2024-06-17T15:44:10,870 Created temporary directory: /tmp/pip-build-tracker-d12q7u5s
2024-06-17T15:44:10,871 Initialized build tracking at /tmp/pip-build-tracker-d12q7u5s
2024-06-17T15:44:10,872 Created build tracker: /tmp/pip-build-tracker-d12q7u5s
2024-06-17T15:44:10,873 Entered build tracker: /tmp/pip-build-tracker-d12q7u5s
2024-06-17T15:44:10,874 Created temporary directory: /tmp/pip-wheel-hzlkdb1s
2024-06-17T15:44:10,877 Created temporary directory: /tmp/pip-ephem-wheel-cache-f5l6uzrn
2024-06-17T15:44:10,899 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2024-06-17T15:44:10,903 2 location(s) to search for versions of moleculekit:
2024-06-17T15:44:10,903 * https://pypi.org/simple/moleculekit/
2024-06-17T15:44:10,903 * https://www.piwheels.org/simple/moleculekit/
2024-06-17T15:44:10,904 Fetching project page and analyzing links: https://pypi.org/simple/moleculekit/
2024-06-17T15:44:10,904 Getting page https://pypi.org/simple/moleculekit/
2024-06-17T15:44:10,906 Found index url https://pypi.org/simple/
2024-06-17T15:44:11,139 Fetched page https://pypi.org/simple/moleculekit/ as application/vnd.pypi.simple.v1+json
2024-06-17T15:44:11,181   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/91/e6/25b6853357dfef8a4026325e420d8213d34c17c078a2f13b60cbb6213ea3/moleculekit-0.1.4-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-06-17T15:44:11,182   Found link https://files.pythonhosted.org/packages/13/0f/a200e8e7632d3a521cfc7c15fa4d0270802efce40f98ac5a5cae58385b7e/moleculekit-0.1.4.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.4
2024-06-17T15:44:11,183   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/9f/a5/eac32fcb2e9ff0d30298aa4cec8e152c95d675c4dd1a1a5d7676986d4d75/moleculekit-0.1.5-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-06-17T15:44:11,183   Found link https://files.pythonhosted.org/packages/c5/6f/ae7d1b8513eb23ec0fa8e153c42fda0ee96f9e29c6e4808c5ff78c115e89/moleculekit-0.1.5.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.5
2024-06-17T15:44:11,184   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/e2/51/0f4e4b95d0d5c16664ede7f2cd31e6d6003e9c940a8fbe28c74de91de627/moleculekit-0.1.6-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-06-17T15:44:11,185   Found link https://files.pythonhosted.org/packages/08/fa/bc1b5918a1715901fd0ea1e796de9e6647276943983962616f2ddceb1c3b/moleculekit-0.1.6.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.6
2024-06-17T15:44:11,186   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/49/59/ddf780e7a574dde727d5db8b93c41bcc3d19436a8ae9f468bad5ea48529e/moleculekit-0.1.7-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-06-17T15:44:11,186   Found link https://files.pythonhosted.org/packages/c7/cb/d1b609de2d59d10a60ca74c9d1a044534f608e323dc16a87e5bd77ee0eb0/moleculekit-0.1.7.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.7
2024-06-17T15:44:11,187   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/5b/a4/59e6017c4e5b99be72d8e0eb6b6442061f338e309d91c25d607162298d11/moleculekit-0.1.8-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-06-17T15:44:11,188   Found link https://files.pythonhosted.org/packages/c0/1d/753c7461942457e39fb069504cdc381518a4ef18f486de0a42572236095e/moleculekit-0.1.8.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.8
2024-06-17T15:44:11,189   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/28/39/e4219020234475a17077f38ebcbdff236872d8e3a0455b376edb847f4141/moleculekit-0.1.9-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-06-17T15:44:11,189   Found link https://files.pythonhosted.org/packages/e0/c6/5d47b6257a3d1aca76d635d1dc8fffd6ed712fbe324bfeb2f2da47edda09/moleculekit-0.1.9.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.9
2024-06-17T15:44:11,190   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/3c/12/42a0a156c8a51b2ef9de7c720cbcd226c1b0a7d13dce7dcdd4c34480e05f/moleculekit-0.1.12-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-06-17T15:44:11,192   Found link https://files.pythonhosted.org/packages/12/9d/ef12aeb7165210a6d06f5a735640db6c49cda2597bebb3584e72f7a2aee5/moleculekit-0.1.12.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.12
2024-06-17T15:44:11,192   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/e0/de/ddea29e806547e8743801bd5b44f5f4b62e96a3b6aa1b59e7ae3c183e65d/moleculekit-0.1.14-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-06-17T15:44:11,193   Found link https://files.pythonhosted.org/packages/0f/b8/5dce8ade2a03ba18558275d58f1f586fc78b76442ca923e02e05b7aa4638/moleculekit-0.1.14.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.14
2024-06-17T15:44:11,193   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/98/67/c911fd0aab052ed8866739c282be96070bcafee75cad331165f356d0bf11/moleculekit-0.1.15-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-06-17T15:44:11,194   Found link https://files.pythonhosted.org/packages/be/5c/b803aa60ac93136e6fce9ab52ec50aec246481c5db76892780152f769d75/moleculekit-0.1.15.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.15
2024-06-17T15:44:11,195   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/4f/30/78d34f8541a5e0e7488b6d59c43b29cf4d9f42467553fb0cee41312409c7/moleculekit-0.1.16-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-06-17T15:44:11,195   Found link https://files.pythonhosted.org/packages/d3/39/0774efc740b7e6a6969e084e0eb126483049a60229de80cc09a1a4b78011/moleculekit-0.1.16.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.16
2024-06-17T15:44:11,196   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/ca/d8/f9dd491ee5984f59dbd1206bb41062543e1a1664bb002d4b2675ec3f882c/moleculekit-0.1.17-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-06-17T15:44:11,197   Found link https://files.pythonhosted.org/packages/f6/27/b820e1158e448f35830265eeb023ec7d7cc72272136a31ec5365a893174f/moleculekit-0.1.17.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.17
2024-06-17T15:44:11,197   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/0d/df/1d0dfd734e1d67c6ba1a1291b6f530c60eb3a65c25e2990d0fb62c73dbea/moleculekit-0.1.19-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-06-17T15:44:11,198   Found link https://files.pythonhosted.org/packages/6e/55/28d041ad7324e063e00ed2e0a5cd91d4c67e6cda3e62c24ab9c3ea2ad5dc/moleculekit-0.1.19.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.19
2024-06-17T15:44:11,199   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/f0/f3/18f3b015e5fdf04c0243d63132d4d29ab807b608bda9cab6de505c060196/moleculekit-0.1.21-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-06-17T15:44:11,199   Found link https://files.pythonhosted.org/packages/d7/2f/510d466d4e507523c6f8bb5323a03351e0a9e6422b29ab7a9d7b34101484/moleculekit-0.1.21.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.21
2024-06-17T15:44:11,200   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/2c/83/5bdc26bbc9c0dc6b7fa54260134f5545c6f8c01e50b4cc94de02d0a2f295/moleculekit-0.1.22-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-06-17T15:44:11,200   Found link https://files.pythonhosted.org/packages/28/80/3c053d293b0aad5df512b8c7bf1ef111c621ee80bbe08ea83763ca004a85/moleculekit-0.1.22.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.22
2024-06-17T15:44:11,201   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/5d/ec/9e6438a424607cba93fe71b89ef89dbff35369f133ed76ded895861ab290/moleculekit-0.1.23-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-06-17T15:44:11,202   Found link https://files.pythonhosted.org/packages/6d/c3/680633af7541d2c7ecf2fde4dc9661f107efaf55688d3f41d15407cb2248/moleculekit-0.1.23.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.23
2024-06-17T15:44:11,203   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/0b/02/f2bbd133b7e76a60bdc1d92d10621ce9f60f8eeaf97ed7dacae2e216cb2b/moleculekit-0.1.24-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-06-17T15:44:11,203   Found link https://files.pythonhosted.org/packages/7f/f7/48b8b09fbf6e368925a186ef4cb874ae0abfae6d5b81bd2656502290add5/moleculekit-0.1.24.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.24
2024-06-17T15:44:11,204   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/1e/bd/24146e575547d1fc8bd24b4b7d9a57cbe14c357ebf85d638df6421412465/moleculekit-0.1.26-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-06-17T15:44:11,205   Found link https://files.pythonhosted.org/packages/f5/6e/a9dafd4b3b109011d156a6f7c726925669e42435b6049859f3a0a050a87f/moleculekit-0.1.26.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.26
2024-06-17T15:44:11,205   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/fe/63/a0e65b18866805186e3a4ba2b8ece20b73b85ec1ce6b3f8597e0c2508178/moleculekit-0.1.27-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-06-17T15:44:11,206   Found link https://files.pythonhosted.org/packages/70/7e/a01a54d9e88eaf00ec47989f360fb98d58e871d500aa28c44b9c7b8bd7ff/moleculekit-0.1.27.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.27
2024-06-17T15:44:11,206   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/f1/db/8f0879b07acae5356393297640e1116c459d28b59d19e1bd328da94e4b7a/moleculekit-0.1.29-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-06-17T15:44:11,207   Found link https://files.pythonhosted.org/packages/dc/10/67c6720423554f257425330caf21342c13c59bc86aee634f369b481dad7b/moleculekit-0.1.29.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.29
2024-06-17T15:44:11,207   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/83/f1/2cb963c0a74d919761e8516fe969330c122c9874426ff8eef7834b9b0c62/moleculekit-0.1.30-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-06-17T15:44:11,208   Found link https://files.pythonhosted.org/packages/a9/87/cd070158b979d89c02edf2a1deb98ced11e6a442952ed67ebb4f281d6700/moleculekit-0.1.30.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.30
2024-06-17T15:44:11,209   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/cf/c4/f211cc80e281f1ee01040cfa490a65e874a54b5bedf2dfd73e3be6e72d93/moleculekit-0.1.31-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-06-17T15:44:11,209   Found link https://files.pythonhosted.org/packages/d7/8b/2b012f3371e5fceb875601e16c83a0ddfd5602d1cdceb953a4b36fc12200/moleculekit-0.1.31.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.31
2024-06-17T15:44:11,210   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/bf/2e/56178883cad4d2429d5cb5fb23d17be42663dea6da428df98f2b70be67a3/moleculekit-0.1.32-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-06-17T15:44:11,211   Found link https://files.pythonhosted.org/packages/97/34/992324fd9f1bb4d151b3383f601e3b69810e62c9d3530580ae8b43c4dcca/moleculekit-0.1.32.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.32
2024-06-17T15:44:11,211   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/7e/84/8e678afbcbd29c9b462973571bf3a043a7b5dbf7a98f1ac3dc82c3f5fc91/moleculekit-0.2.0-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-06-17T15:44:11,212   Found link https://files.pythonhosted.org/packages/10/f8/dfc9b84d16081239c0b6e3a2896e59db9f8b8617a67b7585e98789942324/moleculekit-0.2.0.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.0
2024-06-17T15:44:11,213   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/cb/a7/e706e1daa9d60d9ca9a96436564ec0612fe5fc850fdabad6e0c5174d52c5/moleculekit-0.2.1-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-06-17T15:44:11,214   Found link https://files.pythonhosted.org/packages/a8/ad/3c01c094324fcaf3a516aa3ab376ae4bec251dc2005f172217368e97b1db/moleculekit-0.2.1.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.1
2024-06-17T15:44:11,214   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/30/c3/e618404cdeb463f4f5f8fbfa1d5d45a81ea3c31cef86e9c6ca14a3d64589/moleculekit-0.2.2-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-06-17T15:44:11,215   Found link https://files.pythonhosted.org/packages/ce/2a/e4f0ea22c4e3be055409fbe8cda7802bd2cd1095926f62f2c78b7f447b46/moleculekit-0.2.2.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.2
2024-06-17T15:44:11,215   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/3c/c6/baf4c6dafa42a7f055cd29cad8a79b2e99baaf474e8ddcff833e02a8c9a2/moleculekit-0.2.3-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-06-17T15:44:11,216   Found link https://files.pythonhosted.org/packages/92/3b/d42fa900fbc359ad0b7806344c2eb303f06336fc6bad439db5550483ce5c/moleculekit-0.2.3.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.3
2024-06-17T15:44:11,217   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/d7/72/5674ef2a697583774eb66559f23b37026098badcc7e14bb09247c112baec/moleculekit-0.2.4-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-06-17T15:44:11,217   Found link https://files.pythonhosted.org/packages/7c/f3/5372063ddc10f57f1ea1aa29ab3f06d98d3d29c22d2a3d0c7c318ff7dc4a/moleculekit-0.2.4.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.4
2024-06-17T15:44:11,218   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/35/99/9bc21e28d9d4007623055b30fc43d18464649dfa39703ea80e9c32ba4607/moleculekit-0.2.5-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-06-17T15:44:11,219   Found link https://files.pythonhosted.org/packages/dd/7a/f6d8ac771d9e4c9117ab098a281231e6c4c3fadbbeafce69ac5b8370f2bd/moleculekit-0.2.5.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.5
2024-06-17T15:44:11,219   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/97/2d/1b5aeecf49f225f13c39534c7a93181f14bbb295f4b0bb50019d7efda717/moleculekit-0.2.6-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-06-17T15:44:11,220   Found link https://files.pythonhosted.org/packages/8a/04/f032c25621eac9ccab21dd25c0cb5d7150a21a5b0cde5ae21adb3e2be933/moleculekit-0.2.6.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.6
2024-06-17T15:44:11,221   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/7b/c3/6023b75cb8d60607d1932a6f3fa1fee5c99e88b692f25e3ed0072a4812a5/moleculekit-0.2.7-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-06-17T15:44:11,221   Found link https://files.pythonhosted.org/packages/a6/68/1eb4fb904763839ec4df4eab490702bd7245a6848ebfb693b165d5fbb153/moleculekit-0.2.7.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.7
2024-06-17T15:44:11,222   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/a3/85/452591c89b66659eaf24e216aef7818e3061a78bb1fc832f8616808949d4/moleculekit-0.2.8-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-06-17T15:44:11,223   Found link https://files.pythonhosted.org/packages/68/e0/0fe1302790061ea9e59370a988d67b877642c45a9e6d725819118cc3aae1/moleculekit-0.2.8.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.8
2024-06-17T15:44:11,224   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/90/90/238209bf8023d0779c0d4a9592786cc94e69d3dde60b5b17473d57c97b60/moleculekit-0.2.9-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-06-17T15:44:11,224   Found link https://files.pythonhosted.org/packages/bd/ad/aa7f2c7343506e17f61f2c4223dc912d4f099fdcc3e1736f393c9c31e118/moleculekit-0.2.9.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.9
2024-06-17T15:44:11,225   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/40/39/e7c3ea68289cf49ac58a53a55de11c71471a26c55268ce2a11dd3d0f4b1d/moleculekit-0.3.0-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-06-17T15:44:11,225   Found link https://files.pythonhosted.org/packages/9d/1e/99ffa0d73766a735c3e91d591c92537e37b0024cd9b1d745c4e5933563c1/moleculekit-0.3.0.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.3.0
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2024-06-17T15:44:11,272   Found link https://files.pythonhosted.org/packages/5c/b2/944d529319db190e13234dd2337bff23b7a7c3c1a98b2a95eb08fc802530/moleculekit-0.9.7.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.9.7
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2024-06-17T15:44:11,273   Found link https://files.pythonhosted.org/packages/15/e0/93b4cc5e997a9e4e01fd39f00548f04e3f068961abba30f82fc04aa828ac/moleculekit-0.9.9.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.9.9
2024-06-17T15:44:11,274   Found link https://files.pythonhosted.org/packages/7f/58/2f04c5387c3c23e5c46f71741f7655c380b01c6f88aad7b5e945943c3fd1/moleculekit-0.9.12.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.9.12
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2024-06-17T15:44:11,276   Found link https://files.pythonhosted.org/packages/8e/f7/39a1290893da55d759e629ea6d9e2509fe6c3a06538d3f80cca590859647/moleculekit-0.9.14.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.9.14
2024-06-17T15:44:11,276   Found link https://files.pythonhosted.org/packages/02/6e/108b002ecb68c789d690492a02ced311cea625fdd642348e5cd75bd25fdb/moleculekit-0.9.15.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.9.15
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2024-06-17T15:44:11,283   Found link https://files.pythonhosted.org/packages/61/45/acbe2272378c87f0796b1ebcba0673a13acc5ed87eb0d29fa16e1bfe54cf/moleculekit-1.0.8.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.0.8
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2024-06-17T15:44:11,284   Found link https://files.pythonhosted.org/packages/09/29/7e58bdf57dda487be8ab4c3719ebbf31db17ad65232fc9305a20eaa3c90c/moleculekit-1.1.0.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.1.0
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2024-06-17T15:44:11,287   Found link https://files.pythonhosted.org/packages/f4/53/156ee257b5781f55228ef884eec2b57cc368dbf37c4654315347af0e7a71/moleculekit-1.1.6.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.1.6
2024-06-17T15:44:11,288   Found link https://files.pythonhosted.org/packages/71/3c/15df00803c890b9d17390a31c60fa2c070a88e8a8c33c79ef10ddf023159/moleculekit-1.1.7.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.1.7
2024-06-17T15:44:11,289   Found link https://files.pythonhosted.org/packages/eb/2e/c50f42aefc5f3510073bd5059723baff738a5ee171174441586000c444dc/moleculekit-1.1.8.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.1.8
2024-06-17T15:44:11,290   Found link https://files.pythonhosted.org/packages/59/b9/6e9913fc67fa6321d5c441eb59a93e257f1fba383848a6bd645a7d427045/moleculekit-1.1.9.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.1.9
2024-06-17T15:44:11,290   Found link https://files.pythonhosted.org/packages/06/90/69685dad023515e231d8da7747793f33c497bb62496c4075e518f230da55/moleculekit-1.2.0.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.2.0
2024-06-17T15:44:11,291   Found link https://files.pythonhosted.org/packages/1a/07/36426e9820ea0ecff884e15fc9ebe413735a2b22a9212cdcbb9b62e56744/moleculekit-1.2.1.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.2.1
2024-06-17T15:44:11,292   Found link https://files.pythonhosted.org/packages/a1/56/2e1ac2fac4f566abf327baf326d17421047e363138c1c132a537a3eaf5ec/moleculekit-1.2.2.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.2.2
2024-06-17T15:44:11,293   Found link https://files.pythonhosted.org/packages/cb/28/b8fa8b94edf207d206627fcb18753ce3fad1450d7d5e5b052daa211b226b/moleculekit-1.2.4.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.2.4
2024-06-17T15:44:11,294   Found link https://files.pythonhosted.org/packages/cb/c9/8d7c9c427863a8e1be9e5487520f26a4ea63a34e735a3c5598f1e8b43cb4/moleculekit-1.2.5.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.2.5
2024-06-17T15:44:11,295   Found link https://files.pythonhosted.org/packages/39/b3/50e46e2780075c4adf93bba603ad047457f3d9cd70a77f4909776ec446b3/moleculekit-1.2.7.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.2.7
2024-06-17T15:44:11,295   Found link https://files.pythonhosted.org/packages/29/f1/10cd916b3024b2efe08c06413dff5938859e01c8bc671cde8bf070758031/moleculekit-1.2.8.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.2.8
2024-06-17T15:44:11,296   Found link https://files.pythonhosted.org/packages/47/55/207179562e46a3cba4a1cb813c1754be6c5a1664a11d1dcffe89b51c1ca4/moleculekit-1.2.9.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.2.9
2024-06-17T15:44:11,296   Found link https://files.pythonhosted.org/packages/2e/1c/a07b4d5f471fc90ba12e88e44675ddbf0ba4b0a658c2fc014491a7a27092/moleculekit-1.3.0.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.3.0
2024-06-17T15:44:11,297   Found link https://files.pythonhosted.org/packages/80/9b/d0375ea58246506494224acf560e8d2da623d1635047089316a01ab146a0/moleculekit-1.3.1.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.3.1
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2024-06-17T15:44:11,298   Found link https://files.pythonhosted.org/packages/0f/87/45be2661273532639b9aef46f7335ef962ac0f4d5a022cad9fae46b3ed76/moleculekit-1.3.4.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.3.4
2024-06-17T15:44:11,299   Found link https://files.pythonhosted.org/packages/0b/c2/d5b36c664c2d4f8736b5dbf06b05d9efeeacd4d488125c8feb0e4efb3594/moleculekit-1.3.5.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.3.5
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2024-06-17T15:44:11,300   Found link https://files.pythonhosted.org/packages/1a/fd/3788664397288c8169d713da13ae2419a0534a9ee826d1ce718811e27569/moleculekit-1.3.8.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.3.8
2024-06-17T15:44:11,301   Found link https://files.pythonhosted.org/packages/fe/a6/b9b3e9ec27de783731911f111354a9d1e6cd766e47aeff934b769a415311/moleculekit-1.3.9.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.3.9
2024-06-17T15:44:11,302   Found link https://files.pythonhosted.org/packages/fd/8d/5420b8fc8713c9a27e74eb85aab9b758169f739c0d6aca1540d73582aba6/moleculekit-1.4.0.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.4.0
2024-06-17T15:44:11,302   Found link https://files.pythonhosted.org/packages/68/7e/cd023ea3b0a765a65611a8b103d51dbb55fc97bb9df335095d520ad46deb/moleculekit-1.4.1.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.4.1
2024-06-17T15:44:11,303   Found link https://files.pythonhosted.org/packages/21/ce/d98ddf9106565632f876b1b853bb23c64534e65884b9d3d73208c7fe17e6/moleculekit-1.4.2.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.4.2
2024-06-17T15:44:11,304   Found link https://files.pythonhosted.org/packages/f9/12/68450058da1b4f39328ce41f22cfb5a38717147b3e624cb76b225318dd96/moleculekit-1.4.3.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.4.3
2024-06-17T15:44:11,305   Found link https://files.pythonhosted.org/packages/a1/9c/61a877e38393372a16746096dc836e3a24d0fe31240644258396f6ec1dd5/moleculekit-1.4.5-1.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.4.5-1
2024-06-17T15:44:11,306   Found link https://files.pythonhosted.org/packages/65/2b/f8fbac2b196d899066e4d26b78e62adc1f2356734b3de63da153e9b18e44/moleculekit-1.4.6.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.4.6
2024-06-17T15:44:11,307   Found link https://files.pythonhosted.org/packages/6b/80/69b1d49f78060edafdb9a5e49080f189c6d72a7a2a83f2567f7abfaf9fcb/moleculekit-1.4.7.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.4.7
2024-06-17T15:44:11,307   Found link https://files.pythonhosted.org/packages/91/bd/4e692bc271e6a957732a20347e43f0388e12ab60df6717a178b628f18fce/moleculekit-1.4.8.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.4.8
2024-06-17T15:44:11,308   Found link https://files.pythonhosted.org/packages/0b/22/49372d8ecca8baa50e08ca3971786e207825556920bd5b19697d085bf681/moleculekit-1.4.9.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.4.9
2024-06-17T15:44:11,309   Found link https://files.pythonhosted.org/packages/3a/52/c87b6f8651063e38a723e8506788475ecf32f2b2e67fcf42739e8737f120/moleculekit-1.5.0.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.5.0
2024-06-17T15:44:11,310   Found link https://files.pythonhosted.org/packages/e9/64/50b82745c79e8f28fb8c1615e637221dceb4af565af8e785b04b5c9bd7f0/moleculekit-1.5.1.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.5.1
2024-06-17T15:44:11,311   Found link https://files.pythonhosted.org/packages/3d/18/e249854f20e449b9890eca08ef37ccdb87f719b6ac0db8e9d2ca9c4eb890/moleculekit-1.5.2.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.5.2
2024-06-17T15:44:11,313   Found link https://files.pythonhosted.org/packages/3f/e8/860f3b89afd29b5ba405ab028f3d49ac22e95557b6b906e475c2f6558df5/moleculekit-1.5.3.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.5.3
2024-06-17T15:44:11,314   Found link https://files.pythonhosted.org/packages/e7/1e/8f982d3446852e3778250fc8af491eb3ceaf081b891eb7a4936776dfe730/moleculekit-1.5.4.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.5.4
2024-06-17T15:44:11,315   Found link https://files.pythonhosted.org/packages/46/81/f7be4e086eb469d0fda5d9be51c6fe2107d39c4127f64218774c40f5923a/moleculekit-1.5.5.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.5.5
2024-06-17T15:44:11,316   Found link https://files.pythonhosted.org/packages/d1/99/5866f661f25b1168804a5c26ab38edd26a7239d91b84c13fb129c1f84ab6/moleculekit-1.5.6.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.5.6
2024-06-17T15:44:11,317   Found link https://files.pythonhosted.org/packages/25/45/e228ef66e7b03b1613382490f07c3db31c9713e3878eb9766781076b8209/moleculekit-1.5.7.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.5.7
2024-06-17T15:44:11,318   Found link https://files.pythonhosted.org/packages/5e/4a/8e20ee9556cfcdc8c51aac44a054b76db1b9abf8c83124f51521397f7673/moleculekit-1.5.8.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.5.8
2024-06-17T15:44:11,319   Found link https://files.pythonhosted.org/packages/00/79/eafaf1a45594ebe0f5e3e3a775bb8e4635dd46e63a048cc577a4e3c4c29b/moleculekit-1.6.0.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.6.0
2024-06-17T15:44:11,320   Found link https://files.pythonhosted.org/packages/c2/66/b802cbaa73639d3fb24d7aca0a21b932bd6b781103c3aa0662fd27dd64e0/moleculekit-1.6.1.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.6.1
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2024-06-17T15:44:11,322   Found link https://files.pythonhosted.org/packages/d6/3a/77427acaba2c2b4670a4b94ce5cd161b60ac547e812a6337374265f3272d/moleculekit-1.6.5.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.6.5
2024-06-17T15:44:11,323   Found link https://files.pythonhosted.org/packages/75/c9/3ed46001d1cc28d02ee2ee30de3377bc39f9545ea0a7b7932b6c31770879/moleculekit-1.6.6.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.6.6
2024-06-17T15:44:11,324   Found link https://files.pythonhosted.org/packages/b0/eb/47f199ab494f4a3929e1265222e24dcfce4dc2dde54923d1be8e513bf765/moleculekit-1.6.7.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.6.7
2024-06-17T15:44:11,325   Found link https://files.pythonhosted.org/packages/02/62/8710bf8c331f6c5d3320bcd99ce1f53fd72c8ed39767e69fe09127926c58/moleculekit-1.6.8.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.6.8
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2024-06-17T15:44:11,328   Found link https://files.pythonhosted.org/packages/4e/3a/29fb1aa0e3792fef88348885348370f39af453fb75d5505a208068d1c4ac/moleculekit-1.7.1.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.1
2024-06-17T15:44:11,328   Found link https://files.pythonhosted.org/packages/4a/13/dd6711d592d27e604c48830300f5596aafa1bbc479dc5eb49ed9797085eb/moleculekit-1.7.2.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.2
2024-06-17T15:44:11,329   Found link https://files.pythonhosted.org/packages/c7/cb/205d8925276863e2892c2c1ae2747cd4834cd3f174521172670ce43b50b8/moleculekit-1.7.3.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.3
2024-06-17T15:44:11,330   Found link https://files.pythonhosted.org/packages/6f/9e/2bce5993679a3666fd12803b93bb9a4daa59922f0ecdd26e9726df5d7f73/moleculekit-1.7.4.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.4
2024-06-17T15:44:11,331   Found link https://files.pythonhosted.org/packages/fa/63/993d55964a5afc9417ca31ab06a7d08f10b8fb38c63157bef0f350b4bb49/moleculekit-1.7.6.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.6
2024-06-17T15:44:11,332   Found link https://files.pythonhosted.org/packages/9b/3d/351d6444550ae455f20139e1d71ab138449c75b4a9782ac831dc9c6daa76/moleculekit-1.7.7.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.7
2024-06-17T15:44:11,333   Found link https://files.pythonhosted.org/packages/1b/7a/80d740239c506d7eea7cdba7576c503012556338861c10d5d2908e1912f7/moleculekit-1.7.8.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.8
2024-06-17T15:44:11,334   Found link https://files.pythonhosted.org/packages/05/e0/64dd3801f9b9cd011f8093d85201df3b259bab3502b87b6e37edadea0f21/moleculekit-1.7.9.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.9
2024-06-17T15:44:11,335   Found link https://files.pythonhosted.org/packages/0e/fd/650680f6dcf164b179c8a334c56fc7ba97d71519330f03bdc485307b6a0d/moleculekit-1.7.10.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.10
2024-06-17T15:44:11,336   Found link https://files.pythonhosted.org/packages/37/05/3105db0d4a63b49d0f4534b5e9d6a488b96b83b3aac621224338f3a6aa6b/moleculekit-1.7.12.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.12
2024-06-17T15:44:11,337   Found link https://files.pythonhosted.org/packages/08/ec/48d8122fea93c59592ae22dc29f16496087cdf31064793e6da173fcf2e36/moleculekit-1.7.13.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.13
2024-06-17T15:44:11,338   Found link https://files.pythonhosted.org/packages/46/79/442f4846c44e99a4e5d61b09e65cb57ec69b24ae4bf7e8b704f125238c6c/moleculekit-1.7.14.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.14
2024-06-17T15:44:11,339   Found link https://files.pythonhosted.org/packages/fa/fd/aa5c1911df4cf3bee9575fbc1cdbd39bcb1d9164e77c772fa938be672cc0/moleculekit-1.7.15.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.15
2024-06-17T15:44:11,340   Found link https://files.pythonhosted.org/packages/38/fe/74b265e75deb09844035690d506614163cd262a2d6bc7c83b4e2f28d4bb9/moleculekit-1.7.16.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.16
2024-06-17T15:44:11,341   Found link https://files.pythonhosted.org/packages/8b/2f/56c308933a9652bc40c41a53d57509ef38cc3c21d55b6f5570c2d9a865ed/moleculekit-1.7.17.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.17
2024-06-17T15:44:11,342   Found link https://files.pythonhosted.org/packages/96/a3/11b655506ce842ebea0b6d4c86883a538095687cb7bc9c4a179420971bd7/moleculekit-1.8.1.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.1
2024-06-17T15:44:11,343   Found link https://files.pythonhosted.org/packages/9d/d3/ead35117c0f3b3b1be847d561ff31bf59dfde0c49982bff106a3cc3876f0/moleculekit-1.8.2.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.2
2024-06-17T15:44:11,344   Found link https://files.pythonhosted.org/packages/23/e8/3ebe2bfb667296b1c79d4e59fdfb487116bfd8bec579ca242eec7ecad0c2/moleculekit-1.8.3.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.3
2024-06-17T15:44:11,345   Found link https://files.pythonhosted.org/packages/6f/4d/4a0e90a65d79829ae0bec8d857de2f8b7e18b6d60e05daa99cdbed0061c0/moleculekit-1.8.4.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.4
2024-06-17T15:44:11,346   Found link https://files.pythonhosted.org/packages/15/bb/f88884d7710aeb6290c69f180df912ce73beb4975ceea9f58aa28250737c/moleculekit-1.8.5.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.5
2024-06-17T15:44:11,347   Found link https://files.pythonhosted.org/packages/e4/a8/ef9f25e6e42436ceaecfd8bb0aadbf40855976374a46b8cf8d55000fa0a8/moleculekit-1.8.6.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.6
2024-06-17T15:44:11,348   Found link https://files.pythonhosted.org/packages/67/c5/ed682f5ea9a16915b98612e0b274b50303bb912ccb71ab106247e01be8c2/moleculekit-1.8.7.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.7
2024-06-17T15:44:11,349   Found link https://files.pythonhosted.org/packages/23/cd/efd06d75f4a0e866e23156ca3c771c99a22bcfb5f2d1b0f42f853b9cfd27/moleculekit-1.8.10.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.10
2024-06-17T15:44:11,350   Found link https://files.pythonhosted.org/packages/d2/1a/935247798d3097c5093e33b026729b2e218fefd40f58c4b8b8bd3fcf93b4/moleculekit-1.8.13.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.13
2024-06-17T15:44:11,351   Found link https://files.pythonhosted.org/packages/b0/1c/de17759f3cbae5b6b06b60242724a93570b332f657fdeff9e582b6bda391/moleculekit-1.8.14.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.14
2024-06-17T15:44:11,352   Found link https://files.pythonhosted.org/packages/20/a3/7476dceb769dd7bb318d84590a372f1974e978cefb204da16f2b4d99a34e/moleculekit-1.8.15.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.15
2024-06-17T15:44:11,353   Found link https://files.pythonhosted.org/packages/ce/8d/e060616d8e4e03f56d544939f3ccea7f3d665038a66bbf57ba0bcd1f4711/moleculekit-1.8.17.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.17
2024-06-17T15:44:11,354   Found link https://files.pythonhosted.org/packages/36/66/5b4a8da5461b4547e9b3e58f477ddf359701865a7e2ca5b0348fa20f54ae/moleculekit-1.8.18.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.18
2024-06-17T15:44:11,355   Found link https://files.pythonhosted.org/packages/51/33/5a8b10a29ca3c7a893f4a727341611121bc5ec9e2e0004e0c0d4748e33f7/moleculekit-1.8.19.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.19
2024-06-17T15:44:11,355   Found link https://files.pythonhosted.org/packages/0c/02/8cb68afa12c5dac1a7e486d39e9017883f51e17c4fd781898edf79cd2f00/moleculekit-1.8.20.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.20
2024-06-17T15:44:11,356   Found link https://files.pythonhosted.org/packages/65/3f/75e14ea7f71098018974144579774255fc66d1b7f7dae2ff858a87aac1e7/moleculekit-1.8.21.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.21
2024-06-17T15:44:11,357   Found link https://files.pythonhosted.org/packages/2c/2f/d00d1cf86239c509fb4dce470fcaf771e332724034b7db1846332924366a/moleculekit-1.8.22.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.22
2024-06-17T15:44:11,358   Found link https://files.pythonhosted.org/packages/55/ad/3c392a8ef92f6437da30769f6b9770591c79b77604db9aa264d5c0291edf/moleculekit-1.8.23.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.23
2024-06-17T15:44:11,359   Found link https://files.pythonhosted.org/packages/64/72/c2549970c717c236688863287da25f453fbf8b3ea3dee071af9e96be6592/moleculekit-1.8.24.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.24
2024-06-17T15:44:11,360   Found link https://files.pythonhosted.org/packages/f2/d0/2c92a559a74562405f0628bc7880908412790a87c494c9b73e3962c7baa9/moleculekit-1.8.26.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.26
2024-06-17T15:44:11,361   Found link https://files.pythonhosted.org/packages/0e/be/42a9eff89e9e0c3bc08940ead6c991f366ce109bb75ece11cc3b2996d001/moleculekit-1.8.27.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.27
2024-06-17T15:44:11,362   Found link https://files.pythonhosted.org/packages/30/bd/5ed4ddd1b8934c0594027c765bab0013b8081e818e92c2a98462f64d4dcd/moleculekit-1.8.28.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.28
2024-06-17T15:44:11,363   Found link https://files.pythonhosted.org/packages/2a/f9/1d7fe1a09e04049ace7db33faf27c26478ba9674a3cb39d1115fcd1d0679/moleculekit-1.8.29.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.29
2024-06-17T15:44:11,364   Found link https://files.pythonhosted.org/packages/d6/e2/f7f2b1870c62092c3d84ac0055b50305611a1253142cb592babdfcbdb266/moleculekit-1.8.31.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.31
2024-06-17T15:44:11,365   Found link https://files.pythonhosted.org/packages/5a/df/44bc133f3cbda05e621a72b9fef30ecaa96bc88bd5f47136a89b22d82b30/moleculekit-1.8.32.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.32
2024-06-17T15:44:11,366   Found link https://files.pythonhosted.org/packages/2b/34/e2642fe6f54ec67fdba107eb29968217af52f0b6ef1ac69f533164c6584e/moleculekit-1.8.33.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.33
2024-06-17T15:44:11,367   Found link https://files.pythonhosted.org/packages/d4/0f/1b1f0d41c3ff855afca374140213f1c43b3a9659eebc4460899fead843ff/moleculekit-1.8.34.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.34
2024-06-17T15:44:11,368 Fetching project page and analyzing links: https://www.piwheels.org/simple/moleculekit/
2024-06-17T15:44:11,369 Getting page https://www.piwheels.org/simple/moleculekit/
2024-06-17T15:44:11,370 Found index url https://www.piwheels.org/simple/
2024-06-17T15:44:11,570 Fetched page https://www.piwheels.org/simple/moleculekit/ as text/html
2024-06-17T15:44:11,661   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.8.33-cp39-cp39-linux_armv6l.whl#sha256=3d6bb5aa26d1b0395385d5f79f151e71fc73ec74703c4bcd649823311c63a46d (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
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2024-06-17T15:44:11,662   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.8.33-cp311-cp311-linux_armv6l.whl#sha256=d0cfcf678117cf5ef4f82d9243483dc4716205e56e437386690ac215787c35cf (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
2024-06-17T15:44:11,663   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.8.33-cp311-cp311-linux_armv7l.whl#sha256=d0cfcf678117cf5ef4f82d9243483dc4716205e56e437386690ac215787c35cf (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
2024-06-17T15:44:11,663   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.8.32-cp311-cp311-linux_armv6l.whl#sha256=1cb8ae4cdb11708fcd31f1c3de19ec4fb93bbecf44e8170e8464bc236f166efc (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
2024-06-17T15:44:11,664   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.8.32-cp311-cp311-linux_armv7l.whl#sha256=1cb8ae4cdb11708fcd31f1c3de19ec4fb93bbecf44e8170e8464bc236f166efc (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
2024-06-17T15:44:11,664   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.8.32-cp39-cp39-linux_armv6l.whl#sha256=088f285bb9579634e6a88a6ce995af058e2091f60ca38a9a71b19acea17e339b (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
2024-06-17T15:44:11,665   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.8.32-cp39-cp39-linux_armv7l.whl#sha256=088f285bb9579634e6a88a6ce995af058e2091f60ca38a9a71b19acea17e339b (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
2024-06-17T15:44:11,666   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.8.31-cp311-cp311-linux_armv6l.whl#sha256=218f8197ef61b4d204fdf063e6c7161b0c1cada6b9072a80ed32467b83651997 (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
2024-06-17T15:44:11,666   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.8.31-cp311-cp311-linux_armv7l.whl#sha256=218f8197ef61b4d204fdf063e6c7161b0c1cada6b9072a80ed32467b83651997 (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
2024-06-17T15:44:11,667   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.8.31-cp39-cp39-linux_armv6l.whl#sha256=0f5cd707ec1b6d1a5e86c8fb1763866bc13d430d94662be1dfa4d74044bfe743 (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
2024-06-17T15:44:11,668   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.8.31-cp39-cp39-linux_armv7l.whl#sha256=0f5cd707ec1b6d1a5e86c8fb1763866bc13d430d94662be1dfa4d74044bfe743 (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
2024-06-17T15:44:11,669   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.8.29-cp311-cp311-linux_armv6l.whl#sha256=ba84e1392124eb438846b78998fb0f26e8d9942c644dd5574f49d9eb9b0f6a87 (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
2024-06-17T15:44:11,669   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.8.29-cp311-cp311-linux_armv7l.whl#sha256=ba84e1392124eb438846b78998fb0f26e8d9942c644dd5574f49d9eb9b0f6a87 (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
2024-06-17T15:44:11,670   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.8.29-cp39-cp39-linux_armv6l.whl#sha256=44fb6340ac1ed849bf5c52a43b7b0334c3869777bcdec4444fc6ac0303a7d18b (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
2024-06-17T15:44:11,670   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.8.29-cp39-cp39-linux_armv7l.whl#sha256=44fb6340ac1ed849bf5c52a43b7b0334c3869777bcdec4444fc6ac0303a7d18b (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
2024-06-17T15:44:11,671   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.8.28-cp311-cp311-linux_armv6l.whl#sha256=0bd78844c5d2c1631992bbe75050af4b5c6a7c95431e8637867fb30717804582 (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
2024-06-17T15:44:11,672   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.8.28-cp311-cp311-linux_armv7l.whl#sha256=0bd78844c5d2c1631992bbe75050af4b5c6a7c95431e8637867fb30717804582 (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
2024-06-17T15:44:11,672   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.8.28-cp39-cp39-linux_armv6l.whl#sha256=04c1c3834e4447c5f50b16abf23b1e9f68e8e832712398c35671d844fbf2f35e (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
2024-06-17T15:44:11,673   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.8.28-cp39-cp39-linux_armv7l.whl#sha256=04c1c3834e4447c5f50b16abf23b1e9f68e8e832712398c35671d844fbf2f35e (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
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2024-06-17T15:44:11,801   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.13-cp39-cp39-linux_armv6l.whl#sha256=413233b9ea619a276a0cc4911cee59417c2be694ab30c5c5c836a31391e5b6c4 (from https://www.piwheels.org/simple/moleculekit/)
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2024-06-17T15:44:11,803   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.12-cp37-cp37m-linux_armv7l.whl#sha256=a871d3b206f986ddc16b14a1e59904384aea1d6936948be45d6d3d05211637c4 (from https://www.piwheels.org/simple/moleculekit/)
2024-06-17T15:44:11,804   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.12-cp39-cp39-linux_armv6l.whl#sha256=d75d99aa397ece4f4d163fff8e78e6868ccbab4190016befc567c5f08d1cbbd4 (from https://www.piwheels.org/simple/moleculekit/)
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2024-06-17T15:44:11,805   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.9-cp37-cp37m-linux_armv6l.whl#sha256=66dbff1fb6cecaa00851b6b78480b3d8eb3f5f5d9aae539ad9397ec3dc9b22d8 (from https://www.piwheels.org/simple/moleculekit/)
2024-06-17T15:44:11,806   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.9-cp37-cp37m-linux_armv7l.whl#sha256=66dbff1fb6cecaa00851b6b78480b3d8eb3f5f5d9aae539ad9397ec3dc9b22d8 (from https://www.piwheels.org/simple/moleculekit/)
2024-06-17T15:44:11,806   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.9-cp39-cp39-linux_armv6l.whl#sha256=0d0004615c5da8823417816aa8e72f2ac2a2993c01c9ffa07540521dd44cdeb9 (from https://www.piwheels.org/simple/moleculekit/)
2024-06-17T15:44:11,807   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.9-cp39-cp39-linux_armv7l.whl#sha256=0d0004615c5da8823417816aa8e72f2ac2a2993c01c9ffa07540521dd44cdeb9 (from https://www.piwheels.org/simple/moleculekit/)
2024-06-17T15:44:11,807   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.8-cp37-cp37m-linux_armv6l.whl#sha256=e8d8fc1d3f31a50afae4252a2c403fb5b928eff4452d3954322d0d9b2d5383c5 (from https://www.piwheels.org/simple/moleculekit/)
2024-06-17T15:44:11,808   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.8-cp37-cp37m-linux_armv7l.whl#sha256=e8d8fc1d3f31a50afae4252a2c403fb5b928eff4452d3954322d0d9b2d5383c5 (from https://www.piwheels.org/simple/moleculekit/)
2024-06-17T15:44:11,808   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.8-cp39-cp39-linux_armv6l.whl#sha256=72aada7099cf1c7fbed38107b64c08622659cb763f35e5f2b75052a08f5cb853 (from https://www.piwheels.org/simple/moleculekit/)
2024-06-17T15:44:11,809   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.8-cp39-cp39-linux_armv7l.whl#sha256=72aada7099cf1c7fbed38107b64c08622659cb763f35e5f2b75052a08f5cb853 (from https://www.piwheels.org/simple/moleculekit/)
2024-06-17T15:44:11,809   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.7-cp39-cp39-linux_armv6l.whl#sha256=b1bfb9de96ef11fdd768cccd1b894300c470a7389f83c8cca3f42ac636f3dcb7 (from https://www.piwheels.org/simple/moleculekit/)
2024-06-17T15:44:11,810   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.7-cp39-cp39-linux_armv7l.whl#sha256=b1bfb9de96ef11fdd768cccd1b894300c470a7389f83c8cca3f42ac636f3dcb7 (from https://www.piwheels.org/simple/moleculekit/)
2024-06-17T15:44:11,810   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.7-cp37-cp37m-linux_armv6l.whl#sha256=8e98ed7e4f43a05739fbb98f22bc0aeabe5d6a76673b8883a4fa88c3762ba080 (from https://www.piwheels.org/simple/moleculekit/)
2024-06-17T15:44:11,811   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.7-cp37-cp37m-linux_armv7l.whl#sha256=8e98ed7e4f43a05739fbb98f22bc0aeabe5d6a76673b8883a4fa88c3762ba080 (from https://www.piwheels.org/simple/moleculekit/)
2024-06-17T15:44:11,812   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.6-cp37-cp37m-linux_armv6l.whl#sha256=881a09b6497cca181f77a3388648b0ec90974f79d8c81513666ac38dbed69842 (from https://www.piwheels.org/simple/moleculekit/)
2024-06-17T15:44:11,812   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.6-cp37-cp37m-linux_armv7l.whl#sha256=881a09b6497cca181f77a3388648b0ec90974f79d8c81513666ac38dbed69842 (from https://www.piwheels.org/simple/moleculekit/)
2024-06-17T15:44:11,813   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.6-cp39-cp39-linux_armv6l.whl#sha256=de2e9946d86d3e6deb732605b7b9804d3ee229e0d1e869093c26731ff1cf6e49 (from https://www.piwheels.org/simple/moleculekit/)
2024-06-17T15:44:11,814   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.6-cp39-cp39-linux_armv7l.whl#sha256=de2e9946d86d3e6deb732605b7b9804d3ee229e0d1e869093c26731ff1cf6e49 (from https://www.piwheels.org/simple/moleculekit/)
2024-06-17T15:44:11,814   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.5-cp37-cp37m-linux_armv6l.whl#sha256=30013f87dd3dc0c9b99cc9862ac0d0be618fe63faa7c7c4623be9cdd86396624 (from https://www.piwheels.org/simple/moleculekit/)
2024-06-17T15:44:11,815   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.5-cp37-cp37m-linux_armv7l.whl#sha256=30013f87dd3dc0c9b99cc9862ac0d0be618fe63faa7c7c4623be9cdd86396624 (from https://www.piwheels.org/simple/moleculekit/)
2024-06-17T15:44:11,815   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.5-cp39-cp39-linux_armv6l.whl#sha256=f42eb6c315d3242355c8e36090f1f77ed92b768cefb595178e81eb89fa5a79d5 (from https://www.piwheels.org/simple/moleculekit/)
2024-06-17T15:44:11,816   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.5-cp39-cp39-linux_armv7l.whl#sha256=f42eb6c315d3242355c8e36090f1f77ed92b768cefb595178e81eb89fa5a79d5 (from https://www.piwheels.org/simple/moleculekit/)
2024-06-17T15:44:11,816   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.4-cp37-cp37m-linux_armv6l.whl#sha256=a30adf43b2972eb0763ce00b18dc4dffb61a74ac1da2391652cf53f73dba67ce (from https://www.piwheels.org/simple/moleculekit/)
2024-06-17T15:44:11,817   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.4-cp37-cp37m-linux_armv7l.whl#sha256=a30adf43b2972eb0763ce00b18dc4dffb61a74ac1da2391652cf53f73dba67ce (from https://www.piwheels.org/simple/moleculekit/)
2024-06-17T15:44:11,817   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.4-cp39-cp39-linux_armv6l.whl#sha256=e123a257574ee84a677c70d154c26fb75cdf29cfb3f9491b309d8ad47e37f3c0 (from https://www.piwheels.org/simple/moleculekit/)
2024-06-17T15:44:11,818   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.4-cp39-cp39-linux_armv7l.whl#sha256=e123a257574ee84a677c70d154c26fb75cdf29cfb3f9491b309d8ad47e37f3c0 (from https://www.piwheels.org/simple/moleculekit/)
2024-06-17T15:44:11,818   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.3-cp39-cp39-linux_armv6l.whl#sha256=c666ea91f79ecf6c6d99ca251e7f938e7e82208a01a91d39b827ba64eee4ce41 (from https://www.piwheels.org/simple/moleculekit/)
2024-06-17T15:44:11,819   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.3-cp39-cp39-linux_armv7l.whl#sha256=c666ea91f79ecf6c6d99ca251e7f938e7e82208a01a91d39b827ba64eee4ce41 (from https://www.piwheels.org/simple/moleculekit/)
2024-06-17T15:44:11,820   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.3-cp37-cp37m-linux_armv6l.whl#sha256=286faceca4683f35ce8e9aeefefdecee1c02150dfc9b7deb62015ce17f3f557c (from https://www.piwheels.org/simple/moleculekit/)
2024-06-17T15:44:11,821   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.3-cp37-cp37m-linux_armv7l.whl#sha256=286faceca4683f35ce8e9aeefefdecee1c02150dfc9b7deb62015ce17f3f557c (from https://www.piwheels.org/simple/moleculekit/)
2024-06-17T15:44:11,821   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.2-cp37-cp37m-linux_armv6l.whl#sha256=e7e709fde2552ca5cb602bf420ed89d740b1e75bd32c879ee33ffe3b747b109a (from https://www.piwheels.org/simple/moleculekit/)
2024-06-17T15:44:11,822   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.2-cp37-cp37m-linux_armv7l.whl#sha256=e7e709fde2552ca5cb602bf420ed89d740b1e75bd32c879ee33ffe3b747b109a (from https://www.piwheels.org/simple/moleculekit/)
2024-06-17T15:44:11,822   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.2-cp39-cp39-linux_armv6l.whl#sha256=390edc2399f77605c97d9fc8db3b63f282ba297c67fe9514db91ebec945fa2d7 (from https://www.piwheels.org/simple/moleculekit/)
2024-06-17T15:44:11,823   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.2-cp39-cp39-linux_armv7l.whl#sha256=390edc2399f77605c97d9fc8db3b63f282ba297c67fe9514db91ebec945fa2d7 (from https://www.piwheels.org/simple/moleculekit/)
2024-06-17T15:44:11,824   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.1-cp39-cp39-linux_armv6l.whl#sha256=aed227f0c49804421d71b6c949c0d24367a74207b8f855c59e4e73a89b5a93ed (from https://www.piwheels.org/simple/moleculekit/)
2024-06-17T15:44:11,824   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.1-cp39-cp39-linux_armv7l.whl#sha256=aed227f0c49804421d71b6c949c0d24367a74207b8f855c59e4e73a89b5a93ed (from https://www.piwheels.org/simple/moleculekit/)
2024-06-17T15:44:11,825   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.1-cp37-cp37m-linux_armv6l.whl#sha256=ad67f1f622d2a2a49358691e3e784e48277aa09cf1f984ed60e847892a3413d7 (from https://www.piwheels.org/simple/moleculekit/)
2024-06-17T15:44:11,825   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.1-cp37-cp37m-linux_armv7l.whl#sha256=ad67f1f622d2a2a49358691e3e784e48277aa09cf1f984ed60e847892a3413d7 (from https://www.piwheels.org/simple/moleculekit/)
2024-06-17T15:44:11,826   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.0-cp37-cp37m-linux_armv6l.whl#sha256=ab05d1bc06d0d249cbb4871d51e6dca4b9e8474288d86326bd7dd603b9b99820 (from https://www.piwheels.org/simple/moleculekit/)
2024-06-17T15:44:11,827   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.0-cp37-cp37m-linux_armv7l.whl#sha256=ab05d1bc06d0d249cbb4871d51e6dca4b9e8474288d86326bd7dd603b9b99820 (from https://www.piwheels.org/simple/moleculekit/)
2024-06-17T15:44:11,827   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.0-cp39-cp39-linux_armv6l.whl#sha256=7f76858d50e6bb4611f32f053be82003c583d01ad83aa44b6f220dce89a7856f (from https://www.piwheels.org/simple/moleculekit/)
2024-06-17T15:44:11,828   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.0-cp39-cp39-linux_armv7l.whl#sha256=7f76858d50e6bb4611f32f053be82003c583d01ad83aa44b6f220dce89a7856f (from https://www.piwheels.org/simple/moleculekit/)
2024-06-17T15:44:11,828   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.9-cp37-cp37m-linux_armv6l.whl#sha256=34809734c61c1fcc4c4de1857dadfb84e726cbfe0dd0b60fce249166d29a3bb2 (from https://www.piwheels.org/simple/moleculekit/)
2024-06-17T15:44:11,829   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.9-cp37-cp37m-linux_armv7l.whl#sha256=34809734c61c1fcc4c4de1857dadfb84e726cbfe0dd0b60fce249166d29a3bb2 (from https://www.piwheels.org/simple/moleculekit/)
2024-06-17T15:44:11,830   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.9-cp39-cp39-linux_armv6l.whl#sha256=0f20a256b92c66dbaac370cf1a01b885b10f1371beacaec65ec35ce8ac935afb (from https://www.piwheels.org/simple/moleculekit/)
2024-06-17T15:44:11,831   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.9-cp39-cp39-linux_armv7l.whl#sha256=0f20a256b92c66dbaac370cf1a01b885b10f1371beacaec65ec35ce8ac935afb (from https://www.piwheels.org/simple/moleculekit/)
2024-06-17T15:44:11,831   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.6-cp37-cp37m-linux_armv6l.whl#sha256=93f57ab9c01697fb9f28ed39e4c5c32828e862bf410f556fdbc43c7a72825cb2 (from https://www.piwheels.org/simple/moleculekit/)
2024-06-17T15:44:11,832   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.6-cp37-cp37m-linux_armv7l.whl#sha256=93f57ab9c01697fb9f28ed39e4c5c32828e862bf410f556fdbc43c7a72825cb2 (from https://www.piwheels.org/simple/moleculekit/)
2024-06-17T15:44:11,832   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.6-cp39-cp39-linux_armv6l.whl#sha256=a8a1cb7f5b851f5f58273e5d12aa871e5086f6bfd844f33f0b4bf20c83f429ec (from https://www.piwheels.org/simple/moleculekit/)
2024-06-17T15:44:11,833   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.6-cp39-cp39-linux_armv7l.whl#sha256=a8a1cb7f5b851f5f58273e5d12aa871e5086f6bfd844f33f0b4bf20c83f429ec (from https://www.piwheels.org/simple/moleculekit/)
2024-06-17T15:44:11,834   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.5-cp37-cp37m-linux_armv6l.whl#sha256=25d1bdfd25f377e21e8a522d9f3cd2ce3896cf857957c8ec876c69f4de8d53f5 (from https://www.piwheels.org/simple/moleculekit/)
2024-06-17T15:44:11,834   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.5-cp37-cp37m-linux_armv7l.whl#sha256=25d1bdfd25f377e21e8a522d9f3cd2ce3896cf857957c8ec876c69f4de8d53f5 (from https://www.piwheels.org/simple/moleculekit/)
2024-06-17T15:44:11,835   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.5-cp39-cp39-linux_armv6l.whl#sha256=de79a8099ce28793ecc89cf8dfbcb6542a270d00290c96903280f704e2ec22e7 (from https://www.piwheels.org/simple/moleculekit/)
2024-06-17T15:44:11,835   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.5-cp39-cp39-linux_armv7l.whl#sha256=de79a8099ce28793ecc89cf8dfbcb6542a270d00290c96903280f704e2ec22e7 (from https://www.piwheels.org/simple/moleculekit/)
2024-06-17T15:44:11,836   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.3-cp37-cp37m-linux_armv6l.whl#sha256=2d64935710bb05965f486f3bd9f258d8d479dc5c00dc1535ba5e285c8786dcf1 (from https://www.piwheels.org/simple/moleculekit/)
2024-06-17T15:44:11,837   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.3-cp37-cp37m-linux_armv7l.whl#sha256=2d64935710bb05965f486f3bd9f258d8d479dc5c00dc1535ba5e285c8786dcf1 (from https://www.piwheels.org/simple/moleculekit/)
2024-06-17T15:44:11,837   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.3-cp39-cp39-linux_armv6l.whl#sha256=c1983524eecc8638287c4a1e09dda961635e861bf6f9342dc566a9f9a4c0b771 (from https://www.piwheels.org/simple/moleculekit/)
2024-06-17T15:44:11,838   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.3-cp39-cp39-linux_armv7l.whl#sha256=c1983524eecc8638287c4a1e09dda961635e861bf6f9342dc566a9f9a4c0b771 (from https://www.piwheels.org/simple/moleculekit/)
2024-06-17T15:44:11,839   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.2-cp39-cp39-linux_armv6l.whl#sha256=24cfa04ff95ecb68f6d261ba4176e979846a0424ba781a1e314ca233c5206ae7 (from https://www.piwheels.org/simple/moleculekit/)
2024-06-17T15:44:11,840   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.2-cp39-cp39-linux_armv7l.whl#sha256=24cfa04ff95ecb68f6d261ba4176e979846a0424ba781a1e314ca233c5206ae7 (from https://www.piwheels.org/simple/moleculekit/)
2024-06-17T15:44:11,840   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.2-cp37-cp37m-linux_armv6l.whl#sha256=3fa03496ffbd230b85c032f9e1ba3129efbd4c37f6509c6cfef258ce69ed6925 (from https://www.piwheels.org/simple/moleculekit/)
2024-06-17T15:44:11,841   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.2-cp37-cp37m-linux_armv7l.whl#sha256=3fa03496ffbd230b85c032f9e1ba3129efbd4c37f6509c6cfef258ce69ed6925 (from https://www.piwheels.org/simple/moleculekit/)
2024-06-17T15:44:11,841   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.1-cp37-cp37m-linux_armv6l.whl#sha256=584155aa2ddfa324fcd872934f8b25a296c40b34797209bb754f4a641a5b27eb (from https://www.piwheels.org/simple/moleculekit/)
2024-06-17T15:44:11,842   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.1-cp37-cp37m-linux_armv7l.whl#sha256=584155aa2ddfa324fcd872934f8b25a296c40b34797209bb754f4a641a5b27eb (from https://www.piwheels.org/simple/moleculekit/)
2024-06-17T15:44:11,843   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.1-cp39-cp39-linux_armv6l.whl#sha256=41b03e81b9cd75c716643741a53b8d4d5aeb1633b5e07091c1a7355b6b44d233 (from https://www.piwheels.org/simple/moleculekit/)
2024-06-17T15:44:11,843   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.1-cp39-cp39-linux_armv7l.whl#sha256=41b03e81b9cd75c716643741a53b8d4d5aeb1633b5e07091c1a7355b6b44d233 (from https://www.piwheels.org/simple/moleculekit/)
2024-06-17T15:44:11,844   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.0-cp37-cp37m-linux_armv6l.whl#sha256=b0ac5fea57fee9d962de25688ffde053c705daa15588886ea6aa7d5ab0986077 (from https://www.piwheels.org/simple/moleculekit/)
2024-06-17T15:44:11,844   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.0-cp37-cp37m-linux_armv7l.whl#sha256=b0ac5fea57fee9d962de25688ffde053c705daa15588886ea6aa7d5ab0986077 (from https://www.piwheels.org/simple/moleculekit/)
2024-06-17T15:44:11,845   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.0-cp39-cp39-linux_armv6l.whl#sha256=1b6361e98ea6ec0f3a7a4cce9ec9569a117c26deb95d0ce2bcea9d6f1f38d503 (from https://www.piwheels.org/simple/moleculekit/)
2024-06-17T15:44:11,846   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.0-cp39-cp39-linux_armv7l.whl#sha256=1b6361e98ea6ec0f3a7a4cce9ec9569a117c26deb95d0ce2bcea9d6f1f38d503 (from https://www.piwheels.org/simple/moleculekit/)
2024-06-17T15:44:11,846   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.9-cp37-cp37m-linux_armv6l.whl#sha256=a6ee5c9ac5b2648bb87ca08a6491d955004770b58180224d6d24bdb8cec17458 (from https://www.piwheels.org/simple/moleculekit/)
2024-06-17T15:44:11,847   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.9-cp37-cp37m-linux_armv7l.whl#sha256=a6ee5c9ac5b2648bb87ca08a6491d955004770b58180224d6d24bdb8cec17458 (from https://www.piwheels.org/simple/moleculekit/)
2024-06-17T15:44:11,848   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.9-cp39-cp39-linux_armv6l.whl#sha256=223cbac9f53d732be3d157f8e68c124c79439d057ec079594c681d7c5327f342 (from https://www.piwheels.org/simple/moleculekit/)
2024-06-17T15:44:11,849   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.9-cp39-cp39-linux_armv7l.whl#sha256=223cbac9f53d732be3d157f8e68c124c79439d057ec079594c681d7c5327f342 (from https://www.piwheels.org/simple/moleculekit/)
2024-06-17T15:44:11,849   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.8-cp37-cp37m-linux_armv6l.whl#sha256=19e3b710f4af1a0cb530060979c4216d87f0bd8a71e9f41824cf3565abbcbbdb (from https://www.piwheels.org/simple/moleculekit/)
2024-06-17T15:44:11,850   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.8-cp37-cp37m-linux_armv7l.whl#sha256=19e3b710f4af1a0cb530060979c4216d87f0bd8a71e9f41824cf3565abbcbbdb (from https://www.piwheels.org/simple/moleculekit/)
2024-06-17T15:44:11,850   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.8-cp39-cp39-linux_armv6l.whl#sha256=c18e44dbd9cf047134d440ff4fbb18722a3fdb0f348d431e8b7bed7dd398bd6e (from https://www.piwheels.org/simple/moleculekit/)
2024-06-17T15:44:11,851   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.8-cp39-cp39-linux_armv7l.whl#sha256=c18e44dbd9cf047134d440ff4fbb18722a3fdb0f348d431e8b7bed7dd398bd6e (from https://www.piwheels.org/simple/moleculekit/)
2024-06-17T15:44:11,852   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.7-cp37-cp37m-linux_armv6l.whl#sha256=8e63b6afb6715f46aae20e77b81958cdc652a7b1b6d294c5d559f7f06d5a5106 (from https://www.piwheels.org/simple/moleculekit/)
2024-06-17T15:44:11,852   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.7-cp37-cp37m-linux_armv7l.whl#sha256=8e63b6afb6715f46aae20e77b81958cdc652a7b1b6d294c5d559f7f06d5a5106 (from https://www.piwheels.org/simple/moleculekit/)
2024-06-17T15:44:11,853   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.7-cp39-cp39-linux_armv6l.whl#sha256=53a48e2a1781a9ae00e1f905778bad58715b08cff2ed4605148de1e481c9d50e (from https://www.piwheels.org/simple/moleculekit/)
2024-06-17T15:44:11,854   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.7-cp39-cp39-linux_armv7l.whl#sha256=53a48e2a1781a9ae00e1f905778bad58715b08cff2ed4605148de1e481c9d50e (from https://www.piwheels.org/simple/moleculekit/)
2024-06-17T15:44:11,855   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.6-cp37-cp37m-linux_armv6l.whl#sha256=a85d0cfa7da9e3593e97f1c63822eb0a9733744fdeb19c3bbd09e1f4242e1d91 (from https://www.piwheels.org/simple/moleculekit/)
2024-06-17T15:44:11,855   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.6-cp37-cp37m-linux_armv7l.whl#sha256=a85d0cfa7da9e3593e97f1c63822eb0a9733744fdeb19c3bbd09e1f4242e1d91 (from https://www.piwheels.org/simple/moleculekit/)
2024-06-17T15:44:11,856   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.6-cp39-cp39-linux_armv6l.whl#sha256=d5e470ed8514697a92a69cccdc99ddf6da22ddde2cc24b3e6ed949645778116f (from https://www.piwheels.org/simple/moleculekit/)
2024-06-17T15:44:11,857   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.6-cp39-cp39-linux_armv7l.whl#sha256=d5e470ed8514697a92a69cccdc99ddf6da22ddde2cc24b3e6ed949645778116f (from https://www.piwheels.org/simple/moleculekit/)
2024-06-17T15:44:11,857   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.5-cp311-cp311-linux_armv6l.whl#sha256=901c091adc4fc8b89c9de8f139d92aeffbfb6dc91799f2f9019f61646044ddd7 (from https://www.piwheels.org/simple/moleculekit/)
2024-06-17T15:44:11,859   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.5-cp311-cp311-linux_armv7l.whl#sha256=901c091adc4fc8b89c9de8f139d92aeffbfb6dc91799f2f9019f61646044ddd7 (from https://www.piwheels.org/simple/moleculekit/)
2024-06-17T15:44:11,860   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.5-cp37-cp37m-linux_armv6l.whl#sha256=2670c23b960766e0d52c54881bf4a8a663345f17190e380f84a273d51c8cdb3f (from https://www.piwheels.org/simple/moleculekit/)
2024-06-17T15:44:12,073   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.5-cp37-cp37m-linux_armv7l.whl#sha256=2670c23b960766e0d52c54881bf4a8a663345f17190e380f84a273d51c8cdb3f (from https://www.piwheels.org/simple/moleculekit/)
2024-06-17T15:44:12,073   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.5-cp39-cp39-linux_armv6l.whl#sha256=55bb6252b29c31ce9b46ca6dc68ed50a4fbe0e44a1b3f8f6f57b13faf1c939c1 (from https://www.piwheels.org/simple/moleculekit/)
2024-06-17T15:44:12,074   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.5-cp39-cp39-linux_armv7l.whl#sha256=55bb6252b29c31ce9b46ca6dc68ed50a4fbe0e44a1b3f8f6f57b13faf1c939c1 (from https://www.piwheels.org/simple/moleculekit/)
2024-06-17T15:44:12,075   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.4-cp37-cp37m-linux_armv6l.whl#sha256=c59aab79b14443a5c4194c3a08c69a2f1a98abedfda3217c0b15e5f694cb8dc3 (from https://www.piwheels.org/simple/moleculekit/)
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2024-06-17T15:44:12,086   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.3.1-py3-none-any.whl#sha256=b5d47dfce102b3af0001276b5d6fda0f055e2ef4f0076a06286d3b5e4f2361b4 (from https://www.piwheels.org/simple/moleculekit/)
2024-06-17T15:44:12,087   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.3.0-py3-none-any.whl#sha256=864f229abf24e864927569f3a17c74c39b977d8b7ba63cf2792e71f2c925eebd (from https://www.piwheels.org/simple/moleculekit/)
2024-06-17T15:44:12,088   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.2.9-py3-none-any.whl#sha256=76a22c44b710351a9d3c94d7e7c1d96c61e90251004b2a34cdcc92280d423a09 (from https://www.piwheels.org/simple/moleculekit/)
2024-06-17T15:44:12,089   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.2.8-py3-none-any.whl#sha256=6bb04aee6023e232156e64c6b7dc4510dc0dd6ccc5a0ff5150e2de459d264da4 (from https://www.piwheels.org/simple/moleculekit/)
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2024-06-17T15:44:12,100   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.1.19-py3-none-any.whl#sha256=1005a5a682737b1ba3f4858ca3919c129caae8d962bf750308e4cf6e7d37e215 (from https://www.piwheels.org/simple/moleculekit/)
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2024-06-17T15:44:12,101   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.1.15-py3-none-any.whl#sha256=4db5d8b5350b36ce41d225c471f0fdd64f708826935ac50675fb278c00275339 (from https://www.piwheels.org/simple/moleculekit/)
2024-06-17T15:44:12,102   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.1.14-py3-none-any.whl#sha256=051435884ce3f924fc9ba4dcb342a0d0ac85ff52bda6e656389f9a6f7eefec84 (from https://www.piwheels.org/simple/moleculekit/)
2024-06-17T15:44:12,103   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.1.12-py3-none-any.whl#sha256=8d96fbe0cf32ec0d217201a2f3274aedc42fb18f06b218394d4be0bfee25181a (from https://www.piwheels.org/simple/moleculekit/)
2024-06-17T15:44:12,103   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.1.9-py3-none-any.whl#sha256=f91729081bef559daf39b7eecfd7ae81dbd90706ad12061dc95146e3737a7385 (from https://www.piwheels.org/simple/moleculekit/)
2024-06-17T15:44:12,104   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.1.8-py3-none-any.whl#sha256=716d25ae18a4a9a3c8cfb1f0b0399f72463490e4f85a66631f3e77c0ddc427e3 (from https://www.piwheels.org/simple/moleculekit/)
2024-06-17T15:44:12,105   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.1.7-py3-none-any.whl#sha256=899ef09b80e1ad2e3931cb2023fae09cfeecd45b83fade6c8e8739126ca67a20 (from https://www.piwheels.org/simple/moleculekit/)
2024-06-17T15:44:12,105   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.1.6-py3-none-any.whl#sha256=0a288cd1efd660482dcc967caed02315dd8f02c19a0287eee0b8519d761db1b3 (from https://www.piwheels.org/simple/moleculekit/)
2024-06-17T15:44:12,106   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.1.5-py3-none-any.whl#sha256=2f111e31b3f90e63ca0154c528585208b8bd41a065aa0078325683f4b36eacec (from https://www.piwheels.org/simple/moleculekit/)
2024-06-17T15:44:12,107   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.1.4-py3-none-any.whl#sha256=5784491ff294e145a00311f8239aaa0b92c12605db0508ee3e10469b80d4cadd (from https://www.piwheels.org/simple/moleculekit/)
2024-06-17T15:44:12,107 Skipping link: not a file: https://www.piwheels.org/simple/moleculekit/
2024-06-17T15:44:12,108 Skipping link: not a file: https://pypi.org/simple/moleculekit/
2024-06-17T15:44:12,148 Given no hashes to check 1 links for project 'moleculekit': discarding no candidates
2024-06-17T15:44:12,168 Collecting moleculekit==1.8.34
2024-06-17T15:44:12,171   Created temporary directory: /tmp/pip-unpack-pdkepn9p
2024-06-17T15:44:12,654   Downloading moleculekit-1.8.34.tar.gz (6.8 MB)
2024-06-17T15:44:16,093   Added moleculekit==1.8.34 from https://files.pythonhosted.org/packages/d4/0f/1b1f0d41c3ff855afca374140213f1c43b3a9659eebc4460899fead843ff/moleculekit-1.8.34.tar.gz to build tracker '/tmp/pip-build-tracker-d12q7u5s'
2024-06-17T15:44:16,102   Created temporary directory: /tmp/pip-build-env-f6ac6bbc
2024-06-17T15:44:16,107   Installing build dependencies: started
2024-06-17T15:44:16,108   Running command pip subprocess to install build dependencies
2024-06-17T15:44:17,250   Using pip 24.0 from /usr/local/lib/python3.11/dist-packages/pip (python 3.11)
2024-06-17T15:44:17,795   Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2024-06-17T15:44:19,283   Collecting setuptools
2024-06-17T15:44:19,298     Using cached https://www.piwheels.org/simple/setuptools/setuptools-70.0.0-py3-none-any.whl (863 kB)
2024-06-17T15:44:20,120     Link requires a different Python (3.11.2 not in: '>=3.7,<3.11'): https://files.pythonhosted.org/packages/3a/be/650f9c091ef71cb01d735775d554e068752d3ff63d7943b26316dc401749/numpy-1.21.2.zip (from https://pypi.org/simple/numpy/) (requires-python:>=3.7,<3.11)
2024-06-17T15:44:20,123     Link requires a different Python (3.11.2 not in: '>=3.7,<3.11'): https://files.pythonhosted.org/packages/5f/d6/ad58ded26556eaeaa8c971e08b6466f17c4ac4d786cd3d800e26ce59cc01/numpy-1.21.3.zip (from https://pypi.org/simple/numpy/) (requires-python:>=3.7,<3.11)
2024-06-17T15:44:20,126     Link requires a different Python (3.11.2 not in: '>=3.7,<3.11'): https://files.pythonhosted.org/packages/fb/48/b0708ebd7718a8933f0d3937513ef8ef2f4f04529f1f66ca86d873043921/numpy-1.21.4.zip (from https://pypi.org/simple/numpy/) (requires-python:>=3.7,<3.11)
2024-06-17T15:44:20,130     Link requires a different Python (3.11.2 not in: '>=3.7,<3.11'): https://files.pythonhosted.org/packages/c2/a8/a924a09492bdfee8c2ec3094d0a13f2799800b4fdc9c890738aeeb12c72e/numpy-1.21.5.zip (from https://pypi.org/simple/numpy/) (requires-python:>=3.7,<3.11)
2024-06-17T15:44:20,133     Link requires a different Python (3.11.2 not in: '>=3.7,<3.11'): https://files.pythonhosted.org/packages/45/b7/de7b8e67f2232c26af57c205aaad29fe17754f793404f59c8a730c7a191a/numpy-1.21.6.zip (from https://pypi.org/simple/numpy/) (requires-python:>=3.7,<3.11)
2024-06-17T15:44:20,645   Collecting numpy>=1.18.5
2024-06-17T15:44:20,656     Downloading https://www.piwheels.org/simple/numpy/numpy-1.26.4-cp311-cp311-linux_armv7l.whl (5.6 MB)
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2024-06-17T15:44:26,895   Collecting toml
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2024-06-17T15:44:27,007   Collecting versioneer==0.28 (from versioneer[toml]==0.28)
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2024-06-17T15:44:29,721   Installing collected packages: versioneer, toml, setuptools, numpy, Cython
2024-06-17T15:44:29,796     Creating /tmp/pip-build-env-f6ac6bbc/overlay/local/bin
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2024-06-17T15:44:46,954     changing mode of /tmp/pip-build-env-f6ac6bbc/overlay/local/bin/cythonize to 755
2024-06-17T15:44:47,211   Successfully installed Cython-3.0.10 numpy-1.26.4 setuptools-70.0.0 toml-0.10.2 versioneer-0.28
2024-06-17T15:44:48,286   Installing build dependencies: finished with status 'done'
2024-06-17T15:44:48,292   Getting requirements to build wheel: started
2024-06-17T15:44:48,293   Running command Getting requirements to build wheel
2024-06-17T15:45:26,665   warning: moleculekit/wrapping/wrapping.pyx:47:4: Unreachable code
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2024-06-17T15:45:35,802   Compiling moleculekit/atomselect_utils/atomselect_utils.pyx because it depends on /tmp/pip-build-env-f6ac6bbc/overlay/local/lib/python3.11/dist-packages/Cython/Includes/libcpp/vector.pxd.
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2024-06-17T15:45:35,804   Compiling moleculekit/occupancy_utils/occupancy_utils.pyx because it depends on /tmp/pip-build-env-f6ac6bbc/overlay/local/lib/python3.11/dist-packages/Cython/Includes/libcpp/vector.pxd.
2024-06-17T15:45:35,805   Compiling moleculekit/cython_utils/cython_utils.pyx because it depends on /tmp/pip-build-env-f6ac6bbc/overlay/local/lib/python3.11/dist-packages/Cython/Includes/libcpp/vector.pxd.
2024-06-17T15:45:35,805   Compiling moleculekit/fileformats/xtc/xtc.pyx because it depends on /tmp/pip-build-env-f6ac6bbc/overlay/local/lib/python3.11/dist-packages/Cython/Includes/libc/string.pxd.
2024-06-17T15:45:35,807   Compiling moleculekit/fileformats/xtc/trr.pyx because it depends on /tmp/pip-build-env-f6ac6bbc/overlay/local/lib/python3.11/dist-packages/Cython/Includes/libc/string.pxd.
2024-06-17T15:45:35,807   Compiling moleculekit/fileformats/dcd/dcd.pyx because it depends on /tmp/pip-build-env-f6ac6bbc/overlay/local/lib/python3.11/dist-packages/Cython/Includes/libc/string.pxd.
2024-06-17T15:45:35,808   Compiling moleculekit/fileformats/binpos/binpos.pyx because it depends on /tmp/pip-build-env-f6ac6bbc/overlay/local/lib/python3.11/dist-packages/Cython/Includes/libc/string.pxd.
2024-06-17T15:45:35,808   Compiling moleculekit/tmalign/tmalign_util.pyx because it depends on /tmp/pip-build-env-f6ac6bbc/overlay/local/lib/python3.11/dist-packages/Cython/Includes/libcpp/vector.pxd.
2024-06-17T15:45:35,809   [ 1/15] Cythonizing moleculekit/atomselect_utils/atomselect_utils.pyx
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2024-06-17T15:45:38,161   running egg_info
2024-06-17T15:45:38,167   writing moleculekit.egg-info/PKG-INFO
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2024-06-17T15:45:38,255   dependency /tmp/pip-build-env-f6ac6bbc/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-06-17T15:45:38,255   reading manifest file 'moleculekit.egg-info/SOURCES.txt'
2024-06-17T15:45:38,286   reading manifest template 'MANIFEST.in'
2024-06-17T15:45:38,631   no previously-included directories found matching 'moleculekit/test-data'
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2024-06-17T15:45:38,635   adding license file 'LICENSE'
2024-06-17T15:45:38,651   writing manifest file 'moleculekit.egg-info/SOURCES.txt'
2024-06-17T15:45:40,390   Getting requirements to build wheel: finished with status 'done'
2024-06-17T15:45:40,404   Installing backend dependencies: started
2024-06-17T15:45:40,405   Running command pip subprocess to install backend dependencies
2024-06-17T15:45:41,723   Using pip 24.0 from /usr/local/lib/python3.11/dist-packages/pip (python 3.11)
2024-06-17T15:45:42,606   Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2024-06-17T15:45:43,354   Collecting wheel
2024-06-17T15:45:43,369     Using cached https://www.piwheels.org/simple/wheel/wheel-0.43.0-py3-none-any.whl (65 kB)
2024-06-17T15:45:46,138   Installing collected packages: wheel
2024-06-17T15:45:46,381     Creating /tmp/pip-build-env-f6ac6bbc/normal/local/bin
2024-06-17T15:45:46,383     changing mode of /tmp/pip-build-env-f6ac6bbc/normal/local/bin/wheel to 755
2024-06-17T15:45:46,396   Successfully installed wheel-0.43.0
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2024-06-17T15:45:47,586   Created temporary directory: /tmp/pip-modern-metadata-6_vbctt_
2024-06-17T15:45:47,589   Preparing metadata (pyproject.toml): started
2024-06-17T15:45:47,590   Running command Preparing metadata (pyproject.toml)
2024-06-17T15:45:50,107   running dist_info
2024-06-17T15:45:50,109   creating /tmp/pip-modern-metadata-6_vbctt_/moleculekit.egg-info
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2024-06-17T15:45:50,170   dependency /tmp/pip-build-env-f6ac6bbc/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-06-17T15:45:50,171   dependency /tmp/pip-build-env-f6ac6bbc/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-06-17T15:45:50,171   dependency /tmp/pip-build-env-f6ac6bbc/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
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2024-06-17T15:45:50,173   dependency /tmp/pip-build-env-f6ac6bbc/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-06-17T15:45:50,174   dependency /tmp/pip-build-env-f6ac6bbc/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-06-17T15:45:50,174   dependency /tmp/pip-build-env-f6ac6bbc/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
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2024-06-17T15:45:50,176   dependency /tmp/pip-build-env-f6ac6bbc/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-06-17T15:45:50,176   dependency /tmp/pip-build-env-f6ac6bbc/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-06-17T15:45:50,176   dependency /tmp/pip-build-env-f6ac6bbc/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
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2024-06-17T15:45:50,178   dependency /tmp/pip-build-env-f6ac6bbc/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-06-17T15:45:50,178   dependency /tmp/pip-build-env-f6ac6bbc/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
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2024-06-17T15:45:50,181   dependency /tmp/pip-build-env-f6ac6bbc/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
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2024-06-17T15:45:50,188   dependency /tmp/pip-build-env-f6ac6bbc/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
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2024-06-17T15:45:50,190   dependency /tmp/pip-build-env-f6ac6bbc/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-06-17T15:45:50,190   dependency /tmp/pip-build-env-f6ac6bbc/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-06-17T15:45:50,191   dependency /tmp/pip-build-env-f6ac6bbc/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-06-17T15:45:50,191   dependency /tmp/pip-build-env-f6ac6bbc/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-06-17T15:45:50,192   reading manifest file '/tmp/pip-modern-metadata-6_vbctt_/moleculekit.egg-info/SOURCES.txt'
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2024-06-17T15:45:50,483   no previously-included directories found matching 'moleculekit/test-data'
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2024-06-17T15:45:50,485   adding license file 'LICENSE'
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2024-06-17T15:45:50,504   creating '/tmp/pip-modern-metadata-6_vbctt_/moleculekit-1.8.34.dist-info'
2024-06-17T15:45:50,753   Preparing metadata (pyproject.toml): finished with status 'done'
2024-06-17T15:45:50,758   Source in /tmp/pip-wheel-hzlkdb1s/moleculekit_a33cfd24e93b48ff9966393dfea525c9 has version 1.8.34, which satisfies requirement moleculekit==1.8.34 from https://files.pythonhosted.org/packages/d4/0f/1b1f0d41c3ff855afca374140213f1c43b3a9659eebc4460899fead843ff/moleculekit-1.8.34.tar.gz
2024-06-17T15:45:50,759   Removed moleculekit==1.8.34 from https://files.pythonhosted.org/packages/d4/0f/1b1f0d41c3ff855afca374140213f1c43b3a9659eebc4460899fead843ff/moleculekit-1.8.34.tar.gz from build tracker '/tmp/pip-build-tracker-d12q7u5s'
2024-06-17T15:45:50,764 Created temporary directory: /tmp/pip-unpack-sy8pcdaz
2024-06-17T15:45:50,766 Created temporary directory: /tmp/pip-unpack-qe3qcz6r
2024-06-17T15:45:50,774 Building wheels for collected packages: moleculekit
2024-06-17T15:45:50,778   Created temporary directory: /tmp/pip-wheel-265rkmtl
2024-06-17T15:45:50,779   Destination directory: /tmp/pip-wheel-265rkmtl
2024-06-17T15:45:50,781   Building wheel for moleculekit (pyproject.toml): started
2024-06-17T15:45:50,783   Running command Building wheel for moleculekit (pyproject.toml)
2024-06-17T15:45:53,722   running bdist_wheel
2024-06-17T15:45:53,742   running build
2024-06-17T15:45:53,743   running build_py
2024-06-17T15:45:53,752   creating build
2024-06-17T15:45:53,753   creating build/lib.linux-armv7l-cpython-311
2024-06-17T15:45:53,754   creating build/lib.linux-armv7l-cpython-311/moleculekit
2024-06-17T15:45:53,756   copying moleculekit/pymolgraphics.py -> build/lib.linux-armv7l-cpython-311/moleculekit
2024-06-17T15:45:53,758   copying moleculekit/periodictable.py -> build/lib.linux-armv7l-cpython-311/moleculekit
2024-06-17T15:45:53,763   copying moleculekit/rdkitintegration.py -> build/lib.linux-armv7l-cpython-311/moleculekit
2024-06-17T15:45:53,766   copying moleculekit/_version.py -> build/lib.linux-armv7l-cpython-311/moleculekit
2024-06-17T15:45:53,769   copying moleculekit/molecule.py -> build/lib.linux-armv7l-cpython-311/moleculekit
2024-06-17T15:45:53,786   copying moleculekit/vmdgraphics.py -> build/lib.linux-armv7l-cpython-311/moleculekit
2024-06-17T15:45:53,789   copying moleculekit/version.py -> build/lib.linux-armv7l-cpython-311/moleculekit
2024-06-17T15:45:53,791   copying moleculekit/home.py -> build/lib.linux-armv7l-cpython-311/moleculekit
2024-06-17T15:45:53,794   copying moleculekit/rcsb.py -> build/lib.linux-armv7l-cpython-311/moleculekit
2024-06-17T15:45:53,796   copying moleculekit/align.py -> build/lib.linux-armv7l-cpython-311/moleculekit
2024-06-17T15:45:53,799   copying moleculekit/viewer.py -> build/lib.linux-armv7l-cpython-311/moleculekit
2024-06-17T15:45:53,802   copying moleculekit/__init__.py -> build/lib.linux-armv7l-cpython-311/moleculekit
2024-06-17T15:45:53,804   copying moleculekit/readers.py -> build/lib.linux-armv7l-cpython-311/moleculekit
2024-06-17T15:45:53,809   copying moleculekit/writers.py -> build/lib.linux-armv7l-cpython-311/moleculekit
2024-06-17T15:45:53,812   copying moleculekit/config.py -> build/lib.linux-armv7l-cpython-311/moleculekit
2024-06-17T15:45:53,814   copying moleculekit/bondguesser.py -> build/lib.linux-armv7l-cpython-311/moleculekit
2024-06-17T15:45:53,816   copying moleculekit/opm.py -> build/lib.linux-armv7l-cpython-311/moleculekit
2024-06-17T15:45:53,819   copying moleculekit/dihedral.py -> build/lib.linux-armv7l-cpython-311/moleculekit
2024-06-17T15:45:53,820   copying moleculekit/distance.py -> build/lib.linux-armv7l-cpython-311/moleculekit
2024-06-17T15:45:53,823   copying moleculekit/vmdviewer.py -> build/lib.linux-armv7l-cpython-311/moleculekit
2024-06-17T15:45:53,825   copying moleculekit/util.py -> build/lib.linux-armv7l-cpython-311/moleculekit
2024-06-17T15:45:53,829   creating build/lib.linux-armv7l-cpython-311/moleculekit/tools
2024-06-17T15:45:53,830   copying moleculekit/tools/atomtyper.py -> build/lib.linux-armv7l-cpython-311/moleculekit/tools
2024-06-17T15:45:53,833   copying moleculekit/tools/preparation.py -> build/lib.linux-armv7l-cpython-311/moleculekit/tools
2024-06-17T15:45:53,836   copying moleculekit/tools/voxeldescriptors.py -> build/lib.linux-armv7l-cpython-311/moleculekit/tools
2024-06-17T15:45:53,839   copying moleculekit/tools/moleculechecks.py -> build/lib.linux-armv7l-cpython-311/moleculekit/tools
2024-06-17T15:45:53,841   copying moleculekit/tools/docking.py -> build/lib.linux-armv7l-cpython-311/moleculekit/tools
2024-06-17T15:45:53,843   copying moleculekit/tools/modelling.py -> build/lib.linux-armv7l-cpython-311/moleculekit/tools
2024-06-17T15:45:53,845   copying moleculekit/tools/hhblitsprofile.py -> build/lib.linux-armv7l-cpython-311/moleculekit/tools
2024-06-17T15:45:53,847   copying moleculekit/tools/__init__.py -> build/lib.linux-armv7l-cpython-311/moleculekit/tools
2024-06-17T15:45:53,849   copying moleculekit/tools/preparation_customres.py -> build/lib.linux-armv7l-cpython-311/moleculekit/tools
2024-06-17T15:45:53,851   copying moleculekit/tools/sequencestructuralalignment.py -> build/lib.linux-armv7l-cpython-311/moleculekit/tools
2024-06-17T15:45:53,854   copying moleculekit/tools/autosegment.py -> build/lib.linux-armv7l-cpython-311/moleculekit/tools
2024-06-17T15:45:53,857   copying moleculekit/tools/detect.py -> build/lib.linux-armv7l-cpython-311/moleculekit/tools
2024-06-17T15:45:53,860   copying moleculekit/tools/graphalignment.py -> build/lib.linux-armv7l-cpython-311/moleculekit/tools
2024-06-17T15:45:53,862   copying moleculekit/tools/crystalpacking.py -> build/lib.linux-armv7l-cpython-311/moleculekit/tools
2024-06-17T15:45:53,865   creating build/lib.linux-armv7l-cpython-311/moleculekit/pdbx
2024-06-17T15:45:53,866   copying moleculekit/pdbx/__init__.py -> build/lib.linux-armv7l-cpython-311/moleculekit/pdbx
2024-06-17T15:45:53,868   creating build/lib.linux-armv7l-cpython-311/moleculekit/smallmol
2024-06-17T15:45:53,868   copying moleculekit/smallmol/test_smallmol.py -> build/lib.linux-armv7l-cpython-311/moleculekit/smallmol
2024-06-17T15:45:53,871   copying moleculekit/smallmol/smallmolcdp.py -> build/lib.linux-armv7l-cpython-311/moleculekit/smallmol
2024-06-17T15:45:53,873   copying moleculekit/smallmol/test_smallmollib.py -> build/lib.linux-armv7l-cpython-311/moleculekit/smallmol
2024-06-17T15:45:53,875   copying moleculekit/smallmol/__init__.py -> build/lib.linux-armv7l-cpython-311/moleculekit/smallmol
2024-06-17T15:45:53,877   copying moleculekit/smallmol/smallmollib.py -> build/lib.linux-armv7l-cpython-311/moleculekit/smallmol
2024-06-17T15:45:53,880   copying moleculekit/smallmol/util.py -> build/lib.linux-armv7l-cpython-311/moleculekit/smallmol
2024-06-17T15:45:53,883   copying moleculekit/smallmol/smallmol.py -> build/lib.linux-armv7l-cpython-311/moleculekit/smallmol
2024-06-17T15:45:53,886   creating build/lib.linux-armv7l-cpython-311/moleculekit/interactions
2024-06-17T15:45:53,887   copying moleculekit/interactions/__init__.py -> build/lib.linux-armv7l-cpython-311/moleculekit/interactions
2024-06-17T15:45:53,889   copying moleculekit/interactions/interactions.py -> build/lib.linux-armv7l-cpython-311/moleculekit/interactions
2024-06-17T15:45:53,892   creating build/lib.linux-armv7l-cpython-311/moleculekit/atomselect
2024-06-17T15:45:53,893   copying moleculekit/atomselect/__init__.py -> build/lib.linux-armv7l-cpython-311/moleculekit/atomselect
2024-06-17T15:45:53,895   copying moleculekit/atomselect/atomselect.py -> build/lib.linux-armv7l-cpython-311/moleculekit/atomselect
2024-06-17T15:45:53,897   copying moleculekit/atomselect/languageparser.py -> build/lib.linux-armv7l-cpython-311/moleculekit/atomselect
2024-06-17T15:45:53,900   copying moleculekit/atomselect/analyze.py -> build/lib.linux-armv7l-cpython-311/moleculekit/atomselect
2024-06-17T15:45:53,903   creating build/lib.linux-armv7l-cpython-311/moleculekit/projections
2024-06-17T15:45:53,904   copying moleculekit/projections/metricsasa.py -> build/lib.linux-armv7l-cpython-311/moleculekit/projections
2024-06-17T15:45:53,907   copying moleculekit/projections/metricsecondarystructure.py -> build/lib.linux-armv7l-cpython-311/moleculekit/projections
2024-06-17T15:45:53,909   copying moleculekit/projections/metricplumed2.py -> build/lib.linux-armv7l-cpython-311/moleculekit/projections
2024-06-17T15:45:53,912   copying moleculekit/projections/metriccoordinate.py -> build/lib.linux-armv7l-cpython-311/moleculekit/projections
2024-06-17T15:45:53,914   copying moleculekit/projections/metricdihedral.py -> build/lib.linux-armv7l-cpython-311/moleculekit/projections
2024-06-17T15:45:53,917   copying moleculekit/projections/metricsphericalcoordinate.py -> build/lib.linux-armv7l-cpython-311/moleculekit/projections
2024-06-17T15:45:53,920   copying moleculekit/projections/__init__.py -> build/lib.linux-armv7l-cpython-311/moleculekit/projections
2024-06-17T15:45:53,921   copying moleculekit/projections/metricshell.py -> build/lib.linux-armv7l-cpython-311/moleculekit/projections
2024-06-17T15:45:53,924   copying moleculekit/projections/metricgyration.py -> build/lib.linux-armv7l-cpython-311/moleculekit/projections
2024-06-17T15:45:53,926   copying moleculekit/projections/metricdistance.py -> build/lib.linux-armv7l-cpython-311/moleculekit/projections
2024-06-17T15:45:53,929   copying moleculekit/projections/metrictmscore.py -> build/lib.linux-armv7l-cpython-311/moleculekit/projections
2024-06-17T15:45:53,932   copying moleculekit/projections/metricrmsd.py -> build/lib.linux-armv7l-cpython-311/moleculekit/projections
2024-06-17T15:45:53,934   copying moleculekit/projections/projection.py -> build/lib.linux-armv7l-cpython-311/moleculekit/projections
2024-06-17T15:45:53,936   copying moleculekit/projections/metricfluctuation.py -> build/lib.linux-armv7l-cpython-311/moleculekit/projections
2024-06-17T15:45:53,939   copying moleculekit/projections/util.py -> build/lib.linux-armv7l-cpython-311/moleculekit/projections
2024-06-17T15:45:53,941   creating build/lib.linux-armv7l-cpython-311/moleculekit/ply
2024-06-17T15:45:53,942   copying moleculekit/ply/yacc.py -> build/lib.linux-armv7l-cpython-311/moleculekit/ply
2024-06-17T15:45:53,947   copying moleculekit/ply/__init__.py -> build/lib.linux-armv7l-cpython-311/moleculekit/ply
2024-06-17T15:45:53,949   copying moleculekit/ply/lex.py -> build/lib.linux-armv7l-cpython-311/moleculekit/ply
2024-06-17T15:45:53,952   creating build/lib.linux-armv7l-cpython-311/moleculekit/fileformats
2024-06-17T15:45:53,953   copying moleculekit/fileformats/utils.py -> build/lib.linux-armv7l-cpython-311/moleculekit/fileformats
2024-06-17T15:45:53,955   copying moleculekit/fileformats/__init__.py -> build/lib.linux-armv7l-cpython-311/moleculekit/fileformats
2024-06-17T15:45:53,956   copying moleculekit/fileformats/netcdf.py -> build/lib.linux-armv7l-cpython-311/moleculekit/fileformats
2024-06-17T15:45:53,960   creating build/lib.linux-armv7l-cpython-311/moleculekit/tools/obabel_tools
2024-06-17T15:45:53,961   copying moleculekit/tools/obabel_tools/obabel_cli.py -> build/lib.linux-armv7l-cpython-311/moleculekit/tools/obabel_tools
2024-06-17T15:45:53,963   copying moleculekit/tools/obabel_tools/__init__.py -> build/lib.linux-armv7l-cpython-311/moleculekit/tools/obabel_tools
2024-06-17T15:45:53,965   creating build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/writer
2024-06-17T15:45:53,966   copying moleculekit/pdbx/writer/PdbxWriter.py -> build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/writer
2024-06-17T15:45:53,969   copying moleculekit/pdbx/writer/__init__.py -> build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/writer
2024-06-17T15:45:53,971   creating build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/tests
2024-06-17T15:45:53,972   copying moleculekit/pdbx/tests/PdbxWriterTests.py -> build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/tests
2024-06-17T15:45:53,974   copying moleculekit/pdbx/tests/PdbxReadWriteTests.py -> build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/tests
2024-06-17T15:45:53,976   copying moleculekit/pdbx/tests/__init__.py -> build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/tests
2024-06-17T15:45:53,978   copying moleculekit/pdbx/tests/PdbxReaderTests.py -> build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/tests
2024-06-17T15:45:53,981   creating build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/reader
2024-06-17T15:45:53,981   copying moleculekit/pdbx/reader/__init__.py -> build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/reader
2024-06-17T15:45:53,983   copying moleculekit/pdbx/reader/PdbxReader.py -> build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/reader
2024-06-17T15:45:53,986   copying moleculekit/pdbx/reader/PdbxParser.py -> build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/reader
2024-06-17T15:45:53,988   copying moleculekit/pdbx/reader/PdbxContainers.py -> build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/reader
2024-06-17T15:45:53,992   creating build/lib.linux-armv7l-cpython-311/moleculekit/smallmol/tools
2024-06-17T15:45:53,993   copying moleculekit/smallmol/tools/__init__.py -> build/lib.linux-armv7l-cpython-311/moleculekit/smallmol/tools
2024-06-17T15:45:53,995   copying moleculekit/smallmol/tools/test_tools.py -> build/lib.linux-armv7l-cpython-311/moleculekit/smallmol/tools
2024-06-17T15:45:53,998   copying moleculekit/smallmol/tools/restrainedembed.py -> build/lib.linux-armv7l-cpython-311/moleculekit/smallmol/tools
2024-06-17T15:45:53,999   copying moleculekit/smallmol/tools/clustering.py -> build/lib.linux-armv7l-cpython-311/moleculekit/smallmol/tools
2024-06-17T15:45:54,002   running egg_info
2024-06-17T15:45:54,006   writing moleculekit.egg-info/PKG-INFO
2024-06-17T15:45:54,009   writing dependency_links to moleculekit.egg-info/dependency_links.txt
2024-06-17T15:45:54,011   writing requirements to moleculekit.egg-info/requires.txt
2024-06-17T15:45:54,012   writing top-level names to moleculekit.egg-info/top_level.txt
2024-06-17T15:45:54,030   dependency /tmp/pip-build-env-f6ac6bbc/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-06-17T15:45:54,031   dependency /tmp/pip-build-env-f6ac6bbc/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-06-17T15:45:54,031   dependency /tmp/pip-build-env-f6ac6bbc/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-06-17T15:45:54,032   dependency /tmp/pip-build-env-f6ac6bbc/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-06-17T15:45:54,032   dependency /tmp/pip-build-env-f6ac6bbc/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-06-17T15:45:54,033   dependency /tmp/pip-build-env-f6ac6bbc/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-06-17T15:45:54,033   dependency /tmp/pip-build-env-f6ac6bbc/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-06-17T15:45:54,034   dependency /tmp/pip-build-env-f6ac6bbc/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-06-17T15:45:54,034   dependency /tmp/pip-build-env-f6ac6bbc/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-06-17T15:45:54,035   dependency /tmp/pip-build-env-f6ac6bbc/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-06-17T15:45:54,035   dependency /tmp/pip-build-env-f6ac6bbc/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-06-17T15:45:54,036   dependency /tmp/pip-build-env-f6ac6bbc/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-06-17T15:45:54,036   dependency /tmp/pip-build-env-f6ac6bbc/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-06-17T15:45:54,037   dependency /tmp/pip-build-env-f6ac6bbc/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-06-17T15:45:54,037   dependency /tmp/pip-build-env-f6ac6bbc/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-06-17T15:45:54,038   dependency /tmp/pip-build-env-f6ac6bbc/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-06-17T15:45:54,039   dependency /tmp/pip-build-env-f6ac6bbc/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-06-17T15:45:54,039   dependency /tmp/pip-build-env-f6ac6bbc/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-06-17T15:45:54,040   dependency /tmp/pip-build-env-f6ac6bbc/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-06-17T15:45:54,040   dependency /tmp/pip-build-env-f6ac6bbc/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-06-17T15:45:54,041   dependency /tmp/pip-build-env-f6ac6bbc/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-06-17T15:45:54,041   dependency /tmp/pip-build-env-f6ac6bbc/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-06-17T15:45:54,042   dependency /tmp/pip-build-env-f6ac6bbc/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-06-17T15:45:54,042   dependency /tmp/pip-build-env-f6ac6bbc/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-06-17T15:45:54,043   dependency /tmp/pip-build-env-f6ac6bbc/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-06-17T15:45:54,043   dependency /tmp/pip-build-env-f6ac6bbc/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-06-17T15:45:54,044   dependency /tmp/pip-build-env-f6ac6bbc/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-06-17T15:45:54,045   dependency /tmp/pip-build-env-f6ac6bbc/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-06-17T15:45:54,045   dependency /tmp/pip-build-env-f6ac6bbc/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-06-17T15:45:54,046   dependency /tmp/pip-build-env-f6ac6bbc/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-06-17T15:45:54,047   dependency /tmp/pip-build-env-f6ac6bbc/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-06-17T15:45:54,047   dependency /tmp/pip-build-env-f6ac6bbc/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-06-17T15:45:54,048   dependency /tmp/pip-build-env-f6ac6bbc/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-06-17T15:45:54,048   dependency /tmp/pip-build-env-f6ac6bbc/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-06-17T15:45:54,049   dependency /tmp/pip-build-env-f6ac6bbc/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-06-17T15:45:54,049   dependency /tmp/pip-build-env-f6ac6bbc/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-06-17T15:45:54,050   dependency /tmp/pip-build-env-f6ac6bbc/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-06-17T15:45:54,051   dependency /tmp/pip-build-env-f6ac6bbc/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-06-17T15:45:54,051   dependency /tmp/pip-build-env-f6ac6bbc/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-06-17T15:45:54,051   dependency /tmp/pip-build-env-f6ac6bbc/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-06-17T15:45:54,052   dependency /tmp/pip-build-env-f6ac6bbc/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-06-17T15:45:54,052   dependency /tmp/pip-build-env-f6ac6bbc/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-06-17T15:45:54,053   dependency /tmp/pip-build-env-f6ac6bbc/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-06-17T15:45:54,053   dependency /tmp/pip-build-env-f6ac6bbc/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-06-17T15:45:54,054   dependency /tmp/pip-build-env-f6ac6bbc/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-06-17T15:45:54,054   dependency /tmp/pip-build-env-f6ac6bbc/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-06-17T15:45:54,055   dependency /tmp/pip-build-env-f6ac6bbc/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-06-17T15:45:54,055   dependency /tmp/pip-build-env-f6ac6bbc/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-06-17T15:45:54,056   dependency /tmp/pip-build-env-f6ac6bbc/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-06-17T15:45:54,056   dependency /tmp/pip-build-env-f6ac6bbc/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-06-17T15:45:54,057   dependency /tmp/pip-build-env-f6ac6bbc/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-06-17T15:45:54,058   dependency /tmp/pip-build-env-f6ac6bbc/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-06-17T15:45:54,058   dependency /tmp/pip-build-env-f6ac6bbc/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-06-17T15:45:54,059   dependency /tmp/pip-build-env-f6ac6bbc/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-06-17T15:45:54,059   dependency /tmp/pip-build-env-f6ac6bbc/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-06-17T15:45:54,060   dependency /tmp/pip-build-env-f6ac6bbc/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-06-17T15:45:54,060   dependency /tmp/pip-build-env-f6ac6bbc/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-06-17T15:45:54,061   dependency /tmp/pip-build-env-f6ac6bbc/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-06-17T15:45:54,061   dependency /tmp/pip-build-env-f6ac6bbc/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-06-17T15:45:54,062   dependency /tmp/pip-build-env-f6ac6bbc/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-06-17T15:45:54,062   dependency /tmp/pip-build-env-f6ac6bbc/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-06-17T15:45:54,062   dependency /tmp/pip-build-env-f6ac6bbc/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-06-17T15:45:54,063   dependency /tmp/pip-build-env-f6ac6bbc/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-06-17T15:45:54,063   dependency /tmp/pip-build-env-f6ac6bbc/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-06-17T15:45:54,064   dependency /tmp/pip-build-env-f6ac6bbc/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-06-17T15:45:54,064   dependency /tmp/pip-build-env-f6ac6bbc/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-06-17T15:45:54,065   dependency /tmp/pip-build-env-f6ac6bbc/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-06-17T15:45:54,065   dependency /tmp/pip-build-env-f6ac6bbc/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-06-17T15:45:54,066   dependency /tmp/pip-build-env-f6ac6bbc/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-06-17T15:45:54,066   dependency /tmp/pip-build-env-f6ac6bbc/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-06-17T15:45:54,067   dependency /tmp/pip-build-env-f6ac6bbc/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-06-17T15:45:54,067   dependency /tmp/pip-build-env-f6ac6bbc/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-06-17T15:45:54,068   dependency /tmp/pip-build-env-f6ac6bbc/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-06-17T15:45:54,068   dependency /tmp/pip-build-env-f6ac6bbc/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-06-17T15:45:54,069   dependency /tmp/pip-build-env-f6ac6bbc/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-06-17T15:45:54,070   reading manifest file 'moleculekit.egg-info/SOURCES.txt'
2024-06-17T15:45:54,070   reading manifest template 'MANIFEST.in'
2024-06-17T15:45:54,341   no previously-included directories found matching 'moleculekit/test-data'
2024-06-17T15:45:54,343   no previously-included directories found matching 'moleculekit/tests'
2024-06-17T15:45:54,344   no previously-included directories found matching 'package'
2024-06-17T15:45:54,344   adding license file 'LICENSE'
2024-06-17T15:45:54,359   writing manifest file 'moleculekit.egg-info/SOURCES.txt'
2024-06-17T15:45:54,369   /tmp/pip-build-env-f6ac6bbc/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.atomselect_utils' is absent from the `packages` configuration.
2024-06-17T15:45:54,369   !!

2024-06-17T15:45:54,370           ********************************************************************************
2024-06-17T15:45:54,371           ############################
2024-06-17T15:45:54,371           # Package would be ignored #
2024-06-17T15:45:54,372           ############################
2024-06-17T15:45:54,373           Python recognizes 'moleculekit.atomselect_utils' as an importable package[^1],
2024-06-17T15:45:54,373           but it is absent from setuptools' `packages` configuration.

2024-06-17T15:45:54,374           This leads to an ambiguous overall configuration. If you want to distribute this
2024-06-17T15:45:54,375           package, please make sure that 'moleculekit.atomselect_utils' is explicitly added
2024-06-17T15:45:54,375           to the `packages` configuration field.

2024-06-17T15:45:54,377           Alternatively, you can also rely on setuptools' discovery methods
2024-06-17T15:45:54,377           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-06-17T15:45:54,378           instead of `find_packages(...)`/`find:`).

2024-06-17T15:45:54,379           You can read more about "package discovery" on setuptools documentation page:

2024-06-17T15:45:54,380           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-06-17T15:45:54,381           If you don't want 'moleculekit.atomselect_utils' to be distributed and are
2024-06-17T15:45:54,381           already explicitly excluding 'moleculekit.atomselect_utils' via
2024-06-17T15:45:54,382           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-06-17T15:45:54,382           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-06-17T15:45:54,383           combination with a more fine grained `package-data` configuration.

2024-06-17T15:45:54,384           You can read more about "package data files" on setuptools documentation page:

2024-06-17T15:45:54,385           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-06-17T15:45:54,386           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-06-17T15:45:54,387                 even if it does not contain any `.py` files.
2024-06-17T15:45:54,387                 On the other hand, currently there is no concept of package data
2024-06-17T15:45:54,388                 directory, all directories are treated like packages.
2024-06-17T15:45:54,388           ********************************************************************************

2024-06-17T15:45:54,389   !!
2024-06-17T15:45:54,390     check.warn(importable)
2024-06-17T15:45:54,391   /tmp/pip-build-env-f6ac6bbc/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.bondguesser_utils' is absent from the `packages` configuration.
2024-06-17T15:45:54,391   !!

2024-06-17T15:45:54,393           ********************************************************************************
2024-06-17T15:45:54,393           ############################
2024-06-17T15:45:54,393           # Package would be ignored #
2024-06-17T15:45:54,394           ############################
2024-06-17T15:45:54,394           Python recognizes 'moleculekit.bondguesser_utils' as an importable package[^1],
2024-06-17T15:45:54,394           but it is absent from setuptools' `packages` configuration.

2024-06-17T15:45:54,395           This leads to an ambiguous overall configuration. If you want to distribute this
2024-06-17T15:45:54,395           package, please make sure that 'moleculekit.bondguesser_utils' is explicitly added
2024-06-17T15:45:54,396           to the `packages` configuration field.

2024-06-17T15:45:54,397           Alternatively, you can also rely on setuptools' discovery methods
2024-06-17T15:45:54,397           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-06-17T15:45:54,397           instead of `find_packages(...)`/`find:`).

2024-06-17T15:45:54,398           You can read more about "package discovery" on setuptools documentation page:

2024-06-17T15:45:54,399           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-06-17T15:45:54,400           If you don't want 'moleculekit.bondguesser_utils' to be distributed and are
2024-06-17T15:45:54,400           already explicitly excluding 'moleculekit.bondguesser_utils' via
2024-06-17T15:45:54,400           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-06-17T15:45:54,401           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-06-17T15:45:54,401           combination with a more fine grained `package-data` configuration.

2024-06-17T15:45:54,402           You can read more about "package data files" on setuptools documentation page:

2024-06-17T15:45:54,403           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-06-17T15:45:54,405           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-06-17T15:45:54,405                 even if it does not contain any `.py` files.
2024-06-17T15:45:54,406                 On the other hand, currently there is no concept of package data
2024-06-17T15:45:54,407                 directory, all directories are treated like packages.
2024-06-17T15:45:54,407           ********************************************************************************

2024-06-17T15:45:54,408   !!
2024-06-17T15:45:54,409     check.warn(importable)
2024-06-17T15:45:54,409   /tmp/pip-build-env-f6ac6bbc/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.cython_utils' is absent from the `packages` configuration.
2024-06-17T15:45:54,409   !!

2024-06-17T15:45:54,410           ********************************************************************************
2024-06-17T15:45:54,411           ############################
2024-06-17T15:45:54,411           # Package would be ignored #
2024-06-17T15:45:54,412           ############################
2024-06-17T15:45:54,412           Python recognizes 'moleculekit.cython_utils' as an importable package[^1],
2024-06-17T15:45:54,413           but it is absent from setuptools' `packages` configuration.

2024-06-17T15:45:54,414           This leads to an ambiguous overall configuration. If you want to distribute this
2024-06-17T15:45:54,414           package, please make sure that 'moleculekit.cython_utils' is explicitly added
2024-06-17T15:45:54,415           to the `packages` configuration field.

2024-06-17T15:45:54,416           Alternatively, you can also rely on setuptools' discovery methods
2024-06-17T15:45:54,417           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-06-17T15:45:54,417           instead of `find_packages(...)`/`find:`).

2024-06-17T15:45:54,418           You can read more about "package discovery" on setuptools documentation page:

2024-06-17T15:45:54,419           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-06-17T15:45:54,420           If you don't want 'moleculekit.cython_utils' to be distributed and are
2024-06-17T15:45:54,420           already explicitly excluding 'moleculekit.cython_utils' via
2024-06-17T15:45:54,421           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-06-17T15:45:54,421           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-06-17T15:45:54,422           combination with a more fine grained `package-data` configuration.

2024-06-17T15:45:54,423           You can read more about "package data files" on setuptools documentation page:

2024-06-17T15:45:54,423           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-06-17T15:45:54,425           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-06-17T15:45:54,425                 even if it does not contain any `.py` files.
2024-06-17T15:45:54,426                 On the other hand, currently there is no concept of package data
2024-06-17T15:45:54,426                 directory, all directories are treated like packages.
2024-06-17T15:45:54,427           ********************************************************************************

2024-06-17T15:45:54,428   !!
2024-06-17T15:45:54,428     check.warn(importable)
2024-06-17T15:45:54,429   /tmp/pip-build-env-f6ac6bbc/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.distance_utils' is absent from the `packages` configuration.
2024-06-17T15:45:54,429   !!

2024-06-17T15:45:54,430           ********************************************************************************
2024-06-17T15:45:54,430           ############################
2024-06-17T15:45:54,431           # Package would be ignored #
2024-06-17T15:45:54,431           ############################
2024-06-17T15:45:54,432           Python recognizes 'moleculekit.distance_utils' as an importable package[^1],
2024-06-17T15:45:54,432           but it is absent from setuptools' `packages` configuration.

2024-06-17T15:45:54,433           This leads to an ambiguous overall configuration. If you want to distribute this
2024-06-17T15:45:54,434           package, please make sure that 'moleculekit.distance_utils' is explicitly added
2024-06-17T15:45:54,434           to the `packages` configuration field.

2024-06-17T15:45:54,435           Alternatively, you can also rely on setuptools' discovery methods
2024-06-17T15:45:54,436           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-06-17T15:45:54,437           instead of `find_packages(...)`/`find:`).

2024-06-17T15:45:54,438           You can read more about "package discovery" on setuptools documentation page:

2024-06-17T15:45:54,439           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-06-17T15:45:54,440           If you don't want 'moleculekit.distance_utils' to be distributed and are
2024-06-17T15:45:54,440           already explicitly excluding 'moleculekit.distance_utils' via
2024-06-17T15:45:54,440           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-06-17T15:45:54,441           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-06-17T15:45:54,442           combination with a more fine grained `package-data` configuration.

2024-06-17T15:45:54,444           You can read more about "package data files" on setuptools documentation page:

2024-06-17T15:45:54,484           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-06-17T15:45:54,485           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-06-17T15:45:54,486                 even if it does not contain any `.py` files.
2024-06-17T15:45:54,487                 On the other hand, currently there is no concept of package data
2024-06-17T15:45:54,487                 directory, all directories are treated like packages.
2024-06-17T15:45:54,488           ********************************************************************************

2024-06-17T15:45:54,489   !!
2024-06-17T15:45:54,489     check.warn(importable)
2024-06-17T15:45:54,489   /tmp/pip-build-env-f6ac6bbc/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.fileformats.binpos' is absent from the `packages` configuration.
2024-06-17T15:45:54,490   !!

2024-06-17T15:45:54,491           ********************************************************************************
2024-06-17T15:45:54,491           ############################
2024-06-17T15:45:54,491           # Package would be ignored #
2024-06-17T15:45:54,492           ############################
2024-06-17T15:45:54,492           Python recognizes 'moleculekit.fileformats.binpos' as an importable package[^1],
2024-06-17T15:45:54,493           but it is absent from setuptools' `packages` configuration.

2024-06-17T15:45:54,493           This leads to an ambiguous overall configuration. If you want to distribute this
2024-06-17T15:45:54,494           package, please make sure that 'moleculekit.fileformats.binpos' is explicitly added
2024-06-17T15:45:54,494           to the `packages` configuration field.

2024-06-17T15:45:54,495           Alternatively, you can also rely on setuptools' discovery methods
2024-06-17T15:45:54,495           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-06-17T15:45:54,496           instead of `find_packages(...)`/`find:`).

2024-06-17T15:45:54,497           You can read more about "package discovery" on setuptools documentation page:

2024-06-17T15:45:54,498           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-06-17T15:45:54,499           If you don't want 'moleculekit.fileformats.binpos' to be distributed and are
2024-06-17T15:45:54,499           already explicitly excluding 'moleculekit.fileformats.binpos' via
2024-06-17T15:45:54,500           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-06-17T15:45:54,500           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-06-17T15:45:54,501           combination with a more fine grained `package-data` configuration.

2024-06-17T15:45:54,502           You can read more about "package data files" on setuptools documentation page:

2024-06-17T15:45:54,503           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-06-17T15:45:54,504           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-06-17T15:45:54,505                 even if it does not contain any `.py` files.
2024-06-17T15:45:54,505                 On the other hand, currently there is no concept of package data
2024-06-17T15:45:54,506                 directory, all directories are treated like packages.
2024-06-17T15:45:54,506           ********************************************************************************

2024-06-17T15:45:54,507   !!
2024-06-17T15:45:54,508     check.warn(importable)
2024-06-17T15:45:54,508   /tmp/pip-build-env-f6ac6bbc/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.fileformats.binpos.include' is absent from the `packages` configuration.
2024-06-17T15:45:54,509   !!

2024-06-17T15:45:54,510           ********************************************************************************
2024-06-17T15:45:54,510           ############################
2024-06-17T15:45:54,511           # Package would be ignored #
2024-06-17T15:45:54,512           ############################
2024-06-17T15:45:54,513           Python recognizes 'moleculekit.fileformats.binpos.include' as an importable package[^1],
2024-06-17T15:45:54,513           but it is absent from setuptools' `packages` configuration.

2024-06-17T15:45:54,515           This leads to an ambiguous overall configuration. If you want to distribute this
2024-06-17T15:45:54,516           package, please make sure that 'moleculekit.fileformats.binpos.include' is explicitly added
2024-06-17T15:45:54,517           to the `packages` configuration field.

2024-06-17T15:45:54,518           Alternatively, you can also rely on setuptools' discovery methods
2024-06-17T15:45:54,518           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-06-17T15:45:54,519           instead of `find_packages(...)`/`find:`).

2024-06-17T15:45:54,520           You can read more about "package discovery" on setuptools documentation page:

2024-06-17T15:45:54,521           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-06-17T15:45:54,522           If you don't want 'moleculekit.fileformats.binpos.include' to be distributed and are
2024-06-17T15:45:54,523           already explicitly excluding 'moleculekit.fileformats.binpos.include' via
2024-06-17T15:45:54,523           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-06-17T15:45:54,524           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-06-17T15:45:54,524           combination with a more fine grained `package-data` configuration.

2024-06-17T15:45:54,525           You can read more about "package data files" on setuptools documentation page:

2024-06-17T15:45:54,526           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-06-17T15:45:54,528           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-06-17T15:45:54,528                 even if it does not contain any `.py` files.
2024-06-17T15:45:54,529                 On the other hand, currently there is no concept of package data
2024-06-17T15:45:54,529                 directory, all directories are treated like packages.
2024-06-17T15:45:54,530           ********************************************************************************

2024-06-17T15:45:54,531   !!
2024-06-17T15:45:54,532     check.warn(importable)
2024-06-17T15:45:54,533   /tmp/pip-build-env-f6ac6bbc/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.fileformats.binpos.src' is absent from the `packages` configuration.
2024-06-17T15:45:54,533   !!

2024-06-17T15:45:54,535           ********************************************************************************
2024-06-17T15:45:54,535           ############################
2024-06-17T15:45:54,536           # Package would be ignored #
2024-06-17T15:45:54,536           ############################
2024-06-17T15:45:54,537           Python recognizes 'moleculekit.fileformats.binpos.src' as an importable package[^1],
2024-06-17T15:45:54,538           but it is absent from setuptools' `packages` configuration.

2024-06-17T15:45:54,539           This leads to an ambiguous overall configuration. If you want to distribute this
2024-06-17T15:45:54,540           package, please make sure that 'moleculekit.fileformats.binpos.src' is explicitly added
2024-06-17T15:45:54,540           to the `packages` configuration field.

2024-06-17T15:45:54,541           Alternatively, you can also rely on setuptools' discovery methods
2024-06-17T15:45:54,542           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-06-17T15:45:54,543           instead of `find_packages(...)`/`find:`).

2024-06-17T15:45:54,544           You can read more about "package discovery" on setuptools documentation page:

2024-06-17T15:45:54,545           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-06-17T15:45:54,547           If you don't want 'moleculekit.fileformats.binpos.src' to be distributed and are
2024-06-17T15:45:54,547           already explicitly excluding 'moleculekit.fileformats.binpos.src' via
2024-06-17T15:45:54,548           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-06-17T15:45:54,549           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-06-17T15:45:54,550           combination with a more fine grained `package-data` configuration.

2024-06-17T15:45:54,551           You can read more about "package data files" on setuptools documentation page:

2024-06-17T15:45:54,551           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-06-17T15:45:54,553           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-06-17T15:45:54,553                 even if it does not contain any `.py` files.
2024-06-17T15:45:54,554                 On the other hand, currently there is no concept of package data
2024-06-17T15:45:54,554                 directory, all directories are treated like packages.
2024-06-17T15:45:54,555           ********************************************************************************

2024-06-17T15:45:54,556   !!
2024-06-17T15:45:54,557     check.warn(importable)
2024-06-17T15:45:54,557   /tmp/pip-build-env-f6ac6bbc/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.fileformats.dcd' is absent from the `packages` configuration.
2024-06-17T15:45:54,557   !!

2024-06-17T15:45:54,558           ********************************************************************************
2024-06-17T15:45:54,559           ############################
2024-06-17T15:45:54,559           # Package would be ignored #
2024-06-17T15:45:54,560           ############################
2024-06-17T15:45:54,560           Python recognizes 'moleculekit.fileformats.dcd' as an importable package[^1],
2024-06-17T15:45:54,561           but it is absent from setuptools' `packages` configuration.

2024-06-17T15:45:54,562           This leads to an ambiguous overall configuration. If you want to distribute this
2024-06-17T15:45:54,563           package, please make sure that 'moleculekit.fileformats.dcd' is explicitly added
2024-06-17T15:45:54,563           to the `packages` configuration field.

2024-06-17T15:45:54,565           Alternatively, you can also rely on setuptools' discovery methods
2024-06-17T15:45:54,565           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-06-17T15:45:54,566           instead of `find_packages(...)`/`find:`).

2024-06-17T15:45:54,567           You can read more about "package discovery" on setuptools documentation page:

2024-06-17T15:45:54,568           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-06-17T15:45:54,569           If you don't want 'moleculekit.fileformats.dcd' to be distributed and are
2024-06-17T15:45:54,570           already explicitly excluding 'moleculekit.fileformats.dcd' via
2024-06-17T15:45:54,571           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-06-17T15:45:54,571           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-06-17T15:45:54,572           combination with a more fine grained `package-data` configuration.

2024-06-17T15:45:54,573           You can read more about "package data files" on setuptools documentation page:

2024-06-17T15:45:54,574           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-06-17T15:45:54,576           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-06-17T15:45:54,577                 even if it does not contain any `.py` files.
2024-06-17T15:45:54,578                 On the other hand, currently there is no concept of package data
2024-06-17T15:45:54,578                 directory, all directories are treated like packages.
2024-06-17T15:45:54,579           ********************************************************************************

2024-06-17T15:45:54,580   !!
2024-06-17T15:45:54,581     check.warn(importable)
2024-06-17T15:45:54,581   /tmp/pip-build-env-f6ac6bbc/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.fileformats.dcd.include' is absent from the `packages` configuration.
2024-06-17T15:45:54,582   !!

2024-06-17T15:45:54,583           ********************************************************************************
2024-06-17T15:45:54,584           ############################
2024-06-17T15:45:54,585           # Package would be ignored #
2024-06-17T15:45:54,585           ############################
2024-06-17T15:45:54,586           Python recognizes 'moleculekit.fileformats.dcd.include' as an importable package[^1],
2024-06-17T15:45:54,586           but it is absent from setuptools' `packages` configuration.

2024-06-17T15:45:54,587           This leads to an ambiguous overall configuration. If you want to distribute this
2024-06-17T15:45:54,588           package, please make sure that 'moleculekit.fileformats.dcd.include' is explicitly added
2024-06-17T15:45:54,588           to the `packages` configuration field.

2024-06-17T15:45:54,589           Alternatively, you can also rely on setuptools' discovery methods
2024-06-17T15:45:54,590           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-06-17T15:45:54,590           instead of `find_packages(...)`/`find:`).

2024-06-17T15:45:54,591           You can read more about "package discovery" on setuptools documentation page:

2024-06-17T15:45:54,592           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-06-17T15:45:54,593           If you don't want 'moleculekit.fileformats.dcd.include' to be distributed and are
2024-06-17T15:45:54,594           already explicitly excluding 'moleculekit.fileformats.dcd.include' via
2024-06-17T15:45:54,594           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-06-17T15:45:54,595           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-06-17T15:45:54,596           combination with a more fine grained `package-data` configuration.

2024-06-17T15:45:54,597           You can read more about "package data files" on setuptools documentation page:

2024-06-17T15:45:54,598           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-06-17T15:45:54,601           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-06-17T15:45:54,602                 even if it does not contain any `.py` files.
2024-06-17T15:45:54,602                 On the other hand, currently there is no concept of package data
2024-06-17T15:45:54,603                 directory, all directories are treated like packages.
2024-06-17T15:45:54,603           ********************************************************************************

2024-06-17T15:45:54,605   !!
2024-06-17T15:45:54,605     check.warn(importable)
2024-06-17T15:45:54,606   /tmp/pip-build-env-f6ac6bbc/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.fileformats.dcd.src' is absent from the `packages` configuration.
2024-06-17T15:45:54,606   !!

2024-06-17T15:45:54,608           ********************************************************************************
2024-06-17T15:45:54,608           ############################
2024-06-17T15:45:54,609           # Package would be ignored #
2024-06-17T15:45:54,610           ############################
2024-06-17T15:45:54,610           Python recognizes 'moleculekit.fileformats.dcd.src' as an importable package[^1],
2024-06-17T15:45:54,611           but it is absent from setuptools' `packages` configuration.

2024-06-17T15:45:54,613           This leads to an ambiguous overall configuration. If you want to distribute this
2024-06-17T15:45:54,613           package, please make sure that 'moleculekit.fileformats.dcd.src' is explicitly added
2024-06-17T15:45:54,614           to the `packages` configuration field.

2024-06-17T15:45:54,615           Alternatively, you can also rely on setuptools' discovery methods
2024-06-17T15:45:54,615           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-06-17T15:45:54,616           instead of `find_packages(...)`/`find:`).

2024-06-17T15:45:54,617           You can read more about "package discovery" on setuptools documentation page:

2024-06-17T15:45:54,618           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-06-17T15:45:54,619           If you don't want 'moleculekit.fileformats.dcd.src' to be distributed and are
2024-06-17T15:45:54,619           already explicitly excluding 'moleculekit.fileformats.dcd.src' via
2024-06-17T15:45:54,620           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-06-17T15:45:54,620           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-06-17T15:45:54,621           combination with a more fine grained `package-data` configuration.

2024-06-17T15:45:54,622           You can read more about "package data files" on setuptools documentation page:

2024-06-17T15:45:54,622           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-06-17T15:45:54,624           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-06-17T15:45:54,624                 even if it does not contain any `.py` files.
2024-06-17T15:45:54,625                 On the other hand, currently there is no concept of package data
2024-06-17T15:45:54,625                 directory, all directories are treated like packages.
2024-06-17T15:45:54,625           ********************************************************************************

2024-06-17T15:45:54,627   !!
2024-06-17T15:45:54,627     check.warn(importable)
2024-06-17T15:45:54,627   /tmp/pip-build-env-f6ac6bbc/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.fileformats.xtc' is absent from the `packages` configuration.
2024-06-17T15:45:54,628   !!

2024-06-17T15:45:54,629           ********************************************************************************
2024-06-17T15:45:54,630           ############################
2024-06-17T15:45:54,630           # Package would be ignored #
2024-06-17T15:45:54,631           ############################
2024-06-17T15:45:54,632           Python recognizes 'moleculekit.fileformats.xtc' as an importable package[^1],
2024-06-17T15:45:54,632           but it is absent from setuptools' `packages` configuration.

2024-06-17T15:45:54,634           This leads to an ambiguous overall configuration. If you want to distribute this
2024-06-17T15:45:54,634           package, please make sure that 'moleculekit.fileformats.xtc' is explicitly added
2024-06-17T15:45:54,635           to the `packages` configuration field.

2024-06-17T15:45:54,638           Alternatively, you can also rely on setuptools' discovery methods
2024-06-17T15:45:54,644           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-06-17T15:45:54,659           instead of `find_packages(...)`/`find:`).

2024-06-17T15:45:54,660           You can read more about "package discovery" on setuptools documentation page:

2024-06-17T15:45:54,661           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-06-17T15:45:54,663           If you don't want 'moleculekit.fileformats.xtc' to be distributed and are
2024-06-17T15:45:54,663           already explicitly excluding 'moleculekit.fileformats.xtc' via
2024-06-17T15:45:54,664           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-06-17T15:45:54,665           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-06-17T15:45:54,665           combination with a more fine grained `package-data` configuration.

2024-06-17T15:45:54,667           You can read more about "package data files" on setuptools documentation page:

2024-06-17T15:45:54,673           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-06-17T15:45:54,681           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-06-17T15:45:54,693                 even if it does not contain any `.py` files.
2024-06-17T15:45:54,694                 On the other hand, currently there is no concept of package data
2024-06-17T15:45:54,694                 directory, all directories are treated like packages.
2024-06-17T15:45:54,695           ********************************************************************************

2024-06-17T15:45:54,697   !!
2024-06-17T15:45:54,697     check.warn(importable)
2024-06-17T15:45:54,697   /tmp/pip-build-env-f6ac6bbc/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.fileformats.xtc.include' is absent from the `packages` configuration.
2024-06-17T15:45:54,698   !!

2024-06-17T15:45:54,699           ********************************************************************************
2024-06-17T15:45:54,700           ############################
2024-06-17T15:45:54,700           # Package would be ignored #
2024-06-17T15:45:54,701           ############################
2024-06-17T15:45:54,701           Python recognizes 'moleculekit.fileformats.xtc.include' as an importable package[^1],
2024-06-17T15:45:54,701           but it is absent from setuptools' `packages` configuration.

2024-06-17T15:45:54,702           This leads to an ambiguous overall configuration. If you want to distribute this
2024-06-17T15:45:54,703           package, please make sure that 'moleculekit.fileformats.xtc.include' is explicitly added
2024-06-17T15:45:54,703           to the `packages` configuration field.

2024-06-17T15:45:54,704           Alternatively, you can also rely on setuptools' discovery methods
2024-06-17T15:45:54,707           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-06-17T15:45:54,711           instead of `find_packages(...)`/`find:`).

2024-06-17T15:45:54,719           You can read more about "package discovery" on setuptools documentation page:

2024-06-17T15:45:54,721           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-06-17T15:45:54,722           If you don't want 'moleculekit.fileformats.xtc.include' to be distributed and are
2024-06-17T15:45:54,723           already explicitly excluding 'moleculekit.fileformats.xtc.include' via
2024-06-17T15:45:54,723           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-06-17T15:45:54,724           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-06-17T15:45:54,724           combination with a more fine grained `package-data` configuration.

2024-06-17T15:45:54,725           You can read more about "package data files" on setuptools documentation page:

2024-06-17T15:45:54,734           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-06-17T15:45:54,760           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-06-17T15:45:54,761                 even if it does not contain any `.py` files.
2024-06-17T15:45:54,761                 On the other hand, currently there is no concept of package data
2024-06-17T15:45:54,762                 directory, all directories are treated like packages.
2024-06-17T15:45:54,763           ********************************************************************************

2024-06-17T15:45:54,764   !!
2024-06-17T15:45:54,765     check.warn(importable)
2024-06-17T15:45:54,765   /tmp/pip-build-env-f6ac6bbc/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.fileformats.xtc.src' is absent from the `packages` configuration.
2024-06-17T15:45:54,766   !!

2024-06-17T15:45:54,774           ********************************************************************************
2024-06-17T15:45:54,777           ############################
2024-06-17T15:45:54,788           # Package would be ignored #
2024-06-17T15:45:54,809           ############################
2024-06-17T15:45:54,810           Python recognizes 'moleculekit.fileformats.xtc.src' as an importable package[^1],
2024-06-17T15:45:54,810           but it is absent from setuptools' `packages` configuration.

2024-06-17T15:45:54,812           This leads to an ambiguous overall configuration. If you want to distribute this
2024-06-17T15:45:54,812           package, please make sure that 'moleculekit.fileformats.xtc.src' is explicitly added
2024-06-17T15:45:54,813           to the `packages` configuration field.

2024-06-17T15:45:54,814           Alternatively, you can also rely on setuptools' discovery methods
2024-06-17T15:45:54,814           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-06-17T15:45:54,814           instead of `find_packages(...)`/`find:`).

2024-06-17T15:45:54,815           You can read more about "package discovery" on setuptools documentation page:

2024-06-17T15:45:54,817           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-06-17T15:45:54,818           If you don't want 'moleculekit.fileformats.xtc.src' to be distributed and are
2024-06-17T15:45:54,818           already explicitly excluding 'moleculekit.fileformats.xtc.src' via
2024-06-17T15:45:54,819           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-06-17T15:45:54,819           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-06-17T15:45:54,819           combination with a more fine grained `package-data` configuration.

2024-06-17T15:45:54,821           You can read more about "package data files" on setuptools documentation page:

2024-06-17T15:45:54,822           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-06-17T15:45:54,823           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-06-17T15:45:54,824                 even if it does not contain any `.py` files.
2024-06-17T15:45:54,825                 On the other hand, currently there is no concept of package data
2024-06-17T15:45:54,825                 directory, all directories are treated like packages.
2024-06-17T15:45:54,826           ********************************************************************************

2024-06-17T15:45:54,827   !!
2024-06-17T15:45:54,828     check.warn(importable)
2024-06-17T15:45:54,828   /tmp/pip-build-env-f6ac6bbc/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.interactions.cationpi' is absent from the `packages` configuration.
2024-06-17T15:45:54,829   !!

2024-06-17T15:45:54,830           ********************************************************************************
2024-06-17T15:45:54,831           ############################
2024-06-17T15:45:54,831           # Package would be ignored #
2024-06-17T15:45:54,832           ############################
2024-06-17T15:45:54,833           Python recognizes 'moleculekit.interactions.cationpi' as an importable package[^1],
2024-06-17T15:45:54,833           but it is absent from setuptools' `packages` configuration.

2024-06-17T15:45:54,834           This leads to an ambiguous overall configuration. If you want to distribute this
2024-06-17T15:45:54,835           package, please make sure that 'moleculekit.interactions.cationpi' is explicitly added
2024-06-17T15:45:54,835           to the `packages` configuration field.

2024-06-17T15:45:54,837           Alternatively, you can also rely on setuptools' discovery methods
2024-06-17T15:45:54,837           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-06-17T15:45:54,838           instead of `find_packages(...)`/`find:`).

2024-06-17T15:45:54,839           You can read more about "package discovery" on setuptools documentation page:

2024-06-17T15:45:54,840           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-06-17T15:45:54,842           If you don't want 'moleculekit.interactions.cationpi' to be distributed and are
2024-06-17T15:45:54,842           already explicitly excluding 'moleculekit.interactions.cationpi' via
2024-06-17T15:45:54,843           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-06-17T15:45:54,843           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-06-17T15:45:54,844           combination with a more fine grained `package-data` configuration.

2024-06-17T15:45:54,845           You can read more about "package data files" on setuptools documentation page:

2024-06-17T15:45:54,846           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-06-17T15:45:54,847           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-06-17T15:45:54,848                 even if it does not contain any `.py` files.
2024-06-17T15:45:54,848                 On the other hand, currently there is no concept of package data
2024-06-17T15:45:54,849                 directory, all directories are treated like packages.
2024-06-17T15:45:54,849           ********************************************************************************

2024-06-17T15:45:54,851   !!
2024-06-17T15:45:54,851     check.warn(importable)
2024-06-17T15:45:54,852   /tmp/pip-build-env-f6ac6bbc/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.interactions.hbonds' is absent from the `packages` configuration.
2024-06-17T15:45:54,852   !!

2024-06-17T15:45:54,853           ********************************************************************************
2024-06-17T15:45:54,854           ############################
2024-06-17T15:45:54,854           # Package would be ignored #
2024-06-17T15:45:54,855           ############################
2024-06-17T15:45:54,856           Python recognizes 'moleculekit.interactions.hbonds' as an importable package[^1],
2024-06-17T15:45:54,856           but it is absent from setuptools' `packages` configuration.

2024-06-17T15:45:54,857           This leads to an ambiguous overall configuration. If you want to distribute this
2024-06-17T15:45:54,858           package, please make sure that 'moleculekit.interactions.hbonds' is explicitly added
2024-06-17T15:45:54,858           to the `packages` configuration field.

2024-06-17T15:45:54,859           Alternatively, you can also rely on setuptools' discovery methods
2024-06-17T15:45:54,860           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-06-17T15:45:54,861           instead of `find_packages(...)`/`find:`).

2024-06-17T15:45:54,862           You can read more about "package discovery" on setuptools documentation page:

2024-06-17T15:45:54,863           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-06-17T15:45:54,864           If you don't want 'moleculekit.interactions.hbonds' to be distributed and are
2024-06-17T15:45:54,865           already explicitly excluding 'moleculekit.interactions.hbonds' via
2024-06-17T15:45:54,866           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-06-17T15:45:54,866           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-06-17T15:45:54,867           combination with a more fine grained `package-data` configuration.

2024-06-17T15:45:54,868           You can read more about "package data files" on setuptools documentation page:

2024-06-17T15:45:54,869           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-06-17T15:45:54,871           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-06-17T15:45:54,871                 even if it does not contain any `.py` files.
2024-06-17T15:45:54,872                 On the other hand, currently there is no concept of package data
2024-06-17T15:45:54,873                 directory, all directories are treated like packages.
2024-06-17T15:45:54,873           ********************************************************************************

2024-06-17T15:45:54,875   !!
2024-06-17T15:45:54,875     check.warn(importable)
2024-06-17T15:45:54,876   /tmp/pip-build-env-f6ac6bbc/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.interactions.pipi' is absent from the `packages` configuration.
2024-06-17T15:45:54,877   !!

2024-06-17T15:45:54,878           ********************************************************************************
2024-06-17T15:45:54,879           ############################
2024-06-17T15:45:54,879           # Package would be ignored #
2024-06-17T15:45:54,880           ############################
2024-06-17T15:45:54,880           Python recognizes 'moleculekit.interactions.pipi' as an importable package[^1],
2024-06-17T15:45:54,880           but it is absent from setuptools' `packages` configuration.

2024-06-17T15:45:54,881           This leads to an ambiguous overall configuration. If you want to distribute this
2024-06-17T15:45:54,882           package, please make sure that 'moleculekit.interactions.pipi' is explicitly added
2024-06-17T15:45:54,882           to the `packages` configuration field.

2024-06-17T15:45:54,883           Alternatively, you can also rely on setuptools' discovery methods
2024-06-17T15:45:54,884           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-06-17T15:45:54,884           instead of `find_packages(...)`/`find:`).

2024-06-17T15:45:54,885           You can read more about "package discovery" on setuptools documentation page:

2024-06-17T15:45:54,886           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-06-17T15:45:54,887           If you don't want 'moleculekit.interactions.pipi' to be distributed and are
2024-06-17T15:45:54,888           already explicitly excluding 'moleculekit.interactions.pipi' via
2024-06-17T15:45:54,888           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-06-17T15:45:54,888           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-06-17T15:45:54,889           combination with a more fine grained `package-data` configuration.

2024-06-17T15:45:54,890           You can read more about "package data files" on setuptools documentation page:

2024-06-17T15:45:54,891           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-06-17T15:45:54,893           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-06-17T15:45:54,894                 even if it does not contain any `.py` files.
2024-06-17T15:45:54,895                 On the other hand, currently there is no concept of package data
2024-06-17T15:45:54,896                 directory, all directories are treated like packages.
2024-06-17T15:45:54,904           ********************************************************************************

2024-06-17T15:45:54,940   !!
2024-06-17T15:45:55,000     check.warn(importable)
2024-06-17T15:45:55,018   /tmp/pip-build-env-f6ac6bbc/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.interactions.sigmahole' is absent from the `packages` configuration.
2024-06-17T15:45:55,035   !!

2024-06-17T15:45:55,069           ********************************************************************************
2024-06-17T15:45:55,089           ############################
2024-06-17T15:45:55,105           # Package would be ignored #
2024-06-17T15:45:55,120           ############################
2024-06-17T15:45:55,136           Python recognizes 'moleculekit.interactions.sigmahole' as an importable package[^1],
2024-06-17T15:45:55,154           but it is absent from setuptools' `packages` configuration.

2024-06-17T15:45:55,230           This leads to an ambiguous overall configuration. If you want to distribute this
2024-06-17T15:45:55,231           package, please make sure that 'moleculekit.interactions.sigmahole' is explicitly added
2024-06-17T15:45:55,232           to the `packages` configuration field.

2024-06-17T15:45:55,233           Alternatively, you can also rely on setuptools' discovery methods
2024-06-17T15:45:55,234           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-06-17T15:45:55,234           instead of `find_packages(...)`/`find:`).

2024-06-17T15:45:55,235           You can read more about "package discovery" on setuptools documentation page:

2024-06-17T15:45:55,236           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-06-17T15:45:55,237           If you don't want 'moleculekit.interactions.sigmahole' to be distributed and are
2024-06-17T15:45:55,238           already explicitly excluding 'moleculekit.interactions.sigmahole' via
2024-06-17T15:45:55,239           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-06-17T15:45:55,240           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-06-17T15:45:55,240           combination with a more fine grained `package-data` configuration.

2024-06-17T15:45:55,242           You can read more about "package data files" on setuptools documentation page:

2024-06-17T15:45:55,244           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-06-17T15:45:55,246           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-06-17T15:45:55,246                 even if it does not contain any `.py` files.
2024-06-17T15:45:55,247                 On the other hand, currently there is no concept of package data
2024-06-17T15:45:55,248                 directory, all directories are treated like packages.
2024-06-17T15:45:55,249           ********************************************************************************

2024-06-17T15:45:55,250   !!
2024-06-17T15:45:55,251     check.warn(importable)
2024-06-17T15:45:55,251   /tmp/pip-build-env-f6ac6bbc/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.occupancy_utils' is absent from the `packages` configuration.
2024-06-17T15:45:55,252   !!

2024-06-17T15:45:55,253           ********************************************************************************
2024-06-17T15:45:55,254           ############################
2024-06-17T15:45:55,255           # Package would be ignored #
2024-06-17T15:45:55,256           ############################
2024-06-17T15:45:55,256           Python recognizes 'moleculekit.occupancy_utils' as an importable package[^1],
2024-06-17T15:45:55,257           but it is absent from setuptools' `packages` configuration.

2024-06-17T15:45:55,259           This leads to an ambiguous overall configuration. If you want to distribute this
2024-06-17T15:45:55,259           package, please make sure that 'moleculekit.occupancy_utils' is explicitly added
2024-06-17T15:45:55,260           to the `packages` configuration field.

2024-06-17T15:45:55,265           Alternatively, you can also rely on setuptools' discovery methods
2024-06-17T15:45:55,265           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-06-17T15:45:55,266           instead of `find_packages(...)`/`find:`).

2024-06-17T15:45:55,267           You can read more about "package discovery" on setuptools documentation page:

2024-06-17T15:45:55,269           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-06-17T15:45:55,270           If you don't want 'moleculekit.occupancy_utils' to be distributed and are
2024-06-17T15:45:55,270           already explicitly excluding 'moleculekit.occupancy_utils' via
2024-06-17T15:45:55,271           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-06-17T15:45:55,271           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-06-17T15:45:55,272           combination with a more fine grained `package-data` configuration.

2024-06-17T15:45:55,274           You can read more about "package data files" on setuptools documentation page:

2024-06-17T15:45:55,275           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-06-17T15:45:55,277           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-06-17T15:45:55,278                 even if it does not contain any `.py` files.
2024-06-17T15:45:55,279                 On the other hand, currently there is no concept of package data
2024-06-17T15:45:55,279                 directory, all directories are treated like packages.
2024-06-17T15:45:55,280           ********************************************************************************

2024-06-17T15:45:55,281   !!
2024-06-17T15:45:55,282     check.warn(importable)
2024-06-17T15:45:55,282   /tmp/pip-build-env-f6ac6bbc/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.share' is absent from the `packages` configuration.
2024-06-17T15:45:55,283   !!

2024-06-17T15:45:55,284           ********************************************************************************
2024-06-17T15:45:55,284           ############################
2024-06-17T15:45:55,285           # Package would be ignored #
2024-06-17T15:45:55,286           ############################
2024-06-17T15:45:55,286           Python recognizes 'moleculekit.share' as an importable package[^1],
2024-06-17T15:45:55,287           but it is absent from setuptools' `packages` configuration.

2024-06-17T15:45:55,288           This leads to an ambiguous overall configuration. If you want to distribute this
2024-06-17T15:45:55,288           package, please make sure that 'moleculekit.share' is explicitly added
2024-06-17T15:45:55,289           to the `packages` configuration field.

2024-06-17T15:45:55,290           Alternatively, you can also rely on setuptools' discovery methods
2024-06-17T15:45:55,290           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-06-17T15:45:55,291           instead of `find_packages(...)`/`find:`).

2024-06-17T15:45:55,292           You can read more about "package discovery" on setuptools documentation page:

2024-06-17T15:45:55,293           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-06-17T15:45:55,294           If you don't want 'moleculekit.share' to be distributed and are
2024-06-17T15:45:55,295           already explicitly excluding 'moleculekit.share' via
2024-06-17T15:45:55,296           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-06-17T15:45:55,296           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-06-17T15:45:55,297           combination with a more fine grained `package-data` configuration.

2024-06-17T15:45:55,298           You can read more about "package data files" on setuptools documentation page:

2024-06-17T15:45:55,299           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-06-17T15:45:55,301           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-06-17T15:45:55,301                 even if it does not contain any `.py` files.
2024-06-17T15:45:55,302                 On the other hand, currently there is no concept of package data
2024-06-17T15:45:55,303                 directory, all directories are treated like packages.
2024-06-17T15:45:55,304           ********************************************************************************

2024-06-17T15:45:55,305   !!
2024-06-17T15:45:55,306     check.warn(importable)
2024-06-17T15:45:55,307   /tmp/pip-build-env-f6ac6bbc/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.share.atomselect' is absent from the `packages` configuration.
2024-06-17T15:45:55,308   !!

2024-06-17T15:45:55,309           ********************************************************************************
2024-06-17T15:45:55,309           ############################
2024-06-17T15:45:55,310           # Package would be ignored #
2024-06-17T15:45:55,310           ############################
2024-06-17T15:45:55,311           Python recognizes 'moleculekit.share.atomselect' as an importable package[^1],
2024-06-17T15:45:55,311           but it is absent from setuptools' `packages` configuration.

2024-06-17T15:45:55,313           This leads to an ambiguous overall configuration. If you want to distribute this
2024-06-17T15:45:55,313           package, please make sure that 'moleculekit.share.atomselect' is explicitly added
2024-06-17T15:45:55,314           to the `packages` configuration field.

2024-06-17T15:45:55,314           Alternatively, you can also rely on setuptools' discovery methods
2024-06-17T15:45:55,315           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-06-17T15:45:55,315           instead of `find_packages(...)`/`find:`).

2024-06-17T15:45:55,317           You can read more about "package discovery" on setuptools documentation page:

2024-06-17T15:45:55,318           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-06-17T15:45:55,319           If you don't want 'moleculekit.share.atomselect' to be distributed and are
2024-06-17T15:45:55,320           already explicitly excluding 'moleculekit.share.atomselect' via
2024-06-17T15:45:55,320           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-06-17T15:45:55,321           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-06-17T15:45:55,322           combination with a more fine grained `package-data` configuration.

2024-06-17T15:45:55,323           You can read more about "package data files" on setuptools documentation page:

2024-06-17T15:45:55,324           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-06-17T15:45:55,326           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-06-17T15:45:55,327                 even if it does not contain any `.py` files.
2024-06-17T15:45:55,327                 On the other hand, currently there is no concept of package data
2024-06-17T15:45:55,328                 directory, all directories are treated like packages.
2024-06-17T15:45:55,328           ********************************************************************************

2024-06-17T15:45:55,330   !!
2024-06-17T15:45:55,330     check.warn(importable)
2024-06-17T15:45:55,331   /tmp/pip-build-env-f6ac6bbc/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.share.pdb2pqr.residues' is absent from the `packages` configuration.
2024-06-17T15:45:55,332   !!

2024-06-17T15:45:55,333           ********************************************************************************
2024-06-17T15:45:55,334           ############################
2024-06-17T15:45:55,335           # Package would be ignored #
2024-06-17T15:45:55,336           ############################
2024-06-17T15:45:55,336           Python recognizes 'moleculekit.share.pdb2pqr.residues' as an importable package[^1],
2024-06-17T15:45:55,337           but it is absent from setuptools' `packages` configuration.

2024-06-17T15:45:55,339           This leads to an ambiguous overall configuration. If you want to distribute this
2024-06-17T15:45:55,340           package, please make sure that 'moleculekit.share.pdb2pqr.residues' is explicitly added
2024-06-17T15:45:55,340           to the `packages` configuration field.

2024-06-17T15:45:55,342           Alternatively, you can also rely on setuptools' discovery methods
2024-06-17T15:45:55,342           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-06-17T15:45:55,343           instead of `find_packages(...)`/`find:`).

2024-06-17T15:45:55,344           You can read more about "package discovery" on setuptools documentation page:

2024-06-17T15:45:55,346           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-06-17T15:45:55,347           If you don't want 'moleculekit.share.pdb2pqr.residues' to be distributed and are
2024-06-17T15:45:55,348           already explicitly excluding 'moleculekit.share.pdb2pqr.residues' via
2024-06-17T15:45:55,349           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-06-17T15:45:55,349           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-06-17T15:45:55,350           combination with a more fine grained `package-data` configuration.

2024-06-17T15:45:55,351           You can read more about "package data files" on setuptools documentation page:

2024-06-17T15:45:55,353           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-06-17T15:45:55,354           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-06-17T15:45:55,355                 even if it does not contain any `.py` files.
2024-06-17T15:45:55,355                 On the other hand, currently there is no concept of package data
2024-06-17T15:45:55,356                 directory, all directories are treated like packages.
2024-06-17T15:45:55,357           ********************************************************************************

2024-06-17T15:45:55,358   !!
2024-06-17T15:45:55,358     check.warn(importable)
2024-06-17T15:45:55,359   /tmp/pip-build-env-f6ac6bbc/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.tmalign' is absent from the `packages` configuration.
2024-06-17T15:45:55,359   !!

2024-06-17T15:45:55,361           ********************************************************************************
2024-06-17T15:45:55,361           ############################
2024-06-17T15:45:55,362           # Package would be ignored #
2024-06-17T15:45:55,362           ############################
2024-06-17T15:45:55,363           Python recognizes 'moleculekit.tmalign' as an importable package[^1],
2024-06-17T15:45:55,364           but it is absent from setuptools' `packages` configuration.

2024-06-17T15:45:55,365           This leads to an ambiguous overall configuration. If you want to distribute this
2024-06-17T15:45:55,366           package, please make sure that 'moleculekit.tmalign' is explicitly added
2024-06-17T15:45:55,367           to the `packages` configuration field.

2024-06-17T15:45:55,368           Alternatively, you can also rely on setuptools' discovery methods
2024-06-17T15:45:55,369           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-06-17T15:45:55,369           instead of `find_packages(...)`/`find:`).

2024-06-17T15:45:55,370           You can read more about "package discovery" on setuptools documentation page:

2024-06-17T15:45:55,372           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-06-17T15:45:55,373           If you don't want 'moleculekit.tmalign' to be distributed and are
2024-06-17T15:45:55,374           already explicitly excluding 'moleculekit.tmalign' via
2024-06-17T15:45:55,374           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-06-17T15:45:55,375           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-06-17T15:45:55,376           combination with a more fine grained `package-data` configuration.

2024-06-17T15:45:55,377           You can read more about "package data files" on setuptools documentation page:

2024-06-17T15:45:55,378           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-06-17T15:45:55,380           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-06-17T15:45:55,381                 even if it does not contain any `.py` files.
2024-06-17T15:45:55,382                 On the other hand, currently there is no concept of package data
2024-06-17T15:45:55,382                 directory, all directories are treated like packages.
2024-06-17T15:45:55,383           ********************************************************************************

2024-06-17T15:45:55,385   !!
2024-06-17T15:45:55,386     check.warn(importable)
2024-06-17T15:45:55,386   /tmp/pip-build-env-f6ac6bbc/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.tmalign.include' is absent from the `packages` configuration.
2024-06-17T15:45:55,387   !!

2024-06-17T15:45:55,389           ********************************************************************************
2024-06-17T15:45:55,390           ############################
2024-06-17T15:45:55,391           # Package would be ignored #
2024-06-17T15:45:55,392           ############################
2024-06-17T15:45:55,393           Python recognizes 'moleculekit.tmalign.include' as an importable package[^1],
2024-06-17T15:45:55,393           but it is absent from setuptools' `packages` configuration.

2024-06-17T15:45:55,395           This leads to an ambiguous overall configuration. If you want to distribute this
2024-06-17T15:45:55,395           package, please make sure that 'moleculekit.tmalign.include' is explicitly added
2024-06-17T15:45:55,396           to the `packages` configuration field.

2024-06-17T15:45:55,397           Alternatively, you can also rely on setuptools' discovery methods
2024-06-17T15:45:55,397           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-06-17T15:45:55,398           instead of `find_packages(...)`/`find:`).

2024-06-17T15:45:55,399           You can read more about "package discovery" on setuptools documentation page:

2024-06-17T15:45:55,400           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-06-17T15:45:55,401           If you don't want 'moleculekit.tmalign.include' to be distributed and are
2024-06-17T15:45:55,402           already explicitly excluding 'moleculekit.tmalign.include' via
2024-06-17T15:45:55,403           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-06-17T15:45:55,403           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-06-17T15:45:55,404           combination with a more fine grained `package-data` configuration.

2024-06-17T15:45:55,405           You can read more about "package data files" on setuptools documentation page:

2024-06-17T15:45:55,407           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-06-17T15:45:55,408           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-06-17T15:45:55,409                 even if it does not contain any `.py` files.
2024-06-17T15:45:55,410                 On the other hand, currently there is no concept of package data
2024-06-17T15:45:55,410                 directory, all directories are treated like packages.
2024-06-17T15:45:55,411           ********************************************************************************

2024-06-17T15:45:55,412   !!
2024-06-17T15:45:55,413     check.warn(importable)
2024-06-17T15:45:55,414   /tmp/pip-build-env-f6ac6bbc/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.tmalign.src' is absent from the `packages` configuration.
2024-06-17T15:45:55,414   !!

2024-06-17T15:45:55,416           ********************************************************************************
2024-06-17T15:45:55,416           ############################
2024-06-17T15:45:55,417           # Package would be ignored #
2024-06-17T15:45:55,418           ############################
2024-06-17T15:45:55,418           Python recognizes 'moleculekit.tmalign.src' as an importable package[^1],
2024-06-17T15:45:55,419           but it is absent from setuptools' `packages` configuration.

2024-06-17T15:45:55,420           This leads to an ambiguous overall configuration. If you want to distribute this
2024-06-17T15:45:55,420           package, please make sure that 'moleculekit.tmalign.src' is explicitly added
2024-06-17T15:45:55,421           to the `packages` configuration field.

2024-06-17T15:45:55,422           Alternatively, you can also rely on setuptools' discovery methods
2024-06-17T15:45:55,422           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-06-17T15:45:55,423           instead of `find_packages(...)`/`find:`).

2024-06-17T15:45:55,424           You can read more about "package discovery" on setuptools documentation page:

2024-06-17T15:45:55,425           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-06-17T15:45:55,426           If you don't want 'moleculekit.tmalign.src' to be distributed and are
2024-06-17T15:45:55,427           already explicitly excluding 'moleculekit.tmalign.src' via
2024-06-17T15:45:55,427           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-06-17T15:45:55,428           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-06-17T15:45:55,428           combination with a more fine grained `package-data` configuration.

2024-06-17T15:45:55,429           You can read more about "package data files" on setuptools documentation page:

2024-06-17T15:45:55,430           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-06-17T15:45:55,431           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-06-17T15:45:55,432                 even if it does not contain any `.py` files.
2024-06-17T15:45:55,432                 On the other hand, currently there is no concept of package data
2024-06-17T15:45:55,433                 directory, all directories are treated like packages.
2024-06-17T15:45:55,433           ********************************************************************************

2024-06-17T15:45:55,434   !!
2024-06-17T15:45:55,435     check.warn(importable)
2024-06-17T15:45:55,435   /tmp/pip-build-env-f6ac6bbc/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.wrapping' is absent from the `packages` configuration.
2024-06-17T15:45:55,436   !!

2024-06-17T15:45:55,437           ********************************************************************************
2024-06-17T15:45:55,437           ############################
2024-06-17T15:45:55,437           # Package would be ignored #
2024-06-17T15:45:55,438           ############################
2024-06-17T15:45:55,438           Python recognizes 'moleculekit.wrapping' as an importable package[^1],
2024-06-17T15:45:55,439           but it is absent from setuptools' `packages` configuration.

2024-06-17T15:45:55,440           This leads to an ambiguous overall configuration. If you want to distribute this
2024-06-17T15:45:55,440           package, please make sure that 'moleculekit.wrapping' is explicitly added
2024-06-17T15:45:55,441           to the `packages` configuration field.

2024-06-17T15:45:55,442           Alternatively, you can also rely on setuptools' discovery methods
2024-06-17T15:45:55,442           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-06-17T15:45:55,443           instead of `find_packages(...)`/`find:`).

2024-06-17T15:45:55,444           You can read more about "package discovery" on setuptools documentation page:

2024-06-17T15:45:55,445           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-06-17T15:45:55,446           If you don't want 'moleculekit.wrapping' to be distributed and are
2024-06-17T15:45:55,447           already explicitly excluding 'moleculekit.wrapping' via
2024-06-17T15:45:55,447           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-06-17T15:45:55,448           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-06-17T15:45:55,448           combination with a more fine grained `package-data` configuration.

2024-06-17T15:45:55,449           You can read more about "package data files" on setuptools documentation page:

2024-06-17T15:45:55,450           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-06-17T15:45:55,452           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-06-17T15:45:55,452                 even if it does not contain any `.py` files.
2024-06-17T15:45:55,453                 On the other hand, currently there is no concept of package data
2024-06-17T15:45:55,454                 directory, all directories are treated like packages.
2024-06-17T15:45:55,454           ********************************************************************************

2024-06-17T15:45:55,455   !!
2024-06-17T15:45:55,456     check.warn(importable)
2024-06-17T15:45:55,456   copying moleculekit/logging.ini -> build/lib.linux-armv7l-cpython-311/moleculekit
2024-06-17T15:45:55,457   copying moleculekit/vmd_wrapper -> build/lib.linux-armv7l-cpython-311/moleculekit
2024-06-17T15:45:55,457   creating build/lib.linux-armv7l-cpython-311/moleculekit/atomselect_utils
2024-06-17T15:45:55,457   copying moleculekit/atomselect_utils/atomselect_utils.cpp -> build/lib.linux-armv7l-cpython-311/moleculekit/atomselect_utils
2024-06-17T15:45:55,458   copying moleculekit/atomselect_utils/atomselect_utils.pyx -> build/lib.linux-armv7l-cpython-311/moleculekit/atomselect_utils
2024-06-17T15:45:55,458   creating build/lib.linux-armv7l-cpython-311/moleculekit/bondguesser_utils
2024-06-17T15:45:55,459   copying moleculekit/bondguesser_utils/bondguesser_utils.cpp -> build/lib.linux-armv7l-cpython-311/moleculekit/bondguesser_utils
2024-06-17T15:45:55,459   copying moleculekit/bondguesser_utils/bondguesser_utils.pyx -> build/lib.linux-armv7l-cpython-311/moleculekit/bondguesser_utils
2024-06-17T15:45:55,459   creating build/lib.linux-armv7l-cpython-311/moleculekit/cython_utils
2024-06-17T15:45:55,460   copying moleculekit/cython_utils/cython_utils.cpp -> build/lib.linux-armv7l-cpython-311/moleculekit/cython_utils
2024-06-17T15:45:55,460   copying moleculekit/cython_utils/cython_utils.pyx -> build/lib.linux-armv7l-cpython-311/moleculekit/cython_utils
2024-06-17T15:45:55,461   creating build/lib.linux-armv7l-cpython-311/moleculekit/distance_utils
2024-06-17T15:45:55,461   copying moleculekit/distance_utils/distance_utils.cpp -> build/lib.linux-armv7l-cpython-311/moleculekit/distance_utils
2024-06-17T15:45:55,462   copying moleculekit/distance_utils/distance_utils.pyx -> build/lib.linux-armv7l-cpython-311/moleculekit/distance_utils
2024-06-17T15:45:55,462   creating build/lib.linux-armv7l-cpython-311/moleculekit/occupancy_utils
2024-06-17T15:45:55,463   copying moleculekit/occupancy_utils/occupancy_utils.cpp -> build/lib.linux-armv7l-cpython-311/moleculekit/occupancy_utils
2024-06-17T15:45:55,463   copying moleculekit/occupancy_utils/occupancy_utils.pyx -> build/lib.linux-armv7l-cpython-311/moleculekit/occupancy_utils
2024-06-17T15:45:55,464   creating build/lib.linux-armv7l-cpython-311/moleculekit/share
2024-06-17T15:45:55,464   copying moleculekit/share/ALA.cif -> build/lib.linux-armv7l-cpython-311/moleculekit/share
2024-06-17T15:45:55,465   copying moleculekit/share/backbone.cif -> build/lib.linux-armv7l-cpython-311/moleculekit/share
2024-06-17T15:45:55,466   copying moleculekit/share/opm_sequences.json -> build/lib.linux-armv7l-cpython-311/moleculekit/share
2024-06-17T15:45:55,466   creating build/lib.linux-armv7l-cpython-311/moleculekit/share/atomselect
2024-06-17T15:45:55,467   copying moleculekit/share/atomselect/atomselect.json -> build/lib.linux-armv7l-cpython-311/moleculekit/share/atomselect
2024-06-17T15:45:55,467   creating build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr
2024-06-17T15:45:55,468   creating build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-06-17T15:45:55,468   copying moleculekit/share/pdb2pqr/residues/.gitkeep -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-06-17T15:45:55,469   copying moleculekit/share/pdb2pqr/residues/004.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-06-17T15:45:55,469   copying moleculekit/share/pdb2pqr/residues/004.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-06-17T15:45:55,470   copying moleculekit/share/pdb2pqr/residues/03Y.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-06-17T15:45:55,470   copying moleculekit/share/pdb2pqr/residues/03Y.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-06-17T15:45:55,471   copying moleculekit/share/pdb2pqr/residues/0A1.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-06-17T15:45:55,471   copying moleculekit/share/pdb2pqr/residues/0A1.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-06-17T15:45:55,472   copying moleculekit/share/pdb2pqr/residues/0AF.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-06-17T15:45:55,473   copying moleculekit/share/pdb2pqr/residues/0AF.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-06-17T15:45:55,473   copying moleculekit/share/pdb2pqr/residues/0BN.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-06-17T15:45:55,474   copying moleculekit/share/pdb2pqr/residues/0BN.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-06-17T15:45:55,474   copying moleculekit/share/pdb2pqr/residues/1MH.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-06-17T15:45:55,475   copying moleculekit/share/pdb2pqr/residues/1MH.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-06-17T15:45:55,475   copying moleculekit/share/pdb2pqr/residues/2AS.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-06-17T15:45:55,475   copying moleculekit/share/pdb2pqr/residues/2AS.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-06-17T15:45:55,476   copying moleculekit/share/pdb2pqr/residues/2GX.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-06-17T15:45:55,476   copying moleculekit/share/pdb2pqr/residues/2GX.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-06-17T15:45:55,477   copying moleculekit/share/pdb2pqr/residues/2ML.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-06-17T15:45:55,477   copying moleculekit/share/pdb2pqr/residues/2ML.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-06-17T15:45:55,478   copying moleculekit/share/pdb2pqr/residues/2MR.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-06-17T15:45:55,478   copying moleculekit/share/pdb2pqr/residues/2MR.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-06-17T15:45:55,479   copying moleculekit/share/pdb2pqr/residues/4IN.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-06-17T15:45:55,479   copying moleculekit/share/pdb2pqr/residues/4IN.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-06-17T15:45:55,480   copying moleculekit/share/pdb2pqr/residues/4PH.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-06-17T15:45:55,480   copying moleculekit/share/pdb2pqr/residues/4PH.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-06-17T15:45:55,481   copying moleculekit/share/pdb2pqr/residues/4PQ.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-06-17T15:45:55,481   copying moleculekit/share/pdb2pqr/residues/4PQ.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-06-17T15:45:55,482   copying moleculekit/share/pdb2pqr/residues/5JP.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-06-17T15:45:55,482   copying moleculekit/share/pdb2pqr/residues/5JP.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-06-17T15:45:55,483   copying moleculekit/share/pdb2pqr/residues/AA4.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-06-17T15:45:55,483   copying moleculekit/share/pdb2pqr/residues/AA4.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-06-17T15:45:55,484   copying moleculekit/share/pdb2pqr/residues/ABA.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-06-17T15:45:55,485   copying moleculekit/share/pdb2pqr/residues/ABA.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-06-17T15:45:55,485   copying moleculekit/share/pdb2pqr/residues/AHP.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-06-17T15:45:55,486   copying moleculekit/share/pdb2pqr/residues/AHP.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-06-17T15:45:55,486   copying moleculekit/share/pdb2pqr/residues/ALC.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-06-17T15:45:55,487   copying moleculekit/share/pdb2pqr/residues/ALC.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-06-17T15:45:55,487   copying moleculekit/share/pdb2pqr/residues/ALN.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-06-17T15:45:55,487   copying moleculekit/share/pdb2pqr/residues/ALN.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-06-17T15:45:55,488   copying moleculekit/share/pdb2pqr/residues/ALY.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-06-17T15:45:55,489   copying moleculekit/share/pdb2pqr/residues/ALY.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-06-17T15:45:55,489   copying moleculekit/share/pdb2pqr/residues/APD.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-06-17T15:45:55,490   copying moleculekit/share/pdb2pqr/residues/APD.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-06-17T15:45:55,490   copying moleculekit/share/pdb2pqr/residues/BB8.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-06-17T15:45:55,491   copying moleculekit/share/pdb2pqr/residues/BB8.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-06-17T15:45:55,491   copying moleculekit/share/pdb2pqr/residues/BCS.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-06-17T15:45:55,492   copying moleculekit/share/pdb2pqr/residues/BCS.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-06-17T15:45:55,492   copying moleculekit/share/pdb2pqr/residues/BTK.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-06-17T15:45:55,493   copying moleculekit/share/pdb2pqr/residues/BTK.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-06-17T15:45:55,493   copying moleculekit/share/pdb2pqr/residues/CCS.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-06-17T15:45:55,494   copying moleculekit/share/pdb2pqr/residues/CCS.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-06-17T15:45:55,494   copying moleculekit/share/pdb2pqr/residues/CGU.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-06-17T15:45:55,495   copying moleculekit/share/pdb2pqr/residues/CGU.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-06-17T15:45:55,495   copying moleculekit/share/pdb2pqr/residues/CSA.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-06-17T15:45:55,496   copying moleculekit/share/pdb2pqr/residues/CSA.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-06-17T15:45:55,497   copying moleculekit/share/pdb2pqr/residues/CSO.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-06-17T15:45:55,497   copying moleculekit/share/pdb2pqr/residues/CSO.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-06-17T15:45:55,498   copying moleculekit/share/pdb2pqr/residues/CSP.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-06-17T15:45:55,498   copying moleculekit/share/pdb2pqr/residues/CSP.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-06-17T15:45:55,499   copying moleculekit/share/pdb2pqr/residues/CSS.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-06-17T15:45:55,499   copying moleculekit/share/pdb2pqr/residues/CSS.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-06-17T15:45:55,500   copying moleculekit/share/pdb2pqr/residues/D4P.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-06-17T15:45:55,501   copying moleculekit/share/pdb2pqr/residues/D4P.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-06-17T15:45:55,501   copying moleculekit/share/pdb2pqr/residues/DA2.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-06-17T15:45:55,502   copying moleculekit/share/pdb2pqr/residues/DA2.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-06-17T15:45:55,502   copying moleculekit/share/pdb2pqr/residues/DAB.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-06-17T15:45:55,503   copying moleculekit/share/pdb2pqr/residues/DAB.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-06-17T15:45:55,503   copying moleculekit/share/pdb2pqr/residues/DAH.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-06-17T15:45:55,504   copying moleculekit/share/pdb2pqr/residues/DAH.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-06-17T15:45:55,504   copying moleculekit/share/pdb2pqr/residues/DPP.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-06-17T15:45:55,504   copying moleculekit/share/pdb2pqr/residues/DPP.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-06-17T15:45:55,505   copying moleculekit/share/pdb2pqr/residues/ESC.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-06-17T15:45:55,506   copying moleculekit/share/pdb2pqr/residues/ESC.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-06-17T15:45:55,506   copying moleculekit/share/pdb2pqr/residues/FGL.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-06-17T15:45:55,506   copying moleculekit/share/pdb2pqr/residues/FGL.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-06-17T15:45:55,507   copying moleculekit/share/pdb2pqr/residues/GHG.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-06-17T15:45:55,508   copying moleculekit/share/pdb2pqr/residues/GHG.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-06-17T15:45:55,508   copying moleculekit/share/pdb2pqr/residues/GME.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-06-17T15:45:55,509   copying moleculekit/share/pdb2pqr/residues/GME.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-06-17T15:45:55,509   copying moleculekit/share/pdb2pqr/residues/GNC.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-06-17T15:45:55,510   copying moleculekit/share/pdb2pqr/residues/GNC.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-06-17T15:45:55,510   copying moleculekit/share/pdb2pqr/residues/HHK.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-06-17T15:45:55,511   copying moleculekit/share/pdb2pqr/residues/HHK.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-06-17T15:45:55,512   copying moleculekit/share/pdb2pqr/residues/HLU.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-06-17T15:45:55,512   copying moleculekit/share/pdb2pqr/residues/HLU.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-06-17T15:45:55,513   copying moleculekit/share/pdb2pqr/residues/HLX.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-06-17T15:45:55,513   copying moleculekit/share/pdb2pqr/residues/HLX.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-06-17T15:45:55,514   copying moleculekit/share/pdb2pqr/residues/HOX.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-06-17T15:45:55,515   copying moleculekit/share/pdb2pqr/residues/HOX.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-06-17T15:45:55,518   copying moleculekit/share/pdb2pqr/residues/HPE.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-06-17T15:45:55,520   copying moleculekit/share/pdb2pqr/residues/HPE.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-06-17T15:45:55,522   copying moleculekit/share/pdb2pqr/residues/HQA.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-06-17T15:45:55,525   copying moleculekit/share/pdb2pqr/residues/HQA.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-06-17T15:45:55,527   copying moleculekit/share/pdb2pqr/residues/HTR.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-06-17T15:45:55,529   copying moleculekit/share/pdb2pqr/residues/HTR.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-06-17T15:45:55,532   copying moleculekit/share/pdb2pqr/residues/HYP.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-06-17T15:45:55,534   copying moleculekit/share/pdb2pqr/residues/HYP.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-06-17T15:45:55,537   copying moleculekit/share/pdb2pqr/residues/I2M.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-06-17T15:45:55,539   copying moleculekit/share/pdb2pqr/residues/I2M.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-06-17T15:45:55,541   copying moleculekit/share/pdb2pqr/residues/IGL.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-06-17T15:45:55,543   copying moleculekit/share/pdb2pqr/residues/IGL.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-06-17T15:45:55,546   copying moleculekit/share/pdb2pqr/residues/IIL.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-06-17T15:45:55,549   copying moleculekit/share/pdb2pqr/residues/IIL.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-06-17T15:45:55,552   copying moleculekit/share/pdb2pqr/residues/IML.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-06-17T15:45:55,554   copying moleculekit/share/pdb2pqr/residues/IML.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-06-17T15:45:55,557   copying moleculekit/share/pdb2pqr/residues/KYN.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-06-17T15:45:55,559   copying moleculekit/share/pdb2pqr/residues/KYN.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-06-17T15:45:55,562   copying moleculekit/share/pdb2pqr/residues/LME.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-06-17T15:45:55,564   copying moleculekit/share/pdb2pqr/residues/LME.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-06-17T15:45:55,566   copying moleculekit/share/pdb2pqr/residues/LMQ.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-06-17T15:45:55,569   copying moleculekit/share/pdb2pqr/residues/LMQ.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-06-17T15:45:55,571   copying moleculekit/share/pdb2pqr/residues/LYZ.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-06-17T15:45:55,574   copying moleculekit/share/pdb2pqr/residues/LYZ.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-06-17T15:45:55,577   copying moleculekit/share/pdb2pqr/residues/M3L.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-06-17T15:45:55,579   copying moleculekit/share/pdb2pqr/residues/M3L.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-06-17T15:45:55,582   copying moleculekit/share/pdb2pqr/residues/ME0.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-06-17T15:45:55,585   copying moleculekit/share/pdb2pqr/residues/ME0.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-06-17T15:45:55,587   copying moleculekit/share/pdb2pqr/residues/MEA.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-06-17T15:45:55,589   copying moleculekit/share/pdb2pqr/residues/MEA.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-06-17T15:45:55,591   copying moleculekit/share/pdb2pqr/residues/MEN.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-06-17T15:45:55,593   copying moleculekit/share/pdb2pqr/residues/MEN.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-06-17T15:45:55,595   copying moleculekit/share/pdb2pqr/residues/MEQ.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-06-17T15:45:55,597   copying moleculekit/share/pdb2pqr/residues/MEQ.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-06-17T15:45:55,599   copying moleculekit/share/pdb2pqr/residues/MLE.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-06-17T15:45:55,601   copying moleculekit/share/pdb2pqr/residues/MLE.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-06-17T15:45:55,604   copying moleculekit/share/pdb2pqr/residues/MLY.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-06-17T15:45:55,605   copying moleculekit/share/pdb2pqr/residues/MLY.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-06-17T15:45:55,608   copying moleculekit/share/pdb2pqr/residues/MLZ.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-06-17T15:45:55,610   copying moleculekit/share/pdb2pqr/residues/MLZ.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-06-17T15:45:55,612   copying moleculekit/share/pdb2pqr/residues/MME.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-06-17T15:45:55,614   copying moleculekit/share/pdb2pqr/residues/MME.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-06-17T15:45:55,617   copying moleculekit/share/pdb2pqr/residues/MMO.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-06-17T15:45:55,619   copying moleculekit/share/pdb2pqr/residues/MMO.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-06-17T15:45:55,621   copying moleculekit/share/pdb2pqr/residues/MVA.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-06-17T15:45:55,623   copying moleculekit/share/pdb2pqr/residues/MVA.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-06-17T15:45:55,625   copying moleculekit/share/pdb2pqr/residues/NAL.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-06-17T15:45:55,627   copying moleculekit/share/pdb2pqr/residues/NAL.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-06-17T15:45:55,629   copying moleculekit/share/pdb2pqr/residues/NCY.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-06-17T15:45:55,631   copying moleculekit/share/pdb2pqr/residues/NCY.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-06-17T15:45:55,634   copying moleculekit/share/pdb2pqr/residues/NLE.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-06-17T15:45:55,636   copying moleculekit/share/pdb2pqr/residues/NLE.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-06-17T15:45:55,639   copying moleculekit/share/pdb2pqr/residues/NVA.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-06-17T15:45:55,642   copying moleculekit/share/pdb2pqr/residues/NVA.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-06-17T15:45:55,644   copying moleculekit/share/pdb2pqr/residues/NZC.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-06-17T15:45:55,646   copying moleculekit/share/pdb2pqr/residues/NZC.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-06-17T15:45:55,648   copying moleculekit/share/pdb2pqr/residues/OCY.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-06-17T15:45:55,650   copying moleculekit/share/pdb2pqr/residues/OCY.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-06-17T15:45:55,652   copying moleculekit/share/pdb2pqr/residues/OMX.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-06-17T15:45:55,654   copying moleculekit/share/pdb2pqr/residues/OMX.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-06-17T15:45:55,656   copying moleculekit/share/pdb2pqr/residues/ONL.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-06-17T15:45:55,658   copying moleculekit/share/pdb2pqr/residues/ONL.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-06-17T15:45:55,660   copying moleculekit/share/pdb2pqr/residues/ORM.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-06-17T15:45:55,663   copying moleculekit/share/pdb2pqr/residues/ORM.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-06-17T15:45:55,665   copying moleculekit/share/pdb2pqr/residues/P1L.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-06-17T15:45:55,667   copying moleculekit/share/pdb2pqr/residues/P1L.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-06-17T15:45:55,670   copying moleculekit/share/pdb2pqr/residues/PCA.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-06-17T15:45:55,674   copying moleculekit/share/pdb2pqr/residues/PCA.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-06-17T15:45:55,676   copying moleculekit/share/pdb2pqr/residues/PRK.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-06-17T15:45:55,678   copying moleculekit/share/pdb2pqr/residues/PRK.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-06-17T15:45:55,680   copying moleculekit/share/pdb2pqr/residues/PTR.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-06-17T15:45:55,683   copying moleculekit/share/pdb2pqr/residues/PTR.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-06-17T15:45:55,685   copying moleculekit/share/pdb2pqr/residues/SEP.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-06-17T15:45:55,687   copying moleculekit/share/pdb2pqr/residues/SEP.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-06-17T15:45:55,689   copying moleculekit/share/pdb2pqr/residues/TPO.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-06-17T15:45:55,692   copying moleculekit/share/pdb2pqr/residues/TPO.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-06-17T15:45:55,694   copying moleculekit/share/pdb2pqr/residues/TRO.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-06-17T15:45:55,696   copying moleculekit/share/pdb2pqr/residues/TRO.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-06-17T15:45:55,698   copying moleculekit/share/pdb2pqr/residues/TY2.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-06-17T15:45:55,700   copying moleculekit/share/pdb2pqr/residues/TY2.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-06-17T15:45:55,703   copying moleculekit/share/pdb2pqr/residues/TYQ.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-06-17T15:45:55,706   copying moleculekit/share/pdb2pqr/residues/TYQ.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-06-17T15:45:55,709   copying moleculekit/share/pdb2pqr/residues/YCM.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-06-17T15:45:55,711   copying moleculekit/share/pdb2pqr/residues/YCM.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-06-17T15:45:55,713   copying moleculekit/share/pdb2pqr/residues/YNM.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-06-17T15:45:55,715   copying moleculekit/share/pdb2pqr/residues/YNM.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-06-17T15:45:55,717   creating build/lib.linux-armv7l-cpython-311/moleculekit/tmalign
2024-06-17T15:45:55,718   copying moleculekit/tmalign/tmalign_util.cpp -> build/lib.linux-armv7l-cpython-311/moleculekit/tmalign
2024-06-17T15:45:55,786   copying moleculekit/tmalign/tmalign_util.pyx -> build/lib.linux-armv7l-cpython-311/moleculekit/tmalign
2024-06-17T15:45:55,789   copying moleculekit/tmalign/tmalignlib.pxd -> build/lib.linux-armv7l-cpython-311/moleculekit/tmalign
2024-06-17T15:45:55,791   creating build/lib.linux-armv7l-cpython-311/moleculekit/tmalign/include
2024-06-17T15:45:55,792   copying moleculekit/tmalign/include/TMAlign.h -> build/lib.linux-armv7l-cpython-311/moleculekit/tmalign/include
2024-06-17T15:45:55,794   creating build/lib.linux-armv7l-cpython-311/moleculekit/tmalign/src
2024-06-17T15:45:55,795   copying moleculekit/tmalign/src/TMAlign.cpp -> build/lib.linux-armv7l-cpython-311/moleculekit/tmalign/src
2024-06-17T15:45:55,803   creating build/lib.linux-armv7l-cpython-311/moleculekit/wrapping
2024-06-17T15:45:55,804   copying moleculekit/wrapping/wrapping.cpp -> build/lib.linux-armv7l-cpython-311/moleculekit/wrapping
2024-06-17T15:45:55,885   copying moleculekit/wrapping/wrapping.pyx -> build/lib.linux-armv7l-cpython-311/moleculekit/wrapping
2024-06-17T15:45:55,887   creating build/lib.linux-armv7l-cpython-311/moleculekit/interactions/cationpi
2024-06-17T15:45:55,889   copying moleculekit/interactions/cationpi/cationpi.cpp -> build/lib.linux-armv7l-cpython-311/moleculekit/interactions/cationpi
2024-06-17T15:45:55,916   copying moleculekit/interactions/cationpi/cationpi.pyx -> build/lib.linux-armv7l-cpython-311/moleculekit/interactions/cationpi
2024-06-17T15:45:55,918   creating build/lib.linux-armv7l-cpython-311/moleculekit/interactions/hbonds
2024-06-17T15:45:55,919   copying moleculekit/interactions/hbonds/hbonds.cpp -> build/lib.linux-armv7l-cpython-311/moleculekit/interactions/hbonds
2024-06-17T15:45:55,956   copying moleculekit/interactions/hbonds/hbonds.pyx -> build/lib.linux-armv7l-cpython-311/moleculekit/interactions/hbonds
2024-06-17T15:45:55,958   creating build/lib.linux-armv7l-cpython-311/moleculekit/interactions/pipi
2024-06-17T15:45:55,959   copying moleculekit/interactions/pipi/pipi.cpp -> build/lib.linux-armv7l-cpython-311/moleculekit/interactions/pipi
2024-06-17T15:45:55,991   copying moleculekit/interactions/pipi/pipi.pyx -> build/lib.linux-armv7l-cpython-311/moleculekit/interactions/pipi
2024-06-17T15:45:55,994   creating build/lib.linux-armv7l-cpython-311/moleculekit/interactions/sigmahole
2024-06-17T15:45:55,995   copying moleculekit/interactions/sigmahole/sigmahole.cpp -> build/lib.linux-armv7l-cpython-311/moleculekit/interactions/sigmahole
2024-06-17T15:45:56,024   copying moleculekit/interactions/sigmahole/sigmahole.pyx -> build/lib.linux-armv7l-cpython-311/moleculekit/interactions/sigmahole
2024-06-17T15:45:56,026   creating build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/binpos
2024-06-17T15:45:56,027   copying moleculekit/fileformats/binpos/binpos.c -> build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/binpos
2024-06-17T15:45:56,047   copying moleculekit/fileformats/binpos/binpos.pyx -> build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/binpos
2024-06-17T15:45:56,051   copying moleculekit/fileformats/binpos/binposlib.pxd -> build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/binpos
2024-06-17T15:45:56,053   creating build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/binpos/include
2024-06-17T15:45:56,054   copying moleculekit/fileformats/binpos/include/binposplugin.h -> build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/binpos/include
2024-06-17T15:45:56,057   copying moleculekit/fileformats/binpos/include/largefiles.h -> build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/binpos/include
2024-06-17T15:45:56,059   copying moleculekit/fileformats/binpos/include/molfile_plugin.h -> build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/binpos/include
2024-06-17T15:45:56,062   creating build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/binpos/src
2024-06-17T15:45:56,063   copying moleculekit/fileformats/binpos/src/binposplugin.c -> build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/binpos/src
2024-06-17T15:45:56,066   creating build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/dcd
2024-06-17T15:45:56,067   copying moleculekit/fileformats/dcd/dcd.c -> build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/dcd
2024-06-17T15:45:56,083   copying moleculekit/fileformats/dcd/dcd.pyx -> build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/dcd
2024-06-17T15:45:56,086   copying moleculekit/fileformats/dcd/dcdlib.pxd -> build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/dcd
2024-06-17T15:45:56,088   creating build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/dcd/include
2024-06-17T15:45:56,090   copying moleculekit/fileformats/dcd/include/dcdplugin.h -> build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/dcd/include
2024-06-17T15:45:56,094   copying moleculekit/fileformats/dcd/include/endianswap.h -> build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/dcd/include
2024-06-17T15:45:56,096   copying moleculekit/fileformats/dcd/include/fastio.h -> build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/dcd/include
2024-06-17T15:45:56,099   copying moleculekit/fileformats/dcd/include/largefiles.h -> build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/dcd/include
2024-06-17T15:45:56,102   copying moleculekit/fileformats/dcd/include/molfile_plugin.h -> build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/dcd/include
2024-06-17T15:45:56,106   creating build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/dcd/src
2024-06-17T15:45:56,107   copying moleculekit/fileformats/dcd/src/dcdplugin.c -> build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/dcd/src
2024-06-17T15:45:56,111   creating build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/xtc
2024-06-17T15:45:56,112   copying moleculekit/fileformats/xtc/trr.c -> build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/xtc
2024-06-17T15:45:56,140   copying moleculekit/fileformats/xtc/trr.pyx -> build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/xtc
2024-06-17T15:45:56,144   copying moleculekit/fileformats/xtc/trrlib.pxd -> build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/xtc
2024-06-17T15:45:56,147   copying moleculekit/fileformats/xtc/xdrlib.pxd -> build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/xtc
2024-06-17T15:45:56,150   copying moleculekit/fileformats/xtc/xtc.cpp -> build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/xtc
2024-06-17T15:45:56,184   copying moleculekit/fileformats/xtc/xtc.pyx -> build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/xtc
2024-06-17T15:45:56,191   copying moleculekit/fileformats/xtc/xtclib.pxd -> build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/xtc
2024-06-17T15:45:56,196   creating build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/include
2024-06-17T15:45:56,413   copying moleculekit/fileformats/xtc/include/trr_header.h -> build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/include
2024-06-17T15:45:56,418   copying moleculekit/fileformats/xtc/include/xdr_seek.h -> build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/include
2024-06-17T15:45:56,422   copying moleculekit/fileformats/xtc/include/xdrfile.h -> build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/include
2024-06-17T15:45:56,427   copying moleculekit/fileformats/xtc/include/xdrfile_trr.h -> build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/include
2024-06-17T15:45:56,431   copying moleculekit/fileformats/xtc/include/xdrfile_xtc.h -> build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/include
2024-06-17T15:45:56,435   copying moleculekit/fileformats/xtc/include/xtc.h -> build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/include
2024-06-17T15:45:56,439   creating build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/src
2024-06-17T15:45:56,441   copying moleculekit/fileformats/xtc/src/xdr_seek.c -> build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/src
2024-06-17T15:45:56,445   copying moleculekit/fileformats/xtc/src/xdrfile.cpp -> build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/src
2024-06-17T15:45:56,451   copying moleculekit/fileformats/xtc/src/xdrfile_trr.c -> build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/src
2024-06-17T15:45:56,455   copying moleculekit/fileformats/xtc/src/xdrfile_xtc.cpp -> build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/src
2024-06-17T15:45:56,459   copying moleculekit/fileformats/xtc/src/xtc.cpp -> build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/src
2024-06-17T15:45:56,478   UPDATING build/lib.linux-armv7l-cpython-311/moleculekit/_version.py
2024-06-17T15:45:56,479   set build/lib.linux-armv7l-cpython-311/moleculekit/_version.py to '1.8.34'
2024-06-17T15:45:56,480   running build_ext
2024-06-17T15:45:56,502   building 'moleculekit.interactions.hbonds' extension
2024-06-17T15:45:56,503   creating build/temp.linux-armv7l-cpython-311
2024-06-17T15:45:56,503   creating build/temp.linux-armv7l-cpython-311/moleculekit
2024-06-17T15:45:56,504   creating build/temp.linux-armv7l-cpython-311/moleculekit/interactions
2024-06-17T15:45:56,506   creating build/temp.linux-armv7l-cpython-311/moleculekit/interactions/hbonds
2024-06-17T15:45:56,507   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-f6ac6bbc/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c moleculekit/interactions/hbonds/hbonds.cpp -o build/temp.linux-armv7l-cpython-311/moleculekit/interactions/hbonds/hbonds.o -O3
2024-06-17T15:45:57,902   In file included from /tmp/pip-build-env-f6ac6bbc/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2024-06-17T15:45:57,903                    from /tmp/pip-build-env-f6ac6bbc/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2024-06-17T15:45:57,904                    from /tmp/pip-build-env-f6ac6bbc/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h:5,
2024-06-17T15:45:57,904                    from moleculekit/interactions/hbonds/hbonds.cpp:1265:
2024-06-17T15:45:57,905   /tmp/pip-build-env-f6ac6bbc/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2024-06-17T15:45:57,905      17 | #warning "Using deprecated NumPy API, disable it with " \
2024-06-17T15:45:57,906         |  ^~~~~~~
2024-06-17T15:46:25,731   In function ‘PyObject* __pyx_pf_11moleculekit_12interactions_6hbonds_calculate(PyObject*, PyArrayObject*, PyArrayObject*, PyArrayObject*, PyArrayObject*, PyArrayObject*, PyArrayObject*, float, float, bool, bool)’,
2024-06-17T15:46:25,867       inlined from ‘PyObject* __pyx_pw_11moleculekit_12interactions_6hbonds_1calculate(PyObject*, PyObject* const*, Py_ssize_t, PyObject*)’ at moleculekit/interactions/hbonds/hbonds.cpp:19989:68:
2024-06-17T15:46:25,894   moleculekit/interactions/hbonds/hbonds.cpp:21019:52: warning: ‘__pyx_v_d_idx_h’ may be used uninitialized [-Wmaybe-uninitialized]
2024-06-17T15:46:25,911   21019 |             (__pyx_v_results[__pyx_v_f]).push_back(__pyx_v_d_idx_h);
2024-06-17T15:46:25,927         |                                                    ^~~~~~~~~~~~~~~
2024-06-17T15:46:25,927   moleculekit/interactions/hbonds/hbonds.cpp: In function ‘PyObject* __pyx_pw_11moleculekit_12interactions_6hbonds_1calculate(PyObject*, PyObject* const*, Py_ssize_t, PyObject*)’:
2024-06-17T15:46:25,928   moleculekit/interactions/hbonds/hbonds.cpp:20032:57: note: ‘__pyx_v_d_idx_h’ was declared here
2024-06-17T15:46:25,929   20032 |   __pyx_t_11moleculekit_12interactions_6hbonds_UINT32_t __pyx_v_d_idx_h;
2024-06-17T15:46:25,929         |                                                         ^~~~~~~~~~~~~~~
2024-06-17T15:46:29,730   arm-linux-gnueabihf-g++ -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/moleculekit/interactions/hbonds/hbonds.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/moleculekit/interactions/hbonds.cpython-311-arm-linux-gnueabihf.so
2024-06-17T15:46:30,367   building 'moleculekit.interactions.pipi' extension
2024-06-17T15:46:30,368   creating build/temp.linux-armv7l-cpython-311/moleculekit/interactions/pipi
2024-06-17T15:46:30,369   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-f6ac6bbc/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c moleculekit/interactions/pipi/pipi.cpp -o build/temp.linux-armv7l-cpython-311/moleculekit/interactions/pipi/pipi.o -O3
2024-06-17T15:46:30,751   In file included from /tmp/pip-build-env-f6ac6bbc/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2024-06-17T15:46:30,752                    from /tmp/pip-build-env-f6ac6bbc/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2024-06-17T15:46:30,753                    from /tmp/pip-build-env-f6ac6bbc/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h:5,
2024-06-17T15:46:30,753                    from moleculekit/interactions/pipi/pipi.cpp:1265:
2024-06-17T15:46:30,754   /tmp/pip-build-env-f6ac6bbc/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2024-06-17T15:46:30,755      17 | #warning "Using deprecated NumPy API, disable it with " \
2024-06-17T15:46:30,755         |  ^~~~~~~
2024-06-17T15:47:04,218   arm-linux-gnueabihf-g++ -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/moleculekit/interactions/pipi/pipi.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/moleculekit/interactions/pipi.cpython-311-arm-linux-gnueabihf.so
2024-06-17T15:47:04,523   building 'moleculekit.interactions.cationpi' extension
2024-06-17T15:47:04,524   creating build/temp.linux-armv7l-cpython-311/moleculekit/interactions/cationpi
2024-06-17T15:47:04,525   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-f6ac6bbc/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c moleculekit/interactions/cationpi/cationpi.cpp -o build/temp.linux-armv7l-cpython-311/moleculekit/interactions/cationpi/cationpi.o -O3
2024-06-17T15:47:06,723   In file included from /tmp/pip-build-env-f6ac6bbc/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2024-06-17T15:47:06,724                    from /tmp/pip-build-env-f6ac6bbc/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2024-06-17T15:47:06,724                    from /tmp/pip-build-env-f6ac6bbc/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h:5,
2024-06-17T15:47:06,725                    from moleculekit/interactions/cationpi/cationpi.cpp:1265:
2024-06-17T15:47:06,726   /tmp/pip-build-env-f6ac6bbc/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2024-06-17T15:47:06,727      17 | #warning "Using deprecated NumPy API, disable it with " \
2024-06-17T15:47:06,727         |  ^~~~~~~
2024-06-17T15:47:39,088   arm-linux-gnueabihf-g++ -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/moleculekit/interactions/cationpi/cationpi.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/moleculekit/interactions/cationpi.cpython-311-arm-linux-gnueabihf.so
2024-06-17T15:47:39,434   building 'moleculekit.interactions.sigmahole' extension
2024-06-17T15:47:39,434   creating build/temp.linux-armv7l-cpython-311/moleculekit/interactions/sigmahole
2024-06-17T15:47:39,435   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-f6ac6bbc/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c moleculekit/interactions/sigmahole/sigmahole.cpp -o build/temp.linux-armv7l-cpython-311/moleculekit/interactions/sigmahole/sigmahole.o -O3
2024-06-17T15:47:39,786   In file included from /tmp/pip-build-env-f6ac6bbc/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2024-06-17T15:47:39,786                    from /tmp/pip-build-env-f6ac6bbc/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2024-06-17T15:47:39,787                    from /tmp/pip-build-env-f6ac6bbc/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h:5,
2024-06-17T15:47:39,788                    from moleculekit/interactions/sigmahole/sigmahole.cpp:1265:
2024-06-17T15:47:39,789   /tmp/pip-build-env-f6ac6bbc/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2024-06-17T15:47:39,789      17 | #warning "Using deprecated NumPy API, disable it with " \
2024-06-17T15:47:39,790         |  ^~~~~~~
2024-06-17T15:48:11,902   arm-linux-gnueabihf-g++ -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/moleculekit/interactions/sigmahole/sigmahole.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/moleculekit/interactions/sigmahole.cpython-311-arm-linux-gnueabihf.so
2024-06-17T15:48:12,252   building 'moleculekit.wrapping' extension
2024-06-17T15:48:12,253   creating build/temp.linux-armv7l-cpython-311/moleculekit/wrapping
2024-06-17T15:48:12,253   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-f6ac6bbc/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c moleculekit/wrapping/wrapping.cpp -o build/temp.linux-armv7l-cpython-311/moleculekit/wrapping/wrapping.o -O3
2024-06-17T15:48:12,567   In file included from /tmp/pip-build-env-f6ac6bbc/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2024-06-17T15:48:12,568                    from /tmp/pip-build-env-f6ac6bbc/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2024-06-17T15:48:12,569                    from /tmp/pip-build-env-f6ac6bbc/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h:5,
2024-06-17T15:48:12,570                    from moleculekit/wrapping/wrapping.cpp:1265:
2024-06-17T15:48:12,570   /tmp/pip-build-env-f6ac6bbc/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2024-06-17T15:48:12,571      17 | #warning "Using deprecated NumPy API, disable it with " \
2024-06-17T15:48:12,572         |  ^~~~~~~
2024-06-17T15:48:42,989   arm-linux-gnueabihf-g++ -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/moleculekit/wrapping/wrapping.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/moleculekit/wrapping.cpython-311-arm-linux-gnueabihf.so
2024-06-17T15:48:43,191   building 'moleculekit.bondguesser_utils' extension
2024-06-17T15:48:43,192   creating build/temp.linux-armv7l-cpython-311/moleculekit/bondguesser_utils
2024-06-17T15:48:43,192   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-f6ac6bbc/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c moleculekit/bondguesser_utils/bondguesser_utils.cpp -o build/temp.linux-armv7l-cpython-311/moleculekit/bondguesser_utils/bondguesser_utils.o -O3
2024-06-17T15:48:43,510   In file included from /tmp/pip-build-env-f6ac6bbc/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2024-06-17T15:48:43,510                    from /tmp/pip-build-env-f6ac6bbc/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2024-06-17T15:48:43,511                    from /tmp/pip-build-env-f6ac6bbc/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h:5,
2024-06-17T15:48:43,511                    from moleculekit/bondguesser_utils/bondguesser_utils.cpp:1265:
2024-06-17T15:48:43,512   /tmp/pip-build-env-f6ac6bbc/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2024-06-17T15:48:43,513      17 | #warning "Using deprecated NumPy API, disable it with " \
2024-06-17T15:48:43,513         |  ^~~~~~~
2024-06-17T15:48:45,816   moleculekit/bondguesser_utils/bondguesser_utils.cpp: In function ‘PyObject* __pyx_pf_11moleculekit_17bondguesser_utils_make_grid_neighborlist_nonperiodic(PyObject*, __Pyx_memviewslice, __pyx_t_11moleculekit_17bondguesser_utils_UINT32_t, __pyx_t_11moleculekit_17bondguesser_utils_UINT32_t, __pyx_t_11moleculekit_17bondguesser_utils_UINT32_t)’:
2024-06-17T15:48:45,817   moleculekit/bondguesser_utils/bondguesser_utils.cpp:19801:33: warning: comparison of integer expressions of different signedness: ‘int’ and ‘__pyx_t_11moleculekit_17bondguesser_utils_UINT32_t’ {aka ‘long unsigned int’} [-Wsign-compare]
2024-06-17T15:48:45,818   19801 |   for (__pyx_t_3 = 0; __pyx_t_3 < __pyx_t_2; __pyx_t_3+=1) {
2024-06-17T15:48:45,818         |                       ~~~~~~~~~~^~~~~~~~~~~
2024-06-17T15:48:45,819   moleculekit/bondguesser_utils/bondguesser_utils.cpp:19813:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘__pyx_t_11moleculekit_17bondguesser_utils_UINT32_t’ {aka ‘long unsigned int’} [-Wsign-compare]
2024-06-17T15:48:45,820   19813 |     for (__pyx_t_6 = 0; __pyx_t_6 < __pyx_t_5; __pyx_t_6+=1) {
2024-06-17T15:48:45,820         |                         ~~~~~~~~~~^~~~~~~~~~~
2024-06-17T15:48:45,821   moleculekit/bondguesser_utils/bondguesser_utils.cpp:19825:37: warning: comparison of integer expressions of different signedness: ‘int’ and ‘__pyx_t_11moleculekit_17bondguesser_utils_UINT32_t’ {aka ‘long unsigned int’} [-Wsign-compare]
2024-06-17T15:48:45,822   19825 |       for (__pyx_t_9 = 0; __pyx_t_9 < __pyx_t_8; __pyx_t_9+=1) {
2024-06-17T15:48:45,822         |                           ~~~~~~~~~~^~~~~~~~~~~
2024-06-17T15:48:45,823   moleculekit/bondguesser_utils/bondguesser_utils.cpp:19864:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-06-17T15:48:45,824   19864 |         __pyx_t_12 = (__pyx_v_xi < (__pyx_v_xboxes - 1));
2024-06-17T15:48:45,825         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-06-17T15:48:45,825   moleculekit/bondguesser_utils/bondguesser_utils.cpp:19903:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-06-17T15:48:45,826   19903 |         __pyx_t_12 = (__pyx_v_yi < (__pyx_v_yboxes - 1));
2024-06-17T15:48:45,826         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-06-17T15:48:45,827   moleculekit/bondguesser_utils/bondguesser_utils.cpp:19942:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-06-17T15:48:45,828   19942 |         __pyx_t_12 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2024-06-17T15:48:45,828         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-06-17T15:48:45,829   moleculekit/bondguesser_utils/bondguesser_utils.cpp:19981:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-06-17T15:48:45,830   19981 |         __pyx_t_13 = (__pyx_v_xi < (__pyx_v_xboxes - 1));
2024-06-17T15:48:45,830         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-06-17T15:48:45,831   moleculekit/bondguesser_utils/bondguesser_utils.cpp:19987:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-06-17T15:48:45,831   19987 |         __pyx_t_13 = (__pyx_v_yi < (__pyx_v_yboxes - 1));
2024-06-17T15:48:45,832         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-06-17T15:48:45,833   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20028:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-06-17T15:48:45,833   20028 |         __pyx_t_13 = (__pyx_v_xi < (__pyx_v_xboxes - 1));
2024-06-17T15:48:45,834         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-06-17T15:48:45,835   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20034:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-06-17T15:48:45,835   20034 |         __pyx_t_13 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2024-06-17T15:48:45,836         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-06-17T15:48:45,837   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20075:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-06-17T15:48:45,838   20075 |         __pyx_t_13 = (__pyx_v_yi < (__pyx_v_yboxes - 1));
2024-06-17T15:48:45,838         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-06-17T15:48:45,839   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20081:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-06-17T15:48:45,839   20081 |         __pyx_t_13 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2024-06-17T15:48:45,840         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-06-17T15:48:45,841   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20122:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-06-17T15:48:45,841   20122 |         __pyx_t_13 = (__pyx_v_xi < (__pyx_v_xboxes - 1));
2024-06-17T15:48:45,842         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-06-17T15:48:45,843   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20175:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-06-17T15:48:45,844   20175 |         __pyx_t_13 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2024-06-17T15:48:45,845         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-06-17T15:48:45,846   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20222:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-06-17T15:48:45,846   20222 |         __pyx_t_13 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2024-06-17T15:48:45,847         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-06-17T15:48:45,848   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20263:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-06-17T15:48:45,848   20263 |         __pyx_t_13 = (__pyx_v_xi < (__pyx_v_xboxes - 1));
2024-06-17T15:48:45,849         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-06-17T15:48:45,849   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20269:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-06-17T15:48:45,850   20269 |         __pyx_t_13 = (__pyx_v_yi < (__pyx_v_yboxes - 1));
2024-06-17T15:48:45,850         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-06-17T15:48:45,851   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20275:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-06-17T15:48:45,852   20275 |         __pyx_t_13 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2024-06-17T15:48:45,852         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-06-17T15:48:45,853   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20322:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-06-17T15:48:45,854   20322 |         __pyx_t_13 = (__pyx_v_yi < (__pyx_v_yboxes - 1));
2024-06-17T15:48:45,854         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-06-17T15:48:45,855   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20328:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-06-17T15:48:45,855   20328 |         __pyx_t_13 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2024-06-17T15:48:45,856         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-06-17T15:48:45,857   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20369:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-06-17T15:48:45,857   20369 |         __pyx_t_13 = (__pyx_v_xi < (__pyx_v_xboxes - 1));
2024-06-17T15:48:45,858         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-06-17T15:48:45,859   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20381:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-06-17T15:48:45,859   20381 |         __pyx_t_13 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2024-06-17T15:48:45,860         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-06-17T15:48:45,861   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20434:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-06-17T15:48:45,862   20434 |         __pyx_t_13 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2024-06-17T15:48:45,862         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-06-17T15:48:45,887   moleculekit/bondguesser_utils/bondguesser_utils.cpp: In function ‘PyObject* __pyx_pf_11moleculekit_17bondguesser_utils_2grid_bonds(PyObject*, __Pyx_memviewslice, __Pyx_memviewslice, __Pyx_memviewslice, float, int, __Pyx_memviewslice, __Pyx_memviewslice)’:
2024-06-17T15:48:45,888   moleculekit/bondguesser_utils/bondguesser_utils.cpp:21056:37: warning: comparison of integer expressions of different signedness: ‘__pyx_t_11moleculekit_17bondguesser_utils_UINT32_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
2024-06-17T15:48:45,889   21056 |       __pyx_t_6 = (__pyx_v_boxneigh == __pyx_v_n_boxes);
2024-06-17T15:48:45,890         |                    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
2024-06-17T15:48:45,890   moleculekit/bondguesser_utils/bondguesser_utils.cpp:21093:37: warning: comparison of integer expressions of different signedness: ‘__pyx_t_11moleculekit_17bondguesser_utils_UINT32_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
2024-06-17T15:48:45,891   21093 |       __pyx_t_6 = (__pyx_v_boxneigh == __pyx_v_boxidx);
2024-06-17T15:48:45,891         |                    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
2024-06-17T15:49:12,523   arm-linux-gnueabihf-g++ -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/moleculekit/bondguesser_utils/bondguesser_utils.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/moleculekit/bondguesser_utils.cpython-311-arm-linux-gnueabihf.so
2024-06-17T15:49:12,821   building 'moleculekit.atomselect_utils' extension
2024-06-17T15:49:12,821   creating build/temp.linux-armv7l-cpython-311/moleculekit/atomselect_utils
2024-06-17T15:49:12,822   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-f6ac6bbc/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c moleculekit/atomselect_utils/atomselect_utils.cpp -o build/temp.linux-armv7l-cpython-311/moleculekit/atomselect_utils/atomselect_utils.o -O3
2024-06-17T15:49:13,144   In file included from /tmp/pip-build-env-f6ac6bbc/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2024-06-17T15:49:13,145                    from /tmp/pip-build-env-f6ac6bbc/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2024-06-17T15:49:13,145                    from /tmp/pip-build-env-f6ac6bbc/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h:5,
2024-06-17T15:49:13,146                    from moleculekit/atomselect_utils/atomselect_utils.cpp:1282:
2024-06-17T15:49:13,147   /tmp/pip-build-env-f6ac6bbc/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2024-06-17T15:49:13,147      17 | #warning "Using deprecated NumPy API, disable it with " \
2024-06-17T15:49:13,148         |  ^~~~~~~
2024-06-17T15:49:15,706   moleculekit/atomselect_utils/atomselect_utils.cpp: In function ‘bool __pyx_f_11moleculekit_16atomselect_utils__find_connected_subfragment(int, int, const char*, const char*, const char*, __Pyx_memviewslice, __Pyx_memviewslice, __Pyx_memviewslice, std::vector<std::__cxx11::basic_string<char> >&, __Pyx_memviewslice, std::vector<std::vector<int> >&, std::vector<std::vector<int> >&, std::vector<std::vector<int> >&)’:
2024-06-17T15:49:15,707   moleculekit/atomselect_utils/atomselect_utils.cpp:23255:161: warning: comparison of integer expressions of different signedness: ‘__pyx_t_11moleculekit_16atomselect_utils_UINT32_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
2024-06-17T15:49:15,708   23255 |       __pyx_t_3 = ((*((__pyx_t_11moleculekit_16atomselect_utils_UINT32_t *) ( /* dim=0 */ (__pyx_v_uq_resid.data + __pyx_t_2 * __pyx_v_uq_resid.strides[0]) ))) != __pyx_v_resnum);
2024-06-17T15:49:15,743         |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
2024-06-17T15:49:15,744   moleculekit/atomselect_utils/atomselect_utils.cpp: In function ‘bool __pyx_f_11moleculekit_16atomselect_utils__find_subfragments(int, std::vector<std::vector<int> >&, std::vector<std::vector<int> >&, __Pyx_memviewslice, __Pyx_memviewslice, __Pyx_memviewslice, std::vector<std::__cxx11::basic_string<char> >&, __Pyx_memviewslice, std::vector<std::vector<int> >&)’:
2024-06-17T15:49:15,745   moleculekit/atomselect_utils/atomselect_utils.cpp:23507:163: warning: comparison of integer expressions of different signedness: ‘__pyx_t_11moleculekit_16atomselect_utils_UINT32_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
2024-06-17T15:49:15,746   23507 |         __pyx_t_6 = ((*((__pyx_t_11moleculekit_16atomselect_utils_UINT32_t *) ( /* dim=0 */ (__pyx_v_uq_resid.data + __pyx_t_5 * __pyx_v_uq_resid.strides[0]) ))) != __pyx_v_i);
2024-06-17T15:49:15,746         |                      ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2024-06-17T15:49:15,747   moleculekit/atomselect_utils/atomselect_utils.cpp: In function ‘bool __pyx_f_11moleculekit_16atomselect_utils__find_subfragments_topologically(int, std::vector<std::vector<int> >&, std::vector<std::vector<int> >&, __Pyx_memviewslice, __Pyx_memviewslice, __Pyx_memviewslice, std::vector<std::__cxx11::basic_string<char> >&, __Pyx_memviewslice, std::vector<std::vector<int> >&)’:
2024-06-17T15:49:15,748   moleculekit/atomselect_utils/atomselect_utils.cpp:23774:163: warning: comparison of integer expressions of different signedness: ‘__pyx_t_11moleculekit_16atomselect_utils_UINT32_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
2024-06-17T15:49:15,748   23774 |         __pyx_t_6 = ((*((__pyx_t_11moleculekit_16atomselect_utils_UINT32_t *) ( /* dim=0 */ (__pyx_v_uq_resid.data + __pyx_t_5 * __pyx_v_uq_resid.strides[0]) ))) != __pyx_v_i);
2024-06-17T15:49:15,749         |                      ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2024-06-17T15:49:50,318   arm-linux-gnueabihf-g++ -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/moleculekit/atomselect_utils/atomselect_utils.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/moleculekit/atomselect_utils.cpython-311-arm-linux-gnueabihf.so
2024-06-17T15:49:50,626   building 'moleculekit.distance_utils' extension
2024-06-17T15:49:50,627   creating build/temp.linux-armv7l-cpython-311/moleculekit/distance_utils
2024-06-17T15:49:50,627   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-f6ac6bbc/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c moleculekit/distance_utils/distance_utils.cpp -o build/temp.linux-armv7l-cpython-311/moleculekit/distance_utils/distance_utils.o -O3
2024-06-17T15:49:51,213   In file included from /tmp/pip-build-env-f6ac6bbc/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2024-06-17T15:49:51,213                    from /tmp/pip-build-env-f6ac6bbc/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2024-06-17T15:49:51,214                    from /tmp/pip-build-env-f6ac6bbc/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h:5,
2024-06-17T15:49:51,215                    from moleculekit/distance_utils/distance_utils.cpp:1265:
2024-06-17T15:49:51,216   /tmp/pip-build-env-f6ac6bbc/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2024-06-17T15:49:51,216      17 | #warning "Using deprecated NumPy API, disable it with " \
2024-06-17T15:49:51,217         |  ^~~~~~~
2024-06-17T15:49:53,614   moleculekit/distance_utils/distance_utils.cpp: In function ‘PyObject* __pyx_pf_11moleculekit_14distance_utils_2get_collisions(PyObject*, __Pyx_memviewslice, __Pyx_memviewslice, float)’:
2024-06-17T15:49:53,615   moleculekit/distance_utils/distance_utils.cpp:21359:33: warning: comparison of integer expressions of different signedness: ‘__pyx_t_11moleculekit_14distance_utils_UINT32_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
2024-06-17T15:49:53,616   21359 |   for (__pyx_t_3 = 0; __pyx_t_3 < __pyx_t_2; __pyx_t_3+=1) {
2024-06-17T15:49:53,617         |                       ~~~~~~~~~~^~~~~~~~~~~
2024-06-17T15:49:53,617   moleculekit/distance_utils/distance_utils.cpp:21371:35: warning: comparison of integer expressions of different signedness: ‘__pyx_t_11moleculekit_14distance_utils_UINT32_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
2024-06-17T15:49:53,618   21371 |     for (__pyx_t_6 = 0; __pyx_t_6 < __pyx_t_5; __pyx_t_6+=1) {
2024-06-17T15:49:53,619         |                         ~~~~~~~~~~^~~~~~~~~~~
2024-06-17T15:50:31,135   arm-linux-gnueabihf-g++ -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/moleculekit/distance_utils/distance_utils.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/moleculekit/distance_utils.cpython-311-arm-linux-gnueabihf.so
2024-06-17T15:50:31,487   building 'moleculekit.occupancy_utils' extension
2024-06-17T15:50:31,487   creating build/temp.linux-armv7l-cpython-311/moleculekit/occupancy_utils
2024-06-17T15:50:31,488   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-f6ac6bbc/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c moleculekit/occupancy_utils/occupancy_utils.cpp -o build/temp.linux-armv7l-cpython-311/moleculekit/occupancy_utils/occupancy_utils.o -O3
2024-06-17T15:50:31,807   In file included from /tmp/pip-build-env-f6ac6bbc/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2024-06-17T15:50:31,808                    from /tmp/pip-build-env-f6ac6bbc/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2024-06-17T15:50:31,808                    from /tmp/pip-build-env-f6ac6bbc/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h:5,
2024-06-17T15:50:31,809                    from moleculekit/occupancy_utils/occupancy_utils.cpp:1265:
2024-06-17T15:50:31,810   /tmp/pip-build-env-f6ac6bbc/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2024-06-17T15:50:31,810      17 | #warning "Using deprecated NumPy API, disable it with " \
2024-06-17T15:50:31,811         |  ^~~~~~~
2024-06-17T15:50:59,141   arm-linux-gnueabihf-g++ -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/moleculekit/occupancy_utils/occupancy_utils.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/moleculekit/occupancy_utils.cpython-311-arm-linux-gnueabihf.so
2024-06-17T15:50:59,347   building 'moleculekit.cython_utils' extension
2024-06-17T15:50:59,348   creating build/temp.linux-armv7l-cpython-311/moleculekit/cython_utils
2024-06-17T15:50:59,349   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-f6ac6bbc/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c moleculekit/cython_utils/cython_utils.cpp -o build/temp.linux-armv7l-cpython-311/moleculekit/cython_utils/cython_utils.o -O3
2024-06-17T15:50:59,666   In file included from /tmp/pip-build-env-f6ac6bbc/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2024-06-17T15:50:59,667                    from /tmp/pip-build-env-f6ac6bbc/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2024-06-17T15:50:59,668                    from /tmp/pip-build-env-f6ac6bbc/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h:5,
2024-06-17T15:50:59,668                    from moleculekit/cython_utils/cython_utils.cpp:1265:
2024-06-17T15:50:59,669   /tmp/pip-build-env-f6ac6bbc/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2024-06-17T15:50:59,669      17 | #warning "Using deprecated NumPy API, disable it with " \
2024-06-17T15:50:59,670         |  ^~~~~~~
2024-06-17T15:51:29,837   arm-linux-gnueabihf-g++ -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/moleculekit/cython_utils/cython_utils.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/moleculekit/cython_utils.cpython-311-arm-linux-gnueabihf.so
2024-06-17T15:51:30,123   building 'moleculekit.xtc' extension
2024-06-17T15:51:30,124   creating build/temp.linux-armv7l-cpython-311/moleculekit/fileformats
2024-06-17T15:51:30,124   creating build/temp.linux-armv7l-cpython-311/moleculekit/fileformats/xtc
2024-06-17T15:51:30,125   creating build/temp.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/src
2024-06-17T15:51:30,127   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/fileformats/xtc -Imoleculekit/fileformats/xtc/include/ -Imoleculekit/fileformats/xtc/ -I/tmp/pip-build-env-f6ac6bbc/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c moleculekit/fileformats/xtc/src/xdrfile.cpp -o build/temp.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/src/xdrfile.o
2024-06-17T15:51:30,769   moleculekit/fileformats/xtc/src/xdrfile.cpp:66:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-06-17T15:51:30,770      66 |         "OK",
2024-06-17T15:51:30,771         |         ^~~~
2024-06-17T15:51:30,771   moleculekit/fileformats/xtc/src/xdrfile.cpp:67:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-06-17T15:51:30,772      67 |         "Header",
2024-06-17T15:51:30,773         |         ^~~~~~~~
2024-06-17T15:51:30,774   moleculekit/fileformats/xtc/src/xdrfile.cpp:68:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-06-17T15:51:30,774      68 |         "String",
2024-06-17T15:51:30,775         |         ^~~~~~~~
2024-06-17T15:51:30,776   moleculekit/fileformats/xtc/src/xdrfile.cpp:69:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-06-17T15:51:30,777      69 |         "Double",
2024-06-17T15:51:30,778         |         ^~~~~~~~
2024-06-17T15:51:30,778   moleculekit/fileformats/xtc/src/xdrfile.cpp:70:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-06-17T15:51:30,779      70 |         "Integer",
2024-06-17T15:51:30,780         |         ^~~~~~~~~
2024-06-17T15:51:30,781   moleculekit/fileformats/xtc/src/xdrfile.cpp:71:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-06-17T15:51:30,781      71 |         "Float",
2024-06-17T15:51:30,782         |         ^~~~~~~
2024-06-17T15:51:30,783   moleculekit/fileformats/xtc/src/xdrfile.cpp:72:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-06-17T15:51:30,784      72 |         "Unsigned integer",
2024-06-17T15:51:30,785         |         ^~~~~~~~~~~~~~~~~~
2024-06-17T15:51:30,786   moleculekit/fileformats/xtc/src/xdrfile.cpp:73:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-06-17T15:51:30,787      73 |         "Compressed 3D coordinate",
2024-06-17T15:51:30,787         |         ^~~~~~~~~~~~~~~~~~~~~~~~~~
2024-06-17T15:51:30,788   moleculekit/fileformats/xtc/src/xdrfile.cpp:74:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-06-17T15:51:30,789      74 |         "Closing file",
2024-06-17T15:51:30,791         |         ^~~~~~~~~~~~~~
2024-06-17T15:51:30,791   moleculekit/fileformats/xtc/src/xdrfile.cpp:75:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-06-17T15:51:30,792      75 |         "Magic number",
2024-06-17T15:51:30,793         |         ^~~~~~~~~~~~~~
2024-06-17T15:51:30,793   moleculekit/fileformats/xtc/src/xdrfile.cpp:76:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-06-17T15:51:30,794      76 |         "Not enough memory",
2024-06-17T15:51:30,794         |         ^~~~~~~~~~~~~~~~~~~
2024-06-17T15:51:30,795   moleculekit/fileformats/xtc/src/xdrfile.cpp:77:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-06-17T15:51:30,796      77 |         "End of file",
2024-06-17T15:51:30,797         |         ^~~~~~~~~~~~~
2024-06-17T15:51:30,798   moleculekit/fileformats/xtc/src/xdrfile.cpp:78:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-06-17T15:51:30,798      78 |         "File not found"
2024-06-17T15:51:30,799         |         ^~~~~~~~~~~~~~~~
2024-06-17T15:51:30,800   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘int sizeofint(int)’:
2024-06-17T15:51:30,801   moleculekit/fileformats/xtc/src/xdrfile.cpp:459:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-06-17T15:51:30,801     459 |     while (size >= num && num_of_bits < 32)
2024-06-17T15:51:30,802         |            ~~~~~^~~~~~
2024-06-17T15:51:30,803   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘int sizeofints(int, unsigned int*)’:
2024-06-17T15:51:30,804   moleculekit/fileformats/xtc/src/xdrfile.cpp:505:32: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-06-17T15:51:30,804     505 |     while (bytes[num_of_bytes] >= num)
2024-06-17T15:51:30,805         |            ~~~~~~~~~~~~~~~~~~~~^~~~~~
2024-06-17T15:51:30,806   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘void encodeints(int*, int, int, unsigned int*, unsigned int*)’:
2024-06-17T15:51:30,806   moleculekit/fileformats/xtc/src/xdrfile.cpp:614:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-06-17T15:51:30,807     614 |     if (num_of_bits >= num_of_bytes * 8)
2024-06-17T15:51:30,808         |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
2024-06-17T15:51:30,809   moleculekit/fileformats/xtc/src/xdrfile.cpp:616:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-06-17T15:51:30,809     616 |                 for (i = 0; i < num_of_bytes; i++)
2024-06-17T15:51:30,810         |                             ~~^~~~~~~~~~~~~~
2024-06-17T15:51:30,811   moleculekit/fileformats/xtc/src/xdrfile.cpp:624:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-06-17T15:51:30,811     624 |                 for (i = 0; i < num_of_bytes-1; i++)
2024-06-17T15:51:30,817         |                             ~~^~~~~~~~~~~~~~~~
2024-06-17T15:51:30,817   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘int decodebits(int*, int)’:
2024-06-17T15:51:30,818   moleculekit/fileformats/xtc/src/xdrfile.cpp:664:30: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-06-17T15:51:30,819     664 |                 if (lastbits < num_of_bits)
2024-06-17T15:51:30,820         |                     ~~~~~~~~~^~~~~~~~~~~~~
2024-06-17T15:51:30,820   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘int xdrfile_decompress_coord_float(float*, int*, float*, XDRFILE*)’:
2024-06-17T15:51:30,821   moleculekit/fileformats/xtc/src/xdrfile.cpp:785:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-06-17T15:51:30,822     785 |         if(size3>xfp->buf1size)
2024-06-17T15:51:30,823         |            ~~~~~^~~~~~~~~~~~~~
2024-06-17T15:51:30,823   moleculekit/fileformats/xtc/src/xdrfile.cpp:842:26: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-06-17T15:51:30,824     842 |         maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2024-06-17T15:51:30,824         |                          ^
2024-06-17T15:51:30,825   moleculekit/fileformats/xtc/src/xdrfile.cpp:932:45: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-06-17T15:51:30,825     932 |                                 if(countmjh >= size3 ) { return -1; }
2024-06-17T15:51:30,826         |                                    ~~~~~~~~~^~~~~~~~
2024-06-17T15:51:30,827   moleculekit/fileformats/xtc/src/xdrfile.cpp:935:45: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-06-17T15:51:30,827     935 |                                 if(countmjh >= size3 ) { return -1; }
2024-06-17T15:51:30,828         |                                    ~~~~~~~~~^~~~~~~~
2024-06-17T15:51:30,829   moleculekit/fileformats/xtc/src/xdrfile.cpp:938:45: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-06-17T15:51:30,829     938 |                                 if(countmjh >= size3 ) { return -1; }
2024-06-17T15:51:30,830         |                                    ~~~~~~~~~^~~~~~~~
2024-06-17T15:51:30,830   moleculekit/fileformats/xtc/src/xdrfile.cpp:945:45: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-06-17T15:51:30,831     945 |                                 if(countmjh >= size3 ) { return -1; }
2024-06-17T15:51:30,832         |                                    ~~~~~~~~~^~~~~~~~
2024-06-17T15:51:30,833   moleculekit/fileformats/xtc/src/xdrfile.cpp:948:45: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-06-17T15:51:30,833     948 |                                 if(countmjh >= size3 ) { return -1; }
2024-06-17T15:51:30,834         |                                    ~~~~~~~~~^~~~~~~~
2024-06-17T15:51:30,835   moleculekit/fileformats/xtc/src/xdrfile.cpp:951:45: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-06-17T15:51:30,835     951 |                                 if(countmjh >= size3 ) { return -1; }
2024-06-17T15:51:30,836         |                                    ~~~~~~~~~^~~~~~~~
2024-06-17T15:51:30,837   moleculekit/fileformats/xtc/src/xdrfile.cpp:756:24: warning: variable ‘minidx’ set but not used [-Wunused-but-set-variable]
2024-06-17T15:51:30,837     756 |         int smallidx,  minidx, maxidx;
2024-06-17T15:51:30,838         |                        ^~~~~~
2024-06-17T15:51:30,839   moleculekit/fileformats/xtc/src/xdrfile.cpp:759:32: warning: variable ‘larger’ set but not used [-Wunused-but-set-variable]
2024-06-17T15:51:30,839     759 |         int smallnum, smaller, larger, i, is_smaller, run;
2024-06-17T15:51:30,840         |                                ^~~~~~
2024-06-17T15:51:30,841   moleculekit/fileformats/xtc/src/xdrfile.cpp:763:13: warning: unused variable ‘errval’ [-Wunused-variable]
2024-06-17T15:51:30,841     763 |         int errval=1;
2024-06-17T15:51:30,842         |             ^~~~~~
2024-06-17T15:51:30,843   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘int xdrfile_compress_coord_float(float*, int, float, XDRFILE*)’:
2024-06-17T15:51:30,843   moleculekit/fileformats/xtc/src/xdrfile.cpp:1011:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-06-17T15:51:30,844    1011 |         if(size3>xfp->buf1size)
2024-06-17T15:51:30,845         |            ~~~~~^~~~~~~~~~~~~~
2024-06-17T15:51:30,846   moleculekit/fileformats/xtc/src/xdrfile.cpp:1068:41: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-06-17T15:51:30,846    1068 |                 countmjh++; if( countmjh> size3) { return -1; }
2024-06-17T15:51:30,847         |                                 ~~~~~~~~^~~~~~~
2024-06-17T15:51:30,847   moleculekit/fileformats/xtc/src/xdrfile.cpp:1084:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-06-17T15:51:30,848    1084 |           countmjh++; if( countmjh> size3) { return -1; }
2024-06-17T15:51:30,848         |                           ~~~~~~~~^~~~~~~
2024-06-17T15:51:30,849   moleculekit/fileformats/xtc/src/xdrfile.cpp:1098:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-06-17T15:51:30,850    1098 |           countmjh++; if( countmjh> size3) { return -1; }
2024-06-17T15:51:30,850         |                           ~~~~~~~~^~~~~~~
2024-06-17T15:51:30,851   moleculekit/fileformats/xtc/src/xdrfile.cpp:1137:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-06-17T15:51:30,851    1137 |         while (smallidx < LASTIDX && magicints[smallidx] < mindiff)
2024-06-17T15:51:30,852         |                         ^
2024-06-17T15:51:30,852   moleculekit/fileformats/xtc/src/xdrfile.cpp:1143:26: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-06-17T15:51:30,853    1143 |         maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2024-06-17T15:51:30,854         |                          ^
2024-06-17T15:51:30,855   moleculekit/fileformats/xtc/src/xdrfile.cpp:1275:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-06-17T15:51:30,856    1275 |         if(tmp==(unsigned int)buf2[0])
2024-06-17T15:51:30,856         |            ~~~^~~~~~~~~~~~~~~~~~~~~~~
2024-06-17T15:51:30,857   moleculekit/fileformats/xtc/src/xdrfile.cpp:1001:13: warning: variable ‘errval’ set but not used [-Wunused-but-set-variable]
2024-06-17T15:51:30,858    1001 |         int errval;
2024-06-17T15:51:30,858         |             ^~~~~~
2024-06-17T15:51:30,859   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘int xdrfile_decompress_coord_double(double*, int*, double*, XDRFILE*)’:
2024-06-17T15:51:30,860   moleculekit/fileformats/xtc/src/xdrfile.cpp:1316:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-06-17T15:51:30,861    1316 |         if(size3>xfp->buf1size)
2024-06-17T15:51:30,861         |            ~~~~~^~~~~~~~~~~~~~
2024-06-17T15:51:30,862   moleculekit/fileformats/xtc/src/xdrfile.cpp:1377:26: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-06-17T15:51:30,862    1377 |         maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2024-06-17T15:51:30,863         |                          ^
2024-06-17T15:51:30,864   moleculekit/fileformats/xtc/src/xdrfile.cpp:1289:32: warning: variable ‘minidx’ set but not used [-Wunused-but-set-variable]
2024-06-17T15:51:30,864    1289 |         int smallidx,  maxidx, minidx;
2024-06-17T15:51:30,865         |                                ^~~~~~
2024-06-17T15:51:30,866   moleculekit/fileformats/xtc/src/xdrfile.cpp:1292:32: warning: variable ‘larger’ set but not used [-Wunused-but-set-variable]
2024-06-17T15:51:30,866    1292 |         int smallnum, smaller, larger, i, is_smaller, run;
2024-06-17T15:51:30,867         |                                ^~~~~~
2024-06-17T15:51:30,868   moleculekit/fileformats/xtc/src/xdrfile.cpp:1297:13: warning: unused variable ‘errval’ [-Wunused-variable]
2024-06-17T15:51:30,869    1297 |         int errval=1;
2024-06-17T15:51:30,870         |             ^~~~~~
2024-06-17T15:51:30,870   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘int xdrfile_compress_coord_double(double*, int, double, XDRFILE*)’:
2024-06-17T15:51:30,871   moleculekit/fileformats/xtc/src/xdrfile.cpp:1513:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-06-17T15:51:30,872    1513 |         if(size3>xfp->buf1size) {
2024-06-17T15:51:30,873         |            ~~~~~^~~~~~~~~~~~~~
2024-06-17T15:51:30,873   moleculekit/fileformats/xtc/src/xdrfile.cpp:1628:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-06-17T15:51:30,874    1628 |         while (smallidx < LASTIDX && magicints[smallidx] < mindiff) {
2024-06-17T15:51:30,875         |                         ^
2024-06-17T15:51:30,876   moleculekit/fileformats/xtc/src/xdrfile.cpp:1633:26: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-06-17T15:51:30,876    1633 |         maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2024-06-17T15:51:30,877         |                          ^
2024-06-17T15:51:30,878   moleculekit/fileformats/xtc/src/xdrfile.cpp:1743:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-06-17T15:51:30,879    1743 |         if(tmp==(unsigned int)buf2[0])
2024-06-17T15:51:30,880         |            ~~~^~~~~~~~~~~~~~~~~~~~~~~
2024-06-17T15:51:30,881   moleculekit/fileformats/xtc/src/xdrfile.cpp:1504:13: warning: variable ‘errval’ set but not used [-Wunused-but-set-variable]
2024-06-17T15:51:30,881    1504 |         int errval=1;
2024-06-17T15:51:30,882         |             ^~~~~~
2024-06-17T15:51:33,743   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/fileformats/xtc -Imoleculekit/fileformats/xtc/include/ -Imoleculekit/fileformats/xtc/ -I/tmp/pip-build-env-f6ac6bbc/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c moleculekit/fileformats/xtc/src/xdrfile_xtc.cpp -o build/temp.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/src/xdrfile_xtc.o
2024-06-17T15:51:34,292   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/fileformats/xtc -Imoleculekit/fileformats/xtc/include/ -Imoleculekit/fileformats/xtc/ -I/tmp/pip-build-env-f6ac6bbc/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c moleculekit/fileformats/xtc/src/xtc.cpp -o build/temp.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/src/xtc.o
2024-06-17T15:51:35,276   moleculekit/fileformats/xtc/src/xtc.cpp: In function ‘void xtc_read_new(char*, float*, float*, float*, int*, int, int)’:
2024-06-17T15:51:35,277   moleculekit/fileformats/xtc/src/xtc.cpp:234:37: warning: comparison of integer expressions of different signedness: ‘uint64_t’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare]
2024-06-17T15:51:35,278     234 |                 for (aidx = 0; aidx < natoms; aidx++)
2024-06-17T15:51:35,279         |                                ~~~~~^~~~~~~~
2024-06-17T15:51:35,285   moleculekit/fileformats/xtc/src/xtc.cpp: In function ‘int xtc_write(char*, int, int, int*, float*, float*, float*)’:
2024-06-17T15:51:35,286   moleculekit/fileformats/xtc/src/xtc.cpp:436:23: warning: comparison of integer expressions of different signedness: ‘uint64_t’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare]
2024-06-17T15:51:35,287     436 |         for (f = 0; f < nframes; f++)
2024-06-17T15:51:35,288         |                     ~~^~~~~~~~~
2024-06-17T15:51:35,288   moleculekit/fileformats/xtc/src/xtc.cpp:451:31: warning: comparison of integer expressions of different signedness: ‘uint64_t’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare]
2024-06-17T15:51:35,290     451 |                 for (i = 0; i < natoms; i++)
2024-06-17T15:51:35,290         |                             ~~^~~~~~~~
2024-06-17T15:51:35,291   moleculekit/fileformats/xtc/src/xtc.cpp: In function ‘void xtc_read_frame(char*, float*, float*, float*, int*, int, int, int, int)’:
2024-06-17T15:51:35,291   moleculekit/fileformats/xtc/src/xtc.cpp:541:45: warning: comparison of integer expressions of different signedness: ‘uint64_t’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare]
2024-06-17T15:51:35,292     541 |                         for (aidx = 0; aidx < natoms; aidx++)
2024-06-17T15:51:35,293         |                                        ~~~~~^~~~~~~~
2024-06-17T15:51:35,294   moleculekit/fileformats/xtc/src/xtc.cpp:610:45: warning: comparison of integer expressions of different signedness: ‘uint64_t’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare]
2024-06-17T15:51:35,295     610 |                         for (aidx = 0; aidx < natoms; aidx++)
2024-06-17T15:51:35,296         |                                        ~~~~~^~~~~~~~
2024-06-17T15:51:36,224   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/fileformats/xtc -Imoleculekit/fileformats/xtc/include/ -Imoleculekit/fileformats/xtc/ -I/tmp/pip-build-env-f6ac6bbc/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c moleculekit/fileformats/xtc/xtc.cpp -o build/temp.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/xtc.o
2024-06-17T15:51:36,560   In file included from /tmp/pip-build-env-f6ac6bbc/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2024-06-17T15:51:36,561                    from /tmp/pip-build-env-f6ac6bbc/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2024-06-17T15:51:36,562                    from /tmp/pip-build-env-f6ac6bbc/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h:5,
2024-06-17T15:51:36,562                    from moleculekit/fileformats/xtc/xtc.cpp:1269:
2024-06-17T15:51:36,563   /tmp/pip-build-env-f6ac6bbc/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2024-06-17T15:51:36,564      17 | #warning "Using deprecated NumPy API, disable it with " \
2024-06-17T15:51:36,564         |  ^~~~~~~
2024-06-17T15:52:00,700   arm-linux-gnueabihf-g++ -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/src/xdrfile.o build/temp.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/src/xdrfile_xtc.o build/temp.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/src/xtc.o build/temp.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/xtc.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/moleculekit/xtc.cpython-311-arm-linux-gnueabihf.so
2024-06-17T15:52:01,038   building 'moleculekit.trr' extension
2024-06-17T15:52:01,039   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/fileformats/xtc -Imoleculekit/fileformats/xtc/include/ -Imoleculekit/fileformats/xtc/ -I/tmp/pip-build-env-f6ac6bbc/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c moleculekit/fileformats/xtc/src/xdr_seek.c -o build/temp.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/src/xdr_seek.o
2024-06-17T15:52:01,813   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/fileformats/xtc -Imoleculekit/fileformats/xtc/include/ -Imoleculekit/fileformats/xtc/ -I/tmp/pip-build-env-f6ac6bbc/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c moleculekit/fileformats/xtc/src/xdrfile.cpp -o build/temp.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/src/xdrfile.o
2024-06-17T15:52:02,493   moleculekit/fileformats/xtc/src/xdrfile.cpp:66:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-06-17T15:52:02,494      66 |         "OK",
2024-06-17T15:52:02,495         |         ^~~~
2024-06-17T15:52:02,495   moleculekit/fileformats/xtc/src/xdrfile.cpp:67:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-06-17T15:52:02,496      67 |         "Header",
2024-06-17T15:52:02,496         |         ^~~~~~~~
2024-06-17T15:52:02,497   moleculekit/fileformats/xtc/src/xdrfile.cpp:68:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-06-17T15:52:02,498      68 |         "String",
2024-06-17T15:52:02,498         |         ^~~~~~~~
2024-06-17T15:52:02,499   moleculekit/fileformats/xtc/src/xdrfile.cpp:69:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-06-17T15:52:02,500      69 |         "Double",
2024-06-17T15:52:02,500         |         ^~~~~~~~
2024-06-17T15:52:02,501   moleculekit/fileformats/xtc/src/xdrfile.cpp:70:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-06-17T15:52:02,501      70 |         "Integer",
2024-06-17T15:52:02,502         |         ^~~~~~~~~
2024-06-17T15:52:02,503   moleculekit/fileformats/xtc/src/xdrfile.cpp:71:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-06-17T15:52:02,503      71 |         "Float",
2024-06-17T15:52:02,504         |         ^~~~~~~
2024-06-17T15:52:02,505   moleculekit/fileformats/xtc/src/xdrfile.cpp:72:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-06-17T15:52:02,505      72 |         "Unsigned integer",
2024-06-17T15:52:02,506         |         ^~~~~~~~~~~~~~~~~~
2024-06-17T15:52:02,507   moleculekit/fileformats/xtc/src/xdrfile.cpp:73:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-06-17T15:52:02,508      73 |         "Compressed 3D coordinate",
2024-06-17T15:52:02,509         |         ^~~~~~~~~~~~~~~~~~~~~~~~~~
2024-06-17T15:52:02,509   moleculekit/fileformats/xtc/src/xdrfile.cpp:74:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-06-17T15:52:02,510      74 |         "Closing file",
2024-06-17T15:52:02,511         |         ^~~~~~~~~~~~~~
2024-06-17T15:52:02,512   moleculekit/fileformats/xtc/src/xdrfile.cpp:75:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-06-17T15:52:02,512      75 |         "Magic number",
2024-06-17T15:52:02,513         |         ^~~~~~~~~~~~~~
2024-06-17T15:52:02,514   moleculekit/fileformats/xtc/src/xdrfile.cpp:76:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-06-17T15:52:02,515      76 |         "Not enough memory",
2024-06-17T15:52:02,516         |         ^~~~~~~~~~~~~~~~~~~
2024-06-17T15:52:02,517   moleculekit/fileformats/xtc/src/xdrfile.cpp:77:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-06-17T15:52:02,518      77 |         "End of file",
2024-06-17T15:52:02,519         |         ^~~~~~~~~~~~~
2024-06-17T15:52:02,519   moleculekit/fileformats/xtc/src/xdrfile.cpp:78:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-06-17T15:52:02,520      78 |         "File not found"
2024-06-17T15:52:02,521         |         ^~~~~~~~~~~~~~~~
2024-06-17T15:52:02,522   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘int sizeofint(int)’:
2024-06-17T15:52:02,522   moleculekit/fileformats/xtc/src/xdrfile.cpp:459:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-06-17T15:52:02,523     459 |     while (size >= num && num_of_bits < 32)
2024-06-17T15:52:02,524         |            ~~~~~^~~~~~
2024-06-17T15:52:02,525   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘int sizeofints(int, unsigned int*)’:
2024-06-17T15:52:02,525   moleculekit/fileformats/xtc/src/xdrfile.cpp:505:32: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-06-17T15:52:02,526     505 |     while (bytes[num_of_bytes] >= num)
2024-06-17T15:52:02,526         |            ~~~~~~~~~~~~~~~~~~~~^~~~~~
2024-06-17T15:52:02,527   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘void encodeints(int*, int, int, unsigned int*, unsigned int*)’:
2024-06-17T15:52:02,527   moleculekit/fileformats/xtc/src/xdrfile.cpp:614:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-06-17T15:52:02,528     614 |     if (num_of_bits >= num_of_bytes * 8)
2024-06-17T15:52:02,528         |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
2024-06-17T15:52:02,529   moleculekit/fileformats/xtc/src/xdrfile.cpp:616:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-06-17T15:52:02,529     616 |                 for (i = 0; i < num_of_bytes; i++)
2024-06-17T15:52:02,530         |                             ~~^~~~~~~~~~~~~~
2024-06-17T15:52:02,530   moleculekit/fileformats/xtc/src/xdrfile.cpp:624:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-06-17T15:52:02,531     624 |                 for (i = 0; i < num_of_bytes-1; i++)
2024-06-17T15:52:02,532         |                             ~~^~~~~~~~~~~~~~~~
2024-06-17T15:52:02,532   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘int decodebits(int*, int)’:
2024-06-17T15:52:02,533   moleculekit/fileformats/xtc/src/xdrfile.cpp:664:30: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-06-17T15:52:02,534     664 |                 if (lastbits < num_of_bits)
2024-06-17T15:52:02,534         |                     ~~~~~~~~~^~~~~~~~~~~~~
2024-06-17T15:52:02,535   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘int xdrfile_decompress_coord_float(float*, int*, float*, XDRFILE*)’:
2024-06-17T15:52:02,536   moleculekit/fileformats/xtc/src/xdrfile.cpp:785:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-06-17T15:52:02,537     785 |         if(size3>xfp->buf1size)
2024-06-17T15:52:02,537         |            ~~~~~^~~~~~~~~~~~~~
2024-06-17T15:52:02,538   moleculekit/fileformats/xtc/src/xdrfile.cpp:842:26: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-06-17T15:52:02,539     842 |         maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2024-06-17T15:52:02,539         |                          ^
2024-06-17T15:52:02,540   moleculekit/fileformats/xtc/src/xdrfile.cpp:932:45: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-06-17T15:52:02,541     932 |                                 if(countmjh >= size3 ) { return -1; }
2024-06-17T15:52:02,541         |                                    ~~~~~~~~~^~~~~~~~
2024-06-17T15:52:02,542   moleculekit/fileformats/xtc/src/xdrfile.cpp:935:45: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-06-17T15:52:02,543     935 |                                 if(countmjh >= size3 ) { return -1; }
2024-06-17T15:52:02,544         |                                    ~~~~~~~~~^~~~~~~~
2024-06-17T15:52:02,544   moleculekit/fileformats/xtc/src/xdrfile.cpp:938:45: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-06-17T15:52:02,545     938 |                                 if(countmjh >= size3 ) { return -1; }
2024-06-17T15:52:02,546         |                                    ~~~~~~~~~^~~~~~~~
2024-06-17T15:52:02,547   moleculekit/fileformats/xtc/src/xdrfile.cpp:945:45: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-06-17T15:52:02,547     945 |                                 if(countmjh >= size3 ) { return -1; }
2024-06-17T15:52:02,548         |                                    ~~~~~~~~~^~~~~~~~
2024-06-17T15:52:02,548   moleculekit/fileformats/xtc/src/xdrfile.cpp:948:45: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-06-17T15:52:02,549     948 |                                 if(countmjh >= size3 ) { return -1; }
2024-06-17T15:52:02,550         |                                    ~~~~~~~~~^~~~~~~~
2024-06-17T15:52:02,550   moleculekit/fileformats/xtc/src/xdrfile.cpp:951:45: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-06-17T15:52:02,551     951 |                                 if(countmjh >= size3 ) { return -1; }
2024-06-17T15:52:02,551         |                                    ~~~~~~~~~^~~~~~~~
2024-06-17T15:52:02,552   moleculekit/fileformats/xtc/src/xdrfile.cpp:756:24: warning: variable ‘minidx’ set but not used [-Wunused-but-set-variable]
2024-06-17T15:52:02,552     756 |         int smallidx,  minidx, maxidx;
2024-06-17T15:52:02,553         |                        ^~~~~~
2024-06-17T15:52:02,554   moleculekit/fileformats/xtc/src/xdrfile.cpp:759:32: warning: variable ‘larger’ set but not used [-Wunused-but-set-variable]
2024-06-17T15:52:02,554     759 |         int smallnum, smaller, larger, i, is_smaller, run;
2024-06-17T15:52:02,555         |                                ^~~~~~
2024-06-17T15:52:02,556   moleculekit/fileformats/xtc/src/xdrfile.cpp:763:13: warning: unused variable ‘errval’ [-Wunused-variable]
2024-06-17T15:52:02,557     763 |         int errval=1;
2024-06-17T15:52:02,557         |             ^~~~~~
2024-06-17T15:52:02,558   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘int xdrfile_compress_coord_float(float*, int, float, XDRFILE*)’:
2024-06-17T15:52:02,559   moleculekit/fileformats/xtc/src/xdrfile.cpp:1011:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-06-17T15:52:02,559    1011 |         if(size3>xfp->buf1size)
2024-06-17T15:52:02,560         |            ~~~~~^~~~~~~~~~~~~~
2024-06-17T15:52:02,561   moleculekit/fileformats/xtc/src/xdrfile.cpp:1068:41: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-06-17T15:52:02,562    1068 |                 countmjh++; if( countmjh> size3) { return -1; }
2024-06-17T15:52:02,562         |                                 ~~~~~~~~^~~~~~~
2024-06-17T15:52:02,563   moleculekit/fileformats/xtc/src/xdrfile.cpp:1084:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-06-17T15:52:02,563    1084 |           countmjh++; if( countmjh> size3) { return -1; }
2024-06-17T15:52:02,564         |                           ~~~~~~~~^~~~~~~
2024-06-17T15:52:02,565   moleculekit/fileformats/xtc/src/xdrfile.cpp:1098:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-06-17T15:52:02,565    1098 |           countmjh++; if( countmjh> size3) { return -1; }
2024-06-17T15:52:02,566         |                           ~~~~~~~~^~~~~~~
2024-06-17T15:52:02,567   moleculekit/fileformats/xtc/src/xdrfile.cpp:1137:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-06-17T15:52:02,567    1137 |         while (smallidx < LASTIDX && magicints[smallidx] < mindiff)
2024-06-17T15:52:02,568         |                         ^
2024-06-17T15:52:02,569   moleculekit/fileformats/xtc/src/xdrfile.cpp:1143:26: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-06-17T15:52:02,569    1143 |         maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2024-06-17T15:52:02,570         |                          ^
2024-06-17T15:52:02,570   moleculekit/fileformats/xtc/src/xdrfile.cpp:1275:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-06-17T15:52:02,571    1275 |         if(tmp==(unsigned int)buf2[0])
2024-06-17T15:52:02,571         |            ~~~^~~~~~~~~~~~~~~~~~~~~~~
2024-06-17T15:52:02,572   moleculekit/fileformats/xtc/src/xdrfile.cpp:1001:13: warning: variable ‘errval’ set but not used [-Wunused-but-set-variable]
2024-06-17T15:52:02,573    1001 |         int errval;
2024-06-17T15:52:02,573         |             ^~~~~~
2024-06-17T15:52:02,574   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘int xdrfile_decompress_coord_double(double*, int*, double*, XDRFILE*)’:
2024-06-17T15:52:02,574   moleculekit/fileformats/xtc/src/xdrfile.cpp:1316:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-06-17T15:52:02,575    1316 |         if(size3>xfp->buf1size)
2024-06-17T15:52:02,575         |            ~~~~~^~~~~~~~~~~~~~
2024-06-17T15:52:02,576   moleculekit/fileformats/xtc/src/xdrfile.cpp:1377:26: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-06-17T15:52:02,577    1377 |         maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2024-06-17T15:52:02,577         |                          ^
2024-06-17T15:52:02,578   moleculekit/fileformats/xtc/src/xdrfile.cpp:1289:32: warning: variable ‘minidx’ set but not used [-Wunused-but-set-variable]
2024-06-17T15:52:02,579    1289 |         int smallidx,  maxidx, minidx;
2024-06-17T15:52:02,579         |                                ^~~~~~
2024-06-17T15:52:02,580   moleculekit/fileformats/xtc/src/xdrfile.cpp:1292:32: warning: variable ‘larger’ set but not used [-Wunused-but-set-variable]
2024-06-17T15:52:02,581    1292 |         int smallnum, smaller, larger, i, is_smaller, run;
2024-06-17T15:52:02,582         |                                ^~~~~~
2024-06-17T15:52:02,582   moleculekit/fileformats/xtc/src/xdrfile.cpp:1297:13: warning: unused variable ‘errval’ [-Wunused-variable]
2024-06-17T15:52:02,583    1297 |         int errval=1;
2024-06-17T15:52:02,584         |             ^~~~~~
2024-06-17T15:52:02,585   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘int xdrfile_compress_coord_double(double*, int, double, XDRFILE*)’:
2024-06-17T15:52:02,585   moleculekit/fileformats/xtc/src/xdrfile.cpp:1513:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-06-17T15:52:02,586    1513 |         if(size3>xfp->buf1size) {
2024-06-17T15:52:02,586         |            ~~~~~^~~~~~~~~~~~~~
2024-06-17T15:52:02,587   moleculekit/fileformats/xtc/src/xdrfile.cpp:1628:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-06-17T15:52:02,588    1628 |         while (smallidx < LASTIDX && magicints[smallidx] < mindiff) {
2024-06-17T15:52:02,589         |                         ^
2024-06-17T15:52:02,589   moleculekit/fileformats/xtc/src/xdrfile.cpp:1633:26: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-06-17T15:52:02,590    1633 |         maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2024-06-17T15:52:02,591         |                          ^
2024-06-17T15:52:02,591   moleculekit/fileformats/xtc/src/xdrfile.cpp:1743:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-06-17T15:52:02,592    1743 |         if(tmp==(unsigned int)buf2[0])
2024-06-17T15:52:02,593         |            ~~~^~~~~~~~~~~~~~~~~~~~~~~
2024-06-17T15:52:02,594   moleculekit/fileformats/xtc/src/xdrfile.cpp:1504:13: warning: variable ‘errval’ set but not used [-Wunused-but-set-variable]
2024-06-17T15:52:02,594    1504 |         int errval=1;
2024-06-17T15:52:02,595         |             ^~~~~~
2024-06-17T15:52:05,512   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/fileformats/xtc -Imoleculekit/fileformats/xtc/include/ -Imoleculekit/fileformats/xtc/ -I/tmp/pip-build-env-f6ac6bbc/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c moleculekit/fileformats/xtc/src/xdrfile_trr.c -o build/temp.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/src/xdrfile_trr.o
2024-06-17T15:52:05,615   moleculekit/fileformats/xtc/src/xdrfile_trr.c: In function ‘do_trnheader’:
2024-06-17T15:52:05,616   moleculekit/fileformats/xtc/src/xdrfile_trr.c:111:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare]
2024-06-17T15:52:05,617     111 |         if (slen != strlen(version)+1)
2024-06-17T15:52:05,617         |                  ^~
2024-06-17T15:52:05,618   moleculekit/fileformats/xtc/src/xdrfile_trr.c:121:46: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare]
2024-06-17T15:52:05,618     121 |         if (xdrfile_write_string(version,xd) != (strlen(version)+1) )
2024-06-17T15:52:05,619         |                                              ^~
2024-06-17T15:52:06,629   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/fileformats/xtc -Imoleculekit/fileformats/xtc/include/ -Imoleculekit/fileformats/xtc/ -I/tmp/pip-build-env-f6ac6bbc/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c moleculekit/fileformats/xtc/trr.c -o build/temp.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/trr.o
2024-06-17T15:52:07,036   In file included from /tmp/pip-build-env-f6ac6bbc/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2024-06-17T15:52:07,037                    from /tmp/pip-build-env-f6ac6bbc/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2024-06-17T15:52:07,037                    from /tmp/pip-build-env-f6ac6bbc/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h:5,
2024-06-17T15:52:07,038                    from moleculekit/fileformats/xtc/trr.c:1261:
2024-06-17T15:52:07,039   /tmp/pip-build-env-f6ac6bbc/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2024-06-17T15:52:07,040      17 | #warning "Using deprecated NumPy API, disable it with " \
2024-06-17T15:52:07,040         |  ^~~~~~~
2024-06-17T15:52:08,042   moleculekit/fileformats/xtc/trr.c: In function ‘__pyx_pf_11moleculekit_3trr_17TRRTrajectoryFile_22_calc_len_and_offsets’:
2024-06-17T15:52:08,056   moleculekit/fileformats/xtc/trr.c:16352:37: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘Py_ssize_t’ {aka ‘int’} [-Wsign-compare]
2024-06-17T15:52:08,057   16352 |       __pyx_t_6 = (__pyx_v_n_frames == __pyx_t_14);
2024-06-17T15:52:08,058         |                                     ^~
2024-06-17T15:52:31,542   moleculekit/fileformats/xtc/trr.c: In function ‘__pyx_pw_11moleculekit_3trr_17TRRTrajectoryFile_17_write’:
2024-06-17T15:52:31,543   moleculekit/fileformats/xtc/trr.c:1163:40: warning: ‘__pyx_v_status’ may be used uninitialized [-Wmaybe-uninitialized]
2024-06-17T15:52:31,544    1163 |   #define PyInt_FromLong               PyLong_FromLong
2024-06-17T15:52:31,544         |                                        ^~~~~~~~~~~~~~~
2024-06-17T15:52:31,557   moleculekit/fileformats/xtc/trr.c:14260:7: note: ‘__pyx_v_status’ was declared here
2024-06-17T15:52:31,559   14260 |   int __pyx_v_status;
2024-06-17T15:52:31,560         |       ^~~~~~~~~~~~~~
2024-06-17T15:52:43,249   moleculekit/fileformats/xtc/trr.c: In function ‘__pyx_pf_11moleculekit_3trr_17TRRTrajectoryFile_12_read’:
2024-06-17T15:52:43,260   moleculekit/fileformats/xtc/trr.c:11559:19: warning: ‘__pyx_pybuffernd_forces.diminfo[2].shape’ may be used uninitialized [-Wmaybe-uninitialized]
2024-06-17T15:52:43,261   11559 |         } else if (unlikely(__pyx_t_29 >= __pyx_pybuffernd_forces.diminfo[2].shape)) __pyx_t_4 = 2;
2024-06-17T15:52:43,261         |                   ^
2024-06-17T15:52:43,270   moleculekit/fileformats/xtc/trr.c:10091:21: note: ‘__pyx_pybuffernd_forces.diminfo[2].shape’ was declared here
2024-06-17T15:52:43,271   10091 |   __Pyx_LocalBuf_ND __pyx_pybuffernd_forces;
2024-06-17T15:52:43,271         |                     ^~~~~~~~~~~~~~~~~~~~~~~
2024-06-17T15:52:43,281   moleculekit/fileformats/xtc/trr.c:11555:19: warning: ‘__pyx_pybuffernd_forces.diminfo[1].shape’ may be used uninitialized [-Wmaybe-uninitialized]
2024-06-17T15:52:43,282   11555 |         } else if (unlikely(__pyx_t_30 >= __pyx_pybuffernd_forces.diminfo[1].shape)) __pyx_t_4 = 1;
2024-06-17T15:52:43,282         |                   ^
2024-06-17T15:52:43,291   moleculekit/fileformats/xtc/trr.c:10091:21: note: ‘__pyx_pybuffernd_forces.diminfo[1].shape’ was declared here
2024-06-17T15:52:43,292   10091 |   __Pyx_LocalBuf_ND __pyx_pybuffernd_forces;
2024-06-17T15:52:43,293         |                     ^~~~~~~~~~~~~~~~~~~~~~~
2024-06-17T15:52:43,293   moleculekit/fileformats/xtc/trr.c:2509:95: warning: ‘__pyx_pybuffernd_forces.diminfo[0].strides’ may be used uninitialized [-Wmaybe-uninitialized]
2024-06-17T15:52:43,294    2509 | #define __Pyx_BufPtrCContig3d(type, buf, i0, s0, i1, s1, i2, s2) ((type)((char*)buf + i0 * s0 + i1 * s1) + i2)
2024-06-17T15:52:43,295         |                                                                                               ^
2024-06-17T15:52:43,303   moleculekit/fileformats/xtc/trr.c:10091:21: note: ‘__pyx_pybuffernd_forces.diminfo[0].strides’ was declared here
2024-06-17T15:52:43,304   10091 |   __Pyx_LocalBuf_ND __pyx_pybuffernd_forces;
2024-06-17T15:52:43,304         |                     ^~~~~~~~~~~~~~~~~~~~~~~
2024-06-17T15:52:43,314   moleculekit/fileformats/xtc/trr.c:11549:59: warning: ‘__pyx_pybuffernd_forces.diminfo[0].shape’ may be used uninitialized [-Wmaybe-uninitialized]
2024-06-17T15:52:43,315   11549 |           __pyx_t_28 += __pyx_pybuffernd_forces.diminfo[0].shape;
2024-06-17T15:52:43,315         |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~
2024-06-17T15:52:43,324   moleculekit/fileformats/xtc/trr.c:10091:21: note: ‘__pyx_pybuffernd_forces.diminfo[0].shape’ was declared here
2024-06-17T15:52:43,325   10091 |   __Pyx_LocalBuf_ND __pyx_pybuffernd_forces;
2024-06-17T15:52:43,325         |                     ^~~~~~~~~~~~~~~~~~~~~~~
2024-06-17T15:52:43,335   moleculekit/fileformats/xtc/trr.c:11502:19: warning: ‘__pyx_pybuffernd_vel.diminfo[2].shape’ may be used uninitialized [-Wmaybe-uninitialized]
2024-06-17T15:52:43,336   11502 |         } else if (unlikely(__pyx_t_30 >= __pyx_pybuffernd_vel.diminfo[2].shape)) __pyx_t_4 = 2;
2024-06-17T15:52:43,336         |                   ^
2024-06-17T15:52:43,345   moleculekit/fileformats/xtc/trr.c:10107:21: note: ‘__pyx_pybuffernd_vel.diminfo[2].shape’ was declared here
2024-06-17T15:52:43,346   10107 |   __Pyx_LocalBuf_ND __pyx_pybuffernd_vel;
2024-06-17T15:52:43,346         |                     ^~~~~~~~~~~~~~~~~~~~
2024-06-17T15:52:43,356   moleculekit/fileformats/xtc/trr.c:11498:19: warning: ‘__pyx_pybuffernd_vel.diminfo[1].shape’ may be used uninitialized [-Wmaybe-uninitialized]
2024-06-17T15:52:43,357   11498 |         } else if (unlikely(__pyx_t_29 >= __pyx_pybuffernd_vel.diminfo[1].shape)) __pyx_t_4 = 1;
2024-06-17T15:52:43,357         |                   ^
2024-06-17T15:52:43,366   moleculekit/fileformats/xtc/trr.c:10107:21: note: ‘__pyx_pybuffernd_vel.diminfo[1].shape’ was declared here
2024-06-17T15:52:43,367   10107 |   __Pyx_LocalBuf_ND __pyx_pybuffernd_vel;
2024-06-17T15:52:43,367         |                     ^~~~~~~~~~~~~~~~~~~~
2024-06-17T15:52:43,368   moleculekit/fileformats/xtc/trr.c:2509:95: warning: ‘__pyx_pybuffernd_vel.diminfo[0].strides’ may be used uninitialized [-Wmaybe-uninitialized]
2024-06-17T15:52:43,369    2509 | #define __Pyx_BufPtrCContig3d(type, buf, i0, s0, i1, s1, i2, s2) ((type)((char*)buf + i0 * s0 + i1 * s1) + i2)
2024-06-17T15:52:43,369         |                                                                                               ^
2024-06-17T15:52:43,378   moleculekit/fileformats/xtc/trr.c:10107:21: note: ‘__pyx_pybuffernd_vel.diminfo[0].strides’ was declared here
2024-06-17T15:52:43,379   10107 |   __Pyx_LocalBuf_ND __pyx_pybuffernd_vel;
2024-06-17T15:52:43,379         |                     ^~~~~~~~~~~~~~~~~~~~
2024-06-17T15:52:43,389   moleculekit/fileformats/xtc/trr.c:11492:56: warning: ‘__pyx_pybuffernd_vel.diminfo[0].shape’ may be used uninitialized [-Wmaybe-uninitialized]
2024-06-17T15:52:43,389   11492 |           __pyx_t_28 += __pyx_pybuffernd_vel.diminfo[0].shape;
2024-06-17T15:52:43,390         |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~
2024-06-17T15:52:43,399   moleculekit/fileformats/xtc/trr.c:10107:21: note: ‘__pyx_pybuffernd_vel.diminfo[0].shape’ was declared here
2024-06-17T15:52:43,400   10107 |   __Pyx_LocalBuf_ND __pyx_pybuffernd_vel;
2024-06-17T15:52:43,400         |                     ^~~~~~~~~~~~~~~~~~~~
2024-06-17T15:52:43,410   moleculekit/fileformats/xtc/trr.c:11891:17: warning: ‘__pyx_pybuffernd_xyz_buffer.diminfo[1].shape’ may be used uninitialized [-Wmaybe-uninitialized]
2024-06-17T15:52:43,411   11891 |       } else if (unlikely(__pyx_t_29 >= __pyx_pybuffernd_xyz_buffer.diminfo[1].shape)) __pyx_t_4 = 1;
2024-06-17T15:52:43,411         |                 ^
2024-06-17T15:52:43,420   moleculekit/fileformats/xtc/trr.c:10113:21: note: ‘__pyx_pybuffernd_xyz_buffer.diminfo[1].shape’ was declared here
2024-06-17T15:52:43,421   10113 |   __Pyx_LocalBuf_ND __pyx_pybuffernd_xyz_buffer;
2024-06-17T15:52:43,421         |                     ^~~~~~~~~~~~~~~~~~~~~~~~~~~
2024-06-17T15:52:43,431   moleculekit/fileformats/xtc/trr.c:11887:17: warning: ‘__pyx_pybuffernd_xyz_buffer.diminfo[0].shape’ may be used uninitialized [-Wmaybe-uninitialized]
2024-06-17T15:52:43,432   11887 |       } else if (unlikely(__pyx_t_30 >= __pyx_pybuffernd_xyz_buffer.diminfo[0].shape)) __pyx_t_4 = 0;
2024-06-17T15:52:43,433         |                 ^
2024-06-17T15:52:43,441   moleculekit/fileformats/xtc/trr.c:10113:21: note: ‘__pyx_pybuffernd_xyz_buffer.diminfo[0].shape’ was declared here
2024-06-17T15:52:43,442   10113 |   __Pyx_LocalBuf_ND __pyx_pybuffernd_xyz_buffer;
2024-06-17T15:52:43,443         |                     ^~~~~~~~~~~~~~~~~~~~~~~~~~~
2024-06-17T15:52:43,452   moleculekit/fileformats/xtc/trr.c:11732:19: warning: ‘__pyx_pybuffernd_vel_buffer.diminfo[1].shape’ may be used uninitialized [-Wmaybe-uninitialized]
2024-06-17T15:52:43,453   11732 |         } else if (unlikely(__pyx_t_35 >= __pyx_pybuffernd_vel_buffer.diminfo[1].shape)) __pyx_t_4 = 1;
2024-06-17T15:52:43,454         |                   ^
2024-06-17T15:52:43,462   moleculekit/fileformats/xtc/trr.c:10109:21: note: ‘__pyx_pybuffernd_vel_buffer.diminfo[1].shape’ was declared here
2024-06-17T15:52:43,463   10109 |   __Pyx_LocalBuf_ND __pyx_pybuffernd_vel_buffer;
2024-06-17T15:52:43,464         |                     ^~~~~~~~~~~~~~~~~~~~~~~~~~~
2024-06-17T15:52:43,474   moleculekit/fileformats/xtc/trr.c:11728:19: warning: ‘__pyx_pybuffernd_vel_buffer.diminfo[0].shape’ may be used uninitialized [-Wmaybe-uninitialized]
2024-06-17T15:52:43,474   11728 |         } else if (unlikely(__pyx_t_36 >= __pyx_pybuffernd_vel_buffer.diminfo[0].shape)) __pyx_t_4 = 0;
2024-06-17T15:52:43,475         |                   ^
2024-06-17T15:52:43,484   moleculekit/fileformats/xtc/trr.c:10109:21: note: ‘__pyx_pybuffernd_vel_buffer.diminfo[0].shape’ was declared here
2024-06-17T15:52:43,484   10109 |   __Pyx_LocalBuf_ND __pyx_pybuffernd_vel_buffer;
2024-06-17T15:52:43,485         |                     ^~~~~~~~~~~~~~~~~~~~~~~~~~~
2024-06-17T15:52:43,495   moleculekit/fileformats/xtc/trr.c:11784:19: warning: ‘__pyx_pybuffernd_forces_buffer.diminfo[1].shape’ may be used uninitialized [-Wmaybe-uninitialized]
2024-06-17T15:52:43,495   11784 |         } else if (unlikely(__pyx_t_36 >= __pyx_pybuffernd_forces_buffer.diminfo[1].shape)) __pyx_t_4 = 1;
2024-06-17T15:52:43,496         |                   ^
2024-06-17T15:52:43,505   moleculekit/fileformats/xtc/trr.c:10093:21: note: ‘__pyx_pybuffernd_forces_buffer.diminfo[1].shape’ was declared here
2024-06-17T15:52:43,505   10093 |   __Pyx_LocalBuf_ND __pyx_pybuffernd_forces_buffer;
2024-06-17T15:52:43,506         |                     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2024-06-17T15:52:43,516   moleculekit/fileformats/xtc/trr.c:11780:19: warning: ‘__pyx_pybuffernd_forces_buffer.diminfo[0].shape’ may be used uninitialized [-Wmaybe-uninitialized]
2024-06-17T15:52:43,516   11780 |         } else if (unlikely(__pyx_t_35 >= __pyx_pybuffernd_forces_buffer.diminfo[0].shape)) __pyx_t_4 = 0;
2024-06-17T15:52:43,517         |                   ^
2024-06-17T15:52:43,526   moleculekit/fileformats/xtc/trr.c:10093:21: note: ‘__pyx_pybuffernd_forces_buffer.diminfo[0].shape’ was declared here
2024-06-17T15:52:43,527   10093 |   __Pyx_LocalBuf_ND __pyx_pybuffernd_forces_buffer;
2024-06-17T15:52:43,527         |                     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2024-06-17T15:52:50,201   arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/src/xdr_seek.o build/temp.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/src/xdrfile.o build/temp.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/src/xdrfile_trr.o build/temp.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/trr.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/moleculekit/trr.cpython-311-arm-linux-gnueabihf.so
2024-06-17T15:52:50,417   building 'moleculekit.dcd' extension
2024-06-17T15:52:50,418   creating build/temp.linux-armv7l-cpython-311/moleculekit/fileformats/dcd
2024-06-17T15:52:50,419   creating build/temp.linux-armv7l-cpython-311/moleculekit/fileformats/dcd/src
2024-06-17T15:52:50,420   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/fileformats/dcd -Imoleculekit/fileformats/dcd/include/ -Imoleculekit/fileformats/dcd/ -I/tmp/pip-build-env-f6ac6bbc/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c moleculekit/fileformats/dcd/dcd.c -o build/temp.linux-armv7l-cpython-311/moleculekit/fileformats/dcd/dcd.o
2024-06-17T15:52:50,857   In file included from /tmp/pip-build-env-f6ac6bbc/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2024-06-17T15:52:50,858                    from /tmp/pip-build-env-f6ac6bbc/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2024-06-17T15:52:50,858                    from /tmp/pip-build-env-f6ac6bbc/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h:5,
2024-06-17T15:52:50,859                    from moleculekit/fileformats/dcd/dcd.c:1256:
2024-06-17T15:52:50,859   /tmp/pip-build-env-f6ac6bbc/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2024-06-17T15:52:50,860      17 | #warning "Using deprecated NumPy API, disable it with " \
2024-06-17T15:52:50,861         |  ^~~~~~~
2024-06-17T15:52:52,151   In file included from moleculekit/fileformats/dcd/include/dcdplugin.h:1,
2024-06-17T15:52:52,152                    from moleculekit/fileformats/dcd/dcd.c:1262:
2024-06-17T15:52:52,152   moleculekit/fileformats/dcd/include/fastio.h:474:12: warning: ‘fio_write_str’ defined but not used [-Wunused-function]
2024-06-17T15:52:52,153     474 | static int fio_write_str(fio_fd fd, const char *str) {
2024-06-17T15:52:52,154         |            ^~~~~~~~~~~~~
2024-06-17T15:52:52,154   moleculekit/fileformats/dcd/include/fastio.h:470:12: warning: ‘fio_read_int32’ defined but not used [-Wunused-function]
2024-06-17T15:52:52,155     470 | static int fio_read_int32(fio_fd fd, int *i) {
2024-06-17T15:52:52,155         |            ^~~~~~~~~~~~~~
2024-06-17T15:52:52,156   moleculekit/fileformats/dcd/include/fastio.h:466:12: warning: ‘fio_write_int32’ defined but not used [-Wunused-function]
2024-06-17T15:52:52,157     466 | static int fio_write_int32(fio_fd fd, int i) {
2024-06-17T15:52:52,157         |            ^~~~~~~~~~~~~~~
2024-06-17T15:52:52,158   moleculekit/fileformats/dcd/include/fastio.h:457:19: warning: ‘fio_ftell’ defined but not used [-Wunused-function]
2024-06-17T15:52:52,158     457 | static fio_size_t fio_ftell(fio_fd fd) {
2024-06-17T15:52:52,159         |                   ^~~~~~~~~
2024-06-17T15:52:52,159   moleculekit/fileformats/dcd/include/fastio.h:450:19: warning: ‘fio_fseek’ defined but not used [-Wunused-function]
2024-06-17T15:52:52,160     450 | static fio_size_t fio_fseek(fio_fd fd, fio_size_t offset, int whence) {
2024-06-17T15:52:52,161         |                   ^~~~~~~~~
2024-06-17T15:52:52,161   moleculekit/fileformats/dcd/include/fastio.h:415:19: warning: ‘fio_readv’ defined but not used [-Wunused-function]
2024-06-17T15:52:52,162     415 | static fio_size_t fio_readv(fio_fd fd, const fio_iovec * iov, int iovcnt) {
2024-06-17T15:52:52,163         |                   ^~~~~~~~~
2024-06-17T15:52:52,164   moleculekit/fileformats/dcd/include/fastio.h:394:12: warning: ‘fio_fclose’ defined but not used [-Wunused-function]
2024-06-17T15:52:52,165     394 | static int fio_fclose(fio_fd fd) {
2024-06-17T15:52:52,166         |            ^~~~~~~~~~
2024-06-17T15:52:52,166   moleculekit/fileformats/dcd/include/fastio.h:366:12: warning: ‘fio_open’ defined but not used [-Wunused-function]
2024-06-17T15:52:52,167     366 | static int fio_open(const char *filename, int mode, fio_fd *fd) {
2024-06-17T15:52:52,168         |            ^~~~~~~~
2024-06-17T15:53:06,622   moleculekit/fileformats/dcd/dcd.c: In function ‘__pyx_pf_11moleculekit_3dcd_17DCDTrajectoryFile_18read’:
2024-06-17T15:53:06,622   moleculekit/fileformats/dcd/dcd.c:1158:40: warning: ‘__pyx_v_i’ may be used uninitialized [-Wmaybe-uninitialized]
2024-06-17T15:53:06,624    1158 |   #define PyInt_FromLong               PyLong_FromLong
2024-06-17T15:53:06,625         |                                        ^~~~~~~~~~~~~~~
2024-06-17T15:53:06,630   moleculekit/fileformats/dcd/dcd.c:8022:7: note: ‘__pyx_v_i’ was declared here
2024-06-17T15:53:06,631    8022 |   int __pyx_v_i;
2024-06-17T15:53:06,632         |       ^~~~~~~~~
2024-06-17T15:53:10,017   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/fileformats/dcd -Imoleculekit/fileformats/dcd/include/ -Imoleculekit/fileformats/dcd/ -I/tmp/pip-build-env-f6ac6bbc/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c moleculekit/fileformats/dcd/src/dcdplugin.c -o build/temp.linux-armv7l-cpython-311/moleculekit/fileformats/dcd/src/dcdplugin.o
2024-06-17T15:53:10,693   moleculekit/fileformats/dcd/src/dcdplugin.c: In function ‘read_dcdheader’:
2024-06-17T15:53:10,694   moleculekit/fileformats/dcd/src/dcdplugin.c:150:55: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-06-17T15:53:10,695     150 |   else if (input_integer[0] == 84 && input_integer[1] == dcdcordmagic)
2024-06-17T15:53:10,696         |                                                       ^~
2024-06-17T15:53:10,697   moleculekit/fileformats/dcd/src/dcdplugin.c:173:54: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-06-17T15:53:10,698     173 |       if (input_integer[0] == 84 && input_integer[1] == dcdcordmagic)
2024-06-17T15:53:10,699         |                                                      ^~
2024-06-17T15:53:10,700   moleculekit/fileformats/dcd/src/dcdplugin.c:194:26: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-06-17T15:53:10,701     194 |     if (input_integer[0] != dcdcordmagic)
2024-06-17T15:53:10,702         |                          ^~
2024-06-17T15:53:10,703   moleculekit/fileformats/dcd/src/dcdplugin.c:409:47: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-06-17T15:53:10,704     409 |     if ((input_integer[0] + input_integer[1]) != ((*N) - (*NAMNF)) * 4)
2024-06-17T15:53:10,705         |                                               ^~
2024-06-17T15:53:10,706   moleculekit/fileformats/dcd/src/dcdplugin.c:428:47: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-06-17T15:53:10,706     428 |     if ((input_integer[0] + input_integer[1]) != ((*N) - (*NAMNF)) * 4)
2024-06-17T15:53:10,707         |                                               ^~
2024-06-17T15:53:10,707   moleculekit/fileformats/dcd/src/dcdplugin.c: In function ‘read_dcdstep’:
2024-06-17T15:53:10,708   moleculekit/fileformats/dcd/src/dcdplugin.c:651:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-06-17T15:53:10,709     651 |         if (tmpbuf[i] != sizeof(float) * N)
2024-06-17T15:53:10,710         |                       ^~
2024-06-17T15:53:10,710   moleculekit/fileformats/dcd/src/dcdplugin.c:659:49: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-06-17T15:53:10,711     659 |         if ((tmpbuf[2 * i] + tmpbuf[2 * i + 1]) != sizeof(float) * N)
2024-06-17T15:53:10,712         |                                                 ^~
2024-06-17T15:53:10,736   In file included from moleculekit/fileformats/dcd/src/dcdplugin.c:55:
2024-06-17T15:53:10,737   moleculekit/fileformats/dcd/include/endianswap.h: At top level:
2024-06-17T15:53:10,738   moleculekit/fileformats/dcd/include/endianswap.h:96:13: warning: ‘swap2_aligned’ defined but not used [-Wunused-function]
2024-06-17T15:53:10,739      96 | static void swap2_aligned(void *v, long ndata) {
2024-06-17T15:53:10,739         |             ^~~~~~~~~~~~~
2024-06-17T15:53:10,740   moleculekit/fileformats/dcd/include/endianswap.h:32:13: warning: ‘swap2_unaligned’ defined but not used [-Wunused-function]
2024-06-17T15:53:10,741      32 | static void swap2_unaligned(void *v, long ndata) {
2024-06-17T15:53:10,741         |             ^~~~~~~~~~~~~~~
2024-06-17T15:53:10,742   In file included from moleculekit/fileformats/dcd/src/dcdplugin.c:46:
2024-06-17T15:53:10,743   moleculekit/fileformats/dcd/include/fastio.h:474:12: warning: ‘fio_write_str’ defined but not used [-Wunused-function]
2024-06-17T15:53:10,743     474 | static int fio_write_str(fio_fd fd, const char *str) {
2024-06-17T15:53:10,744         |            ^~~~~~~~~~~~~
2024-06-17T15:53:10,745   moleculekit/fileformats/dcd/include/fastio.h:470:12: warning: ‘fio_read_int32’ defined but not used [-Wunused-function]
2024-06-17T15:53:10,746     470 | static int fio_read_int32(fio_fd fd, int *i) {
2024-06-17T15:53:10,747         |            ^~~~~~~~~~~~~~
2024-06-17T15:53:12,542   arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/moleculekit/fileformats/dcd/dcd.o build/temp.linux-armv7l-cpython-311/moleculekit/fileformats/dcd/src/dcdplugin.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/moleculekit/dcd.cpython-311-arm-linux-gnueabihf.so
2024-06-17T15:53:13,141   building 'moleculekit.binpos' extension
2024-06-17T15:53:13,143   creating build/temp.linux-armv7l-cpython-311/moleculekit/fileformats/binpos
2024-06-17T15:53:13,146   creating build/temp.linux-armv7l-cpython-311/moleculekit/fileformats/binpos/src
2024-06-17T15:53:13,147   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/fileformats/binpos -Imoleculekit/fileformats/binpos/include/ -Imoleculekit/fileformats/binpos/ -I/tmp/pip-build-env-f6ac6bbc/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c moleculekit/fileformats/binpos/binpos.c -o build/temp.linux-armv7l-cpython-311/moleculekit/fileformats/binpos/binpos.o
2024-06-17T15:53:14,736   In file included from /tmp/pip-build-env-f6ac6bbc/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2024-06-17T15:53:14,737                    from /tmp/pip-build-env-f6ac6bbc/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2024-06-17T15:53:14,738                    from /tmp/pip-build-env-f6ac6bbc/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h:5,
2024-06-17T15:53:14,739                    from moleculekit/fileformats/binpos/binpos.c:1256:
2024-06-17T15:53:14,739   /tmp/pip-build-env-f6ac6bbc/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2024-06-17T15:53:14,740      17 | #warning "Using deprecated NumPy API, disable it with " \
2024-06-17T15:53:14,741         |  ^~~~~~~
2024-06-17T15:53:29,753   In function ‘__pyx_pf_11moleculekit_6binpos_20BINPOSTrajectoryFile_6_read’,
2024-06-17T15:53:29,753       inlined from ‘__pyx_pw_11moleculekit_6binpos_20BINPOSTrajectoryFile_7_read’ at moleculekit/fileformats/binpos/binpos.c:7504:13:
2024-06-17T15:53:29,760   moleculekit/fileformats/binpos/binpos.c:8045:6: warning: ‘__pyx_v_status’ may be used uninitialized [-Wmaybe-uninitialized]
2024-06-17T15:53:29,761    8045 |   if (__pyx_t_1) {
2024-06-17T15:53:29,762         |      ^
2024-06-17T15:53:29,762   moleculekit/fileformats/binpos/binpos.c: In function ‘__pyx_pw_11moleculekit_6binpos_20BINPOSTrajectoryFile_7_read’:
2024-06-17T15:53:29,767   moleculekit/fileformats/binpos/binpos.c:7522:7: note: ‘__pyx_v_status’ was declared here
2024-06-17T15:53:29,769    7522 |   int __pyx_v_status;
2024-06-17T15:53:29,770         |       ^~~~~~~~~~~~~~
2024-06-17T15:53:29,771   moleculekit/fileformats/binpos/binpos.c:1158:40: warning: ‘__pyx_v_i’ may be used uninitialized [-Wmaybe-uninitialized]
2024-06-17T15:53:29,772    1158 |   #define PyInt_FromLong               PyLong_FromLong
2024-06-17T15:53:29,773         |                                        ^~~~~~~~~~~~~~~
2024-06-17T15:53:29,776   moleculekit/fileformats/binpos/binpos.c:7519:7: note: ‘__pyx_v_i’ was declared here
2024-06-17T15:53:29,777    7519 |   int __pyx_v_i;
2024-06-17T15:53:29,778         |       ^~~~~~~~~
2024-06-17T15:53:33,382   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/fileformats/binpos -Imoleculekit/fileformats/binpos/include/ -Imoleculekit/fileformats/binpos/ -I/tmp/pip-build-env-f6ac6bbc/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c moleculekit/fileformats/binpos/src/binposplugin.c -o build/temp.linux-armv7l-cpython-311/moleculekit/fileformats/binpos/src/binposplugin.o
2024-06-17T15:53:33,974   arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/moleculekit/fileformats/binpos/binpos.o build/temp.linux-armv7l-cpython-311/moleculekit/fileformats/binpos/src/binposplugin.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/moleculekit/binpos.cpython-311-arm-linux-gnueabihf.so
2024-06-17T15:53:34,117   building 'moleculekit.tmalign' extension
2024-06-17T15:53:34,117   creating build/temp.linux-armv7l-cpython-311/moleculekit/tmalign
2024-06-17T15:53:34,118   creating build/temp.linux-armv7l-cpython-311/moleculekit/tmalign/src
2024-06-17T15:53:34,119   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/tmalign -Imoleculekit/tmalign/include/ -Imoleculekit/tmalign/ -I/tmp/pip-build-env-f6ac6bbc/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c moleculekit/tmalign/src/TMAlign.cpp -o build/temp.linux-armv7l-cpython-311/moleculekit/tmalign/src/TMAlign.o -w
2024-06-17T15:54:09,813   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/tmalign -Imoleculekit/tmalign/include/ -Imoleculekit/tmalign/ -I/tmp/pip-build-env-f6ac6bbc/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c moleculekit/tmalign/tmalign_util.cpp -o build/temp.linux-armv7l-cpython-311/moleculekit/tmalign/tmalign_util.o -w
2024-06-17T15:54:32,360   In file included from /usr/include/c++/12/vector:70,
2024-06-17T15:54:32,361                    from moleculekit/tmalign/tmalign_util.cpp:1280:
2024-06-17T15:54:32,361   /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator<double>]’:
2024-06-17T15:54:32,362   /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector<double>::iterator’ changed in GCC 7.1
2024-06-17T15:54:32,363     439 |       vector<_Tp, _Alloc>::
2024-06-17T15:54:32,364         |       ^~~~~~~~~~~~~~~~~~~
2024-06-17T15:54:33,165   In file included from /usr/include/c++/12/vector:64:
2024-06-17T15:54:33,166   In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]’,
2024-06-17T15:54:33,167       inlined from ‘PyObject* __pyx_pf_11moleculekit_7tmalign_tmalign(PyObject*, __Pyx_memviewslice, __Pyx_memviewslice, std::string, std::string)’ at moleculekit/tmalign/tmalign_util.cpp:20779:32,
2024-06-17T15:54:33,167       inlined from ‘PyObject* __pyx_pw_11moleculekit_7tmalign_1tmalign(PyObject*, PyObject* const*, Py_ssize_t, PyObject*)’ at moleculekit/tmalign/tmalign_util.cpp:20264:52:
2024-06-17T15:54:33,168   /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
2024-06-17T15:54:33,169    1287 |           _M_realloc_insert(end(), __x);
2024-06-17T15:54:33,169         |           ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2024-06-17T15:54:33,170   In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]’,
2024-06-17T15:54:33,171       inlined from ‘PyObject* __pyx_pf_11moleculekit_7tmalign_tmalign(PyObject*, __Pyx_memviewslice, __Pyx_memviewslice, std::string, std::string)’ at moleculekit/tmalign/tmalign_util.cpp:20793:33,
2024-06-17T15:54:33,171       inlined from ‘PyObject* __pyx_pw_11moleculekit_7tmalign_1tmalign(PyObject*, PyObject* const*, Py_ssize_t, PyObject*)’ at moleculekit/tmalign/tmalign_util.cpp:20264:52:
2024-06-17T15:54:33,172   /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
2024-06-17T15:54:33,173    1287 |           _M_realloc_insert(end(), __x);
2024-06-17T15:54:33,173         |           ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2024-06-17T15:54:33,174   In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]’,
2024-06-17T15:54:33,174       inlined from ‘PyObject* __pyx_pf_11moleculekit_7tmalign_tmalign(PyObject*, __Pyx_memviewslice, __Pyx_memviewslice, std::string, std::string)’ at moleculekit/tmalign/tmalign_util.cpp:20878:34,
2024-06-17T15:54:33,175       inlined from ‘PyObject* __pyx_pw_11moleculekit_7tmalign_1tmalign(PyObject*, PyObject* const*, Py_ssize_t, PyObject*)’ at moleculekit/tmalign/tmalign_util.cpp:20264:52:
2024-06-17T15:54:33,176   /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
2024-06-17T15:54:33,176    1287 |           _M_realloc_insert(end(), __x);
2024-06-17T15:54:33,177         |           ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2024-06-17T15:54:35,799   arm-linux-gnueabihf-g++ -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/moleculekit/tmalign/src/TMAlign.o build/temp.linux-armv7l-cpython-311/moleculekit/tmalign/tmalign_util.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/moleculekit/tmalign.cpython-311-arm-linux-gnueabihf.so
2024-06-17T15:54:36,714   UPDATING build/lib.linux-armv7l-cpython-311/moleculekit/_version.py
2024-06-17T15:54:36,715   set build/lib.linux-armv7l-cpython-311/moleculekit/_version.py to '1.8.34'
2024-06-17T15:54:36,717   installing to build/bdist.linux-armv7l/wheel
2024-06-17T15:54:36,718   running install
2024-06-17T15:54:36,739   running install_lib
2024-06-17T15:54:36,749   creating build/bdist.linux-armv7l
2024-06-17T15:54:36,750   creating build/bdist.linux-armv7l/wheel
2024-06-17T15:54:36,759   creating build/bdist.linux-armv7l/wheel/moleculekit
2024-06-17T15:54:36,973   copying build/lib.linux-armv7l-cpython-311/moleculekit/pymolgraphics.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-06-17T15:54:36,977   copying build/lib.linux-armv7l-cpython-311/moleculekit/periodictable.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-06-17T15:54:36,981   copying build/lib.linux-armv7l-cpython-311/moleculekit/bondguesser_utils.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2024-06-17T15:54:37,042   copying build/lib.linux-armv7l-cpython-311/moleculekit/atomselect_utils.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2024-06-17T15:54:37,122   copying build/lib.linux-armv7l-cpython-311/moleculekit/tmalign.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2024-06-17T15:54:37,229   copying build/lib.linux-armv7l-cpython-311/moleculekit/dcd.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2024-06-17T15:54:37,252   copying build/lib.linux-armv7l-cpython-311/moleculekit/rdkitintegration.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-06-17T15:54:37,255   copying build/lib.linux-armv7l-cpython-311/moleculekit/logging.ini -> build/bdist.linux-armv7l/wheel/moleculekit
2024-06-17T15:54:37,258   copying build/lib.linux-armv7l-cpython-311/moleculekit/_version.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-06-17T15:54:37,260   copying build/lib.linux-armv7l-cpython-311/moleculekit/molecule.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-06-17T15:54:37,267   copying build/lib.linux-armv7l-cpython-311/moleculekit/vmdgraphics.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-06-17T15:54:37,271   creating build/bdist.linux-armv7l/wheel/moleculekit/share
2024-06-17T15:54:37,272   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/opm_sequences.json -> build/bdist.linux-armv7l/wheel/moleculekit/share
2024-06-17T15:54:37,696   creating build/bdist.linux-armv7l/wheel/moleculekit/share/atomselect
2024-06-17T15:54:37,697   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/atomselect/atomselect.json -> build/bdist.linux-armv7l/wheel/moleculekit/share/atomselect
2024-06-17T15:54:37,700   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/backbone.cif -> build/bdist.linux-armv7l/wheel/moleculekit/share
2024-06-17T15:54:38,165   creating build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr
2024-06-17T15:54:38,175   creating build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-17T15:54:38,177   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/2MR.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-17T15:54:38,180   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/MMO.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-17T15:54:38,184   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/0BN.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-17T15:54:38,187   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/ME0.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-17T15:54:38,189   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/TPO.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-17T15:54:38,193   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/HOX.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-17T15:54:38,196   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/BTK.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-17T15:54:38,200   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/ESC.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-17T15:54:38,203   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/M3L.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-17T15:54:38,207   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/03Y.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-17T15:54:38,211   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/NCY.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-17T15:54:38,214   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/GNC.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-17T15:54:38,217   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/MVA.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-17T15:54:38,221   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/BB8.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-17T15:54:38,224   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/NCY.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-17T15:54:38,227   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/.gitkeep -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-17T15:54:38,230   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/I2M.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-17T15:54:38,233   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/IML.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-17T15:54:38,237   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/GHG.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-17T15:54:38,241   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/NVA.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-17T15:54:38,244   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/PCA.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-17T15:54:38,247   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/FGL.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-17T15:54:38,250   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/TY2.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-17T15:54:38,252   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/LYZ.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-17T15:54:38,255   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/TRO.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-17T15:54:38,258   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/004.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-17T15:54:38,261   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/GME.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-17T15:54:38,264   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/NAL.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-17T15:54:38,267   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/0AF.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-17T15:54:38,270   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/KYN.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-17T15:54:38,273   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/CSP.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-17T15:54:38,276   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/4PQ.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-17T15:54:38,279   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/BCS.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-17T15:54:38,282   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/CGU.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-17T15:54:38,285   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/ALC.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-17T15:54:38,288   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/CSA.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-17T15:54:38,292   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/DA2.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-17T15:54:38,295   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/2GX.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-17T15:54:38,298   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/NZC.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-17T15:54:38,300   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/ALY.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-17T15:54:38,302   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/OCY.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-17T15:54:38,304   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/MLY.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-17T15:54:38,307   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/I2M.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-17T15:54:38,309   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/FGL.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-17T15:54:38,312   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/HPE.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-17T15:54:38,533   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/LYZ.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-17T15:54:38,535   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/PCA.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-17T15:54:38,537   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/0A1.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-17T15:54:38,539   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/AHP.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-17T15:54:38,541   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/GHG.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-17T15:54:38,543   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/HQA.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-17T15:54:38,545   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/D4P.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-17T15:54:38,548   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/APD.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-17T15:54:38,550   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/MEN.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-17T15:54:38,553   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/0AF.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-17T15:54:38,556   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/MME.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-17T15:54:38,559   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/DAB.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-17T15:54:38,563   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/BB8.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-17T15:54:38,567   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/HHK.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-17T15:54:38,573   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/DPP.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-17T15:54:38,577   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/HHK.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-17T15:54:38,582   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/ABA.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-17T15:54:38,803   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/03Y.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-17T15:54:38,809   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/ALC.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-17T15:54:38,813   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/APD.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-17T15:54:38,817   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/LME.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-17T15:54:38,823   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/IGL.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-17T15:54:39,266   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/YCM.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-17T15:54:39,271   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/GME.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-17T15:54:39,306   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/MEQ.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-17T15:54:39,310   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/5JP.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-17T15:54:39,313   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/HTR.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-17T15:54:39,317   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/0BN.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-17T15:54:39,320   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/HLU.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-17T15:54:39,323   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/IIL.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-17T15:54:39,326   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/MME.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-17T15:54:39,330   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/AA4.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-17T15:54:39,333   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/4IN.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-17T15:54:39,336   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/CSS.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-17T15:54:39,340   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/P1L.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-17T15:54:39,344   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/DAH.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-17T15:54:39,347   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/OMX.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-17T15:54:39,350   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/ORM.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-17T15:54:39,353   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/LMQ.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-17T15:54:39,355   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/YNM.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-17T15:54:39,357   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/NVA.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-17T15:54:39,360   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/IIL.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-17T15:54:39,362   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/CSS.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-17T15:54:39,365   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/HTR.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-17T15:54:39,367   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/OMX.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-17T15:54:39,370   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/2MR.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-17T15:54:39,372   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/MMO.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-17T15:54:39,375   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/004.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-17T15:54:39,377   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/IGL.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-17T15:54:39,380   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/MLE.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-17T15:54:39,383   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/PTR.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-17T15:54:39,387   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/ONL.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-17T15:54:39,392   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/MLY.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-17T15:54:39,396   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/MLE.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-17T15:54:39,400   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/PTR.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-17T15:54:39,402   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/MLZ.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-17T15:54:39,406   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/LME.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-17T15:54:39,409   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/5JP.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-17T15:54:39,412   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/TYQ.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-17T15:54:39,416   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/BCS.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-17T15:54:39,418   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/LMQ.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-17T15:54:39,421   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/2AS.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-17T15:54:39,424   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/MEA.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-17T15:54:39,427   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/CCS.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-17T15:54:39,434   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/NLE.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-17T15:54:39,656   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/DAB.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-17T15:54:39,663   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/HOX.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-17T15:54:39,668   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/TPO.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-17T15:54:39,675   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/MLZ.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-17T15:54:39,680   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/CSO.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-17T15:54:39,687   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/SEP.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-17T15:54:39,727   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/AA4.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-17T15:54:39,733   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/TYQ.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-17T15:54:39,738   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/CSO.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-17T15:54:39,743   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/ALN.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-17T15:54:39,746   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/SEP.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-17T15:54:39,751   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/CCS.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-17T15:54:39,967   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/HLX.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-17T15:54:39,972   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/HLX.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-17T15:54:39,978   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/BTK.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-17T15:54:39,982   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/ABA.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-17T15:54:39,987   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/CSP.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-17T15:54:39,995   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/4PH.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-17T15:54:40,001   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/P1L.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-17T15:54:40,007   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/ME0.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-17T15:54:40,013   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/PRK.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-17T15:54:40,020   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/1MH.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-17T15:54:40,025   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/HYP.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-17T15:54:40,075   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/GNC.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-17T15:54:40,078   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/ALN.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-17T15:54:40,081   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/NZC.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-17T15:54:40,084   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/MVA.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-17T15:54:40,088   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/MEA.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-17T15:54:40,093   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/MEN.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-17T15:54:40,096   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/AHP.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-17T15:54:40,100   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/KYN.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-17T15:54:40,103   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/ONL.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-17T15:54:40,106   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/1MH.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-17T15:54:40,109   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/4IN.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-17T15:54:40,112   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/DPP.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-17T15:54:40,116   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/ALY.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-17T15:54:40,119   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/YCM.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-17T15:54:40,122   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/HQA.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-17T15:54:40,125   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/4PQ.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-17T15:54:40,129   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/M3L.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-17T15:54:40,131   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/HPE.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-17T15:54:40,134   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/TRO.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-17T15:54:40,137   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/ORM.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-17T15:54:40,140   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/TY2.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-17T15:54:40,142   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/NLE.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-17T15:54:40,145   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/2ML.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-17T15:54:40,148   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/YNM.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-17T15:54:40,151   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/MEQ.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-17T15:54:40,153   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/IML.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-17T15:54:40,155   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/0A1.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-17T15:54:40,158   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/HLU.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-17T15:54:40,161   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/2ML.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-17T15:54:40,165   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/2GX.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-17T15:54:40,167   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/2AS.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-17T15:54:40,170   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/ESC.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-17T15:54:40,172   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/OCY.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-17T15:54:40,175   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/CGU.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-17T15:54:40,177   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/D4P.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-17T15:54:40,179   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/CSA.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-17T15:54:40,182   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/DAH.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-17T15:54:40,184   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/DA2.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-17T15:54:40,187   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/PRK.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-17T15:54:40,190   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/HYP.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-17T15:54:40,192   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/NAL.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-17T15:54:40,195   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/4PH.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-06-17T15:54:40,198   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/ALA.cif -> build/bdist.linux-armv7l/wheel/moleculekit/share
2024-06-17T15:54:40,200   copying build/lib.linux-armv7l-cpython-311/moleculekit/version.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-06-17T15:54:40,202   copying build/lib.linux-armv7l-cpython-311/moleculekit/home.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-06-17T15:54:40,204   creating build/bdist.linux-armv7l/wheel/moleculekit/tmalign
2024-06-17T15:54:40,205   creating build/bdist.linux-armv7l/wheel/moleculekit/tmalign/src
2024-06-17T15:54:40,206   copying build/lib.linux-armv7l-cpython-311/moleculekit/tmalign/src/TMAlign.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/tmalign/src
2024-06-17T15:54:40,218   copying build/lib.linux-armv7l-cpython-311/moleculekit/tmalign/tmalign_util.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/tmalign
2024-06-17T15:54:40,360   copying build/lib.linux-armv7l-cpython-311/moleculekit/tmalign/tmalignlib.pxd -> build/bdist.linux-armv7l/wheel/moleculekit/tmalign
2024-06-17T15:54:40,365   creating build/bdist.linux-armv7l/wheel/moleculekit/tmalign/include
2024-06-17T15:54:40,366   copying build/lib.linux-armv7l-cpython-311/moleculekit/tmalign/include/TMAlign.h -> build/bdist.linux-armv7l/wheel/moleculekit/tmalign/include
2024-06-17T15:54:40,372   copying build/lib.linux-armv7l-cpython-311/moleculekit/tmalign/tmalign_util.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/tmalign
2024-06-17T15:54:40,379   creating build/bdist.linux-armv7l/wheel/moleculekit/tools
2024-06-17T15:54:40,381   copying build/lib.linux-armv7l-cpython-311/moleculekit/tools/atomtyper.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2024-06-17T15:54:40,389   copying build/lib.linux-armv7l-cpython-311/moleculekit/tools/preparation.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2024-06-17T15:54:40,610   copying build/lib.linux-armv7l-cpython-311/moleculekit/tools/voxeldescriptors.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2024-06-17T15:54:40,618   creating build/bdist.linux-armv7l/wheel/moleculekit/tools/obabel_tools
2024-06-17T15:54:40,620   copying build/lib.linux-armv7l-cpython-311/moleculekit/tools/obabel_tools/obabel_cli.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools/obabel_tools
2024-06-17T15:54:40,624   copying build/lib.linux-armv7l-cpython-311/moleculekit/tools/obabel_tools/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools/obabel_tools
2024-06-17T15:54:40,627   copying build/lib.linux-armv7l-cpython-311/moleculekit/tools/moleculechecks.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2024-06-17T15:54:40,631   copying build/lib.linux-armv7l-cpython-311/moleculekit/tools/docking.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2024-06-17T15:54:40,635   copying build/lib.linux-armv7l-cpython-311/moleculekit/tools/modelling.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2024-06-17T15:54:40,642   copying build/lib.linux-armv7l-cpython-311/moleculekit/tools/hhblitsprofile.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2024-06-17T15:54:40,678   copying build/lib.linux-armv7l-cpython-311/moleculekit/tools/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2024-06-17T15:54:40,683   copying build/lib.linux-armv7l-cpython-311/moleculekit/tools/preparation_customres.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2024-06-17T15:54:40,687   copying build/lib.linux-armv7l-cpython-311/moleculekit/tools/sequencestructuralalignment.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2024-06-17T15:54:40,691   copying build/lib.linux-armv7l-cpython-311/moleculekit/tools/autosegment.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2024-06-17T15:54:40,695   copying build/lib.linux-armv7l-cpython-311/moleculekit/tools/detect.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2024-06-17T15:54:40,701   copying build/lib.linux-armv7l-cpython-311/moleculekit/tools/graphalignment.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2024-06-17T15:54:40,926   copying build/lib.linux-armv7l-cpython-311/moleculekit/tools/crystalpacking.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2024-06-17T15:54:40,931   copying build/lib.linux-armv7l-cpython-311/moleculekit/rcsb.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-06-17T15:54:40,935   copying build/lib.linux-armv7l-cpython-311/moleculekit/vmd_wrapper -> build/bdist.linux-armv7l/wheel/moleculekit
2024-06-17T15:54:40,939   copying build/lib.linux-armv7l-cpython-311/moleculekit/wrapping.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2024-06-17T15:54:40,988   copying build/lib.linux-armv7l-cpython-311/moleculekit/align.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-06-17T15:54:40,992   copying build/lib.linux-armv7l-cpython-311/moleculekit/occupancy_utils.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2024-06-17T15:54:41,029   creating build/bdist.linux-armv7l/wheel/moleculekit/pdbx
2024-06-17T15:54:41,031   creating build/bdist.linux-armv7l/wheel/moleculekit/pdbx/writer
2024-06-17T15:54:41,033   copying build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/writer/PdbxWriter.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/writer
2024-06-17T15:54:41,037   copying build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/writer/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/writer
2024-06-17T15:54:41,040   copying build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx
2024-06-17T15:54:41,042   creating build/bdist.linux-armv7l/wheel/moleculekit/pdbx/tests
2024-06-17T15:54:41,044   copying build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/tests/PdbxWriterTests.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/tests
2024-06-17T15:54:41,048   copying build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/tests/PdbxReadWriteTests.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/tests
2024-06-17T15:54:41,051   copying build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/tests/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/tests
2024-06-17T15:54:41,053   copying build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/tests/PdbxReaderTests.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/tests
2024-06-17T15:54:41,058   creating build/bdist.linux-armv7l/wheel/moleculekit/pdbx/reader
2024-06-17T15:54:41,059   copying build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/reader/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/reader
2024-06-17T15:54:41,062   copying build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/reader/PdbxReader.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/reader
2024-06-17T15:54:41,066   copying build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/reader/PdbxParser.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/reader
2024-06-17T15:54:41,070   copying build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/reader/PdbxContainers.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/reader
2024-06-17T15:54:41,074   copying build/lib.linux-armv7l-cpython-311/moleculekit/viewer.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-06-17T15:54:41,077   copying build/lib.linux-armv7l-cpython-311/moleculekit/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-06-17T15:54:41,080   copying build/lib.linux-armv7l-cpython-311/moleculekit/readers.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-06-17T15:54:41,135   copying build/lib.linux-armv7l-cpython-311/moleculekit/writers.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-06-17T15:54:41,141   creating build/bdist.linux-armv7l/wheel/moleculekit/wrapping
2024-06-17T15:54:41,142   copying build/lib.linux-armv7l-cpython-311/moleculekit/wrapping/wrapping.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/wrapping
2024-06-17T15:54:41,146   copying build/lib.linux-armv7l-cpython-311/moleculekit/wrapping/wrapping.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/wrapping
2024-06-17T15:54:41,178   creating build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2024-06-17T15:54:41,180   copying build/lib.linux-armv7l-cpython-311/moleculekit/smallmol/test_smallmol.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2024-06-17T15:54:41,184   creating build/bdist.linux-armv7l/wheel/moleculekit/smallmol/tools
2024-06-17T15:54:41,185   copying build/lib.linux-armv7l-cpython-311/moleculekit/smallmol/tools/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol/tools
2024-06-17T15:54:41,188   copying build/lib.linux-armv7l-cpython-311/moleculekit/smallmol/tools/test_tools.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol/tools
2024-06-17T15:54:41,191   copying build/lib.linux-armv7l-cpython-311/moleculekit/smallmol/tools/restrainedembed.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol/tools
2024-06-17T15:54:41,194   copying build/lib.linux-armv7l-cpython-311/moleculekit/smallmol/tools/clustering.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol/tools
2024-06-17T15:54:41,198   copying build/lib.linux-armv7l-cpython-311/moleculekit/smallmol/smallmolcdp.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2024-06-17T15:54:41,201   copying build/lib.linux-armv7l-cpython-311/moleculekit/smallmol/test_smallmollib.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2024-06-17T15:54:41,204   copying build/lib.linux-armv7l-cpython-311/moleculekit/smallmol/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2024-06-17T15:54:41,207   copying build/lib.linux-armv7l-cpython-311/moleculekit/smallmol/smallmollib.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2024-06-17T15:54:41,210   copying build/lib.linux-armv7l-cpython-311/moleculekit/smallmol/util.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2024-06-17T15:54:41,214   copying build/lib.linux-armv7l-cpython-311/moleculekit/smallmol/smallmol.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2024-06-17T15:54:41,219   creating build/bdist.linux-armv7l/wheel/moleculekit/interactions
2024-06-17T15:54:41,220   copying build/lib.linux-armv7l-cpython-311/moleculekit/interactions/cationpi.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit/interactions
2024-06-17T15:54:41,257   copying build/lib.linux-armv7l-cpython-311/moleculekit/interactions/sigmahole.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit/interactions
2024-06-17T15:54:41,294   creating build/bdist.linux-armv7l/wheel/moleculekit/interactions/pipi
2024-06-17T15:54:41,296   copying build/lib.linux-armv7l-cpython-311/moleculekit/interactions/pipi/pipi.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/pipi
2024-06-17T15:54:41,299   copying build/lib.linux-armv7l-cpython-311/moleculekit/interactions/pipi/pipi.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/pipi
2024-06-17T15:54:41,327   copying build/lib.linux-armv7l-cpython-311/moleculekit/interactions/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/interactions
2024-06-17T15:54:41,331   creating build/bdist.linux-armv7l/wheel/moleculekit/interactions/sigmahole
2024-06-17T15:54:41,333   copying build/lib.linux-armv7l-cpython-311/moleculekit/interactions/sigmahole/sigmahole.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/sigmahole
2024-06-17T15:54:41,336   copying build/lib.linux-armv7l-cpython-311/moleculekit/interactions/sigmahole/sigmahole.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/sigmahole
2024-06-17T15:54:41,364   creating build/bdist.linux-armv7l/wheel/moleculekit/interactions/cationpi
2024-06-17T15:54:41,365   copying build/lib.linux-armv7l-cpython-311/moleculekit/interactions/cationpi/cationpi.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/cationpi
2024-06-17T15:54:41,427   copying build/lib.linux-armv7l-cpython-311/moleculekit/interactions/cationpi/cationpi.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/cationpi
2024-06-17T15:54:41,431   copying build/lib.linux-armv7l-cpython-311/moleculekit/interactions/hbonds.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit/interactions
2024-06-17T15:54:41,469   copying build/lib.linux-armv7l-cpython-311/moleculekit/interactions/pipi.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit/interactions
2024-06-17T15:54:41,501   copying build/lib.linux-armv7l-cpython-311/moleculekit/interactions/interactions.py -> build/bdist.linux-armv7l/wheel/moleculekit/interactions
2024-06-17T15:54:41,505   creating build/bdist.linux-armv7l/wheel/moleculekit/interactions/hbonds
2024-06-17T15:54:41,506   copying build/lib.linux-armv7l-cpython-311/moleculekit/interactions/hbonds/hbonds.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/hbonds
2024-06-17T15:54:41,534   copying build/lib.linux-armv7l-cpython-311/moleculekit/interactions/hbonds/hbonds.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/hbonds
2024-06-17T15:54:41,538   copying build/lib.linux-armv7l-cpython-311/moleculekit/config.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-06-17T15:54:41,540   creating build/bdist.linux-armv7l/wheel/moleculekit/atomselect
2024-06-17T15:54:41,542   copying build/lib.linux-armv7l-cpython-311/moleculekit/atomselect/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/atomselect
2024-06-17T15:54:41,544   copying build/lib.linux-armv7l-cpython-311/moleculekit/atomselect/atomselect.py -> build/bdist.linux-armv7l/wheel/moleculekit/atomselect
2024-06-17T15:54:41,547   copying build/lib.linux-armv7l-cpython-311/moleculekit/atomselect/languageparser.py -> build/bdist.linux-armv7l/wheel/moleculekit/atomselect
2024-06-17T15:54:41,550   copying build/lib.linux-armv7l-cpython-311/moleculekit/atomselect/analyze.py -> build/bdist.linux-armv7l/wheel/moleculekit/atomselect
2024-06-17T15:54:41,553   creating build/bdist.linux-armv7l/wheel/moleculekit/occupancy_utils
2024-06-17T15:54:41,554   copying build/lib.linux-armv7l-cpython-311/moleculekit/occupancy_utils/occupancy_utils.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/occupancy_utils
2024-06-17T15:54:41,557   copying build/lib.linux-armv7l-cpython-311/moleculekit/occupancy_utils/occupancy_utils.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/occupancy_utils
2024-06-17T15:54:41,630   copying build/lib.linux-armv7l-cpython-311/moleculekit/bondguesser.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-06-17T15:54:41,633   copying build/lib.linux-armv7l-cpython-311/moleculekit/opm.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-06-17T15:54:41,637   creating build/bdist.linux-armv7l/wheel/moleculekit/cython_utils
2024-06-17T15:54:41,638   copying build/lib.linux-armv7l-cpython-311/moleculekit/cython_utils/cython_utils.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/cython_utils
2024-06-17T15:54:41,673   copying build/lib.linux-armv7l-cpython-311/moleculekit/cython_utils/cython_utils.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/cython_utils
2024-06-17T15:54:41,676   copying build/lib.linux-armv7l-cpython-311/moleculekit/binpos.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2024-06-17T15:54:41,698   creating build/bdist.linux-armv7l/wheel/moleculekit/projections
2024-06-17T15:54:41,699   copying build/lib.linux-armv7l-cpython-311/moleculekit/projections/metricsasa.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2024-06-17T15:54:41,702   copying build/lib.linux-armv7l-cpython-311/moleculekit/projections/metricsecondarystructure.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2024-06-17T15:54:41,706   copying build/lib.linux-armv7l-cpython-311/moleculekit/projections/metricplumed2.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2024-06-17T15:54:41,710   copying build/lib.linux-armv7l-cpython-311/moleculekit/projections/metriccoordinate.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2024-06-17T15:54:41,713   copying build/lib.linux-armv7l-cpython-311/moleculekit/projections/metricdihedral.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2024-06-17T15:54:41,717   copying build/lib.linux-armv7l-cpython-311/moleculekit/projections/metricsphericalcoordinate.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2024-06-17T15:54:41,721   copying build/lib.linux-armv7l-cpython-311/moleculekit/projections/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2024-06-17T15:54:41,723   copying build/lib.linux-armv7l-cpython-311/moleculekit/projections/metricshell.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2024-06-17T15:54:41,726   copying build/lib.linux-armv7l-cpython-311/moleculekit/projections/metricgyration.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2024-06-17T15:54:41,729   copying build/lib.linux-armv7l-cpython-311/moleculekit/projections/metricdistance.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2024-06-17T15:54:41,733   copying build/lib.linux-armv7l-cpython-311/moleculekit/projections/metrictmscore.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2024-06-17T15:54:41,736   copying build/lib.linux-armv7l-cpython-311/moleculekit/projections/metricrmsd.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2024-06-17T15:54:41,739   copying build/lib.linux-armv7l-cpython-311/moleculekit/projections/projection.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2024-06-17T15:54:41,742   copying build/lib.linux-armv7l-cpython-311/moleculekit/projections/metricfluctuation.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2024-06-17T15:54:41,746   copying build/lib.linux-armv7l-cpython-311/moleculekit/projections/util.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2024-06-17T15:54:41,750   copying build/lib.linux-armv7l-cpython-311/moleculekit/cython_utils.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2024-06-17T15:54:41,786   creating build/bdist.linux-armv7l/wheel/moleculekit/distance_utils
2024-06-17T15:54:41,787   copying build/lib.linux-armv7l-cpython-311/moleculekit/distance_utils/distance_utils.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/distance_utils
2024-06-17T15:54:41,837   copying build/lib.linux-armv7l-cpython-311/moleculekit/distance_utils/distance_utils.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/distance_utils
2024-06-17T15:54:41,840   copying build/lib.linux-armv7l-cpython-311/moleculekit/dihedral.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-06-17T15:54:41,842   copying build/lib.linux-armv7l-cpython-311/moleculekit/xtc.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2024-06-17T15:54:41,870   creating build/bdist.linux-armv7l/wheel/moleculekit/atomselect_utils
2024-06-17T15:54:41,871   copying build/lib.linux-armv7l-cpython-311/moleculekit/atomselect_utils/atomselect_utils.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/atomselect_utils
2024-06-17T15:54:41,875   copying build/lib.linux-armv7l-cpython-311/moleculekit/atomselect_utils/atomselect_utils.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/atomselect_utils
2024-06-17T15:54:41,910   copying build/lib.linux-armv7l-cpython-311/moleculekit/distance.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-06-17T15:54:41,914   creating build/bdist.linux-armv7l/wheel/moleculekit/ply
2024-06-17T15:54:41,916   copying build/lib.linux-armv7l-cpython-311/moleculekit/ply/yacc.py -> build/bdist.linux-armv7l/wheel/moleculekit/ply
2024-06-17T15:54:41,921   copying build/lib.linux-armv7l-cpython-311/moleculekit/ply/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/ply
2024-06-17T15:54:41,924   copying build/lib.linux-armv7l-cpython-311/moleculekit/ply/lex.py -> build/bdist.linux-armv7l/wheel/moleculekit/ply
2024-06-17T15:54:41,928   copying build/lib.linux-armv7l-cpython-311/moleculekit/trr.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2024-06-17T15:54:41,967   copying build/lib.linux-armv7l-cpython-311/moleculekit/vmdviewer.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-06-17T15:54:41,970   creating build/bdist.linux-armv7l/wheel/moleculekit/fileformats
2024-06-17T15:54:41,972   creating build/bdist.linux-armv7l/wheel/moleculekit/fileformats/binpos
2024-06-17T15:54:41,974   copying build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/binpos/binposlib.pxd -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/binpos
2024-06-17T15:54:41,976   creating build/bdist.linux-armv7l/wheel/moleculekit/fileformats/binpos/src
2024-06-17T15:54:41,977   copying build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/binpos/src/binposplugin.c -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/binpos/src
2024-06-17T15:54:41,980   copying build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/binpos/binpos.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/binpos
2024-06-17T15:54:41,983   copying build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/binpos/binpos.c -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/binpos
2024-06-17T15:54:42,047   creating build/bdist.linux-armv7l/wheel/moleculekit/fileformats/binpos/include
2024-06-17T15:54:42,049   copying build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/binpos/include/binposplugin.h -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/binpos/include
2024-06-17T15:54:42,052   copying build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/binpos/include/largefiles.h -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/binpos/include
2024-06-17T15:54:42,055   copying build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/binpos/include/molfile_plugin.h -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/binpos/include
2024-06-17T15:54:42,062   copying build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/utils.py -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats
2024-06-17T15:54:42,069   copying build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats
2024-06-17T15:54:42,077   creating build/bdist.linux-armv7l/wheel/moleculekit/fileformats/dcd
2024-06-17T15:54:42,083   creating build/bdist.linux-armv7l/wheel/moleculekit/fileformats/dcd/src
2024-06-17T15:54:42,086   copying build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/dcd/src/dcdplugin.c -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/dcd/src
2024-06-17T15:54:42,091   copying build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/dcd/dcd.c -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/dcd
2024-06-17T15:54:42,156   copying build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/dcd/dcdlib.pxd -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/dcd
2024-06-17T15:54:42,160   creating build/bdist.linux-armv7l/wheel/moleculekit/fileformats/dcd/include
2024-06-17T15:54:42,161   copying build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/dcd/include/endianswap.h -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/dcd/include
2024-06-17T15:54:42,165   copying build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/dcd/include/largefiles.h -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/dcd/include
2024-06-17T15:54:42,168   copying build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/dcd/include/molfile_plugin.h -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/dcd/include
2024-06-17T15:54:42,172   copying build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/dcd/include/fastio.h -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/dcd/include
2024-06-17T15:54:42,176   copying build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/dcd/include/dcdplugin.h -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/dcd/include
2024-06-17T15:54:42,178   copying build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/dcd/dcd.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/dcd
2024-06-17T15:54:42,183   creating build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc
2024-06-17T15:54:42,184   copying build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/xtc.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc
2024-06-17T15:54:42,187   copying build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/trr.c -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc
2024-06-17T15:54:42,233   creating build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc/src
2024-06-17T15:54:42,234   copying build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/src/xdrfile_trr.c -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc/src
2024-06-17T15:54:42,238   copying build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/src/xdrfile.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc/src
2024-06-17T15:54:42,244   copying build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/src/xdrfile_xtc.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc/src
2024-06-17T15:54:42,246   copying build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/src/xdr_seek.c -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc/src
2024-06-17T15:54:42,249   copying build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/src/xtc.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc/src
2024-06-17T15:54:42,252   copying build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/xtclib.pxd -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc
2024-06-17T15:54:42,254   copying build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/trr.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc
2024-06-17T15:54:42,258   copying build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/xdrlib.pxd -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc
2024-06-17T15:54:42,262   creating build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc/include
2024-06-17T15:54:42,263   copying build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/include/xdrfile_xtc.h -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc/include
2024-06-17T15:54:42,265   copying build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/include/xtc.h -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc/include
2024-06-17T15:54:42,267   copying build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/include/xdr_seek.h -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc/include
2024-06-17T15:54:42,270   copying build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/include/xdrfile_trr.h -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc/include
2024-06-17T15:54:42,272   copying build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/include/trr_header.h -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc/include
2024-06-17T15:54:42,275   copying build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/include/xdrfile.h -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc/include
2024-06-17T15:54:42,278   copying build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/xtc.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc
2024-06-17T15:54:42,307   copying build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/trrlib.pxd -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc
2024-06-17T15:54:42,310   copying build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/netcdf.py -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats
2024-06-17T15:54:42,313   copying build/lib.linux-armv7l-cpython-311/moleculekit/util.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-06-17T15:54:42,317   creating build/bdist.linux-armv7l/wheel/moleculekit/bondguesser_utils
2024-06-17T15:54:42,319   copying build/lib.linux-armv7l-cpython-311/moleculekit/bondguesser_utils/bondguesser_utils.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/bondguesser_utils
2024-06-17T15:54:42,397   copying build/lib.linux-armv7l-cpython-311/moleculekit/bondguesser_utils/bondguesser_utils.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/bondguesser_utils
2024-06-17T15:54:42,401   copying build/lib.linux-armv7l-cpython-311/moleculekit/distance_utils.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2024-06-17T15:54:42,450   running install_egg_info
2024-06-17T15:54:42,456   Copying moleculekit.egg-info to build/bdist.linux-armv7l/wheel/moleculekit-1.8.34-py3.11.egg-info
2024-06-17T15:54:42,470   running install_scripts
2024-06-17T15:54:42,522   creating build/bdist.linux-armv7l/wheel/moleculekit-1.8.34.dist-info/WHEEL
2024-06-17T15:54:42,526   creating '/tmp/pip-wheel-265rkmtl/.tmp-c4ec2t91/moleculekit-1.8.34-cp311-cp311-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2024-06-17T15:54:42,531   adding 'moleculekit/__init__.py'
2024-06-17T15:54:42,533   adding 'moleculekit/_version.py'
2024-06-17T15:54:42,536   adding 'moleculekit/align.py'
2024-06-17T15:54:42,856   adding 'moleculekit/atomselect_utils.cpython-311-arm-linux-gnueabihf.so'
2024-06-17T15:54:43,019   adding 'moleculekit/binpos.cpython-311-arm-linux-gnueabihf.so'
2024-06-17T15:54:43,026   adding 'moleculekit/bondguesser.py'
2024-06-17T15:54:43,271   adding 'moleculekit/bondguesser_utils.cpython-311-arm-linux-gnueabihf.so'
2024-06-17T15:54:43,280   adding 'moleculekit/config.py'
2024-06-17T15:54:43,538   adding 'moleculekit/cython_utils.cpython-311-arm-linux-gnueabihf.so'
2024-06-17T15:54:43,699   adding 'moleculekit/dcd.cpython-311-arm-linux-gnueabihf.so'
2024-06-17T15:54:43,706   adding 'moleculekit/dihedral.py'
2024-06-17T15:54:43,707   adding 'moleculekit/distance.py'
2024-06-17T15:54:44,024   adding 'moleculekit/distance_utils.cpython-311-arm-linux-gnueabihf.so'
2024-06-17T15:54:44,035   adding 'moleculekit/home.py'
2024-06-17T15:54:44,037   adding 'moleculekit/logging.ini'
2024-06-17T15:54:44,052   adding 'moleculekit/molecule.py'
2024-06-17T15:54:44,285   adding 'moleculekit/occupancy_utils.cpython-311-arm-linux-gnueabihf.so'
2024-06-17T15:54:44,294   adding 'moleculekit/opm.py'
2024-06-17T15:54:44,297   adding 'moleculekit/periodictable.py'
2024-06-17T15:54:44,298   adding 'moleculekit/pymolgraphics.py'
2024-06-17T15:54:44,300   adding 'moleculekit/rcsb.py'
2024-06-17T15:54:44,302   adding 'moleculekit/rdkitintegration.py'
2024-06-17T15:54:44,316   adding 'moleculekit/readers.py'
2024-06-17T15:54:44,910   adding 'moleculekit/tmalign.cpython-311-arm-linux-gnueabihf.so'
2024-06-17T15:54:45,212   adding 'moleculekit/trr.cpython-311-arm-linux-gnueabihf.so'
2024-06-17T15:54:45,224   adding 'moleculekit/util.py'
2024-06-17T15:54:45,226   adding 'moleculekit/version.py'
2024-06-17T15:54:45,228   adding 'moleculekit/viewer.py'
2024-06-17T15:54:45,230   adding 'moleculekit/vmd_wrapper'
2024-06-17T15:54:45,232   adding 'moleculekit/vmdgraphics.py'
2024-06-17T15:54:45,235   adding 'moleculekit/vmdviewer.py'
2024-06-17T15:54:45,493   adding 'moleculekit/wrapping.cpython-311-arm-linux-gnueabihf.so'
2024-06-17T15:54:45,507   adding 'moleculekit/writers.py'
2024-06-17T15:54:45,767   adding 'moleculekit/xtc.cpython-311-arm-linux-gnueabihf.so'
2024-06-17T15:54:45,776   adding 'moleculekit/atomselect/__init__.py'
2024-06-17T15:54:45,778   adding 'moleculekit/atomselect/analyze.py'
2024-06-17T15:54:45,781   adding 'moleculekit/atomselect/atomselect.py'
2024-06-17T15:54:45,783   adding 'moleculekit/atomselect/languageparser.py'
2024-06-17T15:54:45,886   adding 'moleculekit/atomselect_utils/atomselect_utils.cpp'
2024-06-17T15:54:45,898   adding 'moleculekit/atomselect_utils/atomselect_utils.pyx'
2024-06-17T15:54:45,989   adding 'moleculekit/bondguesser_utils/bondguesser_utils.cpp'
2024-06-17T15:54:45,998   adding 'moleculekit/bondguesser_utils/bondguesser_utils.pyx'
2024-06-17T15:54:46,087   adding 'moleculekit/cython_utils/cython_utils.cpp'
2024-06-17T15:54:46,097   adding 'moleculekit/cython_utils/cython_utils.pyx'
2024-06-17T15:54:46,199   adding 'moleculekit/distance_utils/distance_utils.cpp'
2024-06-17T15:54:46,210   adding 'moleculekit/distance_utils/distance_utils.pyx'
2024-06-17T15:54:46,212   adding 'moleculekit/fileformats/__init__.py'
2024-06-17T15:54:46,219   adding 'moleculekit/fileformats/netcdf.py'
2024-06-17T15:54:46,221   adding 'moleculekit/fileformats/utils.py'
2024-06-17T15:54:46,282   adding 'moleculekit/fileformats/binpos/binpos.c'
2024-06-17T15:54:46,289   adding 'moleculekit/fileformats/binpos/binpos.pyx'
2024-06-17T15:54:46,291   adding 'moleculekit/fileformats/binpos/binposlib.pxd'
2024-06-17T15:54:46,293   adding 'moleculekit/fileformats/binpos/include/binposplugin.h'
2024-06-17T15:54:46,294   adding 'moleculekit/fileformats/binpos/include/largefiles.h'
2024-06-17T15:54:46,299   adding 'moleculekit/fileformats/binpos/include/molfile_plugin.h'
2024-06-17T15:54:46,302   adding 'moleculekit/fileformats/binpos/src/binposplugin.c'
2024-06-17T15:54:46,365   adding 'moleculekit/fileformats/dcd/dcd.c'
2024-06-17T15:54:46,373   adding 'moleculekit/fileformats/dcd/dcd.pyx'
2024-06-17T15:54:46,374   adding 'moleculekit/fileformats/dcd/dcdlib.pxd'
2024-06-17T15:54:46,377   adding 'moleculekit/fileformats/dcd/include/dcdplugin.h'
2024-06-17T15:54:46,378   adding 'moleculekit/fileformats/dcd/include/endianswap.h'
2024-06-17T15:54:46,380   adding 'moleculekit/fileformats/dcd/include/fastio.h'
2024-06-17T15:54:46,381   adding 'moleculekit/fileformats/dcd/include/largefiles.h'
2024-06-17T15:54:46,386   adding 'moleculekit/fileformats/dcd/include/molfile_plugin.h'
2024-06-17T15:54:46,392   adding 'moleculekit/fileformats/dcd/src/dcdplugin.c'
2024-06-17T15:54:46,486   adding 'moleculekit/fileformats/xtc/trr.c'
2024-06-17T15:54:46,497   adding 'moleculekit/fileformats/xtc/trr.pyx'
2024-06-17T15:54:46,498   adding 'moleculekit/fileformats/xtc/trrlib.pxd'
2024-06-17T15:54:46,499   adding 'moleculekit/fileformats/xtc/xdrlib.pxd'
2024-06-17T15:54:46,590   adding 'moleculekit/fileformats/xtc/xtc.cpp'
2024-06-17T15:54:46,599   adding 'moleculekit/fileformats/xtc/xtc.pyx'
2024-06-17T15:54:46,601   adding 'moleculekit/fileformats/xtc/xtclib.pxd'
2024-06-17T15:54:46,603   adding 'moleculekit/fileformats/xtc/include/trr_header.h'
2024-06-17T15:54:46,604   adding 'moleculekit/fileformats/xtc/include/xdr_seek.h'
2024-06-17T15:54:46,607   adding 'moleculekit/fileformats/xtc/include/xdrfile.h'
2024-06-17T15:54:46,609   adding 'moleculekit/fileformats/xtc/include/xdrfile_trr.h'
2024-06-17T15:54:46,610   adding 'moleculekit/fileformats/xtc/include/xdrfile_xtc.h'
2024-06-17T15:54:46,611   adding 'moleculekit/fileformats/xtc/include/xtc.h'
2024-06-17T15:54:46,613   adding 'moleculekit/fileformats/xtc/src/xdr_seek.c'
2024-06-17T15:54:46,620   adding 'moleculekit/fileformats/xtc/src/xdrfile.cpp'
2024-06-17T15:54:46,622   adding 'moleculekit/fileformats/xtc/src/xdrfile_trr.c'
2024-06-17T15:54:46,624   adding 'moleculekit/fileformats/xtc/src/xdrfile_xtc.cpp'
2024-06-17T15:54:46,626   adding 'moleculekit/fileformats/xtc/src/xtc.cpp'
2024-06-17T15:54:46,628   adding 'moleculekit/interactions/__init__.py'
2024-06-17T15:54:46,907   adding 'moleculekit/interactions/cationpi.cpython-311-arm-linux-gnueabihf.so'
2024-06-17T15:54:47,172   adding 'moleculekit/interactions/hbonds.cpython-311-arm-linux-gnueabihf.so'
2024-06-17T15:54:47,183   adding 'moleculekit/interactions/interactions.py'
2024-06-17T15:54:47,459   adding 'moleculekit/interactions/pipi.cpython-311-arm-linux-gnueabihf.so'
2024-06-17T15:54:47,741   adding 'moleculekit/interactions/sigmahole.cpython-311-arm-linux-gnueabihf.so'
2024-06-17T15:54:47,845   adding 'moleculekit/interactions/cationpi/cationpi.cpp'
2024-06-17T15:54:47,854   adding 'moleculekit/interactions/cationpi/cationpi.pyx'
2024-06-17T15:54:47,944   adding 'moleculekit/interactions/hbonds/hbonds.cpp'
2024-06-17T15:54:47,953   adding 'moleculekit/interactions/hbonds/hbonds.pyx'
2024-06-17T15:54:48,044   adding 'moleculekit/interactions/pipi/pipi.cpp'
2024-06-17T15:54:48,053   adding 'moleculekit/interactions/pipi/pipi.pyx'
2024-06-17T15:54:48,144   adding 'moleculekit/interactions/sigmahole/sigmahole.cpp'
2024-06-17T15:54:48,153   adding 'moleculekit/interactions/sigmahole/sigmahole.pyx'
2024-06-17T15:54:48,239   adding 'moleculekit/occupancy_utils/occupancy_utils.cpp'
2024-06-17T15:54:48,247   adding 'moleculekit/occupancy_utils/occupancy_utils.pyx'
2024-06-17T15:54:48,249   adding 'moleculekit/pdbx/__init__.py'
2024-06-17T15:54:48,252   adding 'moleculekit/pdbx/reader/PdbxContainers.py'
2024-06-17T15:54:48,256   adding 'moleculekit/pdbx/reader/PdbxParser.py'
2024-06-17T15:54:48,258   adding 'moleculekit/pdbx/reader/PdbxReader.py'
2024-06-17T15:54:48,259   adding 'moleculekit/pdbx/reader/__init__.py'
2024-06-17T15:54:48,261   adding 'moleculekit/pdbx/tests/PdbxReadWriteTests.py'
2024-06-17T15:54:48,263   adding 'moleculekit/pdbx/tests/PdbxReaderTests.py'
2024-06-17T15:54:48,265   adding 'moleculekit/pdbx/tests/PdbxWriterTests.py'
2024-06-17T15:54:48,266   adding 'moleculekit/pdbx/tests/__init__.py'
2024-06-17T15:54:48,268   adding 'moleculekit/pdbx/writer/PdbxWriter.py'
2024-06-17T15:54:48,269   adding 'moleculekit/pdbx/writer/__init__.py'
2024-06-17T15:54:48,271   adding 'moleculekit/ply/__init__.py'
2024-06-17T15:54:48,276   adding 'moleculekit/ply/lex.py'
2024-06-17T15:54:48,287   adding 'moleculekit/ply/yacc.py'
2024-06-17T15:54:48,290   adding 'moleculekit/projections/__init__.py'
2024-06-17T15:54:48,292   adding 'moleculekit/projections/metriccoordinate.py'
2024-06-17T15:54:48,295   adding 'moleculekit/projections/metricdihedral.py'
2024-06-17T15:54:48,299   adding 'moleculekit/projections/metricdistance.py'
2024-06-17T15:54:48,301   adding 'moleculekit/projections/metricfluctuation.py'
2024-06-17T15:54:48,303   adding 'moleculekit/projections/metricgyration.py'
2024-06-17T15:54:48,306   adding 'moleculekit/projections/metricplumed2.py'
2024-06-17T15:54:48,308   adding 'moleculekit/projections/metricrmsd.py'
2024-06-17T15:54:48,310   adding 'moleculekit/projections/metricsasa.py'
2024-06-17T15:54:48,312   adding 'moleculekit/projections/metricsecondarystructure.py'
2024-06-17T15:54:48,314   adding 'moleculekit/projections/metricshell.py'
2024-06-17T15:54:48,316   adding 'moleculekit/projections/metricsphericalcoordinate.py'
2024-06-17T15:54:48,317   adding 'moleculekit/projections/metrictmscore.py'
2024-06-17T15:54:48,319   adding 'moleculekit/projections/projection.py'
2024-06-17T15:54:48,320   adding 'moleculekit/projections/util.py'
2024-06-17T15:54:48,323   adding 'moleculekit/share/ALA.cif'
2024-06-17T15:54:48,324   adding 'moleculekit/share/backbone.cif'
2024-06-17T15:54:49,627   adding 'moleculekit/share/opm_sequences.json'
2024-06-17T15:54:49,712   adding 'moleculekit/share/atomselect/atomselect.json'
2024-06-17T15:54:49,717   adding 'moleculekit/share/pdb2pqr/residues/.gitkeep'
2024-06-17T15:54:49,718   adding 'moleculekit/share/pdb2pqr/residues/004.dat'
2024-06-17T15:54:49,720   adding 'moleculekit/share/pdb2pqr/residues/004.xml'
2024-06-17T15:54:49,721   adding 'moleculekit/share/pdb2pqr/residues/03Y.dat'
2024-06-17T15:54:49,722   adding 'moleculekit/share/pdb2pqr/residues/03Y.xml'
2024-06-17T15:54:49,723   adding 'moleculekit/share/pdb2pqr/residues/0A1.dat'
2024-06-17T15:54:49,725   adding 'moleculekit/share/pdb2pqr/residues/0A1.xml'
2024-06-17T15:54:49,726   adding 'moleculekit/share/pdb2pqr/residues/0AF.dat'
2024-06-17T15:54:49,728   adding 'moleculekit/share/pdb2pqr/residues/0AF.xml'
2024-06-17T15:54:49,729   adding 'moleculekit/share/pdb2pqr/residues/0BN.dat'
2024-06-17T15:54:49,730   adding 'moleculekit/share/pdb2pqr/residues/0BN.xml'
2024-06-17T15:54:49,732   adding 'moleculekit/share/pdb2pqr/residues/1MH.dat'
2024-06-17T15:54:49,733   adding 'moleculekit/share/pdb2pqr/residues/1MH.xml'
2024-06-17T15:54:49,734   adding 'moleculekit/share/pdb2pqr/residues/2AS.dat'
2024-06-17T15:54:49,736   adding 'moleculekit/share/pdb2pqr/residues/2AS.xml'
2024-06-17T15:54:49,737   adding 'moleculekit/share/pdb2pqr/residues/2GX.dat'
2024-06-17T15:54:49,739   adding 'moleculekit/share/pdb2pqr/residues/2GX.xml'
2024-06-17T15:54:49,740   adding 'moleculekit/share/pdb2pqr/residues/2ML.dat'
2024-06-17T15:54:49,742   adding 'moleculekit/share/pdb2pqr/residues/2ML.xml'
2024-06-17T15:54:49,743   adding 'moleculekit/share/pdb2pqr/residues/2MR.dat'
2024-06-17T15:54:49,745   adding 'moleculekit/share/pdb2pqr/residues/2MR.xml'
2024-06-17T15:54:49,746   adding 'moleculekit/share/pdb2pqr/residues/4IN.dat'
2024-06-17T15:54:49,748   adding 'moleculekit/share/pdb2pqr/residues/4IN.xml'
2024-06-17T15:54:49,749   adding 'moleculekit/share/pdb2pqr/residues/4PH.dat'
2024-06-17T15:54:49,751   adding 'moleculekit/share/pdb2pqr/residues/4PH.xml'
2024-06-17T15:54:49,752   adding 'moleculekit/share/pdb2pqr/residues/4PQ.dat'
2024-06-17T15:54:49,753   adding 'moleculekit/share/pdb2pqr/residues/4PQ.xml'
2024-06-17T15:54:49,755   adding 'moleculekit/share/pdb2pqr/residues/5JP.dat'
2024-06-17T15:54:49,756   adding 'moleculekit/share/pdb2pqr/residues/5JP.xml'
2024-06-17T15:54:49,758   adding 'moleculekit/share/pdb2pqr/residues/AA4.dat'
2024-06-17T15:54:49,760   adding 'moleculekit/share/pdb2pqr/residues/AA4.xml'
2024-06-17T15:54:49,761   adding 'moleculekit/share/pdb2pqr/residues/ABA.dat'
2024-06-17T15:54:49,763   adding 'moleculekit/share/pdb2pqr/residues/ABA.xml'
2024-06-17T15:54:49,764   adding 'moleculekit/share/pdb2pqr/residues/AHP.dat'
2024-06-17T15:54:49,765   adding 'moleculekit/share/pdb2pqr/residues/AHP.xml'
2024-06-17T15:54:49,766   adding 'moleculekit/share/pdb2pqr/residues/ALC.dat'
2024-06-17T15:54:49,768   adding 'moleculekit/share/pdb2pqr/residues/ALC.xml'
2024-06-17T15:54:49,769   adding 'moleculekit/share/pdb2pqr/residues/ALN.dat'
2024-06-17T15:54:49,770   adding 'moleculekit/share/pdb2pqr/residues/ALN.xml'
2024-06-17T15:54:49,772   adding 'moleculekit/share/pdb2pqr/residues/ALY.dat'
2024-06-17T15:54:49,773   adding 'moleculekit/share/pdb2pqr/residues/ALY.xml'
2024-06-17T15:54:49,774   adding 'moleculekit/share/pdb2pqr/residues/APD.dat'
2024-06-17T15:54:49,776   adding 'moleculekit/share/pdb2pqr/residues/APD.xml'
2024-06-17T15:54:49,777   adding 'moleculekit/share/pdb2pqr/residues/BB8.dat'
2024-06-17T15:54:49,778   adding 'moleculekit/share/pdb2pqr/residues/BB8.xml'
2024-06-17T15:54:49,780   adding 'moleculekit/share/pdb2pqr/residues/BCS.dat'
2024-06-17T15:54:49,781   adding 'moleculekit/share/pdb2pqr/residues/BCS.xml'
2024-06-17T15:54:49,782   adding 'moleculekit/share/pdb2pqr/residues/BTK.dat'
2024-06-17T15:54:49,784   adding 'moleculekit/share/pdb2pqr/residues/BTK.xml'
2024-06-17T15:54:49,785   adding 'moleculekit/share/pdb2pqr/residues/CCS.dat'
2024-06-17T15:54:49,786   adding 'moleculekit/share/pdb2pqr/residues/CCS.xml'
2024-06-17T15:54:49,788   adding 'moleculekit/share/pdb2pqr/residues/CGU.dat'
2024-06-17T15:54:49,793   adding 'moleculekit/share/pdb2pqr/residues/CGU.xml'
2024-06-17T15:54:49,795   adding 'moleculekit/share/pdb2pqr/residues/CSA.dat'
2024-06-17T15:54:49,796   adding 'moleculekit/share/pdb2pqr/residues/CSA.xml'
2024-06-17T15:54:49,798   adding 'moleculekit/share/pdb2pqr/residues/CSO.dat'
2024-06-17T15:54:49,799   adding 'moleculekit/share/pdb2pqr/residues/CSO.xml'
2024-06-17T15:54:49,800   adding 'moleculekit/share/pdb2pqr/residues/CSP.dat'
2024-06-17T15:54:49,802   adding 'moleculekit/share/pdb2pqr/residues/CSP.xml'
2024-06-17T15:54:49,803   adding 'moleculekit/share/pdb2pqr/residues/CSS.dat'
2024-06-17T15:54:49,804   adding 'moleculekit/share/pdb2pqr/residues/CSS.xml'
2024-06-17T15:54:49,805   adding 'moleculekit/share/pdb2pqr/residues/D4P.dat'
2024-06-17T15:54:49,807   adding 'moleculekit/share/pdb2pqr/residues/D4P.xml'
2024-06-17T15:54:49,808   adding 'moleculekit/share/pdb2pqr/residues/DA2.dat'
2024-06-17T15:54:49,810   adding 'moleculekit/share/pdb2pqr/residues/DA2.xml'
2024-06-17T15:54:49,811   adding 'moleculekit/share/pdb2pqr/residues/DAB.dat'
2024-06-17T15:54:49,812   adding 'moleculekit/share/pdb2pqr/residues/DAB.xml'
2024-06-17T15:54:49,813   adding 'moleculekit/share/pdb2pqr/residues/DAH.dat'
2024-06-17T15:54:49,815   adding 'moleculekit/share/pdb2pqr/residues/DAH.xml'
2024-06-17T15:54:49,816   adding 'moleculekit/share/pdb2pqr/residues/DPP.dat'
2024-06-17T15:54:49,817   adding 'moleculekit/share/pdb2pqr/residues/DPP.xml'
2024-06-17T15:54:49,818   adding 'moleculekit/share/pdb2pqr/residues/ESC.dat'
2024-06-17T15:54:49,820   adding 'moleculekit/share/pdb2pqr/residues/ESC.xml'
2024-06-17T15:54:49,821   adding 'moleculekit/share/pdb2pqr/residues/FGL.dat'
2024-06-17T15:54:49,822   adding 'moleculekit/share/pdb2pqr/residues/FGL.xml'
2024-06-17T15:54:49,824   adding 'moleculekit/share/pdb2pqr/residues/GHG.dat'
2024-06-17T15:54:49,825   adding 'moleculekit/share/pdb2pqr/residues/GHG.xml'
2024-06-17T15:54:49,827   adding 'moleculekit/share/pdb2pqr/residues/GME.dat'
2024-06-17T15:54:49,828   adding 'moleculekit/share/pdb2pqr/residues/GME.xml'
2024-06-17T15:54:49,829   adding 'moleculekit/share/pdb2pqr/residues/GNC.dat'
2024-06-17T15:54:49,831   adding 'moleculekit/share/pdb2pqr/residues/GNC.xml'
2024-06-17T15:54:49,832   adding 'moleculekit/share/pdb2pqr/residues/HHK.dat'
2024-06-17T15:54:49,834   adding 'moleculekit/share/pdb2pqr/residues/HHK.xml'
2024-06-17T15:54:49,835   adding 'moleculekit/share/pdb2pqr/residues/HLU.dat'
2024-06-17T15:54:49,836   adding 'moleculekit/share/pdb2pqr/residues/HLU.xml'
2024-06-17T15:54:49,838   adding 'moleculekit/share/pdb2pqr/residues/HLX.dat'
2024-06-17T15:54:49,839   adding 'moleculekit/share/pdb2pqr/residues/HLX.xml'
2024-06-17T15:54:49,841   adding 'moleculekit/share/pdb2pqr/residues/HOX.dat'
2024-06-17T15:54:49,842   adding 'moleculekit/share/pdb2pqr/residues/HOX.xml'
2024-06-17T15:54:49,843   adding 'moleculekit/share/pdb2pqr/residues/HPE.dat'
2024-06-17T15:54:49,845   adding 'moleculekit/share/pdb2pqr/residues/HPE.xml'
2024-06-17T15:54:49,846   adding 'moleculekit/share/pdb2pqr/residues/HQA.dat'
2024-06-17T15:54:49,848   adding 'moleculekit/share/pdb2pqr/residues/HQA.xml'
2024-06-17T15:54:49,849   adding 'moleculekit/share/pdb2pqr/residues/HTR.dat'
2024-06-17T15:54:49,850   adding 'moleculekit/share/pdb2pqr/residues/HTR.xml'
2024-06-17T15:54:49,851   adding 'moleculekit/share/pdb2pqr/residues/HYP.dat'
2024-06-17T15:54:49,853   adding 'moleculekit/share/pdb2pqr/residues/HYP.xml'
2024-06-17T15:54:49,854   adding 'moleculekit/share/pdb2pqr/residues/I2M.dat'
2024-06-17T15:54:49,855   adding 'moleculekit/share/pdb2pqr/residues/I2M.xml'
2024-06-17T15:54:49,857   adding 'moleculekit/share/pdb2pqr/residues/IGL.dat'
2024-06-17T15:54:49,858   adding 'moleculekit/share/pdb2pqr/residues/IGL.xml'
2024-06-17T15:54:49,859   adding 'moleculekit/share/pdb2pqr/residues/IIL.dat'
2024-06-17T15:54:49,861   adding 'moleculekit/share/pdb2pqr/residues/IIL.xml'
2024-06-17T15:54:49,862   adding 'moleculekit/share/pdb2pqr/residues/IML.dat'
2024-06-17T15:54:49,863   adding 'moleculekit/share/pdb2pqr/residues/IML.xml'
2024-06-17T15:54:49,865   adding 'moleculekit/share/pdb2pqr/residues/KYN.dat'
2024-06-17T15:54:49,866   adding 'moleculekit/share/pdb2pqr/residues/KYN.xml'
2024-06-17T15:54:49,867   adding 'moleculekit/share/pdb2pqr/residues/LME.dat'
2024-06-17T15:54:49,869   adding 'moleculekit/share/pdb2pqr/residues/LME.xml'
2024-06-17T15:54:49,870   adding 'moleculekit/share/pdb2pqr/residues/LMQ.dat'
2024-06-17T15:54:49,871   adding 'moleculekit/share/pdb2pqr/residues/LMQ.xml'
2024-06-17T15:54:49,873   adding 'moleculekit/share/pdb2pqr/residues/LYZ.dat'
2024-06-17T15:54:49,874   adding 'moleculekit/share/pdb2pqr/residues/LYZ.xml'
2024-06-17T15:54:49,875   adding 'moleculekit/share/pdb2pqr/residues/M3L.dat'
2024-06-17T15:54:49,877   adding 'moleculekit/share/pdb2pqr/residues/M3L.xml'
2024-06-17T15:54:49,878   adding 'moleculekit/share/pdb2pqr/residues/ME0.dat'
2024-06-17T15:54:49,879   adding 'moleculekit/share/pdb2pqr/residues/ME0.xml'
2024-06-17T15:54:49,881   adding 'moleculekit/share/pdb2pqr/residues/MEA.dat'
2024-06-17T15:54:49,882   adding 'moleculekit/share/pdb2pqr/residues/MEA.xml'
2024-06-17T15:54:49,883   adding 'moleculekit/share/pdb2pqr/residues/MEN.dat'
2024-06-17T15:54:49,885   adding 'moleculekit/share/pdb2pqr/residues/MEN.xml'
2024-06-17T15:54:49,886   adding 'moleculekit/share/pdb2pqr/residues/MEQ.dat'
2024-06-17T15:54:49,888   adding 'moleculekit/share/pdb2pqr/residues/MEQ.xml'
2024-06-17T15:54:49,889   adding 'moleculekit/share/pdb2pqr/residues/MLE.dat'
2024-06-17T15:54:49,891   adding 'moleculekit/share/pdb2pqr/residues/MLE.xml'
2024-06-17T15:54:49,892   adding 'moleculekit/share/pdb2pqr/residues/MLY.dat'
2024-06-17T15:54:49,893   adding 'moleculekit/share/pdb2pqr/residues/MLY.xml'
2024-06-17T15:54:49,894   adding 'moleculekit/share/pdb2pqr/residues/MLZ.dat'
2024-06-17T15:54:49,895   adding 'moleculekit/share/pdb2pqr/residues/MLZ.xml'
2024-06-17T15:54:49,897   adding 'moleculekit/share/pdb2pqr/residues/MME.dat'
2024-06-17T15:54:49,898   adding 'moleculekit/share/pdb2pqr/residues/MME.xml'
2024-06-17T15:54:49,899   adding 'moleculekit/share/pdb2pqr/residues/MMO.dat'
2024-06-17T15:54:49,901   adding 'moleculekit/share/pdb2pqr/residues/MMO.xml'
2024-06-17T15:54:49,902   adding 'moleculekit/share/pdb2pqr/residues/MVA.dat'
2024-06-17T15:54:49,903   adding 'moleculekit/share/pdb2pqr/residues/MVA.xml'
2024-06-17T15:54:49,905   adding 'moleculekit/share/pdb2pqr/residues/NAL.dat'
2024-06-17T15:54:49,906   adding 'moleculekit/share/pdb2pqr/residues/NAL.xml'
2024-06-17T15:54:49,907   adding 'moleculekit/share/pdb2pqr/residues/NCY.dat'
2024-06-17T15:54:49,909   adding 'moleculekit/share/pdb2pqr/residues/NCY.xml'
2024-06-17T15:54:49,911   adding 'moleculekit/share/pdb2pqr/residues/NLE.dat'
2024-06-17T15:54:49,912   adding 'moleculekit/share/pdb2pqr/residues/NLE.xml'
2024-06-17T15:54:49,913   adding 'moleculekit/share/pdb2pqr/residues/NVA.dat'
2024-06-17T15:54:49,915   adding 'moleculekit/share/pdb2pqr/residues/NVA.xml'
2024-06-17T15:54:49,916   adding 'moleculekit/share/pdb2pqr/residues/NZC.dat'
2024-06-17T15:54:49,918   adding 'moleculekit/share/pdb2pqr/residues/NZC.xml'
2024-06-17T15:54:49,919   adding 'moleculekit/share/pdb2pqr/residues/OCY.dat'
2024-06-17T15:54:49,921   adding 'moleculekit/share/pdb2pqr/residues/OCY.xml'
2024-06-17T15:54:49,923   adding 'moleculekit/share/pdb2pqr/residues/OMX.dat'
2024-06-17T15:54:49,924   adding 'moleculekit/share/pdb2pqr/residues/OMX.xml'
2024-06-17T15:54:49,926   adding 'moleculekit/share/pdb2pqr/residues/ONL.dat'
2024-06-17T15:54:49,927   adding 'moleculekit/share/pdb2pqr/residues/ONL.xml'
2024-06-17T15:54:49,928   adding 'moleculekit/share/pdb2pqr/residues/ORM.dat'
2024-06-17T15:54:49,929   adding 'moleculekit/share/pdb2pqr/residues/ORM.xml'
2024-06-17T15:54:49,930   adding 'moleculekit/share/pdb2pqr/residues/P1L.dat'
2024-06-17T15:54:49,932   adding 'moleculekit/share/pdb2pqr/residues/P1L.xml'
2024-06-17T15:54:49,933   adding 'moleculekit/share/pdb2pqr/residues/PCA.dat'
2024-06-17T15:54:49,935   adding 'moleculekit/share/pdb2pqr/residues/PCA.xml'
2024-06-17T15:54:49,936   adding 'moleculekit/share/pdb2pqr/residues/PRK.dat'
2024-06-17T15:54:49,937   adding 'moleculekit/share/pdb2pqr/residues/PRK.xml'
2024-06-17T15:54:49,939   adding 'moleculekit/share/pdb2pqr/residues/PTR.dat'
2024-06-17T15:54:49,940   adding 'moleculekit/share/pdb2pqr/residues/PTR.xml'
2024-06-17T15:54:49,942   adding 'moleculekit/share/pdb2pqr/residues/SEP.dat'
2024-06-17T15:54:49,943   adding 'moleculekit/share/pdb2pqr/residues/SEP.xml'
2024-06-17T15:54:49,945   adding 'moleculekit/share/pdb2pqr/residues/TPO.dat'
2024-06-17T15:54:49,946   adding 'moleculekit/share/pdb2pqr/residues/TPO.xml'
2024-06-17T15:54:49,948   adding 'moleculekit/share/pdb2pqr/residues/TRO.dat'
2024-06-17T15:54:49,950   adding 'moleculekit/share/pdb2pqr/residues/TRO.xml'
2024-06-17T15:54:49,951   adding 'moleculekit/share/pdb2pqr/residues/TY2.dat'
2024-06-17T15:54:49,953   adding 'moleculekit/share/pdb2pqr/residues/TY2.xml'
2024-06-17T15:54:49,954   adding 'moleculekit/share/pdb2pqr/residues/TYQ.dat'
2024-06-17T15:54:49,956   adding 'moleculekit/share/pdb2pqr/residues/TYQ.xml'
2024-06-17T15:54:49,957   adding 'moleculekit/share/pdb2pqr/residues/YCM.dat'
2024-06-17T15:54:49,958   adding 'moleculekit/share/pdb2pqr/residues/YCM.xml'
2024-06-17T15:54:49,959   adding 'moleculekit/share/pdb2pqr/residues/YNM.dat'
2024-06-17T15:54:49,961   adding 'moleculekit/share/pdb2pqr/residues/YNM.xml'
2024-06-17T15:54:49,963   adding 'moleculekit/smallmol/__init__.py'
2024-06-17T15:54:49,968   adding 'moleculekit/smallmol/smallmol.py'
2024-06-17T15:54:49,970   adding 'moleculekit/smallmol/smallmolcdp.py'
2024-06-17T15:54:49,972   adding 'moleculekit/smallmol/smallmollib.py'
2024-06-17T15:54:49,974   adding 'moleculekit/smallmol/test_smallmol.py'
2024-06-17T15:54:49,976   adding 'moleculekit/smallmol/test_smallmollib.py'
2024-06-17T15:54:49,978   adding 'moleculekit/smallmol/util.py'
2024-06-17T15:54:49,980   adding 'moleculekit/smallmol/tools/__init__.py'
2024-06-17T15:54:49,982   adding 'moleculekit/smallmol/tools/clustering.py'
2024-06-17T15:54:49,984   adding 'moleculekit/smallmol/tools/restrainedembed.py'
2024-06-17T15:54:49,986   adding 'moleculekit/smallmol/tools/test_tools.py'
2024-06-17T15:54:50,075   adding 'moleculekit/tmalign/tmalign_util.cpp'
2024-06-17T15:54:50,084   adding 'moleculekit/tmalign/tmalign_util.pyx'
2024-06-17T15:54:50,085   adding 'moleculekit/tmalign/tmalignlib.pxd'
2024-06-17T15:54:50,087   adding 'moleculekit/tmalign/include/TMAlign.h'
2024-06-17T15:54:50,104   adding 'moleculekit/tmalign/src/TMAlign.cpp'
2024-06-17T15:54:50,108   adding 'moleculekit/tools/__init__.py'
2024-06-17T15:54:50,111   adding 'moleculekit/tools/atomtyper.py'
2024-06-17T15:54:50,113   adding 'moleculekit/tools/autosegment.py'
2024-06-17T15:54:50,115   adding 'moleculekit/tools/crystalpacking.py'
2024-06-17T15:54:50,119   adding 'moleculekit/tools/detect.py'
2024-06-17T15:54:50,121   adding 'moleculekit/tools/docking.py'
2024-06-17T15:54:50,123   adding 'moleculekit/tools/graphalignment.py'
2024-06-17T15:54:50,124   adding 'moleculekit/tools/hhblitsprofile.py'
2024-06-17T15:54:50,126   adding 'moleculekit/tools/modelling.py'
2024-06-17T15:54:50,128   adding 'moleculekit/tools/moleculechecks.py'
2024-06-17T15:54:50,134   adding 'moleculekit/tools/preparation.py'
2024-06-17T15:54:50,137   adding 'moleculekit/tools/preparation_customres.py'
2024-06-17T15:54:50,139   adding 'moleculekit/tools/sequencestructuralalignment.py'
2024-06-17T15:54:50,142   adding 'moleculekit/tools/voxeldescriptors.py'
2024-06-17T15:54:50,144   adding 'moleculekit/tools/obabel_tools/__init__.py'
2024-06-17T15:54:50,146   adding 'moleculekit/tools/obabel_tools/obabel_cli.py'
2024-06-17T15:54:50,237   adding 'moleculekit/wrapping/wrapping.cpp'
2024-06-17T15:54:50,246   adding 'moleculekit/wrapping/wrapping.pyx'
2024-06-17T15:54:50,463   adding 'moleculekit-1.8.34.dist-info/LICENSE'
2024-06-17T15:54:50,465   adding 'moleculekit-1.8.34.dist-info/METADATA'
2024-06-17T15:54:50,466   adding 'moleculekit-1.8.34.dist-info/WHEEL'
2024-06-17T15:54:50,467   adding 'moleculekit-1.8.34.dist-info/top_level.txt'
2024-06-17T15:54:50,472   adding 'moleculekit-1.8.34.dist-info/RECORD'
2024-06-17T15:54:51,174   removing build/bdist.linux-armv7l/wheel
2024-06-17T15:54:51,563   Building wheel for moleculekit (pyproject.toml): finished with status 'done'
2024-06-17T15:54:51,894   Created wheel for moleculekit: filename=moleculekit-1.8.34-cp311-cp311-linux_armv7l.whl size=15274350 sha256=942c98d7f1683d7846c9afa7242cfc6ce8754a90853a7129c5eae6f1081d1d0c
2024-06-17T15:54:51,895   Stored in directory: /tmp/pip-ephem-wheel-cache-f5l6uzrn/wheels/0f/f2/64/b7f5f950c940b9ee2ecad048fbbad983a2e6d7f4643bcef3ba
2024-06-17T15:54:51,921 Successfully built moleculekit
2024-06-17T15:54:52,472 Removed build tracker: '/tmp/pip-build-tracker-d12q7u5s'