2024-06-05T17:03:23,726 Created temporary directory: /tmp/pip-build-tracker-rbiing0w 2024-06-05T17:03:23,727 Initialized build tracking at /tmp/pip-build-tracker-rbiing0w 2024-06-05T17:03:23,728 Created build tracker: /tmp/pip-build-tracker-rbiing0w 2024-06-05T17:03:23,728 Entered build tracker: /tmp/pip-build-tracker-rbiing0w 2024-06-05T17:03:23,729 Created temporary directory: /tmp/pip-wheel-n166opcp 2024-06-05T17:03:23,732 Created temporary directory: /tmp/pip-ephem-wheel-cache-gnz9zfpw 2024-06-05T17:03:23,754 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2024-06-05T17:03:23,758 2 location(s) to search for versions of pyrepseq: 2024-06-05T17:03:23,758 * https://pypi.org/simple/pyrepseq/ 2024-06-05T17:03:23,758 * https://www.piwheels.org/simple/pyrepseq/ 2024-06-05T17:03:23,759 Fetching project page and analyzing links: https://pypi.org/simple/pyrepseq/ 2024-06-05T17:03:23,759 Getting page https://pypi.org/simple/pyrepseq/ 2024-06-05T17:03:23,761 Found index url https://pypi.org/simple/ 2024-06-05T17:03:23,972 Fetched page https://pypi.org/simple/pyrepseq/ as application/vnd.pypi.simple.v1+json 2024-06-05T17:03:23,977 Found link https://files.pythonhosted.org/packages/2a/6e/d407f221827595d7c7c6c953fbce9cbe78539177fdafd66bd0d52e91c4ec/pyrepseq-0.1.tar.gz (from https://pypi.org/simple/pyrepseq/), version: 0.1 2024-06-05T17:03:23,977 Skipping link: No binaries permitted for pyrepseq: https://files.pythonhosted.org/packages/5c/cd/8dba70272781c74c063534ea320b7cf0f2ff331c5cf82879e4ba5f4d486f/pyrepseq-0.1.1-py3-none-any.whl (from https://pypi.org/simple/pyrepseq/) 2024-06-05T17:03:23,978 Found link https://files.pythonhosted.org/packages/93/d2/f802eda9252735e6a9f7af211f04e8e80c0be5f9fc608b2cce3711706e02/pyrepseq-0.1.1.tar.gz (from https://pypi.org/simple/pyrepseq/), version: 0.1.1 2024-06-05T17:03:23,979 Skipping link: No binaries permitted for pyrepseq: https://files.pythonhosted.org/packages/d1/70/9e4c3a39f9b3f0bfbd18c59bd77d9238c94cb11261fbdbb586ca8cdd1fc1/pyrepseq-0.1.2-py3-none-any.whl (from https://pypi.org/simple/pyrepseq/) 2024-06-05T17:03:23,979 Found link https://files.pythonhosted.org/packages/6e/df/c15c0625921eba17f79e027967d3a015ec3997dc2b9f183e6630d91acab0/pyrepseq-0.1.2.tar.gz (from https://pypi.org/simple/pyrepseq/), version: 0.1.2 2024-06-05T17:03:23,980 Skipping link: No binaries permitted for pyrepseq: https://files.pythonhosted.org/packages/33/e1/4054c735bc4aca16b9613f3544b23d867980b98c17a1f67e9fa5d1f067c4/pyrepseq-0.1.3-py3-none-any.whl (from https://pypi.org/simple/pyrepseq/) 2024-06-05T17:03:23,980 Found link https://files.pythonhosted.org/packages/4d/81/85d54e0ce44d05782f34e5258ba3410e795fbd9643270cdb0429aa2bf696/pyrepseq-0.1.3.tar.gz (from https://pypi.org/simple/pyrepseq/), version: 0.1.3 2024-06-05T17:03:23,981 Skipping link: No binaries permitted for pyrepseq: https://files.pythonhosted.org/packages/b3/c7/7c52bc35a286936e52ed0245bf4b677204c805c8b8283c7b6877b6d9ea58/pyrepseq-1.0-py3-none-any.whl (from https://pypi.org/simple/pyrepseq/) 2024-06-05T17:03:23,982 Found link https://files.pythonhosted.org/packages/53/88/117c964bf05e99f446ee034cf644db7b38babb91c6c840fb877e68e3c715/pyrepseq-1.0.tar.gz (from https://pypi.org/simple/pyrepseq/), version: 1.0 2024-06-05T17:03:23,982 Skipping link: No binaries permitted for pyrepseq: https://files.pythonhosted.org/packages/b8/dc/b6c4e3218eaf10b532e47dbf805b72306e8552f5bc5abdc26ce34dd3da69/pyrepseq-1.1-py3-none-any.whl (from https://pypi.org/simple/pyrepseq/) 2024-06-05T17:03:23,983 Found link https://files.pythonhosted.org/packages/38/bb/4c7ec5857987459bdc64b7719ec97c4be8d4ea4c351107aba0e2d8cab594/pyrepseq-1.1.tar.gz (from https://pypi.org/simple/pyrepseq/), version: 1.1 2024-06-05T17:03:23,983 Skipping link: No binaries permitted for pyrepseq: https://files.pythonhosted.org/packages/d3/cf/b584a8f6511e29396c677a6f8c7f61568c1313315ff1da952a69af93c577/pyrepseq-1.2.1-py3-none-any.whl (from https://pypi.org/simple/pyrepseq/) 2024-06-05T17:03:23,984 Found link https://files.pythonhosted.org/packages/3a/9b/33c3e43636f669afed2f76afc16fa5a96d924b056231d15913d0ca9bc39d/pyrepseq-1.2.1.tar.gz (from https://pypi.org/simple/pyrepseq/), version: 1.2.1 2024-06-05T17:03:23,985 Skipping link: No binaries permitted for pyrepseq: https://files.pythonhosted.org/packages/cc/66/80fe2ce26a1eba7a79286c1403a09a8957951bc68b02ce56688beff4b44c/pyrepseq-1.3-py3-none-any.whl (from https://pypi.org/simple/pyrepseq/) 2024-06-05T17:03:23,986 Found link https://files.pythonhosted.org/packages/5c/6d/f39d9ea26b26378c25ac0dd13e534ba27876dc8c954a59d396d96ff4322c/pyrepseq-1.3.tar.gz (from https://pypi.org/simple/pyrepseq/), version: 1.3 2024-06-05T17:03:23,987 Skipping link: No binaries permitted for pyrepseq: https://files.pythonhosted.org/packages/b4/f1/6b03f75336686f711d0fe36f6619f1836ccaf6417e9755a6fa5d6a97639e/pyrepseq-1.4-py3-none-any.whl (from https://pypi.org/simple/pyrepseq/) 2024-06-05T17:03:23,987 Found link https://files.pythonhosted.org/packages/13/2d/1b0e6e392fa4ef967d42efe3c2a9c7a08f96636bafa36867b60ddd6e1d3a/pyrepseq-1.4.tar.gz (from https://pypi.org/simple/pyrepseq/), version: 1.4 2024-06-05T17:03:23,988 Skipping link: No binaries permitted for pyrepseq: https://files.pythonhosted.org/packages/53/1a/197e7d0dc58559d300454c395e2d19a8ec0fbf1e0628bd82e75e1481559a/pyrepseq-1.4.1-py3-none-any.whl (from https://pypi.org/simple/pyrepseq/) 2024-06-05T17:03:23,988 Found link https://files.pythonhosted.org/packages/e2/de/4c2343c1bede91e84f287acc18c4bd77475cd4e5491378ec53b3703b73bb/pyrepseq-1.4.1.tar.gz (from https://pypi.org/simple/pyrepseq/), version: 1.4.1 2024-06-05T17:03:23,989 Skipping link: No binaries permitted for pyrepseq: https://files.pythonhosted.org/packages/08/e4/79d0ca103ff8d66bfbe1635f5ed2b9b363baa7f3321aa7ea5ed98e21b52c/pyrepseq-1.4.2-py3-none-any.whl (from https://pypi.org/simple/pyrepseq/) 2024-06-05T17:03:23,989 Found link https://files.pythonhosted.org/packages/e5/1e/25f2bd41c49615d048517599dd6ef171d6f2564f3433e79f94f54eb6c5bf/pyrepseq-1.4.2.tar.gz (from https://pypi.org/simple/pyrepseq/), version: 1.4.2 2024-06-05T17:03:23,990 Skipping link: No binaries permitted for pyrepseq: https://files.pythonhosted.org/packages/e1/4c/b270fb8af021ee5fbc8e125c78ab0fc77831db0e91d4945205b5407817d6/pyrepseq-1.4.3-py3-none-any.whl (from https://pypi.org/simple/pyrepseq/) 2024-06-05T17:03:23,991 Found link https://files.pythonhosted.org/packages/f0/3d/efd19a946d8ccfa97649cb06e7805fd7ad368f8cf9ce09dfdfacfa2c2621/pyrepseq-1.4.3.tar.gz (from https://pypi.org/simple/pyrepseq/), version: 1.4.3 2024-06-05T17:03:23,992 Fetching project page and analyzing links: https://www.piwheels.org/simple/pyrepseq/ 2024-06-05T17:03:23,992 Getting page https://www.piwheels.org/simple/pyrepseq/ 2024-06-05T17:03:23,994 Found index url https://www.piwheels.org/simple/ 2024-06-05T17:03:24,150 Fetched page https://www.piwheels.org/simple/pyrepseq/ as text/html 2024-06-05T17:03:24,154 Skipping link: No binaries permitted for pyrepseq: https://www.piwheels.org/simple/pyrepseq/pyrepseq-1.4.2-py3-none-any.whl#sha256=4f85460ca48b01a059ce8cd5aa8155089b5472adf6a3f6f3c7cfa858c738975b (from https://www.piwheels.org/simple/pyrepseq/) 2024-06-05T17:03:24,155 Skipping link: No binaries permitted for pyrepseq: https://www.piwheels.org/simple/pyrepseq/pyrepseq-1.4.1-py3-none-any.whl#sha256=e8887fc67a460525b1e18c6ef07d15034d9f030bd621b9c36404a8168cc24097 (from https://www.piwheels.org/simple/pyrepseq/) 2024-06-05T17:03:24,155 Skipping link: No binaries permitted for pyrepseq: https://www.piwheels.org/simple/pyrepseq/pyrepseq-1.4-py3-none-any.whl#sha256=5f9323b2c4c3856be179d4612bd53da2637fa105b1ce3dbe2f42e139ee02793e (from https://www.piwheels.org/simple/pyrepseq/) 2024-06-05T17:03:24,156 Skipping link: No binaries permitted for pyrepseq: https://www.piwheels.org/simple/pyrepseq/pyrepseq-1.3-py3-none-any.whl#sha256=043211448864434ccd2638515bf080887e976d5fd58e80ae8f4e62bd7ec47acd (from https://www.piwheels.org/simple/pyrepseq/) 2024-06-05T17:03:24,156 Skipping link: No binaries permitted for pyrepseq: https://www.piwheels.org/simple/pyrepseq/pyrepseq-1.2.1-py3-none-any.whl#sha256=3827fdf914f3c447526b8d6444cb79f808d9f8ac052e7535b927b760d7c4677a (from https://www.piwheels.org/simple/pyrepseq/) 2024-06-05T17:03:24,157 Skipping link: No binaries permitted for pyrepseq: https://www.piwheels.org/simple/pyrepseq/pyrepseq-1.1-py3-none-any.whl#sha256=70461442abcbee78e7f4129129734b7fd33a3d2a409a1ed5f44f1c0929c62767 (from https://www.piwheels.org/simple/pyrepseq/) 2024-06-05T17:03:24,158 Skipping link: No binaries permitted for pyrepseq: https://www.piwheels.org/simple/pyrepseq/pyrepseq-1.0-py3-none-any.whl#sha256=e0ff1b66143de1d0c6a7695d6b73bb87d88015462b94678201bd60e43bae8574 (from https://www.piwheels.org/simple/pyrepseq/) 2024-06-05T17:03:24,158 Skipping link: No binaries permitted for pyrepseq: https://www.piwheels.org/simple/pyrepseq/pyrepseq-0.1.3-py3-none-any.whl#sha256=dd8c3b5497b6b416298f499b916cb5f25a0b4a95fa8c442781fecf097b2b39d4 (from https://www.piwheels.org/simple/pyrepseq/) 2024-06-05T17:03:24,159 Skipping link: No binaries permitted for pyrepseq: https://www.piwheels.org/simple/pyrepseq/pyrepseq-0.1.2-py3-none-any.whl#sha256=11d290404e581d46bf05739028106fb7fdc5cba61c4b27e7eb7f202a84780495 (from https://www.piwheels.org/simple/pyrepseq/) 2024-06-05T17:03:24,159 Skipping link: No binaries permitted for pyrepseq: https://www.piwheels.org/simple/pyrepseq/pyrepseq-0.1.1-py3-none-any.whl#sha256=ba09350e430a07ba4ea87b20d55a5c22879b48bb644f2fcbacd0a8fd6fe5c37c (from https://www.piwheels.org/simple/pyrepseq/) 2024-06-05T17:03:24,160 Skipping link: No binaries permitted for pyrepseq: https://www.piwheels.org/simple/pyrepseq/pyrepseq-0.1-py3-none-any.whl#sha256=1bdb281f17e308d5eaa2580ceb8b2ec1faac7d29eda44a6727d2027b2c607e06 (from https://www.piwheels.org/simple/pyrepseq/) 2024-06-05T17:03:24,160 Skipping link: not a file: https://www.piwheels.org/simple/pyrepseq/ 2024-06-05T17:03:24,161 Skipping link: not a file: https://pypi.org/simple/pyrepseq/ 2024-06-05T17:03:24,182 Given no hashes to check 1 links for project 'pyrepseq': discarding no candidates 2024-06-05T17:03:24,201 Collecting pyrepseq==1.4.3 2024-06-05T17:03:24,204 Created temporary directory: /tmp/pip-unpack-frcwlra2 2024-06-05T17:03:24,427 Downloading pyrepseq-1.4.3.tar.gz (53 kB) 2024-06-05T17:03:24,556 Added pyrepseq==1.4.3 from https://files.pythonhosted.org/packages/f0/3d/efd19a946d8ccfa97649cb06e7805fd7ad368f8cf9ce09dfdfacfa2c2621/pyrepseq-1.4.3.tar.gz to build tracker '/tmp/pip-build-tracker-rbiing0w' 2024-06-05T17:03:24,558 Running setup.py (path:/tmp/pip-wheel-n166opcp/pyrepseq_45fea5eaa97941adb31b1feb94d44230/setup.py) egg_info for package pyrepseq 2024-06-05T17:03:24,559 Created temporary directory: /tmp/pip-pip-egg-info-hwqmo_q7 2024-06-05T17:03:24,559 Preparing metadata (setup.py): started 2024-06-05T17:03:24,560 Running command python setup.py egg_info 2024-06-05T17:03:25,446 running egg_info 2024-06-05T17:03:25,447 creating /tmp/pip-pip-egg-info-hwqmo_q7/pyrepseq.egg-info 2024-06-05T17:03:25,474 writing /tmp/pip-pip-egg-info-hwqmo_q7/pyrepseq.egg-info/PKG-INFO 2024-06-05T17:03:25,479 writing dependency_links to /tmp/pip-pip-egg-info-hwqmo_q7/pyrepseq.egg-info/dependency_links.txt 2024-06-05T17:03:25,482 writing requirements to /tmp/pip-pip-egg-info-hwqmo_q7/pyrepseq.egg-info/requires.txt 2024-06-05T17:03:25,483 writing top-level names to /tmp/pip-pip-egg-info-hwqmo_q7/pyrepseq.egg-info/top_level.txt 2024-06-05T17:03:25,485 writing manifest file '/tmp/pip-pip-egg-info-hwqmo_q7/pyrepseq.egg-info/SOURCES.txt' 2024-06-05T17:03:25,577 reading manifest file '/tmp/pip-pip-egg-info-hwqmo_q7/pyrepseq.egg-info/SOURCES.txt' 2024-06-05T17:03:25,578 adding license file 'LICENSE' 2024-06-05T17:03:25,581 writing manifest file '/tmp/pip-pip-egg-info-hwqmo_q7/pyrepseq.egg-info/SOURCES.txt' 2024-06-05T17:03:25,688 Preparing metadata (setup.py): finished with status 'done' 2024-06-05T17:03:25,692 Source in /tmp/pip-wheel-n166opcp/pyrepseq_45fea5eaa97941adb31b1feb94d44230 has version 1.4.3, which satisfies requirement pyrepseq==1.4.3 from https://files.pythonhosted.org/packages/f0/3d/efd19a946d8ccfa97649cb06e7805fd7ad368f8cf9ce09dfdfacfa2c2621/pyrepseq-1.4.3.tar.gz 2024-06-05T17:03:25,693 Removed pyrepseq==1.4.3 from https://files.pythonhosted.org/packages/f0/3d/efd19a946d8ccfa97649cb06e7805fd7ad368f8cf9ce09dfdfacfa2c2621/pyrepseq-1.4.3.tar.gz from build tracker '/tmp/pip-build-tracker-rbiing0w' 2024-06-05T17:03:25,698 Created temporary directory: /tmp/pip-unpack-s4c0ggsi 2024-06-05T17:03:25,699 Created temporary directory: /tmp/pip-unpack-3on2b7_4 2024-06-05T17:03:25,730 Building wheels for collected packages: pyrepseq 2024-06-05T17:03:25,734 Created temporary directory: /tmp/pip-wheel-kx2ddt3v 2024-06-05T17:03:25,735 Building wheel for pyrepseq (setup.py): started 2024-06-05T17:03:25,736 Destination directory: /tmp/pip-wheel-kx2ddt3v 2024-06-05T17:03:25,737 Running command python setup.py bdist_wheel 2024-06-05T17:03:26,615 running bdist_wheel 2024-06-05T17:03:26,752 running build 2024-06-05T17:03:26,753 running build_py 2024-06-05T17:03:26,782 creating build 2024-06-05T17:03:26,782 creating build/lib 2024-06-05T17:03:26,783 creating build/lib/pyrepseq 2024-06-05T17:03:26,785 copying pyrepseq/nn.py -> build/lib/pyrepseq 2024-06-05T17:03:26,787 copying pyrepseq/plotting.py -> build/lib/pyrepseq 2024-06-05T17:03:26,791 copying pyrepseq/distance.py -> build/lib/pyrepseq 2024-06-05T17:03:26,794 copying pyrepseq/io.py -> build/lib/pyrepseq 2024-06-05T17:03:26,796 copying pyrepseq/version.py -> build/lib/pyrepseq 2024-06-05T17:03:26,798 copying pyrepseq/__init__.py -> build/lib/pyrepseq 2024-06-05T17:03:26,800 copying pyrepseq/clustering.py -> build/lib/pyrepseq 2024-06-05T17:03:26,802 copying pyrepseq/util.py -> build/lib/pyrepseq 2024-06-05T17:03:26,803 copying pyrepseq/stats.py -> build/lib/pyrepseq 2024-06-05T17:03:26,806 creating build/lib/pyrepseq/metric 2024-06-05T17:03:26,807 copying pyrepseq/metric/levenshtein.py -> build/lib/pyrepseq/metric 2024-06-05T17:03:26,809 copying pyrepseq/metric/__init__.py -> build/lib/pyrepseq/metric 2024-06-05T17:03:26,811 copying pyrepseq/metric/metric.py -> build/lib/pyrepseq/metric 2024-06-05T17:03:26,813 creating build/lib/pyrepseq/metric/tcr_metric 2024-06-05T17:03:26,814 copying pyrepseq/metric/tcr_metric/tcr_levenshtein.py -> build/lib/pyrepseq/metric/tcr_metric 2024-06-05T17:03:26,817 copying pyrepseq/metric/tcr_metric/tcr_metric.py -> build/lib/pyrepseq/metric/tcr_metric 2024-06-05T17:03:26,819 copying pyrepseq/metric/tcr_metric/__init__.py -> build/lib/pyrepseq/metric/tcr_metric 2024-06-05T17:03:26,821 creating build/lib/pyrepseq/metric/tcr_metric/tcrdist 2024-06-05T17:03:26,822 copying pyrepseq/metric/tcr_metric/tcrdist/tcrdist_metric.py -> build/lib/pyrepseq/metric/tcr_metric/tcrdist 2024-06-05T17:03:26,825 copying pyrepseq/metric/tcr_metric/tcrdist/__init__.py -> build/lib/pyrepseq/metric/tcr_metric/tcrdist 2024-06-05T17:03:26,826 copying pyrepseq/metric/tcr_metric/tcrdist/simplified_tcrdist_interface.py -> build/lib/pyrepseq/metric/tcr_metric/tcrdist 2024-06-05T17:03:26,828 running egg_info 2024-06-05T17:03:26,857 writing pyrepseq.egg-info/PKG-INFO 2024-06-05T17:03:26,863 writing dependency_links to pyrepseq.egg-info/dependency_links.txt 2024-06-05T17:03:26,866 writing requirements to pyrepseq.egg-info/requires.txt 2024-06-05T17:03:26,867 writing top-level names to pyrepseq.egg-info/top_level.txt 2024-06-05T17:03:26,901 reading manifest file 'pyrepseq.egg-info/SOURCES.txt' 2024-06-05T17:03:26,903 adding license file 'LICENSE' 2024-06-05T17:03:26,906 writing manifest file 'pyrepseq.egg-info/SOURCES.txt' 2024-06-05T17:03:26,909 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'pyrepseq.data' is absent from the `packages` configuration. 2024-06-05T17:03:26,909 !! 2024-06-05T17:03:26,910 ******************************************************************************** 2024-06-05T17:03:26,911 ############################ 2024-06-05T17:03:26,912 # Package would be ignored # 2024-06-05T17:03:26,912 ############################ 2024-06-05T17:03:26,913 Python recognizes 'pyrepseq.data' as an importable package[^1], 2024-06-05T17:03:26,914 but it is absent from setuptools' `packages` configuration. 2024-06-05T17:03:26,915 This leads to an ambiguous overall configuration. If you want to distribute this 2024-06-05T17:03:26,915 package, please make sure that 'pyrepseq.data' is explicitly added 2024-06-05T17:03:26,916 to the `packages` configuration field. 2024-06-05T17:03:26,916 Alternatively, you can also rely on setuptools' discovery methods 2024-06-05T17:03:26,917 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-06-05T17:03:26,917 instead of `find_packages(...)`/`find:`). 2024-06-05T17:03:26,918 You can read more about "package discovery" on setuptools documentation page: 2024-06-05T17:03:26,919 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-06-05T17:03:26,920 If you don't want 'pyrepseq.data' to be distributed and are 2024-06-05T17:03:26,921 already explicitly excluding 'pyrepseq.data' via 2024-06-05T17:03:26,921 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-06-05T17:03:26,922 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-06-05T17:03:26,922 combination with a more fine grained `package-data` configuration. 2024-06-05T17:03:26,924 You can read more about "package data files" on setuptools documentation page: 2024-06-05T17:03:26,926 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-06-05T17:03:26,927 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-06-05T17:03:26,928 even if it does not contain any `.py` files. 2024-06-05T17:03:26,929 On the other hand, currently there is no concept of package data 2024-06-05T17:03:26,930 directory, all directories are treated like packages. 2024-06-05T17:03:26,931 ******************************************************************************** 2024-06-05T17:03:26,933 !! 2024-06-05T17:03:26,934 check.warn(importable) 2024-06-05T17:03:26,935 creating build/lib/pyrepseq/data 2024-06-05T17:03:26,936 copying pyrepseq/data/pcdelta_pbmc_minervina.csv -> build/lib/pyrepseq/data 2024-06-05T17:03:26,938 copying pyrepseq/data/vdists_alpha.csv -> build/lib/pyrepseq/data 2024-06-05T17:03:26,938 copying pyrepseq/data/vdists_beta.csv -> build/lib/pyrepseq/data 2024-06-05T17:03:26,961 /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. 2024-06-05T17:03:26,961 !! 2024-06-05T17:03:26,962 ******************************************************************************** 2024-06-05T17:03:26,963 Please avoid running ``setup.py`` directly. 2024-06-05T17:03:26,963 Instead, use pypa/build, pypa/installer or other 2024-06-05T17:03:26,964 standards-based tools. 2024-06-05T17:03:26,965 See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. 2024-06-05T17:03:26,965 ******************************************************************************** 2024-06-05T17:03:26,966 !! 2024-06-05T17:03:26,967 self.initialize_options() 2024-06-05T17:03:26,991 installing to build/bdist.linux-armv7l/wheel 2024-06-05T17:03:26,992 running install 2024-06-05T17:03:27,016 running install_lib 2024-06-05T17:03:27,043 creating build/bdist.linux-armv7l 2024-06-05T17:03:27,043 creating build/bdist.linux-armv7l/wheel 2024-06-05T17:03:27,046 creating build/bdist.linux-armv7l/wheel/pyrepseq 2024-06-05T17:03:27,047 copying build/lib/pyrepseq/nn.py -> build/bdist.linux-armv7l/wheel/pyrepseq 2024-06-05T17:03:27,051 copying build/lib/pyrepseq/plotting.py -> build/bdist.linux-armv7l/wheel/pyrepseq 2024-06-05T17:03:27,054 creating build/bdist.linux-armv7l/wheel/pyrepseq/data 2024-06-05T17:03:27,055 copying build/lib/pyrepseq/data/vdists_beta.csv -> build/bdist.linux-armv7l/wheel/pyrepseq/data 2024-06-05T17:03:27,060 copying build/lib/pyrepseq/data/pcdelta_pbmc_minervina.csv -> build/bdist.linux-armv7l/wheel/pyrepseq/data 2024-06-05T17:03:27,062 copying build/lib/pyrepseq/data/vdists_alpha.csv -> build/bdist.linux-armv7l/wheel/pyrepseq/data 2024-06-05T17:03:27,065 copying build/lib/pyrepseq/distance.py -> build/bdist.linux-armv7l/wheel/pyrepseq 2024-06-05T17:03:27,068 copying build/lib/pyrepseq/io.py -> build/bdist.linux-armv7l/wheel/pyrepseq 2024-06-05T17:03:27,071 copying build/lib/pyrepseq/version.py -> build/bdist.linux-armv7l/wheel/pyrepseq 2024-06-05T17:03:27,073 creating build/bdist.linux-armv7l/wheel/pyrepseq/metric 2024-06-05T17:03:27,075 copying build/lib/pyrepseq/metric/levenshtein.py -> build/bdist.linux-armv7l/wheel/pyrepseq/metric 2024-06-05T17:03:27,077 copying build/lib/pyrepseq/metric/__init__.py -> build/bdist.linux-armv7l/wheel/pyrepseq/metric 2024-06-05T17:03:27,079 copying build/lib/pyrepseq/metric/metric.py -> build/bdist.linux-armv7l/wheel/pyrepseq/metric 2024-06-05T17:03:27,082 creating build/bdist.linux-armv7l/wheel/pyrepseq/metric/tcr_metric 2024-06-05T17:03:27,084 copying build/lib/pyrepseq/metric/tcr_metric/tcr_levenshtein.py -> build/bdist.linux-armv7l/wheel/pyrepseq/metric/tcr_metric 2024-06-05T17:03:27,087 copying build/lib/pyrepseq/metric/tcr_metric/tcr_metric.py -> build/bdist.linux-armv7l/wheel/pyrepseq/metric/tcr_metric 2024-06-05T17:03:27,089 copying build/lib/pyrepseq/metric/tcr_metric/__init__.py -> build/bdist.linux-armv7l/wheel/pyrepseq/metric/tcr_metric 2024-06-05T17:03:27,091 creating build/bdist.linux-armv7l/wheel/pyrepseq/metric/tcr_metric/tcrdist 2024-06-05T17:03:27,093 copying build/lib/pyrepseq/metric/tcr_metric/tcrdist/tcrdist_metric.py -> build/bdist.linux-armv7l/wheel/pyrepseq/metric/tcr_metric/tcrdist 2024-06-05T17:03:27,095 copying build/lib/pyrepseq/metric/tcr_metric/tcrdist/__init__.py -> build/bdist.linux-armv7l/wheel/pyrepseq/metric/tcr_metric/tcrdist 2024-06-05T17:03:27,097 copying build/lib/pyrepseq/metric/tcr_metric/tcrdist/simplified_tcrdist_interface.py -> build/bdist.linux-armv7l/wheel/pyrepseq/metric/tcr_metric/tcrdist 2024-06-05T17:03:27,100 copying build/lib/pyrepseq/__init__.py -> build/bdist.linux-armv7l/wheel/pyrepseq 2024-06-05T17:03:27,104 copying build/lib/pyrepseq/clustering.py -> build/bdist.linux-armv7l/wheel/pyrepseq 2024-06-05T17:03:27,106 copying build/lib/pyrepseq/util.py -> build/bdist.linux-armv7l/wheel/pyrepseq 2024-06-05T17:03:27,108 copying build/lib/pyrepseq/stats.py -> build/bdist.linux-armv7l/wheel/pyrepseq 2024-06-05T17:03:27,111 running install_egg_info 2024-06-05T17:03:27,145 Copying pyrepseq.egg-info to build/bdist.linux-armv7l/wheel/pyrepseq-1.4.3-py3.11.egg-info 2024-06-05T17:03:27,157 running install_scripts 2024-06-05T17:03:27,174 creating build/bdist.linux-armv7l/wheel/pyrepseq-1.4.3.dist-info/WHEEL 2024-06-05T17:03:27,177 creating '/tmp/pip-wheel-kx2ddt3v/pyrepseq-1.4.3-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2024-06-05T17:03:27,179 adding 'pyrepseq/__init__.py' 2024-06-05T17:03:27,181 adding 'pyrepseq/clustering.py' 2024-06-05T17:03:27,184 adding 'pyrepseq/distance.py' 2024-06-05T17:03:27,187 adding 'pyrepseq/io.py' 2024-06-05T17:03:27,190 adding 'pyrepseq/nn.py' 2024-06-05T17:03:27,194 adding 'pyrepseq/plotting.py' 2024-06-05T17:03:27,196 adding 'pyrepseq/stats.py' 2024-06-05T17:03:27,198 adding 'pyrepseq/util.py' 2024-06-05T17:03:27,200 adding 'pyrepseq/version.py' 2024-06-05T17:03:27,202 adding 'pyrepseq/data/pcdelta_pbmc_minervina.csv' 2024-06-05T17:03:27,208 adding 'pyrepseq/data/vdists_alpha.csv' 2024-06-05T17:03:27,218 adding 'pyrepseq/data/vdists_beta.csv' 2024-06-05T17:03:27,220 adding 'pyrepseq/metric/__init__.py' 2024-06-05T17:03:27,222 adding 'pyrepseq/metric/levenshtein.py' 2024-06-05T17:03:27,223 adding 'pyrepseq/metric/metric.py' 2024-06-05T17:03:27,225 adding 'pyrepseq/metric/tcr_metric/__init__.py' 2024-06-05T17:03:27,228 adding 'pyrepseq/metric/tcr_metric/tcr_levenshtein.py' 2024-06-05T17:03:27,229 adding 'pyrepseq/metric/tcr_metric/tcr_metric.py' 2024-06-05T17:03:27,231 adding 'pyrepseq/metric/tcr_metric/tcrdist/__init__.py' 2024-06-05T17:03:27,233 adding 'pyrepseq/metric/tcr_metric/tcrdist/simplified_tcrdist_interface.py' 2024-06-05T17:03:27,235 adding 'pyrepseq/metric/tcr_metric/tcrdist/tcrdist_metric.py' 2024-06-05T17:03:27,238 adding 'pyrepseq-1.4.3.dist-info/LICENSE' 2024-06-05T17:03:27,239 adding 'pyrepseq-1.4.3.dist-info/METADATA' 2024-06-05T17:03:27,241 adding 'pyrepseq-1.4.3.dist-info/WHEEL' 2024-06-05T17:03:27,242 adding 'pyrepseq-1.4.3.dist-info/top_level.txt' 2024-06-05T17:03:27,244 adding 'pyrepseq-1.4.3.dist-info/RECORD' 2024-06-05T17:03:27,246 removing build/bdist.linux-armv7l/wheel 2024-06-05T17:03:27,366 Building wheel for pyrepseq (setup.py): finished with status 'done' 2024-06-05T17:03:27,369 Created wheel for pyrepseq: filename=pyrepseq-1.4.3-py3-none-any.whl size=52924 sha256=9d51f182600297c8fb401a2a953ac8436c2c49daef31ce3f5b8cc32cf0e22ef6 2024-06-05T17:03:27,370 Stored in directory: /tmp/pip-ephem-wheel-cache-gnz9zfpw/wheels/41/2e/48/9af644e22b0e8e6ede3062183588d4eef0f02cf12c5246e179 2024-06-05T17:03:27,381 Successfully built pyrepseq 2024-06-05T17:03:27,387 Removed build tracker: '/tmp/pip-build-tracker-rbiing0w'