2024-06-19T11:29:14,355 Created temporary directory: /tmp/pip-build-tracker-01ndojv1 2024-06-19T11:29:14,357 Initialized build tracking at /tmp/pip-build-tracker-01ndojv1 2024-06-19T11:29:14,357 Created build tracker: /tmp/pip-build-tracker-01ndojv1 2024-06-19T11:29:14,357 Entered build tracker: /tmp/pip-build-tracker-01ndojv1 2024-06-19T11:29:14,358 Created temporary directory: /tmp/pip-wheel-xw_mlhw0 2024-06-19T11:29:14,362 Created temporary directory: /tmp/pip-ephem-wheel-cache-yjnj3egx 2024-06-19T11:29:14,385 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2024-06-19T11:29:14,389 2 location(s) to search for versions of pgenlib: 2024-06-19T11:29:14,389 * https://pypi.org/simple/pgenlib/ 2024-06-19T11:29:14,389 * https://www.piwheels.org/simple/pgenlib/ 2024-06-19T11:29:14,389 Fetching project page and analyzing links: https://pypi.org/simple/pgenlib/ 2024-06-19T11:29:14,390 Getting page https://pypi.org/simple/pgenlib/ 2024-06-19T11:29:14,392 Found index url https://pypi.org/simple/ 2024-06-19T11:29:14,446 Fetched page https://pypi.org/simple/pgenlib/ as application/vnd.pypi.simple.v1+json 2024-06-19T11:29:14,462 Found link https://files.pythonhosted.org/packages/d9/cc/f3bbaa8da897e9a04e1a885183a0c533ba563bb3a1dbfba6680704473336/Pgenlib-0.81.1.tar.gz (from https://pypi.org/simple/pgenlib/) (requires-python:>=3.5), version: 0.81.1 2024-06-19T11:29:14,462 Skipping link: No binaries permitted for pgenlib: https://files.pythonhosted.org/packages/22/06/d83bcf26ea2212baccc88b3771c78dce0eff643a1293aa3f8993c242fe02/Pgenlib-0.81.2-cp37-cp37m-macosx_10_13_x86_64.whl (from https://pypi.org/simple/pgenlib/) (requires-python:>=3.5) 2024-06-19T11:29:14,463 Found link https://files.pythonhosted.org/packages/6d/f7/c286a64ec213ea42bfa67b20ce1271b0b8699ac3880854657f8ed1620759/Pgenlib-0.81.2.tar.gz (from https://pypi.org/simple/pgenlib/) (requires-python:>=3.5), version: 0.81.2 2024-06-19T11:29:14,464 Found link https://files.pythonhosted.org/packages/38/09/74ec09b0c9ddde6a3562898507b99b47adde5350248f2899b59edcc082b0/Pgenlib-0.81.3.tar.gz (from https://pypi.org/simple/pgenlib/) (requires-python:>=3.5), version: 0.81.3 2024-06-19T11:29:14,464 Found link https://files.pythonhosted.org/packages/29/d3/311512e956d1bc898cd6020e15691e2778e1bf3a1c2e01eadbb6031d8bd5/Pgenlib-0.82.0.tar.gz (from https://pypi.org/simple/pgenlib/) (requires-python:>=3.5), version: 0.82.0 2024-06-19T11:29:14,465 Skipping link: No binaries permitted for pgenlib: https://files.pythonhosted.org/packages/2b/91/1d7b72b61c624763fc29c3e54df394bc611080a3dc2176af2332257e8fac/Pgenlib-0.82.1-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/pgenlib/) (requires-python:>=3.5) 2024-06-19T11:29:14,465 Skipping link: No binaries permitted for pgenlib: https://files.pythonhosted.org/packages/30/d1/166d130225f03033df8ca688ef54dca200fb3de3419f0edc914afd21a3a7/Pgenlib-0.82.1-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/pgenlib/) (requires-python:>=3.5) 2024-06-19T11:29:14,465 Skipping link: No binaries permitted for pgenlib: https://files.pythonhosted.org/packages/be/d5/85dc2412def8644cccfafe6722e7d1c5411c9725366156eef4aec843ba95/Pgenlib-0.82.1-cp36-cp36m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/pgenlib/) (requires-python:>=3.5) 2024-06-19T11:29:14,465 Skipping link: No binaries permitted for pgenlib: https://files.pythonhosted.org/packages/a1/74/ade2137ac2eee449bfa959f5808cc6d1bdc6cec4cd9b4fabcd416246a889/Pgenlib-0.82.1-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/pgenlib/) (requires-python:>=3.5) 2024-06-19T11:29:14,465 Skipping link: No binaries permitted for pgenlib: https://files.pythonhosted.org/packages/9a/65/79600073fc41faaa2b008b1bedf9233125aeaad404a973e563810268a626/Pgenlib-0.82.1-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/pgenlib/) (requires-python:>=3.5) 2024-06-19T11:29:14,466 Skipping link: No binaries permitted for pgenlib: https://files.pythonhosted.org/packages/29/20/876e704d95b3ca26e7a554532385d52f2133cd99d2f132a29fb16062cb4d/Pgenlib-0.82.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/pgenlib/) (requires-python:>=3.5) 2024-06-19T11:29:14,466 Skipping link: No binaries permitted for pgenlib: https://files.pythonhosted.org/packages/b5/32/8dbf9cb1a3a3a6950deab99e0515a753273396ef1770b5d2491e1f8eaba9/Pgenlib-0.82.1-pp37-pypy37_pp73-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/pgenlib/) (requires-python:>=3.5) 2024-06-19T11:29:14,466 Skipping link: No binaries permitted for pgenlib: https://files.pythonhosted.org/packages/fc/24/2e6994141f63fd6c129b0bd0bbc9ef8df91e98b171a5ae0a5aeb7a01532c/Pgenlib-0.82.1-pp38-pypy38_pp73-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/pgenlib/) (requires-python:>=3.5) 2024-06-19T11:29:14,466 Skipping link: No binaries permitted for pgenlib: https://files.pythonhosted.org/packages/54/8e/3a2eef4571d6d2c8604a3810c3e092c9e145839934dde6c91ecf4be63be8/Pgenlib-0.82.1-pp39-pypy39_pp73-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/pgenlib/) (requires-python:>=3.5) 2024-06-19T11:29:14,467 Found link https://files.pythonhosted.org/packages/9b/d1/73c8eb879691b5ef443cf3c26e801590a7eac657264f80538c7541266fa8/Pgenlib-0.82.1.tar.gz (from https://pypi.org/simple/pgenlib/) (requires-python:>=3.5), version: 0.82.1 2024-06-19T11:29:14,467 Skipping link: No binaries permitted for pgenlib: https://files.pythonhosted.org/packages/95/0a/86ce9fc2291a83b63817ac43b8f2924af9c02746b4f20c44142ce9f8a4ce/Pgenlib-0.83.0-cp310-cp310-macosx_13_0_arm64.whl (from https://pypi.org/simple/pgenlib/) (requires-python:>=3.5) 2024-06-19T11:29:14,467 Skipping link: No binaries permitted for pgenlib: https://files.pythonhosted.org/packages/54/73/924728769d9bd1e738190588c1ac1c2fc53d65641565c013ac1d79fe8403/Pgenlib-0.83.0-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/pgenlib/) (requires-python:>=3.5) 2024-06-19T11:29:14,467 Skipping link: No binaries permitted for pgenlib: https://files.pythonhosted.org/packages/3b/22/29e510423558b22e98374496ef7c8b178c5f4d47f6e9c1fe4999c6ee8761/Pgenlib-0.83.0-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/pgenlib/) (requires-python:>=3.5) 2024-06-19T11:29:14,468 Skipping link: No binaries permitted for pgenlib: https://files.pythonhosted.org/packages/7c/a9/5987776baf730f0f8e8b44b7c358f8b2b44cb24f9fa938b9f6dcb8724f69/Pgenlib-0.83.0-cp36-cp36m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/pgenlib/) (requires-python:>=3.5) 2024-06-19T11:29:14,468 Skipping link: No binaries permitted for pgenlib: https://files.pythonhosted.org/packages/88/64/2df132fbea4b3aad80aab161c90e9f24e5d494917605b1f01f522950d07e/Pgenlib-0.83.0-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/pgenlib/) (requires-python:>=3.5) 2024-06-19T11:29:14,468 Skipping link: No binaries permitted for pgenlib: https://files.pythonhosted.org/packages/02/4e/df2808d3f87f77419e0abb68544f0f220c261a7eed6433c7150eff1fec49/Pgenlib-0.83.0-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/pgenlib/) (requires-python:>=3.5) 2024-06-19T11:29:14,468 Skipping link: No binaries permitted for pgenlib: https://files.pythonhosted.org/packages/c1/14/00aaf84a05ae9b25f51af36f285614e42c557860051fe16ef0860b03b3c6/Pgenlib-0.83.0-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/pgenlib/) (requires-python:>=3.5) 2024-06-19T11:29:14,468 Skipping link: No binaries permitted for pgenlib: https://files.pythonhosted.org/packages/b7/a8/832b27db6e563e46c40e59714a0adf09959d67d964feb5ef84b51f89a0b9/Pgenlib-0.83.0-pp37-pypy37_pp73-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/pgenlib/) (requires-python:>=3.5) 2024-06-19T11:29:14,469 Skipping link: No binaries permitted for pgenlib: https://files.pythonhosted.org/packages/5b/ba/ba9401daf559588f84aa8ff82b55ce1aac6339a69028a3b14748af74539f/Pgenlib-0.83.0-pp38-pypy38_pp73-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/pgenlib/) (requires-python:>=3.5) 2024-06-19T11:29:14,469 Skipping link: No binaries permitted for pgenlib: https://files.pythonhosted.org/packages/b6/d7/6cf098fd410209d749e41610daeb12b440ea603a45f787a49474461c6043/Pgenlib-0.83.0-pp39-pypy39_pp73-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/pgenlib/) (requires-python:>=3.5) 2024-06-19T11:29:14,469 Found link https://files.pythonhosted.org/packages/b5/f4/6cd16a7f543438c5910cec68bd5d49d231152753f3f53f4dda1322305522/Pgenlib-0.83.0.tar.gz (from https://pypi.org/simple/pgenlib/) (requires-python:>=3.5), version: 0.83.0 2024-06-19T11:29:14,470 Skipping link: No binaries permitted for pgenlib: https://files.pythonhosted.org/packages/16/24/5e5f3f751fc014e67c567073089e5ff22887c890ddcb33b2eee234b2ff66/Pgenlib-0.90.0-cp310-cp310-macosx_13_0_arm64.whl (from https://pypi.org/simple/pgenlib/) (requires-python:>=3.5) 2024-06-19T11:29:14,470 Skipping link: No binaries permitted for pgenlib: 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https://files.pythonhosted.org/packages/f3/b0/01e1c04e3fe156252d1ebb82f362da5642a128d72c5a67c481b26986d450/Pgenlib-0.90.0-pp37-pypy37_pp73-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/pgenlib/) (requires-python:>=3.5) 2024-06-19T11:29:14,471 Skipping link: No binaries permitted for pgenlib: https://files.pythonhosted.org/packages/05/cc/185166c604f18f1d60291fd0d407d6c02b26e712af8e39bfaabfe9be57ce/Pgenlib-0.90.0-pp38-pypy38_pp73-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/pgenlib/) (requires-python:>=3.5) 2024-06-19T11:29:14,471 Skipping link: No binaries permitted for pgenlib: https://files.pythonhosted.org/packages/45/60/dd584321eedc419f7b1aee92fc15110070714ca949ee012bf5dddffec6cf/Pgenlib-0.90.0-pp39-pypy39_pp73-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/pgenlib/) (requires-python:>=3.5) 2024-06-19T11:29:14,472 Found link https://files.pythonhosted.org/packages/dc/26/3150424408411a6f326db5b2f61a5accf900dfe3d287f4452e73d62b0b01/Pgenlib-0.90.0.tar.gz (from https://pypi.org/simple/pgenlib/) (requires-python:>=3.5), version: 0.90.0 2024-06-19T11:29:14,472 Skipping link: No binaries permitted for pgenlib: https://files.pythonhosted.org/packages/0a/24/eb4944605bf1ad5142466d268aac02ca2c1e57242511578ae521c3427e77/Pgenlib-0.90.1-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/pgenlib/) (requires-python:>=3.5) 2024-06-19T11:29:14,472 Skipping link: No binaries permitted for pgenlib: https://files.pythonhosted.org/packages/47/c5/b8acab2c2db8acbf153d4e1284236838d31c0f17df797f04f15686e5f15d/Pgenlib-0.90.1-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/pgenlib/) (requires-python:>=3.5) 2024-06-19T11:29:14,472 Skipping link: No binaries permitted for pgenlib: 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https://files.pythonhosted.org/packages/9b/16/4c75c8fe1b154d4b56b890e7298753f76105cfd65e1efcd0e6f0a1679906/Pgenlib-0.91.0-cp39-cp39-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/pgenlib/) (requires-python:>=3.5) 2024-06-19T11:29:14,480 Skipping link: No binaries permitted for pgenlib: https://files.pythonhosted.org/packages/46/02/9adc7272a6550c7bcff24bac5bd2a8f38889ba79567c7f82ac191535b912/Pgenlib-0.91.0-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/pgenlib/) (requires-python:>=3.5) 2024-06-19T11:29:14,480 Skipping link: No binaries permitted for pgenlib: https://files.pythonhosted.org/packages/d5/e4/07bc932deeb601238a5e9d22ac9e47bfabcc18c31c1cc2209499ba4c02f9/Pgenlib-0.91.0-pp310-pypy310_pp73-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/pgenlib/) (requires-python:>=3.5) 2024-06-19T11:29:14,480 Skipping link: No binaries permitted for pgenlib: https://files.pythonhosted.org/packages/75/f4/1a791fdbfeeb8fe0563b44255ab9a644e087aac2aa581d2d04604f21cfdb/Pgenlib-0.91.0-pp37-pypy37_pp73-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/pgenlib/) (requires-python:>=3.5) 2024-06-19T11:29:14,480 Skipping link: No binaries permitted for pgenlib: https://files.pythonhosted.org/packages/91/a1/94436e193733c5e454aa287ce0eec1796f8aeea2816514c33d8ee255cc87/Pgenlib-0.91.0-pp38-pypy38_pp73-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/pgenlib/) (requires-python:>=3.5) 2024-06-19T11:29:14,481 Skipping link: No binaries permitted for pgenlib: https://files.pythonhosted.org/packages/07/3f/1b12de81800fc4519deb2b674d88437bcf771d834bc46b46484f20da75f7/Pgenlib-0.91.0-pp39-pypy39_pp73-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/pgenlib/) (requires-python:>=3.5) 2024-06-19T11:29:14,481 Found link https://files.pythonhosted.org/packages/69/63/b12198e1394dfd4c8e0c79c9500d146aa716f10677a02ff97c0ec38a3d4c/pgenlib-0.91.0.tar.gz (from https://pypi.org/simple/pgenlib/) (requires-python:>=3.5), version: 0.91.0 2024-06-19T11:29:14,482 Fetching project page and analyzing links: https://www.piwheels.org/simple/pgenlib/ 2024-06-19T11:29:14,482 Getting page https://www.piwheels.org/simple/pgenlib/ 2024-06-19T11:29:14,483 Found index url https://www.piwheels.org/simple/ 2024-06-19T11:29:14,558 Fetched page https://www.piwheels.org/simple/pgenlib/ as text/html 2024-06-19T11:29:14,567 Skipping link: No binaries permitted for pgenlib: https://www.piwheels.org/simple/pgenlib/Pgenlib-0.91.0-cp311-cp311-linux_armv6l.whl#sha256=8f9600f0e86d953fb7d0e52dda5c1207dd7bd506f3877b36616115409bd9fbb2 (from https://www.piwheels.org/simple/pgenlib/) (requires-python:>=3.5) 2024-06-19T11:29:14,567 Skipping link: No binaries permitted for pgenlib: 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https://www.piwheels.org/simple/pgenlib/Pgenlib-0.82.0-cp311-cp311-linux_armv7l.whl#sha256=4da917a14038914fca7ee7cc073bbfac5f01312f9102fdb7bbd34291a05dca32 (from https://www.piwheels.org/simple/pgenlib/) (requires-python:>=3.5) 2024-06-19T11:29:14,571 Skipping link: No binaries permitted for pgenlib: https://www.piwheels.org/simple/pgenlib/Pgenlib-0.81.3-cp39-cp39-linux_armv6l.whl#sha256=5a7e6ce67f2000041a2e5d373924f58245f07fb04f09b9c5740c8554ff44d333 (from https://www.piwheels.org/simple/pgenlib/) (requires-python:>=3.5) 2024-06-19T11:29:14,571 Skipping link: No binaries permitted for pgenlib: https://www.piwheels.org/simple/pgenlib/Pgenlib-0.81.3-cp39-cp39-linux_armv7l.whl#sha256=5a7e6ce67f2000041a2e5d373924f58245f07fb04f09b9c5740c8554ff44d333 (from https://www.piwheels.org/simple/pgenlib/) (requires-python:>=3.5) 2024-06-19T11:29:14,572 Skipping link: No binaries permitted for pgenlib: https://www.piwheels.org/simple/pgenlib/Pgenlib-0.81.3-cp311-cp311-linux_armv6l.whl#sha256=d35941b198cb411716265233328d85e638faae97f31afeff3c50b56f287d8a88 (from https://www.piwheels.org/simple/pgenlib/) (requires-python:>=3.5) 2024-06-19T11:29:14,572 Skipping link: No binaries permitted for pgenlib: https://www.piwheels.org/simple/pgenlib/Pgenlib-0.81.3-cp311-cp311-linux_armv7l.whl#sha256=d35941b198cb411716265233328d85e638faae97f31afeff3c50b56f287d8a88 (from https://www.piwheels.org/simple/pgenlib/) (requires-python:>=3.5) 2024-06-19T11:29:14,572 Skipping link: No binaries permitted for pgenlib: https://www.piwheels.org/simple/pgenlib/Pgenlib-0.81.2-cp39-cp39-linux_armv6l.whl#sha256=2e0ad339664cbc60a4ae0b3a935afcf56d3e1a344387d8327ae50b03dce0d852 (from https://www.piwheels.org/simple/pgenlib/) (requires-python:>=3.5) 2024-06-19T11:29:14,572 Skipping link: No binaries permitted for pgenlib: https://www.piwheels.org/simple/pgenlib/Pgenlib-0.81.2-cp39-cp39-linux_armv7l.whl#sha256=2e0ad339664cbc60a4ae0b3a935afcf56d3e1a344387d8327ae50b03dce0d852 (from https://www.piwheels.org/simple/pgenlib/) (requires-python:>=3.5) 2024-06-19T11:29:14,572 Skipping link: No binaries permitted for pgenlib: https://www.piwheels.org/simple/pgenlib/Pgenlib-0.81.1-cp39-cp39-linux_armv6l.whl#sha256=7fe4ecefc0464d30dc029a926937523d919f28fa0320e6522fa229764a168909 (from https://www.piwheels.org/simple/pgenlib/) (requires-python:>=3.5) 2024-06-19T11:29:14,573 Skipping link: No binaries permitted for pgenlib: https://www.piwheels.org/simple/pgenlib/Pgenlib-0.81.1-cp39-cp39-linux_armv7l.whl#sha256=7fe4ecefc0464d30dc029a926937523d919f28fa0320e6522fa229764a168909 (from https://www.piwheels.org/simple/pgenlib/) (requires-python:>=3.5) 2024-06-19T11:29:14,573 Skipping link: not a file: https://www.piwheels.org/simple/pgenlib/ 2024-06-19T11:29:14,573 Skipping link: not a file: https://pypi.org/simple/pgenlib/ 2024-06-19T11:29:14,590 Given no hashes to check 1 links for project 'pgenlib': discarding no candidates 2024-06-19T11:29:14,606 Collecting pgenlib==0.91.0 2024-06-19T11:29:14,608 Created temporary directory: /tmp/pip-unpack-egr7n5c_ 2024-06-19T11:29:14,652 Downloading pgenlib-0.91.0.tar.gz (1.3 MB) 2024-06-19T11:29:15,421 Added pgenlib==0.91.0 from https://files.pythonhosted.org/packages/69/63/b12198e1394dfd4c8e0c79c9500d146aa716f10677a02ff97c0ec38a3d4c/pgenlib-0.91.0.tar.gz to build tracker '/tmp/pip-build-tracker-01ndojv1' 2024-06-19T11:29:15,432 Created temporary directory: /tmp/pip-build-env-dgfm29g5 2024-06-19T11:29:15,442 Installing build dependencies: started 2024-06-19T11:29:15,443 Running command pip subprocess to install build dependencies 2024-06-19T11:29:16,606 Using pip 24.0 from /usr/local/lib/python3.9/dist-packages/pip (python 3.9) 2024-06-19T11:29:17,127 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2024-06-19T11:29:17,129 Ignoring oldest-supported-numpy: markers 'python_version < "3.9"' don't match your environment 2024-06-19T11:29:17,491 Collecting wheel 2024-06-19T11:29:17,509 Using cached https://www.piwheels.org/simple/wheel/wheel-0.43.0-py3-none-any.whl (65 kB) 2024-06-19T11:29:18,867 Collecting setuptools 2024-06-19T11:29:18,888 Using cached https://www.piwheels.org/simple/setuptools/setuptools-70.0.0-py3-none-any.whl (863 kB) 2024-06-19T11:29:20,287 Collecting Cython>=0.29.21 2024-06-19T11:29:20,303 Using cached https://www.piwheels.org/simple/cython/Cython-3.0.10-cp39-cp39-linux_armv7l.whl (10.7 MB) 2024-06-19T11:29:21,690 Collecting numpy>=2.0.0 2024-06-19T11:29:21,708 Using cached https://www.piwheels.org/simple/numpy/numpy-2.0.0-cp39-cp39-linux_armv7l.whl (5.8 MB) 2024-06-19T11:29:23,687 Installing collected packages: wheel, setuptools, numpy, Cython 2024-06-19T11:29:23,906 Creating /tmp/pip-build-env-dgfm29g5/overlay/bin 2024-06-19T11:29:23,908 changing mode of /tmp/pip-build-env-dgfm29g5/overlay/bin/wheel to 755 2024-06-19T11:29:34,226 changing mode of /tmp/pip-build-env-dgfm29g5/overlay/bin/f2py to 755 2024-06-19T11:29:34,229 changing mode of /tmp/pip-build-env-dgfm29g5/overlay/bin/numpy-config to 755 2024-06-19T11:29:38,077 changing mode of /tmp/pip-build-env-dgfm29g5/overlay/bin/cygdb to 755 2024-06-19T11:29:38,080 changing mode of /tmp/pip-build-env-dgfm29g5/overlay/bin/cython to 755 2024-06-19T11:29:38,082 changing mode of /tmp/pip-build-env-dgfm29g5/overlay/bin/cythonize to 755 2024-06-19T11:29:38,106 Successfully installed Cython-3.0.10 numpy-2.0.0 setuptools-70.0.0 wheel-0.43.0 2024-06-19T11:29:38,773 Installing build dependencies: finished with status 'done' 2024-06-19T11:29:38,782 Getting requirements to build wheel: started 2024-06-19T11:29:38,783 Running command Getting requirements to build wheel 2024-06-19T11:29:45,009 Compiling src/pgenlib/pgenlib.pyx because it depends on /tmp/pip-build-env-dgfm29g5/overlay/lib/python3.9/site-packages/Cython/Includes/libc/string.pxd. 2024-06-19T11:29:45,009 [1/1] Cythonizing src/pgenlib/pgenlib.pyx 2024-06-19T11:29:45,088 running egg_info 2024-06-19T11:29:45,094 writing src/Pgenlib.egg-info/PKG-INFO 2024-06-19T11:29:45,098 writing dependency_links to src/Pgenlib.egg-info/dependency_links.txt 2024-06-19T11:29:45,100 writing requirements to src/Pgenlib.egg-info/requires.txt 2024-06-19T11:29:45,102 writing top-level names to src/Pgenlib.egg-info/top_level.txt 2024-06-19T11:29:45,134 dependency /tmp/pip-build-env-dgfm29g5/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative 2024-06-19T11:29:45,134 dependency /tmp/pip-build-env-dgfm29g5/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative 2024-06-19T11:29:45,135 dependency /tmp/pip-build-env-dgfm29g5/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative 2024-06-19T11:29:45,135 dependency /tmp/pip-build-env-dgfm29g5/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative 2024-06-19T11:29:45,135 dependency /tmp/pip-build-env-dgfm29g5/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative 2024-06-19T11:29:45,157 reading manifest file 'src/Pgenlib.egg-info/SOURCES.txt' 2024-06-19T11:29:45,177 reading manifest template 'MANIFEST.in' 2024-06-19T11:29:45,192 adding license file 'LICENSE' 2024-06-19T11:29:45,203 writing manifest file 'src/Pgenlib.egg-info/SOURCES.txt' 2024-06-19T11:29:45,604 Getting requirements to build wheel: finished with status 'done' 2024-06-19T11:29:45,613 Created temporary directory: /tmp/pip-modern-metadata-dhgtsv3b 2024-06-19T11:29:45,616 Preparing metadata (pyproject.toml): started 2024-06-19T11:29:45,617 Running command Preparing metadata (pyproject.toml) 2024-06-19T11:29:47,148 running dist_info 2024-06-19T11:29:47,154 creating /tmp/pip-modern-metadata-dhgtsv3b/Pgenlib.egg-info 2024-06-19T11:29:47,159 writing /tmp/pip-modern-metadata-dhgtsv3b/Pgenlib.egg-info/PKG-INFO 2024-06-19T11:29:47,163 writing dependency_links to /tmp/pip-modern-metadata-dhgtsv3b/Pgenlib.egg-info/dependency_links.txt 2024-06-19T11:29:47,164 writing requirements to /tmp/pip-modern-metadata-dhgtsv3b/Pgenlib.egg-info/requires.txt 2024-06-19T11:29:47,166 writing top-level names to /tmp/pip-modern-metadata-dhgtsv3b/Pgenlib.egg-info/top_level.txt 2024-06-19T11:29:47,167 writing manifest file '/tmp/pip-modern-metadata-dhgtsv3b/Pgenlib.egg-info/SOURCES.txt' 2024-06-19T11:29:47,221 dependency /tmp/pip-build-env-dgfm29g5/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative 2024-06-19T11:29:47,221 dependency /tmp/pip-build-env-dgfm29g5/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative 2024-06-19T11:29:47,221 dependency /tmp/pip-build-env-dgfm29g5/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative 2024-06-19T11:29:47,221 dependency /tmp/pip-build-env-dgfm29g5/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative 2024-06-19T11:29:47,222 dependency /tmp/pip-build-env-dgfm29g5/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative 2024-06-19T11:29:47,235 reading manifest file '/tmp/pip-modern-metadata-dhgtsv3b/Pgenlib.egg-info/SOURCES.txt' 2024-06-19T11:29:47,237 reading manifest template 'MANIFEST.in' 2024-06-19T11:29:47,247 adding license file 'LICENSE' 2024-06-19T11:29:47,255 writing manifest file '/tmp/pip-modern-metadata-dhgtsv3b/Pgenlib.egg-info/SOURCES.txt' 2024-06-19T11:29:47,257 creating '/tmp/pip-modern-metadata-dhgtsv3b/Pgenlib-0.91.0.dist-info' 2024-06-19T11:29:47,459 Preparing metadata (pyproject.toml): finished with status 'done' 2024-06-19T11:29:47,465 Source in /tmp/pip-wheel-xw_mlhw0/pgenlib_d8e637b3bc5040a98f3fb1461fd35ad4 has version 0.91.0, which satisfies requirement pgenlib==0.91.0 from https://files.pythonhosted.org/packages/69/63/b12198e1394dfd4c8e0c79c9500d146aa716f10677a02ff97c0ec38a3d4c/pgenlib-0.91.0.tar.gz 2024-06-19T11:29:47,466 Removed pgenlib==0.91.0 from https://files.pythonhosted.org/packages/69/63/b12198e1394dfd4c8e0c79c9500d146aa716f10677a02ff97c0ec38a3d4c/pgenlib-0.91.0.tar.gz from build tracker '/tmp/pip-build-tracker-01ndojv1' 2024-06-19T11:29:47,472 Created temporary directory: /tmp/pip-unpack-5ifrv48_ 2024-06-19T11:29:47,473 Created temporary directory: /tmp/pip-unpack-ah0s62cn 2024-06-19T11:29:47,476 Building wheels for collected packages: pgenlib 2024-06-19T11:29:47,480 Created temporary directory: /tmp/pip-wheel-y5aju33j 2024-06-19T11:29:47,481 Destination directory: /tmp/pip-wheel-y5aju33j 2024-06-19T11:29:47,483 Building wheel for pgenlib (pyproject.toml): started 2024-06-19T11:29:47,484 Running command Building wheel for pgenlib (pyproject.toml) 2024-06-19T11:29:48,987 running bdist_wheel 2024-06-19T11:29:49,064 running build 2024-06-19T11:29:49,064 running build_clib 2024-06-19T11:29:49,078 building 'clib' library 2024-06-19T11:29:49,081 creating build 2024-06-19T11:29:49,082 creating build/temp.linux-armv7l-cpython-39 2024-06-19T11:29:49,082 creating build/temp.linux-armv7l-cpython-39/src 2024-06-19T11:29:49,083 creating build/temp.linux-armv7l-cpython-39/src/plink2 2024-06-19T11:29:49,084 creating build/temp.linux-armv7l-cpython-39/src/plink2/libdeflate 2024-06-19T11:29:49,085 creating build/temp.linux-armv7l-cpython-39/src/plink2/libdeflate/lib 2024-06-19T11:29:49,086 creating build/temp.linux-armv7l-cpython-39/src/plink2/libdeflate/lib/arm 2024-06-19T11:29:49,087 creating build/temp.linux-armv7l-cpython-39/src/plink2/libdeflate/lib/x86 2024-06-19T11:29:49,088 creating build/temp.linux-armv7l-cpython-39/src/plink2/zstd 2024-06-19T11:29:49,088 creating build/temp.linux-armv7l-cpython-39/src/plink2/zstd/lib 2024-06-19T11:29:49,089 creating build/temp.linux-armv7l-cpython-39/src/plink2/zstd/lib/common 2024-06-19T11:29:49,090 creating build/temp.linux-armv7l-cpython-39/src/plink2/zstd/lib/compress 2024-06-19T11:29:49,091 creating build/temp.linux-armv7l-cpython-39/src/plink2/zstd/lib/decompress 2024-06-19T11:29:49,092 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DZSTD_DISABLE_ASM -DLIBDEFLATE_STATIC -Isrc/plink2/libdeflate -c src/plink2/libdeflate/lib/adler32.c -o build/temp.linux-armv7l-cpython-39/src/plink2/libdeflate/lib/adler32.o 2024-06-19T11:29:49,682 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DZSTD_DISABLE_ASM -DLIBDEFLATE_STATIC -Isrc/plink2/libdeflate -c src/plink2/libdeflate/lib/arm/arm_cpu_features.c -o build/temp.linux-armv7l-cpython-39/src/plink2/libdeflate/lib/arm/arm_cpu_features.o 2024-06-19T11:29:49,770 src/plink2/libdeflate/lib/arm/arm_cpu_features.c: In function ‘scan_auxv’: 2024-06-19T11:29:49,770 src/plink2/libdeflate/lib/arm/arm_cpu_features.c:83:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2024-06-19T11:29:49,770 83 | } while (filled < 2 * sizeof(long)); 2024-06-19T11:29:49,770 | ^ 2024-06-19T11:29:49,771 src/plink2/libdeflate/lib/arm/arm_cpu_features.c:96:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2024-06-19T11:29:49,771 96 | } while (filled >= 2 * sizeof(long)); 2024-06-19T11:29:49,771 | ^~ 2024-06-19T11:29:49,857 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DZSTD_DISABLE_ASM -DLIBDEFLATE_STATIC -Isrc/plink2/libdeflate -c src/plink2/libdeflate/lib/crc32.c -o build/temp.linux-armv7l-cpython-39/src/plink2/libdeflate/lib/crc32.o 2024-06-19T11:29:50,566 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DZSTD_DISABLE_ASM -DLIBDEFLATE_STATIC -Isrc/plink2/libdeflate -c src/plink2/libdeflate/lib/deflate_compress.c -o build/temp.linux-armv7l-cpython-39/src/plink2/libdeflate/lib/deflate_compress.o 2024-06-19T11:29:56,248 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DZSTD_DISABLE_ASM -DLIBDEFLATE_STATIC -Isrc/plink2/libdeflate -c src/plink2/libdeflate/lib/deflate_decompress.c -o build/temp.linux-armv7l-cpython-39/src/plink2/libdeflate/lib/deflate_decompress.o 2024-06-19T11:29:57,126 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DZSTD_DISABLE_ASM -DLIBDEFLATE_STATIC -Isrc/plink2/libdeflate -c src/plink2/libdeflate/lib/gzip_compress.c -o build/temp.linux-armv7l-cpython-39/src/plink2/libdeflate/lib/gzip_compress.o 2024-06-19T11:29:57,254 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DZSTD_DISABLE_ASM -DLIBDEFLATE_STATIC -Isrc/plink2/libdeflate -c src/plink2/libdeflate/lib/gzip_decompress.c -o build/temp.linux-armv7l-cpython-39/src/plink2/libdeflate/lib/gzip_decompress.o 2024-06-19T11:29:57,412 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DZSTD_DISABLE_ASM -DLIBDEFLATE_STATIC -Isrc/plink2/libdeflate -c src/plink2/libdeflate/lib/utils.c -o build/temp.linux-armv7l-cpython-39/src/plink2/libdeflate/lib/utils.o 2024-06-19T11:29:57,552 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DZSTD_DISABLE_ASM -DLIBDEFLATE_STATIC -Isrc/plink2/libdeflate -c src/plink2/libdeflate/lib/x86/x86_cpu_features.c -o build/temp.linux-armv7l-cpython-39/src/plink2/libdeflate/lib/x86/x86_cpu_features.o 2024-06-19T11:29:57,639 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DZSTD_DISABLE_ASM -DLIBDEFLATE_STATIC -Isrc/plink2/libdeflate -c src/plink2/libdeflate/lib/zlib_compress.c -o build/temp.linux-armv7l-cpython-39/src/plink2/libdeflate/lib/zlib_compress.o 2024-06-19T11:29:57,802 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DZSTD_DISABLE_ASM -DLIBDEFLATE_STATIC -Isrc/plink2/libdeflate -c src/plink2/libdeflate/lib/zlib_decompress.c -o build/temp.linux-armv7l-cpython-39/src/plink2/libdeflate/lib/zlib_decompress.o 2024-06-19T11:29:57,944 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DZSTD_DISABLE_ASM -DLIBDEFLATE_STATIC -Isrc/plink2/libdeflate -c src/plink2/zstd/lib/common/debug.c -o build/temp.linux-armv7l-cpython-39/src/plink2/zstd/lib/common/debug.o 2024-06-19T11:29:58,009 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DZSTD_DISABLE_ASM -DLIBDEFLATE_STATIC -Isrc/plink2/libdeflate -c src/plink2/zstd/lib/common/entropy_common.c -o build/temp.linux-armv7l-cpython-39/src/plink2/zstd/lib/common/entropy_common.o 2024-06-19T11:29:58,356 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DZSTD_DISABLE_ASM -DLIBDEFLATE_STATIC -Isrc/plink2/libdeflate -c src/plink2/zstd/lib/common/error_private.c -o build/temp.linux-armv7l-cpython-39/src/plink2/zstd/lib/common/error_private.o 2024-06-19T11:29:58,471 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DZSTD_DISABLE_ASM -DLIBDEFLATE_STATIC -Isrc/plink2/libdeflate -c src/plink2/zstd/lib/common/fse_decompress.c -o build/temp.linux-armv7l-cpython-39/src/plink2/zstd/lib/common/fse_decompress.o 2024-06-19T11:29:59,358 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DZSTD_DISABLE_ASM -DLIBDEFLATE_STATIC -Isrc/plink2/libdeflate -c src/plink2/zstd/lib/common/pool.c -o build/temp.linux-armv7l-cpython-39/src/plink2/zstd/lib/common/pool.o 2024-06-19T11:29:59,526 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DZSTD_DISABLE_ASM -DLIBDEFLATE_STATIC -Isrc/plink2/libdeflate -c src/plink2/zstd/lib/common/threading.c -o build/temp.linux-armv7l-cpython-39/src/plink2/zstd/lib/common/threading.o 2024-06-19T11:29:59,592 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DZSTD_DISABLE_ASM -DLIBDEFLATE_STATIC -Isrc/plink2/libdeflate -c src/plink2/zstd/lib/common/xxhash.c -o build/temp.linux-armv7l-cpython-39/src/plink2/zstd/lib/common/xxhash.o 2024-06-19T11:30:00,509 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DZSTD_DISABLE_ASM -DLIBDEFLATE_STATIC -Isrc/plink2/libdeflate -c src/plink2/zstd/lib/common/zstd_common.c -o build/temp.linux-armv7l-cpython-39/src/plink2/zstd/lib/common/zstd_common.o 2024-06-19T11:30:00,700 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DZSTD_DISABLE_ASM -DLIBDEFLATE_STATIC -Isrc/plink2/libdeflate -c src/plink2/zstd/lib/compress/fse_compress.c -o build/temp.linux-armv7l-cpython-39/src/plink2/zstd/lib/compress/fse_compress.o 2024-06-19T11:30:01,493 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DZSTD_DISABLE_ASM -DLIBDEFLATE_STATIC -Isrc/plink2/libdeflate -c src/plink2/zstd/lib/compress/hist.c -o build/temp.linux-armv7l-cpython-39/src/plink2/zstd/lib/compress/hist.o 2024-06-19T11:30:01,759 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DZSTD_DISABLE_ASM -DLIBDEFLATE_STATIC -Isrc/plink2/libdeflate -c src/plink2/zstd/lib/compress/huf_compress.c -o build/temp.linux-armv7l-cpython-39/src/plink2/zstd/lib/compress/huf_compress.o 2024-06-19T11:30:03,331 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DZSTD_DISABLE_ASM -DLIBDEFLATE_STATIC -Isrc/plink2/libdeflate -c src/plink2/zstd/lib/compress/zstd_compress.c -o build/temp.linux-armv7l-cpython-39/src/plink2/zstd/lib/compress/zstd_compress.o 2024-06-19T11:30:09,880 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DZSTD_DISABLE_ASM -DLIBDEFLATE_STATIC -Isrc/plink2/libdeflate -c src/plink2/zstd/lib/compress/zstd_compress_literals.c -o build/temp.linux-armv7l-cpython-39/src/plink2/zstd/lib/compress/zstd_compress_literals.o 2024-06-19T11:30:10,207 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DZSTD_DISABLE_ASM -DLIBDEFLATE_STATIC -Isrc/plink2/libdeflate -c src/plink2/zstd/lib/compress/zstd_compress_sequences.c -o build/temp.linux-armv7l-cpython-39/src/plink2/zstd/lib/compress/zstd_compress_sequences.o 2024-06-19T11:30:11,071 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DZSTD_DISABLE_ASM -DLIBDEFLATE_STATIC -Isrc/plink2/libdeflate -c src/plink2/zstd/lib/compress/zstd_compress_superblock.c -o build/temp.linux-armv7l-cpython-39/src/plink2/zstd/lib/compress/zstd_compress_superblock.o 2024-06-19T11:30:11,951 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DZSTD_DISABLE_ASM -DLIBDEFLATE_STATIC -Isrc/plink2/libdeflate -c src/plink2/zstd/lib/compress/zstd_double_fast.c -o build/temp.linux-armv7l-cpython-39/src/plink2/zstd/lib/compress/zstd_double_fast.o 2024-06-19T11:30:19,642 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DZSTD_DISABLE_ASM -DLIBDEFLATE_STATIC -Isrc/plink2/libdeflate -c src/plink2/zstd/lib/compress/zstd_fast.c -o build/temp.linux-armv7l-cpython-39/src/plink2/zstd/lib/compress/zstd_fast.o 2024-06-19T11:30:27,094 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DZSTD_DISABLE_ASM -DLIBDEFLATE_STATIC -Isrc/plink2/libdeflate -c src/plink2/zstd/lib/compress/zstd_lazy.c -o build/temp.linux-armv7l-cpython-39/src/plink2/zstd/lib/compress/zstd_lazy.o 2024-06-19T11:30:57,434 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DZSTD_DISABLE_ASM -DLIBDEFLATE_STATIC -Isrc/plink2/libdeflate -c src/plink2/zstd/lib/compress/zstd_ldm.c -o build/temp.linux-armv7l-cpython-39/src/plink2/zstd/lib/compress/zstd_ldm.o 2024-06-19T11:30:58,604 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DZSTD_DISABLE_ASM -DLIBDEFLATE_STATIC -Isrc/plink2/libdeflate -c src/plink2/zstd/lib/compress/zstd_opt.c -o build/temp.linux-armv7l-cpython-39/src/plink2/zstd/lib/compress/zstd_opt.o 2024-06-19T11:31:04,874 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DZSTD_DISABLE_ASM -DLIBDEFLATE_STATIC -Isrc/plink2/libdeflate -c src/plink2/zstd/lib/compress/zstdmt_compress.c -o build/temp.linux-armv7l-cpython-39/src/plink2/zstd/lib/compress/zstdmt_compress.o 2024-06-19T11:31:06,383 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DZSTD_DISABLE_ASM -DLIBDEFLATE_STATIC -Isrc/plink2/libdeflate -c src/plink2/zstd/lib/decompress/huf_decompress.c -o build/temp.linux-armv7l-cpython-39/src/plink2/zstd/lib/decompress/huf_decompress.o 2024-06-19T11:31:09,709 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DZSTD_DISABLE_ASM -DLIBDEFLATE_STATIC -Isrc/plink2/libdeflate -c src/plink2/zstd/lib/decompress/zstd_ddict.c -o build/temp.linux-armv7l-cpython-39/src/plink2/zstd/lib/decompress/zstd_ddict.o 2024-06-19T11:31:10,049 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DZSTD_DISABLE_ASM -DLIBDEFLATE_STATIC -Isrc/plink2/libdeflate -c src/plink2/zstd/lib/decompress/zstd_decompress.c -o build/temp.linux-armv7l-cpython-39/src/plink2/zstd/lib/decompress/zstd_decompress.o 2024-06-19T11:31:12,040 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DZSTD_DISABLE_ASM -DLIBDEFLATE_STATIC -Isrc/plink2/libdeflate -c src/plink2/zstd/lib/decompress/zstd_decompress_block.c -o build/temp.linux-armv7l-cpython-39/src/plink2/zstd/lib/decompress/zstd_decompress_block.o 2024-06-19T11:31:17,770 arm-linux-gnueabihf-gcc-ar rcs build/temp.linux-armv7l-cpython-39/libclib.a build/temp.linux-armv7l-cpython-39/src/plink2/libdeflate/lib/adler32.o build/temp.linux-armv7l-cpython-39/src/plink2/libdeflate/lib/arm/arm_cpu_features.o build/temp.linux-armv7l-cpython-39/src/plink2/libdeflate/lib/crc32.o build/temp.linux-armv7l-cpython-39/src/plink2/libdeflate/lib/deflate_compress.o build/temp.linux-armv7l-cpython-39/src/plink2/libdeflate/lib/deflate_decompress.o build/temp.linux-armv7l-cpython-39/src/plink2/libdeflate/lib/gzip_compress.o build/temp.linux-armv7l-cpython-39/src/plink2/libdeflate/lib/gzip_decompress.o build/temp.linux-armv7l-cpython-39/src/plink2/libdeflate/lib/utils.o build/temp.linux-armv7l-cpython-39/src/plink2/libdeflate/lib/x86/x86_cpu_features.o build/temp.linux-armv7l-cpython-39/src/plink2/libdeflate/lib/zlib_compress.o build/temp.linux-armv7l-cpython-39/src/plink2/libdeflate/lib/zlib_decompress.o build/temp.linux-armv7l-cpython-39/src/plink2/zstd/lib/common/debug.o build/temp.linux-armv7l-cpython-39/src/plink2/zstd/lib/common/entropy_common.o build/temp.linux-armv7l-cpython-39/src/plink2/zstd/lib/common/error_private.o build/temp.linux-armv7l-cpython-39/src/plink2/zstd/lib/common/fse_decompress.o build/temp.linux-armv7l-cpython-39/src/plink2/zstd/lib/common/pool.o build/temp.linux-armv7l-cpython-39/src/plink2/zstd/lib/common/threading.o build/temp.linux-armv7l-cpython-39/src/plink2/zstd/lib/common/xxhash.o build/temp.linux-armv7l-cpython-39/src/plink2/zstd/lib/common/zstd_common.o build/temp.linux-armv7l-cpython-39/src/plink2/zstd/lib/compress/fse_compress.o build/temp.linux-armv7l-cpython-39/src/plink2/zstd/lib/compress/hist.o build/temp.linux-armv7l-cpython-39/src/plink2/zstd/lib/compress/huf_compress.o build/temp.linux-armv7l-cpython-39/src/plink2/zstd/lib/compress/zstd_compress.o build/temp.linux-armv7l-cpython-39/src/plink2/zstd/lib/compress/zstd_compress_literals.o build/temp.linux-armv7l-cpython-39/src/plink2/zstd/lib/compress/zstd_compress_sequences.o build/temp.linux-armv7l-cpython-39/src/plink2/zstd/lib/compress/zstd_compress_superblock.o build/temp.linux-armv7l-cpython-39/src/plink2/zstd/lib/compress/zstd_double_fast.o build/temp.linux-armv7l-cpython-39/src/plink2/zstd/lib/compress/zstd_fast.o build/temp.linux-armv7l-cpython-39/src/plink2/zstd/lib/compress/zstd_lazy.o build/temp.linux-armv7l-cpython-39/src/plink2/zstd/lib/compress/zstd_ldm.o build/temp.linux-armv7l-cpython-39/src/plink2/zstd/lib/compress/zstd_opt.o build/temp.linux-armv7l-cpython-39/src/plink2/zstd/lib/compress/zstdmt_compress.o build/temp.linux-armv7l-cpython-39/src/plink2/zstd/lib/decompress/huf_decompress.o build/temp.linux-armv7l-cpython-39/src/plink2/zstd/lib/decompress/zstd_ddict.o build/temp.linux-armv7l-cpython-39/src/plink2/zstd/lib/decompress/zstd_decompress.o build/temp.linux-armv7l-cpython-39/src/plink2/zstd/lib/decompress/zstd_decompress_block.o 2024-06-19T11:31:17,928 running build_ext 2024-06-19T11:31:17,933 building 'pgenlib' extension 2024-06-19T11:31:17,935 creating build/temp.linux-armv7l-cpython-39/src/pgenlib 2024-06-19T11:31:17,936 creating build/temp.linux-armv7l-cpython-39/src/plink2/include 2024-06-19T11:31:17,937 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Isrc/pgenlib -I/tmp/pip-build-env-dgfm29g5/overlay/lib/python3.9/site-packages/numpy/_core/include -Isrc/plink2/libdeflate -I/usr/include/python3.9 -c src/pgenlib/pgenlib.cpp -o build/temp.linux-armv7l-cpython-39/src/pgenlib/pgenlib.o -std=c++98 -Wno-unused-function -Wno-macro-redefined -DZSTD_DISABLE_ASM -DLIBDEFLATE_STATIC 2024-06-19T11:31:18,212 In file included from /tmp/pip-build-env-dgfm29g5/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarraytypes.h:1909, 2024-06-19T11:31:18,212 from /tmp/pip-build-env-dgfm29g5/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarrayobject.h:12, 2024-06-19T11:31:18,212 from /tmp/pip-build-env-dgfm29g5/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayobject.h:5, 2024-06-19T11:31:18,213 from src/pgenlib/pgenlib.cpp:1293: 2024-06-19T11:31:18,213 /tmp/pip-build-env-dgfm29g5/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 2024-06-19T11:31:18,213 17 | #warning "Using deprecated NumPy API, disable it with " \ 2024-06-19T11:31:18,213 | ^~~~~~~ 2024-06-19T11:31:18,261 src/pgenlib/pgenlib.cpp:1532: warning: "likely" redefined 2024-06-19T11:31:18,261 1532 | #define likely(x) __builtin_expect(!!(x), 1) 2024-06-19T11:31:18,261 | 2024-06-19T11:31:18,263 In file included from src/pgenlib/../plink2/include/plink2_bits.h:23, 2024-06-19T11:31:18,263 from src/pgenlib/../plink2/include/pgenlib_misc.h:77, 2024-06-19T11:31:18,263 from src/pgenlib/pgenlib.cpp:1298: 2024-06-19T11:31:18,263 src/pgenlib/../plink2/include/plink2_base.h:274: note: this is the location of the previous definition 2024-06-19T11:31:18,264 274 | # define likely(expr) __builtin_expect(!!(expr), 1) 2024-06-19T11:31:18,264 | 2024-06-19T11:31:18,264 src/pgenlib/pgenlib.cpp:1533: warning: "unlikely" redefined 2024-06-19T11:31:18,265 1533 | #define unlikely(x) __builtin_expect(!!(x), 0) 2024-06-19T11:31:18,265 | 2024-06-19T11:31:18,265 In file included from src/pgenlib/../plink2/include/plink2_bits.h:23, 2024-06-19T11:31:18,265 from src/pgenlib/../plink2/include/pgenlib_misc.h:77, 2024-06-19T11:31:18,265 from src/pgenlib/pgenlib.cpp:1298: 2024-06-19T11:31:18,265 src/pgenlib/../plink2/include/plink2_base.h:275: note: this is the location of the previous definition 2024-06-19T11:31:18,266 275 | # define unlikely(expr) __builtin_expect(!!(expr), 0) 2024-06-19T11:31:18,266 | 2024-06-19T11:31:18,787 In file included from /tmp/pip-build-env-dgfm29g5/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ufuncobject.h:4, 2024-06-19T11:31:18,787 from src/pgenlib/pgenlib.cpp:1297: 2024-06-19T11:31:18,787 /tmp/pip-build-env-dgfm29g5/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/npy_math.h: In function ‘npy_longdouble npy_creall(npy_clongdouble)’: 2024-06-19T11:31:18,787 /tmp/pip-build-env-dgfm29g5/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/npy_math.h:405:13: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 2024-06-19T11:31:18,787 405 | return ((longdouble_t *) &z)[0]; 2024-06-19T11:31:18,788 | ~^~~~~~~~~~~~~~~~~~~~ 2024-06-19T11:31:19,268 src/pgenlib/pgenlib.cpp: In function ‘int __pyx_pw_7pgenlib_10PvarReader_1__cinit__(PyObject*, PyObject*, PyObject*)’: 2024-06-19T11:31:19,268 src/pgenlib/pgenlib.cpp:591:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-06-19T11:31:19,268 591 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-06-19T11:31:19,268 | ^ 2024-06-19T11:31:19,268 src/pgenlib/pgenlib.cpp:7516:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-06-19T11:31:19,268 7516 | CYTHON_FALLTHROUGH; 2024-06-19T11:31:19,269 | ^~~~~~~~~~~~~~~~~~ 2024-06-19T11:31:19,294 src/pgenlib/pgenlib.cpp: In function ‘PyObject* __pyx_pw_7pgenlib_10PvarReader_7get_variant_id(PyObject*, PyObject* const*, Py_ssize_t, PyObject*)’: 2024-06-19T11:31:19,295 src/pgenlib/pgenlib.cpp:591:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-06-19T11:31:19,295 591 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-06-19T11:31:19,295 | ^ 2024-06-19T11:31:19,295 src/pgenlib/pgenlib.cpp:8287:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-06-19T11:31:19,295 8287 | CYTHON_FALLTHROUGH; 2024-06-19T11:31:19,295 | ^~~~~~~~~~~~~~~~~~ 2024-06-19T11:31:19,308 src/pgenlib/pgenlib.cpp: In function ‘PyObject* __pyx_pw_7pgenlib_10PvarReader_9get_allele_ct(PyObject*, PyObject* const*, Py_ssize_t, PyObject*)’: 2024-06-19T11:31:19,308 src/pgenlib/pgenlib.cpp:591:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-06-19T11:31:19,308 591 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-06-19T11:31:19,309 | ^ 2024-06-19T11:31:19,309 src/pgenlib/pgenlib.cpp:8643:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-06-19T11:31:19,309 8643 | CYTHON_FALLTHROUGH; 2024-06-19T11:31:19,309 | ^~~~~~~~~~~~~~~~~~ 2024-06-19T11:31:19,325 src/pgenlib/pgenlib.cpp: In function ‘PyObject* __pyx_pw_7pgenlib_10PvarReader_11get_allele_code(PyObject*, PyObject* const*, Py_ssize_t, PyObject*)’: 2024-06-19T11:31:19,326 src/pgenlib/pgenlib.cpp:591:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-06-19T11:31:19,326 591 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-06-19T11:31:19,326 | ^ 2024-06-19T11:31:19,326 src/pgenlib/pgenlib.cpp:9099:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-06-19T11:31:19,326 9099 | CYTHON_FALLTHROUGH; 2024-06-19T11:31:19,326 | ^~~~~~~~~~~~~~~~~~ 2024-06-19T11:31:19,327 src/pgenlib/pgenlib.cpp:591:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-06-19T11:31:19,327 591 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-06-19T11:31:19,327 | ^ 2024-06-19T11:31:19,327 src/pgenlib/pgenlib.cpp:9101:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-06-19T11:31:19,328 9101 | CYTHON_FALLTHROUGH; 2024-06-19T11:31:19,328 | ^~~~~~~~~~~~~~~~~~ 2024-06-19T11:31:19,329 src/pgenlib/pgenlib.cpp:591:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-06-19T11:31:19,329 591 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-06-19T11:31:19,329 | ^ 2024-06-19T11:31:19,329 src/pgenlib/pgenlib.cpp:9114:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-06-19T11:31:19,330 9114 | CYTHON_FALLTHROUGH; 2024-06-19T11:31:19,330 | ^~~~~~~~~~~~~~~~~~ 2024-06-19T11:31:19,367 src/pgenlib/pgenlib.cpp: In function ‘PyObject* __pyx_pw_7pgenlib_10PvarReader_19__exit__(PyObject*, PyObject* const*, Py_ssize_t, PyObject*)’: 2024-06-19T11:31:19,367 src/pgenlib/pgenlib.cpp:591:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-06-19T11:31:19,367 591 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-06-19T11:31:19,367 | ^ 2024-06-19T11:31:19,368 src/pgenlib/pgenlib.cpp:10138:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-06-19T11:31:19,368 10138 | CYTHON_FALLTHROUGH; 2024-06-19T11:31:19,368 | ^~~~~~~~~~~~~~~~~~ 2024-06-19T11:31:19,368 src/pgenlib/pgenlib.cpp:591:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-06-19T11:31:19,369 591 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-06-19T11:31:19,369 | ^ 2024-06-19T11:31:19,369 src/pgenlib/pgenlib.cpp:10140:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-06-19T11:31:19,369 10140 | CYTHON_FALLTHROUGH; 2024-06-19T11:31:19,369 | ^~~~~~~~~~~~~~~~~~ 2024-06-19T11:31:19,370 src/pgenlib/pgenlib.cpp:591:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-06-19T11:31:19,370 591 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-06-19T11:31:19,370 | ^ 2024-06-19T11:31:19,371 src/pgenlib/pgenlib.cpp:10142:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-06-19T11:31:19,371 10142 | CYTHON_FALLTHROUGH; 2024-06-19T11:31:19,371 | ^~~~~~~~~~~~~~~~~~ 2024-06-19T11:31:19,372 src/pgenlib/pgenlib.cpp:591:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-06-19T11:31:19,372 591 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-06-19T11:31:19,373 | ^ 2024-06-19T11:31:19,373 src/pgenlib/pgenlib.cpp:10155:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-06-19T11:31:19,373 10155 | CYTHON_FALLTHROUGH; 2024-06-19T11:31:19,373 | ^~~~~~~~~~~~~~~~~~ 2024-06-19T11:31:19,374 src/pgenlib/pgenlib.cpp:591:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-06-19T11:31:19,375 591 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-06-19T11:31:19,375 | ^ 2024-06-19T11:31:19,375 src/pgenlib/pgenlib.cpp:10165:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-06-19T11:31:19,375 10165 | CYTHON_FALLTHROUGH; 2024-06-19T11:31:19,375 | ^~~~~~~~~~~~~~~~~~ 2024-06-19T11:31:19,382 src/pgenlib/pgenlib.cpp: In function ‘PyObject* __pyx_pw_7pgenlib_10PvarReader_25__setstate_cython__(PyObject*, PyObject* const*, Py_ssize_t, PyObject*)’: 2024-06-19T11:31:19,382 src/pgenlib/pgenlib.cpp:591:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-06-19T11:31:19,382 591 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-06-19T11:31:19,383 | ^ 2024-06-19T11:31:19,383 src/pgenlib/pgenlib.cpp:10427:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-06-19T11:31:19,383 10427 | CYTHON_FALLTHROUGH; 2024-06-19T11:31:19,383 | ^~~~~~~~~~~~~~~~~~ 2024-06-19T11:31:19,405 src/pgenlib/pgenlib.cpp: In function ‘int __pyx_pw_7pgenlib_10PgenReader_1__cinit__(PyObject*, PyObject*, PyObject*)’: 2024-06-19T11:31:19,405 src/pgenlib/pgenlib.cpp:591:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-06-19T11:31:19,405 591 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-06-19T11:31:19,405 | ^ 2024-06-19T11:31:19,405 src/pgenlib/pgenlib.cpp:11169:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-06-19T11:31:19,405 11169 | CYTHON_FALLTHROUGH; 2024-06-19T11:31:19,405 | ^~~~~~~~~~~~~~~~~~ 2024-06-19T11:31:19,406 src/pgenlib/pgenlib.cpp:591:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-06-19T11:31:19,406 591 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-06-19T11:31:19,407 | ^ 2024-06-19T11:31:19,407 src/pgenlib/pgenlib.cpp:11171:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-06-19T11:31:19,407 11171 | CYTHON_FALLTHROUGH; 2024-06-19T11:31:19,407 | ^~~~~~~~~~~~~~~~~~ 2024-06-19T11:31:19,408 src/pgenlib/pgenlib.cpp:591:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-06-19T11:31:19,408 591 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-06-19T11:31:19,408 | ^ 2024-06-19T11:31:19,408 src/pgenlib/pgenlib.cpp:11173:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-06-19T11:31:19,408 11173 | CYTHON_FALLTHROUGH; 2024-06-19T11:31:19,409 | ^~~~~~~~~~~~~~~~~~ 2024-06-19T11:31:19,410 src/pgenlib/pgenlib.cpp:591:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-06-19T11:31:19,410 591 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-06-19T11:31:19,410 | ^ 2024-06-19T11:31:19,410 src/pgenlib/pgenlib.cpp:11175:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-06-19T11:31:19,410 11175 | CYTHON_FALLTHROUGH; 2024-06-19T11:31:19,410 | ^~~~~~~~~~~~~~~~~~ 2024-06-19T11:31:19,411 src/pgenlib/pgenlib.cpp:591:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-06-19T11:31:19,412 591 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-06-19T11:31:19,412 | ^ 2024-06-19T11:31:19,412 src/pgenlib/pgenlib.cpp:11177:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-06-19T11:31:19,412 11177 | CYTHON_FALLTHROUGH; 2024-06-19T11:31:19,412 | ^~~~~~~~~~~~~~~~~~ 2024-06-19T11:31:19,413 src/pgenlib/pgenlib.cpp:591:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-06-19T11:31:19,413 591 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-06-19T11:31:19,413 | ^ 2024-06-19T11:31:19,414 src/pgenlib/pgenlib.cpp:11179:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-06-19T11:31:19,414 11179 | CYTHON_FALLTHROUGH; 2024-06-19T11:31:19,414 | ^~~~~~~~~~~~~~~~~~ 2024-06-19T11:31:19,415 src/pgenlib/pgenlib.cpp:591:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-06-19T11:31:19,416 591 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-06-19T11:31:19,416 | ^ 2024-06-19T11:31:19,416 src/pgenlib/pgenlib.cpp:11192:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-06-19T11:31:19,416 11192 | CYTHON_FALLTHROUGH; 2024-06-19T11:31:19,416 | ^~~~~~~~~~~~~~~~~~ 2024-06-19T11:31:19,418 src/pgenlib/pgenlib.cpp:591:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-06-19T11:31:19,418 591 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-06-19T11:31:19,418 | ^ 2024-06-19T11:31:19,418 src/pgenlib/pgenlib.cpp:11199:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-06-19T11:31:19,418 11199 | CYTHON_FALLTHROUGH; 2024-06-19T11:31:19,418 | ^~~~~~~~~~~~~~~~~~ 2024-06-19T11:31:19,420 src/pgenlib/pgenlib.cpp:591:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-06-19T11:31:19,420 591 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-06-19T11:31:19,420 | ^ 2024-06-19T11:31:19,420 src/pgenlib/pgenlib.cpp:11206:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-06-19T11:31:19,420 11206 | CYTHON_FALLTHROUGH; 2024-06-19T11:31:19,420 | ^~~~~~~~~~~~~~~~~~ 2024-06-19T11:31:19,422 src/pgenlib/pgenlib.cpp:591:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-06-19T11:31:19,422 591 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-06-19T11:31:19,422 | ^ 2024-06-19T11:31:19,422 src/pgenlib/pgenlib.cpp:11213:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-06-19T11:31:19,422 11213 | CYTHON_FALLTHROUGH; 2024-06-19T11:31:19,422 | ^~~~~~~~~~~~~~~~~~ 2024-06-19T11:31:19,424 src/pgenlib/pgenlib.cpp:591:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-06-19T11:31:19,424 591 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-06-19T11:31:19,424 | ^ 2024-06-19T11:31:19,424 src/pgenlib/pgenlib.cpp:11220:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-06-19T11:31:19,425 11220 | CYTHON_FALLTHROUGH; 2024-06-19T11:31:19,425 | ^~~~~~~~~~~~~~~~~~ 2024-06-19T11:31:19,427 src/pgenlib/pgenlib.cpp:591:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-06-19T11:31:19,427 591 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-06-19T11:31:19,427 | ^ 2024-06-19T11:31:19,427 src/pgenlib/pgenlib.cpp:11235:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-06-19T11:31:19,427 11235 | CYTHON_FALLTHROUGH; 2024-06-19T11:31:19,427 | ^~~~~~~~~~~~~~~~~~ 2024-06-19T11:31:19,429 src/pgenlib/pgenlib.cpp:591:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-06-19T11:31:19,429 591 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-06-19T11:31:19,429 | ^ 2024-06-19T11:31:19,429 src/pgenlib/pgenlib.cpp:11237:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-06-19T11:31:19,429 11237 | CYTHON_FALLTHROUGH; 2024-06-19T11:31:19,429 | ^~~~~~~~~~~~~~~~~~ 2024-06-19T11:31:19,430 src/pgenlib/pgenlib.cpp:591:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-06-19T11:31:19,430 591 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-06-19T11:31:19,431 | ^ 2024-06-19T11:31:19,431 src/pgenlib/pgenlib.cpp:11239:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-06-19T11:31:19,431 11239 | CYTHON_FALLTHROUGH; 2024-06-19T11:31:19,431 | ^~~~~~~~~~~~~~~~~~ 2024-06-19T11:31:19,432 src/pgenlib/pgenlib.cpp:591:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-06-19T11:31:19,432 591 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-06-19T11:31:19,432 | ^ 2024-06-19T11:31:19,432 src/pgenlib/pgenlib.cpp:11241:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-06-19T11:31:19,433 11241 | CYTHON_FALLTHROUGH; 2024-06-19T11:31:19,433 | ^~~~~~~~~~~~~~~~~~ 2024-06-19T11:31:19,434 src/pgenlib/pgenlib.cpp:591:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-06-19T11:31:19,434 591 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-06-19T11:31:19,434 | ^ 2024-06-19T11:31:19,434 src/pgenlib/pgenlib.cpp:11243:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-06-19T11:31:19,434 11243 | CYTHON_FALLTHROUGH; 2024-06-19T11:31:19,435 | ^~~~~~~~~~~~~~~~~~ 2024-06-19T11:31:19,486 src/pgenlib/pgenlib.cpp: In function ‘PyObject* __pyx_f_7pgenlib_10PgenReader_read(__pyx_obj_7pgenlib_PgenReader*, uint32_t, PyArrayObject*, int, __pyx_opt_args_7pgenlib_10PgenReader_read*)’: 2024-06-19T11:31:19,486 src/pgenlib/pgenlib.cpp:13599:80: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2024-06-19T11:31:19,486 13599 | __pyx_t_8 = ((__pyx_f_5numpy_7ndarray_5shape_shape(__pyx_v_geno_int_out)[0]) < __pyx_v_subset_size); 2024-06-19T11:31:19,486 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ 2024-06-19T11:31:19,503 src/pgenlib/pgenlib.cpp: In function ‘PyObject* __pyx_pw_7pgenlib_10PgenReader_11read(PyObject*, PyObject* const*, Py_ssize_t, PyObject*)’: 2024-06-19T11:31:19,503 src/pgenlib/pgenlib.cpp:591:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-06-19T11:31:19,503 591 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-06-19T11:31:19,503 | ^ 2024-06-19T11:31:19,503 src/pgenlib/pgenlib.cpp:13950:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-06-19T11:31:19,503 13950 | CYTHON_FALLTHROUGH; 2024-06-19T11:31:19,504 | ^~~~~~~~~~~~~~~~~~ 2024-06-19T11:31:19,505 src/pgenlib/pgenlib.cpp:591:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-06-19T11:31:19,505 591 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-06-19T11:31:19,505 | ^ 2024-06-19T11:31:19,505 src/pgenlib/pgenlib.cpp:13952:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-06-19T11:31:19,505 13952 | CYTHON_FALLTHROUGH; 2024-06-19T11:31:19,505 | ^~~~~~~~~~~~~~~~~~ 2024-06-19T11:31:19,507 src/pgenlib/pgenlib.cpp:591:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-06-19T11:31:19,507 591 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-06-19T11:31:19,507 | ^ 2024-06-19T11:31:19,507 src/pgenlib/pgenlib.cpp:13954:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-06-19T11:31:19,508 13954 | CYTHON_FALLTHROUGH; 2024-06-19T11:31:19,508 | ^~~~~~~~~~~~~~~~~~ 2024-06-19T11:31:19,510 src/pgenlib/pgenlib.cpp:591:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-06-19T11:31:19,510 591 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-06-19T11:31:19,510 | ^ 2024-06-19T11:31:19,510 src/pgenlib/pgenlib.cpp:13967:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-06-19T11:31:19,510 13967 | CYTHON_FALLTHROUGH; 2024-06-19T11:31:19,510 | ^~~~~~~~~~~~~~~~~~ 2024-06-19T11:31:19,512 src/pgenlib/pgenlib.cpp:591:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-06-19T11:31:19,513 591 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-06-19T11:31:19,513 | ^ 2024-06-19T11:31:19,513 src/pgenlib/pgenlib.cpp:13977:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-06-19T11:31:19,513 13977 | CYTHON_FALLTHROUGH; 2024-06-19T11:31:19,513 | ^~~~~~~~~~~~~~~~~~ 2024-06-19T11:31:19,515 src/pgenlib/pgenlib.cpp:591:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-06-19T11:31:19,516 591 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-06-19T11:31:19,516 | ^ 2024-06-19T11:31:19,516 src/pgenlib/pgenlib.cpp:13992:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-06-19T11:31:19,516 13992 | CYTHON_FALLTHROUGH; 2024-06-19T11:31:19,516 | ^~~~~~~~~~~~~~~~~~ 2024-06-19T11:31:19,527 src/pgenlib/pgenlib.cpp: In function ‘PyObject* __pyx_f_7pgenlib_10PgenReader_read_dosages(__pyx_obj_7pgenlib_PgenReader*, uint32_t, PyArrayObject*, int, __pyx_opt_args_7pgenlib_10PgenReader_read_dosages*)’: 2024-06-19T11:31:19,528 src/pgenlib/pgenlib.cpp:14277:80: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2024-06-19T11:31:19,528 14277 | __pyx_t_8 = ((__pyx_f_5numpy_7ndarray_5shape_shape(__pyx_v_floatarr_out)[0]) < __pyx_v_subset_size); 2024-06-19T11:31:19,528 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ 2024-06-19T11:31:19,542 src/pgenlib/pgenlib.cpp: In function ‘PyObject* __pyx_pw_7pgenlib_10PgenReader_13read_dosages(PyObject*, PyObject* const*, Py_ssize_t, PyObject*)’: 2024-06-19T11:31:19,542 src/pgenlib/pgenlib.cpp:591:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-06-19T11:31:19,543 591 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-06-19T11:31:19,543 | ^ 2024-06-19T11:31:19,543 src/pgenlib/pgenlib.cpp:14569:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-06-19T11:31:19,543 14569 | CYTHON_FALLTHROUGH; 2024-06-19T11:31:19,543 | ^~~~~~~~~~~~~~~~~~ 2024-06-19T11:31:19,544 src/pgenlib/pgenlib.cpp:591:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-06-19T11:31:19,544 591 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-06-19T11:31:19,544 | ^ 2024-06-19T11:31:19,545 src/pgenlib/pgenlib.cpp:14571:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-06-19T11:31:19,545 14571 | CYTHON_FALLTHROUGH; 2024-06-19T11:31:19,545 | ^~~~~~~~~~~~~~~~~~ 2024-06-19T11:31:19,546 src/pgenlib/pgenlib.cpp:591:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-06-19T11:31:19,546 591 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-06-19T11:31:19,546 | ^ 2024-06-19T11:31:19,547 src/pgenlib/pgenlib.cpp:14573:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-06-19T11:31:19,547 14573 | CYTHON_FALLTHROUGH; 2024-06-19T11:31:19,547 | ^~~~~~~~~~~~~~~~~~ 2024-06-19T11:31:19,549 src/pgenlib/pgenlib.cpp:591:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-06-19T11:31:19,549 591 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-06-19T11:31:19,549 | ^ 2024-06-19T11:31:19,549 src/pgenlib/pgenlib.cpp:14586:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-06-19T11:31:19,549 14586 | CYTHON_FALLTHROUGH; 2024-06-19T11:31:19,549 | ^~~~~~~~~~~~~~~~~~ 2024-06-19T11:31:19,551 src/pgenlib/pgenlib.cpp:591:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-06-19T11:31:19,552 591 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-06-19T11:31:19,552 | ^ 2024-06-19T11:31:19,552 src/pgenlib/pgenlib.cpp:14596:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-06-19T11:31:19,552 14596 | CYTHON_FALLTHROUGH; 2024-06-19T11:31:19,552 | ^~~~~~~~~~~~~~~~~~ 2024-06-19T11:31:19,554 src/pgenlib/pgenlib.cpp:591:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-06-19T11:31:19,555 591 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-06-19T11:31:19,555 | ^ 2024-06-19T11:31:19,555 src/pgenlib/pgenlib.cpp:14611:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-06-19T11:31:19,555 14611 | CYTHON_FALLTHROUGH; 2024-06-19T11:31:19,555 | ^~~~~~~~~~~~~~~~~~ 2024-06-19T11:31:19,566 src/pgenlib/pgenlib.cpp: In function ‘PyObject* __pyx_f_7pgenlib_10PgenReader_read_alleles(__pyx_obj_7pgenlib_PgenReader*, uint32_t, PyArrayObject*, int)’: 2024-06-19T11:31:19,566 src/pgenlib/pgenlib.cpp:14864:103: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2024-06-19T11:31:19,566 14864 | __pyx_t_7 = ((__pyx_f_5numpy_7ndarray_5shape_shape(((PyArrayObject *)__pyx_v_allele_int32_out))[0]) < __pyx_v_subset_size); 2024-06-19T11:31:19,566 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ 2024-06-19T11:31:19,577 src/pgenlib/pgenlib.cpp: In function ‘PyObject* __pyx_pw_7pgenlib_10PgenReader_15read_alleles(PyObject*, PyObject* const*, Py_ssize_t, PyObject*)’: 2024-06-19T11:31:19,577 src/pgenlib/pgenlib.cpp:591:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-06-19T11:31:19,578 591 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-06-19T11:31:19,578 | ^ 2024-06-19T11:31:19,578 src/pgenlib/pgenlib.cpp:15077:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-06-19T11:31:19,578 15077 | CYTHON_FALLTHROUGH; 2024-06-19T11:31:19,578 | ^~~~~~~~~~~~~~~~~~ 2024-06-19T11:31:19,579 src/pgenlib/pgenlib.cpp:591:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-06-19T11:31:19,579 591 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-06-19T11:31:19,580 | ^ 2024-06-19T11:31:19,580 src/pgenlib/pgenlib.cpp:15079:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-06-19T11:31:19,580 15079 | CYTHON_FALLTHROUGH; 2024-06-19T11:31:19,580 | ^~~~~~~~~~~~~~~~~~ 2024-06-19T11:31:19,582 src/pgenlib/pgenlib.cpp:591:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-06-19T11:31:19,582 591 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-06-19T11:31:19,582 | ^ 2024-06-19T11:31:19,582 src/pgenlib/pgenlib.cpp:15092:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-06-19T11:31:19,583 15092 | CYTHON_FALLTHROUGH; 2024-06-19T11:31:19,583 | ^~~~~~~~~~~~~~~~~~ 2024-06-19T11:31:19,596 src/pgenlib/pgenlib.cpp: In function ‘PyObject* __pyx_f_7pgenlib_10PgenReader_read_alleles_and_phasepresent(__pyx_obj_7pgenlib_PgenReader*, uint32_t, PyArrayObject*, PyArrayObject*, int)’: 2024-06-19T11:31:19,596 src/pgenlib/pgenlib.cpp:15383:103: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2024-06-19T11:31:19,596 15383 | __pyx_t_7 = ((__pyx_f_5numpy_7ndarray_5shape_shape(((PyArrayObject *)__pyx_v_allele_int32_out))[0]) < (2 * __pyx_v_subset_size)); 2024-06-19T11:31:19,597 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-06-19T11:31:19,599 src/pgenlib/pgenlib.cpp:15439:103: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2024-06-19T11:31:19,600 15439 | __pyx_t_7 = ((__pyx_f_5numpy_7ndarray_5shape_shape(((PyArrayObject *)__pyx_v_phasepresent_out))[0]) < __pyx_v_subset_size); 2024-06-19T11:31:19,600 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ 2024-06-19T11:31:19,612 src/pgenlib/pgenlib.cpp: In function ‘PyObject* __pyx_pw_7pgenlib_10PgenReader_17read_alleles_and_phasepresent(PyObject*, PyObject* const*, Py_ssize_t, PyObject*)’: 2024-06-19T11:31:19,613 src/pgenlib/pgenlib.cpp:591:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-06-19T11:31:19,613 591 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-06-19T11:31:19,613 | ^ 2024-06-19T11:31:19,613 src/pgenlib/pgenlib.cpp:15674:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-06-19T11:31:19,613 15674 | CYTHON_FALLTHROUGH; 2024-06-19T11:31:19,613 | ^~~~~~~~~~~~~~~~~~ 2024-06-19T11:31:19,615 src/pgenlib/pgenlib.cpp:591:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-06-19T11:31:19,615 591 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-06-19T11:31:19,615 | ^ 2024-06-19T11:31:19,615 src/pgenlib/pgenlib.cpp:15676:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-06-19T11:31:19,615 15676 | CYTHON_FALLTHROUGH; 2024-06-19T11:31:19,615 | ^~~~~~~~~~~~~~~~~~ 2024-06-19T11:31:19,617 src/pgenlib/pgenlib.cpp:591:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-06-19T11:31:19,617 591 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-06-19T11:31:19,617 | ^ 2024-06-19T11:31:19,617 src/pgenlib/pgenlib.cpp:15678:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-06-19T11:31:19,617 15678 | CYTHON_FALLTHROUGH; 2024-06-19T11:31:19,617 | ^~~~~~~~~~~~~~~~~~ 2024-06-19T11:31:19,619 src/pgenlib/pgenlib.cpp:591:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-06-19T11:31:19,620 591 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-06-19T11:31:19,620 | ^ 2024-06-19T11:31:19,620 src/pgenlib/pgenlib.cpp:15691:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-06-19T11:31:19,620 15691 | CYTHON_FALLTHROUGH; 2024-06-19T11:31:19,620 | ^~~~~~~~~~~~~~~~~~ 2024-06-19T11:31:19,622 src/pgenlib/pgenlib.cpp:591:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-06-19T11:31:19,623 591 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-06-19T11:31:19,623 | ^ 2024-06-19T11:31:19,623 src/pgenlib/pgenlib.cpp:15701:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-06-19T11:31:19,623 15701 | CYTHON_FALLTHROUGH; 2024-06-19T11:31:19,623 | ^~~~~~~~~~~~~~~~~~ 2024-06-19T11:31:19,633 src/pgenlib/pgenlib.cpp: In function ‘PyObject* __pyx_f_7pgenlib_10PgenReader_read_range_internal8(__pyx_obj_7pgenlib_PgenReader*, uint32_t, uint32_t, PyArrayObject*, __pyx_opt_args_7pgenlib_10PgenReader_read_range_internal8*)’: 2024-06-19T11:31:19,633 src/pgenlib/pgenlib.cpp:15979:102: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2024-06-19T11:31:19,633 15979 | __pyx_t_5 = ((__pyx_f_5numpy_7ndarray_5shape_shape(((PyArrayObject *)__pyx_v_geno_int8_out))[0]) < __pyx_v_variant_idx_ct); 2024-06-19T11:31:19,633 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ 2024-06-19T11:31:19,636 src/pgenlib/pgenlib.cpp:16035:102: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2024-06-19T11:31:19,637 16035 | __pyx_t_5 = ((__pyx_f_5numpy_7ndarray_5shape_shape(((PyArrayObject *)__pyx_v_geno_int8_out))[1]) < __pyx_v_subset_size); 2024-06-19T11:31:19,637 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ 2024-06-19T11:31:19,651 src/pgenlib/pgenlib.cpp:16260:100: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2024-06-19T11:31:19,651 16260 | __pyx_t_5 = ((__pyx_f_5numpy_7ndarray_5shape_shape(((PyArrayObject *)__pyx_v_geno_int8_out))[0]) < __pyx_v_subset_size); 2024-06-19T11:31:19,651 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ 2024-06-19T11:31:19,654 src/pgenlib/pgenlib.cpp:16316:100: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2024-06-19T11:31:19,655 16316 | __pyx_t_5 = ((__pyx_f_5numpy_7ndarray_5shape_shape(((PyArrayObject *)__pyx_v_geno_int8_out))[1]) < __pyx_v_variant_idx_ct); 2024-06-19T11:31:19,655 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ 2024-06-19T11:31:19,669 src/pgenlib/pgenlib.cpp: In function ‘PyObject* __pyx_f_7pgenlib_10PgenReader_read_range_internal32(__pyx_obj_7pgenlib_PgenReader*, uint32_t, uint32_t, PyArrayObject*, __pyx_opt_args_7pgenlib_10PgenReader_read_range_internal32*)’: 2024-06-19T11:31:19,669 src/pgenlib/pgenlib.cpp:16915:103: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2024-06-19T11:31:19,669 16915 | __pyx_t_5 = ((__pyx_f_5numpy_7ndarray_5shape_shape(((PyArrayObject *)__pyx_v_geno_int32_out))[0]) < __pyx_v_variant_idx_ct); 2024-06-19T11:31:19,669 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ 2024-06-19T11:31:19,672 src/pgenlib/pgenlib.cpp:16971:103: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2024-06-19T11:31:19,672 16971 | __pyx_t_5 = ((__pyx_f_5numpy_7ndarray_5shape_shape(((PyArrayObject *)__pyx_v_geno_int32_out))[1]) < __pyx_v_subset_size); 2024-06-19T11:31:19,673 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ 2024-06-19T11:31:19,681 src/pgenlib/pgenlib.cpp:17196:101: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2024-06-19T11:31:19,682 17196 | __pyx_t_5 = ((__pyx_f_5numpy_7ndarray_5shape_shape(((PyArrayObject *)__pyx_v_geno_int32_out))[0]) < __pyx_v_subset_size); 2024-06-19T11:31:19,682 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ 2024-06-19T11:31:19,685 src/pgenlib/pgenlib.cpp:17252:101: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2024-06-19T11:31:19,685 17252 | __pyx_t_5 = ((__pyx_f_5numpy_7ndarray_5shape_shape(((PyArrayObject *)__pyx_v_geno_int32_out))[1]) < __pyx_v_variant_idx_ct); 2024-06-19T11:31:19,685 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ 2024-06-19T11:31:19,699 src/pgenlib/pgenlib.cpp: In function ‘PyObject* __pyx_f_7pgenlib_10PgenReader_read_range_internal64(__pyx_obj_7pgenlib_PgenReader*, uint32_t, uint32_t, PyArrayObject*, __pyx_opt_args_7pgenlib_10PgenReader_read_range_internal64*)’: 2024-06-19T11:31:19,699 src/pgenlib/pgenlib.cpp:17851:103: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2024-06-19T11:31:19,699 17851 | __pyx_t_5 = ((__pyx_f_5numpy_7ndarray_5shape_shape(((PyArrayObject *)__pyx_v_geno_int64_out))[0]) < __pyx_v_variant_idx_ct); 2024-06-19T11:31:19,700 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ 2024-06-19T11:31:19,702 src/pgenlib/pgenlib.cpp:17907:103: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2024-06-19T11:31:19,703 17907 | __pyx_t_5 = ((__pyx_f_5numpy_7ndarray_5shape_shape(((PyArrayObject *)__pyx_v_geno_int64_out))[1]) < __pyx_v_subset_size); 2024-06-19T11:31:19,703 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ 2024-06-19T11:31:19,712 src/pgenlib/pgenlib.cpp:18132:101: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2024-06-19T11:31:19,712 18132 | __pyx_t_5 = ((__pyx_f_5numpy_7ndarray_5shape_shape(((PyArrayObject *)__pyx_v_geno_int64_out))[0]) < __pyx_v_subset_size); 2024-06-19T11:31:19,712 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ 2024-06-19T11:31:19,715 src/pgenlib/pgenlib.cpp:18188:101: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2024-06-19T11:31:19,716 18188 | __pyx_t_5 = ((__pyx_f_5numpy_7ndarray_5shape_shape(((PyArrayObject *)__pyx_v_geno_int64_out))[1]) < __pyx_v_variant_idx_ct); 2024-06-19T11:31:19,716 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ 2024-06-19T11:31:19,748 src/pgenlib/pgenlib.cpp: In function ‘PyObject* __pyx_pw_7pgenlib_10PgenReader_19read_range(PyObject*, PyObject* const*, Py_ssize_t, PyObject*)’: 2024-06-19T11:31:19,748 src/pgenlib/pgenlib.cpp:591:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-06-19T11:31:19,748 591 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-06-19T11:31:19,749 | ^ 2024-06-19T11:31:19,749 src/pgenlib/pgenlib.cpp:19030:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-06-19T11:31:19,749 19030 | CYTHON_FALLTHROUGH; 2024-06-19T11:31:19,749 | ^~~~~~~~~~~~~~~~~~ 2024-06-19T11:31:19,751 src/pgenlib/pgenlib.cpp:591:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-06-19T11:31:19,751 591 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-06-19T11:31:19,751 | ^ 2024-06-19T11:31:19,751 src/pgenlib/pgenlib.cpp:19032:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-06-19T11:31:19,751 19032 | CYTHON_FALLTHROUGH; 2024-06-19T11:31:19,752 | ^~~~~~~~~~~~~~~~~~ 2024-06-19T11:31:19,754 src/pgenlib/pgenlib.cpp:591:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-06-19T11:31:19,754 591 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-06-19T11:31:19,754 | ^ 2024-06-19T11:31:19,754 src/pgenlib/pgenlib.cpp:19034:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-06-19T11:31:19,754 19034 | CYTHON_FALLTHROUGH; 2024-06-19T11:31:19,754 | ^~~~~~~~~~~~~~~~~~ 2024-06-19T11:31:19,756 src/pgenlib/pgenlib.cpp:591:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-06-19T11:31:19,757 591 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-06-19T11:31:19,757 | ^ 2024-06-19T11:31:19,757 src/pgenlib/pgenlib.cpp:19036:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-06-19T11:31:19,757 19036 | CYTHON_FALLTHROUGH; 2024-06-19T11:31:19,757 | ^~~~~~~~~~~~~~~~~~ 2024-06-19T11:31:19,759 src/pgenlib/pgenlib.cpp:591:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-06-19T11:31:19,759 591 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-06-19T11:31:19,759 | ^ 2024-06-19T11:31:19,760 src/pgenlib/pgenlib.cpp:19038:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-06-19T11:31:19,760 19038 | CYTHON_FALLTHROUGH; 2024-06-19T11:31:19,760 | ^~~~~~~~~~~~~~~~~~ 2024-06-19T11:31:19,762 src/pgenlib/pgenlib.cpp:591:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-06-19T11:31:19,763 591 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-06-19T11:31:19,763 | ^ 2024-06-19T11:31:19,763 src/pgenlib/pgenlib.cpp:19051:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-06-19T11:31:19,763 19051 | CYTHON_FALLTHROUGH; 2024-06-19T11:31:19,763 | ^~~~~~~~~~~~~~~~~~ 2024-06-19T11:31:19,766 src/pgenlib/pgenlib.cpp:591:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-06-19T11:31:19,766 591 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-06-19T11:31:19,766 | ^ 2024-06-19T11:31:19,766 src/pgenlib/pgenlib.cpp:19061:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-06-19T11:31:19,767 19061 | CYTHON_FALLTHROUGH; 2024-06-19T11:31:19,767 | ^~~~~~~~~~~~~~~~~~ 2024-06-19T11:31:19,769 src/pgenlib/pgenlib.cpp:591:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-06-19T11:31:19,769 591 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-06-19T11:31:19,770 | ^ 2024-06-19T11:31:19,770 src/pgenlib/pgenlib.cpp:19071:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-06-19T11:31:19,770 19071 | CYTHON_FALLTHROUGH; 2024-06-19T11:31:19,770 | ^~~~~~~~~~~~~~~~~~ 2024-06-19T11:31:19,772 src/pgenlib/pgenlib.cpp:591:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-06-19T11:31:19,773 591 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-06-19T11:31:19,773 | ^ 2024-06-19T11:31:19,773 src/pgenlib/pgenlib.cpp:19078:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-06-19T11:31:19,773 19078 | CYTHON_FALLTHROUGH; 2024-06-19T11:31:19,773 | ^~~~~~~~~~~~~~~~~~ 2024-06-19T11:31:19,776 src/pgenlib/pgenlib.cpp:591:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-06-19T11:31:19,777 591 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-06-19T11:31:19,777 | ^ 2024-06-19T11:31:19,777 src/pgenlib/pgenlib.cpp:19093:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-06-19T11:31:19,777 19093 | CYTHON_FALLTHROUGH; 2024-06-19T11:31:19,777 | ^~~~~~~~~~~~~~~~~~ 2024-06-19T11:31:19,779 src/pgenlib/pgenlib.cpp:591:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-06-19T11:31:19,779 591 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-06-19T11:31:19,779 | ^ 2024-06-19T11:31:19,780 src/pgenlib/pgenlib.cpp:19095:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-06-19T11:31:19,780 19095 | CYTHON_FALLTHROUGH; 2024-06-19T11:31:19,780 | ^~~~~~~~~~~~~~~~~~ 2024-06-19T11:31:19,787 src/pgenlib/pgenlib.cpp: In function ‘PyObject* __pyx_f_7pgenlib_10PgenReader_read_list_internal8(__pyx_obj_7pgenlib_PgenReader*, PyArrayObject*, PyArrayObject*, __pyx_opt_args_7pgenlib_10PgenReader_read_list_internal8*)’: 2024-06-19T11:31:19,787 src/pgenlib/pgenlib.cpp:19361:102: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2024-06-19T11:31:19,788 19361 | __pyx_t_5 = ((__pyx_f_5numpy_7ndarray_5shape_shape(((PyArrayObject *)__pyx_v_geno_int8_out))[0]) < __pyx_v_variant_idx_ct); 2024-06-19T11:31:19,788 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ 2024-06-19T11:31:19,791 src/pgenlib/pgenlib.cpp:19417:102: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2024-06-19T11:31:19,791 19417 | __pyx_t_5 = ((__pyx_f_5numpy_7ndarray_5shape_shape(((PyArrayObject *)__pyx_v_geno_int8_out))[1]) < __pyx_v_subset_size); 2024-06-19T11:31:19,791 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ 2024-06-19T11:31:19,800 src/pgenlib/pgenlib.cpp:19658:100: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2024-06-19T11:31:19,801 19658 | __pyx_t_5 = ((__pyx_f_5numpy_7ndarray_5shape_shape(((PyArrayObject *)__pyx_v_geno_int8_out))[0]) < __pyx_v_subset_size); 2024-06-19T11:31:19,801 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ 2024-06-19T11:31:19,804 src/pgenlib/pgenlib.cpp:19714:100: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2024-06-19T11:31:19,804 19714 | __pyx_t_5 = ((__pyx_f_5numpy_7ndarray_5shape_shape(((PyArrayObject *)__pyx_v_geno_int8_out))[1]) < __pyx_v_variant_idx_ct); 2024-06-19T11:31:19,804 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ 2024-06-19T11:31:19,823 src/pgenlib/pgenlib.cpp: In function ‘PyObject* __pyx_f_7pgenlib_10PgenReader_read_list_internal32(__pyx_obj_7pgenlib_PgenReader*, PyArrayObject*, PyArrayObject*, __pyx_opt_args_7pgenlib_10PgenReader_read_list_internal32*)’: 2024-06-19T11:31:19,824 src/pgenlib/pgenlib.cpp:20409:103: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2024-06-19T11:31:19,824 20409 | __pyx_t_5 = ((__pyx_f_5numpy_7ndarray_5shape_shape(((PyArrayObject *)__pyx_v_geno_int32_out))[0]) < __pyx_v_variant_idx_ct); 2024-06-19T11:31:19,824 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ 2024-06-19T11:31:19,827 src/pgenlib/pgenlib.cpp:20465:103: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2024-06-19T11:31:19,827 20465 | __pyx_t_5 = ((__pyx_f_5numpy_7ndarray_5shape_shape(((PyArrayObject *)__pyx_v_geno_int32_out))[1]) < __pyx_v_subset_size); 2024-06-19T11:31:19,827 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ 2024-06-19T11:31:19,837 src/pgenlib/pgenlib.cpp:20706:101: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2024-06-19T11:31:19,837 20706 | __pyx_t_5 = ((__pyx_f_5numpy_7ndarray_5shape_shape(((PyArrayObject *)__pyx_v_geno_int32_out))[0]) < __pyx_v_subset_size); 2024-06-19T11:31:19,837 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ 2024-06-19T11:31:19,840 src/pgenlib/pgenlib.cpp:20762:101: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2024-06-19T11:31:19,841 20762 | __pyx_t_5 = ((__pyx_f_5numpy_7ndarray_5shape_shape(((PyArrayObject *)__pyx_v_geno_int32_out))[1]) < __pyx_v_variant_idx_ct); 2024-06-19T11:31:19,841 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ 2024-06-19T11:31:19,860 src/pgenlib/pgenlib.cpp: In function ‘PyObject* __pyx_f_7pgenlib_10PgenReader_read_list_internal64(__pyx_obj_7pgenlib_PgenReader*, PyArrayObject*, PyArrayObject*, __pyx_opt_args_7pgenlib_10PgenReader_read_list_internal64*)’: 2024-06-19T11:31:19,860 src/pgenlib/pgenlib.cpp:21457:103: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2024-06-19T11:31:19,860 21457 | __pyx_t_5 = ((__pyx_f_5numpy_7ndarray_5shape_shape(((PyArrayObject *)__pyx_v_geno_int64_out))[0]) < __pyx_v_variant_idx_ct); 2024-06-19T11:31:19,860 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ 2024-06-19T11:31:19,863 src/pgenlib/pgenlib.cpp:21513:103: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2024-06-19T11:31:19,863 21513 | __pyx_t_5 = ((__pyx_f_5numpy_7ndarray_5shape_shape(((PyArrayObject *)__pyx_v_geno_int64_out))[1]) < __pyx_v_subset_size); 2024-06-19T11:31:19,863 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ 2024-06-19T11:31:19,873 src/pgenlib/pgenlib.cpp:21754:101: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2024-06-19T11:31:19,873 21754 | __pyx_t_5 = ((__pyx_f_5numpy_7ndarray_5shape_shape(((PyArrayObject *)__pyx_v_geno_int64_out))[0]) < __pyx_v_subset_size); 2024-06-19T11:31:19,873 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ 2024-06-19T11:31:19,877 src/pgenlib/pgenlib.cpp:21810:101: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2024-06-19T11:31:19,877 21810 | __pyx_t_5 = ((__pyx_f_5numpy_7ndarray_5shape_shape(((PyArrayObject *)__pyx_v_geno_int64_out))[1]) < __pyx_v_variant_idx_ct); 2024-06-19T11:31:19,877 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ 2024-06-19T11:31:19,910 src/pgenlib/pgenlib.cpp: In function ‘PyObject* __pyx_pw_7pgenlib_10PgenReader_21read_list(PyObject*, PyObject* const*, Py_ssize_t, PyObject*)’: 2024-06-19T11:31:19,911 src/pgenlib/pgenlib.cpp:591:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-06-19T11:31:19,911 591 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-06-19T11:31:19,911 | ^ 2024-06-19T11:31:19,911 src/pgenlib/pgenlib.cpp:22679:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-06-19T11:31:19,911 22679 | CYTHON_FALLTHROUGH; 2024-06-19T11:31:19,911 | ^~~~~~~~~~~~~~~~~~ 2024-06-19T11:31:19,914 src/pgenlib/pgenlib.cpp:591:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-06-19T11:31:19,914 591 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-06-19T11:31:19,914 | ^ 2024-06-19T11:31:19,914 src/pgenlib/pgenlib.cpp:22681:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-06-19T11:31:19,914 22681 | CYTHON_FALLTHROUGH; 2024-06-19T11:31:19,914 | ^~~~~~~~~~~~~~~~~~ 2024-06-19T11:31:19,917 src/pgenlib/pgenlib.cpp:591:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-06-19T11:31:19,917 591 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-06-19T11:31:19,917 | ^ 2024-06-19T11:31:19,917 src/pgenlib/pgenlib.cpp:22683:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-06-19T11:31:19,917 22683 | CYTHON_FALLTHROUGH; 2024-06-19T11:31:19,918 | ^~~~~~~~~~~~~~~~~~ 2024-06-19T11:31:19,920 src/pgenlib/pgenlib.cpp:591:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-06-19T11:31:19,920 591 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-06-19T11:31:19,920 | ^ 2024-06-19T11:31:19,921 src/pgenlib/pgenlib.cpp:22685:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-06-19T11:31:19,921 22685 | CYTHON_FALLTHROUGH; 2024-06-19T11:31:19,921 | ^~~~~~~~~~~~~~~~~~ 2024-06-19T11:31:19,924 src/pgenlib/pgenlib.cpp:591:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-06-19T11:31:19,924 591 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-06-19T11:31:19,924 | ^ 2024-06-19T11:31:19,924 src/pgenlib/pgenlib.cpp:22698:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-06-19T11:31:19,924 22698 | CYTHON_FALLTHROUGH; 2024-06-19T11:31:19,925 | ^~~~~~~~~~~~~~~~~~ 2024-06-19T11:31:19,928 src/pgenlib/pgenlib.cpp:591:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-06-19T11:31:19,928 591 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-06-19T11:31:19,928 | ^ 2024-06-19T11:31:19,928 src/pgenlib/pgenlib.cpp:22708:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-06-19T11:31:19,928 22708 | CYTHON_FALLTHROUGH; 2024-06-19T11:31:19,929 | ^~~~~~~~~~~~~~~~~~ 2024-06-19T11:31:19,931 src/pgenlib/pgenlib.cpp:591:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-06-19T11:31:19,932 591 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-06-19T11:31:19,932 | ^ 2024-06-19T11:31:19,932 src/pgenlib/pgenlib.cpp:22715:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-06-19T11:31:19,932 22715 | CYTHON_FALLTHROUGH; 2024-06-19T11:31:19,932 | ^~~~~~~~~~~~~~~~~~ 2024-06-19T11:31:19,936 src/pgenlib/pgenlib.cpp:591:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-06-19T11:31:19,936 591 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-06-19T11:31:19,936 | ^ 2024-06-19T11:31:19,936 src/pgenlib/pgenlib.cpp:22730:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-06-19T11:31:19,936 22730 | CYTHON_FALLTHROUGH; 2024-06-19T11:31:19,936 | ^~~~~~~~~~~~~~~~~~ 2024-06-19T11:31:19,939 src/pgenlib/pgenlib.cpp:591:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-06-19T11:31:19,939 591 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-06-19T11:31:19,939 | ^ 2024-06-19T11:31:19,939 src/pgenlib/pgenlib.cpp:22732:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-06-19T11:31:19,940 22732 | CYTHON_FALLTHROUGH; 2024-06-19T11:31:19,940 | ^~~~~~~~~~~~~~~~~~ 2024-06-19T11:31:19,954 src/pgenlib/pgenlib.cpp: In function ‘PyObject* __pyx_f_7pgenlib_10PgenReader_read_alleles_range(__pyx_obj_7pgenlib_PgenReader*, uint32_t, uint32_t, PyArrayObject*, int, __pyx_opt_args_7pgenlib_10PgenReader_read_alleles_range*)’: 2024-06-19T11:31:19,954 src/pgenlib/pgenlib.cpp:23150:105: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2024-06-19T11:31:19,955 23150 | __pyx_t_9 = ((__pyx_f_5numpy_7ndarray_5shape_shape(((PyArrayObject *)__pyx_v_allele_int32_out))[0]) < __pyx_v_variant_idx_ct); 2024-06-19T11:31:19,955 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ 2024-06-19T11:31:19,958 src/pgenlib/pgenlib.cpp:23206:105: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2024-06-19T11:31:19,958 23206 | __pyx_t_9 = ((__pyx_f_5numpy_7ndarray_5shape_shape(((PyArrayObject *)__pyx_v_allele_int32_out))[1]) < (2 * __pyx_v_subset_size)); 2024-06-19T11:31:19,958 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-06-19T11:31:19,968 src/pgenlib/pgenlib.cpp:23443:103: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2024-06-19T11:31:19,968 23443 | __pyx_t_9 = ((__pyx_f_5numpy_7ndarray_5shape_shape(((PyArrayObject *)__pyx_v_allele_int32_out))[0]) < (2 * __pyx_v_subset_size)); 2024-06-19T11:31:19,969 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-06-19T11:31:19,974 src/pgenlib/pgenlib.cpp:23499:103: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2024-06-19T11:31:19,974 23499 | __pyx_t_9 = ((__pyx_f_5numpy_7ndarray_5shape_shape(((PyArrayObject *)__pyx_v_allele_int32_out))[1]) < __pyx_v_variant_idx_ct); 2024-06-19T11:31:19,974 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ 2024-06-19T11:31:19,996 src/pgenlib/pgenlib.cpp: In function ‘PyObject* __pyx_pw_7pgenlib_10PgenReader_23read_alleles_range(PyObject*, PyObject* const*, Py_ssize_t, PyObject*)’: 2024-06-19T11:31:19,996 src/pgenlib/pgenlib.cpp:591:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-06-19T11:31:19,996 591 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-06-19T11:31:19,996 | ^ 2024-06-19T11:31:19,997 src/pgenlib/pgenlib.cpp:24224:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-06-19T11:31:19,997 24224 | CYTHON_FALLTHROUGH; 2024-06-19T11:31:19,997 | ^~~~~~~~~~~~~~~~~~ 2024-06-19T11:31:19,999 src/pgenlib/pgenlib.cpp:591:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-06-19T11:31:20,000 591 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-06-19T11:31:20,000 | ^ 2024-06-19T11:31:20,000 src/pgenlib/pgenlib.cpp:24226:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-06-19T11:31:20,000 24226 | CYTHON_FALLTHROUGH; 2024-06-19T11:31:20,000 | ^~~~~~~~~~~~~~~~~~ 2024-06-19T11:31:20,003 src/pgenlib/pgenlib.cpp:591:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-06-19T11:31:20,003 591 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-06-19T11:31:20,003 | ^ 2024-06-19T11:31:20,003 src/pgenlib/pgenlib.cpp:24228:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-06-19T11:31:20,003 24228 | CYTHON_FALLTHROUGH; 2024-06-19T11:31:20,003 | ^~~~~~~~~~~~~~~~~~ 2024-06-19T11:31:20,006 src/pgenlib/pgenlib.cpp:591:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-06-19T11:31:20,006 591 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-06-19T11:31:20,007 | ^ 2024-06-19T11:31:20,007 src/pgenlib/pgenlib.cpp:24230:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-06-19T11:31:20,007 24230 | CYTHON_FALLTHROUGH; 2024-06-19T11:31:20,007 | ^~~~~~~~~~~~~~~~~~ 2024-06-19T11:31:20,010 src/pgenlib/pgenlib.cpp:591:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-06-19T11:31:20,010 591 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-06-19T11:31:20,011 | ^ 2024-06-19T11:31:20,011 src/pgenlib/pgenlib.cpp:24243:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-06-19T11:31:20,011 24243 | CYTHON_FALLTHROUGH; 2024-06-19T11:31:20,011 | ^~~~~~~~~~~~~~~~~~ 2024-06-19T11:31:20,014 src/pgenlib/pgenlib.cpp:591:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-06-19T11:31:20,015 591 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-06-19T11:31:20,015 | ^ 2024-06-19T11:31:20,015 src/pgenlib/pgenlib.cpp:24253:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-06-19T11:31:20,015 24253 | CYTHON_FALLTHROUGH; 2024-06-19T11:31:20,015 | ^~~~~~~~~~~~~~~~~~ 2024-06-19T11:31:20,018 src/pgenlib/pgenlib.cpp:591:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-06-19T11:31:20,019 591 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-06-19T11:31:20,019 | ^ 2024-06-19T11:31:20,019 src/pgenlib/pgenlib.cpp:24263:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-06-19T11:31:20,019 24263 | CYTHON_FALLTHROUGH; 2024-06-19T11:31:20,019 | ^~~~~~~~~~~~~~~~~~ 2024-06-19T11:31:20,023 src/pgenlib/pgenlib.cpp:591:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-06-19T11:31:20,023 591 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-06-19T11:31:20,023 | ^ 2024-06-19T11:31:20,023 src/pgenlib/pgenlib.cpp:24278:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-06-19T11:31:20,023 24278 | CYTHON_FALLTHROUGH; 2024-06-19T11:31:20,024 | ^~~~~~~~~~~~~~~~~~ 2024-06-19T11:31:20,035 src/pgenlib/pgenlib.cpp: In function ‘PyObject* __pyx_f_7pgenlib_10PgenReader_read_alleles_list(__pyx_obj_7pgenlib_PgenReader*, PyArrayObject*, PyArrayObject*, int, __pyx_opt_args_7pgenlib_10PgenReader_read_alleles_list*)’: 2024-06-19T11:31:20,035 src/pgenlib/pgenlib.cpp:24649:106: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2024-06-19T11:31:20,036 24649 | __pyx_t_11 = ((__pyx_f_5numpy_7ndarray_5shape_shape(((PyArrayObject *)__pyx_v_allele_int32_out))[0]) < __pyx_v_variant_idx_ct); 2024-06-19T11:31:20,036 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ 2024-06-19T11:31:20,039 src/pgenlib/pgenlib.cpp:24705:106: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2024-06-19T11:31:20,039 24705 | __pyx_t_11 = ((__pyx_f_5numpy_7ndarray_5shape_shape(((PyArrayObject *)__pyx_v_allele_int32_out))[1]) < (2 * __pyx_v_subset_size)); 2024-06-19T11:31:20,039 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-06-19T11:31:20,048 src/pgenlib/pgenlib.cpp:24946:104: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2024-06-19T11:31:20,049 24946 | __pyx_t_11 = ((__pyx_f_5numpy_7ndarray_5shape_shape(((PyArrayObject *)__pyx_v_allele_int32_out))[0]) < (2 * __pyx_v_subset_size)); 2024-06-19T11:31:20,049 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-06-19T11:31:20,052 src/pgenlib/pgenlib.cpp:25002:104: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2024-06-19T11:31:20,052 25002 | __pyx_t_11 = ((__pyx_f_5numpy_7ndarray_5shape_shape(((PyArrayObject *)__pyx_v_allele_int32_out))[1]) < __pyx_v_variant_idx_ct); 2024-06-19T11:31:20,052 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ 2024-06-19T11:31:20,076 src/pgenlib/pgenlib.cpp: In function ‘PyObject* __pyx_pw_7pgenlib_10PgenReader_25read_alleles_list(PyObject*, PyObject* const*, Py_ssize_t, PyObject*)’: 2024-06-19T11:31:20,076 src/pgenlib/pgenlib.cpp:591:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-06-19T11:31:20,077 591 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-06-19T11:31:20,077 | ^ 2024-06-19T11:31:20,077 src/pgenlib/pgenlib.cpp:25768:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-06-19T11:31:20,077 25768 | CYTHON_FALLTHROUGH; 2024-06-19T11:31:20,077 | ^~~~~~~~~~~~~~~~~~ 2024-06-19T11:31:20,080 src/pgenlib/pgenlib.cpp:591:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-06-19T11:31:20,080 591 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-06-19T11:31:20,080 | ^ 2024-06-19T11:31:20,080 src/pgenlib/pgenlib.cpp:25770:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-06-19T11:31:20,080 25770 | CYTHON_FALLTHROUGH; 2024-06-19T11:31:20,081 | ^~~~~~~~~~~~~~~~~~ 2024-06-19T11:31:20,083 src/pgenlib/pgenlib.cpp:591:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-06-19T11:31:20,084 591 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-06-19T11:31:20,084 | ^ 2024-06-19T11:31:20,084 src/pgenlib/pgenlib.cpp:25772:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-06-19T11:31:20,084 25772 | CYTHON_FALLTHROUGH; 2024-06-19T11:31:20,084 | ^~~~~~~~~~~~~~~~~~ 2024-06-19T11:31:20,088 src/pgenlib/pgenlib.cpp:591:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-06-19T11:31:20,088 591 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-06-19T11:31:20,088 | ^ 2024-06-19T11:31:20,088 src/pgenlib/pgenlib.cpp:25785:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-06-19T11:31:20,088 25785 | CYTHON_FALLTHROUGH; 2024-06-19T11:31:20,089 | ^~~~~~~~~~~~~~~~~~ 2024-06-19T11:31:20,092 src/pgenlib/pgenlib.cpp:591:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-06-19T11:31:20,092 591 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-06-19T11:31:20,092 | ^ 2024-06-19T11:31:20,093 src/pgenlib/pgenlib.cpp:25795:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-06-19T11:31:20,093 25795 | CYTHON_FALLTHROUGH; 2024-06-19T11:31:20,093 | ^~~~~~~~~~~~~~~~~~ 2024-06-19T11:31:20,097 src/pgenlib/pgenlib.cpp:591:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-06-19T11:31:20,097 591 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-06-19T11:31:20,097 | ^ 2024-06-19T11:31:20,097 src/pgenlib/pgenlib.cpp:25810:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-06-19T11:31:20,097 25810 | CYTHON_FALLTHROUGH; 2024-06-19T11:31:20,098 | ^~~~~~~~~~~~~~~~~~ 2024-06-19T11:31:20,113 src/pgenlib/pgenlib.cpp: In function ‘PyObject* __pyx_f_7pgenlib_10PgenReader_read_alleles_and_phasepresent_range(__pyx_obj_7pgenlib_PgenReader*, uint32_t, uint32_t, PyArrayObject*, PyArrayObject*, int, __pyx_opt_args_7pgenlib_10PgenReader_read_alleles_and_phasepresent_range*)’: 2024-06-19T11:31:20,113 src/pgenlib/pgenlib.cpp:26183:105: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2024-06-19T11:31:20,113 26183 | __pyx_t_9 = ((__pyx_f_5numpy_7ndarray_5shape_shape(((PyArrayObject *)__pyx_v_allele_int32_out))[0]) < __pyx_v_variant_idx_ct); 2024-06-19T11:31:20,113 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ 2024-06-19T11:31:20,117 src/pgenlib/pgenlib.cpp:26239:105: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2024-06-19T11:31:20,117 26239 | __pyx_t_9 = ((__pyx_f_5numpy_7ndarray_5shape_shape(((PyArrayObject *)__pyx_v_phasepresent_out))[0]) < __pyx_v_variant_idx_ct); 2024-06-19T11:31:20,117 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ 2024-06-19T11:31:20,120 src/pgenlib/pgenlib.cpp:26295:105: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2024-06-19T11:31:20,120 26295 | __pyx_t_9 = ((__pyx_f_5numpy_7ndarray_5shape_shape(((PyArrayObject *)__pyx_v_allele_int32_out))[1]) < (2 * __pyx_v_subset_size)); 2024-06-19T11:31:20,121 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-06-19T11:31:20,124 src/pgenlib/pgenlib.cpp:26351:105: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2024-06-19T11:31:20,124 26351 | __pyx_t_9 = ((__pyx_f_5numpy_7ndarray_5shape_shape(((PyArrayObject *)__pyx_v_phasepresent_out))[1]) < __pyx_v_subset_size); 2024-06-19T11:31:20,124 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ 2024-06-19T11:31:20,142 src/pgenlib/pgenlib.cpp: In function ‘PyObject* __pyx_pw_7pgenlib_10PgenReader_27read_alleles_and_phasepresent_range(PyObject*, PyObject* const*, Py_ssize_t, PyObject*)’: 2024-06-19T11:31:20,142 src/pgenlib/pgenlib.cpp:591:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-06-19T11:31:20,142 591 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-06-19T11:31:20,142 | ^ 2024-06-19T11:31:20,143 src/pgenlib/pgenlib.cpp:26641:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-06-19T11:31:20,143 26641 | CYTHON_FALLTHROUGH; 2024-06-19T11:31:20,143 | ^~~~~~~~~~~~~~~~~~ 2024-06-19T11:31:20,146 src/pgenlib/pgenlib.cpp:591:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-06-19T11:31:20,146 591 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-06-19T11:31:20,146 | ^ 2024-06-19T11:31:20,146 src/pgenlib/pgenlib.cpp:26643:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-06-19T11:31:20,146 26643 | CYTHON_FALLTHROUGH; 2024-06-19T11:31:20,146 | ^~~~~~~~~~~~~~~~~~ 2024-06-19T11:31:20,149 src/pgenlib/pgenlib.cpp:591:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-06-19T11:31:20,149 591 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-06-19T11:31:20,150 | ^ 2024-06-19T11:31:20,150 src/pgenlib/pgenlib.cpp:26645:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-06-19T11:31:20,150 26645 | CYTHON_FALLTHROUGH; 2024-06-19T11:31:20,150 | ^~~~~~~~~~~~~~~~~~ 2024-06-19T11:31:20,153 src/pgenlib/pgenlib.cpp:591:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-06-19T11:31:20,153 591 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-06-19T11:31:20,153 | ^ 2024-06-19T11:31:20,153 src/pgenlib/pgenlib.cpp:26647:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-06-19T11:31:20,153 26647 | CYTHON_FALLTHROUGH; 2024-06-19T11:31:20,153 | ^~~~~~~~~~~~~~~~~~ 2024-06-19T11:31:20,156 src/pgenlib/pgenlib.cpp:591:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-06-19T11:31:20,157 591 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-06-19T11:31:20,157 | ^ 2024-06-19T11:31:20,157 src/pgenlib/pgenlib.cpp:26649:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-06-19T11:31:20,157 26649 | CYTHON_FALLTHROUGH; 2024-06-19T11:31:20,157 | ^~~~~~~~~~~~~~~~~~ 2024-06-19T11:31:20,161 src/pgenlib/pgenlib.cpp:591:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-06-19T11:31:20,161 591 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-06-19T11:31:20,161 | ^ 2024-06-19T11:31:20,161 src/pgenlib/pgenlib.cpp:26662:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-06-19T11:31:20,161 26662 | CYTHON_FALLTHROUGH; 2024-06-19T11:31:20,161 | ^~~~~~~~~~~~~~~~~~ 2024-06-19T11:31:20,165 src/pgenlib/pgenlib.cpp:591:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-06-19T11:31:20,165 591 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-06-19T11:31:20,165 | ^ 2024-06-19T11:31:20,165 src/pgenlib/pgenlib.cpp:26672:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-06-19T11:31:20,166 26672 | CYTHON_FALLTHROUGH; 2024-06-19T11:31:20,166 | ^~~~~~~~~~~~~~~~~~ 2024-06-19T11:31:20,169 src/pgenlib/pgenlib.cpp:591:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-06-19T11:31:20,169 591 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-06-19T11:31:20,170 | ^ 2024-06-19T11:31:20,170 src/pgenlib/pgenlib.cpp:26682:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-06-19T11:31:20,170 26682 | CYTHON_FALLTHROUGH; 2024-06-19T11:31:20,170 | ^~~~~~~~~~~~~~~~~~ 2024-06-19T11:31:20,173 src/pgenlib/pgenlib.cpp:591:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-06-19T11:31:20,174 591 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-06-19T11:31:20,174 | ^ 2024-06-19T11:31:20,174 src/pgenlib/pgenlib.cpp:26692:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-06-19T11:31:20,174 26692 | CYTHON_FALLTHROUGH; 2024-06-19T11:31:20,174 | ^~~~~~~~~~~~~~~~~~ 2024-06-19T11:31:20,178 src/pgenlib/pgenlib.cpp:591:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-06-19T11:31:20,178 591 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-06-19T11:31:20,179 | ^ 2024-06-19T11:31:20,179 src/pgenlib/pgenlib.cpp:26707:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-06-19T11:31:20,179 26707 | CYTHON_FALLTHROUGH; 2024-06-19T11:31:20,179 | ^~~~~~~~~~~~~~~~~~ 2024-06-19T11:31:20,193 src/pgenlib/pgenlib.cpp: In function ‘PyObject* __pyx_f_7pgenlib_10PgenReader_read_alleles_and_phasepresent_list(__pyx_obj_7pgenlib_PgenReader*, PyArrayObject*, PyArrayObject*, PyArrayObject*, int, __pyx_opt_args_7pgenlib_10PgenReader_read_alleles_and_phasepresent_list*)’: 2024-06-19T11:31:20,193 src/pgenlib/pgenlib.cpp:27076:106: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2024-06-19T11:31:20,193 27076 | __pyx_t_11 = ((__pyx_f_5numpy_7ndarray_5shape_shape(((PyArrayObject *)__pyx_v_allele_int32_out))[0]) < __pyx_v_variant_idx_ct); 2024-06-19T11:31:20,194 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ 2024-06-19T11:31:20,196 src/pgenlib/pgenlib.cpp:27132:106: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2024-06-19T11:31:20,197 27132 | __pyx_t_11 = ((__pyx_f_5numpy_7ndarray_5shape_shape(((PyArrayObject *)__pyx_v_phasepresent_out))[0]) < __pyx_v_variant_idx_ct); 2024-06-19T11:31:20,197 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ 2024-06-19T11:31:20,200 src/pgenlib/pgenlib.cpp:27188:106: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2024-06-19T11:31:20,200 27188 | __pyx_t_11 = ((__pyx_f_5numpy_7ndarray_5shape_shape(((PyArrayObject *)__pyx_v_allele_int32_out))[1]) < (2 * __pyx_v_subset_size)); 2024-06-19T11:31:20,200 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-06-19T11:31:20,203 src/pgenlib/pgenlib.cpp:27244:106: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2024-06-19T11:31:20,203 27244 | __pyx_t_11 = ((__pyx_f_5numpy_7ndarray_5shape_shape(((PyArrayObject *)__pyx_v_phasepresent_out))[1]) < __pyx_v_subset_size); 2024-06-19T11:31:20,204 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ 2024-06-19T11:31:20,224 src/pgenlib/pgenlib.cpp: In function ‘PyObject* __pyx_pw_7pgenlib_10PgenReader_29read_alleles_and_phasepresent_list(PyObject*, PyObject* const*, Py_ssize_t, PyObject*)’: 2024-06-19T11:31:20,224 src/pgenlib/pgenlib.cpp:591:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-06-19T11:31:20,224 591 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-06-19T11:31:20,224 | ^ 2024-06-19T11:31:20,224 src/pgenlib/pgenlib.cpp:27593:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-06-19T11:31:20,224 27593 | CYTHON_FALLTHROUGH; 2024-06-19T11:31:20,225 | ^~~~~~~~~~~~~~~~~~ 2024-06-19T11:31:20,227 src/pgenlib/pgenlib.cpp:591:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-06-19T11:31:20,228 591 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-06-19T11:31:20,228 | ^ 2024-06-19T11:31:20,228 src/pgenlib/pgenlib.cpp:27595:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-06-19T11:31:20,228 27595 | CYTHON_FALLTHROUGH; 2024-06-19T11:31:20,228 | ^~~~~~~~~~~~~~~~~~ 2024-06-19T11:31:20,231 src/pgenlib/pgenlib.cpp:591:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-06-19T11:31:20,231 591 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-06-19T11:31:20,232 | ^ 2024-06-19T11:31:20,232 src/pgenlib/pgenlib.cpp:27597:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-06-19T11:31:20,232 27597 | CYTHON_FALLTHROUGH; 2024-06-19T11:31:20,232 | ^~~~~~~~~~~~~~~~~~ 2024-06-19T11:31:20,235 src/pgenlib/pgenlib.cpp:591:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-06-19T11:31:20,235 591 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-06-19T11:31:20,235 | ^ 2024-06-19T11:31:20,235 src/pgenlib/pgenlib.cpp:27599:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-06-19T11:31:20,236 27599 | CYTHON_FALLTHROUGH; 2024-06-19T11:31:20,236 | ^~~~~~~~~~~~~~~~~~ 2024-06-19T11:31:20,239 src/pgenlib/pgenlib.cpp:591:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-06-19T11:31:20,240 591 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-06-19T11:31:20,240 | ^ 2024-06-19T11:31:20,240 src/pgenlib/pgenlib.cpp:27612:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-06-19T11:31:20,240 27612 | CYTHON_FALLTHROUGH; 2024-06-19T11:31:20,240 | ^~~~~~~~~~~~~~~~~~ 2024-06-19T11:31:20,244 src/pgenlib/pgenlib.cpp:591:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-06-19T11:31:20,244 591 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-06-19T11:31:20,244 | ^ 2024-06-19T11:31:20,244 src/pgenlib/pgenlib.cpp:27622:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-06-19T11:31:20,244 27622 | CYTHON_FALLTHROUGH; 2024-06-19T11:31:20,245 | ^~~~~~~~~~~~~~~~~~ 2024-06-19T11:31:20,248 src/pgenlib/pgenlib.cpp:591:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-06-19T11:31:20,248 591 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-06-19T11:31:20,249 | ^ 2024-06-19T11:31:20,249 src/pgenlib/pgenlib.cpp:27632:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-06-19T11:31:20,249 27632 | CYTHON_FALLTHROUGH; 2024-06-19T11:31:20,249 | ^~~~~~~~~~~~~~~~~~ 2024-06-19T11:31:20,253 src/pgenlib/pgenlib.cpp:591:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-06-19T11:31:20,253 591 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-06-19T11:31:20,253 | ^ 2024-06-19T11:31:20,253 src/pgenlib/pgenlib.cpp:27647:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-06-19T11:31:20,253 27647 | CYTHON_FALLTHROUGH; 2024-06-19T11:31:20,254 | ^~~~~~~~~~~~~~~~~~ 2024-06-19T11:31:20,294 src/pgenlib/pgenlib.cpp: In function ‘PyObject* __pyx_pw_7pgenlib_10PgenReader_31read_dosages_range(PyObject*, PyObject* const*, Py_ssize_t, PyObject*)’: 2024-06-19T11:31:20,294 src/pgenlib/pgenlib.cpp:591:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-06-19T11:31:20,294 591 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-06-19T11:31:20,294 | ^ 2024-06-19T11:31:20,294 src/pgenlib/pgenlib.cpp:28742:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-06-19T11:31:20,295 28742 | CYTHON_FALLTHROUGH; 2024-06-19T11:31:20,295 | ^~~~~~~~~~~~~~~~~~ 2024-06-19T11:31:20,298 src/pgenlib/pgenlib.cpp:591:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-06-19T11:31:20,298 591 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-06-19T11:31:20,298 | ^ 2024-06-19T11:31:20,298 src/pgenlib/pgenlib.cpp:28744:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-06-19T11:31:20,298 28744 | CYTHON_FALLTHROUGH; 2024-06-19T11:31:20,298 | ^~~~~~~~~~~~~~~~~~ 2024-06-19T11:31:20,302 src/pgenlib/pgenlib.cpp:591:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-06-19T11:31:20,302 591 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-06-19T11:31:20,302 | ^ 2024-06-19T11:31:20,302 src/pgenlib/pgenlib.cpp:28746:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-06-19T11:31:20,302 28746 | CYTHON_FALLTHROUGH; 2024-06-19T11:31:20,302 | ^~~~~~~~~~~~~~~~~~ 2024-06-19T11:31:20,306 src/pgenlib/pgenlib.cpp:591:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-06-19T11:31:20,306 591 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-06-19T11:31:20,306 | ^ 2024-06-19T11:31:20,306 src/pgenlib/pgenlib.cpp:28748:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-06-19T11:31:20,306 28748 | CYTHON_FALLTHROUGH; 2024-06-19T11:31:20,306 | ^~~~~~~~~~~~~~~~~~ 2024-06-19T11:31:20,309 src/pgenlib/pgenlib.cpp:591:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-06-19T11:31:20,310 591 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-06-19T11:31:20,310 | ^ 2024-06-19T11:31:20,310 src/pgenlib/pgenlib.cpp:28750:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-06-19T11:31:20,310 28750 | CYTHON_FALLTHROUGH; 2024-06-19T11:31:20,310 | ^~~~~~~~~~~~~~~~~~ 2024-06-19T11:31:20,314 src/pgenlib/pgenlib.cpp:591:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-06-19T11:31:20,314 591 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-06-19T11:31:20,314 | ^ 2024-06-19T11:31:20,315 src/pgenlib/pgenlib.cpp:28763:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-06-19T11:31:20,315 28763 | CYTHON_FALLTHROUGH; 2024-06-19T11:31:20,315 | ^~~~~~~~~~~~~~~~~~ 2024-06-19T11:31:20,319 src/pgenlib/pgenlib.cpp:591:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-06-19T11:31:20,319 591 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-06-19T11:31:20,319 | ^ 2024-06-19T11:31:20,319 src/pgenlib/pgenlib.cpp:28773:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-06-19T11:31:20,319 28773 | CYTHON_FALLTHROUGH; 2024-06-19T11:31:20,319 | ^~~~~~~~~~~~~~~~~~ 2024-06-19T11:31:20,323 src/pgenlib/pgenlib.cpp:591:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-06-19T11:31:20,323 591 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-06-19T11:31:20,324 | ^ 2024-06-19T11:31:20,324 src/pgenlib/pgenlib.cpp:28783:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-06-19T11:31:20,324 28783 | CYTHON_FALLTHROUGH; 2024-06-19T11:31:20,324 | ^~~~~~~~~~~~~~~~~~ 2024-06-19T11:31:20,328 src/pgenlib/pgenlib.cpp:591:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-06-19T11:31:20,328 591 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-06-19T11:31:20,328 | ^ 2024-06-19T11:31:20,328 src/pgenlib/pgenlib.cpp:28790:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-06-19T11:31:20,328 28790 | CYTHON_FALLTHROUGH; 2024-06-19T11:31:20,329 | ^~~~~~~~~~~~~~~~~~ 2024-06-19T11:31:20,333 src/pgenlib/pgenlib.cpp:591:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-06-19T11:31:20,333 591 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-06-19T11:31:20,333 | ^ 2024-06-19T11:31:20,333 src/pgenlib/pgenlib.cpp:28805:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-06-19T11:31:20,333 28805 | CYTHON_FALLTHROUGH; 2024-06-19T11:31:20,333 | ^~~~~~~~~~~~~~~~~~ 2024-06-19T11:31:20,336 src/pgenlib/pgenlib.cpp:591:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-06-19T11:31:20,337 591 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-06-19T11:31:20,337 | ^ 2024-06-19T11:31:20,337 src/pgenlib/pgenlib.cpp:28807:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-06-19T11:31:20,337 28807 | CYTHON_FALLTHROUGH; 2024-06-19T11:31:20,337 | ^~~~~~~~~~~~~~~~~~ 2024-06-19T11:31:20,345 src/pgenlib/pgenlib.cpp: In function ‘PyObject* __pyx_f_7pgenlib_10PgenReader_read_dosages_list_internal32(__pyx_obj_7pgenlib_PgenReader*, PyArrayObject*, PyArrayObject*, __pyx_opt_args_7pgenlib_10PgenReader_read_dosages_list_internal32*)’: 2024-06-19T11:31:20,345 src/pgenlib/pgenlib.cpp:29075:101: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2024-06-19T11:31:20,345 29075 | __pyx_t_6 = ((__pyx_f_5numpy_7ndarray_5shape_shape(((PyArrayObject *)__pyx_v_floatarr_out))[0]) < __pyx_v_variant_idx_ct); 2024-06-19T11:31:20,345 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ 2024-06-19T11:31:20,348 src/pgenlib/pgenlib.cpp:29131:101: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2024-06-19T11:31:20,348 29131 | __pyx_t_6 = ((__pyx_f_5numpy_7ndarray_5shape_shape(((PyArrayObject *)__pyx_v_floatarr_out))[1]) < __pyx_v_subset_size); 2024-06-19T11:31:20,348 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ 2024-06-19T11:31:20,364 src/pgenlib/pgenlib.cpp: In function ‘PyObject* __pyx_f_7pgenlib_10PgenReader_read_dosages_list_internal64(__pyx_obj_7pgenlib_PgenReader*, PyArrayObject*, PyArrayObject*, __pyx_opt_args_7pgenlib_10PgenReader_read_dosages_list_internal64*)’: 2024-06-19T11:31:20,365 src/pgenlib/pgenlib.cpp:29592:101: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2024-06-19T11:31:20,365 29592 | __pyx_t_6 = ((__pyx_f_5numpy_7ndarray_5shape_shape(((PyArrayObject *)__pyx_v_floatarr_out))[0]) < __pyx_v_variant_idx_ct); 2024-06-19T11:31:20,365 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ 2024-06-19T11:31:20,368 src/pgenlib/pgenlib.cpp:29648:101: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2024-06-19T11:31:20,368 29648 | __pyx_t_6 = ((__pyx_f_5numpy_7ndarray_5shape_shape(((PyArrayObject *)__pyx_v_floatarr_out))[1]) < __pyx_v_subset_size); 2024-06-19T11:31:20,368 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ 2024-06-19T11:31:20,397 src/pgenlib/pgenlib.cpp: In function ‘PyObject* __pyx_pw_7pgenlib_10PgenReader_33read_dosages_list(PyObject*, PyObject* const*, Py_ssize_t, PyObject*)’: 2024-06-19T11:31:20,397 src/pgenlib/pgenlib.cpp:591:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-06-19T11:31:20,397 591 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-06-19T11:31:20,398 | ^ 2024-06-19T11:31:20,398 src/pgenlib/pgenlib.cpp:30235:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-06-19T11:31:20,398 30235 | CYTHON_FALLTHROUGH; 2024-06-19T11:31:20,398 | ^~~~~~~~~~~~~~~~~~ 2024-06-19T11:31:20,401 src/pgenlib/pgenlib.cpp:591:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-06-19T11:31:20,401 591 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-06-19T11:31:20,401 | ^ 2024-06-19T11:31:20,402 src/pgenlib/pgenlib.cpp:30237:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-06-19T11:31:20,402 30237 | CYTHON_FALLTHROUGH; 2024-06-19T11:31:20,402 | ^~~~~~~~~~~~~~~~~~ 2024-06-19T11:31:20,405 src/pgenlib/pgenlib.cpp:591:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-06-19T11:31:20,405 591 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-06-19T11:31:20,405 | ^ 2024-06-19T11:31:20,406 src/pgenlib/pgenlib.cpp:30239:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-06-19T11:31:20,406 30239 | CYTHON_FALLTHROUGH; 2024-06-19T11:31:20,406 | ^~~~~~~~~~~~~~~~~~ 2024-06-19T11:31:20,409 src/pgenlib/pgenlib.cpp:591:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-06-19T11:31:20,409 591 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-06-19T11:31:20,410 | ^ 2024-06-19T11:31:20,410 src/pgenlib/pgenlib.cpp:30241:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-06-19T11:31:20,410 30241 | CYTHON_FALLTHROUGH; 2024-06-19T11:31:20,410 | ^~~~~~~~~~~~~~~~~~ 2024-06-19T11:31:20,414 src/pgenlib/pgenlib.cpp:591:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-06-19T11:31:20,414 591 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-06-19T11:31:20,414 | ^ 2024-06-19T11:31:20,414 src/pgenlib/pgenlib.cpp:30254:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-06-19T11:31:20,415 30254 | CYTHON_FALLTHROUGH; 2024-06-19T11:31:20,415 | ^~~~~~~~~~~~~~~~~~ 2024-06-19T11:31:20,419 src/pgenlib/pgenlib.cpp:591:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-06-19T11:31:20,419 591 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-06-19T11:31:20,419 | ^ 2024-06-19T11:31:20,419 src/pgenlib/pgenlib.cpp:30264:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-06-19T11:31:20,419 30264 | CYTHON_FALLTHROUGH; 2024-06-19T11:31:20,419 | ^~~~~~~~~~~~~~~~~~ 2024-06-19T11:31:20,423 src/pgenlib/pgenlib.cpp:591:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-06-19T11:31:20,423 591 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-06-19T11:31:20,423 | ^ 2024-06-19T11:31:20,424 src/pgenlib/pgenlib.cpp:30271:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-06-19T11:31:20,424 30271 | CYTHON_FALLTHROUGH; 2024-06-19T11:31:20,424 | ^~~~~~~~~~~~~~~~~~ 2024-06-19T11:31:20,428 src/pgenlib/pgenlib.cpp:591:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-06-19T11:31:20,428 591 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-06-19T11:31:20,429 | ^ 2024-06-19T11:31:20,429 src/pgenlib/pgenlib.cpp:30286:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-06-19T11:31:20,429 30286 | CYTHON_FALLTHROUGH; 2024-06-19T11:31:20,429 | ^~~~~~~~~~~~~~~~~~ 2024-06-19T11:31:20,432 src/pgenlib/pgenlib.cpp:591:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-06-19T11:31:20,432 591 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-06-19T11:31:20,433 | ^ 2024-06-19T11:31:20,433 src/pgenlib/pgenlib.cpp:30288:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-06-19T11:31:20,433 30288 | CYTHON_FALLTHROUGH; 2024-06-19T11:31:20,433 | ^~~~~~~~~~~~~~~~~~ 2024-06-19T11:31:20,470 src/pgenlib/pgenlib.cpp: In function ‘PyObject* __pyx_pw_7pgenlib_10PgenReader_35count(PyObject*, PyObject* const*, Py_ssize_t, PyObject*)’: 2024-06-19T11:31:20,470 src/pgenlib/pgenlib.cpp:591:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-06-19T11:31:20,470 591 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-06-19T11:31:20,470 | ^ 2024-06-19T11:31:20,471 src/pgenlib/pgenlib.cpp:31425:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-06-19T11:31:20,471 31425 | CYTHON_FALLTHROUGH; 2024-06-19T11:31:20,471 | ^~~~~~~~~~~~~~~~~~ 2024-06-19T11:31:20,474 src/pgenlib/pgenlib.cpp:591:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-06-19T11:31:20,474 591 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-06-19T11:31:20,475 | ^ 2024-06-19T11:31:20,475 src/pgenlib/pgenlib.cpp:31427:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-06-19T11:31:20,475 31427 | CYTHON_FALLTHROUGH; 2024-06-19T11:31:20,475 | ^~~~~~~~~~~~~~~~~~ 2024-06-19T11:31:20,479 src/pgenlib/pgenlib.cpp:591:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-06-19T11:31:20,479 591 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-06-19T11:31:20,479 | ^ 2024-06-19T11:31:20,479 src/pgenlib/pgenlib.cpp:31429:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-06-19T11:31:20,479 31429 | CYTHON_FALLTHROUGH; 2024-06-19T11:31:20,479 | ^~~~~~~~~~~~~~~~~~ 2024-06-19T11:31:20,483 src/pgenlib/pgenlib.cpp:591:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-06-19T11:31:20,484 591 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-06-19T11:31:20,484 | ^ 2024-06-19T11:31:20,484 src/pgenlib/pgenlib.cpp:31442:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-06-19T11:31:20,484 31442 | CYTHON_FALLTHROUGH; 2024-06-19T11:31:20,484 | ^~~~~~~~~~~~~~~~~~ 2024-06-19T11:31:20,488 src/pgenlib/pgenlib.cpp:591:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-06-19T11:31:20,489 591 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-06-19T11:31:20,489 | ^ 2024-06-19T11:31:20,489 src/pgenlib/pgenlib.cpp:31452:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-06-19T11:31:20,489 31452 | CYTHON_FALLTHROUGH; 2024-06-19T11:31:20,489 | ^~~~~~~~~~~~~~~~~~ 2024-06-19T11:31:20,494 src/pgenlib/pgenlib.cpp:591:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-06-19T11:31:20,494 591 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-06-19T11:31:20,494 | ^ 2024-06-19T11:31:20,494 src/pgenlib/pgenlib.cpp:31467:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-06-19T11:31:20,494 31467 | CYTHON_FALLTHROUGH; 2024-06-19T11:31:20,495 | ^~~~~~~~~~~~~~~~~~ 2024-06-19T11:31:20,509 src/pgenlib/pgenlib.cpp: In function ‘PyObject* __pyx_pw_7pgenlib_10PgenReader_37change_sample_subset(PyObject*, PyObject* const*, Py_ssize_t, PyObject*)’: 2024-06-19T11:31:20,509 src/pgenlib/pgenlib.cpp:591:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-06-19T11:31:20,509 591 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-06-19T11:31:20,509 | ^ 2024-06-19T11:31:20,510 src/pgenlib/pgenlib.cpp:31780:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-06-19T11:31:20,510 31780 | CYTHON_FALLTHROUGH; 2024-06-19T11:31:20,510 | ^~~~~~~~~~~~~~~~~~ 2024-06-19T11:31:20,514 src/pgenlib/pgenlib.cpp:591:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-06-19T11:31:20,514 591 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-06-19T11:31:20,515 | ^ 2024-06-19T11:31:20,515 src/pgenlib/pgenlib.cpp:31800:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-06-19T11:31:20,515 31800 | CYTHON_FALLTHROUGH; 2024-06-19T11:31:20,515 | ^~~~~~~~~~~~~~~~~~ 2024-06-19T11:31:20,534 src/pgenlib/pgenlib.cpp: In function ‘PyObject* __pyx_pw_7pgenlib_10PgenReader_41__exit__(PyObject*, PyObject* const*, Py_ssize_t, PyObject*)’: 2024-06-19T11:31:20,534 src/pgenlib/pgenlib.cpp:591:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-06-19T11:31:20,534 591 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-06-19T11:31:20,535 | ^ 2024-06-19T11:31:20,535 src/pgenlib/pgenlib.cpp:32471:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-06-19T11:31:20,535 32471 | CYTHON_FALLTHROUGH; 2024-06-19T11:31:20,535 | ^~~~~~~~~~~~~~~~~~ 2024-06-19T11:31:20,538 src/pgenlib/pgenlib.cpp:591:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-06-19T11:31:20,539 591 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-06-19T11:31:20,539 | ^ 2024-06-19T11:31:20,539 src/pgenlib/pgenlib.cpp:32473:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-06-19T11:31:20,539 32473 | CYTHON_FALLTHROUGH; 2024-06-19T11:31:20,539 | ^~~~~~~~~~~~~~~~~~ 2024-06-19T11:31:20,543 src/pgenlib/pgenlib.cpp:591:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-06-19T11:31:20,543 591 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-06-19T11:31:20,543 | ^ 2024-06-19T11:31:20,543 src/pgenlib/pgenlib.cpp:32475:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-06-19T11:31:20,544 32475 | CYTHON_FALLTHROUGH; 2024-06-19T11:31:20,544 | ^~~~~~~~~~~~~~~~~~ 2024-06-19T11:31:20,548 src/pgenlib/pgenlib.cpp:591:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-06-19T11:31:20,548 591 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-06-19T11:31:20,548 | ^ 2024-06-19T11:31:20,549 src/pgenlib/pgenlib.cpp:32488:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-06-19T11:31:20,549 32488 | CYTHON_FALLTHROUGH; 2024-06-19T11:31:20,549 | ^~~~~~~~~~~~~~~~~~ 2024-06-19T11:31:20,553 src/pgenlib/pgenlib.cpp:591:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-06-19T11:31:20,553 591 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-06-19T11:31:20,554 | ^ 2024-06-19T11:31:20,554 src/pgenlib/pgenlib.cpp:32498:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-06-19T11:31:20,554 32498 | CYTHON_FALLTHROUGH; 2024-06-19T11:31:20,554 | ^~~~~~~~~~~~~~~~~~ 2024-06-19T11:31:20,565 src/pgenlib/pgenlib.cpp: In function ‘PyObject* __pyx_pw_7pgenlib_10PgenReader_47__setstate_cython__(PyObject*, PyObject* const*, Py_ssize_t, PyObject*)’: 2024-06-19T11:31:20,565 src/pgenlib/pgenlib.cpp:591:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-06-19T11:31:20,565 591 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-06-19T11:31:20,565 | ^ 2024-06-19T11:31:20,565 src/pgenlib/pgenlib.cpp:32948:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-06-19T11:31:20,565 32948 | CYTHON_FALLTHROUGH; 2024-06-19T11:31:20,566 | ^~~~~~~~~~~~~~~~~~ 2024-06-19T11:31:20,575 src/pgenlib/pgenlib.cpp: In function ‘int __pyx_pw_7pgenlib_10PgenWriter_1__cinit__(PyObject*, PyObject*, PyObject*)’: 2024-06-19T11:31:20,575 src/pgenlib/pgenlib.cpp:591:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-06-19T11:31:20,575 591 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-06-19T11:31:20,575 | ^ 2024-06-19T11:31:20,576 src/pgenlib/pgenlib.cpp:33161:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-06-19T11:31:20,576 33161 | CYTHON_FALLTHROUGH; 2024-06-19T11:31:20,576 | ^~~~~~~~~~~~~~~~~~ 2024-06-19T11:31:20,580 src/pgenlib/pgenlib.cpp:591:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-06-19T11:31:20,580 591 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-06-19T11:31:20,580 | ^ 2024-06-19T11:31:20,580 src/pgenlib/pgenlib.cpp:33163:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-06-19T11:31:20,580 33163 | CYTHON_FALLTHROUGH; 2024-06-19T11:31:20,580 | ^~~~~~~~~~~~~~~~~~ 2024-06-19T11:31:20,585 src/pgenlib/pgenlib.cpp:591:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-06-19T11:31:20,585 591 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-06-19T11:31:20,585 | ^ 2024-06-19T11:31:20,585 src/pgenlib/pgenlib.cpp:33165:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-06-19T11:31:20,585 33165 | CYTHON_FALLTHROUGH; 2024-06-19T11:31:20,585 | ^~~~~~~~~~~~~~~~~~ 2024-06-19T11:31:20,589 src/pgenlib/pgenlib.cpp:591:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-06-19T11:31:20,589 591 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-06-19T11:31:20,590 | ^ 2024-06-19T11:31:20,590 src/pgenlib/pgenlib.cpp:33167:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-06-19T11:31:20,590 33167 | CYTHON_FALLTHROUGH; 2024-06-19T11:31:20,590 | ^~~~~~~~~~~~~~~~~~ 2024-06-19T11:31:20,594 src/pgenlib/pgenlib.cpp:591:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-06-19T11:31:20,594 591 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-06-19T11:31:20,594 | ^ 2024-06-19T11:31:20,594 src/pgenlib/pgenlib.cpp:33169:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-06-19T11:31:20,595 33169 | CYTHON_FALLTHROUGH; 2024-06-19T11:31:20,595 | ^~~~~~~~~~~~~~~~~~ 2024-06-19T11:31:20,599 src/pgenlib/pgenlib.cpp:591:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-06-19T11:31:20,599 591 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-06-19T11:31:20,599 | ^ 2024-06-19T11:31:20,599 src/pgenlib/pgenlib.cpp:33171:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-06-19T11:31:20,599 33171 | CYTHON_FALLTHROUGH; 2024-06-19T11:31:20,599 | ^~~~~~~~~~~~~~~~~~ 2024-06-19T11:31:20,603 src/pgenlib/pgenlib.cpp:591:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-06-19T11:31:20,604 591 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-06-19T11:31:20,604 | ^ 2024-06-19T11:31:20,604 src/pgenlib/pgenlib.cpp:33173:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-06-19T11:31:20,604 33173 | CYTHON_FALLTHROUGH; 2024-06-19T11:31:20,604 | ^~~~~~~~~~~~~~~~~~ 2024-06-19T11:31:20,608 src/pgenlib/pgenlib.cpp:591:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-06-19T11:31:20,608 591 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-06-19T11:31:20,609 | ^ 2024-06-19T11:31:20,609 src/pgenlib/pgenlib.cpp:33175:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-06-19T11:31:20,609 33175 | CYTHON_FALLTHROUGH; 2024-06-19T11:31:20,609 | ^~~~~~~~~~~~~~~~~~ 2024-06-19T11:31:20,613 src/pgenlib/pgenlib.cpp:591:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-06-19T11:31:20,613 591 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-06-19T11:31:20,613 | ^ 2024-06-19T11:31:20,613 src/pgenlib/pgenlib.cpp:33177:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-06-19T11:31:20,614 33177 | CYTHON_FALLTHROUGH; 2024-06-19T11:31:20,614 | ^~~~~~~~~~~~~~~~~~ 2024-06-19T11:31:20,618 src/pgenlib/pgenlib.cpp:591:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-06-19T11:31:20,618 591 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-06-19T11:31:20,619 | ^ 2024-06-19T11:31:20,619 src/pgenlib/pgenlib.cpp:33190:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-06-19T11:31:20,619 33190 | CYTHON_FALLTHROUGH; 2024-06-19T11:31:20,619 | ^~~~~~~~~~~~~~~~~~ 2024-06-19T11:31:20,623 src/pgenlib/pgenlib.cpp:591:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-06-19T11:31:20,624 591 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-06-19T11:31:20,624 | ^ 2024-06-19T11:31:20,624 src/pgenlib/pgenlib.cpp:33200:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-06-19T11:31:20,624 33200 | CYTHON_FALLTHROUGH; 2024-06-19T11:31:20,624 | ^~~~~~~~~~~~~~~~~~ 2024-06-19T11:31:20,629 src/pgenlib/pgenlib.cpp:591:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-06-19T11:31:20,629 591 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-06-19T11:31:20,629 | ^ 2024-06-19T11:31:20,629 src/pgenlib/pgenlib.cpp:33207:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-06-19T11:31:20,629 33207 | CYTHON_FALLTHROUGH; 2024-06-19T11:31:20,629 | ^~~~~~~~~~~~~~~~~~ 2024-06-19T11:31:20,634 src/pgenlib/pgenlib.cpp:591:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-06-19T11:31:20,634 591 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-06-19T11:31:20,634 | ^ 2024-06-19T11:31:20,634 src/pgenlib/pgenlib.cpp:33214:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-06-19T11:31:20,634 33214 | CYTHON_FALLTHROUGH; 2024-06-19T11:31:20,635 | ^~~~~~~~~~~~~~~~~~ 2024-06-19T11:31:20,639 src/pgenlib/pgenlib.cpp:591:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-06-19T11:31:20,639 591 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-06-19T11:31:20,639 | ^ 2024-06-19T11:31:20,639 src/pgenlib/pgenlib.cpp:33221:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-06-19T11:31:20,639 33221 | CYTHON_FALLTHROUGH; 2024-06-19T11:31:20,640 | ^~~~~~~~~~~~~~~~~~ 2024-06-19T11:31:20,644 src/pgenlib/pgenlib.cpp:591:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-06-19T11:31:20,644 591 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-06-19T11:31:20,644 | ^ 2024-06-19T11:31:20,644 src/pgenlib/pgenlib.cpp:33228:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-06-19T11:31:20,645 33228 | CYTHON_FALLTHROUGH; 2024-06-19T11:31:20,645 | ^~~~~~~~~~~~~~~~~~ 2024-06-19T11:31:20,649 src/pgenlib/pgenlib.cpp:591:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-06-19T11:31:20,649 591 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-06-19T11:31:20,649 | ^ 2024-06-19T11:31:20,649 src/pgenlib/pgenlib.cpp:33235:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-06-19T11:31:20,650 33235 | CYTHON_FALLTHROUGH; 2024-06-19T11:31:20,650 | ^~~~~~~~~~~~~~~~~~ 2024-06-19T11:31:20,654 src/pgenlib/pgenlib.cpp:591:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-06-19T11:31:20,654 591 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-06-19T11:31:20,654 | ^ 2024-06-19T11:31:20,654 src/pgenlib/pgenlib.cpp:33242:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-06-19T11:31:20,655 33242 | CYTHON_FALLTHROUGH; 2024-06-19T11:31:20,655 | ^~~~~~~~~~~~~~~~~~ 2024-06-19T11:31:20,659 src/pgenlib/pgenlib.cpp:591:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-06-19T11:31:20,660 591 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-06-19T11:31:20,660 | ^ 2024-06-19T11:31:20,660 src/pgenlib/pgenlib.cpp:33257:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-06-19T11:31:20,660 33257 | CYTHON_FALLTHROUGH; 2024-06-19T11:31:20,660 | ^~~~~~~~~~~~~~~~~~ 2024-06-19T11:31:20,664 src/pgenlib/pgenlib.cpp:591:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-06-19T11:31:20,664 591 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-06-19T11:31:20,664 | ^ 2024-06-19T11:31:20,664 src/pgenlib/pgenlib.cpp:33259:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-06-19T11:31:20,664 33259 | CYTHON_FALLTHROUGH; 2024-06-19T11:31:20,665 | ^~~~~~~~~~~~~~~~~~ 2024-06-19T11:31:20,668 src/pgenlib/pgenlib.cpp:591:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-06-19T11:31:20,669 591 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-06-19T11:31:20,669 | ^ 2024-06-19T11:31:20,669 src/pgenlib/pgenlib.cpp:33261:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-06-19T11:31:20,669 33261 | CYTHON_FALLTHROUGH; 2024-06-19T11:31:20,669 | ^~~~~~~~~~~~~~~~~~ 2024-06-19T11:31:20,673 src/pgenlib/pgenlib.cpp:591:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-06-19T11:31:20,673 591 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-06-19T11:31:20,673 | ^ 2024-06-19T11:31:20,673 src/pgenlib/pgenlib.cpp:33263:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-06-19T11:31:20,673 33263 | CYTHON_FALLTHROUGH; 2024-06-19T11:31:20,674 | ^~~~~~~~~~~~~~~~~~ 2024-06-19T11:31:20,677 src/pgenlib/pgenlib.cpp:591:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-06-19T11:31:20,678 591 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-06-19T11:31:20,678 | ^ 2024-06-19T11:31:20,678 src/pgenlib/pgenlib.cpp:33265:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-06-19T11:31:20,678 33265 | CYTHON_FALLTHROUGH; 2024-06-19T11:31:20,678 | ^~~~~~~~~~~~~~~~~~ 2024-06-19T11:31:20,682 src/pgenlib/pgenlib.cpp:591:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-06-19T11:31:20,682 591 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-06-19T11:31:20,682 | ^ 2024-06-19T11:31:20,682 src/pgenlib/pgenlib.cpp:33267:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-06-19T11:31:20,683 33267 | CYTHON_FALLTHROUGH; 2024-06-19T11:31:20,683 | ^~~~~~~~~~~~~~~~~~ 2024-06-19T11:31:20,686 src/pgenlib/pgenlib.cpp:591:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-06-19T11:31:20,687 591 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-06-19T11:31:20,687 | ^ 2024-06-19T11:31:20,687 src/pgenlib/pgenlib.cpp:33269:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-06-19T11:31:20,687 33269 | CYTHON_FALLTHROUGH; 2024-06-19T11:31:20,687 | ^~~~~~~~~~~~~~~~~~ 2024-06-19T11:31:20,725 src/pgenlib/pgenlib.cpp: In function ‘PyObject* __pyx_pw_7pgenlib_10PgenWriter_5append_biallelic(PyObject*, PyObject* const*, Py_ssize_t, PyObject*)’: 2024-06-19T11:31:20,726 src/pgenlib/pgenlib.cpp:591:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-06-19T11:31:20,726 591 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-06-19T11:31:20,726 | ^ 2024-06-19T11:31:20,726 src/pgenlib/pgenlib.cpp:34741:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-06-19T11:31:20,726 34741 | CYTHON_FALLTHROUGH; 2024-06-19T11:31:20,726 | ^~~~~~~~~~~~~~~~~~ 2024-06-19T11:31:20,751 src/pgenlib/pgenlib.cpp: In function ‘PyObject* __pyx_pw_7pgenlib_10PgenWriter_7append_alleles(PyObject*, PyObject* const*, Py_ssize_t, PyObject*)’: 2024-06-19T11:31:20,751 src/pgenlib/pgenlib.cpp:591:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-06-19T11:31:20,751 591 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-06-19T11:31:20,752 | ^ 2024-06-19T11:31:20,752 src/pgenlib/pgenlib.cpp:35564:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-06-19T11:31:20,752 35564 | CYTHON_FALLTHROUGH; 2024-06-19T11:31:20,752 | ^~~~~~~~~~~~~~~~~~ 2024-06-19T11:31:20,756 src/pgenlib/pgenlib.cpp:591:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-06-19T11:31:20,756 591 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-06-19T11:31:20,756 | ^ 2024-06-19T11:31:20,756 src/pgenlib/pgenlib.cpp:35566:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-06-19T11:31:20,756 35566 | CYTHON_FALLTHROUGH; 2024-06-19T11:31:20,757 | ^~~~~~~~~~~~~~~~~~ 2024-06-19T11:31:20,761 src/pgenlib/pgenlib.cpp:591:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-06-19T11:31:20,761 591 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-06-19T11:31:20,761 | ^ 2024-06-19T11:31:20,761 src/pgenlib/pgenlib.cpp:35568:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-06-19T11:31:20,761 35568 | CYTHON_FALLTHROUGH; 2024-06-19T11:31:20,761 | ^~~~~~~~~~~~~~~~~~ 2024-06-19T11:31:20,766 src/pgenlib/pgenlib.cpp:591:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-06-19T11:31:20,766 591 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-06-19T11:31:20,766 | ^ 2024-06-19T11:31:20,767 src/pgenlib/pgenlib.cpp:35581:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-06-19T11:31:20,767 35581 | CYTHON_FALLTHROUGH; 2024-06-19T11:31:20,767 | ^~~~~~~~~~~~~~~~~~ 2024-06-19T11:31:20,771 src/pgenlib/pgenlib.cpp:591:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-06-19T11:31:20,771 591 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-06-19T11:31:20,772 | ^ 2024-06-19T11:31:20,772 src/pgenlib/pgenlib.cpp:35588:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-06-19T11:31:20,772 35588 | CYTHON_FALLTHROUGH; 2024-06-19T11:31:20,772 | ^~~~~~~~~~~~~~~~~~ 2024-06-19T11:31:20,777 src/pgenlib/pgenlib.cpp:591:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-06-19T11:31:20,777 591 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-06-19T11:31:20,777 | ^ 2024-06-19T11:31:20,778 src/pgenlib/pgenlib.cpp:35603:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-06-19T11:31:20,778 35603 | CYTHON_FALLTHROUGH; 2024-06-19T11:31:20,778 | ^~~~~~~~~~~~~~~~~~ 2024-06-19T11:31:20,782 src/pgenlib/pgenlib.cpp:591:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-06-19T11:31:20,782 591 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-06-19T11:31:20,782 | ^ 2024-06-19T11:31:20,782 src/pgenlib/pgenlib.cpp:35605:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-06-19T11:31:20,783 35605 | CYTHON_FALLTHROUGH; 2024-06-19T11:31:20,783 | ^~~~~~~~~~~~~~~~~~ 2024-06-19T11:31:20,808 src/pgenlib/pgenlib.cpp: In function ‘PyObject* __pyx_pw_7pgenlib_10PgenWriter_9append_partially_phased(PyObject*, PyObject* const*, Py_ssize_t, PyObject*)’: 2024-06-19T11:31:20,809 src/pgenlib/pgenlib.cpp:591:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-06-19T11:31:20,809 591 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-06-19T11:31:20,809 | ^ 2024-06-19T11:31:20,809 src/pgenlib/pgenlib.cpp:36357:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-06-19T11:31:20,809 36357 | CYTHON_FALLTHROUGH; 2024-06-19T11:31:20,809 | ^~~~~~~~~~~~~~~~~~ 2024-06-19T11:31:20,813 src/pgenlib/pgenlib.cpp:591:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-06-19T11:31:20,814 591 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-06-19T11:31:20,814 | ^ 2024-06-19T11:31:20,814 src/pgenlib/pgenlib.cpp:36359:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-06-19T11:31:20,814 36359 | CYTHON_FALLTHROUGH; 2024-06-19T11:31:20,814 | ^~~~~~~~~~~~~~~~~~ 2024-06-19T11:31:20,818 src/pgenlib/pgenlib.cpp:591:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-06-19T11:31:20,819 591 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-06-19T11:31:20,819 | ^ 2024-06-19T11:31:20,819 src/pgenlib/pgenlib.cpp:36361:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-06-19T11:31:20,819 36361 | CYTHON_FALLTHROUGH; 2024-06-19T11:31:20,819 | ^~~~~~~~~~~~~~~~~~ 2024-06-19T11:31:20,824 src/pgenlib/pgenlib.cpp:591:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-06-19T11:31:20,824 591 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-06-19T11:31:20,824 | ^ 2024-06-19T11:31:20,825 src/pgenlib/pgenlib.cpp:36374:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-06-19T11:31:20,825 36374 | CYTHON_FALLTHROUGH; 2024-06-19T11:31:20,825 | ^~~~~~~~~~~~~~~~~~ 2024-06-19T11:31:20,830 src/pgenlib/pgenlib.cpp:591:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-06-19T11:31:20,830 591 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-06-19T11:31:20,830 | ^ 2024-06-19T11:31:20,830 src/pgenlib/pgenlib.cpp:36384:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-06-19T11:31:20,830 36384 | CYTHON_FALLTHROUGH; 2024-06-19T11:31:20,830 | ^~~~~~~~~~~~~~~~~~ 2024-06-19T11:31:20,835 src/pgenlib/pgenlib.cpp:591:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-06-19T11:31:20,836 591 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-06-19T11:31:20,836 | ^ 2024-06-19T11:31:20,836 src/pgenlib/pgenlib.cpp:36399:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-06-19T11:31:20,836 36399 | CYTHON_FALLTHROUGH; 2024-06-19T11:31:20,836 | ^~~~~~~~~~~~~~~~~~ 2024-06-19T11:31:20,866 src/pgenlib/pgenlib.cpp: In function ‘PyObject* __pyx_pw_7pgenlib_10PgenWriter_11append_dosages(PyObject*, PyObject* const*, Py_ssize_t, PyObject*)’: 2024-06-19T11:31:20,867 src/pgenlib/pgenlib.cpp:591:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-06-19T11:31:20,867 591 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-06-19T11:31:20,867 | ^ 2024-06-19T11:31:20,867 src/pgenlib/pgenlib.cpp:37152:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-06-19T11:31:20,867 37152 | CYTHON_FALLTHROUGH; 2024-06-19T11:31:20,867 | ^~~~~~~~~~~~~~~~~~ 2024-06-19T11:31:20,885 src/pgenlib/pgenlib.cpp: In function ‘PyObject* __pyx_pw_7pgenlib_10PgenWriter_13append_biallelic_batch(PyObject*, PyObject* const*, Py_ssize_t, PyObject*)’: 2024-06-19T11:31:20,885 src/pgenlib/pgenlib.cpp:591:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-06-19T11:31:20,885 591 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-06-19T11:31:20,885 | ^ 2024-06-19T11:31:20,886 src/pgenlib/pgenlib.cpp:37525:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-06-19T11:31:20,886 37525 | CYTHON_FALLTHROUGH; 2024-06-19T11:31:20,886 | ^~~~~~~~~~~~~~~~~~ 2024-06-19T11:31:20,919 src/pgenlib/pgenlib.cpp: In function ‘PyObject* __pyx_pw_7pgenlib_10PgenWriter_15append_alleles_batch(PyObject*, PyObject* const*, Py_ssize_t, PyObject*)’: 2024-06-19T11:31:20,920 src/pgenlib/pgenlib.cpp:591:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-06-19T11:31:20,920 591 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-06-19T11:31:20,920 | ^ 2024-06-19T11:31:20,920 src/pgenlib/pgenlib.cpp:38605:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-06-19T11:31:20,920 38605 | CYTHON_FALLTHROUGH; 2024-06-19T11:31:20,920 | ^~~~~~~~~~~~~~~~~~ 2024-06-19T11:31:20,925 src/pgenlib/pgenlib.cpp:591:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-06-19T11:31:20,925 591 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-06-19T11:31:20,925 | ^ 2024-06-19T11:31:20,925 src/pgenlib/pgenlib.cpp:38607:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-06-19T11:31:20,925 38607 | CYTHON_FALLTHROUGH; 2024-06-19T11:31:20,925 | ^~~~~~~~~~~~~~~~~~ 2024-06-19T11:31:20,930 src/pgenlib/pgenlib.cpp:591:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-06-19T11:31:20,930 591 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-06-19T11:31:20,930 | ^ 2024-06-19T11:31:20,930 src/pgenlib/pgenlib.cpp:38609:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-06-19T11:31:20,931 38609 | CYTHON_FALLTHROUGH; 2024-06-19T11:31:20,931 | ^~~~~~~~~~~~~~~~~~ 2024-06-19T11:31:20,936 src/pgenlib/pgenlib.cpp:591:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-06-19T11:31:20,936 591 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-06-19T11:31:20,936 | ^ 2024-06-19T11:31:20,936 src/pgenlib/pgenlib.cpp:38622:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-06-19T11:31:20,936 38622 | CYTHON_FALLTHROUGH; 2024-06-19T11:31:20,936 | ^~~~~~~~~~~~~~~~~~ 2024-06-19T11:31:20,941 src/pgenlib/pgenlib.cpp:591:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-06-19T11:31:20,941 591 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-06-19T11:31:20,941 | ^ 2024-06-19T11:31:20,942 src/pgenlib/pgenlib.cpp:38629:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-06-19T11:31:20,942 38629 | CYTHON_FALLTHROUGH; 2024-06-19T11:31:20,942 | ^~~~~~~~~~~~~~~~~~ 2024-06-19T11:31:20,947 src/pgenlib/pgenlib.cpp:591:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-06-19T11:31:20,947 591 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-06-19T11:31:20,948 | ^ 2024-06-19T11:31:20,948 src/pgenlib/pgenlib.cpp:38644:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-06-19T11:31:20,948 38644 | CYTHON_FALLTHROUGH; 2024-06-19T11:31:20,948 | ^~~~~~~~~~~~~~~~~~ 2024-06-19T11:31:20,952 src/pgenlib/pgenlib.cpp:591:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-06-19T11:31:20,953 591 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-06-19T11:31:20,953 | ^ 2024-06-19T11:31:20,953 src/pgenlib/pgenlib.cpp:38646:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-06-19T11:31:20,953 38646 | CYTHON_FALLTHROUGH; 2024-06-19T11:31:20,953 | ^~~~~~~~~~~~~~~~~~ 2024-06-19T11:31:20,980 src/pgenlib/pgenlib.cpp: In function ‘PyObject* __pyx_pw_7pgenlib_10PgenWriter_17append_partially_phased_batch(PyObject*, PyObject* const*, Py_ssize_t, PyObject*)’: 2024-06-19T11:31:20,981 src/pgenlib/pgenlib.cpp:591:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-06-19T11:31:20,981 591 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-06-19T11:31:20,981 | ^ 2024-06-19T11:31:20,981 src/pgenlib/pgenlib.cpp:39433:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-06-19T11:31:20,981 39433 | CYTHON_FALLTHROUGH; 2024-06-19T11:31:20,981 | ^~~~~~~~~~~~~~~~~~ 2024-06-19T11:31:20,986 src/pgenlib/pgenlib.cpp:591:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-06-19T11:31:20,986 591 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-06-19T11:31:20,986 | ^ 2024-06-19T11:31:20,986 src/pgenlib/pgenlib.cpp:39435:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-06-19T11:31:20,986 39435 | CYTHON_FALLTHROUGH; 2024-06-19T11:31:20,987 | ^~~~~~~~~~~~~~~~~~ 2024-06-19T11:31:20,991 src/pgenlib/pgenlib.cpp:591:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-06-19T11:31:20,991 591 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-06-19T11:31:20,992 | ^ 2024-06-19T11:31:20,992 src/pgenlib/pgenlib.cpp:39437:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-06-19T11:31:20,992 39437 | CYTHON_FALLTHROUGH; 2024-06-19T11:31:20,992 | ^~~~~~~~~~~~~~~~~~ 2024-06-19T11:31:20,997 src/pgenlib/pgenlib.cpp:591:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-06-19T11:31:20,997 591 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-06-19T11:31:20,998 | ^ 2024-06-19T11:31:20,998 src/pgenlib/pgenlib.cpp:39450:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-06-19T11:31:20,998 39450 | CYTHON_FALLTHROUGH; 2024-06-19T11:31:20,998 | ^~~~~~~~~~~~~~~~~~ 2024-06-19T11:31:21,003 src/pgenlib/pgenlib.cpp:591:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-06-19T11:31:21,004 591 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-06-19T11:31:21,004 | ^ 2024-06-19T11:31:21,004 src/pgenlib/pgenlib.cpp:39460:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-06-19T11:31:21,004 39460 | CYTHON_FALLTHROUGH; 2024-06-19T11:31:21,004 | ^~~~~~~~~~~~~~~~~~ 2024-06-19T11:31:21,010 src/pgenlib/pgenlib.cpp:591:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-06-19T11:31:21,010 591 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-06-19T11:31:21,010 | ^ 2024-06-19T11:31:21,010 src/pgenlib/pgenlib.cpp:39475:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-06-19T11:31:21,010 39475 | CYTHON_FALLTHROUGH; 2024-06-19T11:31:21,011 | ^~~~~~~~~~~~~~~~~~ 2024-06-19T11:31:21,043 src/pgenlib/pgenlib.cpp: In function ‘PyObject* __pyx_pw_7pgenlib_10PgenWriter_19append_dosages_batch(PyObject*, PyObject* const*, Py_ssize_t, PyObject*)’: 2024-06-19T11:31:21,044 src/pgenlib/pgenlib.cpp:591:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-06-19T11:31:21,044 591 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-06-19T11:31:21,044 | ^ 2024-06-19T11:31:21,044 src/pgenlib/pgenlib.cpp:40288:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-06-19T11:31:21,044 40288 | CYTHON_FALLTHROUGH; 2024-06-19T11:31:21,044 | ^~~~~~~~~~~~~~~~~~ 2024-06-19T11:31:21,083 src/pgenlib/pgenlib.cpp: In function ‘PyObject* __pyx_pw_7pgenlib_10PgenWriter_23__exit__(PyObject*, PyObject* const*, Py_ssize_t, PyObject*)’: 2024-06-19T11:31:21,083 src/pgenlib/pgenlib.cpp:591:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-06-19T11:31:21,083 591 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-06-19T11:31:21,083 | ^ 2024-06-19T11:31:21,083 src/pgenlib/pgenlib.cpp:40905:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-06-19T11:31:21,083 40905 | CYTHON_FALLTHROUGH; 2024-06-19T11:31:21,083 | ^~~~~~~~~~~~~~~~~~ 2024-06-19T11:31:21,088 src/pgenlib/pgenlib.cpp:591:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-06-19T11:31:21,088 591 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-06-19T11:31:21,088 | ^ 2024-06-19T11:31:21,089 src/pgenlib/pgenlib.cpp:40907:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-06-19T11:31:21,089 40907 | CYTHON_FALLTHROUGH; 2024-06-19T11:31:21,089 | ^~~~~~~~~~~~~~~~~~ 2024-06-19T11:31:21,094 src/pgenlib/pgenlib.cpp:591:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-06-19T11:31:21,094 591 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-06-19T11:31:21,094 | ^ 2024-06-19T11:31:21,094 src/pgenlib/pgenlib.cpp:40909:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-06-19T11:31:21,094 40909 | CYTHON_FALLTHROUGH; 2024-06-19T11:31:21,095 | ^~~~~~~~~~~~~~~~~~ 2024-06-19T11:31:21,100 src/pgenlib/pgenlib.cpp:591:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-06-19T11:31:21,100 591 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-06-19T11:31:21,100 | ^ 2024-06-19T11:31:21,101 src/pgenlib/pgenlib.cpp:40922:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-06-19T11:31:21,101 40922 | CYTHON_FALLTHROUGH; 2024-06-19T11:31:21,101 | ^~~~~~~~~~~~~~~~~~ 2024-06-19T11:31:21,106 src/pgenlib/pgenlib.cpp:591:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-06-19T11:31:21,107 591 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-06-19T11:31:21,107 | ^ 2024-06-19T11:31:21,107 src/pgenlib/pgenlib.cpp:40932:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-06-19T11:31:21,107 40932 | CYTHON_FALLTHROUGH; 2024-06-19T11:31:21,107 | ^~~~~~~~~~~~~~~~~~ 2024-06-19T11:31:21,120 src/pgenlib/pgenlib.cpp: In function ‘PyObject* __pyx_pw_7pgenlib_10PgenWriter_29__setstate_cython__(PyObject*, PyObject* const*, Py_ssize_t, PyObject*)’: 2024-06-19T11:31:21,121 src/pgenlib/pgenlib.cpp:591:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-06-19T11:31:21,121 591 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-06-19T11:31:21,121 | ^ 2024-06-19T11:31:21,121 src/pgenlib/pgenlib.cpp:41343:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-06-19T11:31:21,121 41343 | CYTHON_FALLTHROUGH; 2024-06-19T11:31:21,121 | ^~~~~~~~~~~~~~~~~~ 2024-06-19T11:31:21,301 src/pgenlib/pgenlib.cpp: In function ‘const char* __Pyx_BufFmt_CheckString(__Pyx_BufFmt_Context*, const char*)’: 2024-06-19T11:31:21,301 src/pgenlib/pgenlib.cpp:591:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-06-19T11:31:21,301 591 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-06-19T11:31:21,301 | ^ 2024-06-19T11:31:21,301 src/pgenlib/pgenlib.cpp:46440:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-06-19T11:31:21,302 46440 | CYTHON_FALLTHROUGH; 2024-06-19T11:31:21,302 | ^~~~~~~~~~~~~~~~~~ 2024-06-19T11:31:21,307 src/pgenlib/pgenlib.cpp:591:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-06-19T11:31:21,308 591 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-06-19T11:31:21,308 | ^ 2024-06-19T11:31:21,308 src/pgenlib/pgenlib.cpp:46453:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-06-19T11:31:21,308 46453 | CYTHON_FALLTHROUGH; 2024-06-19T11:31:21,308 | ^~~~~~~~~~~~~~~~~~ 2024-06-19T11:31:21,319 src/pgenlib/pgenlib.cpp: In function ‘PyObject* __Pyx_PyInt_MultiplyCObj(PyObject*, PyObject*, long int, int, int)’: 2024-06-19T11:31:21,319 src/pgenlib/pgenlib.cpp:591:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-06-19T11:31:21,319 591 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-06-19T11:31:21,320 | ^ 2024-06-19T11:31:21,320 src/pgenlib/pgenlib.cpp:46581:21: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-06-19T11:31:21,320 46581 | CYTHON_FALLTHROUGH; 2024-06-19T11:31:21,320 | ^~~~~~~~~~~~~~~~~~ 2024-06-19T11:31:21,326 src/pgenlib/pgenlib.cpp:591:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-06-19T11:31:21,326 591 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-06-19T11:31:21,326 | ^ 2024-06-19T11:31:21,326 src/pgenlib/pgenlib.cpp:46592:21: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-06-19T11:31:21,326 46592 | CYTHON_FALLTHROUGH; 2024-06-19T11:31:21,326 | ^~~~~~~~~~~~~~~~~~ 2024-06-19T11:31:21,333 src/pgenlib/pgenlib.cpp:591:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-06-19T11:31:21,333 591 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-06-19T11:31:21,333 | ^ 2024-06-19T11:31:21,333 src/pgenlib/pgenlib.cpp:46603:21: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-06-19T11:31:21,333 46603 | CYTHON_FALLTHROUGH; 2024-06-19T11:31:21,333 | ^~~~~~~~~~~~~~~~~~ 2024-06-19T11:31:21,339 src/pgenlib/pgenlib.cpp:591:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-06-19T11:31:21,340 591 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-06-19T11:31:21,340 | ^ 2024-06-19T11:31:21,340 src/pgenlib/pgenlib.cpp:46614:21: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-06-19T11:31:21,340 46614 | CYTHON_FALLTHROUGH; 2024-06-19T11:31:21,340 | ^~~~~~~~~~~~~~~~~~ 2024-06-19T11:31:21,346 src/pgenlib/pgenlib.cpp:591:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-06-19T11:31:21,347 591 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-06-19T11:31:21,347 | ^ 2024-06-19T11:31:21,347 src/pgenlib/pgenlib.cpp:46625:21: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-06-19T11:31:21,347 46625 | CYTHON_FALLTHROUGH; 2024-06-19T11:31:21,347 | ^~~~~~~~~~~~~~~~~~ 2024-06-19T11:31:21,353 src/pgenlib/pgenlib.cpp:591:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-06-19T11:31:21,353 591 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-06-19T11:31:21,354 | ^ 2024-06-19T11:31:21,354 src/pgenlib/pgenlib.cpp:46636:21: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-06-19T11:31:21,354 46636 | CYTHON_FALLTHROUGH; 2024-06-19T11:31:21,354 | ^~~~~~~~~~~~~~~~~~ 2024-06-19T11:31:21,366 src/pgenlib/pgenlib.cpp: In function ‘PyObject* __Pyx_PyInt_AddObjC(PyObject*, PyObject*, long int, int, int)’: 2024-06-19T11:31:21,367 src/pgenlib/pgenlib.cpp:591:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-06-19T11:31:21,367 591 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-06-19T11:31:21,367 | ^ 2024-06-19T11:31:21,367 src/pgenlib/pgenlib.cpp:46814:21: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-06-19T11:31:21,367 46814 | CYTHON_FALLTHROUGH; 2024-06-19T11:31:21,367 | ^~~~~~~~~~~~~~~~~~ 2024-06-19T11:31:21,373 src/pgenlib/pgenlib.cpp:591:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-06-19T11:31:21,373 591 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-06-19T11:31:21,373 | ^ 2024-06-19T11:31:21,373 src/pgenlib/pgenlib.cpp:46825:21: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-06-19T11:31:21,373 46825 | CYTHON_FALLTHROUGH; 2024-06-19T11:31:21,373 | ^~~~~~~~~~~~~~~~~~ 2024-06-19T11:31:21,379 src/pgenlib/pgenlib.cpp:591:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-06-19T11:31:21,380 591 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-06-19T11:31:21,380 | ^ 2024-06-19T11:31:21,380 src/pgenlib/pgenlib.cpp:46836:21: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-06-19T11:31:21,380 46836 | CYTHON_FALLTHROUGH; 2024-06-19T11:31:21,380 | ^~~~~~~~~~~~~~~~~~ 2024-06-19T11:31:21,386 src/pgenlib/pgenlib.cpp:591:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-06-19T11:31:21,386 591 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-06-19T11:31:21,387 | ^ 2024-06-19T11:31:21,387 src/pgenlib/pgenlib.cpp:46847:21: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-06-19T11:31:21,387 46847 | CYTHON_FALLTHROUGH; 2024-06-19T11:31:21,387 | ^~~~~~~~~~~~~~~~~~ 2024-06-19T11:31:21,393 src/pgenlib/pgenlib.cpp:591:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-06-19T11:31:21,393 591 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-06-19T11:31:21,394 | ^ 2024-06-19T11:31:21,394 src/pgenlib/pgenlib.cpp:46858:21: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-06-19T11:31:21,394 46858 | CYTHON_FALLTHROUGH; 2024-06-19T11:31:21,394 | ^~~~~~~~~~~~~~~~~~ 2024-06-19T11:31:21,400 src/pgenlib/pgenlib.cpp:591:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-06-19T11:31:21,400 591 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-06-19T11:31:21,400 | ^ 2024-06-19T11:31:21,401 src/pgenlib/pgenlib.cpp:46869:21: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-06-19T11:31:21,401 46869 | CYTHON_FALLTHROUGH; 2024-06-19T11:31:21,401 | ^~~~~~~~~~~~~~~~~~ 2024-06-19T11:32:08,124 At global scope: 2024-06-19T11:32:08,124 cc1plus: note: unrecognized command-line option ‘-Wno-macro-redefined’ may have been intended to silence earlier diagnostics 2024-06-19T11:32:11,229 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Isrc/pgenlib -I/tmp/pip-build-env-dgfm29g5/overlay/lib/python3.9/site-packages/numpy/_core/include -Isrc/plink2/libdeflate -I/usr/include/python3.9 -c src/plink2/include/pgenlib_misc.cc -o build/temp.linux-armv7l-cpython-39/src/plink2/include/pgenlib_misc.o -std=c++98 -Wno-unused-function -Wno-macro-redefined -DZSTD_DISABLE_ASM -DLIBDEFLATE_STATIC 2024-06-19T11:32:14,787 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Isrc/pgenlib -I/tmp/pip-build-env-dgfm29g5/overlay/lib/python3.9/site-packages/numpy/_core/include -Isrc/plink2/libdeflate -I/usr/include/python3.9 -c src/plink2/include/pgenlib_read.cc -o build/temp.linux-armv7l-cpython-39/src/plink2/include/pgenlib_read.o -std=c++98 -Wno-unused-function -Wno-macro-redefined -DZSTD_DISABLE_ASM -DLIBDEFLATE_STATIC 2024-06-19T11:32:28,786 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Isrc/pgenlib -I/tmp/pip-build-env-dgfm29g5/overlay/lib/python3.9/site-packages/numpy/_core/include -Isrc/plink2/libdeflate -I/usr/include/python3.9 -c src/plink2/include/pgenlib_write.cc -o build/temp.linux-armv7l-cpython-39/src/plink2/include/pgenlib_write.o -std=c++98 -Wno-unused-function -Wno-macro-redefined -DZSTD_DISABLE_ASM -DLIBDEFLATE_STATIC 2024-06-19T11:32:32,224 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Isrc/pgenlib -I/tmp/pip-build-env-dgfm29g5/overlay/lib/python3.9/site-packages/numpy/_core/include -Isrc/plink2/libdeflate -I/usr/include/python3.9 -c src/plink2/include/plink2_base.cc -o build/temp.linux-armv7l-cpython-39/src/plink2/include/plink2_base.o -std=c++98 -Wno-unused-function -Wno-macro-redefined -DZSTD_DISABLE_ASM -DLIBDEFLATE_STATIC 2024-06-19T11:32:32,752 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Isrc/pgenlib -I/tmp/pip-build-env-dgfm29g5/overlay/lib/python3.9/site-packages/numpy/_core/include -Isrc/plink2/libdeflate -I/usr/include/python3.9 -c src/plink2/include/plink2_bgzf.cc -o build/temp.linux-armv7l-cpython-39/src/plink2/include/plink2_bgzf.o -std=c++98 -Wno-unused-function -Wno-macro-redefined -DZSTD_DISABLE_ASM -DLIBDEFLATE_STATIC 2024-06-19T11:32:34,072 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Isrc/pgenlib -I/tmp/pip-build-env-dgfm29g5/overlay/lib/python3.9/site-packages/numpy/_core/include -Isrc/plink2/libdeflate -I/usr/include/python3.9 -c src/plink2/include/plink2_bits.cc -o build/temp.linux-armv7l-cpython-39/src/plink2/include/plink2_bits.o -std=c++98 -Wno-unused-function -Wno-macro-redefined -DZSTD_DISABLE_ASM -DLIBDEFLATE_STATIC 2024-06-19T11:32:35,889 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Isrc/pgenlib -I/tmp/pip-build-env-dgfm29g5/overlay/lib/python3.9/site-packages/numpy/_core/include -Isrc/plink2/libdeflate -I/usr/include/python3.9 -c src/plink2/include/plink2_string.cc -o build/temp.linux-armv7l-cpython-39/src/plink2/include/plink2_string.o -std=c++98 -Wno-unused-function -Wno-macro-redefined -DZSTD_DISABLE_ASM -DLIBDEFLATE_STATIC 2024-06-19T11:32:41,563 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Isrc/pgenlib -I/tmp/pip-build-env-dgfm29g5/overlay/lib/python3.9/site-packages/numpy/_core/include -Isrc/plink2/libdeflate -I/usr/include/python3.9 -c src/plink2/include/plink2_text.cc -o build/temp.linux-armv7l-cpython-39/src/plink2/include/plink2_text.o -std=c++98 -Wno-unused-function -Wno-macro-redefined -DZSTD_DISABLE_ASM -DLIBDEFLATE_STATIC 2024-06-19T11:32:43,298 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Isrc/pgenlib -I/tmp/pip-build-env-dgfm29g5/overlay/lib/python3.9/site-packages/numpy/_core/include -Isrc/plink2/libdeflate -I/usr/include/python3.9 -c src/plink2/include/plink2_thread.cc -o build/temp.linux-armv7l-cpython-39/src/plink2/include/plink2_thread.o -std=c++98 -Wno-unused-function -Wno-macro-redefined -DZSTD_DISABLE_ASM -DLIBDEFLATE_STATIC 2024-06-19T11:32:43,804 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Isrc/pgenlib -I/tmp/pip-build-env-dgfm29g5/overlay/lib/python3.9/site-packages/numpy/_core/include -Isrc/plink2/libdeflate -I/usr/include/python3.9 -c src/plink2/include/plink2_zstfile.cc -o build/temp.linux-armv7l-cpython-39/src/plink2/include/plink2_zstfile.o -std=c++98 -Wno-unused-function -Wno-macro-redefined -DZSTD_DISABLE_ASM -DLIBDEFLATE_STATIC 2024-06-19T11:32:44,164 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Isrc/pgenlib -I/tmp/pip-build-env-dgfm29g5/overlay/lib/python3.9/site-packages/numpy/_core/include -Isrc/plink2/libdeflate -I/usr/include/python3.9 -c src/plink2/pgenlib_ffi_support.cc -o build/temp.linux-armv7l-cpython-39/src/plink2/pgenlib_ffi_support.o -std=c++98 -Wno-unused-function -Wno-macro-redefined -DZSTD_DISABLE_ASM -DLIBDEFLATE_STATIC 2024-06-19T11:32:45,507 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Isrc/pgenlib -I/tmp/pip-build-env-dgfm29g5/overlay/lib/python3.9/site-packages/numpy/_core/include -Isrc/plink2/libdeflate -I/usr/include/python3.9 -c src/plink2/pvar_ffi_support.cc -o build/temp.linux-armv7l-cpython-39/src/plink2/pvar_ffi_support.o -std=c++98 -Wno-unused-function -Wno-macro-redefined -DZSTD_DISABLE_ASM -DLIBDEFLATE_STATIC 2024-06-19T11:32:46,732 creating build/lib.linux-armv7l-cpython-39 2024-06-19T11:32:46,733 arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/src/pgenlib/pgenlib.o build/temp.linux-armv7l-cpython-39/src/plink2/include/pgenlib_misc.o build/temp.linux-armv7l-cpython-39/src/plink2/include/pgenlib_read.o build/temp.linux-armv7l-cpython-39/src/plink2/include/pgenlib_write.o build/temp.linux-armv7l-cpython-39/src/plink2/include/plink2_base.o build/temp.linux-armv7l-cpython-39/src/plink2/include/plink2_bgzf.o build/temp.linux-armv7l-cpython-39/src/plink2/include/plink2_bits.o build/temp.linux-armv7l-cpython-39/src/plink2/include/plink2_string.o build/temp.linux-armv7l-cpython-39/src/plink2/include/plink2_text.o build/temp.linux-armv7l-cpython-39/src/plink2/include/plink2_thread.o build/temp.linux-armv7l-cpython-39/src/plink2/include/plink2_zstfile.o build/temp.linux-armv7l-cpython-39/src/plink2/pgenlib_ffi_support.o build/temp.linux-armv7l-cpython-39/src/plink2/pvar_ffi_support.o -L/usr/lib -Lbuild/temp.linux-armv7l-cpython-39 -lclib -o build/lib.linux-armv7l-cpython-39/pgenlib.cpython-39-arm-linux-gnueabihf.so -std=c++98 -lz 2024-06-19T11:32:47,407 installing to build/bdist.linux-armv7l/wheel 2024-06-19T11:32:47,408 running install 2024-06-19T11:32:47,433 running install_lib 2024-06-19T11:32:47,441 creating build/bdist.linux-armv7l 2024-06-19T11:32:47,442 creating build/bdist.linux-armv7l/wheel 2024-06-19T11:32:47,443 copying build/lib.linux-armv7l-cpython-39/pgenlib.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel 2024-06-19T11:32:47,543 running install_egg_info 2024-06-19T11:32:47,554 running egg_info 2024-06-19T11:32:47,559 writing src/Pgenlib.egg-info/PKG-INFO 2024-06-19T11:32:47,562 writing dependency_links to src/Pgenlib.egg-info/dependency_links.txt 2024-06-19T11:32:47,564 writing requirements to src/Pgenlib.egg-info/requires.txt 2024-06-19T11:32:47,565 writing top-level names to src/Pgenlib.egg-info/top_level.txt 2024-06-19T11:32:47,569 dependency /tmp/pip-build-env-dgfm29g5/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative 2024-06-19T11:32:47,569 dependency /tmp/pip-build-env-dgfm29g5/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative 2024-06-19T11:32:47,569 dependency /tmp/pip-build-env-dgfm29g5/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative 2024-06-19T11:32:47,569 dependency /tmp/pip-build-env-dgfm29g5/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative 2024-06-19T11:32:47,569 dependency /tmp/pip-build-env-dgfm29g5/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative 2024-06-19T11:32:47,582 reading manifest file 'src/Pgenlib.egg-info/SOURCES.txt' 2024-06-19T11:32:47,600 reading manifest template 'MANIFEST.in' 2024-06-19T11:32:47,610 adding license file 'LICENSE' 2024-06-19T11:32:47,620 writing manifest file 'src/Pgenlib.egg-info/SOURCES.txt' 2024-06-19T11:32:47,622 Copying src/Pgenlib.egg-info to build/bdist.linux-armv7l/wheel/Pgenlib-0.91.0-py3.9.egg-info 2024-06-19T11:32:47,632 running install_scripts 2024-06-19T11:32:47,676 creating build/bdist.linux-armv7l/wheel/Pgenlib-0.91.0.dist-info/WHEEL 2024-06-19T11:32:47,678 creating '/tmp/pip-wheel-y5aju33j/.tmp-rgrnamtv/Pgenlib-0.91.0-cp39-cp39-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2024-06-19T11:32:48,781 adding 'pgenlib.cpython-39-arm-linux-gnueabihf.so' 2024-06-19T11:32:48,821 adding 'Pgenlib-0.91.0.dist-info/LICENSE' 2024-06-19T11:32:48,822 adding 'Pgenlib-0.91.0.dist-info/METADATA' 2024-06-19T11:32:48,823 adding 'Pgenlib-0.91.0.dist-info/WHEEL' 2024-06-19T11:32:48,824 adding 'Pgenlib-0.91.0.dist-info/top_level.txt' 2024-06-19T11:32:48,825 adding 'Pgenlib-0.91.0.dist-info/RECORD' 2024-06-19T11:32:48,850 removing build/bdist.linux-armv7l/wheel 2024-06-19T11:32:48,997 Building wheel for pgenlib (pyproject.toml): finished with status 'done' 2024-06-19T11:32:49,050 Created wheel for pgenlib: filename=Pgenlib-0.91.0-cp39-cp39-linux_armv7l.whl size=2137981 sha256=840b10590796167592e1cd2c78eee12b0fdf710fff1b96dc57510a095c565080 2024-06-19T11:32:49,051 Stored in directory: /tmp/pip-ephem-wheel-cache-yjnj3egx/wheels/0f/a3/9c/3d05184a22f94d18bb75e660359c04994cf1c5ab7a47382ef0 2024-06-19T11:32:49,063 Successfully built pgenlib 2024-06-19T11:32:49,123 Removed build tracker: '/tmp/pip-build-tracker-01ndojv1'