2024-06-13T14:41:41,611 Created temporary directory: /tmp/pip-build-tracker-p1x5cxxo 2024-06-13T14:41:41,612 Initialized build tracking at /tmp/pip-build-tracker-p1x5cxxo 2024-06-13T14:41:41,613 Created build tracker: /tmp/pip-build-tracker-p1x5cxxo 2024-06-13T14:41:41,613 Entered build tracker: /tmp/pip-build-tracker-p1x5cxxo 2024-06-13T14:41:41,614 Created temporary directory: /tmp/pip-wheel-iwk81riz 2024-06-13T14:41:41,617 Created temporary directory: /tmp/pip-ephem-wheel-cache-wxjyoyd2 2024-06-13T14:41:41,639 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2024-06-13T14:41:41,643 2 location(s) to search for versions of vcf-subset: 2024-06-13T14:41:41,643 * https://pypi.org/simple/vcf-subset/ 2024-06-13T14:41:41,643 * https://www.piwheels.org/simple/vcf-subset/ 2024-06-13T14:41:41,644 Fetching project page and analyzing links: https://pypi.org/simple/vcf-subset/ 2024-06-13T14:41:41,645 Getting page https://pypi.org/simple/vcf-subset/ 2024-06-13T14:41:41,646 Found index url https://pypi.org/simple/ 2024-06-13T14:41:41,788 Fetched page https://pypi.org/simple/vcf-subset/ as application/vnd.pypi.simple.v1+json 2024-06-13T14:41:41,790 Found link https://files.pythonhosted.org/packages/68/e0/a1fc01739e6486be8b1c8d66cd54056d2b0e2d55ec49686b0b086aa204ac/vcf_subset-1.0.0.tar.gz (from https://pypi.org/simple/vcf-subset/) (requires-python:>=3.7), version: 1.0.0 2024-06-13T14:41:41,791 Found link https://files.pythonhosted.org/packages/e3/f0/fbedfe1b6255872b0ef4964143fd9f7c196fda57a7912dd025b7c7c6b67e/vcf_subset-1.1.0.tar.gz (from https://pypi.org/simple/vcf-subset/) (requires-python:>=3.7), version: 1.1.0 2024-06-13T14:41:41,791 Fetching project page and analyzing links: https://www.piwheels.org/simple/vcf-subset/ 2024-06-13T14:41:41,792 Getting page https://www.piwheels.org/simple/vcf-subset/ 2024-06-13T14:41:41,793 Found index url https://www.piwheels.org/simple/ 2024-06-13T14:41:41,942 Fetched page https://www.piwheels.org/simple/vcf-subset/ as text/html 2024-06-13T14:41:41,944 Skipping link: No binaries permitted for vcf-subset: https://www.piwheels.org/simple/vcf-subset/vcf_subset-1.0.0-cp311-cp311-linux_armv6l.whl#sha256=e7956e85d5e03de680a8edeef2acff3678245470c9bbb1fc9ff3019434d41f40 (from https://www.piwheels.org/simple/vcf-subset/) (requires-python:>=3.7) 2024-06-13T14:41:41,945 Skipping link: No binaries permitted for vcf-subset: https://www.piwheels.org/simple/vcf-subset/vcf_subset-1.0.0-cp311-cp311-linux_armv7l.whl#sha256=e7956e85d5e03de680a8edeef2acff3678245470c9bbb1fc9ff3019434d41f40 (from https://www.piwheels.org/simple/vcf-subset/) (requires-python:>=3.7) 2024-06-13T14:41:41,945 Skipping link: No binaries permitted for vcf-subset: https://www.piwheels.org/simple/vcf-subset/vcf_subset-1.0.0-cp37-cp37m-linux_armv6l.whl#sha256=ed66b8e17ec20bbbd6714454c632a74bdb56b24fc633bb68360bfe0097479faf (from https://www.piwheels.org/simple/vcf-subset/) (requires-python:>=3.7) 2024-06-13T14:41:41,946 Skipping link: No binaries permitted for vcf-subset: https://www.piwheels.org/simple/vcf-subset/vcf_subset-1.0.0-cp37-cp37m-linux_armv7l.whl#sha256=ed66b8e17ec20bbbd6714454c632a74bdb56b24fc633bb68360bfe0097479faf (from https://www.piwheels.org/simple/vcf-subset/) (requires-python:>=3.7) 2024-06-13T14:41:41,947 Skipping link: not a file: https://www.piwheels.org/simple/vcf-subset/ 2024-06-13T14:41:41,947 Skipping link: not a file: https://pypi.org/simple/vcf-subset/ 2024-06-13T14:41:41,968 Given no hashes to check 1 links for project 'vcf-subset': discarding no candidates 2024-06-13T14:41:41,987 Collecting vcf-subset==1.1.0 2024-06-13T14:41:41,990 Created temporary directory: /tmp/pip-unpack-8sk8kd8l 2024-06-13T14:41:42,199 Downloading vcf_subset-1.1.0.tar.gz (2.6 kB) 2024-06-13T14:41:42,224 Added vcf-subset==1.1.0 from https://files.pythonhosted.org/packages/e3/f0/fbedfe1b6255872b0ef4964143fd9f7c196fda57a7912dd025b7c7c6b67e/vcf_subset-1.1.0.tar.gz to build tracker '/tmp/pip-build-tracker-p1x5cxxo' 2024-06-13T14:41:42,229 Created temporary directory: /tmp/pip-build-env-hh0dgbv4 2024-06-13T14:41:42,233 Installing build dependencies: started 2024-06-13T14:41:42,235 Running command pip subprocess to install build dependencies 2024-06-13T14:41:43,364 Using pip 24.0 from /home/piwheels/.local/lib/python3.11/site-packages/pip (python 3.11) 2024-06-13T14:41:43,878 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2024-06-13T14:41:45,382 Collecting setuptools>=42 2024-06-13T14:41:45,396 Using cached https://www.piwheels.org/simple/setuptools/setuptools-70.0.0-py3-none-any.whl (863 kB) 2024-06-13T14:41:45,592 Collecting pybind11>=2.10.0 2024-06-13T14:41:45,606 Using cached https://www.piwheels.org/simple/pybind11/pybind11-2.12.0-py3-none-any.whl (234 kB) 2024-06-13T14:41:48,338 Installing collected packages: setuptools, pybind11 2024-06-13T14:41:50,884 Creating /tmp/pip-build-env-hh0dgbv4/overlay/local/bin 2024-06-13T14:41:50,886 changing mode of /tmp/pip-build-env-hh0dgbv4/overlay/local/bin/pybind11-config to 755 2024-06-13T14:41:50,903 Successfully installed pybind11-2.12.0 setuptools-70.0.0 2024-06-13T14:41:51,398 Installing build dependencies: finished with status 'done' 2024-06-13T14:41:51,401 Getting requirements to build wheel: started 2024-06-13T14:41:51,403 Running command Getting requirements to build wheel 2024-06-13T14:41:51,944 /tmp/pip-build-env-hh0dgbv4/overlay/local/lib/python3.11/dist-packages/setuptools/dist.py:318: InformationOnly: Normalizing 'v1.1.0' to '1.1.0' 2024-06-13T14:41:51,944 self.metadata.version = self._normalize_version(self.metadata.version) 2024-06-13T14:41:51,982 running egg_info 2024-06-13T14:41:51,989 writing vcf_subset.egg-info/PKG-INFO 2024-06-13T14:41:51,992 writing dependency_links to vcf_subset.egg-info/dependency_links.txt 2024-06-13T14:41:51,994 writing top-level names to vcf_subset.egg-info/top_level.txt 2024-06-13T14:41:52,007 reading manifest file 'vcf_subset.egg-info/SOURCES.txt' 2024-06-13T14:41:52,010 writing manifest file 'vcf_subset.egg-info/SOURCES.txt' 2024-06-13T14:41:52,097 Getting requirements to build wheel: finished with status 'done' 2024-06-13T14:41:52,107 Installing backend dependencies: started 2024-06-13T14:41:52,108 Running command pip subprocess to install backend dependencies 2024-06-13T14:41:53,241 Using pip 24.0 from /home/piwheels/.local/lib/python3.11/site-packages/pip (python 3.11) 2024-06-13T14:41:53,757 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2024-06-13T14:41:54,237 Collecting wheel 2024-06-13T14:41:54,252 Using cached https://www.piwheels.org/simple/wheel/wheel-0.43.0-py3-none-any.whl (65 kB) 2024-06-13T14:41:56,651 Installing collected packages: wheel 2024-06-13T14:41:56,874 Creating /tmp/pip-build-env-hh0dgbv4/normal/local/bin 2024-06-13T14:41:56,876 changing mode of /tmp/pip-build-env-hh0dgbv4/normal/local/bin/wheel to 755 2024-06-13T14:41:56,887 Successfully installed wheel-0.43.0 2024-06-13T14:41:57,348 Installing backend dependencies: finished with status 'done' 2024-06-13T14:41:57,350 Created temporary directory: /tmp/pip-modern-metadata-nizr_88v 2024-06-13T14:41:57,353 Preparing metadata (pyproject.toml): started 2024-06-13T14:41:57,354 Running command Preparing metadata (pyproject.toml) 2024-06-13T14:41:57,931 /tmp/pip-build-env-hh0dgbv4/overlay/local/lib/python3.11/dist-packages/setuptools/dist.py:318: InformationOnly: Normalizing 'v1.1.0' to '1.1.0' 2024-06-13T14:41:57,931 self.metadata.version = self._normalize_version(self.metadata.version) 2024-06-13T14:41:57,971 running dist_info 2024-06-13T14:41:57,978 creating /tmp/pip-modern-metadata-nizr_88v/vcf_subset.egg-info 2024-06-13T14:41:57,983 writing /tmp/pip-modern-metadata-nizr_88v/vcf_subset.egg-info/PKG-INFO 2024-06-13T14:41:57,987 writing dependency_links to /tmp/pip-modern-metadata-nizr_88v/vcf_subset.egg-info/dependency_links.txt 2024-06-13T14:41:57,989 writing top-level names to /tmp/pip-modern-metadata-nizr_88v/vcf_subset.egg-info/top_level.txt 2024-06-13T14:41:57,991 writing manifest file '/tmp/pip-modern-metadata-nizr_88v/vcf_subset.egg-info/SOURCES.txt' 2024-06-13T14:41:58,003 reading manifest file '/tmp/pip-modern-metadata-nizr_88v/vcf_subset.egg-info/SOURCES.txt' 2024-06-13T14:41:58,007 writing manifest file '/tmp/pip-modern-metadata-nizr_88v/vcf_subset.egg-info/SOURCES.txt' 2024-06-13T14:41:58,008 creating '/tmp/pip-modern-metadata-nizr_88v/vcf_subset-1.1.0.dist-info' 2024-06-13T14:41:58,177 Preparing metadata (pyproject.toml): finished with status 'done' 2024-06-13T14:41:58,181 Source in /tmp/pip-wheel-iwk81riz/vcf-subset_aff7cb8dd2af4df5a99e813dc16b3840 has version 1.1.0, which satisfies requirement vcf-subset==1.1.0 from https://files.pythonhosted.org/packages/e3/f0/fbedfe1b6255872b0ef4964143fd9f7c196fda57a7912dd025b7c7c6b67e/vcf_subset-1.1.0.tar.gz 2024-06-13T14:41:58,182 Removed vcf-subset==1.1.0 from https://files.pythonhosted.org/packages/e3/f0/fbedfe1b6255872b0ef4964143fd9f7c196fda57a7912dd025b7c7c6b67e/vcf_subset-1.1.0.tar.gz from build tracker '/tmp/pip-build-tracker-p1x5cxxo' 2024-06-13T14:41:58,187 Created temporary directory: /tmp/pip-unpack-wy8pbjrw 2024-06-13T14:41:58,188 Created temporary directory: /tmp/pip-unpack-d6es1hdq 2024-06-13T14:41:58,190 Building wheels for collected packages: vcf-subset 2024-06-13T14:41:58,194 Created temporary directory: /tmp/pip-wheel-ufyomts3 2024-06-13T14:41:58,194 Destination directory: /tmp/pip-wheel-ufyomts3 2024-06-13T14:41:58,196 Building wheel for vcf-subset (pyproject.toml): started 2024-06-13T14:41:58,197 Running command Building wheel for vcf-subset (pyproject.toml) 2024-06-13T14:41:58,695 /tmp/pip-build-env-hh0dgbv4/overlay/local/lib/python3.11/dist-packages/setuptools/dist.py:318: InformationOnly: Normalizing 'v1.1.0' to '1.1.0' 2024-06-13T14:41:58,695 self.metadata.version = self._normalize_version(self.metadata.version) 2024-06-13T14:41:58,764 running bdist_wheel 2024-06-13T14:41:58,798 running build 2024-06-13T14:41:58,799 running build_ext 2024-06-13T14:41:58,806 building 'vcf_subset' extension 2024-06-13T14:41:58,807 creating build 2024-06-13T14:41:58,807 creating build/temp.linux-armv7l-cpython-311 2024-06-13T14:41:58,808 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVERSION_INFO=v1.1.0 -I/tmp/pip-build-env-hh0dgbv4/overlay/local/lib/python3.11/dist-packages/pybind11/include -I/usr/include/python3.11 -c vcf_subset.cpp -o build/temp.linux-armv7l-cpython-311/vcf_subset.o -fvisibility=hidden -g0 -std=c++2a -O3 2024-06-13T14:42:21,531 creating build/lib.linux-armv7l-cpython-311 2024-06-13T14:42:21,532 arm-linux-gnueabihf-g++ -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/vcf_subset.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/vcf_subset.cpython-311-arm-linux-gnueabihf.so 2024-06-13T14:42:21,792 installing to build/bdist.linux-armv7l/wheel 2024-06-13T14:42:21,793 running install 2024-06-13T14:42:21,817 running install_lib 2024-06-13T14:42:21,825 creating build/bdist.linux-armv7l 2024-06-13T14:42:21,826 creating build/bdist.linux-armv7l/wheel 2024-06-13T14:42:21,827 copying build/lib.linux-armv7l-cpython-311/vcf_subset.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel 2024-06-13T14:42:21,834 running install_egg_info 2024-06-13T14:42:21,855 running egg_info 2024-06-13T14:42:21,859 writing vcf_subset.egg-info/PKG-INFO 2024-06-13T14:42:21,862 writing dependency_links to vcf_subset.egg-info/dependency_links.txt 2024-06-13T14:42:21,864 writing top-level names to vcf_subset.egg-info/top_level.txt 2024-06-13T14:42:21,871 reading manifest file 'vcf_subset.egg-info/SOURCES.txt' 2024-06-13T14:42:21,874 writing manifest file 'vcf_subset.egg-info/SOURCES.txt' 2024-06-13T14:42:21,875 Copying vcf_subset.egg-info to build/bdist.linux-armv7l/wheel/vcf_subset-1.1.0-py3.11.egg-info 2024-06-13T14:42:21,885 running install_scripts 2024-06-13T14:42:21,931 creating build/bdist.linux-armv7l/wheel/vcf_subset-1.1.0.dist-info/WHEEL 2024-06-13T14:42:21,934 creating '/tmp/pip-wheel-ufyomts3/.tmp-u0a_bene/vcf_subset-1.1.0-cp311-cp311-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2024-06-13T14:42:21,966 adding 'vcf_subset.cpython-311-arm-linux-gnueabihf.so' 2024-06-13T14:42:21,970 adding 'vcf_subset-1.1.0.dist-info/METADATA' 2024-06-13T14:42:21,971 adding 'vcf_subset-1.1.0.dist-info/WHEEL' 2024-06-13T14:42:21,972 adding 'vcf_subset-1.1.0.dist-info/top_level.txt' 2024-06-13T14:42:21,973 adding 'vcf_subset-1.1.0.dist-info/RECORD' 2024-06-13T14:42:21,976 removing build/bdist.linux-armv7l/wheel 2024-06-13T14:42:22,094 Building wheel for vcf-subset (pyproject.toml): finished with status 'done' 2024-06-13T14:42:22,100 Created wheel for vcf-subset: filename=vcf_subset-1.1.0-cp311-cp311-linux_armv7l.whl size=66581 sha256=27666e9108370fcb2cb5ff8b60c17b5537e27e253e8b2a284952df7b6017ea58 2024-06-13T14:42:22,101 Stored in directory: /tmp/pip-ephem-wheel-cache-wxjyoyd2/wheels/f5/f5/7f/7e2037e14101fb84212daf58e674b5c77677c9dd5ad8d403c4 2024-06-13T14:42:22,110 Successfully built vcf-subset 2024-06-13T14:42:22,115 Removed build tracker: '/tmp/pip-build-tracker-p1x5cxxo'