2024-06-17T15:32:37,714 Created temporary directory: /tmp/pip-build-tracker-pgv8rzc_ 2024-06-17T15:32:37,716 Initialized build tracking at /tmp/pip-build-tracker-pgv8rzc_ 2024-06-17T15:32:37,716 Created build tracker: /tmp/pip-build-tracker-pgv8rzc_ 2024-06-17T15:32:37,716 Entered build tracker: /tmp/pip-build-tracker-pgv8rzc_ 2024-06-17T15:32:37,717 Created temporary directory: /tmp/pip-wheel-b4jad8zr 2024-06-17T15:32:37,720 Created temporary directory: /tmp/pip-ephem-wheel-cache-43jz18z0 2024-06-17T15:32:37,742 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2024-06-17T15:32:37,746 2 location(s) to search for versions of nnunetv2-bm-custom: 2024-06-17T15:32:37,746 * https://pypi.org/simple/nnunetv2-bm-custom/ 2024-06-17T15:32:37,746 * https://www.piwheels.org/simple/nnunetv2-bm-custom/ 2024-06-17T15:32:37,747 Fetching project page and analyzing links: https://pypi.org/simple/nnunetv2-bm-custom/ 2024-06-17T15:32:37,747 Getting page https://pypi.org/simple/nnunetv2-bm-custom/ 2024-06-17T15:32:37,749 Found index url https://pypi.org/simple/ 2024-06-17T15:32:37,967 Fetched page https://pypi.org/simple/nnunetv2-bm-custom/ as application/vnd.pypi.simple.v1+json 2024-06-17T15:32:37,969 Skipping link: No binaries permitted for nnunetv2-bm-custom: https://files.pythonhosted.org/packages/d2/cb/f809cd3fa316db370dd94a85f2f465cd8fad099a59d30697b5056b1a88f5/nnunetv2_bm_custom-2.5-py3-none-any.whl (from https://pypi.org/simple/nnunetv2-bm-custom/) (requires-python:>=3.9) 2024-06-17T15:32:37,970 Found link https://files.pythonhosted.org/packages/8b/f0/2c495096ef8c0545849af606524bc9403a7e12d3e4f4ea5a9690bde89f5a/nnunetv2_bm_custom-2.5.tar.gz (from https://pypi.org/simple/nnunetv2-bm-custom/) (requires-python:>=3.9), version: 2.5 2024-06-17T15:32:37,971 Fetching project page and analyzing links: https://www.piwheels.org/simple/nnunetv2-bm-custom/ 2024-06-17T15:32:37,971 Getting page https://www.piwheels.org/simple/nnunetv2-bm-custom/ 2024-06-17T15:32:37,972 Found index url https://www.piwheels.org/simple/ 2024-06-17T15:32:38,133 Fetched page https://www.piwheels.org/simple/nnunetv2-bm-custom/ as text/html 2024-06-17T15:32:38,134 Skipping link: not a file: https://www.piwheels.org/simple/nnunetv2-bm-custom/ 2024-06-17T15:32:38,135 Skipping link: not a file: https://pypi.org/simple/nnunetv2-bm-custom/ 2024-06-17T15:32:38,153 Given no hashes to check 1 links for project 'nnunetv2-bm-custom': discarding no candidates 2024-06-17T15:32:38,170 Collecting nnunetv2-bm-custom==2.5 2024-06-17T15:32:38,173 Created temporary directory: /tmp/pip-unpack-l4v451yp 2024-06-17T15:32:38,392 Downloading nnunetv2_bm_custom-2.5.tar.gz (185 kB) 2024-06-17T15:32:38,823 Added nnunetv2-bm-custom==2.5 from https://files.pythonhosted.org/packages/8b/f0/2c495096ef8c0545849af606524bc9403a7e12d3e4f4ea5a9690bde89f5a/nnunetv2_bm_custom-2.5.tar.gz to build tracker '/tmp/pip-build-tracker-pgv8rzc_' 2024-06-17T15:32:38,829 Created temporary directory: /tmp/pip-build-env-so35waf4 2024-06-17T15:32:38,833 Installing build dependencies: started 2024-06-17T15:32:38,835 Running command pip subprocess to install build dependencies 2024-06-17T15:32:39,978 Using pip 24.0 from /usr/local/lib/python3.11/dist-packages/pip (python 3.11) 2024-06-17T15:32:40,528 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2024-06-17T15:32:42,077 Collecting setuptools>=67.8.0 2024-06-17T15:32:42,087 Downloading https://www.piwheels.org/simple/setuptools/setuptools-70.0.0-py3-none-any.whl (863 kB) 2024-06-17T15:32:42,260 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 863.4/863.4 kB 5.2 MB/s eta 0:00:00 2024-06-17T15:32:44,895 Installing collected packages: setuptools 2024-06-17T15:32:47,306 Successfully installed setuptools-70.0.0 2024-06-17T15:32:47,873 Installing build dependencies: finished with status 'done' 2024-06-17T15:32:47,877 Getting requirements to build wheel: started 2024-06-17T15:32:47,878 Running command Getting requirements to build wheel 2024-06-17T15:32:48,684 running egg_info 2024-06-17T15:32:48,688 writing nnunetv2_bm_custom.egg-info/PKG-INFO 2024-06-17T15:32:48,693 writing dependency_links to nnunetv2_bm_custom.egg-info/dependency_links.txt 2024-06-17T15:32:48,696 writing entry points to nnunetv2_bm_custom.egg-info/entry_points.txt 2024-06-17T15:32:48,699 writing requirements to nnunetv2_bm_custom.egg-info/requires.txt 2024-06-17T15:32:48,700 writing top-level names to nnunetv2_bm_custom.egg-info/top_level.txt 2024-06-17T15:32:48,758 reading manifest file 'nnunetv2_bm_custom.egg-info/SOURCES.txt' 2024-06-17T15:32:48,764 adding license file 'LICENSE' 2024-06-17T15:32:48,773 writing manifest file 'nnunetv2_bm_custom.egg-info/SOURCES.txt' 2024-06-17T15:32:48,892 Getting requirements to build wheel: finished with status 'done' 2024-06-17T15:32:48,899 Installing backend dependencies: started 2024-06-17T15:32:48,900 Running command pip subprocess to install backend dependencies 2024-06-17T15:32:50,029 Using pip 24.0 from /usr/local/lib/python3.11/dist-packages/pip (python 3.11) 2024-06-17T15:32:51,066 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2024-06-17T15:32:51,619 Collecting wheel 2024-06-17T15:32:51,628 Downloading https://www.piwheels.org/simple/wheel/wheel-0.43.0-py3-none-any.whl (65 kB) 2024-06-17T15:32:51,648 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 65.8/65.8 kB 4.9 MB/s eta 0:00:00 2024-06-17T15:32:53,957 Installing collected packages: wheel 2024-06-17T15:32:54,180 Creating /tmp/pip-build-env-so35waf4/normal/local/bin 2024-06-17T15:32:54,182 changing mode of /tmp/pip-build-env-so35waf4/normal/local/bin/wheel to 755 2024-06-17T15:32:54,193 Successfully installed wheel-0.43.0 2024-06-17T15:32:54,721 Installing backend dependencies: finished with status 'done' 2024-06-17T15:32:54,723 Created temporary directory: /tmp/pip-modern-metadata-_q4ane_z 2024-06-17T15:32:54,725 Preparing metadata (pyproject.toml): started 2024-06-17T15:32:54,726 Running command Preparing metadata (pyproject.toml) 2024-06-17T15:32:55,539 running dist_info 2024-06-17T15:32:55,544 creating /tmp/pip-modern-metadata-_q4ane_z/nnunetv2_bm_custom.egg-info 2024-06-17T15:32:55,547 writing /tmp/pip-modern-metadata-_q4ane_z/nnunetv2_bm_custom.egg-info/PKG-INFO 2024-06-17T15:32:55,552 writing dependency_links to /tmp/pip-modern-metadata-_q4ane_z/nnunetv2_bm_custom.egg-info/dependency_links.txt 2024-06-17T15:32:55,555 writing entry points to /tmp/pip-modern-metadata-_q4ane_z/nnunetv2_bm_custom.egg-info/entry_points.txt 2024-06-17T15:32:55,558 writing requirements to /tmp/pip-modern-metadata-_q4ane_z/nnunetv2_bm_custom.egg-info/requires.txt 2024-06-17T15:32:55,559 writing top-level names to /tmp/pip-modern-metadata-_q4ane_z/nnunetv2_bm_custom.egg-info/top_level.txt 2024-06-17T15:32:55,560 writing manifest file '/tmp/pip-modern-metadata-_q4ane_z/nnunetv2_bm_custom.egg-info/SOURCES.txt' 2024-06-17T15:32:55,630 reading manifest file '/tmp/pip-modern-metadata-_q4ane_z/nnunetv2_bm_custom.egg-info/SOURCES.txt' 2024-06-17T15:32:55,632 adding license file 'LICENSE' 2024-06-17T15:32:55,639 writing manifest file '/tmp/pip-modern-metadata-_q4ane_z/nnunetv2_bm_custom.egg-info/SOURCES.txt' 2024-06-17T15:32:55,641 creating '/tmp/pip-modern-metadata-_q4ane_z/nnunetv2_bm_custom-2.5.dist-info' 2024-06-17T15:32:55,804 Preparing metadata (pyproject.toml): finished with status 'done' 2024-06-17T15:32:55,812 Source in /tmp/pip-wheel-b4jad8zr/nnunetv2-bm-custom_3c48e4df6a4c4f7f86712d743b904c29 has version 2.5, which satisfies requirement nnunetv2-bm-custom==2.5 from https://files.pythonhosted.org/packages/8b/f0/2c495096ef8c0545849af606524bc9403a7e12d3e4f4ea5a9690bde89f5a/nnunetv2_bm_custom-2.5.tar.gz 2024-06-17T15:32:55,813 Removed nnunetv2-bm-custom==2.5 from https://files.pythonhosted.org/packages/8b/f0/2c495096ef8c0545849af606524bc9403a7e12d3e4f4ea5a9690bde89f5a/nnunetv2_bm_custom-2.5.tar.gz from build tracker '/tmp/pip-build-tracker-pgv8rzc_' 2024-06-17T15:32:55,823 Created temporary directory: /tmp/pip-unpack-2dc5iyk9 2024-06-17T15:32:55,824 Created temporary directory: /tmp/pip-unpack-hl1dnxwe 2024-06-17T15:32:55,867 Building wheels for collected packages: nnunetv2-bm-custom 2024-06-17T15:32:55,872 Created temporary directory: /tmp/pip-wheel-iylrjis8 2024-06-17T15:32:55,872 Destination directory: /tmp/pip-wheel-iylrjis8 2024-06-17T15:32:55,875 Building wheel for nnunetv2-bm-custom (pyproject.toml): started 2024-06-17T15:32:55,876 Running command Building wheel for nnunetv2-bm-custom (pyproject.toml) 2024-06-17T15:32:56,683 running bdist_wheel 2024-06-17T15:32:56,698 running build 2024-06-17T15:32:56,699 running build_py 2024-06-17T15:32:56,703 creating build 2024-06-17T15:32:56,704 creating build/lib 2024-06-17T15:32:56,704 creating build/lib/nnunetv2 2024-06-17T15:32:56,706 copying nnunetv2/configuration.py -> build/lib/nnunetv2 2024-06-17T15:32:56,707 copying nnunetv2/__init__.py -> build/lib/nnunetv2 2024-06-17T15:32:56,709 copying nnunetv2/paths.py -> build/lib/nnunetv2 2024-06-17T15:32:56,711 creating build/lib/documentation 2024-06-17T15:32:56,712 copying documentation/__init__.py -> build/lib/documentation 2024-06-17T15:32:56,714 creating build/lib/nnunetv2/postprocessing 2024-06-17T15:32:56,715 copying nnunetv2/postprocessing/__init__.py -> build/lib/nnunetv2/postprocessing 2024-06-17T15:32:56,716 copying nnunetv2/postprocessing/remove_connected_components.py -> build/lib/nnunetv2/postprocessing 2024-06-17T15:32:56,719 creating build/lib/nnunetv2/evaluation 2024-06-17T15:32:56,720 copying nnunetv2/evaluation/accumulate_cv_results.py -> build/lib/nnunetv2/evaluation 2024-06-17T15:32:56,722 copying nnunetv2/evaluation/evaluate_predictions.py -> build/lib/nnunetv2/evaluation 2024-06-17T15:32:56,724 copying nnunetv2/evaluation/__init__.py -> build/lib/nnunetv2/evaluation 2024-06-17T15:32:56,726 copying nnunetv2/evaluation/find_best_configuration.py -> build/lib/nnunetv2/evaluation 2024-06-17T15:32:56,728 creating build/lib/nnunetv2/experiment_planning 2024-06-17T15:32:56,729 copying nnunetv2/experiment_planning/verify_dataset_integrity.py -> build/lib/nnunetv2/experiment_planning 2024-06-17T15:32:56,732 copying nnunetv2/experiment_planning/__init__.py -> build/lib/nnunetv2/experiment_planning 2024-06-17T15:32:56,733 copying nnunetv2/experiment_planning/plan_and_preprocess_entrypoints.py -> build/lib/nnunetv2/experiment_planning 2024-06-17T15:32:56,735 copying nnunetv2/experiment_planning/plan_and_preprocess_api.py -> build/lib/nnunetv2/experiment_planning 2024-06-17T15:32:56,738 creating build/lib/nnunetv2/imageio 2024-06-17T15:32:56,739 copying nnunetv2/imageio/natural_image_reader_writer.py -> build/lib/nnunetv2/imageio 2024-06-17T15:32:56,741 copying nnunetv2/imageio/__init__.py -> build/lib/nnunetv2/imageio 2024-06-17T15:32:56,742 copying nnunetv2/imageio/reader_writer_registry.py -> build/lib/nnunetv2/imageio 2024-06-17T15:32:56,744 copying nnunetv2/imageio/base_reader_writer.py -> build/lib/nnunetv2/imageio 2024-06-17T15:32:56,746 copying nnunetv2/imageio/nibabel_reader_writer.py -> build/lib/nnunetv2/imageio 2024-06-17T15:32:56,748 copying nnunetv2/imageio/tif_reader_writer.py -> build/lib/nnunetv2/imageio 2024-06-17T15:32:56,750 copying nnunetv2/imageio/simpleitk_reader_writer.py -> build/lib/nnunetv2/imageio 2024-06-17T15:32:56,753 creating build/lib/nnunetv2/utilities 2024-06-17T15:32:56,754 copying nnunetv2/utilities/helpers.py -> build/lib/nnunetv2/utilities 2024-06-17T15:32:56,756 copying nnunetv2/utilities/overlay_plots.py -> build/lib/nnunetv2/utilities 2024-06-17T15:32:56,758 copying nnunetv2/utilities/collate_outputs.py -> build/lib/nnunetv2/utilities 2024-06-17T15:32:56,760 copying nnunetv2/utilities/utils.py -> build/lib/nnunetv2/utilities 2024-06-17T15:32:56,762 copying nnunetv2/utilities/crossval_split.py -> build/lib/nnunetv2/utilities 2024-06-17T15:32:56,764 copying nnunetv2/utilities/dataset_name_id_conversion.py -> build/lib/nnunetv2/utilities 2024-06-17T15:32:56,766 copying nnunetv2/utilities/json_export.py -> build/lib/nnunetv2/utilities 2024-06-17T15:32:56,767 copying nnunetv2/utilities/file_path_utilities.py -> build/lib/nnunetv2/utilities 2024-06-17T15:32:56,770 copying nnunetv2/utilities/__init__.py -> build/lib/nnunetv2/utilities 2024-06-17T15:32:56,771 copying nnunetv2/utilities/network_initialization.py -> build/lib/nnunetv2/utilities 2024-06-17T15:32:56,772 copying nnunetv2/utilities/ddp_allgather.py -> build/lib/nnunetv2/utilities 2024-06-17T15:32:56,774 copying nnunetv2/utilities/get_network_from_plans.py -> build/lib/nnunetv2/utilities 2024-06-17T15:32:56,776 copying nnunetv2/utilities/default_n_proc_DA.py -> build/lib/nnunetv2/utilities 2024-06-17T15:32:56,777 copying nnunetv2/utilities/find_class_by_name.py -> build/lib/nnunetv2/utilities 2024-06-17T15:32:56,780 creating build/lib/nnunetv2/dataset_conversion 2024-06-17T15:32:56,780 copying nnunetv2/dataset_conversion/Dataset043_BraTS19.py -> build/lib/nnunetv2/dataset_conversion 2024-06-17T15:32:56,783 copying nnunetv2/dataset_conversion/Dataset137_BraTS21.py -> build/lib/nnunetv2/dataset_conversion 2024-06-17T15:32:56,784 copying nnunetv2/dataset_conversion/Dataset224_AbdomenAtlas1.0.py -> build/lib/nnunetv2/dataset_conversion 2024-06-17T15:32:56,786 copying nnunetv2/dataset_conversion/Dataset114_MNMs.py -> build/lib/nnunetv2/dataset_conversion 2024-06-17T15:32:56,788 copying nnunetv2/dataset_conversion/generate_dataset_json.py -> build/lib/nnunetv2/dataset_conversion 2024-06-17T15:32:56,790 copying nnunetv2/dataset_conversion/Dataset218_Amos2022_task1.py -> build/lib/nnunetv2/dataset_conversion 2024-06-17T15:32:56,792 copying nnunetv2/dataset_conversion/Dataset115_EMIDEC.py -> build/lib/nnunetv2/dataset_conversion 2024-06-17T15:32:56,794 copying nnunetv2/dataset_conversion/Dataset120_RoadSegmentation.py -> build/lib/nnunetv2/dataset_conversion 2024-06-17T15:32:56,795 copying nnunetv2/dataset_conversion/__init__.py -> build/lib/nnunetv2/dataset_conversion 2024-06-17T15:32:56,797 copying nnunetv2/dataset_conversion/convert_raw_dataset_from_old_nnunet_format.py -> build/lib/nnunetv2/dataset_conversion 2024-06-17T15:32:56,798 copying nnunetv2/dataset_conversion/Dataset221_AutoPETII_2023.py -> build/lib/nnunetv2/dataset_conversion 2024-06-17T15:32:56,800 copying nnunetv2/dataset_conversion/Dataset073_Fluo_C3DH_A549_SIM.py -> build/lib/nnunetv2/dataset_conversion 2024-06-17T15:32:56,802 copying nnunetv2/dataset_conversion/convert_MSD_dataset.py -> build/lib/nnunetv2/dataset_conversion 2024-06-17T15:32:56,804 copying nnunetv2/dataset_conversion/Dataset988_dummyDataset4.py -> build/lib/nnunetv2/dataset_conversion 2024-06-17T15:32:56,806 copying nnunetv2/dataset_conversion/Dataset042_BraTS18.py -> build/lib/nnunetv2/dataset_conversion 2024-06-17T15:32:56,808 copying nnunetv2/dataset_conversion/Dataset223_AMOS2022postChallenge.py -> build/lib/nnunetv2/dataset_conversion 2024-06-17T15:32:56,810 copying nnunetv2/dataset_conversion/Dataset219_Amos2022_task2.py -> build/lib/nnunetv2/dataset_conversion 2024-06-17T15:32:56,811 copying nnunetv2/dataset_conversion/Dataset220_KiTS2023.py -> build/lib/nnunetv2/dataset_conversion 2024-06-17T15:32:56,813 copying nnunetv2/dataset_conversion/Dataset027_ACDC.py -> build/lib/nnunetv2/dataset_conversion 2024-06-17T15:32:56,816 creating build/lib/nnunetv2/run 2024-06-17T15:32:56,817 copying nnunetv2/run/__init__.py -> build/lib/nnunetv2/run 2024-06-17T15:32:56,818 copying nnunetv2/run/run_training.py -> build/lib/nnunetv2/run 2024-06-17T15:32:56,821 copying nnunetv2/run/load_pretrained_weights.py -> build/lib/nnunetv2/run 2024-06-17T15:32:56,823 creating build/lib/nnunetv2/model_sharing 2024-06-17T15:32:56,824 copying nnunetv2/model_sharing/model_import.py -> build/lib/nnunetv2/model_sharing 2024-06-17T15:32:56,826 copying nnunetv2/model_sharing/entry_points.py -> build/lib/nnunetv2/model_sharing 2024-06-17T15:32:56,828 copying nnunetv2/model_sharing/__init__.py -> build/lib/nnunetv2/model_sharing 2024-06-17T15:32:56,829 copying nnunetv2/model_sharing/model_export.py -> build/lib/nnunetv2/model_sharing 2024-06-17T15:32:56,832 copying nnunetv2/model_sharing/model_download.py -> build/lib/nnunetv2/model_sharing 2024-06-17T15:32:56,834 creating build/lib/nnunetv2/inference 2024-06-17T15:32:56,835 copying nnunetv2/inference/sliding_window_prediction.py -> build/lib/nnunetv2/inference 2024-06-17T15:32:56,837 copying nnunetv2/inference/JHU_inference.py -> build/lib/nnunetv2/inference 2024-06-17T15:32:56,839 copying nnunetv2/inference/data_iterators.py -> build/lib/nnunetv2/inference 2024-06-17T15:32:56,841 copying nnunetv2/inference/__init__.py -> build/lib/nnunetv2/inference 2024-06-17T15:32:56,843 copying nnunetv2/inference/examples.py -> build/lib/nnunetv2/inference 2024-06-17T15:32:56,845 copying nnunetv2/inference/predict_from_raw_data.py -> build/lib/nnunetv2/inference 2024-06-17T15:32:56,848 copying nnunetv2/inference/export_prediction.py -> build/lib/nnunetv2/inference 2024-06-17T15:32:56,850 creating build/lib/nnunetv2/preprocessing 2024-06-17T15:32:56,851 copying nnunetv2/preprocessing/__init__.py -> build/lib/nnunetv2/preprocessing 2024-06-17T15:32:56,853 creating build/lib/nnunetv2/tests 2024-06-17T15:32:56,854 copying nnunetv2/tests/__init__.py -> build/lib/nnunetv2/tests 2024-06-17T15:32:56,856 creating build/lib/nnunetv2/training 2024-06-17T15:32:56,857 copying nnunetv2/training/__init__.py -> build/lib/nnunetv2/training 2024-06-17T15:32:56,859 creating build/lib/nnunetv2/batch_running 2024-06-17T15:32:56,860 copying nnunetv2/batch_running/collect_results_custom_Decathlon_2d.py -> build/lib/nnunetv2/batch_running 2024-06-17T15:32:56,861 copying nnunetv2/batch_running/collect_results_custom_Decathlon.py -> build/lib/nnunetv2/batch_running 2024-06-17T15:32:56,863 copying nnunetv2/batch_running/__init__.py -> build/lib/nnunetv2/batch_running 2024-06-17T15:32:56,865 copying nnunetv2/batch_running/generate_lsf_runs_customDecathlon.py -> build/lib/nnunetv2/batch_running 2024-06-17T15:32:56,867 creating build/lib/nnunetv2/ensembling 2024-06-17T15:32:56,868 copying nnunetv2/ensembling/ensemble.py -> build/lib/nnunetv2/ensembling 2024-06-17T15:32:56,870 copying nnunetv2/ensembling/__init__.py -> build/lib/nnunetv2/ensembling 2024-06-17T15:32:56,872 creating build/lib/nnunetv2/experiment_planning/dataset_fingerprint 2024-06-17T15:32:56,873 copying nnunetv2/experiment_planning/dataset_fingerprint/fingerprint_extractor.py -> build/lib/nnunetv2/experiment_planning/dataset_fingerprint 2024-06-17T15:32:56,876 copying nnunetv2/experiment_planning/dataset_fingerprint/__init__.py -> build/lib/nnunetv2/experiment_planning/dataset_fingerprint 2024-06-17T15:32:56,878 creating build/lib/nnunetv2/experiment_planning/plans_for_pretraining 2024-06-17T15:32:56,879 copying nnunetv2/experiment_planning/plans_for_pretraining/__init__.py -> build/lib/nnunetv2/experiment_planning/plans_for_pretraining 2024-06-17T15:32:56,880 copying nnunetv2/experiment_planning/plans_for_pretraining/move_plans_between_datasets.py -> build/lib/nnunetv2/experiment_planning/plans_for_pretraining 2024-06-17T15:32:56,883 creating build/lib/nnunetv2/experiment_planning/experiment_planners 2024-06-17T15:32:56,884 copying nnunetv2/experiment_planning/experiment_planners/__init__.py -> build/lib/nnunetv2/experiment_planning/experiment_planners 2024-06-17T15:32:56,886 copying nnunetv2/experiment_planning/experiment_planners/network_topology.py -> build/lib/nnunetv2/experiment_planning/experiment_planners 2024-06-17T15:32:56,887 copying nnunetv2/experiment_planning/experiment_planners/default_experiment_planner.py -> build/lib/nnunetv2/experiment_planning/experiment_planners 2024-06-17T15:32:56,890 copying nnunetv2/experiment_planning/experiment_planners/resencUNet_planner.py -> build/lib/nnunetv2/experiment_planning/experiment_planners 2024-06-17T15:32:56,894 creating build/lib/nnunetv2/experiment_planning/experiment_planners/residual_unets 2024-06-17T15:32:56,895 copying nnunetv2/experiment_planning/experiment_planners/residual_unets/residual_encoder_unet_planners.py -> build/lib/nnunetv2/experiment_planning/experiment_planners/residual_unets 2024-06-17T15:32:56,897 copying nnunetv2/experiment_planning/experiment_planners/residual_unets/__init__.py -> build/lib/nnunetv2/experiment_planning/experiment_planners/residual_unets 2024-06-17T15:32:56,899 creating build/lib/nnunetv2/experiment_planning/experiment_planners/resampling 2024-06-17T15:32:56,900 copying nnunetv2/experiment_planning/experiment_planners/resampling/resample_with_torch.py -> build/lib/nnunetv2/experiment_planning/experiment_planners/resampling 2024-06-17T15:32:56,902 copying nnunetv2/experiment_planning/experiment_planners/resampling/__init__.py -> build/lib/nnunetv2/experiment_planning/experiment_planners/resampling 2024-06-17T15:32:56,904 creating build/lib/nnunetv2/utilities/label_handling 2024-06-17T15:32:56,905 copying nnunetv2/utilities/label_handling/label_handling.py -> build/lib/nnunetv2/utilities/label_handling 2024-06-17T15:32:56,907 copying nnunetv2/utilities/label_handling/__init__.py -> build/lib/nnunetv2/utilities/label_handling 2024-06-17T15:32:56,909 creating build/lib/nnunetv2/utilities/plans_handling 2024-06-17T15:32:56,910 copying nnunetv2/utilities/plans_handling/plans_handler.py -> build/lib/nnunetv2/utilities/plans_handling 2024-06-17T15:32:56,912 copying nnunetv2/utilities/plans_handling/__init__.py -> build/lib/nnunetv2/utilities/plans_handling 2024-06-17T15:32:56,914 creating build/lib/nnunetv2/dataset_conversion/datasets_for_integration_tests 2024-06-17T15:32:56,915 copying nnunetv2/dataset_conversion/datasets_for_integration_tests/Dataset996_IntegrationTest_Hippocampus_regions_ignore.py -> build/lib/nnunetv2/dataset_conversion/datasets_for_integration_tests 2024-06-17T15:32:56,917 copying nnunetv2/dataset_conversion/datasets_for_integration_tests/Dataset999_IntegrationTest_Hippocampus.py -> build/lib/nnunetv2/dataset_conversion/datasets_for_integration_tests 2024-06-17T15:32:56,919 copying nnunetv2/dataset_conversion/datasets_for_integration_tests/__init__.py -> build/lib/nnunetv2/dataset_conversion/datasets_for_integration_tests 2024-06-17T15:32:56,920 copying nnunetv2/dataset_conversion/datasets_for_integration_tests/Dataset998_IntegrationTest_Hippocampus_ignore.py -> build/lib/nnunetv2/dataset_conversion/datasets_for_integration_tests 2024-06-17T15:32:56,922 copying nnunetv2/dataset_conversion/datasets_for_integration_tests/Dataset997_IntegrationTest_Hippocampus_regions.py -> build/lib/nnunetv2/dataset_conversion/datasets_for_integration_tests 2024-06-17T15:32:56,924 creating build/lib/nnunetv2/preprocessing/preprocessors 2024-06-17T15:32:56,925 copying nnunetv2/preprocessing/preprocessors/__init__.py -> build/lib/nnunetv2/preprocessing/preprocessors 2024-06-17T15:32:56,926 copying nnunetv2/preprocessing/preprocessors/default_preprocessor.py -> build/lib/nnunetv2/preprocessing/preprocessors 2024-06-17T15:32:56,929 creating build/lib/nnunetv2/preprocessing/resampling 2024-06-17T15:32:56,930 copying nnunetv2/preprocessing/resampling/utils.py -> build/lib/nnunetv2/preprocessing/resampling 2024-06-17T15:32:56,932 copying nnunetv2/preprocessing/resampling/default_resampling.py -> build/lib/nnunetv2/preprocessing/resampling 2024-06-17T15:32:56,934 copying nnunetv2/preprocessing/resampling/__init__.py -> build/lib/nnunetv2/preprocessing/resampling 2024-06-17T15:32:56,936 copying nnunetv2/preprocessing/resampling/resample_torch.py -> build/lib/nnunetv2/preprocessing/resampling 2024-06-17T15:32:56,938 creating build/lib/nnunetv2/preprocessing/normalization 2024-06-17T15:32:56,939 copying nnunetv2/preprocessing/normalization/default_normalization_schemes.py -> build/lib/nnunetv2/preprocessing/normalization 2024-06-17T15:32:56,941 copying nnunetv2/preprocessing/normalization/__init__.py -> build/lib/nnunetv2/preprocessing/normalization 2024-06-17T15:32:56,943 copying nnunetv2/preprocessing/normalization/map_channel_name_to_normalization.py -> build/lib/nnunetv2/preprocessing/normalization 2024-06-17T15:32:56,945 creating build/lib/nnunetv2/preprocessing/cropping 2024-06-17T15:32:56,946 copying nnunetv2/preprocessing/cropping/cropping.py -> build/lib/nnunetv2/preprocessing/cropping 2024-06-17T15:32:56,948 copying nnunetv2/preprocessing/cropping/__init__.py -> build/lib/nnunetv2/preprocessing/cropping 2024-06-17T15:32:56,950 creating build/lib/nnunetv2/tests/integration_tests 2024-06-17T15:32:56,950 copying nnunetv2/tests/integration_tests/run_integration_test_bestconfig_inference.py -> build/lib/nnunetv2/tests/integration_tests 2024-06-17T15:32:56,952 copying nnunetv2/tests/integration_tests/add_lowres_and_cascade.py -> build/lib/nnunetv2/tests/integration_tests 2024-06-17T15:32:56,954 copying nnunetv2/tests/integration_tests/__init__.py -> build/lib/nnunetv2/tests/integration_tests 2024-06-17T15:32:56,955 copying nnunetv2/tests/integration_tests/cleanup_integration_test.py -> build/lib/nnunetv2/tests/integration_tests 2024-06-17T15:32:56,957 creating build/lib/nnunetv2/training/lr_scheduler 2024-06-17T15:32:56,958 copying nnunetv2/training/lr_scheduler/__init__.py -> build/lib/nnunetv2/training/lr_scheduler 2024-06-17T15:32:56,960 copying nnunetv2/training/lr_scheduler/polylr.py -> build/lib/nnunetv2/training/lr_scheduler 2024-06-17T15:32:56,962 creating build/lib/nnunetv2/training/logging 2024-06-17T15:32:56,963 copying nnunetv2/training/logging/__init__.py -> build/lib/nnunetv2/training/logging 2024-06-17T15:32:56,964 copying nnunetv2/training/logging/nnunet_logger.py -> build/lib/nnunetv2/training/logging 2024-06-17T15:32:56,966 creating build/lib/nnunetv2/training/dataloading 2024-06-17T15:32:56,967 copying nnunetv2/training/dataloading/base_data_loader.py -> build/lib/nnunetv2/training/dataloading 2024-06-17T15:32:56,970 copying nnunetv2/training/dataloading/utils.py -> build/lib/nnunetv2/training/dataloading 2024-06-17T15:32:56,971 copying nnunetv2/training/dataloading/data_loader_2d.py -> build/lib/nnunetv2/training/dataloading 2024-06-17T15:32:56,973 copying nnunetv2/training/dataloading/nnunet_dataset.py -> build/lib/nnunetv2/training/dataloading 2024-06-17T15:32:56,976 copying nnunetv2/training/dataloading/__init__.py -> build/lib/nnunetv2/training/dataloading 2024-06-17T15:32:56,977 copying nnunetv2/training/dataloading/data_loader_3d.py -> build/lib/nnunetv2/training/dataloading 2024-06-17T15:32:56,979 creating build/lib/nnunetv2/training/data_augmentation 2024-06-17T15:32:56,980 copying nnunetv2/training/data_augmentation/compute_initial_patch_size.py -> build/lib/nnunetv2/training/data_augmentation 2024-06-17T15:32:56,982 copying nnunetv2/training/data_augmentation/__init__.py -> build/lib/nnunetv2/training/data_augmentation 2024-06-17T15:32:56,984 creating build/lib/nnunetv2/training/loss 2024-06-17T15:32:56,985 copying nnunetv2/training/loss/deep_supervision.py -> build/lib/nnunetv2/training/loss 2024-06-17T15:32:56,987 copying nnunetv2/training/loss/dice.py -> build/lib/nnunetv2/training/loss 2024-06-17T15:32:56,989 copying nnunetv2/training/loss/__init__.py -> build/lib/nnunetv2/training/loss 2024-06-17T15:32:56,991 copying nnunetv2/training/loss/robust_ce_loss.py -> build/lib/nnunetv2/training/loss 2024-06-17T15:32:56,992 copying nnunetv2/training/loss/compound_losses.py -> build/lib/nnunetv2/training/loss 2024-06-17T15:32:56,995 creating build/lib/nnunetv2/training/nnUNetTrainer 2024-06-17T15:32:56,996 copying nnunetv2/training/nnUNetTrainer/__init__.py -> build/lib/nnunetv2/training/nnUNetTrainer 2024-06-17T15:32:56,998 copying nnunetv2/training/nnUNetTrainer/nnUNetTrainer.py -> build/lib/nnunetv2/training/nnUNetTrainer 2024-06-17T15:32:57,001 creating build/lib/nnunetv2/training/data_augmentation/custom_transforms 2024-06-17T15:32:57,002 copying nnunetv2/training/data_augmentation/custom_transforms/cascade_transforms.py -> build/lib/nnunetv2/training/data_augmentation/custom_transforms 2024-06-17T15:32:57,004 copying nnunetv2/training/data_augmentation/custom_transforms/transforms_for_dummy_2d.py -> build/lib/nnunetv2/training/data_augmentation/custom_transforms 2024-06-17T15:32:57,006 copying nnunetv2/training/data_augmentation/custom_transforms/__init__.py -> build/lib/nnunetv2/training/data_augmentation/custom_transforms 2024-06-17T15:32:57,008 copying nnunetv2/training/data_augmentation/custom_transforms/masking.py -> build/lib/nnunetv2/training/data_augmentation/custom_transforms 2024-06-17T15:32:57,009 copying nnunetv2/training/data_augmentation/custom_transforms/deep_supervision_donwsampling.py -> build/lib/nnunetv2/training/data_augmentation/custom_transforms 2024-06-17T15:32:57,011 copying nnunetv2/training/data_augmentation/custom_transforms/region_based_training.py -> build/lib/nnunetv2/training/data_augmentation/custom_transforms 2024-06-17T15:32:57,013 creating build/lib/nnunetv2/training/nnUNetTrainer/variants 2024-06-17T15:32:57,014 copying nnunetv2/training/nnUNetTrainer/variants/__init__.py -> build/lib/nnunetv2/training/nnUNetTrainer/variants 2024-06-17T15:32:57,016 creating build/lib/nnunetv2/training/nnUNetTrainer/variants/sampling 2024-06-17T15:32:57,016 copying nnunetv2/training/nnUNetTrainer/variants/sampling/nnUNetTrainer_probabilisticOversampling.py -> build/lib/nnunetv2/training/nnUNetTrainer/variants/sampling 2024-06-17T15:32:57,019 copying nnunetv2/training/nnUNetTrainer/variants/sampling/__init__.py -> build/lib/nnunetv2/training/nnUNetTrainer/variants/sampling 2024-06-17T15:32:57,020 creating build/lib/nnunetv2/training/nnUNetTrainer/variants/network_architecture 2024-06-17T15:32:57,021 copying nnunetv2/training/nnUNetTrainer/variants/network_architecture/nnUNetTrainerNoDeepSupervision.py -> build/lib/nnunetv2/training/nnUNetTrainer/variants/network_architecture 2024-06-17T15:32:57,023 copying nnunetv2/training/nnUNetTrainer/variants/network_architecture/__init__.py -> build/lib/nnunetv2/training/nnUNetTrainer/variants/network_architecture 2024-06-17T15:32:57,024 copying nnunetv2/training/nnUNetTrainer/variants/network_architecture/nnUNetTrainerBN.py -> build/lib/nnunetv2/training/nnUNetTrainer/variants/network_architecture 2024-06-17T15:32:57,027 creating build/lib/nnunetv2/training/nnUNetTrainer/variants/lr_schedule 2024-06-17T15:32:57,027 copying nnunetv2/training/nnUNetTrainer/variants/lr_schedule/nnUNetTrainerCosAnneal.py -> build/lib/nnunetv2/training/nnUNetTrainer/variants/lr_schedule 2024-06-17T15:32:57,029 copying nnunetv2/training/nnUNetTrainer/variants/lr_schedule/__init__.py -> build/lib/nnunetv2/training/nnUNetTrainer/variants/lr_schedule 2024-06-17T15:32:57,031 creating build/lib/nnunetv2/training/nnUNetTrainer/variants/training_length 2024-06-17T15:32:57,032 copying nnunetv2/training/nnUNetTrainer/variants/training_length/__init__.py -> build/lib/nnunetv2/training/nnUNetTrainer/variants/training_length 2024-06-17T15:32:57,033 copying nnunetv2/training/nnUNetTrainer/variants/training_length/nnUNetTrainer_Xepochs.py -> build/lib/nnunetv2/training/nnUNetTrainer/variants/training_length 2024-06-17T15:32:57,036 copying nnunetv2/training/nnUNetTrainer/variants/training_length/nnUNetTrainer_Xepochs_NoMirroring.py -> build/lib/nnunetv2/training/nnUNetTrainer/variants/training_length 2024-06-17T15:32:57,038 creating build/lib/nnunetv2/training/nnUNetTrainer/variants/benchmarking 2024-06-17T15:32:57,039 copying nnunetv2/training/nnUNetTrainer/variants/benchmarking/nnUNetTrainerBenchmark_5epochs_noDataLoading.py -> build/lib/nnunetv2/training/nnUNetTrainer/variants/benchmarking 2024-06-17T15:32:57,041 copying nnunetv2/training/nnUNetTrainer/variants/benchmarking/__init__.py -> build/lib/nnunetv2/training/nnUNetTrainer/variants/benchmarking 2024-06-17T15:32:57,043 copying nnunetv2/training/nnUNetTrainer/variants/benchmarking/nnUNetTrainerBenchmark_5epochs.py -> build/lib/nnunetv2/training/nnUNetTrainer/variants/benchmarking 2024-06-17T15:32:57,045 creating build/lib/nnunetv2/training/nnUNetTrainer/variants/data_augmentation 2024-06-17T15:32:57,046 copying nnunetv2/training/nnUNetTrainer/variants/data_augmentation/nnUNetTrainerNoMirroring.py -> build/lib/nnunetv2/training/nnUNetTrainer/variants/data_augmentation 2024-06-17T15:32:57,048 copying nnunetv2/training/nnUNetTrainer/variants/data_augmentation/nnUNetTrainerDA5.py -> build/lib/nnunetv2/training/nnUNetTrainer/variants/data_augmentation 2024-06-17T15:32:57,051 copying nnunetv2/training/nnUNetTrainer/variants/data_augmentation/nnUNetTrainerNoDA.py -> build/lib/nnunetv2/training/nnUNetTrainer/variants/data_augmentation 2024-06-17T15:32:57,052 copying nnunetv2/training/nnUNetTrainer/variants/data_augmentation/__init__.py -> build/lib/nnunetv2/training/nnUNetTrainer/variants/data_augmentation 2024-06-17T15:32:57,054 copying nnunetv2/training/nnUNetTrainer/variants/data_augmentation/nnUNetTrainerDAOrd0.py -> build/lib/nnunetv2/training/nnUNetTrainer/variants/data_augmentation 2024-06-17T15:32:57,056 creating build/lib/nnunetv2/training/nnUNetTrainer/variants/loss 2024-06-17T15:32:57,057 copying nnunetv2/training/nnUNetTrainer/variants/loss/nnUNetTrainerCELoss.py -> build/lib/nnunetv2/training/nnUNetTrainer/variants/loss 2024-06-17T15:32:57,059 copying nnunetv2/training/nnUNetTrainer/variants/loss/__init__.py -> build/lib/nnunetv2/training/nnUNetTrainer/variants/loss 2024-06-17T15:32:57,060 copying nnunetv2/training/nnUNetTrainer/variants/loss/nnUNetTrainerDiceLoss.py -> build/lib/nnunetv2/training/nnUNetTrainer/variants/loss 2024-06-17T15:32:57,062 copying nnunetv2/training/nnUNetTrainer/variants/loss/nnUNetTrainerTopkLoss.py -> build/lib/nnunetv2/training/nnUNetTrainer/variants/loss 2024-06-17T15:32:57,065 creating build/lib/nnunetv2/training/nnUNetTrainer/variants/custom 2024-06-17T15:32:57,065 copying nnunetv2/training/nnUNetTrainer/variants/custom/__init__.py -> build/lib/nnunetv2/training/nnUNetTrainer/variants/custom 2024-06-17T15:32:57,067 copying nnunetv2/training/nnUNetTrainer/variants/custom/customTrainersMOSAIC.py -> build/lib/nnunetv2/training/nnUNetTrainer/variants/custom 2024-06-17T15:32:57,069 creating build/lib/nnunetv2/training/nnUNetTrainer/variants/optimizer 2024-06-17T15:32:57,070 copying nnunetv2/training/nnUNetTrainer/variants/optimizer/nnUNetTrainerAdan.py -> build/lib/nnunetv2/training/nnUNetTrainer/variants/optimizer 2024-06-17T15:32:57,072 copying nnunetv2/training/nnUNetTrainer/variants/optimizer/__init__.py -> build/lib/nnunetv2/training/nnUNetTrainer/variants/optimizer 2024-06-17T15:32:57,074 copying nnunetv2/training/nnUNetTrainer/variants/optimizer/nnUNetTrainerAdam.py -> build/lib/nnunetv2/training/nnUNetTrainer/variants/optimizer 2024-06-17T15:32:57,076 creating build/lib/nnunetv2/batch_running/release_trainings 2024-06-17T15:32:57,077 copying nnunetv2/batch_running/release_trainings/__init__.py -> build/lib/nnunetv2/batch_running/release_trainings 2024-06-17T15:32:57,078 creating build/lib/nnunetv2/batch_running/benchmarking 2024-06-17T15:32:57,079 copying nnunetv2/batch_running/benchmarking/generate_benchmarking_commands.py -> build/lib/nnunetv2/batch_running/benchmarking 2024-06-17T15:32:57,081 copying nnunetv2/batch_running/benchmarking/__init__.py -> build/lib/nnunetv2/batch_running/benchmarking 2024-06-17T15:32:57,083 copying nnunetv2/batch_running/benchmarking/summarize_benchmark_results.py -> build/lib/nnunetv2/batch_running/benchmarking 2024-06-17T15:32:57,085 creating build/lib/nnunetv2/batch_running/release_trainings/nnunetv2_v1 2024-06-17T15:32:57,086 copying nnunetv2/batch_running/release_trainings/nnunetv2_v1/generate_lsf_commands.py -> build/lib/nnunetv2/batch_running/release_trainings/nnunetv2_v1 2024-06-17T15:32:57,088 copying nnunetv2/batch_running/release_trainings/nnunetv2_v1/collect_results.py -> build/lib/nnunetv2/batch_running/release_trainings/nnunetv2_v1 2024-06-17T15:32:57,090 copying nnunetv2/batch_running/release_trainings/nnunetv2_v1/__init__.py -> build/lib/nnunetv2/batch_running/release_trainings/nnunetv2_v1 2024-06-17T15:32:57,092 running egg_info 2024-06-17T15:32:57,095 writing nnunetv2_bm_custom.egg-info/PKG-INFO 2024-06-17T15:32:57,100 writing dependency_links to nnunetv2_bm_custom.egg-info/dependency_links.txt 2024-06-17T15:32:57,102 writing entry points to nnunetv2_bm_custom.egg-info/entry_points.txt 2024-06-17T15:32:57,105 writing requirements to nnunetv2_bm_custom.egg-info/requires.txt 2024-06-17T15:32:57,106 writing top-level names to nnunetv2_bm_custom.egg-info/top_level.txt 2024-06-17T15:32:57,147 reading manifest file 'nnunetv2_bm_custom.egg-info/SOURCES.txt' 2024-06-17T15:32:57,153 adding license file 'LICENSE' 2024-06-17T15:32:57,162 writing manifest file 'nnunetv2_bm_custom.egg-info/SOURCES.txt' 2024-06-17T15:32:57,208 installing to build/bdist.linux-armv7l/wheel 2024-06-17T15:32:57,209 running install 2024-06-17T15:32:57,233 running install_lib 2024-06-17T15:32:57,237 creating build/bdist.linux-armv7l 2024-06-17T15:32:57,237 creating build/bdist.linux-armv7l/wheel 2024-06-17T15:32:57,239 creating build/bdist.linux-armv7l/wheel/nnunetv2 2024-06-17T15:32:57,240 creating build/bdist.linux-armv7l/wheel/nnunetv2/postprocessing 2024-06-17T15:32:57,241 copying build/lib/nnunetv2/postprocessing/__init__.py -> build/bdist.linux-armv7l/wheel/nnunetv2/postprocessing 2024-06-17T15:32:57,243 copying build/lib/nnunetv2/postprocessing/remove_connected_components.py -> build/bdist.linux-armv7l/wheel/nnunetv2/postprocessing 2024-06-17T15:32:57,246 creating build/bdist.linux-armv7l/wheel/nnunetv2/evaluation 2024-06-17T15:32:57,247 copying build/lib/nnunetv2/evaluation/accumulate_cv_results.py -> build/bdist.linux-armv7l/wheel/nnunetv2/evaluation 2024-06-17T15:32:57,249 copying build/lib/nnunetv2/evaluation/evaluate_predictions.py -> build/bdist.linux-armv7l/wheel/nnunetv2/evaluation 2024-06-17T15:32:57,251 copying build/lib/nnunetv2/evaluation/__init__.py -> build/bdist.linux-armv7l/wheel/nnunetv2/evaluation 2024-06-17T15:32:57,252 copying build/lib/nnunetv2/evaluation/find_best_configuration.py -> build/bdist.linux-armv7l/wheel/nnunetv2/evaluation 2024-06-17T15:32:57,255 creating build/bdist.linux-armv7l/wheel/nnunetv2/experiment_planning 2024-06-17T15:32:57,257 creating build/bdist.linux-armv7l/wheel/nnunetv2/experiment_planning/dataset_fingerprint 2024-06-17T15:32:57,258 copying build/lib/nnunetv2/experiment_planning/dataset_fingerprint/fingerprint_extractor.py -> build/bdist.linux-armv7l/wheel/nnunetv2/experiment_planning/dataset_fingerprint 2024-06-17T15:32:57,260 copying build/lib/nnunetv2/experiment_planning/dataset_fingerprint/__init__.py -> build/bdist.linux-armv7l/wheel/nnunetv2/experiment_planning/dataset_fingerprint 2024-06-17T15:32:57,261 copying build/lib/nnunetv2/experiment_planning/verify_dataset_integrity.py -> build/bdist.linux-armv7l/wheel/nnunetv2/experiment_planning 2024-06-17T15:32:57,264 creating build/bdist.linux-armv7l/wheel/nnunetv2/experiment_planning/plans_for_pretraining 2024-06-17T15:32:57,265 copying build/lib/nnunetv2/experiment_planning/plans_for_pretraining/__init__.py -> build/bdist.linux-armv7l/wheel/nnunetv2/experiment_planning/plans_for_pretraining 2024-06-17T15:32:57,267 copying build/lib/nnunetv2/experiment_planning/plans_for_pretraining/move_plans_between_datasets.py -> build/bdist.linux-armv7l/wheel/nnunetv2/experiment_planning/plans_for_pretraining 2024-06-17T15:32:57,269 copying build/lib/nnunetv2/experiment_planning/__init__.py -> build/bdist.linux-armv7l/wheel/nnunetv2/experiment_planning 2024-06-17T15:32:57,270 copying build/lib/nnunetv2/experiment_planning/plan_and_preprocess_entrypoints.py -> build/bdist.linux-armv7l/wheel/nnunetv2/experiment_planning 2024-06-17T15:32:57,273 copying build/lib/nnunetv2/experiment_planning/plan_and_preprocess_api.py -> build/bdist.linux-armv7l/wheel/nnunetv2/experiment_planning 2024-06-17T15:32:57,276 creating build/bdist.linux-armv7l/wheel/nnunetv2/experiment_planning/experiment_planners 2024-06-17T15:32:57,277 creating build/bdist.linux-armv7l/wheel/nnunetv2/experiment_planning/experiment_planners/residual_unets 2024-06-17T15:32:57,278 copying build/lib/nnunetv2/experiment_planning/experiment_planners/residual_unets/residual_encoder_unet_planners.py -> build/bdist.linux-armv7l/wheel/nnunetv2/experiment_planning/experiment_planners/residual_unets 2024-06-17T15:32:57,281 copying build/lib/nnunetv2/experiment_planning/experiment_planners/residual_unets/__init__.py -> build/bdist.linux-armv7l/wheel/nnunetv2/experiment_planning/experiment_planners/residual_unets 2024-06-17T15:32:57,283 copying build/lib/nnunetv2/experiment_planning/experiment_planners/__init__.py -> build/bdist.linux-armv7l/wheel/nnunetv2/experiment_planning/experiment_planners 2024-06-17T15:32:57,284 creating build/bdist.linux-armv7l/wheel/nnunetv2/experiment_planning/experiment_planners/resampling 2024-06-17T15:32:57,286 copying build/lib/nnunetv2/experiment_planning/experiment_planners/resampling/resample_with_torch.py -> build/bdist.linux-armv7l/wheel/nnunetv2/experiment_planning/experiment_planners/resampling 2024-06-17T15:32:57,288 copying build/lib/nnunetv2/experiment_planning/experiment_planners/resampling/__init__.py -> build/bdist.linux-armv7l/wheel/nnunetv2/experiment_planning/experiment_planners/resampling 2024-06-17T15:32:57,289 copying build/lib/nnunetv2/experiment_planning/experiment_planners/network_topology.py -> build/bdist.linux-armv7l/wheel/nnunetv2/experiment_planning/experiment_planners 2024-06-17T15:32:57,291 copying build/lib/nnunetv2/experiment_planning/experiment_planners/default_experiment_planner.py -> build/bdist.linux-armv7l/wheel/nnunetv2/experiment_planning/experiment_planners 2024-06-17T15:32:57,294 copying build/lib/nnunetv2/experiment_planning/experiment_planners/resencUNet_planner.py -> build/bdist.linux-armv7l/wheel/nnunetv2/experiment_planning/experiment_planners 2024-06-17T15:32:57,296 creating build/bdist.linux-armv7l/wheel/nnunetv2/imageio 2024-06-17T15:32:57,297 copying build/lib/nnunetv2/imageio/natural_image_reader_writer.py -> build/bdist.linux-armv7l/wheel/nnunetv2/imageio 2024-06-17T15:32:57,299 copying build/lib/nnunetv2/imageio/__init__.py -> build/bdist.linux-armv7l/wheel/nnunetv2/imageio 2024-06-17T15:32:57,301 copying build/lib/nnunetv2/imageio/reader_writer_registry.py -> build/bdist.linux-armv7l/wheel/nnunetv2/imageio 2024-06-17T15:32:57,303 copying build/lib/nnunetv2/imageio/base_reader_writer.py -> build/bdist.linux-armv7l/wheel/nnunetv2/imageio 2024-06-17T15:32:57,305 copying build/lib/nnunetv2/imageio/nibabel_reader_writer.py -> build/bdist.linux-armv7l/wheel/nnunetv2/imageio 2024-06-17T15:32:57,307 copying build/lib/nnunetv2/imageio/tif_reader_writer.py -> build/bdist.linux-armv7l/wheel/nnunetv2/imageio 2024-06-17T15:32:57,309 copying build/lib/nnunetv2/imageio/simpleitk_reader_writer.py -> build/bdist.linux-armv7l/wheel/nnunetv2/imageio 2024-06-17T15:32:57,311 copying build/lib/nnunetv2/configuration.py -> build/bdist.linux-armv7l/wheel/nnunetv2 2024-06-17T15:32:57,313 creating build/bdist.linux-armv7l/wheel/nnunetv2/utilities 2024-06-17T15:32:57,314 copying build/lib/nnunetv2/utilities/helpers.py -> build/bdist.linux-armv7l/wheel/nnunetv2/utilities 2024-06-17T15:32:57,316 copying build/lib/nnunetv2/utilities/overlay_plots.py -> build/bdist.linux-armv7l/wheel/nnunetv2/utilities 2024-06-17T15:32:57,319 copying build/lib/nnunetv2/utilities/collate_outputs.py -> build/bdist.linux-armv7l/wheel/nnunetv2/utilities 2024-06-17T15:32:57,321 creating build/bdist.linux-armv7l/wheel/nnunetv2/utilities/label_handling 2024-06-17T15:32:57,322 copying build/lib/nnunetv2/utilities/label_handling/label_handling.py -> build/bdist.linux-armv7l/wheel/nnunetv2/utilities/label_handling 2024-06-17T15:32:57,324 copying build/lib/nnunetv2/utilities/label_handling/__init__.py -> build/bdist.linux-armv7l/wheel/nnunetv2/utilities/label_handling 2024-06-17T15:32:57,326 copying build/lib/nnunetv2/utilities/utils.py -> build/bdist.linux-armv7l/wheel/nnunetv2/utilities 2024-06-17T15:32:57,328 copying build/lib/nnunetv2/utilities/crossval_split.py -> build/bdist.linux-armv7l/wheel/nnunetv2/utilities 2024-06-17T15:32:57,329 copying build/lib/nnunetv2/utilities/dataset_name_id_conversion.py -> build/bdist.linux-armv7l/wheel/nnunetv2/utilities 2024-06-17T15:32:57,331 creating build/bdist.linux-armv7l/wheel/nnunetv2/utilities/plans_handling 2024-06-17T15:32:57,332 copying build/lib/nnunetv2/utilities/plans_handling/plans_handler.py -> build/bdist.linux-armv7l/wheel/nnunetv2/utilities/plans_handling 2024-06-17T15:32:57,335 copying build/lib/nnunetv2/utilities/plans_handling/__init__.py -> build/bdist.linux-armv7l/wheel/nnunetv2/utilities/plans_handling 2024-06-17T15:32:57,336 copying build/lib/nnunetv2/utilities/json_export.py -> build/bdist.linux-armv7l/wheel/nnunetv2/utilities 2024-06-17T15:32:57,338 copying build/lib/nnunetv2/utilities/file_path_utilities.py -> build/bdist.linux-armv7l/wheel/nnunetv2/utilities 2024-06-17T15:32:57,340 copying build/lib/nnunetv2/utilities/__init__.py -> build/bdist.linux-armv7l/wheel/nnunetv2/utilities 2024-06-17T15:32:57,342 copying build/lib/nnunetv2/utilities/network_initialization.py -> build/bdist.linux-armv7l/wheel/nnunetv2/utilities 2024-06-17T15:32:57,343 copying build/lib/nnunetv2/utilities/ddp_allgather.py -> build/bdist.linux-armv7l/wheel/nnunetv2/utilities 2024-06-17T15:32:57,345 copying build/lib/nnunetv2/utilities/get_network_from_plans.py -> build/bdist.linux-armv7l/wheel/nnunetv2/utilities 2024-06-17T15:32:57,347 copying build/lib/nnunetv2/utilities/default_n_proc_DA.py -> build/bdist.linux-armv7l/wheel/nnunetv2/utilities 2024-06-17T15:32:57,349 copying build/lib/nnunetv2/utilities/find_class_by_name.py -> build/bdist.linux-armv7l/wheel/nnunetv2/utilities 2024-06-17T15:32:57,351 creating build/bdist.linux-armv7l/wheel/nnunetv2/dataset_conversion 2024-06-17T15:32:57,352 copying build/lib/nnunetv2/dataset_conversion/Dataset043_BraTS19.py -> build/bdist.linux-armv7l/wheel/nnunetv2/dataset_conversion 2024-06-17T15:32:57,354 copying build/lib/nnunetv2/dataset_conversion/Dataset137_BraTS21.py -> build/bdist.linux-armv7l/wheel/nnunetv2/dataset_conversion 2024-06-17T15:32:57,356 copying build/lib/nnunetv2/dataset_conversion/Dataset224_AbdomenAtlas1.0.py -> build/bdist.linux-armv7l/wheel/nnunetv2/dataset_conversion 2024-06-17T15:32:57,358 copying build/lib/nnunetv2/dataset_conversion/Dataset114_MNMs.py -> build/bdist.linux-armv7l/wheel/nnunetv2/dataset_conversion 2024-06-17T15:32:57,360 copying build/lib/nnunetv2/dataset_conversion/generate_dataset_json.py -> build/bdist.linux-armv7l/wheel/nnunetv2/dataset_conversion 2024-06-17T15:32:57,362 copying build/lib/nnunetv2/dataset_conversion/Dataset218_Amos2022_task1.py -> build/bdist.linux-armv7l/wheel/nnunetv2/dataset_conversion 2024-06-17T15:32:57,364 copying build/lib/nnunetv2/dataset_conversion/Dataset115_EMIDEC.py -> build/bdist.linux-armv7l/wheel/nnunetv2/dataset_conversion 2024-06-17T15:32:57,366 copying build/lib/nnunetv2/dataset_conversion/Dataset120_RoadSegmentation.py -> build/bdist.linux-armv7l/wheel/nnunetv2/dataset_conversion 2024-06-17T15:32:57,368 copying build/lib/nnunetv2/dataset_conversion/__init__.py -> build/bdist.linux-armv7l/wheel/nnunetv2/dataset_conversion 2024-06-17T15:32:57,369 copying build/lib/nnunetv2/dataset_conversion/convert_raw_dataset_from_old_nnunet_format.py -> build/bdist.linux-armv7l/wheel/nnunetv2/dataset_conversion 2024-06-17T15:32:57,371 copying build/lib/nnunetv2/dataset_conversion/Dataset221_AutoPETII_2023.py -> build/bdist.linux-armv7l/wheel/nnunetv2/dataset_conversion 2024-06-17T15:32:57,373 creating build/bdist.linux-armv7l/wheel/nnunetv2/dataset_conversion/datasets_for_integration_tests 2024-06-17T15:32:57,374 copying build/lib/nnunetv2/dataset_conversion/datasets_for_integration_tests/Dataset996_IntegrationTest_Hippocampus_regions_ignore.py -> build/bdist.linux-armv7l/wheel/nnunetv2/dataset_conversion/datasets_for_integration_tests 2024-06-17T15:32:57,377 copying build/lib/nnunetv2/dataset_conversion/datasets_for_integration_tests/Dataset999_IntegrationTest_Hippocampus.py -> build/bdist.linux-armv7l/wheel/nnunetv2/dataset_conversion/datasets_for_integration_tests 2024-06-17T15:32:57,378 copying build/lib/nnunetv2/dataset_conversion/datasets_for_integration_tests/__init__.py -> build/bdist.linux-armv7l/wheel/nnunetv2/dataset_conversion/datasets_for_integration_tests 2024-06-17T15:32:57,380 copying build/lib/nnunetv2/dataset_conversion/datasets_for_integration_tests/Dataset998_IntegrationTest_Hippocampus_ignore.py -> build/bdist.linux-armv7l/wheel/nnunetv2/dataset_conversion/datasets_for_integration_tests 2024-06-17T15:32:57,382 copying build/lib/nnunetv2/dataset_conversion/datasets_for_integration_tests/Dataset997_IntegrationTest_Hippocampus_regions.py -> build/bdist.linux-armv7l/wheel/nnunetv2/dataset_conversion/datasets_for_integration_tests 2024-06-17T15:32:57,384 copying build/lib/nnunetv2/dataset_conversion/Dataset073_Fluo_C3DH_A549_SIM.py -> build/bdist.linux-armv7l/wheel/nnunetv2/dataset_conversion 2024-06-17T15:32:57,386 copying build/lib/nnunetv2/dataset_conversion/convert_MSD_dataset.py -> build/bdist.linux-armv7l/wheel/nnunetv2/dataset_conversion 2024-06-17T15:32:57,388 copying build/lib/nnunetv2/dataset_conversion/Dataset988_dummyDataset4.py -> build/bdist.linux-armv7l/wheel/nnunetv2/dataset_conversion 2024-06-17T15:32:57,389 copying build/lib/nnunetv2/dataset_conversion/Dataset042_BraTS18.py -> build/bdist.linux-armv7l/wheel/nnunetv2/dataset_conversion 2024-06-17T15:32:57,391 copying build/lib/nnunetv2/dataset_conversion/Dataset223_AMOS2022postChallenge.py -> build/bdist.linux-armv7l/wheel/nnunetv2/dataset_conversion 2024-06-17T15:32:57,393 copying build/lib/nnunetv2/dataset_conversion/Dataset219_Amos2022_task2.py -> build/bdist.linux-armv7l/wheel/nnunetv2/dataset_conversion 2024-06-17T15:32:57,395 copying build/lib/nnunetv2/dataset_conversion/Dataset220_KiTS2023.py -> build/bdist.linux-armv7l/wheel/nnunetv2/dataset_conversion 2024-06-17T15:32:57,397 copying build/lib/nnunetv2/dataset_conversion/Dataset027_ACDC.py -> build/bdist.linux-armv7l/wheel/nnunetv2/dataset_conversion 2024-06-17T15:32:57,399 creating build/bdist.linux-armv7l/wheel/nnunetv2/run 2024-06-17T15:32:57,400 copying build/lib/nnunetv2/run/__init__.py -> build/bdist.linux-armv7l/wheel/nnunetv2/run 2024-06-17T15:32:57,402 copying build/lib/nnunetv2/run/run_training.py -> build/bdist.linux-armv7l/wheel/nnunetv2/run 2024-06-17T15:32:57,405 copying build/lib/nnunetv2/run/load_pretrained_weights.py -> build/bdist.linux-armv7l/wheel/nnunetv2/run 2024-06-17T15:32:57,407 creating build/bdist.linux-armv7l/wheel/nnunetv2/model_sharing 2024-06-17T15:32:57,408 copying build/lib/nnunetv2/model_sharing/model_import.py -> build/bdist.linux-armv7l/wheel/nnunetv2/model_sharing 2024-06-17T15:32:57,410 copying build/lib/nnunetv2/model_sharing/entry_points.py -> build/bdist.linux-armv7l/wheel/nnunetv2/model_sharing 2024-06-17T15:32:57,412 copying build/lib/nnunetv2/model_sharing/__init__.py -> build/bdist.linux-armv7l/wheel/nnunetv2/model_sharing 2024-06-17T15:32:57,413 copying build/lib/nnunetv2/model_sharing/model_export.py -> build/bdist.linux-armv7l/wheel/nnunetv2/model_sharing 2024-06-17T15:32:57,415 copying build/lib/nnunetv2/model_sharing/model_download.py -> build/bdist.linux-armv7l/wheel/nnunetv2/model_sharing 2024-06-17T15:32:57,417 copying build/lib/nnunetv2/__init__.py -> build/bdist.linux-armv7l/wheel/nnunetv2 2024-06-17T15:32:57,419 creating build/bdist.linux-armv7l/wheel/nnunetv2/inference 2024-06-17T15:32:57,420 copying build/lib/nnunetv2/inference/sliding_window_prediction.py -> build/bdist.linux-armv7l/wheel/nnunetv2/inference 2024-06-17T15:32:57,423 copying build/lib/nnunetv2/inference/JHU_inference.py -> build/bdist.linux-armv7l/wheel/nnunetv2/inference 2024-06-17T15:32:57,426 copying build/lib/nnunetv2/inference/data_iterators.py -> build/bdist.linux-armv7l/wheel/nnunetv2/inference 2024-06-17T15:32:57,428 copying build/lib/nnunetv2/inference/__init__.py -> build/bdist.linux-armv7l/wheel/nnunetv2/inference 2024-06-17T15:32:57,430 copying build/lib/nnunetv2/inference/examples.py -> build/bdist.linux-armv7l/wheel/nnunetv2/inference 2024-06-17T15:32:57,432 copying build/lib/nnunetv2/inference/predict_from_raw_data.py -> build/bdist.linux-armv7l/wheel/nnunetv2/inference 2024-06-17T15:32:57,435 copying build/lib/nnunetv2/inference/export_prediction.py -> build/bdist.linux-armv7l/wheel/nnunetv2/inference 2024-06-17T15:32:57,438 creating build/bdist.linux-armv7l/wheel/nnunetv2/preprocessing 2024-06-17T15:32:57,439 creating build/bdist.linux-armv7l/wheel/nnunetv2/preprocessing/preprocessors 2024-06-17T15:32:57,440 copying build/lib/nnunetv2/preprocessing/preprocessors/__init__.py -> build/bdist.linux-armv7l/wheel/nnunetv2/preprocessing/preprocessors 2024-06-17T15:32:57,442 copying build/lib/nnunetv2/preprocessing/preprocessors/default_preprocessor.py -> build/bdist.linux-armv7l/wheel/nnunetv2/preprocessing/preprocessors 2024-06-17T15:32:57,444 copying build/lib/nnunetv2/preprocessing/__init__.py -> build/bdist.linux-armv7l/wheel/nnunetv2/preprocessing 2024-06-17T15:32:57,446 creating build/bdist.linux-armv7l/wheel/nnunetv2/preprocessing/resampling 2024-06-17T15:32:57,447 copying build/lib/nnunetv2/preprocessing/resampling/utils.py -> build/bdist.linux-armv7l/wheel/nnunetv2/preprocessing/resampling 2024-06-17T15:32:57,449 copying build/lib/nnunetv2/preprocessing/resampling/default_resampling.py -> build/bdist.linux-armv7l/wheel/nnunetv2/preprocessing/resampling 2024-06-17T15:32:57,452 copying build/lib/nnunetv2/preprocessing/resampling/__init__.py -> build/bdist.linux-armv7l/wheel/nnunetv2/preprocessing/resampling 2024-06-17T15:32:57,453 copying build/lib/nnunetv2/preprocessing/resampling/resample_torch.py -> build/bdist.linux-armv7l/wheel/nnunetv2/preprocessing/resampling 2024-06-17T15:32:57,456 creating build/bdist.linux-armv7l/wheel/nnunetv2/preprocessing/normalization 2024-06-17T15:32:57,456 copying build/lib/nnunetv2/preprocessing/normalization/default_normalization_schemes.py -> build/bdist.linux-armv7l/wheel/nnunetv2/preprocessing/normalization 2024-06-17T15:32:57,459 copying build/lib/nnunetv2/preprocessing/normalization/__init__.py -> build/bdist.linux-armv7l/wheel/nnunetv2/preprocessing/normalization 2024-06-17T15:32:57,460 copying build/lib/nnunetv2/preprocessing/normalization/map_channel_name_to_normalization.py -> build/bdist.linux-armv7l/wheel/nnunetv2/preprocessing/normalization 2024-06-17T15:32:57,463 creating build/bdist.linux-armv7l/wheel/nnunetv2/preprocessing/cropping 2024-06-17T15:32:57,463 copying build/lib/nnunetv2/preprocessing/cropping/cropping.py -> build/bdist.linux-armv7l/wheel/nnunetv2/preprocessing/cropping 2024-06-17T15:32:57,466 copying build/lib/nnunetv2/preprocessing/cropping/__init__.py -> build/bdist.linux-armv7l/wheel/nnunetv2/preprocessing/cropping 2024-06-17T15:32:57,467 creating build/bdist.linux-armv7l/wheel/nnunetv2/tests 2024-06-17T15:32:57,468 copying build/lib/nnunetv2/tests/__init__.py -> build/bdist.linux-armv7l/wheel/nnunetv2/tests 2024-06-17T15:32:57,470 creating build/bdist.linux-armv7l/wheel/nnunetv2/tests/integration_tests 2024-06-17T15:32:57,471 copying build/lib/nnunetv2/tests/integration_tests/run_integration_test_bestconfig_inference.py -> build/bdist.linux-armv7l/wheel/nnunetv2/tests/integration_tests 2024-06-17T15:32:57,474 copying build/lib/nnunetv2/tests/integration_tests/add_lowres_and_cascade.py -> build/bdist.linux-armv7l/wheel/nnunetv2/tests/integration_tests 2024-06-17T15:32:57,475 copying build/lib/nnunetv2/tests/integration_tests/__init__.py -> build/bdist.linux-armv7l/wheel/nnunetv2/tests/integration_tests 2024-06-17T15:32:57,477 copying build/lib/nnunetv2/tests/integration_tests/cleanup_integration_test.py -> build/bdist.linux-armv7l/wheel/nnunetv2/tests/integration_tests 2024-06-17T15:32:57,479 copying build/lib/nnunetv2/paths.py -> build/bdist.linux-armv7l/wheel/nnunetv2 2024-06-17T15:32:57,481 creating build/bdist.linux-armv7l/wheel/nnunetv2/training 2024-06-17T15:32:57,483 creating build/bdist.linux-armv7l/wheel/nnunetv2/training/lr_scheduler 2024-06-17T15:32:57,484 copying build/lib/nnunetv2/training/lr_scheduler/__init__.py -> build/bdist.linux-armv7l/wheel/nnunetv2/training/lr_scheduler 2024-06-17T15:32:57,486 copying build/lib/nnunetv2/training/lr_scheduler/polylr.py -> build/bdist.linux-armv7l/wheel/nnunetv2/training/lr_scheduler 2024-06-17T15:32:57,488 creating build/bdist.linux-armv7l/wheel/nnunetv2/training/logging 2024-06-17T15:32:57,489 copying build/lib/nnunetv2/training/logging/__init__.py -> build/bdist.linux-armv7l/wheel/nnunetv2/training/logging 2024-06-17T15:32:57,490 copying build/lib/nnunetv2/training/logging/nnunet_logger.py -> build/bdist.linux-armv7l/wheel/nnunetv2/training/logging 2024-06-17T15:32:57,492 copying build/lib/nnunetv2/training/__init__.py -> build/bdist.linux-armv7l/wheel/nnunetv2/training 2024-06-17T15:32:57,494 creating build/bdist.linux-armv7l/wheel/nnunetv2/training/dataloading 2024-06-17T15:32:57,495 copying build/lib/nnunetv2/training/dataloading/base_data_loader.py -> build/bdist.linux-armv7l/wheel/nnunetv2/training/dataloading 2024-06-17T15:32:57,498 copying build/lib/nnunetv2/training/dataloading/utils.py -> build/bdist.linux-armv7l/wheel/nnunetv2/training/dataloading 2024-06-17T15:32:57,499 copying build/lib/nnunetv2/training/dataloading/data_loader_2d.py -> build/bdist.linux-armv7l/wheel/nnunetv2/training/dataloading 2024-06-17T15:32:57,502 copying build/lib/nnunetv2/training/dataloading/nnunet_dataset.py -> build/bdist.linux-armv7l/wheel/nnunetv2/training/dataloading 2024-06-17T15:32:57,504 copying build/lib/nnunetv2/training/dataloading/__init__.py -> build/bdist.linux-armv7l/wheel/nnunetv2/training/dataloading 2024-06-17T15:32:57,505 copying build/lib/nnunetv2/training/dataloading/data_loader_3d.py -> build/bdist.linux-armv7l/wheel/nnunetv2/training/dataloading 2024-06-17T15:32:57,508 creating build/bdist.linux-armv7l/wheel/nnunetv2/training/data_augmentation 2024-06-17T15:32:57,508 copying build/lib/nnunetv2/training/data_augmentation/compute_initial_patch_size.py -> build/bdist.linux-armv7l/wheel/nnunetv2/training/data_augmentation 2024-06-17T15:32:57,510 copying build/lib/nnunetv2/training/data_augmentation/__init__.py -> build/bdist.linux-armv7l/wheel/nnunetv2/training/data_augmentation 2024-06-17T15:32:57,512 creating build/bdist.linux-armv7l/wheel/nnunetv2/training/data_augmentation/custom_transforms 2024-06-17T15:32:57,513 copying build/lib/nnunetv2/training/data_augmentation/custom_transforms/cascade_transforms.py -> build/bdist.linux-armv7l/wheel/nnunetv2/training/data_augmentation/custom_transforms 2024-06-17T15:32:57,516 copying build/lib/nnunetv2/training/data_augmentation/custom_transforms/transforms_for_dummy_2d.py -> build/bdist.linux-armv7l/wheel/nnunetv2/training/data_augmentation/custom_transforms 2024-06-17T15:32:57,518 copying build/lib/nnunetv2/training/data_augmentation/custom_transforms/__init__.py -> build/bdist.linux-armv7l/wheel/nnunetv2/training/data_augmentation/custom_transforms 2024-06-17T15:32:57,519 copying build/lib/nnunetv2/training/data_augmentation/custom_transforms/masking.py -> build/bdist.linux-armv7l/wheel/nnunetv2/training/data_augmentation/custom_transforms 2024-06-17T15:32:57,521 copying build/lib/nnunetv2/training/data_augmentation/custom_transforms/deep_supervision_donwsampling.py -> build/bdist.linux-armv7l/wheel/nnunetv2/training/data_augmentation/custom_transforms 2024-06-17T15:32:57,523 copying build/lib/nnunetv2/training/data_augmentation/custom_transforms/region_based_training.py -> build/bdist.linux-armv7l/wheel/nnunetv2/training/data_augmentation/custom_transforms 2024-06-17T15:32:57,525 creating build/bdist.linux-armv7l/wheel/nnunetv2/training/loss 2024-06-17T15:32:57,526 copying build/lib/nnunetv2/training/loss/deep_supervision.py -> build/bdist.linux-armv7l/wheel/nnunetv2/training/loss 2024-06-17T15:32:57,528 copying build/lib/nnunetv2/training/loss/dice.py -> build/bdist.linux-armv7l/wheel/nnunetv2/training/loss 2024-06-17T15:32:57,531 copying build/lib/nnunetv2/training/loss/__init__.py -> build/bdist.linux-armv7l/wheel/nnunetv2/training/loss 2024-06-17T15:32:57,533 copying build/lib/nnunetv2/training/loss/robust_ce_loss.py -> build/bdist.linux-armv7l/wheel/nnunetv2/training/loss 2024-06-17T15:32:57,535 copying build/lib/nnunetv2/training/loss/compound_losses.py -> build/bdist.linux-armv7l/wheel/nnunetv2/training/loss 2024-06-17T15:32:57,538 creating build/bdist.linux-armv7l/wheel/nnunetv2/training/nnUNetTrainer 2024-06-17T15:32:57,539 copying build/lib/nnunetv2/training/nnUNetTrainer/__init__.py -> build/bdist.linux-armv7l/wheel/nnunetv2/training/nnUNetTrainer 2024-06-17T15:32:57,541 creating build/bdist.linux-armv7l/wheel/nnunetv2/training/nnUNetTrainer/variants 2024-06-17T15:32:57,542 creating build/bdist.linux-armv7l/wheel/nnunetv2/training/nnUNetTrainer/variants/sampling 2024-06-17T15:32:57,543 copying build/lib/nnunetv2/training/nnUNetTrainer/variants/sampling/nnUNetTrainer_probabilisticOversampling.py -> build/bdist.linux-armv7l/wheel/nnunetv2/training/nnUNetTrainer/variants/sampling 2024-06-17T15:32:57,545 copying build/lib/nnunetv2/training/nnUNetTrainer/variants/sampling/__init__.py -> build/bdist.linux-armv7l/wheel/nnunetv2/training/nnUNetTrainer/variants/sampling 2024-06-17T15:32:57,547 creating build/bdist.linux-armv7l/wheel/nnunetv2/training/nnUNetTrainer/variants/network_architecture 2024-06-17T15:32:57,548 copying build/lib/nnunetv2/training/nnUNetTrainer/variants/network_architecture/nnUNetTrainerNoDeepSupervision.py -> build/bdist.linux-armv7l/wheel/nnunetv2/training/nnUNetTrainer/variants/network_architecture 2024-06-17T15:32:57,551 copying build/lib/nnunetv2/training/nnUNetTrainer/variants/network_architecture/__init__.py -> build/bdist.linux-armv7l/wheel/nnunetv2/training/nnUNetTrainer/variants/network_architecture 2024-06-17T15:32:57,552 copying build/lib/nnunetv2/training/nnUNetTrainer/variants/network_architecture/nnUNetTrainerBN.py -> build/bdist.linux-armv7l/wheel/nnunetv2/training/nnUNetTrainer/variants/network_architecture 2024-06-17T15:32:57,554 copying build/lib/nnunetv2/training/nnUNetTrainer/variants/__init__.py -> build/bdist.linux-armv7l/wheel/nnunetv2/training/nnUNetTrainer/variants 2024-06-17T15:32:57,557 creating build/bdist.linux-armv7l/wheel/nnunetv2/training/nnUNetTrainer/variants/lr_schedule 2024-06-17T15:32:57,558 copying build/lib/nnunetv2/training/nnUNetTrainer/variants/lr_schedule/nnUNetTrainerCosAnneal.py -> build/bdist.linux-armv7l/wheel/nnunetv2/training/nnUNetTrainer/variants/lr_schedule 2024-06-17T15:32:57,560 copying build/lib/nnunetv2/training/nnUNetTrainer/variants/lr_schedule/__init__.py -> build/bdist.linux-armv7l/wheel/nnunetv2/training/nnUNetTrainer/variants/lr_schedule 2024-06-17T15:32:57,562 creating build/bdist.linux-armv7l/wheel/nnunetv2/training/nnUNetTrainer/variants/training_length 2024-06-17T15:32:57,563 copying build/lib/nnunetv2/training/nnUNetTrainer/variants/training_length/__init__.py -> build/bdist.linux-armv7l/wheel/nnunetv2/training/nnUNetTrainer/variants/training_length 2024-06-17T15:32:57,565 copying build/lib/nnunetv2/training/nnUNetTrainer/variants/training_length/nnUNetTrainer_Xepochs.py -> build/bdist.linux-armv7l/wheel/nnunetv2/training/nnUNetTrainer/variants/training_length 2024-06-17T15:32:57,567 copying build/lib/nnunetv2/training/nnUNetTrainer/variants/training_length/nnUNetTrainer_Xepochs_NoMirroring.py -> build/bdist.linux-armv7l/wheel/nnunetv2/training/nnUNetTrainer/variants/training_length 2024-06-17T15:32:57,570 creating build/bdist.linux-armv7l/wheel/nnunetv2/training/nnUNetTrainer/variants/benchmarking 2024-06-17T15:32:57,571 copying build/lib/nnunetv2/training/nnUNetTrainer/variants/benchmarking/nnUNetTrainerBenchmark_5epochs_noDataLoading.py -> build/bdist.linux-armv7l/wheel/nnunetv2/training/nnUNetTrainer/variants/benchmarking 2024-06-17T15:32:57,574 copying build/lib/nnunetv2/training/nnUNetTrainer/variants/benchmarking/__init__.py -> build/bdist.linux-armv7l/wheel/nnunetv2/training/nnUNetTrainer/variants/benchmarking 2024-06-17T15:32:57,575 copying build/lib/nnunetv2/training/nnUNetTrainer/variants/benchmarking/nnUNetTrainerBenchmark_5epochs.py -> build/bdist.linux-armv7l/wheel/nnunetv2/training/nnUNetTrainer/variants/benchmarking 2024-06-17T15:32:57,578 creating build/bdist.linux-armv7l/wheel/nnunetv2/training/nnUNetTrainer/variants/data_augmentation 2024-06-17T15:32:57,579 copying build/lib/nnunetv2/training/nnUNetTrainer/variants/data_augmentation/nnUNetTrainerNoMirroring.py -> build/bdist.linux-armv7l/wheel/nnunetv2/training/nnUNetTrainer/variants/data_augmentation 2024-06-17T15:32:57,581 copying build/lib/nnunetv2/training/nnUNetTrainer/variants/data_augmentation/nnUNetTrainerDA5.py -> build/bdist.linux-armv7l/wheel/nnunetv2/training/nnUNetTrainer/variants/data_augmentation 2024-06-17T15:32:57,584 copying build/lib/nnunetv2/training/nnUNetTrainer/variants/data_augmentation/nnUNetTrainerNoDA.py -> build/bdist.linux-armv7l/wheel/nnunetv2/training/nnUNetTrainer/variants/data_augmentation 2024-06-17T15:32:57,585 copying build/lib/nnunetv2/training/nnUNetTrainer/variants/data_augmentation/__init__.py -> build/bdist.linux-armv7l/wheel/nnunetv2/training/nnUNetTrainer/variants/data_augmentation 2024-06-17T15:32:57,587 copying build/lib/nnunetv2/training/nnUNetTrainer/variants/data_augmentation/nnUNetTrainerDAOrd0.py -> build/bdist.linux-armv7l/wheel/nnunetv2/training/nnUNetTrainer/variants/data_augmentation 2024-06-17T15:32:57,590 creating build/bdist.linux-armv7l/wheel/nnunetv2/training/nnUNetTrainer/variants/loss 2024-06-17T15:32:57,591 copying build/lib/nnunetv2/training/nnUNetTrainer/variants/loss/nnUNetTrainerCELoss.py -> build/bdist.linux-armv7l/wheel/nnunetv2/training/nnUNetTrainer/variants/loss 2024-06-17T15:32:57,593 copying build/lib/nnunetv2/training/nnUNetTrainer/variants/loss/__init__.py -> build/bdist.linux-armv7l/wheel/nnunetv2/training/nnUNetTrainer/variants/loss 2024-06-17T15:32:57,594 copying build/lib/nnunetv2/training/nnUNetTrainer/variants/loss/nnUNetTrainerDiceLoss.py -> build/bdist.linux-armv7l/wheel/nnunetv2/training/nnUNetTrainer/variants/loss 2024-06-17T15:32:57,597 copying build/lib/nnunetv2/training/nnUNetTrainer/variants/loss/nnUNetTrainerTopkLoss.py -> build/bdist.linux-armv7l/wheel/nnunetv2/training/nnUNetTrainer/variants/loss 2024-06-17T15:32:57,599 creating build/bdist.linux-armv7l/wheel/nnunetv2/training/nnUNetTrainer/variants/custom 2024-06-17T15:32:57,600 copying build/lib/nnunetv2/training/nnUNetTrainer/variants/custom/__init__.py -> build/bdist.linux-armv7l/wheel/nnunetv2/training/nnUNetTrainer/variants/custom 2024-06-17T15:32:57,601 copying build/lib/nnunetv2/training/nnUNetTrainer/variants/custom/customTrainersMOSAIC.py -> build/bdist.linux-armv7l/wheel/nnunetv2/training/nnUNetTrainer/variants/custom 2024-06-17T15:32:57,604 creating build/bdist.linux-armv7l/wheel/nnunetv2/training/nnUNetTrainer/variants/optimizer 2024-06-17T15:32:57,605 copying build/lib/nnunetv2/training/nnUNetTrainer/variants/optimizer/nnUNetTrainerAdan.py -> build/bdist.linux-armv7l/wheel/nnunetv2/training/nnUNetTrainer/variants/optimizer 2024-06-17T15:32:57,607 copying build/lib/nnunetv2/training/nnUNetTrainer/variants/optimizer/__init__.py -> build/bdist.linux-armv7l/wheel/nnunetv2/training/nnUNetTrainer/variants/optimizer 2024-06-17T15:32:57,609 copying build/lib/nnunetv2/training/nnUNetTrainer/variants/optimizer/nnUNetTrainerAdam.py -> build/bdist.linux-armv7l/wheel/nnunetv2/training/nnUNetTrainer/variants/optimizer 2024-06-17T15:32:57,611 copying build/lib/nnunetv2/training/nnUNetTrainer/nnUNetTrainer.py -> build/bdist.linux-armv7l/wheel/nnunetv2/training/nnUNetTrainer 2024-06-17T15:32:57,616 creating build/bdist.linux-armv7l/wheel/nnunetv2/batch_running 2024-06-17T15:32:57,617 copying build/lib/nnunetv2/batch_running/collect_results_custom_Decathlon_2d.py -> build/bdist.linux-armv7l/wheel/nnunetv2/batch_running 2024-06-17T15:32:57,619 copying build/lib/nnunetv2/batch_running/collect_results_custom_Decathlon.py -> build/bdist.linux-armv7l/wheel/nnunetv2/batch_running 2024-06-17T15:32:57,622 creating build/bdist.linux-armv7l/wheel/nnunetv2/batch_running/release_trainings 2024-06-17T15:32:57,623 copying build/lib/nnunetv2/batch_running/release_trainings/__init__.py -> build/bdist.linux-armv7l/wheel/nnunetv2/batch_running/release_trainings 2024-06-17T15:32:57,625 creating build/bdist.linux-armv7l/wheel/nnunetv2/batch_running/release_trainings/nnunetv2_v1 2024-06-17T15:32:57,627 copying build/lib/nnunetv2/batch_running/release_trainings/nnunetv2_v1/generate_lsf_commands.py -> build/bdist.linux-armv7l/wheel/nnunetv2/batch_running/release_trainings/nnunetv2_v1 2024-06-17T15:32:57,629 copying build/lib/nnunetv2/batch_running/release_trainings/nnunetv2_v1/collect_results.py -> build/bdist.linux-armv7l/wheel/nnunetv2/batch_running/release_trainings/nnunetv2_v1 2024-06-17T15:32:57,632 copying build/lib/nnunetv2/batch_running/release_trainings/nnunetv2_v1/__init__.py -> build/bdist.linux-armv7l/wheel/nnunetv2/batch_running/release_trainings/nnunetv2_v1 2024-06-17T15:32:57,633 copying build/lib/nnunetv2/batch_running/__init__.py -> build/bdist.linux-armv7l/wheel/nnunetv2/batch_running 2024-06-17T15:32:57,635 creating build/bdist.linux-armv7l/wheel/nnunetv2/batch_running/benchmarking 2024-06-17T15:32:57,636 copying build/lib/nnunetv2/batch_running/benchmarking/generate_benchmarking_commands.py -> build/bdist.linux-armv7l/wheel/nnunetv2/batch_running/benchmarking 2024-06-17T15:32:57,639 copying build/lib/nnunetv2/batch_running/benchmarking/__init__.py -> build/bdist.linux-armv7l/wheel/nnunetv2/batch_running/benchmarking 2024-06-17T15:32:57,641 copying build/lib/nnunetv2/batch_running/benchmarking/summarize_benchmark_results.py -> build/bdist.linux-armv7l/wheel/nnunetv2/batch_running/benchmarking 2024-06-17T15:32:57,643 copying build/lib/nnunetv2/batch_running/generate_lsf_runs_customDecathlon.py -> build/bdist.linux-armv7l/wheel/nnunetv2/batch_running 2024-06-17T15:32:57,646 creating build/bdist.linux-armv7l/wheel/nnunetv2/ensembling 2024-06-17T15:32:57,647 copying build/lib/nnunetv2/ensembling/ensemble.py -> build/bdist.linux-armv7l/wheel/nnunetv2/ensembling 2024-06-17T15:32:57,650 copying build/lib/nnunetv2/ensembling/__init__.py -> build/bdist.linux-armv7l/wheel/nnunetv2/ensembling 2024-06-17T15:32:57,652 creating build/bdist.linux-armv7l/wheel/documentation 2024-06-17T15:32:57,653 copying build/lib/documentation/__init__.py -> build/bdist.linux-armv7l/wheel/documentation 2024-06-17T15:32:57,656 running install_egg_info 2024-06-17T15:32:57,875 Copying nnunetv2_bm_custom.egg-info to build/bdist.linux-armv7l/wheel/nnunetv2_bm_custom-2.5-py3.11.egg-info 2024-06-17T15:32:57,889 running install_scripts 2024-06-17T15:32:57,912 creating build/bdist.linux-armv7l/wheel/nnunetv2_bm_custom-2.5.dist-info/WHEEL 2024-06-17T15:32:57,916 creating '/tmp/pip-wheel-iylrjis8/.tmp-fcktzr4p/nnunetv2_bm_custom-2.5-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2024-06-17T15:32:57,918 adding 'documentation/__init__.py' 2024-06-17T15:32:57,920 adding 'nnunetv2/__init__.py' 2024-06-17T15:32:57,921 adding 'nnunetv2/configuration.py' 2024-06-17T15:32:57,922 adding 'nnunetv2/paths.py' 2024-06-17T15:32:57,924 adding 'nnunetv2/batch_running/__init__.py' 2024-06-17T15:32:57,926 adding 'nnunetv2/batch_running/collect_results_custom_Decathlon.py' 2024-06-17T15:32:57,927 adding 'nnunetv2/batch_running/collect_results_custom_Decathlon_2d.py' 2024-06-17T15:32:57,929 adding 'nnunetv2/batch_running/generate_lsf_runs_customDecathlon.py' 2024-06-17T15:32:57,931 adding 'nnunetv2/batch_running/benchmarking/__init__.py' 2024-06-17T15:32:57,932 adding 'nnunetv2/batch_running/benchmarking/generate_benchmarking_commands.py' 2024-06-17T15:32:57,933 adding 'nnunetv2/batch_running/benchmarking/summarize_benchmark_results.py' 2024-06-17T15:32:57,936 adding 'nnunetv2/batch_running/release_trainings/__init__.py' 2024-06-17T15:32:57,938 adding 'nnunetv2/batch_running/release_trainings/nnunetv2_v1/__init__.py' 2024-06-17T15:32:57,940 adding 'nnunetv2/batch_running/release_trainings/nnunetv2_v1/collect_results.py' 2024-06-17T15:32:57,942 adding 'nnunetv2/batch_running/release_trainings/nnunetv2_v1/generate_lsf_commands.py' 2024-06-17T15:32:57,945 adding 'nnunetv2/dataset_conversion/Dataset027_ACDC.py' 2024-06-17T15:32:57,947 adding 'nnunetv2/dataset_conversion/Dataset042_BraTS18.py' 2024-06-17T15:32:57,949 adding 'nnunetv2/dataset_conversion/Dataset043_BraTS19.py' 2024-06-17T15:32:57,951 adding 'nnunetv2/dataset_conversion/Dataset073_Fluo_C3DH_A549_SIM.py' 2024-06-17T15:32:57,954 adding 'nnunetv2/dataset_conversion/Dataset114_MNMs.py' 2024-06-17T15:32:57,955 adding 'nnunetv2/dataset_conversion/Dataset115_EMIDEC.py' 2024-06-17T15:32:57,957 adding 'nnunetv2/dataset_conversion/Dataset120_RoadSegmentation.py' 2024-06-17T15:32:57,959 adding 'nnunetv2/dataset_conversion/Dataset137_BraTS21.py' 2024-06-17T15:32:57,961 adding 'nnunetv2/dataset_conversion/Dataset218_Amos2022_task1.py' 2024-06-17T15:32:57,963 adding 'nnunetv2/dataset_conversion/Dataset219_Amos2022_task2.py' 2024-06-17T15:32:57,964 adding 'nnunetv2/dataset_conversion/Dataset220_KiTS2023.py' 2024-06-17T15:32:57,966 adding 'nnunetv2/dataset_conversion/Dataset221_AutoPETII_2023.py' 2024-06-17T15:32:57,968 adding 'nnunetv2/dataset_conversion/Dataset223_AMOS2022postChallenge.py' 2024-06-17T15:32:57,970 adding 'nnunetv2/dataset_conversion/Dataset224_AbdomenAtlas1.0.py' 2024-06-17T15:32:57,971 adding 'nnunetv2/dataset_conversion/Dataset988_dummyDataset4.py' 2024-06-17T15:32:57,973 adding 'nnunetv2/dataset_conversion/__init__.py' 2024-06-17T15:32:57,975 adding 'nnunetv2/dataset_conversion/convert_MSD_dataset.py' 2024-06-17T15:32:57,977 adding 'nnunetv2/dataset_conversion/convert_raw_dataset_from_old_nnunet_format.py' 2024-06-17T15:32:57,979 adding 'nnunetv2/dataset_conversion/generate_dataset_json.py' 2024-06-17T15:32:57,982 adding 'nnunetv2/dataset_conversion/datasets_for_integration_tests/Dataset996_IntegrationTest_Hippocampus_regions_ignore.py' 2024-06-17T15:32:57,983 adding 'nnunetv2/dataset_conversion/datasets_for_integration_tests/Dataset997_IntegrationTest_Hippocampus_regions.py' 2024-06-17T15:32:57,985 adding 'nnunetv2/dataset_conversion/datasets_for_integration_tests/Dataset998_IntegrationTest_Hippocampus_ignore.py' 2024-06-17T15:32:57,986 adding 'nnunetv2/dataset_conversion/datasets_for_integration_tests/Dataset999_IntegrationTest_Hippocampus.py' 2024-06-17T15:32:57,988 adding 'nnunetv2/dataset_conversion/datasets_for_integration_tests/__init__.py' 2024-06-17T15:32:57,990 adding 'nnunetv2/ensembling/__init__.py' 2024-06-17T15:32:57,993 adding 'nnunetv2/ensembling/ensemble.py' 2024-06-17T15:32:57,995 adding 'nnunetv2/evaluation/__init__.py' 2024-06-17T15:32:57,997 adding 'nnunetv2/evaluation/accumulate_cv_results.py' 2024-06-17T15:32:58,000 adding 'nnunetv2/evaluation/evaluate_predictions.py' 2024-06-17T15:32:58,004 adding 'nnunetv2/evaluation/find_best_configuration.py' 2024-06-17T15:32:58,006 adding 'nnunetv2/experiment_planning/__init__.py' 2024-06-17T15:32:58,009 adding 'nnunetv2/experiment_planning/plan_and_preprocess_api.py' 2024-06-17T15:32:58,011 adding 'nnunetv2/experiment_planning/plan_and_preprocess_entrypoints.py' 2024-06-17T15:32:58,014 adding 'nnunetv2/experiment_planning/verify_dataset_integrity.py' 2024-06-17T15:32:58,017 adding 'nnunetv2/experiment_planning/dataset_fingerprint/__init__.py' 2024-06-17T15:32:58,019 adding 'nnunetv2/experiment_planning/dataset_fingerprint/fingerprint_extractor.py' 2024-06-17T15:32:58,022 adding 'nnunetv2/experiment_planning/experiment_planners/__init__.py' 2024-06-17T15:32:58,028 adding 'nnunetv2/experiment_planning/experiment_planners/default_experiment_planner.py' 2024-06-17T15:32:58,030 adding 'nnunetv2/experiment_planning/experiment_planners/network_topology.py' 2024-06-17T15:32:58,033 adding 'nnunetv2/experiment_planning/experiment_planners/resencUNet_planner.py' 2024-06-17T15:32:58,035 adding 'nnunetv2/experiment_planning/experiment_planners/resampling/__init__.py' 2024-06-17T15:32:58,037 adding 'nnunetv2/experiment_planning/experiment_planners/resampling/resample_with_torch.py' 2024-06-17T15:32:58,040 adding 'nnunetv2/experiment_planning/experiment_planners/residual_unets/__init__.py' 2024-06-17T15:32:58,042 adding 'nnunetv2/experiment_planning/experiment_planners/residual_unets/residual_encoder_unet_planners.py' 2024-06-17T15:32:58,044 adding 'nnunetv2/experiment_planning/plans_for_pretraining/__init__.py' 2024-06-17T15:32:58,046 adding 'nnunetv2/experiment_planning/plans_for_pretraining/move_plans_between_datasets.py' 2024-06-17T15:32:58,047 adding 'nnunetv2/imageio/__init__.py' 2024-06-17T15:32:58,049 adding 'nnunetv2/imageio/base_reader_writer.py' 2024-06-17T15:32:58,050 adding 'nnunetv2/imageio/natural_image_reader_writer.py' 2024-06-17T15:32:58,052 adding 'nnunetv2/imageio/nibabel_reader_writer.py' 2024-06-17T15:32:58,053 adding 'nnunetv2/imageio/reader_writer_registry.py' 2024-06-17T15:32:58,054 adding 'nnunetv2/imageio/simpleitk_reader_writer.py' 2024-06-17T15:32:58,056 adding 'nnunetv2/imageio/tif_reader_writer.py' 2024-06-17T15:32:58,058 adding 'nnunetv2/inference/JHU_inference.py' 2024-06-17T15:32:58,059 adding 'nnunetv2/inference/__init__.py' 2024-06-17T15:32:58,061 adding 'nnunetv2/inference/data_iterators.py' 2024-06-17T15:32:58,062 adding 'nnunetv2/inference/examples.py' 2024-06-17T15:32:58,064 adding 'nnunetv2/inference/export_prediction.py' 2024-06-17T15:32:58,069 adding 'nnunetv2/inference/predict_from_raw_data.py' 2024-06-17T15:32:58,071 adding 'nnunetv2/inference/sliding_window_prediction.py' 2024-06-17T15:32:58,073 adding 'nnunetv2/model_sharing/__init__.py' 2024-06-17T15:32:58,074 adding 'nnunetv2/model_sharing/entry_points.py' 2024-06-17T15:32:58,075 adding 'nnunetv2/model_sharing/model_download.py' 2024-06-17T15:32:58,077 adding 'nnunetv2/model_sharing/model_export.py' 2024-06-17T15:32:58,078 adding 'nnunetv2/model_sharing/model_import.py' 2024-06-17T15:32:58,079 adding 'nnunetv2/postprocessing/__init__.py' 2024-06-17T15:32:58,082 adding 'nnunetv2/postprocessing/remove_connected_components.py' 2024-06-17T15:32:58,084 adding 'nnunetv2/preprocessing/__init__.py' 2024-06-17T15:32:58,085 adding 'nnunetv2/preprocessing/cropping/__init__.py' 2024-06-17T15:32:58,086 adding 'nnunetv2/preprocessing/cropping/cropping.py' 2024-06-17T15:32:58,088 adding 'nnunetv2/preprocessing/normalization/__init__.py' 2024-06-17T15:32:58,090 adding 'nnunetv2/preprocessing/normalization/default_normalization_schemes.py' 2024-06-17T15:32:58,091 adding 'nnunetv2/preprocessing/normalization/map_channel_name_to_normalization.py' 2024-06-17T15:32:58,093 adding 'nnunetv2/preprocessing/preprocessors/__init__.py' 2024-06-17T15:32:58,095 adding 'nnunetv2/preprocessing/preprocessors/default_preprocessor.py' 2024-06-17T15:32:58,097 adding 'nnunetv2/preprocessing/resampling/__init__.py' 2024-06-17T15:32:58,099 adding 'nnunetv2/preprocessing/resampling/default_resampling.py' 2024-06-17T15:32:58,100 adding 'nnunetv2/preprocessing/resampling/resample_torch.py' 2024-06-17T15:32:58,102 adding 'nnunetv2/preprocessing/resampling/utils.py' 2024-06-17T15:32:58,103 adding 'nnunetv2/run/__init__.py' 2024-06-17T15:32:58,105 adding 'nnunetv2/run/load_pretrained_weights.py' 2024-06-17T15:32:58,107 adding 'nnunetv2/run/run_training.py' 2024-06-17T15:32:58,108 adding 'nnunetv2/tests/__init__.py' 2024-06-17T15:32:58,110 adding 'nnunetv2/tests/integration_tests/__init__.py' 2024-06-17T15:32:58,111 adding 'nnunetv2/tests/integration_tests/add_lowres_and_cascade.py' 2024-06-17T15:32:58,112 adding 'nnunetv2/tests/integration_tests/cleanup_integration_test.py' 2024-06-17T15:32:58,114 adding 'nnunetv2/tests/integration_tests/run_integration_test_bestconfig_inference.py' 2024-06-17T15:32:58,116 adding 'nnunetv2/training/__init__.py' 2024-06-17T15:32:58,117 adding 'nnunetv2/training/data_augmentation/__init__.py' 2024-06-17T15:32:58,119 adding 'nnunetv2/training/data_augmentation/compute_initial_patch_size.py' 2024-06-17T15:32:58,120 adding 'nnunetv2/training/data_augmentation/custom_transforms/__init__.py' 2024-06-17T15:32:58,122 adding 'nnunetv2/training/data_augmentation/custom_transforms/cascade_transforms.py' 2024-06-17T15:32:58,124 adding 'nnunetv2/training/data_augmentation/custom_transforms/deep_supervision_donwsampling.py' 2024-06-17T15:32:58,125 adding 'nnunetv2/training/data_augmentation/custom_transforms/masking.py' 2024-06-17T15:32:58,126 adding 'nnunetv2/training/data_augmentation/custom_transforms/region_based_training.py' 2024-06-17T15:32:58,127 adding 'nnunetv2/training/data_augmentation/custom_transforms/transforms_for_dummy_2d.py' 2024-06-17T15:32:58,129 adding 'nnunetv2/training/dataloading/__init__.py' 2024-06-17T15:32:58,130 adding 'nnunetv2/training/dataloading/base_data_loader.py' 2024-06-17T15:32:58,132 adding 'nnunetv2/training/dataloading/data_loader_2d.py' 2024-06-17T15:32:58,134 adding 'nnunetv2/training/dataloading/data_loader_3d.py' 2024-06-17T15:32:58,135 adding 'nnunetv2/training/dataloading/nnunet_dataset.py' 2024-06-17T15:32:58,136 adding 'nnunetv2/training/dataloading/utils.py' 2024-06-17T15:32:58,138 adding 'nnunetv2/training/logging/__init__.py' 2024-06-17T15:32:58,140 adding 'nnunetv2/training/logging/nnunet_logger.py' 2024-06-17T15:32:58,141 adding 'nnunetv2/training/loss/__init__.py' 2024-06-17T15:32:58,143 adding 'nnunetv2/training/loss/compound_losses.py' 2024-06-17T15:32:58,144 adding 'nnunetv2/training/loss/deep_supervision.py' 2024-06-17T15:32:58,145 adding 'nnunetv2/training/loss/dice.py' 2024-06-17T15:32:58,147 adding 'nnunetv2/training/loss/robust_ce_loss.py' 2024-06-17T15:32:58,148 adding 'nnunetv2/training/lr_scheduler/__init__.py' 2024-06-17T15:32:58,150 adding 'nnunetv2/training/lr_scheduler/polylr.py' 2024-06-17T15:32:58,151 adding 'nnunetv2/training/nnUNetTrainer/__init__.py' 2024-06-17T15:32:58,159 adding 'nnunetv2/training/nnUNetTrainer/nnUNetTrainer.py' 2024-06-17T15:32:58,161 adding 'nnunetv2/training/nnUNetTrainer/variants/__init__.py' 2024-06-17T15:32:58,163 adding 'nnunetv2/training/nnUNetTrainer/variants/benchmarking/__init__.py' 2024-06-17T15:32:58,164 adding 'nnunetv2/training/nnUNetTrainer/variants/benchmarking/nnUNetTrainerBenchmark_5epochs.py' 2024-06-17T15:32:58,166 adding 'nnunetv2/training/nnUNetTrainer/variants/benchmarking/nnUNetTrainerBenchmark_5epochs_noDataLoading.py' 2024-06-17T15:32:58,167 adding 'nnunetv2/training/nnUNetTrainer/variants/custom/__init__.py' 2024-06-17T15:32:58,169 adding 'nnunetv2/training/nnUNetTrainer/variants/custom/customTrainersMOSAIC.py' 2024-06-17T15:32:58,170 adding 'nnunetv2/training/nnUNetTrainer/variants/data_augmentation/__init__.py' 2024-06-17T15:32:58,173 adding 'nnunetv2/training/nnUNetTrainer/variants/data_augmentation/nnUNetTrainerDA5.py' 2024-06-17T15:32:58,175 adding 'nnunetv2/training/nnUNetTrainer/variants/data_augmentation/nnUNetTrainerDAOrd0.py' 2024-06-17T15:32:58,177 adding 'nnunetv2/training/nnUNetTrainer/variants/data_augmentation/nnUNetTrainerNoDA.py' 2024-06-17T15:32:58,178 adding 'nnunetv2/training/nnUNetTrainer/variants/data_augmentation/nnUNetTrainerNoMirroring.py' 2024-06-17T15:32:58,180 adding 'nnunetv2/training/nnUNetTrainer/variants/loss/__init__.py' 2024-06-17T15:32:58,181 adding 'nnunetv2/training/nnUNetTrainer/variants/loss/nnUNetTrainerCELoss.py' 2024-06-17T15:32:58,183 adding 'nnunetv2/training/nnUNetTrainer/variants/loss/nnUNetTrainerDiceLoss.py' 2024-06-17T15:32:58,184 adding 'nnunetv2/training/nnUNetTrainer/variants/loss/nnUNetTrainerTopkLoss.py' 2024-06-17T15:32:58,186 adding 'nnunetv2/training/nnUNetTrainer/variants/lr_schedule/__init__.py' 2024-06-17T15:32:58,187 adding 'nnunetv2/training/nnUNetTrainer/variants/lr_schedule/nnUNetTrainerCosAnneal.py' 2024-06-17T15:32:58,188 adding 'nnunetv2/training/nnUNetTrainer/variants/network_architecture/__init__.py' 2024-06-17T15:32:58,190 adding 'nnunetv2/training/nnUNetTrainer/variants/network_architecture/nnUNetTrainerBN.py' 2024-06-17T15:32:58,191 adding 'nnunetv2/training/nnUNetTrainer/variants/network_architecture/nnUNetTrainerNoDeepSupervision.py' 2024-06-17T15:32:58,193 adding 'nnunetv2/training/nnUNetTrainer/variants/optimizer/__init__.py' 2024-06-17T15:32:58,194 adding 'nnunetv2/training/nnUNetTrainer/variants/optimizer/nnUNetTrainerAdam.py' 2024-06-17T15:32:58,195 adding 'nnunetv2/training/nnUNetTrainer/variants/optimizer/nnUNetTrainerAdan.py' 2024-06-17T15:32:58,197 adding 'nnunetv2/training/nnUNetTrainer/variants/sampling/__init__.py' 2024-06-17T15:32:58,198 adding 'nnunetv2/training/nnUNetTrainer/variants/sampling/nnUNetTrainer_probabilisticOversampling.py' 2024-06-17T15:32:58,200 adding 'nnunetv2/training/nnUNetTrainer/variants/training_length/__init__.py' 2024-06-17T15:32:58,201 adding 'nnunetv2/training/nnUNetTrainer/variants/training_length/nnUNetTrainer_Xepochs.py' 2024-06-17T15:32:58,202 adding 'nnunetv2/training/nnUNetTrainer/variants/training_length/nnUNetTrainer_Xepochs_NoMirroring.py' 2024-06-17T15:32:58,203 adding 'nnunetv2/utilities/__init__.py' 2024-06-17T15:32:58,205 adding 'nnunetv2/utilities/collate_outputs.py' 2024-06-17T15:32:58,206 adding 'nnunetv2/utilities/crossval_split.py' 2024-06-17T15:32:58,207 adding 'nnunetv2/utilities/dataset_name_id_conversion.py' 2024-06-17T15:32:58,208 adding 'nnunetv2/utilities/ddp_allgather.py' 2024-06-17T15:32:58,210 adding 'nnunetv2/utilities/default_n_proc_DA.py' 2024-06-17T15:32:58,211 adding 'nnunetv2/utilities/file_path_utilities.py' 2024-06-17T15:32:58,213 adding 'nnunetv2/utilities/find_class_by_name.py' 2024-06-17T15:32:58,214 adding 'nnunetv2/utilities/get_network_from_plans.py' 2024-06-17T15:32:58,215 adding 'nnunetv2/utilities/helpers.py' 2024-06-17T15:32:58,216 adding 'nnunetv2/utilities/json_export.py' 2024-06-17T15:32:58,217 adding 'nnunetv2/utilities/network_initialization.py' 2024-06-17T15:32:58,219 adding 'nnunetv2/utilities/overlay_plots.py' 2024-06-17T15:32:58,221 adding 'nnunetv2/utilities/utils.py' 2024-06-17T15:32:58,222 adding 'nnunetv2/utilities/label_handling/__init__.py' 2024-06-17T15:32:58,224 adding 'nnunetv2/utilities/label_handling/label_handling.py' 2024-06-17T15:32:58,226 adding 'nnunetv2/utilities/plans_handling/__init__.py' 2024-06-17T15:32:58,228 adding 'nnunetv2/utilities/plans_handling/plans_handler.py' 2024-06-17T15:32:58,231 adding 'nnunetv2_bm_custom-2.5.dist-info/LICENSE' 2024-06-17T15:32:58,234 adding 'nnunetv2_bm_custom-2.5.dist-info/METADATA' 2024-06-17T15:32:58,235 adding 'nnunetv2_bm_custom-2.5.dist-info/WHEEL' 2024-06-17T15:32:58,236 adding 'nnunetv2_bm_custom-2.5.dist-info/entry_points.txt' 2024-06-17T15:32:58,237 adding 'nnunetv2_bm_custom-2.5.dist-info/top_level.txt' 2024-06-17T15:32:58,240 adding 'nnunetv2_bm_custom-2.5.dist-info/RECORD' 2024-06-17T15:32:58,247 removing build/bdist.linux-armv7l/wheel 2024-06-17T15:32:58,430 Building wheel for nnunetv2-bm-custom (pyproject.toml): finished with status 'done' 2024-06-17T15:32:58,440 Created wheel for nnunetv2-bm-custom: filename=nnunetv2_bm_custom-2.5-py3-none-any.whl size=261267 sha256=5aa2678488762dc6e106f5926ac8a1822d4c6d4c506bbfb3cd0554cbfe61ae6a 2024-06-17T15:32:58,442 Stored in directory: /tmp/pip-ephem-wheel-cache-43jz18z0/wheels/08/ed/8b/6a862f44b471f619a0cbd32be9575f33b12f43b04d99edd915 2024-06-17T15:32:58,465 Successfully built nnunetv2-bm-custom 2024-06-17T15:32:58,475 Removed build tracker: '/tmp/pip-build-tracker-pgv8rzc_'