2024-06-13T16:33:49,894 Created temporary directory: /tmp/pip-build-tracker-sik5a7it 2024-06-13T16:33:49,896 Initialized build tracking at /tmp/pip-build-tracker-sik5a7it 2024-06-13T16:33:49,896 Created build tracker: /tmp/pip-build-tracker-sik5a7it 2024-06-13T16:33:49,896 Entered build tracker: /tmp/pip-build-tracker-sik5a7it 2024-06-13T16:33:49,896 Created temporary directory: /tmp/pip-wheel-krycl2vb 2024-06-13T16:33:49,900 Created temporary directory: /tmp/pip-ephem-wheel-cache-5cybw_30 2024-06-13T16:33:49,924 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2024-06-13T16:33:49,928 2 location(s) to search for versions of vcf-subset: 2024-06-13T16:33:49,928 * https://pypi.org/simple/vcf-subset/ 2024-06-13T16:33:49,928 * https://www.piwheels.org/simple/vcf-subset/ 2024-06-13T16:33:49,929 Fetching project page and analyzing links: https://pypi.org/simple/vcf-subset/ 2024-06-13T16:33:49,929 Getting page https://pypi.org/simple/vcf-subset/ 2024-06-13T16:33:49,930 Found index url https://pypi.org/simple/ 2024-06-13T16:33:49,986 Fetched page https://pypi.org/simple/vcf-subset/ as application/vnd.pypi.simple.v1+json 2024-06-13T16:33:49,988 Found link https://files.pythonhosted.org/packages/68/e0/a1fc01739e6486be8b1c8d66cd54056d2b0e2d55ec49686b0b086aa204ac/vcf_subset-1.0.0.tar.gz (from https://pypi.org/simple/vcf-subset/) (requires-python:>=3.7), version: 1.0.0 2024-06-13T16:33:49,988 Found link https://files.pythonhosted.org/packages/e3/f0/fbedfe1b6255872b0ef4964143fd9f7c196fda57a7912dd025b7c7c6b67e/vcf_subset-1.1.0.tar.gz (from https://pypi.org/simple/vcf-subset/) (requires-python:>=3.7), version: 1.1.0 2024-06-13T16:33:49,989 Fetching project page and analyzing links: https://www.piwheels.org/simple/vcf-subset/ 2024-06-13T16:33:49,989 Getting page https://www.piwheels.org/simple/vcf-subset/ 2024-06-13T16:33:49,990 Found index url https://www.piwheels.org/simple/ 2024-06-13T16:33:50,078 Fetched page https://www.piwheels.org/simple/vcf-subset/ as text/html 2024-06-13T16:33:50,082 Skipping link: No binaries permitted for vcf-subset: https://www.piwheels.org/simple/vcf-subset/vcf_subset-1.1.0-cp311-cp311-linux_armv6l.whl#sha256=27666e9108370fcb2cb5ff8b60c17b5537e27e253e8b2a284952df7b6017ea58 (from https://www.piwheels.org/simple/vcf-subset/) (requires-python:>=3.7) 2024-06-13T16:33:50,082 Skipping link: No binaries permitted for vcf-subset: https://www.piwheels.org/simple/vcf-subset/vcf_subset-1.1.0-cp311-cp311-linux_armv7l.whl#sha256=27666e9108370fcb2cb5ff8b60c17b5537e27e253e8b2a284952df7b6017ea58 (from https://www.piwheels.org/simple/vcf-subset/) (requires-python:>=3.7) 2024-06-13T16:33:50,082 Skipping link: No binaries permitted for vcf-subset: https://www.piwheels.org/simple/vcf-subset/vcf_subset-1.1.0-cp37-cp37m-linux_armv6l.whl#sha256=6ea21e32ac1b6cd341f322f197e9f095963f14a4b6c41c7fa143f007ed87979c (from https://www.piwheels.org/simple/vcf-subset/) (requires-python:>=3.7) 2024-06-13T16:33:50,082 Skipping link: No binaries permitted for vcf-subset: https://www.piwheels.org/simple/vcf-subset/vcf_subset-1.1.0-cp37-cp37m-linux_armv7l.whl#sha256=6ea21e32ac1b6cd341f322f197e9f095963f14a4b6c41c7fa143f007ed87979c (from https://www.piwheels.org/simple/vcf-subset/) (requires-python:>=3.7) 2024-06-13T16:33:50,083 Skipping link: No binaries permitted for vcf-subset: https://www.piwheels.org/simple/vcf-subset/vcf_subset-1.0.0-cp311-cp311-linux_armv6l.whl#sha256=e7956e85d5e03de680a8edeef2acff3678245470c9bbb1fc9ff3019434d41f40 (from https://www.piwheels.org/simple/vcf-subset/) (requires-python:>=3.7) 2024-06-13T16:33:50,083 Skipping link: No binaries permitted for vcf-subset: https://www.piwheels.org/simple/vcf-subset/vcf_subset-1.0.0-cp311-cp311-linux_armv7l.whl#sha256=e7956e85d5e03de680a8edeef2acff3678245470c9bbb1fc9ff3019434d41f40 (from https://www.piwheels.org/simple/vcf-subset/) (requires-python:>=3.7) 2024-06-13T16:33:50,083 Skipping link: No binaries permitted for vcf-subset: https://www.piwheels.org/simple/vcf-subset/vcf_subset-1.0.0-cp37-cp37m-linux_armv6l.whl#sha256=ed66b8e17ec20bbbd6714454c632a74bdb56b24fc633bb68360bfe0097479faf (from https://www.piwheels.org/simple/vcf-subset/) (requires-python:>=3.7) 2024-06-13T16:33:50,083 Skipping link: No binaries permitted for vcf-subset: https://www.piwheels.org/simple/vcf-subset/vcf_subset-1.0.0-cp37-cp37m-linux_armv7l.whl#sha256=ed66b8e17ec20bbbd6714454c632a74bdb56b24fc633bb68360bfe0097479faf (from https://www.piwheels.org/simple/vcf-subset/) (requires-python:>=3.7) 2024-06-13T16:33:50,083 Skipping link: No binaries permitted for vcf-subset: https://www.piwheels.org/simple/vcf-subset/vcf_subset-1.0.0-cp39-cp39-linux_armv6l.whl#sha256=0798cb73a2a95eeb2ef976af580f57e7f81e9dd3558aa1140cd426052154500e (from https://www.piwheels.org/simple/vcf-subset/) (requires-python:>=3.7) 2024-06-13T16:33:50,084 Skipping link: No binaries permitted for vcf-subset: https://www.piwheels.org/simple/vcf-subset/vcf_subset-1.0.0-cp39-cp39-linux_armv7l.whl#sha256=0798cb73a2a95eeb2ef976af580f57e7f81e9dd3558aa1140cd426052154500e (from https://www.piwheels.org/simple/vcf-subset/) (requires-python:>=3.7) 2024-06-13T16:33:50,084 Skipping link: not a file: https://www.piwheels.org/simple/vcf-subset/ 2024-06-13T16:33:50,084 Skipping link: not a file: https://pypi.org/simple/vcf-subset/ 2024-06-13T16:33:50,101 Given no hashes to check 1 links for project 'vcf-subset': discarding no candidates 2024-06-13T16:33:50,119 Collecting vcf-subset==1.1.0 2024-06-13T16:33:50,121 Created temporary directory: /tmp/pip-unpack-8y8bsloi 2024-06-13T16:33:50,164 Downloading vcf_subset-1.1.0.tar.gz (2.6 kB) 2024-06-13T16:33:50,191 Added vcf-subset==1.1.0 from https://files.pythonhosted.org/packages/e3/f0/fbedfe1b6255872b0ef4964143fd9f7c196fda57a7912dd025b7c7c6b67e/vcf_subset-1.1.0.tar.gz to build tracker '/tmp/pip-build-tracker-sik5a7it' 2024-06-13T16:33:50,195 Created temporary directory: /tmp/pip-build-env-ff9g_7uk 2024-06-13T16:33:50,205 Installing build dependencies: started 2024-06-13T16:33:50,206 Running command pip subprocess to install build dependencies 2024-06-13T16:33:51,411 Using pip 24.0 from /usr/local/lib/python3.9/dist-packages/pip (python 3.9) 2024-06-13T16:33:51,956 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2024-06-13T16:33:53,479 Collecting setuptools>=42 2024-06-13T16:33:53,498 Using cached https://www.piwheels.org/simple/setuptools/setuptools-70.0.0-py3-none-any.whl (863 kB) 2024-06-13T16:33:53,701 Collecting pybind11>=2.10.0 2024-06-13T16:33:53,717 Using cached https://www.piwheels.org/simple/pybind11/pybind11-2.12.0-py3-none-any.whl (234 kB) 2024-06-13T16:33:56,058 Installing collected packages: setuptools, pybind11 2024-06-13T16:33:58,399 Creating /tmp/pip-build-env-ff9g_7uk/overlay/bin 2024-06-13T16:33:58,401 changing mode of /tmp/pip-build-env-ff9g_7uk/overlay/bin/pybind11-config to 755 2024-06-13T16:33:58,414 Successfully installed pybind11-2.12.0 setuptools-70.0.0 2024-06-13T16:33:58,869 Installing build dependencies: finished with status 'done' 2024-06-13T16:33:58,873 Getting requirements to build wheel: started 2024-06-13T16:33:58,874 Running command Getting requirements to build wheel 2024-06-13T16:33:59,418 /tmp/pip-build-env-ff9g_7uk/overlay/lib/python3.9/site-packages/setuptools/dist.py:318: InformationOnly: Normalizing 'v1.1.0' to '1.1.0' 2024-06-13T16:33:59,419 self.metadata.version = self._normalize_version(self.metadata.version) 2024-06-13T16:33:59,457 running egg_info 2024-06-13T16:33:59,464 writing vcf_subset.egg-info/PKG-INFO 2024-06-13T16:33:59,467 writing dependency_links to vcf_subset.egg-info/dependency_links.txt 2024-06-13T16:33:59,469 writing top-level names to vcf_subset.egg-info/top_level.txt 2024-06-13T16:33:59,483 reading manifest file 'vcf_subset.egg-info/SOURCES.txt' 2024-06-13T16:33:59,487 writing manifest file 'vcf_subset.egg-info/SOURCES.txt' 2024-06-13T16:33:59,557 Getting requirements to build wheel: finished with status 'done' 2024-06-13T16:33:59,568 Installing backend dependencies: started 2024-06-13T16:33:59,569 Running command pip subprocess to install backend dependencies 2024-06-13T16:34:00,759 Using pip 24.0 from /usr/local/lib/python3.9/dist-packages/pip (python 3.9) 2024-06-13T16:34:01,311 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2024-06-13T16:34:01,658 Collecting wheel 2024-06-13T16:34:01,674 Using cached https://www.piwheels.org/simple/wheel/wheel-0.43.0-py3-none-any.whl (65 kB) 2024-06-13T16:34:03,695 Installing collected packages: wheel 2024-06-13T16:34:03,916 Creating /tmp/pip-build-env-ff9g_7uk/normal/bin 2024-06-13T16:34:03,918 changing mode of /tmp/pip-build-env-ff9g_7uk/normal/bin/wheel to 755 2024-06-13T16:34:03,931 Successfully installed wheel-0.43.0 2024-06-13T16:34:04,327 Installing backend dependencies: finished with status 'done' 2024-06-13T16:34:04,329 Created temporary directory: /tmp/pip-modern-metadata-_r7mvrqj 2024-06-13T16:34:04,332 Preparing metadata (pyproject.toml): started 2024-06-13T16:34:04,333 Running command Preparing metadata (pyproject.toml) 2024-06-13T16:34:04,871 /tmp/pip-build-env-ff9g_7uk/overlay/lib/python3.9/site-packages/setuptools/dist.py:318: InformationOnly: Normalizing 'v1.1.0' to '1.1.0' 2024-06-13T16:34:04,871 self.metadata.version = self._normalize_version(self.metadata.version) 2024-06-13T16:34:04,915 running dist_info 2024-06-13T16:34:04,924 creating /tmp/pip-modern-metadata-_r7mvrqj/vcf_subset.egg-info 2024-06-13T16:34:04,929 writing /tmp/pip-modern-metadata-_r7mvrqj/vcf_subset.egg-info/PKG-INFO 2024-06-13T16:34:04,932 writing dependency_links to /tmp/pip-modern-metadata-_r7mvrqj/vcf_subset.egg-info/dependency_links.txt 2024-06-13T16:34:04,934 writing top-level names to /tmp/pip-modern-metadata-_r7mvrqj/vcf_subset.egg-info/top_level.txt 2024-06-13T16:34:04,936 writing manifest file '/tmp/pip-modern-metadata-_r7mvrqj/vcf_subset.egg-info/SOURCES.txt' 2024-06-13T16:34:04,949 reading manifest file '/tmp/pip-modern-metadata-_r7mvrqj/vcf_subset.egg-info/SOURCES.txt' 2024-06-13T16:34:04,953 writing manifest file '/tmp/pip-modern-metadata-_r7mvrqj/vcf_subset.egg-info/SOURCES.txt' 2024-06-13T16:34:04,954 creating '/tmp/pip-modern-metadata-_r7mvrqj/vcf_subset-1.1.0.dist-info' 2024-06-13T16:34:05,107 Preparing metadata (pyproject.toml): finished with status 'done' 2024-06-13T16:34:05,113 Source in /tmp/pip-wheel-krycl2vb/vcf-subset_09c5a403327b47349991897177c7e505 has version 1.1.0, which satisfies requirement vcf-subset==1.1.0 from https://files.pythonhosted.org/packages/e3/f0/fbedfe1b6255872b0ef4964143fd9f7c196fda57a7912dd025b7c7c6b67e/vcf_subset-1.1.0.tar.gz 2024-06-13T16:34:05,114 Removed vcf-subset==1.1.0 from https://files.pythonhosted.org/packages/e3/f0/fbedfe1b6255872b0ef4964143fd9f7c196fda57a7912dd025b7c7c6b67e/vcf_subset-1.1.0.tar.gz from build tracker '/tmp/pip-build-tracker-sik5a7it' 2024-06-13T16:34:05,120 Created temporary directory: /tmp/pip-unpack-pw6pkhed 2024-06-13T16:34:05,121 Created temporary directory: /tmp/pip-unpack-p4el2wav 2024-06-13T16:34:05,123 Building wheels for collected packages: vcf-subset 2024-06-13T16:34:05,127 Created temporary directory: /tmp/pip-wheel-tezg620x 2024-06-13T16:34:05,127 Destination directory: /tmp/pip-wheel-tezg620x 2024-06-13T16:34:05,129 Building wheel for vcf-subset (pyproject.toml): started 2024-06-13T16:34:05,130 Running command Building wheel for vcf-subset (pyproject.toml) 2024-06-13T16:34:05,638 /tmp/pip-build-env-ff9g_7uk/overlay/lib/python3.9/site-packages/setuptools/dist.py:318: InformationOnly: Normalizing 'v1.1.0' to '1.1.0' 2024-06-13T16:34:05,638 self.metadata.version = self._normalize_version(self.metadata.version) 2024-06-13T16:34:05,708 running bdist_wheel 2024-06-13T16:34:05,745 running build 2024-06-13T16:34:05,745 running build_ext 2024-06-13T16:34:05,753 building 'vcf_subset' extension 2024-06-13T16:34:05,754 creating build 2024-06-13T16:34:05,754 creating build/temp.linux-armv7l-cpython-39 2024-06-13T16:34:05,755 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVERSION_INFO=v1.1.0 -I/tmp/pip-build-env-ff9g_7uk/overlay/lib/python3.9/site-packages/pybind11/include -I/usr/include/python3.9 -c vcf_subset.cpp -o build/temp.linux-armv7l-cpython-39/vcf_subset.o -fvisibility=hidden -g0 -std=c++2a -O3 2024-06-13T16:34:25,131 creating build/lib.linux-armv7l-cpython-39 2024-06-13T16:34:25,131 arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/vcf_subset.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/vcf_subset.cpython-39-arm-linux-gnueabihf.so 2024-06-13T16:34:25,425 installing to build/bdist.linux-armv7l/wheel 2024-06-13T16:34:25,425 running install 2024-06-13T16:34:25,451 running install_lib 2024-06-13T16:34:25,459 creating build/bdist.linux-armv7l 2024-06-13T16:34:25,459 creating build/bdist.linux-armv7l/wheel 2024-06-13T16:34:25,460 copying build/lib.linux-armv7l-cpython-39/vcf_subset.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel 2024-06-13T16:34:25,465 running install_egg_info 2024-06-13T16:34:25,476 running egg_info 2024-06-13T16:34:25,480 writing vcf_subset.egg-info/PKG-INFO 2024-06-13T16:34:25,483 writing dependency_links to vcf_subset.egg-info/dependency_links.txt 2024-06-13T16:34:25,485 writing top-level names to vcf_subset.egg-info/top_level.txt 2024-06-13T16:34:25,492 reading manifest file 'vcf_subset.egg-info/SOURCES.txt' 2024-06-13T16:34:25,496 writing manifest file 'vcf_subset.egg-info/SOURCES.txt' 2024-06-13T16:34:25,497 Copying vcf_subset.egg-info to build/bdist.linux-armv7l/wheel/vcf_subset-1.1.0-py3.9.egg-info 2024-06-13T16:34:25,506 running install_scripts 2024-06-13T16:34:25,561 creating build/bdist.linux-armv7l/wheel/vcf_subset-1.1.0.dist-info/WHEEL 2024-06-13T16:34:25,564 creating '/tmp/pip-wheel-tezg620x/.tmp-zdmkc6gh/vcf_subset-1.1.0-cp39-cp39-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2024-06-13T16:34:25,614 adding 'vcf_subset.cpython-39-arm-linux-gnueabihf.so' 2024-06-13T16:34:25,619 adding 'vcf_subset-1.1.0.dist-info/METADATA' 2024-06-13T16:34:25,620 adding 'vcf_subset-1.1.0.dist-info/WHEEL' 2024-06-13T16:34:25,621 adding 'vcf_subset-1.1.0.dist-info/top_level.txt' 2024-06-13T16:34:25,623 adding 'vcf_subset-1.1.0.dist-info/RECORD' 2024-06-13T16:34:25,626 removing build/bdist.linux-armv7l/wheel 2024-06-13T16:34:25,713 Building wheel for vcf-subset (pyproject.toml): finished with status 'done' 2024-06-13T16:34:25,719 Created wheel for vcf-subset: filename=vcf_subset-1.1.0-cp39-cp39-linux_armv7l.whl size=64285 sha256=ff31419ba866cd63d7f3ac3c33502b694baaadda166815a90c9f64798d429b57 2024-06-13T16:34:25,720 Stored in directory: /tmp/pip-ephem-wheel-cache-5cybw_30/wheels/cf/ef/89/c6f7c2e89bd9aac4ac7af5ba30e7cd5a340a730d7c67186cd8 2024-06-13T16:34:25,730 Successfully built vcf-subset 2024-06-13T16:34:25,735 Removed build tracker: '/tmp/pip-build-tracker-sik5a7it'