2024-06-22T02:06:36,135 Created temporary directory: /tmp/pip-build-tracker-o5s_9d02 2024-06-22T02:06:36,136 Initialized build tracking at /tmp/pip-build-tracker-o5s_9d02 2024-06-22T02:06:36,137 Created build tracker: /tmp/pip-build-tracker-o5s_9d02 2024-06-22T02:06:36,137 Entered build tracker: /tmp/pip-build-tracker-o5s_9d02 2024-06-22T02:06:36,138 Created temporary directory: /tmp/pip-wheel-ylym328_ 2024-06-22T02:06:36,141 Created temporary directory: /tmp/pip-ephem-wheel-cache-01mpsakm 2024-06-22T02:06:36,163 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2024-06-22T02:06:36,166 2 location(s) to search for versions of sweep: 2024-06-22T02:06:36,166 * https://pypi.org/simple/sweep/ 2024-06-22T02:06:36,166 * https://www.piwheels.org/simple/sweep/ 2024-06-22T02:06:36,167 Fetching project page and analyzing links: https://pypi.org/simple/sweep/ 2024-06-22T02:06:36,168 Getting page https://pypi.org/simple/sweep/ 2024-06-22T02:06:36,169 Found index url https://pypi.org/simple/ 2024-06-22T02:06:36,382 Fetched page https://pypi.org/simple/sweep/ as application/vnd.pypi.simple.v1+json 2024-06-22T02:06:36,386 Skipping link: No binaries permitted for sweep: https://files.pythonhosted.org/packages/bc/7d/6b80824ddc643a591371114167d879e11c4e89eebc29e3676f7d47a8d7c1/sweep-1.0.0.0-py3-none-any.whl (from https://pypi.org/simple/sweep/) 2024-06-22T02:06:36,387 Skipping link: No binaries permitted for sweep: https://files.pythonhosted.org/packages/53/97/2962b4489c877e4a0e1869e35af855a55ebcb51edc84033c69d7f4194f8e/sweep-1.0.0.1-py3-none-any.whl (from https://pypi.org/simple/sweep/) 2024-06-22T02:06:36,387 Skipping link: No binaries permitted for sweep: https://files.pythonhosted.org/packages/4f/c4/6305a0f518e47e0c44dbf072f22acd087659e1e8a3089a38399dfbdaa0f1/sweep-1.1.0.0-py3-none-any.whl (from https://pypi.org/simple/sweep/) 2024-06-22T02:06:36,388 Skipping link: No binaries permitted for sweep: https://files.pythonhosted.org/packages/26/c8/314dc0810731c3863dab9781dc2b7df50a893ef3ee665d10f2a685b6bb29/sweep-1.2.0.0-py3-none-any.whl (from https://pypi.org/simple/sweep/) 2024-06-22T02:06:36,388 Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/f7/c5/5134bc24236ba033f2e080cdbd7a992b60bd486db42b4f244e7081105791/sweep-1.3.0.0-py3.8.egg (from https://pypi.org/simple/sweep/) 2024-06-22T02:06:36,389 Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/83/71/91cdacdf8c3126c256aa94026b8404e0892344c2b4917a17478a9db438c3/sweep-2.0.0.0-py3.10.egg (from https://pypi.org/simple/sweep/) 2024-06-22T02:06:36,389 Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/18/74/a42582982dca2855db56241fdb2001fd124f876fda2c460f3bd879a34477/sweep-2.0.0.1-py3.10.egg (from https://pypi.org/simple/sweep/) 2024-06-22T02:06:36,390 Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/8b/5a/100dccbabaf90f2e6cd34208c2df17137345219f39d033c9d18149d5589e/sweep-2.0.0.2-py3.10.egg (from https://pypi.org/simple/sweep/) 2024-06-22T02:06:36,391 Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/d7/28/7efe0cfe970d4d44bc51fc8b6221a8b6bb67d14b0801f5a15e6f8534a61c/sweep-2.0.1.0-py3.10.egg (from https://pypi.org/simple/sweep/) 2024-06-22T02:06:36,391 Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/a2/bb/316a96f8bc95a0516bdc6364dc1c9e15c94faba23faa70f11c2613a051f6/sweep-2.0.1.1-py3.10.egg (from https://pypi.org/simple/sweep/) 2024-06-22T02:06:36,392 Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/b8/a7/efed8f00c71f77ec6db14ad845e7d95b24a299f60121b874d03725f02c39/sweep-2.0.1.2-py3.10.egg (from https://pypi.org/simple/sweep/) 2024-06-22T02:06:36,392 Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/45/b8/adcdb395dd1cf7eee371a77ef11c138a2ea9ad1146b8b4fe457f655a71ee/sweep-2.0.1.3-py3.10.egg (from https://pypi.org/simple/sweep/) 2024-06-22T02:06:36,393 Skipping link: No binaries permitted for sweep: https://files.pythonhosted.org/packages/cb/f1/d8024ece1119e76cec5895025462d8a4fd1910cb4d643a8bcac152630c37/sweep-2.0.1.4-py3-none-any.whl (from https://pypi.org/simple/sweep/) 2024-06-22T02:06:36,394 Found link https://files.pythonhosted.org/packages/8a/31/d5dc40aba3c8dd0b190d566d8b6e567f88844477143310308bec52cb2959/sweep-2.0.1.4.tar.gz (from https://pypi.org/simple/sweep/), version: 2.0.1.4 2024-06-22T02:06:36,395 Skipping link: No binaries permitted for sweep: https://files.pythonhosted.org/packages/b6/55/5319be62e41815d1cd4a39fc72946753de4307a64e6e1c316718c3de8e64/sweep-2.1.1.4-py3-none-any.whl (from https://pypi.org/simple/sweep/) 2024-06-22T02:06:36,395 Found link https://files.pythonhosted.org/packages/f2/4b/ebb3b2141ae62ba13fa2525d3f4b4b9e3cdc5ef2fc2a71809edf8d09daca/sweep-2.1.1.4.tar.gz (from https://pypi.org/simple/sweep/), version: 2.1.1.4 2024-06-22T02:06:36,396 Fetching project page and analyzing links: https://www.piwheels.org/simple/sweep/ 2024-06-22T02:06:36,396 Getting page https://www.piwheels.org/simple/sweep/ 2024-06-22T02:06:36,397 Found index url https://www.piwheels.org/simple/ 2024-06-22T02:06:36,566 Fetched page https://www.piwheels.org/simple/sweep/ as text/html 2024-06-22T02:06:36,567 Skipping link: No binaries permitted for sweep: https://www.piwheels.org/simple/sweep/sweep-2.0.1.4-py3-none-any.whl#sha256=c027ba221d79af836ce7b1f6020422b7a62efd0fb20d11c353c7f23568afe6fe (from https://www.piwheels.org/simple/sweep/) 2024-06-22T02:06:36,568 Skipping link: not a file: https://www.piwheels.org/simple/sweep/ 2024-06-22T02:06:36,569 Skipping link: not a file: https://pypi.org/simple/sweep/ 2024-06-22T02:06:36,589 Given no hashes to check 1 links for project 'sweep': discarding no candidates 2024-06-22T02:06:36,609 Collecting sweep==2.1.1.4 2024-06-22T02:06:36,611 Created temporary directory: /tmp/pip-unpack-kto50zxg 2024-06-22T02:06:36,824 Downloading sweep-2.1.1.4.tar.gz (13 kB) 2024-06-22T02:06:36,884 Added sweep==2.1.1.4 from https://files.pythonhosted.org/packages/f2/4b/ebb3b2141ae62ba13fa2525d3f4b4b9e3cdc5ef2fc2a71809edf8d09daca/sweep-2.1.1.4.tar.gz to build tracker '/tmp/pip-build-tracker-o5s_9d02' 2024-06-22T02:06:36,887 Running setup.py (path:/tmp/pip-wheel-ylym328_/sweep_9d7ca0102e1d4a1fac0b5986748d309d/setup.py) egg_info for package sweep 2024-06-22T02:06:36,887 Created temporary directory: /tmp/pip-pip-egg-info-8t8mpcq0 2024-06-22T02:06:36,888 Preparing metadata (setup.py): started 2024-06-22T02:06:36,889 Running command python setup.py egg_info 2024-06-22T02:06:37,833 running egg_info 2024-06-22T02:06:37,835 creating /tmp/pip-pip-egg-info-8t8mpcq0/sweep.egg-info 2024-06-22T02:06:37,860 writing /tmp/pip-pip-egg-info-8t8mpcq0/sweep.egg-info/PKG-INFO 2024-06-22T02:06:37,864 writing dependency_links to /tmp/pip-pip-egg-info-8t8mpcq0/sweep.egg-info/dependency_links.txt 2024-06-22T02:06:37,866 writing requirements to /tmp/pip-pip-egg-info-8t8mpcq0/sweep.egg-info/requires.txt 2024-06-22T02:06:37,867 writing top-level names to /tmp/pip-pip-egg-info-8t8mpcq0/sweep.egg-info/top_level.txt 2024-06-22T02:06:37,868 writing manifest file '/tmp/pip-pip-egg-info-8t8mpcq0/sweep.egg-info/SOURCES.txt' 2024-06-22T02:06:37,953 reading manifest file '/tmp/pip-pip-egg-info-8t8mpcq0/sweep.egg-info/SOURCES.txt' 2024-06-22T02:06:37,956 writing manifest file '/tmp/pip-pip-egg-info-8t8mpcq0/sweep.egg-info/SOURCES.txt' 2024-06-22T02:06:38,063 Preparing metadata (setup.py): finished with status 'done' 2024-06-22T02:06:38,068 Source in /tmp/pip-wheel-ylym328_/sweep_9d7ca0102e1d4a1fac0b5986748d309d has version 2.1.1.4, which satisfies requirement sweep==2.1.1.4 from https://files.pythonhosted.org/packages/f2/4b/ebb3b2141ae62ba13fa2525d3f4b4b9e3cdc5ef2fc2a71809edf8d09daca/sweep-2.1.1.4.tar.gz 2024-06-22T02:06:38,069 Removed sweep==2.1.1.4 from https://files.pythonhosted.org/packages/f2/4b/ebb3b2141ae62ba13fa2525d3f4b4b9e3cdc5ef2fc2a71809edf8d09daca/sweep-2.1.1.4.tar.gz from build tracker '/tmp/pip-build-tracker-o5s_9d02' 2024-06-22T02:06:38,074 Created temporary directory: /tmp/pip-unpack-sd055i08 2024-06-22T02:06:38,075 Created temporary directory: /tmp/pip-unpack-1x6tsbu4 2024-06-22T02:06:38,084 Building wheels for collected packages: sweep 2024-06-22T02:06:38,088 Created temporary directory: /tmp/pip-wheel-f0mrqo_2 2024-06-22T02:06:38,088 Building wheel for sweep (setup.py): started 2024-06-22T02:06:38,089 Destination directory: /tmp/pip-wheel-f0mrqo_2 2024-06-22T02:06:38,090 Running command python setup.py bdist_wheel 2024-06-22T02:06:38,944 running bdist_wheel 2024-06-22T02:06:39,076 running build 2024-06-22T02:06:39,077 running build_py 2024-06-22T02:06:39,105 creating build 2024-06-22T02:06:39,105 creating build/lib 2024-06-22T02:06:39,106 creating build/lib/sweep 2024-06-22T02:06:39,107 copying sweep/default_proj_mat_ope.py -> build/lib/sweep 2024-06-22T02:06:39,109 copying sweep/calc_proj_mat_size.py -> build/lib/sweep 2024-06-22T02:06:39,111 copying sweep/orthbase.py -> build/lib/sweep 2024-06-22T02:06:39,112 copying sweep/__init__.py -> build/lib/sweep 2024-06-22T02:06:39,114 copying sweep/is_orthonormal.py -> build/lib/sweep 2024-06-22T02:06:39,115 copying sweep/fas2sweep.py -> build/lib/sweep 2024-06-22T02:06:39,118 creating build/lib/sweep/utilities 2024-06-22T02:06:39,119 copying sweep/utilities/fasta_tools.py -> build/lib/sweep/utilities 2024-06-22T02:06:39,120 copying sweep/utilities/__init__.py -> build/lib/sweep/utilities 2024-06-22T02:06:39,122 copying sweep/utilities/tree_tools.py -> build/lib/sweep/utilities 2024-06-22T02:06:39,124 creating build/lib/sweep/sweep_support 2024-06-22T02:06:39,125 copying sweep/sweep_support/mask2vec_count.py -> build/lib/sweep/sweep_support 2024-06-22T02:06:39,127 copying sweep/sweep_support/ij2inds.py -> build/lib/sweep/sweep_support 2024-06-22T02:06:39,128 copying sweep/sweep_support/nt2int.py -> build/lib/sweep/sweep_support 2024-06-22T02:06:39,130 copying sweep/sweep_support/seq2list.py -> build/lib/sweep/sweep_support 2024-06-22T02:06:39,131 copying sweep/sweep_support/generate_chunk.py -> build/lib/sweep/sweep_support 2024-06-22T02:06:39,132 copying sweep/sweep_support/orth.py -> build/lib/sweep/sweep_support 2024-06-22T02:06:39,134 copying sweep/sweep_support/aa2idx.py -> build/lib/sweep/sweep_support 2024-06-22T02:06:39,135 copying sweep/sweep_support/__init__.py -> build/lib/sweep/sweep_support 2024-06-22T02:06:39,137 copying sweep/sweep_support/mask2vec_bin.py -> build/lib/sweep/sweep_support 2024-06-22T02:06:39,138 copying sweep/sweep_support/aa2int.py -> build/lib/sweep/sweep_support 2024-06-22T02:06:39,139 running egg_info 2024-06-22T02:06:39,165 writing sweep.egg-info/PKG-INFO 2024-06-22T02:06:39,168 writing dependency_links to sweep.egg-info/dependency_links.txt 2024-06-22T02:06:39,170 writing requirements to sweep.egg-info/requires.txt 2024-06-22T02:06:39,171 writing top-level names to sweep.egg-info/top_level.txt 2024-06-22T02:06:39,201 reading manifest file 'sweep.egg-info/SOURCES.txt' 2024-06-22T02:06:39,205 writing manifest file 'sweep.egg-info/SOURCES.txt' 2024-06-22T02:06:39,234 /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. 2024-06-22T02:06:39,235 !! 2024-06-22T02:06:39,236 ******************************************************************************** 2024-06-22T02:06:39,237 Please avoid running ``setup.py`` directly. 2024-06-22T02:06:39,237 Instead, use pypa/build, pypa/installer or other 2024-06-22T02:06:39,238 standards-based tools. 2024-06-22T02:06:39,239 See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. 2024-06-22T02:06:39,240 ******************************************************************************** 2024-06-22T02:06:39,241 !! 2024-06-22T02:06:39,242 self.initialize_options() 2024-06-22T02:06:39,260 installing to build/bdist.linux-armv7l/wheel 2024-06-22T02:06:39,261 running install 2024-06-22T02:06:39,285 running install_lib 2024-06-22T02:06:39,311 creating build/bdist.linux-armv7l 2024-06-22T02:06:39,311 creating build/bdist.linux-armv7l/wheel 2024-06-22T02:06:39,312 creating build/bdist.linux-armv7l/wheel/sweep 2024-06-22T02:06:39,313 copying build/lib/sweep/default_proj_mat_ope.py -> build/bdist.linux-armv7l/wheel/sweep 2024-06-22T02:06:39,315 copying build/lib/sweep/calc_proj_mat_size.py -> build/bdist.linux-armv7l/wheel/sweep 2024-06-22T02:06:39,317 copying build/lib/sweep/orthbase.py -> build/bdist.linux-armv7l/wheel/sweep 2024-06-22T02:06:39,319 creating build/bdist.linux-armv7l/wheel/sweep/utilities 2024-06-22T02:06:39,320 copying build/lib/sweep/utilities/fasta_tools.py -> build/bdist.linux-armv7l/wheel/sweep/utilities 2024-06-22T02:06:39,321 copying build/lib/sweep/utilities/__init__.py -> build/bdist.linux-armv7l/wheel/sweep/utilities 2024-06-22T02:06:39,323 copying build/lib/sweep/utilities/tree_tools.py -> build/bdist.linux-armv7l/wheel/sweep/utilities 2024-06-22T02:06:39,325 creating build/bdist.linux-armv7l/wheel/sweep/sweep_support 2024-06-22T02:06:39,326 copying build/lib/sweep/sweep_support/mask2vec_count.py -> build/bdist.linux-armv7l/wheel/sweep/sweep_support 2024-06-22T02:06:39,328 copying build/lib/sweep/sweep_support/ij2inds.py -> build/bdist.linux-armv7l/wheel/sweep/sweep_support 2024-06-22T02:06:39,329 copying build/lib/sweep/sweep_support/nt2int.py -> build/bdist.linux-armv7l/wheel/sweep/sweep_support 2024-06-22T02:06:39,331 copying build/lib/sweep/sweep_support/seq2list.py -> build/bdist.linux-armv7l/wheel/sweep/sweep_support 2024-06-22T02:06:39,333 copying build/lib/sweep/sweep_support/generate_chunk.py -> build/bdist.linux-armv7l/wheel/sweep/sweep_support 2024-06-22T02:06:39,334 copying build/lib/sweep/sweep_support/orth.py -> build/bdist.linux-armv7l/wheel/sweep/sweep_support 2024-06-22T02:06:39,336 copying build/lib/sweep/sweep_support/aa2idx.py -> build/bdist.linux-armv7l/wheel/sweep/sweep_support 2024-06-22T02:06:39,337 copying build/lib/sweep/sweep_support/__init__.py -> build/bdist.linux-armv7l/wheel/sweep/sweep_support 2024-06-22T02:06:39,339 copying build/lib/sweep/sweep_support/mask2vec_bin.py -> build/bdist.linux-armv7l/wheel/sweep/sweep_support 2024-06-22T02:06:39,340 copying build/lib/sweep/sweep_support/aa2int.py -> build/bdist.linux-armv7l/wheel/sweep/sweep_support 2024-06-22T02:06:39,342 copying build/lib/sweep/__init__.py -> build/bdist.linux-armv7l/wheel/sweep 2024-06-22T02:06:39,344 copying build/lib/sweep/is_orthonormal.py -> build/bdist.linux-armv7l/wheel/sweep 2024-06-22T02:06:39,345 copying build/lib/sweep/fas2sweep.py -> build/bdist.linux-armv7l/wheel/sweep 2024-06-22T02:06:39,347 running install_egg_info 2024-06-22T02:06:39,381 Copying sweep.egg-info to build/bdist.linux-armv7l/wheel/sweep-2.1.1.4-py3.11.egg-info 2024-06-22T02:06:39,392 running install_scripts 2024-06-22T02:06:39,405 creating build/bdist.linux-armv7l/wheel/sweep-2.1.1.4.dist-info/WHEEL 2024-06-22T02:06:39,407 creating '/tmp/pip-wheel-f0mrqo_2/sweep-2.1.1.4-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2024-06-22T02:06:39,410 adding 'sweep/__init__.py' 2024-06-22T02:06:39,411 adding 'sweep/calc_proj_mat_size.py' 2024-06-22T02:06:39,412 adding 'sweep/default_proj_mat_ope.py' 2024-06-22T02:06:39,414 adding 'sweep/fas2sweep.py' 2024-06-22T02:06:39,415 adding 'sweep/is_orthonormal.py' 2024-06-22T02:06:39,417 adding 'sweep/orthbase.py' 2024-06-22T02:06:39,419 adding 'sweep/sweep_support/__init__.py' 2024-06-22T02:06:39,420 adding 'sweep/sweep_support/aa2idx.py' 2024-06-22T02:06:39,421 adding 'sweep/sweep_support/aa2int.py' 2024-06-22T02:06:39,422 adding 'sweep/sweep_support/generate_chunk.py' 2024-06-22T02:06:39,423 adding 'sweep/sweep_support/ij2inds.py' 2024-06-22T02:06:39,425 adding 'sweep/sweep_support/mask2vec_bin.py' 2024-06-22T02:06:39,426 adding 'sweep/sweep_support/mask2vec_count.py' 2024-06-22T02:06:39,427 adding 'sweep/sweep_support/nt2int.py' 2024-06-22T02:06:39,428 adding 'sweep/sweep_support/orth.py' 2024-06-22T02:06:39,430 adding 'sweep/sweep_support/seq2list.py' 2024-06-22T02:06:39,431 adding 'sweep/utilities/__init__.py' 2024-06-22T02:06:39,432 adding 'sweep/utilities/fasta_tools.py' 2024-06-22T02:06:39,434 adding 'sweep/utilities/tree_tools.py' 2024-06-22T02:06:39,436 adding 'sweep-2.1.1.4.dist-info/METADATA' 2024-06-22T02:06:39,437 adding 'sweep-2.1.1.4.dist-info/WHEEL' 2024-06-22T02:06:39,438 adding 'sweep-2.1.1.4.dist-info/top_level.txt' 2024-06-22T02:06:39,439 adding 'sweep-2.1.1.4.dist-info/RECORD' 2024-06-22T02:06:39,440 removing build/bdist.linux-armv7l/wheel 2024-06-22T02:06:39,556 Building wheel for sweep (setup.py): finished with status 'done' 2024-06-22T02:06:39,559 Created wheel for sweep: filename=sweep-2.1.1.4-py3-none-any.whl size=15508 sha256=321ef05a8008b3f7fe3a5a241496efcb6888dc6b4b6d251b9a5c50a4aac09f36 2024-06-22T02:06:39,560 Stored in directory: /tmp/pip-ephem-wheel-cache-01mpsakm/wheels/25/81/80/bb4f9b7a6e78917e034b3b72af30b3af16f74f3fef4c374d5f 2024-06-22T02:06:39,570 Successfully built sweep 2024-06-22T02:06:39,574 Removed build tracker: '/tmp/pip-build-tracker-o5s_9d02'