2024-06-17T06:40:30,446 Created temporary directory: /tmp/pip-build-tracker-lofvvmmr 2024-06-17T06:40:30,447 Initialized build tracking at /tmp/pip-build-tracker-lofvvmmr 2024-06-17T06:40:30,448 Created build tracker: /tmp/pip-build-tracker-lofvvmmr 2024-06-17T06:40:30,448 Entered build tracker: /tmp/pip-build-tracker-lofvvmmr 2024-06-17T06:40:30,449 Created temporary directory: /tmp/pip-wheel-v5p2zmt9 2024-06-17T06:40:30,452 Created temporary directory: /tmp/pip-ephem-wheel-cache-nwtma8s7 2024-06-17T06:40:30,483 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2024-06-17T06:40:30,486 2 location(s) to search for versions of funvip: 2024-06-17T06:40:30,486 * https://pypi.org/simple/funvip/ 2024-06-17T06:40:30,486 * https://www.piwheels.org/simple/funvip/ 2024-06-17T06:40:30,487 Fetching project page and analyzing links: https://pypi.org/simple/funvip/ 2024-06-17T06:40:30,488 Getting page https://pypi.org/simple/funvip/ 2024-06-17T06:40:30,489 Found index url https://pypi.org/simple/ 2024-06-17T06:40:30,700 Fetched page https://pypi.org/simple/funvip/ as application/vnd.pypi.simple.v1+json 2024-06-17T06:40:30,704 Skipping link: No binaries permitted for funvip: https://files.pythonhosted.org/packages/a0/b5/0d65eb17b155c93a7022978aa4521fa29d234a099409863a5b08a8e7e122/FunVIP-0.3.20-py3-none-any.whl (from https://pypi.org/simple/funvip/) (requires-python:<3.13,>3.8) 2024-06-17T06:40:30,705 Found link https://files.pythonhosted.org/packages/9b/df/34c36f5642250c040b8ef6fd2f6c11699fe52dca76ef2697e566a4101185/funvip-0.3.20.tar.gz (from https://pypi.org/simple/funvip/) (requires-python:<3.13,>3.8), version: 0.3.20 2024-06-17T06:40:30,706 Skipping link: No binaries permitted for funvip: https://files.pythonhosted.org/packages/fe/66/8319c3a6cd421da1f2a7febf8bc5042089d0f7480d31d988b9dc02b348cc/FunVIP-0.3.21-py3-none-any.whl (from https://pypi.org/simple/funvip/) (requires-python:<3.13,>3.8) 2024-06-17T06:40:30,706 Found link https://files.pythonhosted.org/packages/15/a7/1458c95468d22392f0d1f5366422c5e3325b2b73fb00ead5645ce60aefd3/funvip-0.3.21.tar.gz (from https://pypi.org/simple/funvip/) (requires-python:<3.13,>3.8), version: 0.3.21 2024-06-17T06:40:30,707 Skipping link: No binaries permitted for funvip: https://files.pythonhosted.org/packages/09/25/d7edd31afd3b5a9c32fd19315aa55fe62eeedbb6ad8efd581f1197da518e/FunVIP-0.3.22-py3-none-any.whl (from https://pypi.org/simple/funvip/) (requires-python:<3.13,>3.8) 2024-06-17T06:40:30,708 Found link https://files.pythonhosted.org/packages/77/eb/6c02451b239042d60f03c7ed10e91d4c53c4e227d2eb1d49aa8b2246a973/funvip-0.3.22.tar.gz (from https://pypi.org/simple/funvip/) (requires-python:<3.13,>3.8), version: 0.3.22 2024-06-17T06:40:30,709 Skipping link: No binaries permitted for funvip: https://files.pythonhosted.org/packages/0b/b3/c6fe7d14fc8dd1ab7b79c3824e98b5ac7b9a6cc4dc3f5af5040acc7e6982/FunVIP-0.3.22.1-py3-none-any.whl (from https://pypi.org/simple/funvip/) (requires-python:<3.13,>3.8) 2024-06-17T06:40:30,710 Found link https://files.pythonhosted.org/packages/a4/d6/c50c9574e9a58a3b2fb79c9e42d1b46e11aab893e33372d4039e8111980b/funvip-0.3.22.1.tar.gz (from https://pypi.org/simple/funvip/) (requires-python:<3.13,>3.8), version: 0.3.22.1 2024-06-17T06:40:30,711 Skipping link: No binaries permitted for funvip: https://files.pythonhosted.org/packages/92/a9/25c0f9148aad62a1e81b3d5791f16c6527a5acbfb6d07aa5e7f1b4db6f5b/FunVIP-0.3.22.2-py3-none-any.whl (from https://pypi.org/simple/funvip/) (requires-python:<3.13,>3.8) 2024-06-17T06:40:30,712 Found link https://files.pythonhosted.org/packages/16/49/7c7f5db94ce39ed308eb78ce6671abafdd86694fb3a62ff365e528b2cdd1/funvip-0.3.22.2.tar.gz (from https://pypi.org/simple/funvip/) (requires-python:<3.13,>3.8), version: 0.3.22.2 2024-06-17T06:40:30,713 Skipping link: No binaries permitted for funvip: https://files.pythonhosted.org/packages/57/9b/9bbb4c6a048de1865a8464effde71c673ad3f560af23f9c04b8a0deb12a4/FunVIP-0.3.23-py3-none-any.whl (from https://pypi.org/simple/funvip/) (requires-python:<3.13,>3.8) 2024-06-17T06:40:30,713 Found link https://files.pythonhosted.org/packages/06/a5/2dca249bf589eb5c8c52a4d014ae3b26d08983033bb4cc8f667da2c6b100/funvip-0.3.23.tar.gz (from https://pypi.org/simple/funvip/) (requires-python:<3.13,>3.8), version: 0.3.23 2024-06-17T06:40:30,714 Skipping link: No binaries permitted for funvip: https://files.pythonhosted.org/packages/31/20/19919daea66b3d909f06edf0b470776becbd8a5b4171249c4560aacd2ff0/FunVIP-0.3.23.1-py3-none-any.whl (from https://pypi.org/simple/funvip/) (requires-python:<3.13,>3.8) 2024-06-17T06:40:30,716 Found link https://files.pythonhosted.org/packages/c2/60/de45769ce564005f51a8ffdf9f13f815185f852d91809b23dcc3569522ce/funvip-0.3.23.1.tar.gz (from https://pypi.org/simple/funvip/) (requires-python:<3.13,>3.8), version: 0.3.23.1 2024-06-17T06:40:30,717 Fetching project page and analyzing links: https://www.piwheels.org/simple/funvip/ 2024-06-17T06:40:30,717 Getting page https://www.piwheels.org/simple/funvip/ 2024-06-17T06:40:30,718 Found index url https://www.piwheels.org/simple/ 2024-06-17T06:40:30,921 Fetched page https://www.piwheels.org/simple/funvip/ as text/html 2024-06-17T06:40:30,924 Skipping link: No binaries permitted for funvip: https://www.piwheels.org/simple/funvip/FunVIP-0.3.23-py3-none-any.whl#sha256=f853a145c71e289d7f3e06b321116cdccf421469a1e9942b6c447fe7daa20a44 (from https://www.piwheels.org/simple/funvip/) (requires-python:<3.13,>3.8) 2024-06-17T06:40:30,925 Skipping link: No binaries permitted for funvip: https://www.piwheels.org/simple/funvip/FunVIP-0.3.22.2-py3-none-any.whl#sha256=8c5e476d94a5e4d4150a89c277d7da56ad82f28db2654cc57194f8614fa8a73c (from https://www.piwheels.org/simple/funvip/) (requires-python:<3.13,>3.8) 2024-06-17T06:40:30,925 Skipping link: No binaries permitted for funvip: https://www.piwheels.org/simple/funvip/FunVIP-0.3.22.1-py3-none-any.whl#sha256=6464c8044637848420c9213e543ed7b9357ce36d794c79a28b76c20cdb04226f (from https://www.piwheels.org/simple/funvip/) (requires-python:<3.13,>3.8) 2024-06-17T06:40:30,926 Skipping link: No binaries permitted for funvip: https://www.piwheels.org/simple/funvip/FunVIP-0.3.22-py3-none-any.whl#sha256=dd2db50f85481b3ce82217522dd0cf0afb20263cc65856f59e25fce5d1ce09d1 (from https://www.piwheels.org/simple/funvip/) (requires-python:<3.13,>3.8) 2024-06-17T06:40:30,926 Skipping link: No binaries permitted for funvip: https://www.piwheels.org/simple/funvip/FunVIP-0.3.21-py3-none-any.whl#sha256=e1863d6683eb41c991cce86262ef477d12ad652320dfb6fa0f5b9d184d7c42c6 (from https://www.piwheels.org/simple/funvip/) (requires-python:<3.13,>3.8) 2024-06-17T06:40:30,927 Skipping link: No binaries permitted for funvip: https://www.piwheels.org/simple/funvip/FunVIP-0.3.20-py3-none-any.whl#sha256=c93795ba7644b586c23cea4f5a6c421915b36ff5f5be700ee1a37d7857f03e3b (from https://www.piwheels.org/simple/funvip/) (requires-python:<3.13,>3.8) 2024-06-17T06:40:30,928 Skipping link: not a file: https://www.piwheels.org/simple/funvip/ 2024-06-17T06:40:30,929 Skipping link: not a file: https://pypi.org/simple/funvip/ 2024-06-17T06:40:30,949 Given no hashes to check 1 links for project 'funvip': discarding no candidates 2024-06-17T06:40:30,968 Collecting funvip==0.3.23.1 2024-06-17T06:40:30,971 Created temporary directory: /tmp/pip-unpack-e3zbazrq 2024-06-17T06:40:31,278 Downloading funvip-0.3.23.1.tar.gz (59.5 MB) 2024-06-17T06:40:45,241 Added funvip==0.3.23.1 from https://files.pythonhosted.org/packages/c2/60/de45769ce564005f51a8ffdf9f13f815185f852d91809b23dcc3569522ce/funvip-0.3.23.1.tar.gz to build tracker '/tmp/pip-build-tracker-lofvvmmr' 2024-06-17T06:40:45,247 Created temporary directory: /tmp/pip-build-env-7nusnufw 2024-06-17T06:40:45,251 Installing build dependencies: started 2024-06-17T06:40:45,253 Running command pip subprocess to install build dependencies 2024-06-17T06:40:46,429 Using pip 24.0 from /home/piwheels/.local/lib/python3.11/site-packages/pip (python 3.11) 2024-06-17T06:40:46,952 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2024-06-17T06:40:48,620 Collecting setuptools 2024-06-17T06:40:48,642 Using cached https://www.piwheels.org/simple/setuptools/setuptools-70.0.0-py3-none-any.whl (863 kB) 2024-06-17T06:40:48,842 Collecting setuptools-ext 2024-06-17T06:40:48,870 Using cached https://www.piwheels.org/simple/setuptools-ext/setuptools_ext-0.9-py3-none-any.whl (7.2 kB) 2024-06-17T06:40:49,075 Collecting wheel 2024-06-17T06:40:49,089 Using cached https://www.piwheels.org/simple/wheel/wheel-0.43.0-py3-none-any.whl (65 kB) 2024-06-17T06:40:52,147 Installing collected packages: wheel, setuptools, setuptools-ext 2024-06-17T06:40:52,376 Creating /tmp/pip-build-env-7nusnufw/overlay/local/bin 2024-06-17T06:40:52,378 changing mode of /tmp/pip-build-env-7nusnufw/overlay/local/bin/wheel to 755 2024-06-17T06:40:54,812 Successfully installed setuptools-70.0.0 setuptools-ext-0.9 wheel-0.43.0 2024-06-17T06:40:55,302 Installing build dependencies: finished with status 'done' 2024-06-17T06:40:55,305 Getting requirements to build wheel: started 2024-06-17T06:40:55,306 Running command Getting requirements to build wheel 2024-06-17T06:40:56,184 running egg_info 2024-06-17T06:40:56,188 writing FunVIP.egg-info/PKG-INFO 2024-06-17T06:40:56,192 writing dependency_links to FunVIP.egg-info/dependency_links.txt 2024-06-17T06:40:56,195 writing entry points to FunVIP.egg-info/entry_points.txt 2024-06-17T06:40:56,197 writing requirements to FunVIP.egg-info/requires.txt 2024-06-17T06:40:56,198 writing top-level names to FunVIP.egg-info/top_level.txt 2024-06-17T06:40:56,224 reading manifest file 'FunVIP.egg-info/SOURCES.txt' 2024-06-17T06:40:56,238 reading manifest template 'MANIFEST.in' 2024-06-17T06:40:56,330 adding license file 'LICENSE' 2024-06-17T06:40:56,341 writing manifest file 'FunVIP.egg-info/SOURCES.txt' 2024-06-17T06:40:56,468 Getting requirements to build wheel: finished with status 'done' 2024-06-17T06:40:56,487 Created temporary directory: /tmp/pip-modern-metadata-0qudewhg 2024-06-17T06:40:56,490 Preparing metadata (pyproject.toml): started 2024-06-17T06:40:56,492 Running command Preparing metadata (pyproject.toml) 2024-06-17T06:40:57,314 running dist_info 2024-06-17T06:40:57,319 creating /tmp/pip-modern-metadata-0qudewhg/FunVIP.egg-info 2024-06-17T06:40:57,323 writing /tmp/pip-modern-metadata-0qudewhg/FunVIP.egg-info/PKG-INFO 2024-06-17T06:40:57,326 writing dependency_links to /tmp/pip-modern-metadata-0qudewhg/FunVIP.egg-info/dependency_links.txt 2024-06-17T06:40:57,329 writing entry points to /tmp/pip-modern-metadata-0qudewhg/FunVIP.egg-info/entry_points.txt 2024-06-17T06:40:57,331 writing requirements to /tmp/pip-modern-metadata-0qudewhg/FunVIP.egg-info/requires.txt 2024-06-17T06:40:57,332 writing top-level names to /tmp/pip-modern-metadata-0qudewhg/FunVIP.egg-info/top_level.txt 2024-06-17T06:40:57,334 writing manifest file '/tmp/pip-modern-metadata-0qudewhg/FunVIP.egg-info/SOURCES.txt' 2024-06-17T06:40:57,357 reading manifest file '/tmp/pip-modern-metadata-0qudewhg/FunVIP.egg-info/SOURCES.txt' 2024-06-17T06:40:57,359 reading manifest template 'MANIFEST.in' 2024-06-17T06:40:57,446 adding license file 'LICENSE' 2024-06-17T06:40:57,455 writing manifest file '/tmp/pip-modern-metadata-0qudewhg/FunVIP.egg-info/SOURCES.txt' 2024-06-17T06:40:57,456 creating '/tmp/pip-modern-metadata-0qudewhg/FunVIP-0.3.23.1.dist-info' 2024-06-17T06:40:57,616 Preparing metadata (pyproject.toml): finished with status 'done' 2024-06-17T06:40:57,621 Source in /tmp/pip-wheel-v5p2zmt9/funvip_91151d4d84c945d995dfef63e09c546b has version 0.3.23.1, which satisfies requirement funvip==0.3.23.1 from https://files.pythonhosted.org/packages/c2/60/de45769ce564005f51a8ffdf9f13f815185f852d91809b23dcc3569522ce/funvip-0.3.23.1.tar.gz 2024-06-17T06:40:57,622 Removed funvip==0.3.23.1 from https://files.pythonhosted.org/packages/c2/60/de45769ce564005f51a8ffdf9f13f815185f852d91809b23dcc3569522ce/funvip-0.3.23.1.tar.gz from build tracker '/tmp/pip-build-tracker-lofvvmmr' 2024-06-17T06:40:57,627 Created temporary directory: /tmp/pip-unpack-jv7di8l8 2024-06-17T06:40:57,628 Created temporary directory: /tmp/pip-unpack-oxaiycll 2024-06-17T06:40:57,654 Building wheels for collected packages: funvip 2024-06-17T06:40:57,659 Created temporary directory: /tmp/pip-wheel-i4shxpst 2024-06-17T06:40:57,660 Destination directory: /tmp/pip-wheel-i4shxpst 2024-06-17T06:40:57,662 Building wheel for funvip (pyproject.toml): started 2024-06-17T06:40:57,663 Running command Building wheel for funvip (pyproject.toml) 2024-06-17T06:40:58,435 running bdist_wheel 2024-06-17T06:40:58,453 running build 2024-06-17T06:40:58,453 running build_py 2024-06-17T06:40:58,459 creating build 2024-06-17T06:40:58,460 creating build/lib 2024-06-17T06:40:58,461 creating build/lib/funvip 2024-06-17T06:40:58,462 copying funvip/FunVIP_GUI.py -> build/lib/funvip 2024-06-17T06:40:58,465 copying funvip/__init__.py -> build/lib/funvip 2024-06-17T06:40:58,466 copying funvip/main.py -> build/lib/funvip 2024-06-17T06:40:58,469 creating build/lib/funvip/data 2024-06-17T06:40:58,470 copying funvip/data/__init__.py -> build/lib/funvip/data 2024-06-17T06:40:58,472 creating build/lib/funvip/external 2024-06-17T06:40:58,473 copying funvip/external/__init__.py -> build/lib/funvip/external 2024-06-17T06:40:58,476 creating build/lib/funvip/src 2024-06-17T06:40:58,477 copying funvip/src/version.py -> build/lib/funvip/src 2024-06-17T06:40:58,479 copying funvip/src/ncbi.py -> build/lib/funvip/src 2024-06-17T06:40:58,482 copying funvip/src/cluster.py -> build/lib/funvip/src 2024-06-17T06:40:58,484 copying funvip/src/concatenate.py -> build/lib/funvip/src 2024-06-17T06:40:58,486 copying funvip/src/opt_generator.py -> build/lib/funvip/src 2024-06-17T06:40:58,488 copying funvip/src/validate_option.py -> build/lib/funvip/src 2024-06-17T06:40:58,491 copying funvip/src/validate_input.py -> build/lib/funvip/src 2024-06-17T06:40:58,494 copying funvip/src/validation.py -> build/lib/funvip/src 2024-06-17T06:40:58,496 copying funvip/src/search.py -> build/lib/funvip/src 2024-06-17T06:40:58,499 copying funvip/src/trim.py -> build/lib/funvip/src 2024-06-17T06:40:58,501 copying funvip/src/tool.py -> build/lib/funvip/src 2024-06-17T06:40:58,504 copying funvip/src/reporter.py -> build/lib/funvip/src 2024-06-17T06:40:58,507 copying funvip/src/logger.py -> build/lib/funvip/src 2024-06-17T06:40:58,509 copying funvip/src/__init__.py -> build/lib/funvip/src 2024-06-17T06:40:58,510 copying funvip/src/dataset.py -> build/lib/funvip/src 2024-06-17T06:40:58,514 copying funvip/src/command.py -> build/lib/funvip/src 2024-06-17T06:40:58,516 copying funvip/src/logics.py -> build/lib/funvip/src 2024-06-17T06:40:58,518 copying funvip/src/hasher.py -> build/lib/funvip/src 2024-06-17T06:40:58,520 copying funvip/src/save.py -> build/lib/funvip/src 2024-06-17T06:40:58,522 copying funvip/src/modeltest.py -> build/lib/funvip/src 2024-06-17T06:40:58,524 copying funvip/src/tree.py -> build/lib/funvip/src 2024-06-17T06:40:58,527 copying funvip/src/tree_interpretation.py -> build/lib/funvip/src 2024-06-17T06:40:58,530 copying funvip/src/align.py -> build/lib/funvip/src 2024-06-17T06:40:58,532 copying funvip/src/initialize.py -> build/lib/funvip/src 2024-06-17T06:40:58,535 copying funvip/src/tree_interpretation_pipe.py -> build/lib/funvip/src 2024-06-17T06:40:58,538 copying funvip/src/ext.py -> build/lib/funvip/src 2024-06-17T06:40:58,540 running egg_info 2024-06-17T06:40:58,544 writing FunVIP.egg-info/PKG-INFO 2024-06-17T06:40:58,548 writing dependency_links to FunVIP.egg-info/dependency_links.txt 2024-06-17T06:40:58,550 writing entry points to FunVIP.egg-info/entry_points.txt 2024-06-17T06:40:58,552 writing requirements to FunVIP.egg-info/requires.txt 2024-06-17T06:40:58,553 writing top-level names to FunVIP.egg-info/top_level.txt 2024-06-17T06:40:58,570 reading manifest file 'FunVIP.egg-info/SOURCES.txt' 2024-06-17T06:40:58,577 reading manifest template 'MANIFEST.in' 2024-06-17T06:40:58,658 adding license file 'LICENSE' 2024-06-17T06:40:58,669 writing manifest file 'FunVIP.egg-info/SOURCES.txt' 2024-06-17T06:40:58,673 /tmp/pip-build-env-7nusnufw/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'funvip.external.BLAST_Windows' is absent from the `packages` configuration. 2024-06-17T06:40:58,673 !! 2024-06-17T06:40:58,674 ******************************************************************************** 2024-06-17T06:40:58,674 ############################ 2024-06-17T06:40:58,675 # Package would be ignored # 2024-06-17T06:40:58,675 ############################ 2024-06-17T06:40:58,676 Python recognizes 'funvip.external.BLAST_Windows' as an importable package[^1], 2024-06-17T06:40:58,676 but it is absent from setuptools' `packages` configuration. 2024-06-17T06:40:58,677 This leads to an ambiguous overall configuration. If you want to distribute this 2024-06-17T06:40:58,677 package, please make sure that 'funvip.external.BLAST_Windows' is explicitly added 2024-06-17T06:40:58,678 to the `packages` configuration field. 2024-06-17T06:40:58,678 Alternatively, you can also rely on setuptools' discovery methods 2024-06-17T06:40:58,679 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-06-17T06:40:58,679 instead of `find_packages(...)`/`find:`). 2024-06-17T06:40:58,680 You can read more about "package discovery" on setuptools documentation page: 2024-06-17T06:40:58,681 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-06-17T06:40:58,682 If you don't want 'funvip.external.BLAST_Windows' to be distributed and are 2024-06-17T06:40:58,683 already explicitly excluding 'funvip.external.BLAST_Windows' via 2024-06-17T06:40:58,683 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-06-17T06:40:58,683 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-06-17T06:40:58,684 combination with a more fine grained `package-data` configuration. 2024-06-17T06:40:58,685 You can read more about "package data files" on setuptools documentation page: 2024-06-17T06:40:58,686 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-06-17T06:40:58,688 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-06-17T06:40:58,689 even if it does not contain any `.py` files. 2024-06-17T06:40:58,689 On the other hand, currently there is no concept of package data 2024-06-17T06:40:58,690 directory, all directories are treated like packages. 2024-06-17T06:40:58,691 ******************************************************************************** 2024-06-17T06:40:58,692 !! 2024-06-17T06:40:58,692 check.warn(importable) 2024-06-17T06:40:58,693 /tmp/pip-build-env-7nusnufw/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'funvip.external.BLAST_Windows.bin' is absent from the `packages` configuration. 2024-06-17T06:40:58,694 !! 2024-06-17T06:40:58,695 ******************************************************************************** 2024-06-17T06:40:58,695 ############################ 2024-06-17T06:40:58,696 # Package would be ignored # 2024-06-17T06:40:58,696 ############################ 2024-06-17T06:40:58,697 Python recognizes 'funvip.external.BLAST_Windows.bin' as an importable package[^1], 2024-06-17T06:40:58,697 but it is absent from setuptools' `packages` configuration. 2024-06-17T06:40:58,699 This leads to an ambiguous overall configuration. If you want to distribute this 2024-06-17T06:40:58,699 package, please make sure that 'funvip.external.BLAST_Windows.bin' is explicitly added 2024-06-17T06:40:58,700 to the `packages` configuration field. 2024-06-17T06:40:58,701 Alternatively, you can also rely on setuptools' discovery methods 2024-06-17T06:40:58,701 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-06-17T06:40:58,702 instead of `find_packages(...)`/`find:`). 2024-06-17T06:40:58,703 You can read more about "package discovery" on setuptools documentation page: 2024-06-17T06:40:58,704 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-06-17T06:40:58,705 If you don't want 'funvip.external.BLAST_Windows.bin' to be distributed and are 2024-06-17T06:40:58,705 already explicitly excluding 'funvip.external.BLAST_Windows.bin' via 2024-06-17T06:40:58,705 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-06-17T06:40:58,706 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-06-17T06:40:58,706 combination with a more fine grained `package-data` configuration. 2024-06-17T06:40:58,707 You can read more about "package data files" on setuptools documentation page: 2024-06-17T06:40:58,708 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-06-17T06:40:58,710 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-06-17T06:40:58,710 even if it does not contain any `.py` files. 2024-06-17T06:40:58,710 On the other hand, currently there is no concept of package data 2024-06-17T06:40:58,711 directory, all directories are treated like packages. 2024-06-17T06:40:58,711 ******************************************************************************** 2024-06-17T06:40:58,712 !! 2024-06-17T06:40:58,713 check.warn(importable) 2024-06-17T06:40:58,713 /tmp/pip-build-env-7nusnufw/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'funvip.external.BLAST_Windows.doc' is absent from the `packages` configuration. 2024-06-17T06:40:58,714 !! 2024-06-17T06:40:58,715 ******************************************************************************** 2024-06-17T06:40:58,715 ############################ 2024-06-17T06:40:58,716 # Package would be ignored # 2024-06-17T06:40:58,716 ############################ 2024-06-17T06:40:58,717 Python recognizes 'funvip.external.BLAST_Windows.doc' as an importable package[^1], 2024-06-17T06:40:58,717 but it is absent from setuptools' `packages` configuration. 2024-06-17T06:40:58,719 This leads to an ambiguous overall configuration. If you want to distribute this 2024-06-17T06:40:58,719 package, please make sure that 'funvip.external.BLAST_Windows.doc' is explicitly added 2024-06-17T06:40:58,720 to the `packages` configuration field. 2024-06-17T06:40:58,721 Alternatively, you can also rely on setuptools' discovery methods 2024-06-17T06:40:58,721 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-06-17T06:40:58,722 instead of `find_packages(...)`/`find:`). 2024-06-17T06:40:58,723 You can read more about "package discovery" on setuptools documentation page: 2024-06-17T06:40:58,724 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-06-17T06:40:58,725 If you don't want 'funvip.external.BLAST_Windows.doc' to be distributed and are 2024-06-17T06:40:58,725 already explicitly excluding 'funvip.external.BLAST_Windows.doc' via 2024-06-17T06:40:58,726 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-06-17T06:40:58,726 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-06-17T06:40:58,727 combination with a more fine grained `package-data` configuration. 2024-06-17T06:40:58,728 You can read more about "package data files" on setuptools documentation page: 2024-06-17T06:40:58,729 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-06-17T06:40:58,731 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-06-17T06:40:58,731 even if it does not contain any `.py` files. 2024-06-17T06:40:58,732 On the other hand, currently there is no concept of package data 2024-06-17T06:40:58,732 directory, all directories are treated like packages. 2024-06-17T06:40:58,733 ******************************************************************************** 2024-06-17T06:40:58,734 !! 2024-06-17T06:40:58,734 check.warn(importable) 2024-06-17T06:40:58,734 /tmp/pip-build-env-7nusnufw/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'funvip.external.FastTree_Windows' is absent from the `packages` configuration. 2024-06-17T06:40:58,735 !! 2024-06-17T06:40:58,736 ******************************************************************************** 2024-06-17T06:40:58,736 ############################ 2024-06-17T06:40:58,737 # Package would be ignored # 2024-06-17T06:40:58,737 ############################ 2024-06-17T06:40:58,738 Python recognizes 'funvip.external.FastTree_Windows' as an importable package[^1], 2024-06-17T06:40:58,738 but it is absent from setuptools' `packages` configuration. 2024-06-17T06:40:58,739 This leads to an ambiguous overall configuration. If you want to distribute this 2024-06-17T06:40:58,740 package, please make sure that 'funvip.external.FastTree_Windows' is explicitly added 2024-06-17T06:40:58,740 to the `packages` configuration field. 2024-06-17T06:40:58,741 Alternatively, you can also rely on setuptools' discovery methods 2024-06-17T06:40:58,741 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-06-17T06:40:58,742 instead of `find_packages(...)`/`find:`). 2024-06-17T06:40:58,743 You can read more about "package discovery" on setuptools documentation page: 2024-06-17T06:40:58,744 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-06-17T06:40:58,745 If you don't want 'funvip.external.FastTree_Windows' to be distributed and are 2024-06-17T06:40:58,746 already explicitly excluding 'funvip.external.FastTree_Windows' via 2024-06-17T06:40:58,746 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-06-17T06:40:58,747 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-06-17T06:40:58,747 combination with a more fine grained `package-data` configuration. 2024-06-17T06:40:58,748 You can read more about "package data files" on setuptools documentation page: 2024-06-17T06:40:58,750 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-06-17T06:40:58,751 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-06-17T06:40:58,752 even if it does not contain any `.py` files. 2024-06-17T06:40:58,753 On the other hand, currently there is no concept of package data 2024-06-17T06:40:58,753 directory, all directories are treated like packages. 2024-06-17T06:40:58,754 ******************************************************************************** 2024-06-17T06:40:58,755 !! 2024-06-17T06:40:58,755 check.warn(importable) 2024-06-17T06:40:58,756 /tmp/pip-build-env-7nusnufw/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'funvip.external.RAxML_Windows' is absent from the `packages` configuration. 2024-06-17T06:40:58,756 !! 2024-06-17T06:40:58,758 ******************************************************************************** 2024-06-17T06:40:58,758 ############################ 2024-06-17T06:40:58,759 # Package would be ignored # 2024-06-17T06:40:58,760 ############################ 2024-06-17T06:40:58,760 Python recognizes 'funvip.external.RAxML_Windows' as an importable package[^1], 2024-06-17T06:40:58,761 but it is absent from setuptools' `packages` configuration. 2024-06-17T06:40:58,762 This leads to an ambiguous overall configuration. If you want to distribute this 2024-06-17T06:40:58,763 package, please make sure that 'funvip.external.RAxML_Windows' is explicitly added 2024-06-17T06:40:58,763 to the `packages` configuration field. 2024-06-17T06:40:58,764 Alternatively, you can also rely on setuptools' discovery methods 2024-06-17T06:40:58,764 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-06-17T06:40:58,765 instead of `find_packages(...)`/`find:`). 2024-06-17T06:40:58,766 You can read more about "package discovery" on setuptools documentation page: 2024-06-17T06:40:58,767 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-06-17T06:40:58,768 If you don't want 'funvip.external.RAxML_Windows' to be distributed and are 2024-06-17T06:40:58,768 already explicitly excluding 'funvip.external.RAxML_Windows' via 2024-06-17T06:40:58,769 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-06-17T06:40:58,769 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-06-17T06:40:58,770 combination with a more fine grained `package-data` configuration. 2024-06-17T06:40:58,771 You can read more about "package data files" on setuptools documentation page: 2024-06-17T06:40:58,772 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-06-17T06:40:58,774 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-06-17T06:40:58,774 even if it does not contain any `.py` files. 2024-06-17T06:40:58,775 On the other hand, currently there is no concept of package data 2024-06-17T06:40:58,776 directory, all directories are treated like packages. 2024-06-17T06:40:58,776 ******************************************************************************** 2024-06-17T06:40:58,778 !! 2024-06-17T06:40:58,779 check.warn(importable) 2024-06-17T06:40:58,779 /tmp/pip-build-env-7nusnufw/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'funvip.external.iqtree' is absent from the `packages` configuration. 2024-06-17T06:40:58,784 !! 2024-06-17T06:40:58,785 ******************************************************************************** 2024-06-17T06:40:58,786 ############################ 2024-06-17T06:40:58,786 # Package would be ignored # 2024-06-17T06:40:58,787 ############################ 2024-06-17T06:40:58,788 Python recognizes 'funvip.external.iqtree' as an importable package[^1], 2024-06-17T06:40:58,788 but it is absent from setuptools' `packages` configuration. 2024-06-17T06:40:58,789 This leads to an ambiguous overall configuration. If you want to distribute this 2024-06-17T06:40:58,790 package, please make sure that 'funvip.external.iqtree' is explicitly added 2024-06-17T06:40:58,791 to the `packages` configuration field. 2024-06-17T06:40:58,792 Alternatively, you can also rely on setuptools' discovery methods 2024-06-17T06:40:58,792 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-06-17T06:40:58,793 instead of `find_packages(...)`/`find:`). 2024-06-17T06:40:58,794 You can read more about "package discovery" on setuptools documentation page: 2024-06-17T06:40:58,795 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-06-17T06:40:58,796 If you don't want 'funvip.external.iqtree' to be distributed and are 2024-06-17T06:40:58,797 already explicitly excluding 'funvip.external.iqtree' via 2024-06-17T06:40:58,797 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-06-17T06:40:58,798 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-06-17T06:40:58,799 combination with a more fine grained `package-data` configuration. 2024-06-17T06:40:58,800 You can read more about "package data files" on setuptools documentation page: 2024-06-17T06:40:58,801 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-06-17T06:40:58,802 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-06-17T06:40:58,802 even if it does not contain any `.py` files. 2024-06-17T06:40:58,803 On the other hand, currently there is no concept of package data 2024-06-17T06:40:58,803 directory, all directories are treated like packages. 2024-06-17T06:40:58,804 ******************************************************************************** 2024-06-17T06:40:58,805 !! 2024-06-17T06:40:58,805 check.warn(importable) 2024-06-17T06:40:58,806 /tmp/pip-build-env-7nusnufw/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'funvip.external.iqtree.bin' is absent from the `packages` configuration. 2024-06-17T06:40:58,806 !! 2024-06-17T06:40:58,807 ******************************************************************************** 2024-06-17T06:40:58,807 ############################ 2024-06-17T06:40:58,808 # Package would be ignored # 2024-06-17T06:40:58,809 ############################ 2024-06-17T06:40:58,809 Python recognizes 'funvip.external.iqtree.bin' as an importable package[^1], 2024-06-17T06:40:58,810 but it is absent from setuptools' `packages` configuration. 2024-06-17T06:40:58,811 This leads to an ambiguous overall configuration. If you want to distribute this 2024-06-17T06:40:58,811 package, please make sure that 'funvip.external.iqtree.bin' is explicitly added 2024-06-17T06:40:58,812 to the `packages` configuration field. 2024-06-17T06:40:58,813 Alternatively, you can also rely on setuptools' discovery methods 2024-06-17T06:40:58,813 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-06-17T06:40:58,814 instead of `find_packages(...)`/`find:`). 2024-06-17T06:40:58,815 You can read more about "package discovery" on setuptools documentation page: 2024-06-17T06:40:58,816 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-06-17T06:40:58,817 If you don't want 'funvip.external.iqtree.bin' to be distributed and are 2024-06-17T06:40:58,818 already explicitly excluding 'funvip.external.iqtree.bin' via 2024-06-17T06:40:58,819 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-06-17T06:40:58,819 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-06-17T06:40:58,820 combination with a more fine grained `package-data` configuration. 2024-06-17T06:40:58,821 You can read more about "package data files" on setuptools documentation page: 2024-06-17T06:40:58,822 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-06-17T06:40:58,824 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-06-17T06:40:58,824 even if it does not contain any `.py` files. 2024-06-17T06:40:58,825 On the other hand, currently there is no concept of package data 2024-06-17T06:40:58,826 directory, all directories are treated like packages. 2024-06-17T06:40:58,826 ******************************************************************************** 2024-06-17T06:40:58,828 !! 2024-06-17T06:40:58,828 check.warn(importable) 2024-06-17T06:40:58,829 /tmp/pip-build-env-7nusnufw/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'funvip.external.mmseqs_Windows' is absent from the `packages` configuration. 2024-06-17T06:40:58,829 !! 2024-06-17T06:40:58,831 ******************************************************************************** 2024-06-17T06:40:58,831 ############################ 2024-06-17T06:40:58,832 # Package would be ignored # 2024-06-17T06:40:58,832 ############################ 2024-06-17T06:40:58,833 Python recognizes 'funvip.external.mmseqs_Windows' as an importable package[^1], 2024-06-17T06:40:58,833 but it is absent from setuptools' `packages` configuration. 2024-06-17T06:40:58,834 This leads to an ambiguous overall configuration. If you want to distribute this 2024-06-17T06:40:58,834 package, please make sure that 'funvip.external.mmseqs_Windows' is explicitly added 2024-06-17T06:40:58,835 to the `packages` configuration field. 2024-06-17T06:40:58,836 Alternatively, you can also rely on setuptools' discovery methods 2024-06-17T06:40:58,837 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-06-17T06:40:58,837 instead of `find_packages(...)`/`find:`). 2024-06-17T06:40:58,838 You can read more about "package discovery" on setuptools documentation page: 2024-06-17T06:40:58,839 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-06-17T06:40:58,840 If you don't want 'funvip.external.mmseqs_Windows' to be distributed and are 2024-06-17T06:40:58,841 already explicitly excluding 'funvip.external.mmseqs_Windows' via 2024-06-17T06:40:58,841 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-06-17T06:40:58,842 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-06-17T06:40:58,843 combination with a more fine grained `package-data` configuration. 2024-06-17T06:40:58,844 You can read more about "package data files" on setuptools documentation page: 2024-06-17T06:40:58,845 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-06-17T06:40:58,847 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-06-17T06:40:58,848 even if it does not contain any `.py` files. 2024-06-17T06:40:58,849 On the other hand, currently there is no concept of package data 2024-06-17T06:40:58,849 directory, all directories are treated like packages. 2024-06-17T06:40:58,850 ******************************************************************************** 2024-06-17T06:40:58,851 !! 2024-06-17T06:40:58,852 check.warn(importable) 2024-06-17T06:40:58,853 /tmp/pip-build-env-7nusnufw/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'funvip.external.mmseqs_Windows.bin' is absent from the `packages` configuration. 2024-06-17T06:40:58,853 !! 2024-06-17T06:40:58,854 ******************************************************************************** 2024-06-17T06:40:58,855 ############################ 2024-06-17T06:40:58,868 # Package would be ignored # 2024-06-17T06:40:58,908 ############################ 2024-06-17T06:40:58,919 Python recognizes 'funvip.external.mmseqs_Windows.bin' as an importable package[^1], 2024-06-17T06:40:58,953 but it is absent from setuptools' `packages` configuration. 2024-06-17T06:40:59,103 This leads to an ambiguous overall configuration. If you want to distribute this 2024-06-17T06:40:59,125 package, please make sure that 'funvip.external.mmseqs_Windows.bin' is explicitly added 2024-06-17T06:40:59,125 to the `packages` configuration field. 2024-06-17T06:40:59,126 Alternatively, you can also rely on setuptools' discovery methods 2024-06-17T06:40:59,127 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-06-17T06:40:59,127 instead of `find_packages(...)`/`find:`). 2024-06-17T06:40:59,128 You can read more about "package discovery" on setuptools documentation page: 2024-06-17T06:40:59,129 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-06-17T06:40:59,130 If you don't want 'funvip.external.mmseqs_Windows.bin' to be distributed and are 2024-06-17T06:40:59,130 already explicitly excluding 'funvip.external.mmseqs_Windows.bin' via 2024-06-17T06:40:59,131 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-06-17T06:40:59,131 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-06-17T06:40:59,131 combination with a more fine grained `package-data` configuration. 2024-06-17T06:40:59,132 You can read more about "package data files" on setuptools documentation page: 2024-06-17T06:40:59,133 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-06-17T06:40:59,134 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-06-17T06:40:59,135 even if it does not contain any `.py` files. 2024-06-17T06:40:59,135 On the other hand, currently there is no concept of package data 2024-06-17T06:40:59,135 directory, all directories are treated like packages. 2024-06-17T06:40:59,136 ******************************************************************************** 2024-06-17T06:40:59,137 !! 2024-06-17T06:40:59,137 check.warn(importable) 2024-06-17T06:40:59,138 /tmp/pip-build-env-7nusnufw/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'funvip.external.mmseqs_Windows.examples' is absent from the `packages` configuration. 2024-06-17T06:40:59,138 !! 2024-06-17T06:40:59,139 ******************************************************************************** 2024-06-17T06:40:59,139 ############################ 2024-06-17T06:40:59,140 # Package would be ignored # 2024-06-17T06:40:59,140 ############################ 2024-06-17T06:40:59,141 Python recognizes 'funvip.external.mmseqs_Windows.examples' as an importable package[^1], 2024-06-17T06:40:59,141 but it is absent from setuptools' `packages` configuration. 2024-06-17T06:40:59,142 This leads to an ambiguous overall configuration. If you want to distribute this 2024-06-17T06:40:59,142 package, please make sure that 'funvip.external.mmseqs_Windows.examples' is explicitly added 2024-06-17T06:40:59,143 to the `packages` configuration field. 2024-06-17T06:40:59,144 Alternatively, you can also rely on setuptools' discovery methods 2024-06-17T06:40:59,144 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-06-17T06:40:59,145 instead of `find_packages(...)`/`find:`). 2024-06-17T06:40:59,146 You can read more about "package discovery" on setuptools documentation page: 2024-06-17T06:40:59,146 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-06-17T06:40:59,147 If you don't want 'funvip.external.mmseqs_Windows.examples' to be distributed and are 2024-06-17T06:40:59,148 already explicitly excluding 'funvip.external.mmseqs_Windows.examples' via 2024-06-17T06:40:59,148 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-06-17T06:40:59,149 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-06-17T06:40:59,149 combination with a more fine grained `package-data` configuration. 2024-06-17T06:40:59,151 You can read more about "package data files" on setuptools documentation page: 2024-06-17T06:40:59,152 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-06-17T06:40:59,153 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-06-17T06:40:59,154 even if it does not contain any `.py` files. 2024-06-17T06:40:59,155 On the other hand, currently there is no concept of package data 2024-06-17T06:40:59,155 directory, all directories are treated like packages. 2024-06-17T06:40:59,156 ******************************************************************************** 2024-06-17T06:40:59,157 !! 2024-06-17T06:40:59,157 check.warn(importable) 2024-06-17T06:40:59,157 /tmp/pip-build-env-7nusnufw/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'funvip.external.mmseqs_Windows.matrices' is absent from the `packages` configuration. 2024-06-17T06:40:59,158 !! 2024-06-17T06:40:59,159 ******************************************************************************** 2024-06-17T06:40:59,160 ############################ 2024-06-17T06:40:59,160 # Package would be ignored # 2024-06-17T06:40:59,161 ############################ 2024-06-17T06:40:59,161 Python recognizes 'funvip.external.mmseqs_Windows.matrices' as an importable package[^1], 2024-06-17T06:40:59,162 but it is absent from setuptools' `packages` configuration. 2024-06-17T06:40:59,163 This leads to an ambiguous overall configuration. If you want to distribute this 2024-06-17T06:40:59,164 package, please make sure that 'funvip.external.mmseqs_Windows.matrices' is explicitly added 2024-06-17T06:40:59,164 to the `packages` configuration field. 2024-06-17T06:40:59,165 Alternatively, you can also rely on setuptools' discovery methods 2024-06-17T06:40:59,166 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-06-17T06:40:59,166 instead of `find_packages(...)`/`find:`). 2024-06-17T06:40:59,167 You can read more about "package discovery" on setuptools documentation page: 2024-06-17T06:40:59,168 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-06-17T06:40:59,169 If you don't want 'funvip.external.mmseqs_Windows.matrices' to be distributed and are 2024-06-17T06:40:59,170 already explicitly excluding 'funvip.external.mmseqs_Windows.matrices' via 2024-06-17T06:40:59,170 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-06-17T06:40:59,171 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-06-17T06:40:59,171 combination with a more fine grained `package-data` configuration. 2024-06-17T06:40:59,172 You can read more about "package data files" on setuptools documentation page: 2024-06-17T06:40:59,174 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-06-17T06:40:59,176 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-06-17T06:40:59,177 even if it does not contain any `.py` files. 2024-06-17T06:40:59,178 On the other hand, currently there is no concept of package data 2024-06-17T06:40:59,179 directory, all directories are treated like packages. 2024-06-17T06:40:59,179 ******************************************************************************** 2024-06-17T06:40:59,180 !! 2024-06-17T06:40:59,181 check.warn(importable) 2024-06-17T06:40:59,183 /tmp/pip-build-env-7nusnufw/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'funvip.external.mmseqs_Windows.util' is absent from the `packages` configuration. 2024-06-17T06:40:59,184 !! 2024-06-17T06:40:59,185 ******************************************************************************** 2024-06-17T06:40:59,185 ############################ 2024-06-17T06:40:59,186 # Package would be ignored # 2024-06-17T06:40:59,186 ############################ 2024-06-17T06:40:59,187 Python recognizes 'funvip.external.mmseqs_Windows.util' as an importable package[^1], 2024-06-17T06:40:59,187 but it is absent from setuptools' `packages` configuration. 2024-06-17T06:40:59,188 This leads to an ambiguous overall configuration. If you want to distribute this 2024-06-17T06:40:59,189 package, please make sure that 'funvip.external.mmseqs_Windows.util' is explicitly added 2024-06-17T06:40:59,189 to the `packages` configuration field. 2024-06-17T06:40:59,190 Alternatively, you can also rely on setuptools' discovery methods 2024-06-17T06:40:59,191 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-06-17T06:40:59,191 instead of `find_packages(...)`/`find:`). 2024-06-17T06:40:59,192 You can read more about "package discovery" on setuptools documentation page: 2024-06-17T06:40:59,193 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-06-17T06:40:59,194 If you don't want 'funvip.external.mmseqs_Windows.util' to be distributed and are 2024-06-17T06:40:59,194 already explicitly excluding 'funvip.external.mmseqs_Windows.util' via 2024-06-17T06:40:59,195 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-06-17T06:40:59,195 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-06-17T06:40:59,196 combination with a more fine grained `package-data` configuration. 2024-06-17T06:40:59,196 You can read more about "package data files" on setuptools documentation page: 2024-06-17T06:40:59,197 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-06-17T06:40:59,199 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-06-17T06:40:59,199 even if it does not contain any `.py` files. 2024-06-17T06:40:59,200 On the other hand, currently there is no concept of package data 2024-06-17T06:40:59,200 directory, all directories are treated like packages. 2024-06-17T06:40:59,201 ******************************************************************************** 2024-06-17T06:40:59,202 !! 2024-06-17T06:40:59,202 check.warn(importable) 2024-06-17T06:40:59,203 /tmp/pip-build-env-7nusnufw/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'funvip.src.__pycache__' is absent from the `packages` configuration. 2024-06-17T06:40:59,203 !! 2024-06-17T06:40:59,204 ******************************************************************************** 2024-06-17T06:40:59,205 ############################ 2024-06-17T06:40:59,205 # Package would be ignored # 2024-06-17T06:40:59,206 ############################ 2024-06-17T06:40:59,206 Python recognizes 'funvip.src.__pycache__' as an importable package[^1], 2024-06-17T06:40:59,207 but it is absent from setuptools' `packages` configuration. 2024-06-17T06:40:59,208 This leads to an ambiguous overall configuration. If you want to distribute this 2024-06-17T06:40:59,209 package, please make sure that 'funvip.src.__pycache__' is explicitly added 2024-06-17T06:40:59,209 to the `packages` configuration field. 2024-06-17T06:40:59,210 Alternatively, you can also rely on setuptools' discovery methods 2024-06-17T06:40:59,211 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-06-17T06:40:59,211 instead of `find_packages(...)`/`find:`). 2024-06-17T06:40:59,212 You can read more about "package discovery" on setuptools documentation page: 2024-06-17T06:40:59,213 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-06-17T06:40:59,214 If you don't want 'funvip.src.__pycache__' to be distributed and are 2024-06-17T06:40:59,215 already explicitly excluding 'funvip.src.__pycache__' via 2024-06-17T06:40:59,215 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-06-17T06:40:59,216 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-06-17T06:40:59,217 combination with a more fine grained `package-data` configuration. 2024-06-17T06:40:59,218 You can read more about "package data files" on setuptools documentation page: 2024-06-17T06:40:59,219 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-06-17T06:40:59,220 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-06-17T06:40:59,220 even if it does not contain any `.py` files. 2024-06-17T06:40:59,221 On the other hand, currently there is no concept of package data 2024-06-17T06:40:59,221 directory, all directories are treated like packages. 2024-06-17T06:40:59,222 ******************************************************************************** 2024-06-17T06:40:59,223 !! 2024-06-17T06:40:59,223 check.warn(importable) 2024-06-17T06:40:59,223 /tmp/pip-build-env-7nusnufw/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'funvip.src.templates' is absent from the `packages` configuration. 2024-06-17T06:40:59,224 !! 2024-06-17T06:40:59,225 ******************************************************************************** 2024-06-17T06:40:59,225 ############################ 2024-06-17T06:40:59,226 # Package would be ignored # 2024-06-17T06:40:59,226 ############################ 2024-06-17T06:40:59,227 Python recognizes 'funvip.src.templates' as an importable package[^1], 2024-06-17T06:40:59,227 but it is absent from setuptools' `packages` configuration. 2024-06-17T06:40:59,228 This leads to an ambiguous overall configuration. If you want to distribute this 2024-06-17T06:40:59,229 package, please make sure that 'funvip.src.templates' is explicitly added 2024-06-17T06:40:59,229 to the `packages` configuration field. 2024-06-17T06:40:59,230 Alternatively, you can also rely on setuptools' discovery methods 2024-06-17T06:40:59,231 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-06-17T06:40:59,231 instead of `find_packages(...)`/`find:`). 2024-06-17T06:40:59,232 You can read more about "package discovery" on setuptools documentation page: 2024-06-17T06:40:59,233 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-06-17T06:40:59,234 If you don't want 'funvip.src.templates' to be distributed and are 2024-06-17T06:40:59,235 already explicitly excluding 'funvip.src.templates' via 2024-06-17T06:40:59,236 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-06-17T06:40:59,236 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-06-17T06:40:59,237 combination with a more fine grained `package-data` configuration. 2024-06-17T06:40:59,238 You can read more about "package data files" on setuptools documentation page: 2024-06-17T06:40:59,239 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-06-17T06:40:59,240 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-06-17T06:40:59,241 even if it does not contain any `.py` files. 2024-06-17T06:40:59,241 On the other hand, currently there is no concept of package data 2024-06-17T06:40:59,242 directory, all directories are treated like packages. 2024-06-17T06:40:59,242 ******************************************************************************** 2024-06-17T06:40:59,243 !! 2024-06-17T06:40:59,244 check.warn(importable) 2024-06-17T06:40:59,244 /tmp/pip-build-env-7nusnufw/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'funvip.test_dataset.penicillium' is absent from the `packages` configuration. 2024-06-17T06:40:59,245 !! 2024-06-17T06:40:59,246 ******************************************************************************** 2024-06-17T06:40:59,247 ############################ 2024-06-17T06:40:59,247 # Package would be ignored # 2024-06-17T06:40:59,248 ############################ 2024-06-17T06:40:59,248 Python recognizes 'funvip.test_dataset.penicillium' as an importable package[^1], 2024-06-17T06:40:59,248 but it is absent from setuptools' `packages` configuration. 2024-06-17T06:40:59,249 This leads to an ambiguous overall configuration. If you want to distribute this 2024-06-17T06:40:59,250 package, please make sure that 'funvip.test_dataset.penicillium' is explicitly added 2024-06-17T06:40:59,250 to the `packages` configuration field. 2024-06-17T06:40:59,251 Alternatively, you can also rely on setuptools' discovery methods 2024-06-17T06:40:59,251 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-06-17T06:40:59,252 instead of `find_packages(...)`/`find:`). 2024-06-17T06:40:59,253 You can read more about "package discovery" on setuptools documentation page: 2024-06-17T06:40:59,254 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-06-17T06:40:59,255 If you don't want 'funvip.test_dataset.penicillium' to be distributed and are 2024-06-17T06:40:59,255 already explicitly excluding 'funvip.test_dataset.penicillium' via 2024-06-17T06:40:59,256 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-06-17T06:40:59,256 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-06-17T06:40:59,257 combination with a more fine grained `package-data` configuration. 2024-06-17T06:40:59,258 You can read more about "package data files" on setuptools documentation page: 2024-06-17T06:40:59,259 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-06-17T06:40:59,260 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-06-17T06:40:59,261 even if it does not contain any `.py` files. 2024-06-17T06:40:59,261 On the other hand, currently there is no concept of package data 2024-06-17T06:40:59,262 directory, all directories are treated like packages. 2024-06-17T06:40:59,270 ******************************************************************************** 2024-06-17T06:40:59,299 !! 2024-06-17T06:40:59,324 check.warn(importable) 2024-06-17T06:40:59,404 /tmp/pip-build-env-7nusnufw/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'funvip.test_dataset.penicillium.DB' is absent from the `packages` configuration. 2024-06-17T06:40:59,453 !! 2024-06-17T06:40:59,456 ******************************************************************************** 2024-06-17T06:40:59,456 ############################ 2024-06-17T06:40:59,457 # Package would be ignored # 2024-06-17T06:40:59,457 ############################ 2024-06-17T06:40:59,458 Python recognizes 'funvip.test_dataset.penicillium.DB' as an importable package[^1], 2024-06-17T06:40:59,458 but it is absent from setuptools' `packages` configuration. 2024-06-17T06:40:59,459 This leads to an ambiguous overall configuration. If you want to distribute this 2024-06-17T06:40:59,460 package, please make sure that 'funvip.test_dataset.penicillium.DB' is explicitly added 2024-06-17T06:40:59,460 to the `packages` configuration field. 2024-06-17T06:40:59,461 Alternatively, you can also rely on setuptools' discovery methods 2024-06-17T06:40:59,462 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-06-17T06:40:59,462 instead of `find_packages(...)`/`find:`). 2024-06-17T06:40:59,464 You can read more about "package discovery" on setuptools documentation page: 2024-06-17T06:40:59,465 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-06-17T06:40:59,466 If you don't want 'funvip.test_dataset.penicillium.DB' to be distributed and are 2024-06-17T06:40:59,466 already explicitly excluding 'funvip.test_dataset.penicillium.DB' via 2024-06-17T06:40:59,466 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-06-17T06:40:59,467 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-06-17T06:40:59,467 combination with a more fine grained `package-data` configuration. 2024-06-17T06:40:59,468 You can read more about "package data files" on setuptools documentation page: 2024-06-17T06:40:59,469 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-06-17T06:40:59,470 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-06-17T06:40:59,471 even if it does not contain any `.py` files. 2024-06-17T06:40:59,471 On the other hand, currently there is no concept of package data 2024-06-17T06:40:59,472 directory, all directories are treated like packages. 2024-06-17T06:40:59,472 ******************************************************************************** 2024-06-17T06:40:59,473 !! 2024-06-17T06:40:59,474 check.warn(importable) 2024-06-17T06:40:59,478 /tmp/pip-build-env-7nusnufw/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'funvip.test_dataset.penicillium.Query' is absent from the `packages` configuration. 2024-06-17T06:40:59,479 !! 2024-06-17T06:40:59,480 ******************************************************************************** 2024-06-17T06:40:59,481 ############################ 2024-06-17T06:40:59,481 # Package would be ignored # 2024-06-17T06:40:59,482 ############################ 2024-06-17T06:40:59,483 Python recognizes 'funvip.test_dataset.penicillium.Query' as an importable package[^1], 2024-06-17T06:40:59,484 but it is absent from setuptools' `packages` configuration. 2024-06-17T06:40:59,485 This leads to an ambiguous overall configuration. If you want to distribute this 2024-06-17T06:40:59,486 package, please make sure that 'funvip.test_dataset.penicillium.Query' is explicitly added 2024-06-17T06:40:59,486 to the `packages` configuration field. 2024-06-17T06:40:59,488 Alternatively, you can also rely on setuptools' discovery methods 2024-06-17T06:40:59,488 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-06-17T06:40:59,489 instead of `find_packages(...)`/`find:`). 2024-06-17T06:40:59,490 You can read more about "package discovery" on setuptools documentation page: 2024-06-17T06:40:59,491 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-06-17T06:40:59,492 If you don't want 'funvip.test_dataset.penicillium.Query' to be distributed and are 2024-06-17T06:40:59,493 already explicitly excluding 'funvip.test_dataset.penicillium.Query' via 2024-06-17T06:40:59,493 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-06-17T06:40:59,494 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-06-17T06:40:59,494 combination with a more fine grained `package-data` configuration. 2024-06-17T06:40:59,496 You can read more about "package data files" on setuptools documentation page: 2024-06-17T06:40:59,497 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-06-17T06:40:59,499 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-06-17T06:40:59,500 even if it does not contain any `.py` files. 2024-06-17T06:40:59,501 On the other hand, currently there is no concept of package data 2024-06-17T06:40:59,501 directory, all directories are treated like packages. 2024-06-17T06:40:59,502 ******************************************************************************** 2024-06-17T06:40:59,503 !! 2024-06-17T06:40:59,503 check.warn(importable) 2024-06-17T06:40:59,503 /tmp/pip-build-env-7nusnufw/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'funvip.test_dataset.terrei' is absent from the `packages` configuration. 2024-06-17T06:40:59,504 !! 2024-06-17T06:40:59,505 ******************************************************************************** 2024-06-17T06:40:59,505 ############################ 2024-06-17T06:40:59,506 # Package would be ignored # 2024-06-17T06:40:59,506 ############################ 2024-06-17T06:40:59,507 Python recognizes 'funvip.test_dataset.terrei' as an importable package[^1], 2024-06-17T06:40:59,507 but it is absent from setuptools' `packages` configuration. 2024-06-17T06:40:59,508 This leads to an ambiguous overall configuration. If you want to distribute this 2024-06-17T06:40:59,509 package, please make sure that 'funvip.test_dataset.terrei' is explicitly added 2024-06-17T06:40:59,509 to the `packages` configuration field. 2024-06-17T06:40:59,510 Alternatively, you can also rely on setuptools' discovery methods 2024-06-17T06:40:59,511 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-06-17T06:40:59,511 instead of `find_packages(...)`/`find:`). 2024-06-17T06:40:59,512 You can read more about "package discovery" on setuptools documentation page: 2024-06-17T06:40:59,513 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-06-17T06:40:59,514 If you don't want 'funvip.test_dataset.terrei' to be distributed and are 2024-06-17T06:40:59,515 already explicitly excluding 'funvip.test_dataset.terrei' via 2024-06-17T06:40:59,515 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-06-17T06:40:59,516 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-06-17T06:40:59,516 combination with a more fine grained `package-data` configuration. 2024-06-17T06:40:59,517 You can read more about "package data files" on setuptools documentation page: 2024-06-17T06:40:59,519 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-06-17T06:40:59,521 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-06-17T06:40:59,521 even if it does not contain any `.py` files. 2024-06-17T06:40:59,522 On the other hand, currently there is no concept of package data 2024-06-17T06:40:59,522 directory, all directories are treated like packages. 2024-06-17T06:40:59,523 ******************************************************************************** 2024-06-17T06:40:59,524 !! 2024-06-17T06:40:59,525 check.warn(importable) 2024-06-17T06:40:59,525 /tmp/pip-build-env-7nusnufw/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'funvip.test_dataset.terrei.DB' is absent from the `packages` configuration. 2024-06-17T06:40:59,526 !! 2024-06-17T06:40:59,527 ******************************************************************************** 2024-06-17T06:40:59,528 ############################ 2024-06-17T06:40:59,528 # Package would be ignored # 2024-06-17T06:40:59,529 ############################ 2024-06-17T06:40:59,529 Python recognizes 'funvip.test_dataset.terrei.DB' as an importable package[^1], 2024-06-17T06:40:59,530 but it is absent from setuptools' `packages` configuration. 2024-06-17T06:40:59,531 This leads to an ambiguous overall configuration. If you want to distribute this 2024-06-17T06:40:59,531 package, please make sure that 'funvip.test_dataset.terrei.DB' is explicitly added 2024-06-17T06:40:59,531 to the `packages` configuration field. 2024-06-17T06:40:59,554 Alternatively, you can also rely on setuptools' discovery methods 2024-06-17T06:40:59,573 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-06-17T06:40:59,606 instead of `find_packages(...)`/`find:`). 2024-06-17T06:40:59,678 You can read more about "package discovery" on setuptools documentation page: 2024-06-17T06:40:59,683 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-06-17T06:40:59,685 If you don't want 'funvip.test_dataset.terrei.DB' to be distributed and are 2024-06-17T06:40:59,686 already explicitly excluding 'funvip.test_dataset.terrei.DB' via 2024-06-17T06:40:59,687 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-06-17T06:40:59,688 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-06-17T06:40:59,689 combination with a more fine grained `package-data` configuration. 2024-06-17T06:40:59,690 You can read more about "package data files" on setuptools documentation page: 2024-06-17T06:40:59,691 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-06-17T06:40:59,692 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-06-17T06:40:59,693 even if it does not contain any `.py` files. 2024-06-17T06:40:59,693 On the other hand, currently there is no concept of package data 2024-06-17T06:40:59,694 directory, all directories are treated like packages. 2024-06-17T06:40:59,694 ******************************************************************************** 2024-06-17T06:40:59,695 !! 2024-06-17T06:40:59,696 check.warn(importable) 2024-06-17T06:40:59,696 /tmp/pip-build-env-7nusnufw/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'funvip.test_dataset.terrei.Query' is absent from the `packages` configuration. 2024-06-17T06:40:59,696 !! 2024-06-17T06:40:59,697 ******************************************************************************** 2024-06-17T06:40:59,698 ############################ 2024-06-17T06:40:59,698 # Package would be ignored # 2024-06-17T06:40:59,699 ############################ 2024-06-17T06:40:59,700 Python recognizes 'funvip.test_dataset.terrei.Query' as an importable package[^1], 2024-06-17T06:40:59,700 but it is absent from setuptools' `packages` configuration. 2024-06-17T06:40:59,701 This leads to an ambiguous overall configuration. If you want to distribute this 2024-06-17T06:40:59,702 package, please make sure that 'funvip.test_dataset.terrei.Query' is explicitly added 2024-06-17T06:40:59,703 to the `packages` configuration field. 2024-06-17T06:40:59,705 Alternatively, you can also rely on setuptools' discovery methods 2024-06-17T06:40:59,706 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-06-17T06:40:59,707 instead of `find_packages(...)`/`find:`). 2024-06-17T06:40:59,709 You can read more about "package discovery" on setuptools documentation page: 2024-06-17T06:40:59,710 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-06-17T06:40:59,711 If you don't want 'funvip.test_dataset.terrei.Query' to be distributed and are 2024-06-17T06:40:59,712 already explicitly excluding 'funvip.test_dataset.terrei.Query' via 2024-06-17T06:40:59,713 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-06-17T06:40:59,714 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-06-17T06:40:59,716 combination with a more fine grained `package-data` configuration. 2024-06-17T06:40:59,717 You can read more about "package data files" on setuptools documentation page: 2024-06-17T06:40:59,718 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-06-17T06:40:59,720 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-06-17T06:40:59,720 even if it does not contain any `.py` files. 2024-06-17T06:40:59,721 On the other hand, currently there is no concept of package data 2024-06-17T06:40:59,721 directory, all directories are treated like packages. 2024-06-17T06:40:59,722 ******************************************************************************** 2024-06-17T06:40:59,722 !! 2024-06-17T06:40:59,723 check.warn(importable) 2024-06-17T06:40:59,723 copying funvip/data/genus_line.txt -> build/lib/funvip/data 2024-06-17T06:40:59,724 copying funvip/data/Option_manager.xlsx -> build/lib/funvip/data 2024-06-17T06:40:59,724 copying funvip/external/MAFFT_Windows.zip -> build/lib/funvip/external 2024-06-17T06:40:59,725 copying funvip/external/MAFFT_LICENSE -> build/lib/funvip/external 2024-06-17T06:40:59,725 creating build/lib/funvip/preset 2024-06-17T06:40:59,726 copying funvip/preset/fast.yaml -> build/lib/funvip/preset 2024-06-17T06:40:59,726 copying funvip/preset/accurate.yaml -> build/lib/funvip/preset 2024-06-17T06:40:59,727 creating build/lib/funvip/external/BLAST_Windows 2024-06-17T06:40:59,728 copying funvip/external/BLAST_Windows/Uninstall-ncbi-blast-2.12.0+.exe -> build/lib/funvip/external/BLAST_Windows 2024-06-17T06:40:59,728 creating build/lib/funvip/external/BLAST_Windows/bin 2024-06-17T06:40:59,729 copying funvip/external/BLAST_Windows/bin/blastn.exe -> build/lib/funvip/external/BLAST_Windows/bin 2024-06-17T06:40:59,730 copying funvip/external/BLAST_Windows/bin/cleanup-blastdb-volumes.py -> build/lib/funvip/external/BLAST_Windows/bin 2024-06-17T06:40:59,730 copying funvip/external/BLAST_Windows/bin/get_species_taxids.sh -> build/lib/funvip/external/BLAST_Windows/bin 2024-06-17T06:40:59,731 copying funvip/external/BLAST_Windows/bin/legacy_blast.pl -> build/lib/funvip/external/BLAST_Windows/bin 2024-06-17T06:40:59,731 copying funvip/external/BLAST_Windows/bin/makeblastdb.exe -> build/lib/funvip/external/BLAST_Windows/bin 2024-06-17T06:40:59,732 copying funvip/external/BLAST_Windows/bin/nghttp2.dll -> build/lib/funvip/external/BLAST_Windows/bin 2024-06-17T06:40:59,732 copying funvip/external/BLAST_Windows/bin/update_blastdb.pl -> build/lib/funvip/external/BLAST_Windows/bin 2024-06-17T06:40:59,733 creating build/lib/funvip/external/BLAST_Windows/doc 2024-06-17T06:40:59,733 copying funvip/external/BLAST_Windows/doc/README.txt -> build/lib/funvip/external/BLAST_Windows/doc 2024-06-17T06:40:59,734 creating build/lib/funvip/external/FastTree_Windows 2024-06-17T06:40:59,734 copying funvip/external/FastTree_Windows/FastTree.exe -> build/lib/funvip/external/FastTree_Windows 2024-06-17T06:40:59,735 creating build/lib/funvip/external/Gblocks_Windows_0.91b 2024-06-17T06:40:59,736 creating build/lib/funvip/external/Gblocks_Windows_0.91b/Gblocks_0.91b 2024-06-17T06:40:59,736 copying funvip/external/Gblocks_Windows_0.91b/Gblocks_0.91b/Gblocks.exe -> build/lib/funvip/external/Gblocks_Windows_0.91b/Gblocks_0.91b 2024-06-17T06:40:59,737 copying funvip/external/Gblocks_Windows_0.91b/Gblocks_0.91b/nad3.pir -> build/lib/funvip/external/Gblocks_Windows_0.91b/Gblocks_0.91b 2024-06-17T06:40:59,737 copying funvip/external/Gblocks_Windows_0.91b/Gblocks_0.91b/paths -> build/lib/funvip/external/Gblocks_Windows_0.91b/Gblocks_0.91b 2024-06-17T06:40:59,738 creating build/lib/funvip/external/Gblocks_Windows_0.91b/Gblocks_0.91b/Documentation 2024-06-17T06:40:59,738 copying funvip/external/Gblocks_Windows_0.91b/Gblocks_0.91b/Documentation/Gblocks_documentation.html -> build/lib/funvip/external/Gblocks_Windows_0.91b/Gblocks_0.91b/Documentation 2024-06-17T06:40:59,739 creating build/lib/funvip/external/Gblocks_Windows_0.91b/Gblocks_0.91b/more_alignments 2024-06-17T06:40:59,740 copying funvip/external/Gblocks_Windows_0.91b/Gblocks_0.91b/more_alignments/cox2.pir -> build/lib/funvip/external/Gblocks_Windows_0.91b/Gblocks_0.91b/more_alignments 2024-06-17T06:40:59,740 copying funvip/external/Gblocks_Windows_0.91b/Gblocks_0.91b/more_alignments/cytb.pir -> build/lib/funvip/external/Gblocks_Windows_0.91b/Gblocks_0.91b/more_alignments 2024-06-17T06:40:59,741 copying funvip/external/Gblocks_Windows_0.91b/Gblocks_0.91b/more_alignments/nad3.pir -> build/lib/funvip/external/Gblocks_Windows_0.91b/Gblocks_0.91b/more_alignments 2024-06-17T06:40:59,741 copying funvip/external/Gblocks_Windows_0.91b/Gblocks_0.91b/more_alignments/nad5.pir -> build/lib/funvip/external/Gblocks_Windows_0.91b/Gblocks_0.91b/more_alignments 2024-06-17T06:40:59,742 creating build/lib/funvip/external/RAxML_Windows 2024-06-17T06:40:59,743 copying funvip/external/RAxML_Windows/GPL-3.0.txt -> build/lib/funvip/external/RAxML_Windows 2024-06-17T06:40:59,746 copying funvip/external/RAxML_Windows/README -> build/lib/funvip/external/RAxML_Windows 2024-06-17T06:40:59,748 copying funvip/external/RAxML_Windows/raxmlHPC-PTHREADS-AVX2.exe -> build/lib/funvip/external/RAxML_Windows 2024-06-17T06:40:59,782 creating build/lib/funvip/external/iqtree 2024-06-17T06:40:59,783 copying funvip/external/iqtree/example.cf -> build/lib/funvip/external/iqtree 2024-06-17T06:40:59,819 copying funvip/external/iqtree/example.nex -> build/lib/funvip/external/iqtree 2024-06-17T06:40:59,821 copying funvip/external/iqtree/example.phy -> build/lib/funvip/external/iqtree 2024-06-17T06:40:59,824 copying funvip/external/iqtree/models.nex -> build/lib/funvip/external/iqtree 2024-06-17T06:40:59,828 creating build/lib/funvip/external/iqtree/bin 2024-06-17T06:40:59,829 copying funvip/external/iqtree/bin/iqtree2-click.exe -> build/lib/funvip/external/iqtree/bin 2024-06-17T06:41:00,000 copying funvip/external/iqtree/bin/iqtree2.exe -> build/lib/funvip/external/iqtree/bin 2024-06-17T06:41:00,168 copying funvip/external/iqtree/bin/libiomp5md.dll -> build/lib/funvip/external/iqtree/bin 2024-06-17T06:41:00,185 creating build/lib/funvip/external/mmseqs_Windows 2024-06-17T06:41:00,186 copying funvip/external/mmseqs_Windows/LICENSE.md -> build/lib/funvip/external/mmseqs_Windows 2024-06-17T06:41:00,189 copying funvip/external/mmseqs_Windows/README.md -> build/lib/funvip/external/mmseqs_Windows 2024-06-17T06:41:00,192 copying funvip/external/mmseqs_Windows/mmseqs.bat -> build/lib/funvip/external/mmseqs_Windows 2024-06-17T06:41:00,194 creating build/lib/funvip/external/mmseqs_Windows/bin 2024-06-17T06:41:00,195 copying funvip/external/mmseqs_Windows/bin/busybox.exe -> build/lib/funvip/external/mmseqs_Windows/bin 2024-06-17T06:41:00,206 copying funvip/external/mmseqs_Windows/bin/cygbz2-1.dll -> build/lib/funvip/external/mmseqs_Windows/bin 2024-06-17T06:41:00,210 copying funvip/external/mmseqs_Windows/bin/cyggcc_s-seh-1.dll -> build/lib/funvip/external/mmseqs_Windows/bin 2024-06-17T06:41:00,213 copying funvip/external/mmseqs_Windows/bin/cyggomp-1.dll -> build/lib/funvip/external/mmseqs_Windows/bin 2024-06-17T06:41:00,219 copying funvip/external/mmseqs_Windows/bin/cygstdc++-6.dll -> build/lib/funvip/external/mmseqs_Windows/bin 2024-06-17T06:41:00,251 copying funvip/external/mmseqs_Windows/bin/cygwin1.dll -> build/lib/funvip/external/mmseqs_Windows/bin 2024-06-17T06:41:00,309 copying funvip/external/mmseqs_Windows/bin/cygz.dll -> build/lib/funvip/external/mmseqs_Windows/bin 2024-06-17T06:41:00,313 copying funvip/external/mmseqs_Windows/bin/mmseqs.exe -> build/lib/funvip/external/mmseqs_Windows/bin 2024-06-17T06:41:00,504 creating build/lib/funvip/external/mmseqs_Windows/examples 2024-06-17T06:41:00,505 copying funvip/external/mmseqs_Windows/examples/QUERY.fasta -> build/lib/funvip/external/mmseqs_Windows/examples 2024-06-17T06:41:00,513 creating build/lib/funvip/external/mmseqs_Windows/matrices 2024-06-17T06:41:00,514 copying funvip/external/mmseqs_Windows/matrices/PAM10.out -> build/lib/funvip/external/mmseqs_Windows/matrices 2024-06-17T06:41:00,516 copying funvip/external/mmseqs_Windows/matrices/PAM100.out -> build/lib/funvip/external/mmseqs_Windows/matrices 2024-06-17T06:41:00,518 copying funvip/external/mmseqs_Windows/matrices/PAM110.out -> build/lib/funvip/external/mmseqs_Windows/matrices 2024-06-17T06:41:00,520 copying funvip/external/mmseqs_Windows/matrices/PAM120.out -> build/lib/funvip/external/mmseqs_Windows/matrices 2024-06-17T06:41:00,521 copying funvip/external/mmseqs_Windows/matrices/PAM130.out -> build/lib/funvip/external/mmseqs_Windows/matrices 2024-06-17T06:41:00,524 copying funvip/external/mmseqs_Windows/matrices/PAM140.out -> build/lib/funvip/external/mmseqs_Windows/matrices 2024-06-17T06:41:00,525 copying funvip/external/mmseqs_Windows/matrices/PAM150.out -> build/lib/funvip/external/mmseqs_Windows/matrices 2024-06-17T06:41:00,527 copying funvip/external/mmseqs_Windows/matrices/PAM160.out -> build/lib/funvip/external/mmseqs_Windows/matrices 2024-06-17T06:41:00,529 copying funvip/external/mmseqs_Windows/matrices/PAM170.out -> build/lib/funvip/external/mmseqs_Windows/matrices 2024-06-17T06:41:00,531 copying funvip/external/mmseqs_Windows/matrices/PAM180.out -> build/lib/funvip/external/mmseqs_Windows/matrices 2024-06-17T06:41:00,533 copying funvip/external/mmseqs_Windows/matrices/PAM190.out -> build/lib/funvip/external/mmseqs_Windows/matrices 2024-06-17T06:41:00,535 copying funvip/external/mmseqs_Windows/matrices/PAM20.out -> build/lib/funvip/external/mmseqs_Windows/matrices 2024-06-17T06:41:00,537 copying funvip/external/mmseqs_Windows/matrices/PAM30.out -> build/lib/funvip/external/mmseqs_Windows/matrices 2024-06-17T06:41:00,540 copying funvip/external/mmseqs_Windows/matrices/PAM40.out -> build/lib/funvip/external/mmseqs_Windows/matrices 2024-06-17T06:41:00,541 copying funvip/external/mmseqs_Windows/matrices/PAM50.out -> build/lib/funvip/external/mmseqs_Windows/matrices 2024-06-17T06:41:00,543 copying funvip/external/mmseqs_Windows/matrices/PAM60.out -> build/lib/funvip/external/mmseqs_Windows/matrices 2024-06-17T06:41:00,545 copying funvip/external/mmseqs_Windows/matrices/PAM70.out -> build/lib/funvip/external/mmseqs_Windows/matrices 2024-06-17T06:41:00,547 copying funvip/external/mmseqs_Windows/matrices/PAM80.out -> build/lib/funvip/external/mmseqs_Windows/matrices 2024-06-17T06:41:00,549 copying funvip/external/mmseqs_Windows/matrices/PAM90.out -> build/lib/funvip/external/mmseqs_Windows/matrices 2024-06-17T06:41:00,551 copying funvip/external/mmseqs_Windows/matrices/VTML10.out -> build/lib/funvip/external/mmseqs_Windows/matrices 2024-06-17T06:41:00,553 copying funvip/external/mmseqs_Windows/matrices/VTML120.out -> build/lib/funvip/external/mmseqs_Windows/matrices 2024-06-17T06:41:00,555 copying funvip/external/mmseqs_Windows/matrices/VTML160.out -> build/lib/funvip/external/mmseqs_Windows/matrices 2024-06-17T06:41:00,557 copying funvip/external/mmseqs_Windows/matrices/VTML20.out -> build/lib/funvip/external/mmseqs_Windows/matrices 2024-06-17T06:41:00,560 copying funvip/external/mmseqs_Windows/matrices/VTML40.out -> build/lib/funvip/external/mmseqs_Windows/matrices 2024-06-17T06:41:00,562 copying funvip/external/mmseqs_Windows/matrices/VTML80.out -> build/lib/funvip/external/mmseqs_Windows/matrices 2024-06-17T06:41:00,564 copying funvip/external/mmseqs_Windows/matrices/blosum100.out -> build/lib/funvip/external/mmseqs_Windows/matrices 2024-06-17T06:41:00,566 copying funvip/external/mmseqs_Windows/matrices/blosum30.out -> build/lib/funvip/external/mmseqs_Windows/matrices 2024-06-17T06:41:00,569 copying funvip/external/mmseqs_Windows/matrices/blosum35.out -> build/lib/funvip/external/mmseqs_Windows/matrices 2024-06-17T06:41:00,571 copying funvip/external/mmseqs_Windows/matrices/blosum40.out -> build/lib/funvip/external/mmseqs_Windows/matrices 2024-06-17T06:41:00,573 copying funvip/external/mmseqs_Windows/matrices/blosum45.out -> build/lib/funvip/external/mmseqs_Windows/matrices 2024-06-17T06:41:00,575 copying funvip/external/mmseqs_Windows/matrices/blosum50.out -> build/lib/funvip/external/mmseqs_Windows/matrices 2024-06-17T06:41:00,577 copying funvip/external/mmseqs_Windows/matrices/blosum55.out -> build/lib/funvip/external/mmseqs_Windows/matrices 2024-06-17T06:41:00,579 copying funvip/external/mmseqs_Windows/matrices/blosum60.out -> build/lib/funvip/external/mmseqs_Windows/matrices 2024-06-17T06:41:00,581 copying funvip/external/mmseqs_Windows/matrices/blosum62.out -> build/lib/funvip/external/mmseqs_Windows/matrices 2024-06-17T06:41:00,583 copying funvip/external/mmseqs_Windows/matrices/blosum65.out -> build/lib/funvip/external/mmseqs_Windows/matrices 2024-06-17T06:41:00,585 copying funvip/external/mmseqs_Windows/matrices/blosum70.out -> build/lib/funvip/external/mmseqs_Windows/matrices 2024-06-17T06:41:00,587 copying funvip/external/mmseqs_Windows/matrices/blosum75.out -> build/lib/funvip/external/mmseqs_Windows/matrices 2024-06-17T06:41:00,589 copying funvip/external/mmseqs_Windows/matrices/blosum80.out -> build/lib/funvip/external/mmseqs_Windows/matrices 2024-06-17T06:41:00,591 copying funvip/external/mmseqs_Windows/matrices/blosum85.out -> build/lib/funvip/external/mmseqs_Windows/matrices 2024-06-17T06:41:00,593 copying funvip/external/mmseqs_Windows/matrices/blosum90.out -> build/lib/funvip/external/mmseqs_Windows/matrices 2024-06-17T06:41:00,595 copying funvip/external/mmseqs_Windows/matrices/blosum95.out -> build/lib/funvip/external/mmseqs_Windows/matrices 2024-06-17T06:41:00,597 copying funvip/external/mmseqs_Windows/matrices/nucleotide.out -> build/lib/funvip/external/mmseqs_Windows/matrices 2024-06-17T06:41:00,599 creating build/lib/funvip/external/mmseqs_Windows/util 2024-06-17T06:41:00,600 copying funvip/external/mmseqs_Windows/util/bash-completion.sh -> build/lib/funvip/external/mmseqs_Windows/util 2024-06-17T06:41:00,602 creating build/lib/funvip/external/trimal.v1.4 2024-06-17T06:41:00,603 creating build/lib/funvip/external/trimal.v1.4/trimAl 2024-06-17T06:41:00,604 copying funvip/external/trimal.v1.4/trimAl/AUTHORS -> build/lib/funvip/external/trimal.v1.4/trimAl 2024-06-17T06:41:00,606 copying funvip/external/trimal.v1.4/trimAl/CHANGELOG -> build/lib/funvip/external/trimal.v1.4/trimAl 2024-06-17T06:41:00,609 copying funvip/external/trimal.v1.4/trimAl/LICENSE -> build/lib/funvip/external/trimal.v1.4/trimAl 2024-06-17T06:41:00,612 copying funvip/external/trimal.v1.4/trimAl/README -> build/lib/funvip/external/trimal.v1.4/trimAl 2024-06-17T06:41:00,614 creating build/lib/funvip/external/trimal.v1.4/trimAl/bin 2024-06-17T06:41:00,615 copying funvip/external/trimal.v1.4/trimAl/bin/libgcc_s_dw2-1.dll -> build/lib/funvip/external/trimal.v1.4/trimAl/bin 2024-06-17T06:41:00,632 copying funvip/external/trimal.v1.4/trimAl/bin/libstdc++-6.dll -> build/lib/funvip/external/trimal.v1.4/trimAl/bin 2024-06-17T06:41:00,655 copying funvip/external/trimal.v1.4/trimAl/bin/trimal.exe -> build/lib/funvip/external/trimal.v1.4/trimAl/bin 2024-06-17T06:41:00,662 creating build/lib/funvip/external/trimal.v1.4/trimAl/scripts 2024-06-17T06:41:00,663 copying funvip/external/trimal.v1.4/trimAl/scripts/check_codon_alignments.py -> build/lib/funvip/external/trimal.v1.4/trimAl/scripts 2024-06-17T06:41:00,666 copying funvip/external/trimal.v1.4/trimAl/scripts/compare_trimmed_msas.sh -> build/lib/funvip/external/trimal.v1.4/trimAl/scripts 2024-06-17T06:41:00,668 copying funvip/external/trimal.v1.4/trimAl/scripts/generateRandomAlignmentsUsingAsSeedRealAlignments.py -> build/lib/funvip/external/trimal.v1.4/trimAl/scripts 2024-06-17T06:41:00,670 copying funvip/external/trimal.v1.4/trimAl/scripts/generate_trimmed_msas.sh -> build/lib/funvip/external/trimal.v1.4/trimAl/scripts 2024-06-17T06:41:00,674 copying funvip/external/trimal.v1.4/trimAl/scripts/get_sequence_representative_from_alignment.py -> build/lib/funvip/external/trimal.v1.4/trimAl/scripts 2024-06-17T06:41:00,676 copying funvip/external/trimal.v1.4/trimAl/scripts/get_sequences_gaps_ratio.py -> build/lib/funvip/external/trimal.v1.4/trimAl/scripts 2024-06-17T06:41:00,678 copying funvip/external/trimal.v1.4/trimAl/scripts/remove_shorter_sequences.py -> build/lib/funvip/external/trimal.v1.4/trimAl/scripts 2024-06-17T06:41:00,680 copying funvip/external/trimal.v1.4/trimAl/scripts/selective_trimming_for_dNdS_analyses.based_neighbours.py -> build/lib/funvip/external/trimal.v1.4/trimAl/scripts 2024-06-17T06:41:00,683 copying funvip/external/trimal.v1.4/trimAl/scripts/set_manual_boundaries.py -> build/lib/funvip/external/trimal.v1.4/trimAl/scripts 2024-06-17T06:41:00,685 creating build/lib/funvip/external/trimal.v1.4/trimAl/source 2024-06-17T06:41:00,686 copying funvip/external/trimal.v1.4/trimAl/source/alignment.cpp -> build/lib/funvip/external/trimal.v1.4/trimAl/source 2024-06-17T06:41:00,691 copying funvip/external/trimal.v1.4/trimAl/source/alignment.h -> build/lib/funvip/external/trimal.v1.4/trimAl/source 2024-06-17T06:41:00,694 copying funvip/external/trimal.v1.4/trimAl/source/alignment.o -> build/lib/funvip/external/trimal.v1.4/trimAl/source 2024-06-17T06:41:00,698 copying funvip/external/trimal.v1.4/trimAl/source/autAlignment.cpp -> build/lib/funvip/external/trimal.v1.4/trimAl/source 2024-06-17T06:41:00,701 copying funvip/external/trimal.v1.4/trimAl/source/autAlignment.o -> build/lib/funvip/external/trimal.v1.4/trimAl/source 2024-06-17T06:41:00,703 copying funvip/external/trimal.v1.4/trimAl/source/compareFiles.cpp -> build/lib/funvip/external/trimal.v1.4/trimAl/source 2024-06-17T06:41:00,706 copying funvip/external/trimal.v1.4/trimAl/source/compareFiles.h -> build/lib/funvip/external/trimal.v1.4/trimAl/source 2024-06-17T06:41:00,708 copying funvip/external/trimal.v1.4/trimAl/source/compareFiles.o -> build/lib/funvip/external/trimal.v1.4/trimAl/source 2024-06-17T06:41:00,711 copying funvip/external/trimal.v1.4/trimAl/source/defines.h -> build/lib/funvip/external/trimal.v1.4/trimAl/source 2024-06-17T06:41:00,713 copying funvip/external/trimal.v1.4/trimAl/source/main.cpp -> build/lib/funvip/external/trimal.v1.4/trimAl/source 2024-06-17T06:41:00,717 copying funvip/external/trimal.v1.4/trimAl/source/makefile -> build/lib/funvip/external/trimal.v1.4/trimAl/source 2024-06-17T06:41:00,719 copying funvip/external/trimal.v1.4/trimAl/source/makefile.MacOS -> build/lib/funvip/external/trimal.v1.4/trimAl/source 2024-06-17T06:41:00,721 copying funvip/external/trimal.v1.4/trimAl/source/readAl.cpp -> build/lib/funvip/external/trimal.v1.4/trimAl/source 2024-06-17T06:41:00,723 copying funvip/external/trimal.v1.4/trimAl/source/readal.exe -> build/lib/funvip/external/trimal.v1.4/trimAl/source 2024-06-17T06:41:00,731 copying funvip/external/trimal.v1.4/trimAl/source/rwAlignment.cpp -> build/lib/funvip/external/trimal.v1.4/trimAl/source 2024-06-17T06:41:00,735 copying funvip/external/trimal.v1.4/trimAl/source/rwAlignment.o -> build/lib/funvip/external/trimal.v1.4/trimAl/source 2024-06-17T06:41:00,739 copying funvip/external/trimal.v1.4/trimAl/source/sequencesMatrix.cpp -> build/lib/funvip/external/trimal.v1.4/trimAl/source 2024-06-17T06:41:00,742 copying funvip/external/trimal.v1.4/trimAl/source/sequencesMatrix.h -> build/lib/funvip/external/trimal.v1.4/trimAl/source 2024-06-17T06:41:00,745 copying funvip/external/trimal.v1.4/trimAl/source/sequencesMatrix.o -> build/lib/funvip/external/trimal.v1.4/trimAl/source 2024-06-17T06:41:00,748 copying funvip/external/trimal.v1.4/trimAl/source/similarityMatrix.cpp -> build/lib/funvip/external/trimal.v1.4/trimAl/source 2024-06-17T06:41:00,751 copying funvip/external/trimal.v1.4/trimAl/source/similarityMatrix.h -> build/lib/funvip/external/trimal.v1.4/trimAl/source 2024-06-17T06:41:00,753 copying funvip/external/trimal.v1.4/trimAl/source/similarityMatrix.o -> build/lib/funvip/external/trimal.v1.4/trimAl/source 2024-06-17T06:41:00,756 copying funvip/external/trimal.v1.4/trimAl/source/statAl.cpp -> build/lib/funvip/external/trimal.v1.4/trimAl/source 2024-06-17T06:41:00,760 copying funvip/external/trimal.v1.4/trimAl/source/statal.exe -> build/lib/funvip/external/trimal.v1.4/trimAl/source 2024-06-17T06:41:00,768 copying funvip/external/trimal.v1.4/trimAl/source/statisticsConservation.cpp -> build/lib/funvip/external/trimal.v1.4/trimAl/source 2024-06-17T06:41:00,772 copying funvip/external/trimal.v1.4/trimAl/source/statisticsConservation.h -> build/lib/funvip/external/trimal.v1.4/trimAl/source 2024-06-17T06:41:00,774 copying funvip/external/trimal.v1.4/trimAl/source/statisticsConservation.o -> build/lib/funvip/external/trimal.v1.4/trimAl/source 2024-06-17T06:41:00,777 copying funvip/external/trimal.v1.4/trimAl/source/statisticsFiles.cpp -> build/lib/funvip/external/trimal.v1.4/trimAl/source 2024-06-17T06:41:00,780 copying funvip/external/trimal.v1.4/trimAl/source/statisticsFiles.h -> build/lib/funvip/external/trimal.v1.4/trimAl/source 2024-06-17T06:41:00,782 copying funvip/external/trimal.v1.4/trimAl/source/statisticsGaps.cpp -> build/lib/funvip/external/trimal.v1.4/trimAl/source 2024-06-17T06:41:00,785 copying funvip/external/trimal.v1.4/trimAl/source/statisticsGaps.h -> build/lib/funvip/external/trimal.v1.4/trimAl/source 2024-06-17T06:41:00,788 copying funvip/external/trimal.v1.4/trimAl/source/statisticsGaps.o -> build/lib/funvip/external/trimal.v1.4/trimAl/source 2024-06-17T06:41:00,790 copying funvip/external/trimal.v1.4/trimAl/source/utils.cpp -> build/lib/funvip/external/trimal.v1.4/trimAl/source 2024-06-17T06:41:00,794 copying funvip/external/trimal.v1.4/trimAl/source/utils.h -> build/lib/funvip/external/trimal.v1.4/trimAl/source 2024-06-17T06:41:00,796 copying funvip/external/trimal.v1.4/trimAl/source/utils.o -> build/lib/funvip/external/trimal.v1.4/trimAl/source 2024-06-17T06:41:00,800 copying funvip/external/trimal.v1.4/trimAl/source/values.h -> build/lib/funvip/external/trimal.v1.4/trimAl/source 2024-06-17T06:41:00,802 copying funvip/preset/.gitignore -> build/lib/funvip/preset 2024-06-17T06:41:00,805 copying funvip/src/.gitignore -> build/lib/funvip/src 2024-06-17T06:41:00,807 creating build/lib/funvip/src/__pycache__ 2024-06-17T06:41:00,809 copying funvip/src/__pycache__/CATV_pipe.cpython-310.pyc -> build/lib/funvip/src/__pycache__ 2024-06-17T06:41:00,812 copying funvip/src/__pycache__/CAT_V.cpython-310.pyc -> build/lib/funvip/src/__pycache__ 2024-06-17T06:41:00,815 copying funvip/src/__pycache__/CAT_V.cpython-39.pyc -> build/lib/funvip/src/__pycache__ 2024-06-17T06:41:00,818 copying funvip/src/__pycache__/CAT_V_pipe.cpython-39.pyc -> build/lib/funvip/src/__pycache__ 2024-06-17T06:41:00,820 copying funvip/src/__pycache__/__init__.cpython-310.pyc -> build/lib/funvip/src/__pycache__ 2024-06-17T06:41:00,822 copying funvip/src/__pycache__/__init__.cpython-39.pyc -> build/lib/funvip/src/__pycache__ 2024-06-17T06:41:00,824 copying funvip/src/__pycache__/align.cpython-310.pyc -> build/lib/funvip/src/__pycache__ 2024-06-17T06:41:00,827 copying funvip/src/__pycache__/cluster.cpython-39.pyc -> build/lib/funvip/src/__pycache__ 2024-06-17T06:41:00,836 copying funvip/src/__pycache__/dataset.cpython-39.pyc -> build/lib/funvip/src/__pycache__ 2024-06-17T06:41:00,839 copying funvip/src/__pycache__/ext.cpython-310.pyc -> build/lib/funvip/src/__pycache__ 2024-06-17T06:41:00,842 copying funvip/src/__pycache__/ext.cpython-39.pyc -> build/lib/funvip/src/__pycache__ 2024-06-17T06:41:00,844 copying funvip/src/__pycache__/hasher.cpython-39.pyc -> build/lib/funvip/src/__pycache__ 2024-06-17T06:41:00,846 copying funvip/src/__pycache__/initialize.cpython-39.pyc -> build/lib/funvip/src/__pycache__ 2024-06-17T06:41:00,849 copying funvip/src/__pycache__/io.cpython-310.pyc -> build/lib/funvip/src/__pycache__ 2024-06-17T06:41:00,852 copying funvip/src/__pycache__/io.cpython-39.pyc -> build/lib/funvip/src/__pycache__ 2024-06-17T06:41:00,854 copying funvip/src/__pycache__/logger.cpython-39.pyc -> build/lib/funvip/src/__pycache__ 2024-06-17T06:41:00,857 copying funvip/src/__pycache__/modeltest.cpython-39.pyc -> build/lib/funvip/src/__pycache__ 2024-06-17T06:41:00,859 copying funvip/src/__pycache__/multigene.cpython-39.pyc -> build/lib/funvip/src/__pycache__ 2024-06-17T06:41:00,862 copying funvip/src/__pycache__/ncbi.cpython-39.pyc -> build/lib/funvip/src/__pycache__ 2024-06-17T06:41:00,864 copying funvip/src/__pycache__/opt_generator.cpython-39.pyc -> build/lib/funvip/src/__pycache__ 2024-06-17T06:41:00,866 copying funvip/src/__pycache__/reporter.cpython-39.pyc -> build/lib/funvip/src/__pycache__ 2024-06-17T06:41:00,869 copying funvip/src/__pycache__/search.cpython-39.pyc -> build/lib/funvip/src/__pycache__ 2024-06-17T06:41:00,871 copying funvip/src/__pycache__/tool.cpython-39.pyc -> build/lib/funvip/src/__pycache__ 2024-06-17T06:41:00,874 copying funvip/src/__pycache__/validation.cpython-39.pyc -> build/lib/funvip/src/__pycache__ 2024-06-17T06:41:00,875 copying funvip/src/__pycache__/visualize.cpython-39.pyc -> build/lib/funvip/src/__pycache__ 2024-06-17T06:41:00,877 creating build/lib/funvip/src/templates 2024-06-17T06:41:00,878 copying funvip/src/templates/template.html -> build/lib/funvip/src/templates 2024-06-17T06:41:00,880 creating build/lib/funvip/test_dataset 2024-06-17T06:41:00,881 creating build/lib/funvip/test_dataset/penicillium 2024-06-17T06:41:00,882 copying funvip/test_dataset/penicillium/Options.config -> build/lib/funvip/test_dataset/penicillium 2024-06-17T06:41:00,884 copying funvip/test_dataset/penicillium/preset.yaml -> build/lib/funvip/test_dataset/penicillium 2024-06-17T06:41:00,886 creating build/lib/funvip/test_dataset/penicillium/DB 2024-06-17T06:41:00,887 copying funvip/test_dataset/penicillium/DB/DB_Penicillium.xlsx -> build/lib/funvip/test_dataset/penicillium/DB 2024-06-17T06:41:00,895 creating build/lib/funvip/test_dataset/penicillium/Query 2024-06-17T06:41:00,896 copying funvip/test_dataset/penicillium/Query/Query.xlsx -> build/lib/funvip/test_dataset/penicillium/Query 2024-06-17T06:41:00,899 creating build/lib/funvip/test_dataset/terrei 2024-06-17T06:41:00,900 copying funvip/test_dataset/terrei/preset.yaml -> build/lib/funvip/test_dataset/terrei 2024-06-17T06:41:00,902 creating build/lib/funvip/test_dataset/terrei/DB 2024-06-17T06:41:00,904 copying funvip/test_dataset/terrei/DB/FunVIP_Aspergillus_db.xlsx -> build/lib/funvip/test_dataset/terrei/DB 2024-06-17T06:41:00,906 creating build/lib/funvip/test_dataset/terrei/Query 2024-06-17T06:41:00,907 copying funvip/test_dataset/terrei/Query/FunVIP_Aspergillus_query.xlsx -> build/lib/funvip/test_dataset/terrei/Query 2024-06-17T06:41:00,920 installing to build/bdist.linux-armv7l/wheel 2024-06-17T06:41:00,920 running install 2024-06-17T06:41:00,945 running install_lib 2024-06-17T06:41:00,949 creating build/bdist.linux-armv7l 2024-06-17T06:41:00,949 creating build/bdist.linux-armv7l/wheel 2024-06-17T06:41:00,951 creating build/bdist.linux-armv7l/wheel/funvip 2024-06-17T06:41:00,952 copying build/lib/funvip/FunVIP_GUI.py -> build/bdist.linux-armv7l/wheel/funvip 2024-06-17T06:41:00,955 creating build/bdist.linux-armv7l/wheel/funvip/data 2024-06-17T06:41:00,956 copying build/lib/funvip/data/__init__.py -> build/bdist.linux-armv7l/wheel/funvip/data 2024-06-17T06:41:00,957 copying build/lib/funvip/data/genus_line.txt -> build/bdist.linux-armv7l/wheel/funvip/data 2024-06-17T06:41:00,960 copying build/lib/funvip/data/Option_manager.xlsx -> build/bdist.linux-armv7l/wheel/funvip/data 2024-06-17T06:41:00,964 creating build/bdist.linux-armv7l/wheel/funvip/external 2024-06-17T06:41:00,965 creating build/bdist.linux-armv7l/wheel/funvip/external/mmseqs_Windows 2024-06-17T06:41:00,966 creating build/bdist.linux-armv7l/wheel/funvip/external/mmseqs_Windows/util 2024-06-17T06:41:00,968 copying build/lib/funvip/external/mmseqs_Windows/util/bash-completion.sh -> build/bdist.linux-armv7l/wheel/funvip/external/mmseqs_Windows/util 2024-06-17T06:41:00,970 copying build/lib/funvip/external/mmseqs_Windows/LICENSE.md -> build/bdist.linux-armv7l/wheel/funvip/external/mmseqs_Windows 2024-06-17T06:41:00,973 copying build/lib/funvip/external/mmseqs_Windows/README.md -> build/bdist.linux-armv7l/wheel/funvip/external/mmseqs_Windows 2024-06-17T06:41:00,975 copying build/lib/funvip/external/mmseqs_Windows/mmseqs.bat -> build/bdist.linux-armv7l/wheel/funvip/external/mmseqs_Windows 2024-06-17T06:41:00,977 creating build/bdist.linux-armv7l/wheel/funvip/external/mmseqs_Windows/examples 2024-06-17T06:41:00,978 copying build/lib/funvip/external/mmseqs_Windows/examples/QUERY.fasta -> build/bdist.linux-armv7l/wheel/funvip/external/mmseqs_Windows/examples 2024-06-17T06:41:00,986 creating build/bdist.linux-armv7l/wheel/funvip/external/mmseqs_Windows/bin 2024-06-17T06:41:00,987 copying build/lib/funvip/external/mmseqs_Windows/bin/mmseqs.exe -> build/bdist.linux-armv7l/wheel/funvip/external/mmseqs_Windows/bin 2024-06-17T06:41:01,177 copying build/lib/funvip/external/mmseqs_Windows/bin/cygbz2-1.dll -> build/bdist.linux-armv7l/wheel/funvip/external/mmseqs_Windows/bin 2024-06-17T06:41:01,180 copying build/lib/funvip/external/mmseqs_Windows/bin/cyggcc_s-seh-1.dll -> build/bdist.linux-armv7l/wheel/funvip/external/mmseqs_Windows/bin 2024-06-17T06:41:01,184 copying build/lib/funvip/external/mmseqs_Windows/bin/cygwin1.dll -> build/bdist.linux-armv7l/wheel/funvip/external/mmseqs_Windows/bin 2024-06-17T06:41:01,236 copying build/lib/funvip/external/mmseqs_Windows/bin/cygstdc++-6.dll -> build/bdist.linux-armv7l/wheel/funvip/external/mmseqs_Windows/bin 2024-06-17T06:41:01,265 copying build/lib/funvip/external/mmseqs_Windows/bin/cyggomp-1.dll -> build/bdist.linux-armv7l/wheel/funvip/external/mmseqs_Windows/bin 2024-06-17T06:41:01,271 copying build/lib/funvip/external/mmseqs_Windows/bin/busybox.exe -> build/bdist.linux-armv7l/wheel/funvip/external/mmseqs_Windows/bin 2024-06-17T06:41:01,282 copying build/lib/funvip/external/mmseqs_Windows/bin/cygz.dll -> build/bdist.linux-armv7l/wheel/funvip/external/mmseqs_Windows/bin 2024-06-17T06:41:01,287 creating build/bdist.linux-armv7l/wheel/funvip/external/mmseqs_Windows/matrices 2024-06-17T06:41:01,287 copying build/lib/funvip/external/mmseqs_Windows/matrices/VTML80.out -> build/bdist.linux-armv7l/wheel/funvip/external/mmseqs_Windows/matrices 2024-06-17T06:41:01,290 copying build/lib/funvip/external/mmseqs_Windows/matrices/PAM120.out -> build/bdist.linux-armv7l/wheel/funvip/external/mmseqs_Windows/matrices 2024-06-17T06:41:01,291 copying build/lib/funvip/external/mmseqs_Windows/matrices/PAM60.out -> build/bdist.linux-armv7l/wheel/funvip/external/mmseqs_Windows/matrices 2024-06-17T06:41:01,293 copying build/lib/funvip/external/mmseqs_Windows/matrices/PAM50.out -> build/bdist.linux-armv7l/wheel/funvip/external/mmseqs_Windows/matrices 2024-06-17T06:41:01,295 copying build/lib/funvip/external/mmseqs_Windows/matrices/blosum65.out -> build/bdist.linux-armv7l/wheel/funvip/external/mmseqs_Windows/matrices 2024-06-17T06:41:01,296 copying build/lib/funvip/external/mmseqs_Windows/matrices/PAM70.out -> build/bdist.linux-armv7l/wheel/funvip/external/mmseqs_Windows/matrices 2024-06-17T06:41:01,298 copying build/lib/funvip/external/mmseqs_Windows/matrices/VTML10.out -> build/bdist.linux-armv7l/wheel/funvip/external/mmseqs_Windows/matrices 2024-06-17T06:41:01,300 copying build/lib/funvip/external/mmseqs_Windows/matrices/PAM90.out -> build/bdist.linux-armv7l/wheel/funvip/external/mmseqs_Windows/matrices 2024-06-17T06:41:01,302 copying build/lib/funvip/external/mmseqs_Windows/matrices/PAM80.out -> build/bdist.linux-armv7l/wheel/funvip/external/mmseqs_Windows/matrices 2024-06-17T06:41:01,303 copying build/lib/funvip/external/mmseqs_Windows/matrices/VTML20.out -> build/bdist.linux-armv7l/wheel/funvip/external/mmseqs_Windows/matrices 2024-06-17T06:41:01,305 copying build/lib/funvip/external/mmseqs_Windows/matrices/PAM10.out -> build/bdist.linux-armv7l/wheel/funvip/external/mmseqs_Windows/matrices 2024-06-17T06:41:01,307 copying build/lib/funvip/external/mmseqs_Windows/matrices/blosum90.out -> build/bdist.linux-armv7l/wheel/funvip/external/mmseqs_Windows/matrices 2024-06-17T06:41:01,309 copying build/lib/funvip/external/mmseqs_Windows/matrices/PAM190.out -> build/bdist.linux-armv7l/wheel/funvip/external/mmseqs_Windows/matrices 2024-06-17T06:41:01,311 copying build/lib/funvip/external/mmseqs_Windows/matrices/blosum85.out -> build/bdist.linux-armv7l/wheel/funvip/external/mmseqs_Windows/matrices 2024-06-17T06:41:01,312 copying build/lib/funvip/external/mmseqs_Windows/matrices/blosum40.out -> build/bdist.linux-armv7l/wheel/funvip/external/mmseqs_Windows/matrices 2024-06-17T06:41:01,314 copying build/lib/funvip/external/mmseqs_Windows/matrices/blosum70.out -> build/bdist.linux-armv7l/wheel/funvip/external/mmseqs_Windows/matrices 2024-06-17T06:41:01,316 copying build/lib/funvip/external/mmseqs_Windows/matrices/blosum62.out -> build/bdist.linux-armv7l/wheel/funvip/external/mmseqs_Windows/matrices 2024-06-17T06:41:01,318 copying build/lib/funvip/external/mmseqs_Windows/matrices/blosum55.out -> build/bdist.linux-armv7l/wheel/funvip/external/mmseqs_Windows/matrices 2024-06-17T06:41:01,320 copying build/lib/funvip/external/mmseqs_Windows/matrices/PAM180.out -> build/bdist.linux-armv7l/wheel/funvip/external/mmseqs_Windows/matrices 2024-06-17T06:41:01,322 copying build/lib/funvip/external/mmseqs_Windows/matrices/blosum95.out -> build/bdist.linux-armv7l/wheel/funvip/external/mmseqs_Windows/matrices 2024-06-17T06:41:01,323 copying build/lib/funvip/external/mmseqs_Windows/matrices/blosum30.out -> build/bdist.linux-armv7l/wheel/funvip/external/mmseqs_Windows/matrices 2024-06-17T06:41:01,325 copying build/lib/funvip/external/mmseqs_Windows/matrices/blosum45.out -> build/bdist.linux-armv7l/wheel/funvip/external/mmseqs_Windows/matrices 2024-06-17T06:41:01,327 copying build/lib/funvip/external/mmseqs_Windows/matrices/PAM20.out -> build/bdist.linux-armv7l/wheel/funvip/external/mmseqs_Windows/matrices 2024-06-17T06:41:01,329 copying build/lib/funvip/external/mmseqs_Windows/matrices/PAM140.out -> build/bdist.linux-armv7l/wheel/funvip/external/mmseqs_Windows/matrices 2024-06-17T06:41:01,331 copying build/lib/funvip/external/mmseqs_Windows/matrices/PAM110.out -> build/bdist.linux-armv7l/wheel/funvip/external/mmseqs_Windows/matrices 2024-06-17T06:41:01,332 copying build/lib/funvip/external/mmseqs_Windows/matrices/PAM160.out -> build/bdist.linux-armv7l/wheel/funvip/external/mmseqs_Windows/matrices 2024-06-17T06:41:01,334 copying build/lib/funvip/external/mmseqs_Windows/matrices/blosum60.out -> build/bdist.linux-armv7l/wheel/funvip/external/mmseqs_Windows/matrices 2024-06-17T06:41:01,336 copying build/lib/funvip/external/mmseqs_Windows/matrices/blosum50.out -> build/bdist.linux-armv7l/wheel/funvip/external/mmseqs_Windows/matrices 2024-06-17T06:41:01,338 copying build/lib/funvip/external/mmseqs_Windows/matrices/blosum35.out -> build/bdist.linux-armv7l/wheel/funvip/external/mmseqs_Windows/matrices 2024-06-17T06:41:01,340 copying build/lib/funvip/external/mmseqs_Windows/matrices/PAM170.out -> build/bdist.linux-armv7l/wheel/funvip/external/mmseqs_Windows/matrices 2024-06-17T06:41:01,342 copying build/lib/funvip/external/mmseqs_Windows/matrices/PAM30.out -> build/bdist.linux-armv7l/wheel/funvip/external/mmseqs_Windows/matrices 2024-06-17T06:41:01,343 copying build/lib/funvip/external/mmseqs_Windows/matrices/nucleotide.out -> build/bdist.linux-armv7l/wheel/funvip/external/mmseqs_Windows/matrices 2024-06-17T06:41:01,345 copying build/lib/funvip/external/mmseqs_Windows/matrices/PAM40.out -> build/bdist.linux-armv7l/wheel/funvip/external/mmseqs_Windows/matrices 2024-06-17T06:41:01,347 copying build/lib/funvip/external/mmseqs_Windows/matrices/VTML160.out -> build/bdist.linux-armv7l/wheel/funvip/external/mmseqs_Windows/matrices 2024-06-17T06:41:01,348 copying build/lib/funvip/external/mmseqs_Windows/matrices/blosum100.out -> build/bdist.linux-armv7l/wheel/funvip/external/mmseqs_Windows/matrices 2024-06-17T06:41:01,350 copying build/lib/funvip/external/mmseqs_Windows/matrices/blosum75.out -> build/bdist.linux-armv7l/wheel/funvip/external/mmseqs_Windows/matrices 2024-06-17T06:41:01,352 copying build/lib/funvip/external/mmseqs_Windows/matrices/VTML120.out -> build/bdist.linux-armv7l/wheel/funvip/external/mmseqs_Windows/matrices 2024-06-17T06:41:01,354 copying build/lib/funvip/external/mmseqs_Windows/matrices/blosum80.out -> build/bdist.linux-armv7l/wheel/funvip/external/mmseqs_Windows/matrices 2024-06-17T06:41:01,356 copying build/lib/funvip/external/mmseqs_Windows/matrices/PAM150.out -> build/bdist.linux-armv7l/wheel/funvip/external/mmseqs_Windows/matrices 2024-06-17T06:41:01,357 copying build/lib/funvip/external/mmseqs_Windows/matrices/PAM100.out -> build/bdist.linux-armv7l/wheel/funvip/external/mmseqs_Windows/matrices 2024-06-17T06:41:01,359 copying build/lib/funvip/external/mmseqs_Windows/matrices/PAM130.out -> build/bdist.linux-armv7l/wheel/funvip/external/mmseqs_Windows/matrices 2024-06-17T06:41:01,361 copying build/lib/funvip/external/mmseqs_Windows/matrices/VTML40.out -> build/bdist.linux-armv7l/wheel/funvip/external/mmseqs_Windows/matrices 2024-06-17T06:41:01,363 creating build/bdist.linux-armv7l/wheel/funvip/external/RAxML_Windows 2024-06-17T06:41:01,364 copying build/lib/funvip/external/RAxML_Windows/GPL-3.0.txt -> build/bdist.linux-armv7l/wheel/funvip/external/RAxML_Windows 2024-06-17T06:41:01,367 copying build/lib/funvip/external/RAxML_Windows/raxmlHPC-PTHREADS-AVX2.exe -> build/bdist.linux-armv7l/wheel/funvip/external/RAxML_Windows 2024-06-17T06:41:01,393 copying build/lib/funvip/external/RAxML_Windows/README -> build/bdist.linux-armv7l/wheel/funvip/external/RAxML_Windows 2024-06-17T06:41:01,395 creating build/bdist.linux-armv7l/wheel/funvip/external/trimal.v1.4 2024-06-17T06:41:01,397 creating build/bdist.linux-armv7l/wheel/funvip/external/trimal.v1.4/trimAl 2024-06-17T06:41:01,398 creating build/bdist.linux-armv7l/wheel/funvip/external/trimal.v1.4/trimAl/scripts 2024-06-17T06:41:01,400 copying build/lib/funvip/external/trimal.v1.4/trimAl/scripts/generateRandomAlignmentsUsingAsSeedRealAlignments.py -> build/bdist.linux-armv7l/wheel/funvip/external/trimal.v1.4/trimAl/scripts 2024-06-17T06:41:01,402 copying build/lib/funvip/external/trimal.v1.4/trimAl/scripts/compare_trimmed_msas.sh -> build/bdist.linux-armv7l/wheel/funvip/external/trimal.v1.4/trimAl/scripts 2024-06-17T06:41:01,405 copying build/lib/funvip/external/trimal.v1.4/trimAl/scripts/remove_shorter_sequences.py -> build/bdist.linux-armv7l/wheel/funvip/external/trimal.v1.4/trimAl/scripts 2024-06-17T06:41:01,407 copying build/lib/funvip/external/trimal.v1.4/trimAl/scripts/get_sequences_gaps_ratio.py -> build/bdist.linux-armv7l/wheel/funvip/external/trimal.v1.4/trimAl/scripts 2024-06-17T06:41:01,409 copying build/lib/funvip/external/trimal.v1.4/trimAl/scripts/check_codon_alignments.py -> build/bdist.linux-armv7l/wheel/funvip/external/trimal.v1.4/trimAl/scripts 2024-06-17T06:41:01,411 copying build/lib/funvip/external/trimal.v1.4/trimAl/scripts/set_manual_boundaries.py -> build/bdist.linux-armv7l/wheel/funvip/external/trimal.v1.4/trimAl/scripts 2024-06-17T06:41:01,414 copying build/lib/funvip/external/trimal.v1.4/trimAl/scripts/generate_trimmed_msas.sh -> build/bdist.linux-armv7l/wheel/funvip/external/trimal.v1.4/trimAl/scripts 2024-06-17T06:41:01,417 copying build/lib/funvip/external/trimal.v1.4/trimAl/scripts/selective_trimming_for_dNdS_analyses.based_neighbours.py -> build/bdist.linux-armv7l/wheel/funvip/external/trimal.v1.4/trimAl/scripts 2024-06-17T06:41:01,420 copying build/lib/funvip/external/trimal.v1.4/trimAl/scripts/get_sequence_representative_from_alignment.py -> build/bdist.linux-armv7l/wheel/funvip/external/trimal.v1.4/trimAl/scripts 2024-06-17T06:41:01,422 copying build/lib/funvip/external/trimal.v1.4/trimAl/LICENSE -> build/bdist.linux-armv7l/wheel/funvip/external/trimal.v1.4/trimAl 2024-06-17T06:41:01,425 copying build/lib/funvip/external/trimal.v1.4/trimAl/CHANGELOG -> build/bdist.linux-armv7l/wheel/funvip/external/trimal.v1.4/trimAl 2024-06-17T06:41:01,429 creating build/bdist.linux-armv7l/wheel/funvip/external/trimal.v1.4/trimAl/source 2024-06-17T06:41:01,430 copying build/lib/funvip/external/trimal.v1.4/trimAl/source/statAl.cpp -> build/bdist.linux-armv7l/wheel/funvip/external/trimal.v1.4/trimAl/source 2024-06-17T06:41:01,433 copying build/lib/funvip/external/trimal.v1.4/trimAl/source/similarityMatrix.h -> build/bdist.linux-armv7l/wheel/funvip/external/trimal.v1.4/trimAl/source 2024-06-17T06:41:01,435 copying build/lib/funvip/external/trimal.v1.4/trimAl/source/statisticsFiles.cpp -> build/bdist.linux-armv7l/wheel/funvip/external/trimal.v1.4/trimAl/source 2024-06-17T06:41:01,437 copying build/lib/funvip/external/trimal.v1.4/trimAl/source/readal.exe -> build/bdist.linux-armv7l/wheel/funvip/external/trimal.v1.4/trimAl/source 2024-06-17T06:41:01,446 copying build/lib/funvip/external/trimal.v1.4/trimAl/source/rwAlignment.o -> build/bdist.linux-armv7l/wheel/funvip/external/trimal.v1.4/trimAl/source 2024-06-17T06:41:01,450 copying build/lib/funvip/external/trimal.v1.4/trimAl/source/readAl.cpp -> build/bdist.linux-armv7l/wheel/funvip/external/trimal.v1.4/trimAl/source 2024-06-17T06:41:01,453 copying build/lib/funvip/external/trimal.v1.4/trimAl/source/sequencesMatrix.o -> build/bdist.linux-armv7l/wheel/funvip/external/trimal.v1.4/trimAl/source 2024-06-17T06:41:01,456 copying build/lib/funvip/external/trimal.v1.4/trimAl/source/statisticsFiles.h -> build/bdist.linux-armv7l/wheel/funvip/external/trimal.v1.4/trimAl/source 2024-06-17T06:41:01,457 copying build/lib/funvip/external/trimal.v1.4/trimAl/source/compareFiles.h -> build/bdist.linux-armv7l/wheel/funvip/external/trimal.v1.4/trimAl/source 2024-06-17T06:41:01,460 copying build/lib/funvip/external/trimal.v1.4/trimAl/source/similarityMatrix.o -> build/bdist.linux-armv7l/wheel/funvip/external/trimal.v1.4/trimAl/source 2024-06-17T06:41:01,462 copying build/lib/funvip/external/trimal.v1.4/trimAl/source/alignment.h -> build/bdist.linux-armv7l/wheel/funvip/external/trimal.v1.4/trimAl/source 2024-06-17T06:41:01,465 copying build/lib/funvip/external/trimal.v1.4/trimAl/source/autAlignment.o -> build/bdist.linux-armv7l/wheel/funvip/external/trimal.v1.4/trimAl/source 2024-06-17T06:41:01,468 copying build/lib/funvip/external/trimal.v1.4/trimAl/source/utils.cpp -> build/bdist.linux-armv7l/wheel/funvip/external/trimal.v1.4/trimAl/source 2024-06-17T06:41:01,472 copying build/lib/funvip/external/trimal.v1.4/trimAl/source/autAlignment.cpp -> build/bdist.linux-armv7l/wheel/funvip/external/trimal.v1.4/trimAl/source 2024-06-17T06:41:01,474 copying build/lib/funvip/external/trimal.v1.4/trimAl/source/sequencesMatrix.cpp -> build/bdist.linux-armv7l/wheel/funvip/external/trimal.v1.4/trimAl/source 2024-06-17T06:41:01,477 copying build/lib/funvip/external/trimal.v1.4/trimAl/source/main.cpp -> build/bdist.linux-armv7l/wheel/funvip/external/trimal.v1.4/trimAl/source 2024-06-17T06:41:01,481 copying build/lib/funvip/external/trimal.v1.4/trimAl/source/statisticsGaps.h -> build/bdist.linux-armv7l/wheel/funvip/external/trimal.v1.4/trimAl/source 2024-06-17T06:41:01,484 copying build/lib/funvip/external/trimal.v1.4/trimAl/source/alignment.cpp -> build/bdist.linux-armv7l/wheel/funvip/external/trimal.v1.4/trimAl/source 2024-06-17T06:41:01,489 copying build/lib/funvip/external/trimal.v1.4/trimAl/source/utils.o -> build/bdist.linux-armv7l/wheel/funvip/external/trimal.v1.4/trimAl/source 2024-06-17T06:41:01,493 copying build/lib/funvip/external/trimal.v1.4/trimAl/source/sequencesMatrix.h -> build/bdist.linux-armv7l/wheel/funvip/external/trimal.v1.4/trimAl/source 2024-06-17T06:41:01,495 copying build/lib/funvip/external/trimal.v1.4/trimAl/source/compareFiles.o -> build/bdist.linux-armv7l/wheel/funvip/external/trimal.v1.4/trimAl/source 2024-06-17T06:41:01,499 copying build/lib/funvip/external/trimal.v1.4/trimAl/source/statisticsGaps.o -> build/bdist.linux-armv7l/wheel/funvip/external/trimal.v1.4/trimAl/source 2024-06-17T06:41:01,502 copying build/lib/funvip/external/trimal.v1.4/trimAl/source/statisticsGaps.cpp -> build/bdist.linux-armv7l/wheel/funvip/external/trimal.v1.4/trimAl/source 2024-06-17T06:41:01,505 copying build/lib/funvip/external/trimal.v1.4/trimAl/source/statisticsConservation.h -> build/bdist.linux-armv7l/wheel/funvip/external/trimal.v1.4/trimAl/source 2024-06-17T06:41:01,507 copying build/lib/funvip/external/trimal.v1.4/trimAl/source/defines.h -> build/bdist.linux-armv7l/wheel/funvip/external/trimal.v1.4/trimAl/source 2024-06-17T06:41:01,510 copying build/lib/funvip/external/trimal.v1.4/trimAl/source/statisticsConservation.cpp -> build/bdist.linux-armv7l/wheel/funvip/external/trimal.v1.4/trimAl/source 2024-06-17T06:41:01,513 copying build/lib/funvip/external/trimal.v1.4/trimAl/source/statisticsConservation.o -> build/bdist.linux-armv7l/wheel/funvip/external/trimal.v1.4/trimAl/source 2024-06-17T06:41:01,516 copying build/lib/funvip/external/trimal.v1.4/trimAl/source/makefile.MacOS -> build/bdist.linux-armv7l/wheel/funvip/external/trimal.v1.4/trimAl/source 2024-06-17T06:41:01,518 copying build/lib/funvip/external/trimal.v1.4/trimAl/source/utils.h -> build/bdist.linux-armv7l/wheel/funvip/external/trimal.v1.4/trimAl/source 2024-06-17T06:41:01,521 copying build/lib/funvip/external/trimal.v1.4/trimAl/source/rwAlignment.cpp -> build/bdist.linux-armv7l/wheel/funvip/external/trimal.v1.4/trimAl/source 2024-06-17T06:41:01,525 copying build/lib/funvip/external/trimal.v1.4/trimAl/source/compareFiles.cpp -> build/bdist.linux-armv7l/wheel/funvip/external/trimal.v1.4/trimAl/source 2024-06-17T06:41:01,529 copying build/lib/funvip/external/trimal.v1.4/trimAl/source/values.h -> build/bdist.linux-armv7l/wheel/funvip/external/trimal.v1.4/trimAl/source 2024-06-17T06:41:01,531 copying build/lib/funvip/external/trimal.v1.4/trimAl/source/makefile -> build/bdist.linux-armv7l/wheel/funvip/external/trimal.v1.4/trimAl/source 2024-06-17T06:41:01,533 copying build/lib/funvip/external/trimal.v1.4/trimAl/source/similarityMatrix.cpp -> build/bdist.linux-armv7l/wheel/funvip/external/trimal.v1.4/trimAl/source 2024-06-17T06:41:01,536 copying build/lib/funvip/external/trimal.v1.4/trimAl/source/statal.exe -> build/bdist.linux-armv7l/wheel/funvip/external/trimal.v1.4/trimAl/source 2024-06-17T06:41:01,546 copying build/lib/funvip/external/trimal.v1.4/trimAl/source/alignment.o -> build/bdist.linux-armv7l/wheel/funvip/external/trimal.v1.4/trimAl/source 2024-06-17T06:41:01,552 copying build/lib/funvip/external/trimal.v1.4/trimAl/AUTHORS -> build/bdist.linux-armv7l/wheel/funvip/external/trimal.v1.4/trimAl 2024-06-17T06:41:01,555 copying build/lib/funvip/external/trimal.v1.4/trimAl/README -> build/bdist.linux-armv7l/wheel/funvip/external/trimal.v1.4/trimAl 2024-06-17T06:41:01,558 creating build/bdist.linux-armv7l/wheel/funvip/external/trimal.v1.4/trimAl/bin 2024-06-17T06:41:01,559 copying build/lib/funvip/external/trimal.v1.4/trimAl/bin/trimal.exe -> build/bdist.linux-armv7l/wheel/funvip/external/trimal.v1.4/trimAl/bin 2024-06-17T06:41:01,571 copying build/lib/funvip/external/trimal.v1.4/trimAl/bin/libgcc_s_dw2-1.dll -> build/bdist.linux-armv7l/wheel/funvip/external/trimal.v1.4/trimAl/bin 2024-06-17T06:41:01,594 copying build/lib/funvip/external/trimal.v1.4/trimAl/bin/libstdc++-6.dll -> build/bdist.linux-armv7l/wheel/funvip/external/trimal.v1.4/trimAl/bin 2024-06-17T06:41:01,632 creating build/bdist.linux-armv7l/wheel/funvip/external/FastTree_Windows 2024-06-17T06:41:01,634 copying build/lib/funvip/external/FastTree_Windows/FastTree.exe -> build/bdist.linux-armv7l/wheel/funvip/external/FastTree_Windows 2024-06-17T06:41:01,643 creating build/bdist.linux-armv7l/wheel/funvip/external/iqtree 2024-06-17T06:41:01,644 copying build/lib/funvip/external/iqtree/models.nex -> build/bdist.linux-armv7l/wheel/funvip/external/iqtree 2024-06-17T06:41:01,650 copying build/lib/funvip/external/iqtree/example.nex -> build/bdist.linux-armv7l/wheel/funvip/external/iqtree 2024-06-17T06:41:01,652 copying build/lib/funvip/external/iqtree/example.phy -> build/bdist.linux-armv7l/wheel/funvip/external/iqtree 2024-06-17T06:41:01,655 copying build/lib/funvip/external/iqtree/example.cf -> build/bdist.linux-armv7l/wheel/funvip/external/iqtree 2024-06-17T06:41:01,701 creating build/bdist.linux-armv7l/wheel/funvip/external/iqtree/bin 2024-06-17T06:41:01,702 copying build/lib/funvip/external/iqtree/bin/iqtree2.exe -> build/bdist.linux-armv7l/wheel/funvip/external/iqtree/bin 2024-06-17T06:41:01,884 copying build/lib/funvip/external/iqtree/bin/iqtree2-click.exe -> build/bdist.linux-armv7l/wheel/funvip/external/iqtree/bin 2024-06-17T06:41:02,058 copying build/lib/funvip/external/iqtree/bin/libiomp5md.dll -> build/bdist.linux-armv7l/wheel/funvip/external/iqtree/bin 2024-06-17T06:41:02,082 copying build/lib/funvip/external/__init__.py -> build/bdist.linux-armv7l/wheel/funvip/external 2024-06-17T06:41:02,083 copying build/lib/funvip/external/MAFFT_Windows.zip -> build/bdist.linux-armv7l/wheel/funvip/external 2024-06-17T06:41:02,479 creating build/bdist.linux-armv7l/wheel/funvip/external/BLAST_Windows 2024-06-17T06:41:02,480 copying build/lib/funvip/external/BLAST_Windows/Uninstall-ncbi-blast-2.12.0+.exe -> build/bdist.linux-armv7l/wheel/funvip/external/BLAST_Windows 2024-06-17T06:41:02,484 creating build/bdist.linux-armv7l/wheel/funvip/external/BLAST_Windows/bin 2024-06-17T06:41:02,484 copying build/lib/funvip/external/BLAST_Windows/bin/update_blastdb.pl -> build/bdist.linux-armv7l/wheel/funvip/external/BLAST_Windows/bin 2024-06-17T06:41:02,487 copying build/lib/funvip/external/BLAST_Windows/bin/get_species_taxids.sh -> build/bdist.linux-armv7l/wheel/funvip/external/BLAST_Windows/bin 2024-06-17T06:41:02,490 copying build/lib/funvip/external/BLAST_Windows/bin/nghttp2.dll -> build/bdist.linux-armv7l/wheel/funvip/external/BLAST_Windows/bin 2024-06-17T06:41:02,494 copying build/lib/funvip/external/BLAST_Windows/bin/makeblastdb.exe -> build/bdist.linux-armv7l/wheel/funvip/external/BLAST_Windows/bin 2024-06-17T06:41:02,684 copying build/lib/funvip/external/BLAST_Windows/bin/legacy_blast.pl -> build/bdist.linux-armv7l/wheel/funvip/external/BLAST_Windows/bin 2024-06-17T06:41:02,688 copying build/lib/funvip/external/BLAST_Windows/bin/blastn.exe -> build/bdist.linux-armv7l/wheel/funvip/external/BLAST_Windows/bin 2024-06-17T06:41:02,964 copying build/lib/funvip/external/BLAST_Windows/bin/cleanup-blastdb-volumes.py -> build/bdist.linux-armv7l/wheel/funvip/external/BLAST_Windows/bin 2024-06-17T06:41:02,967 creating build/bdist.linux-armv7l/wheel/funvip/external/BLAST_Windows/doc 2024-06-17T06:41:02,967 copying build/lib/funvip/external/BLAST_Windows/doc/README.txt -> build/bdist.linux-armv7l/wheel/funvip/external/BLAST_Windows/doc 2024-06-17T06:41:02,970 creating build/bdist.linux-armv7l/wheel/funvip/external/Gblocks_Windows_0.91b 2024-06-17T06:41:02,971 creating build/bdist.linux-armv7l/wheel/funvip/external/Gblocks_Windows_0.91b/Gblocks_0.91b 2024-06-17T06:41:02,973 creating build/bdist.linux-armv7l/wheel/funvip/external/Gblocks_Windows_0.91b/Gblocks_0.91b/more_alignments 2024-06-17T06:41:02,974 copying build/lib/funvip/external/Gblocks_Windows_0.91b/Gblocks_0.91b/more_alignments/nad5.pir -> build/bdist.linux-armv7l/wheel/funvip/external/Gblocks_Windows_0.91b/Gblocks_0.91b/more_alignments 2024-06-17T06:41:02,976 copying build/lib/funvip/external/Gblocks_Windows_0.91b/Gblocks_0.91b/more_alignments/cox2.pir -> build/bdist.linux-armv7l/wheel/funvip/external/Gblocks_Windows_0.91b/Gblocks_0.91b/more_alignments 2024-06-17T06:41:02,978 copying build/lib/funvip/external/Gblocks_Windows_0.91b/Gblocks_0.91b/more_alignments/cytb.pir -> build/bdist.linux-armv7l/wheel/funvip/external/Gblocks_Windows_0.91b/Gblocks_0.91b/more_alignments 2024-06-17T06:41:02,981 copying build/lib/funvip/external/Gblocks_Windows_0.91b/Gblocks_0.91b/more_alignments/nad3.pir -> build/bdist.linux-armv7l/wheel/funvip/external/Gblocks_Windows_0.91b/Gblocks_0.91b/more_alignments 2024-06-17T06:41:02,983 creating build/bdist.linux-armv7l/wheel/funvip/external/Gblocks_Windows_0.91b/Gblocks_0.91b/Documentation 2024-06-17T06:41:02,984 copying build/lib/funvip/external/Gblocks_Windows_0.91b/Gblocks_0.91b/Documentation/Gblocks_documentation.html -> build/bdist.linux-armv7l/wheel/funvip/external/Gblocks_Windows_0.91b/Gblocks_0.91b/Documentation 2024-06-17T06:41:02,987 copying build/lib/funvip/external/Gblocks_Windows_0.91b/Gblocks_0.91b/paths -> build/bdist.linux-armv7l/wheel/funvip/external/Gblocks_Windows_0.91b/Gblocks_0.91b 2024-06-17T06:41:02,989 copying build/lib/funvip/external/Gblocks_Windows_0.91b/Gblocks_0.91b/nad3.pir -> build/bdist.linux-armv7l/wheel/funvip/external/Gblocks_Windows_0.91b/Gblocks_0.91b 2024-06-17T06:41:02,991 copying build/lib/funvip/external/Gblocks_Windows_0.91b/Gblocks_0.91b/Gblocks.exe -> build/bdist.linux-armv7l/wheel/funvip/external/Gblocks_Windows_0.91b/Gblocks_0.91b 2024-06-17T06:41:02,997 copying build/lib/funvip/external/MAFFT_LICENSE -> build/bdist.linux-armv7l/wheel/funvip/external 2024-06-17T06:41:03,000 copying build/lib/funvip/__init__.py -> build/bdist.linux-armv7l/wheel/funvip 2024-06-17T06:41:03,002 creating build/bdist.linux-armv7l/wheel/funvip/preset 2024-06-17T06:41:03,002 copying build/lib/funvip/preset/.gitignore -> build/bdist.linux-armv7l/wheel/funvip/preset 2024-06-17T06:41:03,004 copying build/lib/funvip/preset/fast.yaml -> build/bdist.linux-armv7l/wheel/funvip/preset 2024-06-17T06:41:03,005 copying build/lib/funvip/preset/accurate.yaml -> build/bdist.linux-armv7l/wheel/funvip/preset 2024-06-17T06:41:03,007 copying build/lib/funvip/main.py -> build/bdist.linux-armv7l/wheel/funvip 2024-06-17T06:41:03,010 creating build/bdist.linux-armv7l/wheel/funvip/src 2024-06-17T06:41:03,011 copying build/lib/funvip/src/version.py -> build/bdist.linux-armv7l/wheel/funvip/src 2024-06-17T06:41:03,013 copying build/lib/funvip/src/ncbi.py -> build/bdist.linux-armv7l/wheel/funvip/src 2024-06-17T06:41:03,015 copying build/lib/funvip/src/cluster.py -> build/bdist.linux-armv7l/wheel/funvip/src 2024-06-17T06:41:03,018 copying build/lib/funvip/src/concatenate.py -> build/bdist.linux-armv7l/wheel/funvip/src 2024-06-17T06:41:03,021 copying build/lib/funvip/src/opt_generator.py -> build/bdist.linux-armv7l/wheel/funvip/src 2024-06-17T06:41:03,022 copying build/lib/funvip/src/validate_option.py -> build/bdist.linux-armv7l/wheel/funvip/src 2024-06-17T06:41:03,026 creating build/bdist.linux-armv7l/wheel/funvip/src/templates 2024-06-17T06:41:03,027 copying build/lib/funvip/src/templates/template.html -> build/bdist.linux-armv7l/wheel/funvip/src/templates 2024-06-17T06:41:03,029 copying build/lib/funvip/src/validate_input.py -> build/bdist.linux-armv7l/wheel/funvip/src 2024-06-17T06:41:03,031 copying build/lib/funvip/src/validation.py -> build/bdist.linux-armv7l/wheel/funvip/src 2024-06-17T06:41:03,033 copying build/lib/funvip/src/search.py -> build/bdist.linux-armv7l/wheel/funvip/src 2024-06-17T06:41:03,035 copying build/lib/funvip/src/trim.py -> build/bdist.linux-armv7l/wheel/funvip/src 2024-06-17T06:41:03,038 copying build/lib/funvip/src/tool.py -> build/bdist.linux-armv7l/wheel/funvip/src 2024-06-17T06:41:03,040 copying build/lib/funvip/src/reporter.py -> build/bdist.linux-armv7l/wheel/funvip/src 2024-06-17T06:41:03,043 copying build/lib/funvip/src/logger.py -> build/bdist.linux-armv7l/wheel/funvip/src 2024-06-17T06:41:03,045 copying build/lib/funvip/src/__init__.py -> build/bdist.linux-armv7l/wheel/funvip/src 2024-06-17T06:41:03,046 copying build/lib/funvip/src/dataset.py -> build/bdist.linux-armv7l/wheel/funvip/src 2024-06-17T06:41:03,049 copying build/lib/funvip/src/command.py -> build/bdist.linux-armv7l/wheel/funvip/src 2024-06-17T06:41:03,051 copying build/lib/funvip/src/.gitignore -> build/bdist.linux-armv7l/wheel/funvip/src 2024-06-17T06:41:03,053 copying build/lib/funvip/src/logics.py -> build/bdist.linux-armv7l/wheel/funvip/src 2024-06-17T06:41:03,055 copying build/lib/funvip/src/hasher.py -> build/bdist.linux-armv7l/wheel/funvip/src 2024-06-17T06:41:03,056 copying build/lib/funvip/src/save.py -> build/bdist.linux-armv7l/wheel/funvip/src 2024-06-17T06:41:03,059 copying build/lib/funvip/src/modeltest.py -> build/bdist.linux-armv7l/wheel/funvip/src 2024-06-17T06:41:03,061 copying build/lib/funvip/src/tree.py -> build/bdist.linux-armv7l/wheel/funvip/src 2024-06-17T06:41:03,064 copying build/lib/funvip/src/tree_interpretation.py -> build/bdist.linux-armv7l/wheel/funvip/src 2024-06-17T06:41:03,067 copying build/lib/funvip/src/align.py -> build/bdist.linux-armv7l/wheel/funvip/src 2024-06-17T06:41:03,069 copying build/lib/funvip/src/initialize.py -> build/bdist.linux-armv7l/wheel/funvip/src 2024-06-17T06:41:03,071 copying build/lib/funvip/src/tree_interpretation_pipe.py -> build/bdist.linux-armv7l/wheel/funvip/src 2024-06-17T06:41:03,073 copying build/lib/funvip/src/ext.py -> build/bdist.linux-armv7l/wheel/funvip/src 2024-06-17T06:41:03,076 creating build/bdist.linux-armv7l/wheel/funvip/src/__pycache__ 2024-06-17T06:41:03,077 copying build/lib/funvip/src/__pycache__/io.cpython-310.pyc -> build/bdist.linux-armv7l/wheel/funvip/src/__pycache__ 2024-06-17T06:41:03,080 copying build/lib/funvip/src/__pycache__/visualize.cpython-39.pyc -> build/bdist.linux-armv7l/wheel/funvip/src/__pycache__ 2024-06-17T06:41:03,082 copying build/lib/funvip/src/__pycache__/align.cpython-310.pyc -> build/bdist.linux-armv7l/wheel/funvip/src/__pycache__ 2024-06-17T06:41:03,083 copying build/lib/funvip/src/__pycache__/CAT_V_pipe.cpython-39.pyc -> build/bdist.linux-armv7l/wheel/funvip/src/__pycache__ 2024-06-17T06:41:03,085 copying build/lib/funvip/src/__pycache__/multigene.cpython-39.pyc -> build/bdist.linux-armv7l/wheel/funvip/src/__pycache__ 2024-06-17T06:41:03,087 copying build/lib/funvip/src/__pycache__/initialize.cpython-39.pyc -> build/bdist.linux-armv7l/wheel/funvip/src/__pycache__ 2024-06-17T06:41:03,089 copying build/lib/funvip/src/__pycache__/search.cpython-39.pyc -> build/bdist.linux-armv7l/wheel/funvip/src/__pycache__ 2024-06-17T06:41:03,091 copying build/lib/funvip/src/__pycache__/tool.cpython-39.pyc -> build/bdist.linux-armv7l/wheel/funvip/src/__pycache__ 2024-06-17T06:41:03,093 copying build/lib/funvip/src/__pycache__/reporter.cpython-39.pyc -> build/bdist.linux-armv7l/wheel/funvip/src/__pycache__ 2024-06-17T06:41:03,096 copying build/lib/funvip/src/__pycache__/dataset.cpython-39.pyc -> build/bdist.linux-armv7l/wheel/funvip/src/__pycache__ 2024-06-17T06:41:03,098 copying build/lib/funvip/src/__pycache__/ncbi.cpython-39.pyc -> build/bdist.linux-armv7l/wheel/funvip/src/__pycache__ 2024-06-17T06:41:03,099 copying build/lib/funvip/src/__pycache__/validation.cpython-39.pyc -> build/bdist.linux-armv7l/wheel/funvip/src/__pycache__ 2024-06-17T06:41:03,101 copying build/lib/funvip/src/__pycache__/__init__.cpython-39.pyc -> build/bdist.linux-armv7l/wheel/funvip/src/__pycache__ 2024-06-17T06:41:03,103 copying build/lib/funvip/src/__pycache__/CAT_V.cpython-39.pyc -> build/bdist.linux-armv7l/wheel/funvip/src/__pycache__ 2024-06-17T06:41:03,105 copying build/lib/funvip/src/__pycache__/ext.cpython-39.pyc -> build/bdist.linux-armv7l/wheel/funvip/src/__pycache__ 2024-06-17T06:41:03,107 copying build/lib/funvip/src/__pycache__/cluster.cpython-39.pyc -> build/bdist.linux-armv7l/wheel/funvip/src/__pycache__ 2024-06-17T06:41:03,110 copying build/lib/funvip/src/__pycache__/logger.cpython-39.pyc -> build/bdist.linux-armv7l/wheel/funvip/src/__pycache__ 2024-06-17T06:41:03,111 copying build/lib/funvip/src/__pycache__/ext.cpython-310.pyc -> build/bdist.linux-armv7l/wheel/funvip/src/__pycache__ 2024-06-17T06:41:03,113 copying build/lib/funvip/src/__pycache__/opt_generator.cpython-39.pyc -> build/bdist.linux-armv7l/wheel/funvip/src/__pycache__ 2024-06-17T06:41:03,115 copying build/lib/funvip/src/__pycache__/modeltest.cpython-39.pyc -> build/bdist.linux-armv7l/wheel/funvip/src/__pycache__ 2024-06-17T06:41:03,117 copying build/lib/funvip/src/__pycache__/CAT_V.cpython-310.pyc -> build/bdist.linux-armv7l/wheel/funvip/src/__pycache__ 2024-06-17T06:41:03,120 copying build/lib/funvip/src/__pycache__/hasher.cpython-39.pyc -> build/bdist.linux-armv7l/wheel/funvip/src/__pycache__ 2024-06-17T06:41:03,122 copying build/lib/funvip/src/__pycache__/io.cpython-39.pyc -> build/bdist.linux-armv7l/wheel/funvip/src/__pycache__ 2024-06-17T06:41:03,124 copying build/lib/funvip/src/__pycache__/__init__.cpython-310.pyc -> build/bdist.linux-armv7l/wheel/funvip/src/__pycache__ 2024-06-17T06:41:03,126 copying build/lib/funvip/src/__pycache__/CATV_pipe.cpython-310.pyc -> build/bdist.linux-armv7l/wheel/funvip/src/__pycache__ 2024-06-17T06:41:03,128 creating build/bdist.linux-armv7l/wheel/funvip/test_dataset 2024-06-17T06:41:03,130 creating build/bdist.linux-armv7l/wheel/funvip/test_dataset/penicillium 2024-06-17T06:41:03,131 creating build/bdist.linux-armv7l/wheel/funvip/test_dataset/penicillium/Query 2024-06-17T06:41:03,132 copying build/lib/funvip/test_dataset/penicillium/Query/Query.xlsx -> build/bdist.linux-armv7l/wheel/funvip/test_dataset/penicillium/Query 2024-06-17T06:41:03,135 copying build/lib/funvip/test_dataset/penicillium/preset.yaml -> build/bdist.linux-armv7l/wheel/funvip/test_dataset/penicillium 2024-06-17T06:41:03,137 copying build/lib/funvip/test_dataset/penicillium/Options.config -> build/bdist.linux-armv7l/wheel/funvip/test_dataset/penicillium 2024-06-17T06:41:03,139 creating build/bdist.linux-armv7l/wheel/funvip/test_dataset/penicillium/DB 2024-06-17T06:41:03,140 copying build/lib/funvip/test_dataset/penicillium/DB/DB_Penicillium.xlsx -> build/bdist.linux-armv7l/wheel/funvip/test_dataset/penicillium/DB 2024-06-17T06:41:03,148 creating build/bdist.linux-armv7l/wheel/funvip/test_dataset/terrei 2024-06-17T06:41:03,149 creating build/bdist.linux-armv7l/wheel/funvip/test_dataset/terrei/Query 2024-06-17T06:41:03,150 copying build/lib/funvip/test_dataset/terrei/Query/FunVIP_Aspergillus_query.xlsx -> build/bdist.linux-armv7l/wheel/funvip/test_dataset/terrei/Query 2024-06-17T06:41:03,153 copying build/lib/funvip/test_dataset/terrei/preset.yaml -> build/bdist.linux-armv7l/wheel/funvip/test_dataset/terrei 2024-06-17T06:41:03,155 creating build/bdist.linux-armv7l/wheel/funvip/test_dataset/terrei/DB 2024-06-17T06:41:03,156 copying build/lib/funvip/test_dataset/terrei/DB/FunVIP_Aspergillus_db.xlsx -> build/bdist.linux-armv7l/wheel/funvip/test_dataset/terrei/DB 2024-06-17T06:41:03,159 running install_egg_info 2024-06-17T06:41:03,163 Copying FunVIP.egg-info to build/bdist.linux-armv7l/wheel/FunVIP-0.3.23.1-py3.11.egg-info 2024-06-17T06:41:03,174 running install_scripts 2024-06-17T06:41:03,193 creating build/bdist.linux-armv7l/wheel/FunVIP-0.3.23.1.dist-info/WHEEL 2024-06-17T06:41:03,196 creating '/tmp/pip-wheel-i4shxpst/.tmp-6jluqr_d/FunVIP-0.3.23.1-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2024-06-17T06:41:03,200 adding 'funvip/FunVIP_GUI.py' 2024-06-17T06:41:03,202 adding 'funvip/__init__.py' 2024-06-17T06:41:03,204 adding 'funvip/main.py' 2024-06-17T06:41:03,208 adding 'funvip/data/Option_manager.xlsx' 2024-06-17T06:41:03,209 adding 'funvip/data/__init__.py' 2024-06-17T06:41:03,217 adding 'funvip/data/genus_line.txt' 2024-06-17T06:41:03,224 adding 'funvip/external/MAFFT_LICENSE' 2024-06-17T06:41:06,258 adding 'funvip/external/MAFFT_Windows.zip' 2024-06-17T06:41:06,427 adding 'funvip/external/__init__.py' 2024-06-17T06:41:06,436 adding 'funvip/external/BLAST_Windows/Uninstall-ncbi-blast-2.12.0+.exe' 2024-06-17T06:41:09,902 adding 'funvip/external/BLAST_Windows/bin/blastn.exe' 2024-06-17T06:41:10,021 adding 'funvip/external/BLAST_Windows/bin/cleanup-blastdb-volumes.py' 2024-06-17T06:41:10,022 adding 'funvip/external/BLAST_Windows/bin/get_species_taxids.sh' 2024-06-17T06:41:10,027 adding 'funvip/external/BLAST_Windows/bin/legacy_blast.pl' 2024-06-17T06:41:12,601 adding 'funvip/external/BLAST_Windows/bin/makeblastdb.exe' 2024-06-17T06:41:12,715 adding 'funvip/external/BLAST_Windows/bin/nghttp2.dll' 2024-06-17T06:41:12,721 adding 'funvip/external/BLAST_Windows/bin/update_blastdb.pl' 2024-06-17T06:41:12,723 adding 'funvip/external/BLAST_Windows/doc/README.txt' 2024-06-17T06:41:12,779 adding 'funvip/external/FastTree_Windows/FastTree.exe' 2024-06-17T06:41:12,821 adding 'funvip/external/Gblocks_Windows_0.91b/Gblocks_0.91b/Gblocks.exe' 2024-06-17T06:41:12,824 adding 'funvip/external/Gblocks_Windows_0.91b/Gblocks_0.91b/nad3.pir' 2024-06-17T06:41:12,825 adding 'funvip/external/Gblocks_Windows_0.91b/Gblocks_0.91b/paths' 2024-06-17T06:41:12,830 adding 'funvip/external/Gblocks_Windows_0.91b/Gblocks_0.91b/Documentation/Gblocks_documentation.html' 2024-06-17T06:41:12,833 adding 'funvip/external/Gblocks_Windows_0.91b/Gblocks_0.91b/more_alignments/cox2.pir' 2024-06-17T06:41:12,836 adding 'funvip/external/Gblocks_Windows_0.91b/Gblocks_0.91b/more_alignments/cytb.pir' 2024-06-17T06:41:12,837 adding 'funvip/external/Gblocks_Windows_0.91b/Gblocks_0.91b/more_alignments/nad3.pir' 2024-06-17T06:41:12,840 adding 'funvip/external/Gblocks_Windows_0.91b/Gblocks_0.91b/more_alignments/nad5.pir' 2024-06-17T06:41:12,846 adding 'funvip/external/RAxML_Windows/GPL-3.0.txt' 2024-06-17T06:41:12,848 adding 'funvip/external/RAxML_Windows/README' 2024-06-17T06:41:13,140 adding 'funvip/external/RAxML_Windows/raxmlHPC-PTHREADS-AVX2.exe' 2024-06-17T06:41:13,232 adding 'funvip/external/iqtree/example.cf' 2024-06-17T06:41:13,247 adding 'funvip/external/iqtree/example.nex' 2024-06-17T06:41:13,260 adding 'funvip/external/iqtree/example.phy' 2024-06-17T06:41:13,289 adding 'funvip/external/iqtree/models.nex' 2024-06-17T06:41:15,377 adding 'funvip/external/iqtree/bin/iqtree2-click.exe' 2024-06-17T06:41:17,535 adding 'funvip/external/iqtree/bin/iqtree2.exe' 2024-06-17T06:41:17,797 adding 'funvip/external/iqtree/bin/libiomp5md.dll' 2024-06-17T06:41:17,927 adding 'funvip/external/mmseqs_Windows/LICENSE.md' 2024-06-17T06:41:17,929 adding 'funvip/external/mmseqs_Windows/README.md' 2024-06-17T06:41:17,931 adding 'funvip/external/mmseqs_Windows/mmseqs.bat' 2024-06-17T06:41:18,062 adding 'funvip/external/mmseqs_Windows/bin/busybox.exe' 2024-06-17T06:41:18,076 adding 'funvip/external/mmseqs_Windows/bin/cygbz2-1.dll' 2024-06-17T06:41:18,090 adding 'funvip/external/mmseqs_Windows/bin/cyggcc_s-seh-1.dll' 2024-06-17T06:41:18,132 adding 'funvip/external/mmseqs_Windows/bin/cyggomp-1.dll' 2024-06-17T06:41:18,394 adding 'funvip/external/mmseqs_Windows/bin/cygstdc++-6.dll' 2024-06-17T06:41:18,996 adding 'funvip/external/mmseqs_Windows/bin/cygwin1.dll' 2024-06-17T06:41:19,033 adding 'funvip/external/mmseqs_Windows/bin/cygz.dll' 2024-06-17T06:41:22,386 adding 'funvip/external/mmseqs_Windows/bin/mmseqs.exe' 2024-06-17T06:41:22,509 adding 'funvip/external/mmseqs_Windows/examples/QUERY.fasta' 2024-06-17T06:41:22,513 adding 'funvip/external/mmseqs_Windows/matrices/PAM10.out' 2024-06-17T06:41:22,515 adding 'funvip/external/mmseqs_Windows/matrices/PAM100.out' 2024-06-17T06:41:22,516 adding 'funvip/external/mmseqs_Windows/matrices/PAM110.out' 2024-06-17T06:41:22,518 adding 'funvip/external/mmseqs_Windows/matrices/PAM120.out' 2024-06-17T06:41:22,519 adding 'funvip/external/mmseqs_Windows/matrices/PAM130.out' 2024-06-17T06:41:22,521 adding 'funvip/external/mmseqs_Windows/matrices/PAM140.out' 2024-06-17T06:41:22,522 adding 'funvip/external/mmseqs_Windows/matrices/PAM150.out' 2024-06-17T06:41:22,523 adding 'funvip/external/mmseqs_Windows/matrices/PAM160.out' 2024-06-17T06:41:22,525 adding 'funvip/external/mmseqs_Windows/matrices/PAM170.out' 2024-06-17T06:41:22,526 adding 'funvip/external/mmseqs_Windows/matrices/PAM180.out' 2024-06-17T06:41:22,527 adding 'funvip/external/mmseqs_Windows/matrices/PAM190.out' 2024-06-17T06:41:22,529 adding 'funvip/external/mmseqs_Windows/matrices/PAM20.out' 2024-06-17T06:41:22,530 adding 'funvip/external/mmseqs_Windows/matrices/PAM30.out' 2024-06-17T06:41:22,532 adding 'funvip/external/mmseqs_Windows/matrices/PAM40.out' 2024-06-17T06:41:22,533 adding 'funvip/external/mmseqs_Windows/matrices/PAM50.out' 2024-06-17T06:41:22,534 adding 'funvip/external/mmseqs_Windows/matrices/PAM60.out' 2024-06-17T06:41:22,536 adding 'funvip/external/mmseqs_Windows/matrices/PAM70.out' 2024-06-17T06:41:22,537 adding 'funvip/external/mmseqs_Windows/matrices/PAM80.out' 2024-06-17T06:41:22,538 adding 'funvip/external/mmseqs_Windows/matrices/PAM90.out' 2024-06-17T06:41:22,540 adding 'funvip/external/mmseqs_Windows/matrices/VTML10.out' 2024-06-17T06:41:22,541 adding 'funvip/external/mmseqs_Windows/matrices/VTML120.out' 2024-06-17T06:41:22,543 adding 'funvip/external/mmseqs_Windows/matrices/VTML160.out' 2024-06-17T06:41:22,545 adding 'funvip/external/mmseqs_Windows/matrices/VTML20.out' 2024-06-17T06:41:22,546 adding 'funvip/external/mmseqs_Windows/matrices/VTML40.out' 2024-06-17T06:41:22,547 adding 'funvip/external/mmseqs_Windows/matrices/VTML80.out' 2024-06-17T06:41:22,549 adding 'funvip/external/mmseqs_Windows/matrices/blosum100.out' 2024-06-17T06:41:22,550 adding 'funvip/external/mmseqs_Windows/matrices/blosum30.out' 2024-06-17T06:41:22,552 adding 'funvip/external/mmseqs_Windows/matrices/blosum35.out' 2024-06-17T06:41:22,553 adding 'funvip/external/mmseqs_Windows/matrices/blosum40.out' 2024-06-17T06:41:22,555 adding 'funvip/external/mmseqs_Windows/matrices/blosum45.out' 2024-06-17T06:41:22,557 adding 'funvip/external/mmseqs_Windows/matrices/blosum50.out' 2024-06-17T06:41:22,558 adding 'funvip/external/mmseqs_Windows/matrices/blosum55.out' 2024-06-17T06:41:22,560 adding 'funvip/external/mmseqs_Windows/matrices/blosum60.out' 2024-06-17T06:41:22,561 adding 'funvip/external/mmseqs_Windows/matrices/blosum62.out' 2024-06-17T06:41:22,563 adding 'funvip/external/mmseqs_Windows/matrices/blosum65.out' 2024-06-17T06:41:22,564 adding 'funvip/external/mmseqs_Windows/matrices/blosum70.out' 2024-06-17T06:41:22,566 adding 'funvip/external/mmseqs_Windows/matrices/blosum75.out' 2024-06-17T06:41:22,567 adding 'funvip/external/mmseqs_Windows/matrices/blosum80.out' 2024-06-17T06:41:22,569 adding 'funvip/external/mmseqs_Windows/matrices/blosum85.out' 2024-06-17T06:41:22,570 adding 'funvip/external/mmseqs_Windows/matrices/blosum90.out' 2024-06-17T06:41:22,572 adding 'funvip/external/mmseqs_Windows/matrices/blosum95.out' 2024-06-17T06:41:22,573 adding 'funvip/external/mmseqs_Windows/matrices/nucleotide.out' 2024-06-17T06:41:22,575 adding 'funvip/external/mmseqs_Windows/util/bash-completion.sh' 2024-06-17T06:41:22,577 adding 'funvip/external/trimal.v1.4/trimAl/AUTHORS' 2024-06-17T06:41:22,578 adding 'funvip/external/trimal.v1.4/trimAl/CHANGELOG' 2024-06-17T06:41:22,585 adding 'funvip/external/trimal.v1.4/trimAl/LICENSE' 2024-06-17T06:41:22,586 adding 'funvip/external/trimal.v1.4/trimAl/README' 2024-06-17T06:41:22,694 adding 'funvip/external/trimal.v1.4/trimAl/bin/libgcc_s_dw2-1.dll' 2024-06-17T06:41:22,877 adding 'funvip/external/trimal.v1.4/trimAl/bin/libstdc++-6.dll' 2024-06-17T06:41:22,975 adding 'funvip/external/trimal.v1.4/trimAl/bin/trimal.exe' 2024-06-17T06:41:23,330 adding 'funvip/external/trimal.v1.4/trimAl/scripts/check_codon_alignments.py' 2024-06-17T06:41:23,334 adding 'funvip/external/trimal.v1.4/trimAl/scripts/compare_trimmed_msas.sh' 2024-06-17T06:41:23,336 adding 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funvip (pyproject.toml): finished with status 'done' 2024-06-17T06:41:47,404 Created wheel for funvip: filename=FunVIP-0.3.23.1-py3-none-any.whl size=59748968 sha256=f69e1c7bc13cc0f43effc7502586a00813341329ecb72958ea4aee5b5b9c7a03 2024-06-17T06:41:47,405 Stored in directory: /tmp/pip-ephem-wheel-cache-nwtma8s7/wheels/be/1c/80/a419c63abdbb98b72513a0bb50bc0bdfda9e40446801b29dc4 2024-06-17T06:41:47,442 Successfully built funvip 2024-06-17T06:41:48,828 Removed build tracker: '/tmp/pip-build-tracker-lofvvmmr'