/occupancy_utils/occupancy_utils.cpp'
2024-06-05T15:59:43,298   adding 'moleculekit/occupancy_utils/occupancy_utils.pyx'
2024-06-05T15:59:43,300   adding 'moleculekit/pdbx/__init__.py'
2024-06-05T15:59:43,304   adding 'moleculekit/pdbx/reader/PdbxContainers.py'
2024-06-05T15:59:43,307   adding 'moleculekit/pdbx/reader/PdbxParser.py'
2024-06-05T15:59:43,309   adding 'moleculekit/pdbx/reader/PdbxReader.py'
2024-06-05T15:59:43,310   adding 'moleculekit/pdbx/reader/__init__.py'
2024-06-05T15:59:43,312   adding 'moleculekit/pdbx/tests/PdbxReadWriteTests.py'
2024-06-05T15:59:43,314   adding 'moleculekit/pdbx/tests/PdbxReaderTests.py'
2024-06-05T15:59:43,315   adding 'moleculekit/pdbx/tests/PdbxWriterTests.py'
2024-06-05T15:59:43,316   adding 'moleculekit/pdbx/tests/__init__.py'
2024-06-05T15:59:43,318   adding 'moleculekit/pdbx/writer/PdbxWriter.py'
2024-06-05T15:59:43,319   adding 'moleculekit/pdbx/writer/__init__.py'
2024-06-05T15:59:43,321   adding 'moleculekit/ply/__init__.py'
2024-06-05T15:59:43,325   adding 'moleculekit/ply/lex.py'
2024-06-05T15:59:43,339   adding 'moleculekit/ply/yacc.py'
2024-06-05T15:59:43,341   adding 'moleculekit/projections/__init__.py'
2024-06-05T15:59:43,343   adding 'moleculekit/projections/metriccoordinate.py'
2024-06-05T15:59:43,346   adding 'moleculekit/projections/metricdihedral.py'
2024-06-05T15:59:43,350   adding 'moleculekit/projections/metricdistance.py'
2024-06-05T15:59:43,352   adding 'moleculekit/projections/metricfluctuation.py'
2024-06-05T15:59:43,354   adding 'moleculekit/projections/metricgyration.py'
2024-06-05T15:59:43,358   adding 'moleculekit/projections/metricplumed2.py'
2024-06-05T15:59:43,360   adding 'moleculekit/projections/metricrmsd.py'
2024-06-05T15:59:43,362   adding 'moleculekit/projections/metricsasa.py'
2024-06-05T15:59:43,364   adding 'moleculekit/projections/metricsecondarystructure.py'
2024-06-05T15:59:43,366   adding 'moleculekit/projections/metricshell.py'
2024-06-05T15:59:43,367   adding 'moleculekit/projections/metricsphericalcoordinate.py'
2024-06-05T15:59:43,369   adding 'moleculekit/projections/metrictmscore.py'
2024-06-05T15:59:43,370   adding 'moleculekit/projections/projection.py'
2024-06-05T15:59:43,371   adding 'moleculekit/projections/util.py'
2024-06-05T15:59:43,374   adding 'moleculekit/share/ALA.cif'
2024-06-05T15:59:43,375   adding 'moleculekit/share/backbone.cif'
2024-06-05T15:59:44,679   adding 'moleculekit/share/opm_sequences.json'
2024-06-05T15:59:44,765   adding 'moleculekit/share/atomselect/atomselect.json'
2024-06-05T15:59:44,770   adding 'moleculekit/share/pdb2pqr/residues/.gitkeep'
2024-06-05T15:59:44,771   adding 'moleculekit/share/pdb2pqr/residues/004.dat'
2024-06-05T15:59:44,772   adding 'moleculekit/share/pdb2pqr/residues/004.xml'
2024-06-05T15:59:44,773   adding 'moleculekit/share/pdb2pqr/residues/03Y.dat'
2024-06-05T15:59:44,775   adding 'moleculekit/share/pdb2pqr/residues/03Y.xml'
2024-06-05T15:59:44,776   adding 'moleculekit/share/pdb2pqr/residues/0A1.dat'
2024-06-05T15:59:44,777   adding 'moleculekit/share/pdb2pqr/residues/0A1.xml'
2024-06-05T15:59:44,778   adding 'moleculekit/share/pdb2pqr/residues/0AF.dat'
2024-06-05T15:59:44,780   adding 'moleculekit/share/pdb2pqr/residues/0AF.xml'
2024-06-05T15:59:44,781   adding 'moleculekit/share/pdb2pqr/residues/0BN.dat'
2024-06-05T15:59:44,782   adding 'moleculekit/share/pdb2pqr/residues/0BN.xml'
2024-06-05T15:59:44,783   adding 'moleculekit/share/pdb2pqr/residues/1MH.dat'
2024-06-05T15:59:44,785   adding 'moleculekit/share/pdb2pqr/residues/1MH.xml'
2024-06-05T15:59:44,786   adding 'moleculekit/share/pdb2pqr/residues/2AS.dat'
2024-06-05T15:59:44,787   adding 'moleculekit/share/pdb2pqr/residues/2AS.xml'
2024-06-05T15:59:44,788   adding 'moleculekit/share/pdb2pqr/residues/2GX.dat'
2024-06-05T15:59:44,790   adding 'moleculekit/share/pdb2pqr/residues/2GX.xml'
2024-06-05T15:59:44,791   adding 'moleculekit/share/pdb2pqr/residues/2ML.dat'
2024-06-05T15:59:44,792   adding 'moleculekit/share/pdb2pqr/residues/2ML.xml'
2024-06-05T15:59:44,793   adding 'moleculekit/share/pdb2pqr/residues/2MR.dat'
2024-06-05T15:59:44,795   adding 'moleculekit/share/pdb2pqr/residues/2MR.xml'
2024-06-05T15:59:44,796   adding 'moleculekit/share/pdb2pqr/residues/4IN.dat'
2024-06-05T15:59:44,797   adding 'moleculekit/share/pdb2pqr/residues/4IN.xml'
2024-06-05T15:59:44,798   adding 'moleculekit/share/pdb2pqr/residues/4PH.dat'
2024-06-05T15:59:44,800   adding 'moleculekit/share/pdb2pqr/residues/4PH.xml'
2024-06-05T15:59:44,801   adding 'moleculekit/share/pdb2pqr/residues/4PQ.dat'
2024-06-05T15:59:44,802   adding 'moleculekit/share/pdb2pqr/residues/4PQ.xml'
2024-06-05T15:59:44,803   adding 'moleculekit/share/pdb2pqr/residues/5JP.dat'
2024-06-05T15:59:44,805   adding 'moleculekit/share/pdb2pqr/residues/5JP.xml'
2024-06-05T15:59:44,806   adding 'moleculekit/share/pdb2pqr/residues/AA4.dat'
2024-06-05T15:59:44,807   adding 'moleculekit/share/pdb2pqr/residues/AA4.xml'
2024-06-05T15:59:44,808   adding 'moleculekit/share/pdb2pqr/residues/ABA.dat'
2024-06-05T15:59:44,810   adding 'moleculekit/share/pdb2pqr/residues/ABA.xml'
2024-06-05T15:59:44,811   adding 'moleculekit/share/pdb2pqr/residues/AHP.dat'
2024-06-05T15:59:44,812   adding 'moleculekit/share/pdb2pqr/residues/AHP.xml'
2024-06-05T15:59:44,813   adding 'moleculekit/share/pdb2pqr/residues/ALC.dat'
2024-06-05T15:59:44,815   adding 'moleculekit/share/pdb2pqr/residues/ALC.xml'
2024-06-05T15:59:44,816   adding 'moleculekit/share/pdb2pqr/residues/ALN.dat'
2024-06-05T15:59:44,817   adding 'moleculekit/share/pdb2pqr/residues/ALN.xml'
2024-06-05T15:59:44,818   adding 'moleculekit/share/pdb2pqr/residues/ALY.dat'
2024-06-05T15:59:44,820   adding 'moleculekit/share/pdb2pqr/residues/ALY.xml'
2024-06-05T15:59:44,821   adding 'moleculekit/share/pdb2pqr/residues/APD.dat'
2024-06-05T15:59:44,822   adding 'moleculekit/share/pdb2pqr/residues/APD.xml'
2024-06-05T15:59:44,823   adding 'moleculekit/share/pdb2pqr/residues/BB8.dat'
2024-06-05T15:59:44,825   adding 'moleculekit/share/pdb2pqr/residues/BB8.xml'
2024-06-05T15:59:44,826   adding 'moleculekit/share/pdb2pqr/residues/BCS.dat'
2024-06-05T15:59:44,827   adding 'moleculekit/share/pdb2pqr/residues/BCS.xml'
2024-06-05T15:59:44,828   adding 'moleculekit/share/pdb2pqr/residues/BTK.dat'
2024-06-05T15:59:44,830   adding 'moleculekit/share/pdb2pqr/residues/BTK.xml'
2024-06-05T15:59:44,831   adding 'moleculekit/share/pdb2pqr/residues/CCS.dat'
2024-06-05T15:59:44,832   adding 'moleculekit/share/pdb2pqr/residues/CCS.xml'
2024-06-05T15:59:44,834   adding 'moleculekit/share/pdb2pqr/residues/CGU.dat'
2024-06-05T15:59:44,835   adding 'moleculekit/share/pdb2pqr/residues/CGU.xml'
2024-06-05T15:59:44,836   adding 'moleculekit/share/pdb2pqr/residues/CSA.dat'
2024-06-05T15:59:44,837   adding 'moleculekit/share/pdb2pqr/residues/CSA.xml'
2024-06-05T15:59:44,839   adding 'moleculekit/share/pdb2pqr/residues/CSO.dat'
2024-06-05T15:59:44,840   adding 'moleculekit/share/pdb2pqr/residues/CSO.xml'
2024-06-05T15:59:44,841   adding 'moleculekit/share/pdb2pqr/residues/CSP.dat'
2024-06-05T15:59:44,842   adding 'moleculekit/share/pdb2pqr/residues/CSP.xml'
2024-06-05T15:59:44,843   adding 'moleculekit/share/pdb2pqr/residues/CSS.dat'
2024-06-05T15:59:44,845   adding 'moleculekit/share/pdb2pqr/residues/CSS.xml'
2024-06-05T15:59:44,846   adding 'moleculekit/share/pdb2pqr/residues/D4P.dat'
2024-06-05T15:59:44,847   adding 'moleculekit/share/pdb2pqr/residues/D4P.xml'
2024-06-05T15:59:44,848   adding 'moleculekit/share/pdb2pqr/residues/DA2.dat'
2024-06-05T15:59:44,849   adding 'moleculekit/share/pdb2pqr/residues/DA2.xml'
2024-06-05T15:59:44,851   adding 'moleculekit/share/pdb2pqr/residues/DAB.dat'
2024-06-05T15:59:44,852   adding 'moleculekit/share/pdb2pqr/residues/DAB.xml'
2024-06-05T15:59:44,853   adding 'moleculekit/share/pdb2pqr/residues/DAH.dat'
2024-06-05T15:59:44,854   adding 'moleculekit/share/pdb2pqr/residues/DAH.xml'
2024-06-05T15:59:44,856   adding 'moleculekit/share/pdb2pqr/residues/DPP.dat'
2024-06-05T15:59:44,857   adding 'moleculekit/share/pdb2pqr/residues/DPP.xml'
2024-06-05T15:59:44,858   adding 'moleculekit/share/pdb2pqr/residues/ESC.dat'
2024-06-05T15:59:44,859   adding 'moleculekit/share/pdb2pqr/residues/ESC.xml'
2024-06-05T15:59:44,860   adding 'moleculekit/share/pdb2pqr/residues/FGL.dat'
2024-06-05T15:59:44,861   adding 'moleculekit/share/pdb2pqr/residues/FGL.xml'
2024-06-05T15:59:44,863   adding 'moleculekit/share/pdb2pqr/residues/GHG.dat'
2024-06-05T15:59:44,864   adding 'moleculekit/share/pdb2pqr/residues/GHG.xml'
2024-06-05T15:59:44,865   adding 'moleculekit/share/pdb2pqr/residues/GME.dat'
2024-06-05T15:59:44,866   adding 'moleculekit/share/pdb2pqr/residues/GME.xml'
2024-06-05T15:59:44,868   adding 'moleculekit/share/pdb2pqr/residues/GNC.dat'
2024-06-05T15:59:44,869   adding 'moleculekit/share/pdb2pqr/residues/GNC.xml'
2024-06-05T15:59:44,870   adding 'moleculekit/share/pdb2pqr/residues/HHK.dat'
2024-06-05T15:59:44,871   adding 'moleculekit/share/pdb2pqr/residues/HHK.xml'
2024-06-05T15:59:44,872   adding 'moleculekit/share/pdb2pqr/residues/HLU.dat'
2024-06-05T15:59:44,874   adding 'moleculekit/share/pdb2pqr/residues/HLU.xml'
2024-06-05T15:59:44,875   adding 'moleculekit/share/pdb2pqr/residues/HLX.dat'
2024-06-05T15:59:44,876   adding 'moleculekit/share/pdb2pqr/residues/HLX.xml'
2024-06-05T15:59:44,877   adding 'moleculekit/share/pdb2pqr/residues/HOX.dat'
2024-06-05T15:59:44,879   adding 'moleculekit/share/pdb2pqr/residues/HOX.xml'
2024-06-05T15:59:44,880   adding 'moleculekit/share/pdb2pqr/residues/HPE.dat'
2024-06-05T15:59:44,881   adding 'moleculekit/share/pdb2pqr/residues/HPE.xml'
2024-06-05T15:59:44,882   adding 'moleculekit/share/pdb2pqr/residues/HQA.dat'
2024-06-05T15:59:44,884   adding 'moleculekit/share/pdb2pqr/residues/HQA.xml'
2024-06-05T15:59:44,885   adding 'moleculekit/share/pdb2pqr/residues/HTR.dat'
2024-06-05T15:59:44,886   adding 'moleculekit/share/pdb2pqr/residues/HTR.xml'
2024-06-05T15:59:44,887   adding 'moleculekit/share/pdb2pqr/residues/HYP.dat'
2024-06-05T15:59:44,889   adding 'moleculekit/share/pdb2pqr/residues/HYP.xml'
2024-06-05T15:59:44,890   adding 'moleculekit/share/pdb2pqr/residues/I2M.dat'
2024-06-05T15:59:44,891   adding 'moleculekit/share/pdb2pqr/residues/I2M.xml'
2024-06-05T15:59:44,892   adding 'moleculekit/share/pdb2pqr/residues/IGL.dat'
2024-06-05T15:59:44,893   adding 'moleculekit/share/pdb2pqr/residues/IGL.xml'
2024-06-05T15:59:44,895   adding 'moleculekit/share/pdb2pqr/residues/IIL.dat'
2024-06-05T15:59:44,896   adding 'moleculekit/share/pdb2pqr/residues/IIL.xml'
2024-06-05T15:59:44,897   adding 'moleculekit/share/pdb2pqr/residues/IML.dat'
2024-06-05T15:59:44,899   adding 'moleculekit/share/pdb2pqr/residues/IML.xml'
2024-06-05T15:59:44,900   adding 'moleculekit/share/pdb2pqr/residues/KYN.dat'
2024-06-05T15:59:44,901   adding 'moleculekit/share/pdb2pqr/residues/KYN.xml'
2024-06-05T15:59:44,902   adding 'moleculekit/share/pdb2pqr/residues/LME.dat'
2024-06-05T15:59:44,904   adding 'moleculekit/share/pdb2pqr/residues/LME.xml'
2024-06-05T15:59:44,905   adding 'moleculekit/share/pdb2pqr/residues/LMQ.dat'
2024-06-05T15:59:44,906   adding 'moleculekit/share/pdb2pqr/residues/LMQ.xml'
2024-06-05T15:59:44,907   adding 'moleculekit/share/pdb2pqr/residues/LYZ.dat'
2024-06-05T15:59:44,908   adding 'moleculekit/share/pdb2pqr/residues/LYZ.xml'
2024-06-05T15:59:44,910   adding 'moleculekit/share/pdb2pqr/residues/M3L.dat'
2024-06-05T15:59:44,911   adding 'moleculekit/share/pdb2pqr/residues/M3L.xml'
2024-06-05T15:59:44,912   adding 'moleculekit/share/pdb2pqr/residues/ME0.dat'
2024-06-05T15:59:44,914   adding 'moleculekit/share/pdb2pqr/residues/ME0.xml'
2024-06-05T15:59:44,915   adding 'moleculekit/share/pdb2pqr/residues/MEA.dat'
2024-06-05T15:59:44,916   adding 'moleculekit/share/pdb2pqr/residues/MEA.xml'
2024-06-05T15:59:44,917   adding 'moleculekit/share/pdb2pqr/residues/MEN.dat'
2024-06-05T15:59:44,919   adding 'moleculekit/share/pdb2pqr/residues/MEN.xml'
2024-06-05T15:59:44,920   adding 'moleculekit/share/pdb2pqr/residues/MEQ.dat'
2024-06-05T15:59:44,921   adding 'moleculekit/share/pdb2pqr/residues/MEQ.xml'
2024-06-05T15:59:44,922   adding 'moleculekit/share/pdb2pqr/residues/MLE.dat'
2024-06-05T15:59:44,924   adding 'moleculekit/share/pdb2pqr/residues/MLE.xml'
2024-06-05T15:59:44,925   adding 'moleculekit/share/pdb2pqr/residues/MLY.dat'
2024-06-05T15:59:44,926   adding 'moleculekit/share/pdb2pqr/residues/MLY.xml'
2024-06-05T15:59:44,927   adding 'moleculekit/share/pdb2pqr/residues/MLZ.dat'
2024-06-05T15:59:44,929   adding 'moleculekit/share/pdb2pqr/residues/MLZ.xml'
2024-06-05T15:59:44,930   adding 'moleculekit/share/pdb2pqr/residues/MME.dat'
2024-06-05T15:59:44,931   adding 'moleculekit/share/pdb2pqr/residues/MME.xml'
2024-06-05T15:59:44,932   adding 'moleculekit/share/pdb2pqr/residues/MMO.dat'
2024-06-05T15:59:44,934   adding 'moleculekit/share/pdb2pqr/residues/MMO.xml'
2024-06-05T15:59:44,935   adding 'moleculekit/share/pdb2pqr/residues/MVA.dat'
2024-06-05T15:59:44,936   adding 'moleculekit/share/pdb2pqr/residues/MVA.xml'
2024-06-05T15:59:44,937   adding 'moleculekit/share/pdb2pqr/residues/NAL.dat'
2024-06-05T15:59:44,939   adding 'moleculekit/share/pdb2pqr/residues/NAL.xml'
2024-06-05T15:59:44,940   adding 'moleculekit/share/pdb2pqr/residues/NCY.dat'
2024-06-05T15:59:44,941   adding 'moleculekit/share/pdb2pqr/residues/NCY.xml'
2024-06-05T15:59:44,942   adding 'moleculekit/share/pdb2pqr/residues/NLE.dat'
2024-06-05T15:59:44,943   adding 'moleculekit/share/pdb2pqr/residues/NLE.xml'
2024-06-05T15:59:44,945   adding 'moleculekit/share/pdb2pqr/residues/NVA.dat'
2024-06-05T15:59:44,946   adding 'moleculekit/share/pdb2pqr/residues/NVA.xml'
2024-06-05T15:59:44,947   adding 'moleculekit/share/pdb2pqr/residues/NZC.dat'
2024-06-05T15:59:44,948   adding 'moleculekit/share/pdb2pqr/residues/NZC.xml'
2024-06-05T15:59:44,949   adding 'moleculekit/share/pdb2pqr/residues/OCY.dat'
2024-06-05T15:59:44,951   adding 'moleculekit/share/pdb2pqr/residues/OCY.xml'
2024-06-05T15:59:44,952   adding 'moleculekit/share/pdb2pqr/residues/OMX.dat'
2024-06-05T15:59:44,953   adding 'moleculekit/share/pdb2pqr/residues/OMX.xml'
2024-06-05T15:59:44,954   adding 'moleculekit/share/pdb2pqr/residues/ONL.dat'
2024-06-05T15:59:44,956   adding 'moleculekit/share/pdb2pqr/residues/ONL.xml'
2024-06-05T15:59:44,957   adding 'moleculekit/share/pdb2pqr/residues/ORM.dat'
2024-06-05T15:59:44,958   adding 'moleculekit/share/pdb2pqr/residues/ORM.xml'
2024-06-05T15:59:44,959   adding 'moleculekit/share/pdb2pqr/residues/P1L.dat'
2024-06-05T15:59:44,961   adding 'moleculekit/share/pdb2pqr/residues/P1L.xml'
2024-06-05T15:59:44,962   adding 'moleculekit/share/pdb2pqr/residues/PCA.dat'
2024-06-05T15:59:44,963   adding 'moleculekit/share/pdb2pqr/residues/PCA.xml'
2024-06-05T15:59:44,964   adding 'moleculekit/share/pdb2pqr/residues/PRK.dat'
2024-06-05T15:59:44,966   adding 'moleculekit/share/pdb2pqr/residues/PRK.xml'
2024-06-05T15:59:44,967   adding 'moleculekit/share/pdb2pqr/residues/PTR.dat'
2024-06-05T15:59:44,968   adding 'moleculekit/share/pdb2pqr/residues/PTR.xml'
2024-06-05T15:59:44,969   adding 'moleculekit/share/pdb2pqr/residues/SEP.dat'
2024-06-05T15:59:44,971   adding 'moleculekit/share/pdb2pqr/residues/SEP.xml'
2024-06-05T15:59:44,972   adding 'moleculekit/share/pdb2pqr/residues/TPO.dat'
2024-06-05T15:59:44,973   adding 'moleculekit/share/pdb2pqr/residues/TPO.xml'
2024-06-05T15:59:44,974   adding 'moleculekit/share/pdb2pqr/residues/TRO.dat'
2024-06-05T15:59:44,976   adding 'moleculekit/share/pdb2pqr/residues/TRO.xml'
2024-06-05T15:59:44,977   adding 'moleculekit/share/pdb2pqr/residues/TY2.dat'
2024-06-05T15:59:44,978   adding 'moleculekit/share/pdb2pqr/residues/TY2.xml'
2024-06-05T15:59:44,980   adding 'moleculekit/share/pdb2pqr/residues/TYQ.dat'
2024-06-05T15:59:44,981   adding 'moleculekit/share/pdb2pqr/residues/TYQ.xml'
2024-06-05T15:59:44,982   adding 'moleculekit/share/pdb2pqr/residues/YCM.dat'
2024-06-05T15:59:44,984   adding 'moleculekit/share/pdb2pqr/residues/YCM.xml'
2024-06-05T15:59:44,985   adding 'moleculekit/share/pdb2pqr/residues/YNM.dat'
2024-06-05T15:59:44,986   adding 'moleculekit/share/pdb2pqr/residues/YNM.xml'
2024-06-05T15:59:44,988   adding 'moleculekit/smallmol/__init__.py'
2024-06-05T15:59:44,993   adding 'moleculekit/smallmol/smallmol.py'
2024-06-05T15:59:44,995   adding 'moleculekit/smallmol/smallmolcdp.py'
2024-06-05T15:59:44,998   adding 'moleculekit/smallmol/smallmollib.py'
2024-06-05T15:59:44,999   adding 'moleculekit/smallmol/test_smallmol.py'
2024-06-05T15:59:45,001   adding 'moleculekit/smallmol/test_smallmollib.py'
2024-06-05T15:59:45,003   adding 'moleculekit/smallmol/util.py'
2024-06-05T15:59:45,005   adding 'moleculekit/smallmol/tools/__init__.py'
2024-06-05T15:59:45,007   adding 'moleculekit/smallmol/tools/clustering.py'
2024-06-05T15:59:45,008   adding 'moleculekit/smallmol/tools/restrainedembed.py'
2024-06-05T15:59:45,010   adding 'moleculekit/smallmol/tools/test_tools.py'
2024-06-05T15:59:45,101   adding 'moleculekit/tmalign/tmalign_util.cpp'
2024-06-05T15:59:45,110   adding 'moleculekit/tmalign/tmalign_util.pyx'
2024-06-05T15:59:45,111   adding 'moleculekit/tmalign/tmalignlib.pxd'
2024-06-05T15:59:45,113   adding 'moleculekit/tmalign/include/TMAlign.h'
2024-06-05T15:59:45,131   adding 'moleculekit/tmalign/src/TMAlign.cpp'
2024-06-05T15:59:45,134   adding 'moleculekit/tools/__init__.py'
2024-06-05T15:59:45,136   adding 'moleculekit/tools/atomtyper.py'
2024-06-05T15:59:45,138   adding 'moleculekit/tools/autosegment.py'
2024-06-05T15:59:45,140   adding 'moleculekit/tools/crystalpacking.py'
2024-06-05T15:59:45,144   adding 'moleculekit/tools/detect.py'
2024-06-05T15:59:45,146   adding 'moleculekit/tools/docking.py'
2024-06-05T15:59:45,147   adding 'moleculekit/tools/graphalignment.py'
2024-06-05T15:59:45,149   adding 'moleculekit/tools/hhblitsprofile.py'
2024-06-05T15:59:45,150   adding 'moleculekit/tools/modelling.py'
2024-06-05T15:59:45,152   adding 'moleculekit/tools/moleculechecks.py'
2024-06-05T15:59:45,158   adding 'moleculekit/tools/preparation.py'
2024-06-05T15:59:45,161   adding 'moleculekit/tools/preparation_customres.py'
2024-06-05T15:59:45,163   adding 'moleculekit/tools/sequencestructuralalignment.py'
2024-06-05T15:59:45,166   adding 'moleculekit/tools/voxeldescriptors.py'
2024-06-05T15:59:45,168   adding 'moleculekit/tools/obabel_tools/__init__.py'
2024-06-05T15:59:45,169   adding 'moleculekit/tools/obabel_tools/obabel_cli.py'
2024-06-05T15:59:45,262   adding 'moleculekit/wrapping/wrapping.cpp'
2024-06-05T15:59:45,271   adding 'moleculekit/wrapping/wrapping.pyx'
2024-06-05T15:59:45,274   adding 'moleculekit-1.8.33.dist-info/LICENSE'
2024-06-05T15:59:45,275   adding 'moleculekit-1.8.33.dist-info/METADATA'
2024-06-05T15:59:45,276   adding 'moleculekit-1.8.33.dist-info/WHEEL'
2024-06-05T15:59:45,277   adding 'moleculekit-1.8.33.dist-info/top_level.txt'
2024-06-05T15:59:45,283   adding 'moleculekit-1.8.33.dist-info/RECORD'
2024-06-05T15:59:45,581   removing build/bdist.linux-armv7l/wheel
2024-06-05T15:59:45,874   Building wheel for moleculekit (pyproject.toml): finished with status 'done'
2024-06-05T15:59:46,211   Created wheel for moleculekit: filename=moleculekit-1.8.33-cp39-cp39-linux_armv7l.whl size=14905261 sha256=3d6bb5aa26d1b0395385d5f79f151e71fc73ec74703c4bcd649823311c63a46d
2024-06-05T15:59:46,212   Stored in directory: /tmp/pip-ephem-wheel-cache-pg2_ttvo/wheels/14/48/b6/559d548622bb6b2e2e0c19180df304cda4b15bfe1b8c39b15d
2024-06-05T15:59:46,250 Successfully built moleculekit
2024-06-05T15:59:46,653 Removed build tracker: '/tmp/pip-build-tracker-zn9uxige'