2024-06-22T14:00:22,674 Created temporary directory: /tmp/pip-build-tracker-ycpilfky 2024-06-22T14:00:22,675 Initialized build tracking at /tmp/pip-build-tracker-ycpilfky 2024-06-22T14:00:22,676 Created build tracker: /tmp/pip-build-tracker-ycpilfky 2024-06-22T14:00:22,676 Entered build tracker: /tmp/pip-build-tracker-ycpilfky 2024-06-22T14:00:22,677 Created temporary directory: /tmp/pip-wheel-82xl9veq 2024-06-22T14:00:22,680 Created temporary directory: /tmp/pip-ephem-wheel-cache-vrrxk554 2024-06-22T14:00:22,702 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2024-06-22T14:00:22,705 2 location(s) to search for versions of multiqc: 2024-06-22T14:00:22,705 * https://pypi.org/simple/multiqc/ 2024-06-22T14:00:22,705 * https://www.piwheels.org/simple/multiqc/ 2024-06-22T14:00:22,706 Fetching project page and analyzing links: https://pypi.org/simple/multiqc/ 2024-06-22T14:00:22,707 Getting page https://pypi.org/simple/multiqc/ 2024-06-22T14:00:22,708 Found index url https://pypi.org/simple/ 2024-06-22T14:00:22,925 Fetched page https://pypi.org/simple/multiqc/ as application/vnd.pypi.simple.v1+json 2024-06-22T14:00:22,935 Found link https://files.pythonhosted.org/packages/44/ae/59e74780d4c66afbbac9053d2b6b0f12aaef94e4ce92cb00b71a20025098/multiqc-0.1.tar.gz (from https://pypi.org/simple/multiqc/), version: 0.1 2024-06-22T14:00:22,936 Found link https://files.pythonhosted.org/packages/e9/7c/14ca085189df0aaba25054bf42fe3ceb74bcbee5c271d4c6f9c9c39bf1c0/multiqc-0.2.0.tar.gz (from https://pypi.org/simple/multiqc/), version: 0.2.0 2024-06-22T14:00:22,936 Found link https://files.pythonhosted.org/packages/5d/cd/08627e78e84acc038dcab2ee6403af9eca73b1203fe505645a2c33c316b0/multiqc-0.3.0.tar.gz (from https://pypi.org/simple/multiqc/), version: 0.3.0 2024-06-22T14:00:22,937 Found link https://files.pythonhosted.org/packages/47/bb/3339d0a27891c241de1bcc76122e779b67efad072140224a02e8700e5199/multiqc-0.3.1.tar.gz (from https://pypi.org/simple/multiqc/), version: 0.3.1 2024-06-22T14:00:22,938 Found link https://files.pythonhosted.org/packages/e5/56/76229fca10700a78fe4a51baf2de7385509a48c7d281f42d9d311a547d76/multiqc-0.3.2.tar.gz (from https://pypi.org/simple/multiqc/), version: 0.3.2 2024-06-22T14:00:22,939 Found link https://files.pythonhosted.org/packages/1c/e0/1e14407025dd461f1917354af543dcd912b669729ce77e0e0d29879d146e/multiqc-0.4.tar.gz (from https://pypi.org/simple/multiqc/), version: 0.4 2024-06-22T14:00:22,939 Found link https://files.pythonhosted.org/packages/08/1c/d9833670aee1303332713f456140730a7a8335cc97bc7aa3c67f37a3b0e1/multiqc-0.5.tar.gz (from https://pypi.org/simple/multiqc/), version: 0.5 2024-06-22T14:00:22,940 Found link https://files.pythonhosted.org/packages/23/d9/95a5e62eea95f220007d7a6683d0da1ee1d9f99e6932bcff793b6601ef15/multiqc-0.6.tar.gz (from https://pypi.org/simple/multiqc/), version: 0.6 2024-06-22T14:00:22,941 Found link https://files.pythonhosted.org/packages/6b/b7/839b0c84448856bd3b2e8c381c4778c4b9c22ded890881d1cd12f9e686fa/multiqc-0.7.tar.gz (from https://pypi.org/simple/multiqc/), version: 0.7 2024-06-22T14:00:22,942 Found link https://files.pythonhosted.org/packages/ab/e4/9a9eea1facbc3dcb7c90e38d3719eea43d4877aa54a887726982f1ba1671/multiqc-0.8.tar.gz (from https://pypi.org/simple/multiqc/), version: 0.8 2024-06-22T14:00:22,942 Found link https://files.pythonhosted.org/packages/ca/7b/b65089cad82caa2618298482c6c80967bb22aca5f64a50df91f0a2888172/multiqc-0.9.tar.gz (from https://pypi.org/simple/multiqc/), version: 0.9 2024-06-22T14:00:22,943 Found link https://files.pythonhosted.org/packages/61/79/92c1b7d04f87bf70405cbcd24ae059abd509b19b13b469934125311dbf9f/multiqc-1.0.tar.gz (from https://pypi.org/simple/multiqc/), version: 1.0 2024-06-22T14:00:22,944 Found link https://files.pythonhosted.org/packages/a0/7c/bb475d750a39917218d48fd592be147bbe47f76f6afaeda84e350bd973fb/multiqc-1.1.tar.gz (from https://pypi.org/simple/multiqc/), version: 1.1 2024-06-22T14:00:22,944 Found link https://files.pythonhosted.org/packages/7e/c5/5b7e713b892ceadfdb23afe74acd9f246298f880fa96a304276a235422b4/multiqc-1.2.tar.gz (from https://pypi.org/simple/multiqc/), version: 1.2 2024-06-22T14:00:22,945 Found link https://files.pythonhosted.org/packages/2c/af/1183857d4f2ade150fb2e22282ff11e6f5355419d129ca4ee7200022177f/multiqc-1.3.tar.gz (from https://pypi.org/simple/multiqc/), version: 1.3 2024-06-22T14:00:22,946 Found link https://files.pythonhosted.org/packages/af/a1/5c5702c4b0ce9ee6fb7d1c982cc6f20832a85bfce184dcb8178f0bdcb5df/multiqc-1.4.tar.gz (from https://pypi.org/simple/multiqc/), version: 1.4 2024-06-22T14:00:22,947 Found link https://files.pythonhosted.org/packages/fa/3e/fbdcbaebadad2110eed3b4212ced58617cbd9badbfc728c5eabc53916b84/multiqc-1.5.tar.gz (from https://pypi.org/simple/multiqc/), version: 1.5 2024-06-22T14:00:22,947 Found link https://files.pythonhosted.org/packages/0c/00/1fd8c0cc80531bf51a1a2b15928a408b0e8a442a6e59236edc2a76371284/multiqc-1.6.tar.gz (from https://pypi.org/simple/multiqc/), version: 1.6 2024-06-22T14:00:22,948 Found link https://files.pythonhosted.org/packages/6b/c7/817d8ef024866e00625d94bbfa26e7a4131eedc166b3d65d7f54ebc90ed6/multiqc-1.7.tar.gz (from https://pypi.org/simple/multiqc/), version: 1.7 2024-06-22T14:00:22,948 Found link https://files.pythonhosted.org/packages/d3/4b/1cf18ef697e5daa72dfa55d496167354e6ec7d78e87c696a52f338c2dc63/multiqc-1.8.tar.gz (from https://pypi.org/simple/multiqc/), version: 1.8 2024-06-22T14:00:22,949 Found link https://files.pythonhosted.org/packages/c8/2d/f0a6be15f861c5d165726d7afecd823ca158dff530b566379623a0e4534b/multiqc-1.9.tar.gz (from https://pypi.org/simple/multiqc/), version: 1.9 2024-06-22T14:00:22,949 Skipping link: No binaries permitted for multiqc: https://files.pythonhosted.org/packages/35/e5/dfccaa54058f2f5d2a83176bfee12ca65d631dba5dadda2a0c52ce25c45f/multiqc-1.10-py3-none-any.whl (from https://pypi.org/simple/multiqc/) 2024-06-22T14:00:22,950 Found link https://files.pythonhosted.org/packages/4e/39/cd87ee0581ead995b561635106d47cc9593687a76db9745a093d09fff1d9/multiqc-1.10.tar.gz (from https://pypi.org/simple/multiqc/), version: 1.10 2024-06-22T14:00:22,951 Skipping link: No binaries permitted for multiqc: https://files.pythonhosted.org/packages/87/80/2e648984b8080fd65cb7c8eaa948a90ce74e8391828e6f7bdd4d0d137242/multiqc-1.10.1-py3-none-any.whl (from https://pypi.org/simple/multiqc/) 2024-06-22T14:00:22,951 Found link https://files.pythonhosted.org/packages/ca/e7/549a185924157e427b951ac741c1312ee4b324be9585ad323617bb3077a4/multiqc-1.10.1.tar.gz (from https://pypi.org/simple/multiqc/), version: 1.10.1 2024-06-22T14:00:22,952 Skipping link: No binaries permitted for multiqc: https://files.pythonhosted.org/packages/2e/2a/4332775300481391ea5a7a1f35406f83f5812a2734eff5987c462c7e1ec7/multiqc-1.11-py3-none-any.whl (from https://pypi.org/simple/multiqc/) 2024-06-22T14:00:22,953 Found link https://files.pythonhosted.org/packages/22/23/3f94ffb423762201bcccf0e0cbf821fccf75673a9fedfb3e7c7ea491024d/multiqc-1.11.tar.gz (from https://pypi.org/simple/multiqc/), version: 1.11 2024-06-22T14:00:22,953 Skipping link: No binaries permitted for multiqc: https://files.pythonhosted.org/packages/08/74/23d79b7df154d5742e5b25b9cdf3cc352445290d90c7cc5fb770ba9911a4/multiqc-1.12-py3-none-any.whl (from https://pypi.org/simple/multiqc/) 2024-06-22T14:00:22,954 Found link https://files.pythonhosted.org/packages/6a/f0/122025f4521fd085c07d7a706f08819b4c6bed9e62cfe99453f8c5968ab9/multiqc-1.12.tar.gz (from https://pypi.org/simple/multiqc/), version: 1.12 2024-06-22T14:00:22,955 Skipping link: No binaries permitted for multiqc: https://files.pythonhosted.org/packages/1a/37/35f769e2be82ba3760a62a1cb39af42beee5334efa40cc7e151626e03c91/multiqc-1.13-py3-none-any.whl (from https://pypi.org/simple/multiqc/) 2024-06-22T14:00:22,955 Found link https://files.pythonhosted.org/packages/7b/cd/cbd2df3bf899f79ec4b20d5807262dfd3b6ce02245e852ece8dcdad250b1/multiqc-1.13.tar.gz (from https://pypi.org/simple/multiqc/), version: 1.13 2024-06-22T14:00:22,956 Skipping link: No binaries permitted for multiqc: https://files.pythonhosted.org/packages/11/4c/0f85a278cd37406f195115e38281478e9933c50f389b7c4d989af42cb9d1/multiqc-1.14-py3-none-any.whl (from https://pypi.org/simple/multiqc/) 2024-06-22T14:00:22,956 Found link https://files.pythonhosted.org/packages/ae/bb/3cb9d23ba28eb96a479161230626e3a11a04fc99899ac341ec949bc38bcb/multiqc-1.14.tar.gz (from https://pypi.org/simple/multiqc/), version: 1.14 2024-06-22T14:00:22,957 Skipping link: No binaries permitted for multiqc: https://files.pythonhosted.org/packages/65/cd/ef0884f0abb38c9662b11f212f463cdb022ef504c512719ccf13d4c728eb/multiqc-1.15-py3-none-any.whl (from https://pypi.org/simple/multiqc/) 2024-06-22T14:00:22,958 Found link https://files.pythonhosted.org/packages/ff/96/4ea623b57fef48f6b6c0a89757d53f7b4482b1ab950501617177d5c4a979/multiqc-1.15.tar.gz (from https://pypi.org/simple/multiqc/), version: 1.15 2024-06-22T14:00:22,958 Skipping link: No binaries permitted for multiqc: https://files.pythonhosted.org/packages/e0/6b/f6b8380c75a069c079c7b60b17d1cc0ec1c67a3c9623cfe4ee41a73fa9b4/multiqc-1.16-py3-none-any.whl (from https://pypi.org/simple/multiqc/) 2024-06-22T14:00:22,959 Found link https://files.pythonhosted.org/packages/36/3d/cc530c0cdd5c9dfd4e197c8147efa69c7da18023e8ef23d6daba4ac4e13c/multiqc-1.16.tar.gz (from https://pypi.org/simple/multiqc/), version: 1.16 2024-06-22T14:00:22,959 Skipping link: No binaries permitted for multiqc: https://files.pythonhosted.org/packages/a1/a5/2ee5d2546f04ef6addd930de9b772a6ee32151d4632319cde64aef822d50/multiqc-1.17-py3-none-any.whl (from https://pypi.org/simple/multiqc/) 2024-06-22T14:00:22,960 Found link https://files.pythonhosted.org/packages/e9/0d/2fc684e101ec6ce82ea5c1eaad1a0ab202fd08f50bee5847ef9e8168b7ad/multiqc-1.17.tar.gz (from https://pypi.org/simple/multiqc/), version: 1.17 2024-06-22T14:00:22,961 Skipping link: No binaries permitted for multiqc: https://files.pythonhosted.org/packages/ec/28/0e526e176fde109e06f0409e940e10893bc2e6e7d5cf91a44a3cf8ea214e/multiqc-1.18-py3-none-any.whl (from https://pypi.org/simple/multiqc/) 2024-06-22T14:00:22,961 Found link https://files.pythonhosted.org/packages/a5/17/6ed4268d6bc06489add671e5acbb7d429c97b99391b20d964689044cda77/multiqc-1.18.tar.gz (from https://pypi.org/simple/multiqc/), version: 1.18 2024-06-22T14:00:22,962 Skipping link: No binaries permitted for multiqc: https://files.pythonhosted.org/packages/d6/89/c164b49532afaf3308f809de48c519108592d0b204e368dca2a93b1b956b/multiqc-1.19-py3-none-any.whl (from https://pypi.org/simple/multiqc/) 2024-06-22T14:00:22,962 Found link https://files.pythonhosted.org/packages/1d/7c/0b3882a0916151b7877faef0f80ca403e1a7f4fc82b875b2dca32cdb8b89/multiqc-1.19.tar.gz (from https://pypi.org/simple/multiqc/), version: 1.19 2024-06-22T14:00:22,963 Skipping link: No binaries permitted for multiqc: https://files.pythonhosted.org/packages/6e/38/ec1edb7d5337c1bf4763e7ef0bb167ce14802742dff618a2fad3f251fb84/multiqc-1.20-py3-none-any.whl (from https://pypi.org/simple/multiqc/) 2024-06-22T14:00:22,964 Found link https://files.pythonhosted.org/packages/8c/c2/6016a7cb33e904a2637da26065a45198f8ed88bc9461d30a177c130360f8/multiqc-1.20.tar.gz (from https://pypi.org/simple/multiqc/), version: 1.20 2024-06-22T14:00:22,965 Skipping link: No binaries permitted for multiqc: https://files.pythonhosted.org/packages/05/93/f3d9efa1c949050e73a504e350a2f399bcc6c7db30e132e7469ce30cc36c/multiqc-1.21-py3-none-any.whl (from https://pypi.org/simple/multiqc/) (requires-python:>=3.8) 2024-06-22T14:00:22,965 Found link https://files.pythonhosted.org/packages/d7/4a/69fa3d76fb71a50c3f0f22a5b4d3fd6db3956f631862804f6524b66122d6/multiqc-1.21.tar.gz (from https://pypi.org/simple/multiqc/) (requires-python:>=3.8), version: 1.21 2024-06-22T14:00:22,966 Skipping link: No binaries permitted for multiqc: https://files.pythonhosted.org/packages/81/bc/5780dd13065676e4b1befca4345e18734a71ebc4f11db0cc1b4b3f325c36/multiqc-1.22-py3-none-any.whl (from https://pypi.org/simple/multiqc/) (requires-python:>=3.8) 2024-06-22T14:00:22,967 Found link https://files.pythonhosted.org/packages/b4/60/ed18675ca283a2c7469308399789240f31f2f6f340ed192f264993361a83/multiqc-1.22.tar.gz (from https://pypi.org/simple/multiqc/) (requires-python:>=3.8), version: 1.22 2024-06-22T14:00:22,968 Skipping link: No binaries permitted for multiqc: https://files.pythonhosted.org/packages/f6/12/f2dc24575e39d559e759aa02b4fb63d5e1e1a025420d08c497346b229e9c/multiqc-1.22.1-py3-none-any.whl (from https://pypi.org/simple/multiqc/) (requires-python:>=3.8) 2024-06-22T14:00:22,969 Found link https://files.pythonhosted.org/packages/6e/fa/2f25f892aaa7ef113f18c546ecdf3439fddd1ab1bfbc2bcd113b9ed2e3b6/multiqc-1.22.1.tar.gz (from https://pypi.org/simple/multiqc/) (requires-python:>=3.8), version: 1.22.1 2024-06-22T14:00:22,969 Skipping link: No binaries permitted for multiqc: https://files.pythonhosted.org/packages/65/b7/e3d91164ae9c94ffea6b66db2cf831a6cdde01880a834449eaaa8dc10e75/multiqc-1.22.2-py3-none-any.whl (from https://pypi.org/simple/multiqc/) (requires-python:>=3.8) 2024-06-22T14:00:22,970 Found link https://files.pythonhosted.org/packages/66/cb/0231ed0141cdd68b1dde84027232c0d4aaf4f8ef79187a2de2246e1d83e9/multiqc-1.22.2.tar.gz (from https://pypi.org/simple/multiqc/) (requires-python:>=3.8), version: 1.22.2 2024-06-22T14:00:22,971 Skipping link: No binaries permitted for multiqc: https://files.pythonhosted.org/packages/7f/ac/ab3d945b8b3baf29336797b0e42cead352af0750b793ccb6ac03e0ca5442/multiqc-1.22.3-py3-none-any.whl (from https://pypi.org/simple/multiqc/) (requires-python:>=3.8) 2024-06-22T14:00:22,972 Found link https://files.pythonhosted.org/packages/5d/fd/c56e8f84adc8f33f141a21523a2d23f6e4fce5720937e0eef9d11723eb80/multiqc-1.22.3.tar.gz (from https://pypi.org/simple/multiqc/) (requires-python:>=3.8), version: 1.22.3 2024-06-22T14:00:22,972 Fetching project page and analyzing links: https://www.piwheels.org/simple/multiqc/ 2024-06-22T14:00:22,973 Getting page https://www.piwheels.org/simple/multiqc/ 2024-06-22T14:00:22,974 Found index url https://www.piwheels.org/simple/ 2024-06-22T14:00:23,133 Fetched page https://www.piwheels.org/simple/multiqc/ as text/html 2024-06-22T14:00:23,143 Skipping link: No binaries permitted for multiqc: https://www.piwheels.org/simple/multiqc/multiqc-1.22.2-py3-none-any.whl#sha256=0766bae07eba16a1e5d325f47779b039cdc1f3c8767f4fe382e2c6e05a00f75f (from https://www.piwheels.org/simple/multiqc/) (requires-python:>=3.8) 2024-06-22T14:00:23,144 Skipping link: No binaries permitted for multiqc: https://www.piwheels.org/simple/multiqc/multiqc-1.22.1-py3-none-any.whl#sha256=6c30c3537fb106035f5ef11d18305211ea1aa76c8b5ec9ecf28abe5423433408 (from https://www.piwheels.org/simple/multiqc/) (requires-python:>=3.8) 2024-06-22T14:00:23,145 Skipping link: No binaries permitted for multiqc: https://www.piwheels.org/simple/multiqc/multiqc-1.22-py3-none-any.whl#sha256=18f07e1a35ccfb9ef4ef2b78fe2cee9ea86c93543d51c7518aa87bdf06a7c0ff (from https://www.piwheels.org/simple/multiqc/) (requires-python:>=3.8) 2024-06-22T14:00:23,145 Skipping link: No binaries permitted for multiqc: https://www.piwheels.org/simple/multiqc/multiqc-1.21-py3-none-any.whl#sha256=66bad70b6b309118590096feb58c3855aa0a646c5828d5162776b3e954dcabb0 (from https://www.piwheels.org/simple/multiqc/) (requires-python:>=3.8) 2024-06-22T14:00:23,146 Skipping link: No binaries permitted for multiqc: https://www.piwheels.org/simple/multiqc/multiqc-1.20-py3-none-any.whl#sha256=761b9ace340a048c13c61645e020f0afe3284e1d4bace8fca65fc45c560ccd12 (from https://www.piwheels.org/simple/multiqc/) 2024-06-22T14:00:23,146 Skipping link: No binaries permitted for multiqc: https://www.piwheels.org/simple/multiqc/multiqc-1.19-py3-none-any.whl#sha256=95392f476f57d4e6409a8840c07548b80fa1ad6a914ec4fd1f0d5ba4674c1f4b (from https://www.piwheels.org/simple/multiqc/) 2024-06-22T14:00:23,147 Skipping link: No binaries permitted for multiqc: https://www.piwheels.org/simple/multiqc/multiqc-1.18-py3-none-any.whl#sha256=6571d2a944e15103a4d824a1bada8a8d1d11a5369665b0bcebd80bdb402dac7a (from https://www.piwheels.org/simple/multiqc/) 2024-06-22T14:00:23,147 Skipping link: No binaries permitted for multiqc: https://www.piwheels.org/simple/multiqc/multiqc-1.17-py3-none-any.whl#sha256=3dc28a2d049c186d903291a1db4451f0a5a8fef09e66e057baf0acd6179e6263 (from https://www.piwheels.org/simple/multiqc/) 2024-06-22T14:00:23,148 Skipping link: No binaries permitted for multiqc: https://www.piwheels.org/simple/multiqc/multiqc-1.16-py3-none-any.whl#sha256=03cca6a0517a1d55a342d26623de81f9cac003da50a6fe2e9e8450ce798ec2fa (from https://www.piwheels.org/simple/multiqc/) 2024-06-22T14:00:23,149 Skipping link: No binaries permitted for multiqc: https://www.piwheels.org/simple/multiqc/multiqc-1.15-py3-none-any.whl#sha256=b8e2124a3861980ad09b76cddb6765026adbbccf6744750bede1e09f8a938cb5 (from https://www.piwheels.org/simple/multiqc/) 2024-06-22T14:00:23,149 Skipping link: No binaries permitted for multiqc: https://www.piwheels.org/simple/multiqc/multiqc-1.14-py3-none-any.whl#sha256=77b5c82fcefdd31644526d308c1eb7b7089ad0603a489df6c628cfe8643aa301 (from https://www.piwheels.org/simple/multiqc/) 2024-06-22T14:00:23,150 Skipping link: No binaries permitted for multiqc: https://www.piwheels.org/simple/multiqc/multiqc-1.13-py3-none-any.whl#sha256=6d6952eddd313ed10111a2a56abf5421e4418808c270c772f6f35ec7523f0976 (from https://www.piwheels.org/simple/multiqc/) 2024-06-22T14:00:23,150 Skipping link: No binaries permitted for multiqc: https://www.piwheels.org/simple/multiqc/multiqc-1.12-py3-none-any.whl#sha256=67987570ac064a0c09bb6a22e69589384484762af8cac9e4a688f51522a4e8a3 (from https://www.piwheels.org/simple/multiqc/) 2024-06-22T14:00:23,150 Skipping link: No binaries permitted for multiqc: https://www.piwheels.org/simple/multiqc/multiqc-1.11-py3-none-any.whl#sha256=b2ea91646a12c0e31df6f5d29509d6ab0e371916b55d7f35b3e3a03bdcc0ef3d (from https://www.piwheels.org/simple/multiqc/) 2024-06-22T14:00:23,151 Skipping link: No binaries permitted for multiqc: https://www.piwheels.org/simple/multiqc/multiqc-1.10.1-py3-none-any.whl#sha256=213b2a50f377d47c3203aadbe59374e5f392ed700c3c8b99b25a321c6504433b (from https://www.piwheels.org/simple/multiqc/) 2024-06-22T14:00:23,151 Skipping link: No binaries permitted for multiqc: https://www.piwheels.org/simple/multiqc/multiqc-1.10-py3-none-any.whl#sha256=d50081f549cebbfd77e5ee016efc19d9860e63e14faac945bebb55707bdcde8d (from https://www.piwheels.org/simple/multiqc/) 2024-06-22T14:00:23,152 Skipping link: No binaries permitted for multiqc: https://www.piwheels.org/simple/multiqc/multiqc-1.9-py3-none-any.whl#sha256=28cad8bafce03a40b71bffb8c9d6b0a91b46db72750069b4b2a4760650a1e7ab (from https://www.piwheels.org/simple/multiqc/) 2024-06-22T14:00:23,153 Skipping link: No binaries permitted for multiqc: https://www.piwheels.org/simple/multiqc/multiqc-1.8-py3-none-any.whl#sha256=5c1de3fffcfc9ff6ae686c8b47b1bcc3eeab0bcb6ec104fdafbc920c4861fbb7 (from https://www.piwheels.org/simple/multiqc/) 2024-06-22T14:00:23,154 Skipping link: No binaries permitted for multiqc: https://www.piwheels.org/simple/multiqc/multiqc-1.7-py3-none-any.whl#sha256=78412742db690568f7481fd2e021dc148be2862519e3f193d20cbf957e6f0338 (from https://www.piwheels.org/simple/multiqc/) 2024-06-22T14:00:23,154 Skipping link: No binaries permitted for multiqc: https://www.piwheels.org/simple/multiqc/multiqc-1.6-py3-none-any.whl#sha256=e1600e93d93041641028f3364fa493f6f35a7b765d5f0aafd73089ace6f062e6 (from https://www.piwheels.org/simple/multiqc/) 2024-06-22T14:00:23,155 Skipping link: No binaries permitted for multiqc: https://www.piwheels.org/simple/multiqc/multiqc-1.5-py3-none-any.whl#sha256=18ee8675a1f316d459b91049c42fde5061c6ae863063408fa063a4ecbeb0d527 (from https://www.piwheels.org/simple/multiqc/) 2024-06-22T14:00:23,155 Skipping link: No binaries permitted for multiqc: https://www.piwheels.org/simple/multiqc/multiqc-1.4-py3-none-any.whl#sha256=02e593c71a8c2ed237d3f0138051b8e8c7f7f7c018ecc51b0cf46a17ad8c3f7f (from https://www.piwheels.org/simple/multiqc/) 2024-06-22T14:00:23,156 Skipping link: No binaries permitted for multiqc: https://www.piwheels.org/simple/multiqc/multiqc-1.3-py3-none-any.whl#sha256=780ff22fadd86cb81d9afe67c858e478ada911ed296d7d3f430a1da03059f96f (from https://www.piwheels.org/simple/multiqc/) 2024-06-22T14:00:23,156 Skipping link: No binaries permitted for multiqc: https://www.piwheels.org/simple/multiqc/multiqc-1.2-py3-none-any.whl#sha256=a2d3ab5bfec00fcaeb2b6b02477683cb026b7e803238094f6ba5706e9911e5db (from https://www.piwheels.org/simple/multiqc/) 2024-06-22T14:00:23,157 Skipping link: No binaries permitted for multiqc: https://www.piwheels.org/simple/multiqc/multiqc-1.1-py3-none-any.whl#sha256=17b18b185ba21595f7b6ab85364b590b11f5b90666bedd3fef8779d986b8783b (from https://www.piwheels.org/simple/multiqc/) 2024-06-22T14:00:23,158 Skipping link: No binaries permitted for multiqc: https://www.piwheels.org/simple/multiqc/multiqc-1.0-py3-none-any.whl#sha256=24119737c52e447f7913e17ef08e0a0e7218dd10ac535aa8eddb5181906eca44 (from https://www.piwheels.org/simple/multiqc/) 2024-06-22T14:00:23,158 Skipping link: No binaries permitted for multiqc: https://www.piwheels.org/simple/multiqc/multiqc-0.9-py3-none-any.whl#sha256=8e08076a99a715a117ba6a56d8d23be94585467dff12235fde06aa32894f3588 (from https://www.piwheels.org/simple/multiqc/) 2024-06-22T14:00:23,159 Skipping link: No binaries permitted for multiqc: https://www.piwheels.org/simple/multiqc/multiqc-0.8-py3-none-any.whl#sha256=24d31f7b916c4c11cb816a515f858d222d26027a5938cef4f0c3f52ad37e3329 (from https://www.piwheels.org/simple/multiqc/) 2024-06-22T14:00:23,159 Skipping link: No binaries permitted for multiqc: https://www.piwheels.org/simple/multiqc/multiqc-0.7-py3-none-any.whl#sha256=27df9fe1e307b2b16f157f3a1548b69b44f18346fdd66794327008ade6ab90db (from https://www.piwheels.org/simple/multiqc/) 2024-06-22T14:00:23,159 Skipping link: No binaries permitted for multiqc: https://www.piwheels.org/simple/multiqc/multiqc-0.6-py3-none-any.whl#sha256=14044c5aa5f26ae68a9f1c47423f113e7a0d3e95d5b16dd4dcad1df4f7621982 (from https://www.piwheels.org/simple/multiqc/) 2024-06-22T14:00:23,160 Skipping link: No binaries permitted for multiqc: https://www.piwheels.org/simple/multiqc/multiqc-0.5-py3-none-any.whl#sha256=5528eef1c13487a576717815ce7548964978e93f4668d414eb835d0267cd84ff (from https://www.piwheels.org/simple/multiqc/) 2024-06-22T14:00:23,160 Skipping link: No binaries permitted for multiqc: https://www.piwheels.org/simple/multiqc/multiqc-0.4-py3-none-any.whl#sha256=f67c3af42d83144411f956e962f736ef90b3e1946dd279ae47720a5142dd9a23 (from https://www.piwheels.org/simple/multiqc/) 2024-06-22T14:00:23,161 Skipping link: No binaries permitted for multiqc: https://www.piwheels.org/simple/multiqc/multiqc-0.3.2-py3-none-any.whl#sha256=ca3e9c65ab5f1290d0e5ce999ac078ec0b75633ac8b64bc38f79d41a442f0147 (from https://www.piwheels.org/simple/multiqc/) 2024-06-22T14:00:23,162 Skipping link: No binaries permitted for multiqc: https://www.piwheels.org/simple/multiqc/multiqc-0.3.1-py3-none-any.whl#sha256=e3fcc96c755277a57d0e7b1b8fac3256ff45b164d7a77655e169f54983470565 (from https://www.piwheels.org/simple/multiqc/) 2024-06-22T14:00:23,162 Skipping link: No binaries permitted for multiqc: https://www.piwheels.org/simple/multiqc/multiqc-0.3.0-py3-none-any.whl#sha256=d1c8d281f8a75ded36ccdafbc131072a3ee9a5ddd896d32dd22f9945141a6b12 (from https://www.piwheels.org/simple/multiqc/) 2024-06-22T14:00:23,163 Skipping link: No binaries permitted for multiqc: https://www.piwheels.org/simple/multiqc/multiqc-0.2.0-py3-none-any.whl#sha256=1ec95a9f8508ed8aee9eb0c6f7f3f77f6d477bf1405395854a1e2a1d2b5ea053 (from https://www.piwheels.org/simple/multiqc/) 2024-06-22T14:00:23,163 Skipping link: No binaries permitted for multiqc: https://www.piwheels.org/simple/multiqc/multiqc-0.1-py3-none-any.whl#sha256=aadbe1a0321716289d4557925ecb20ef7bb769a99c42ac213284f8c0af4eb0ea (from https://www.piwheels.org/simple/multiqc/) 2024-06-22T14:00:23,164 Skipping link: not a file: https://www.piwheels.org/simple/multiqc/ 2024-06-22T14:00:23,164 Skipping link: not a file: https://pypi.org/simple/multiqc/ 2024-06-22T14:00:23,189 Given no hashes to check 1 links for project 'multiqc': discarding no candidates 2024-06-22T14:00:23,208 Collecting multiqc==1.22.3 2024-06-22T14:00:23,211 Created temporary directory: /tmp/pip-unpack-y3a1svgc 2024-06-22T14:00:23,427 Downloading multiqc-1.22.3.tar.gz (4.2 MB) 2024-06-22T14:00:25,853 Added multiqc==1.22.3 from https://files.pythonhosted.org/packages/5d/fd/c56e8f84adc8f33f141a21523a2d23f6e4fce5720937e0eef9d11723eb80/multiqc-1.22.3.tar.gz to build tracker '/tmp/pip-build-tracker-ycpilfky' 2024-06-22T14:00:25,867 Created temporary directory: /tmp/pip-build-env-ye0gin6m 2024-06-22T14:00:25,873 Installing build dependencies: started 2024-06-22T14:00:25,875 Running command pip subprocess to install build dependencies 2024-06-22T14:00:27,027 Using pip 24.0 from /home/piwheels/.local/lib/python3.11/site-packages/pip (python 3.11) 2024-06-22T14:00:27,564 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2024-06-22T14:00:29,018 Collecting setuptools 2024-06-22T14:00:29,036 Using cached https://www.piwheels.org/simple/setuptools/setuptools-70.1.0-py3-none-any.whl (882 kB) 2024-06-22T14:00:31,856 Installing collected packages: setuptools 2024-06-22T14:00:34,268 Successfully installed setuptools-70.1.0 2024-06-22T14:00:34,770 Installing build dependencies: finished with status 'done' 2024-06-22T14:00:34,773 Getting requirements to build wheel: started 2024-06-22T14:00:34,774 Running command Getting requirements to build wheel 2024-06-22T14:00:35,574 running egg_info 2024-06-22T14:00:35,577 writing multiqc.egg-info/PKG-INFO 2024-06-22T14:00:35,584 writing dependency_links to multiqc.egg-info/dependency_links.txt 2024-06-22T14:00:35,591 writing entry points to multiqc.egg-info/entry_points.txt 2024-06-22T14:00:35,594 writing requirements to multiqc.egg-info/requires.txt 2024-06-22T14:00:35,595 writing top-level names to multiqc.egg-info/top_level.txt 2024-06-22T14:00:35,610 reading manifest file 'multiqc.egg-info/SOURCES.txt' 2024-06-22T14:00:35,699 reading manifest template 'MANIFEST.in' 2024-06-22T14:00:35,982 adding license file 'LICENSE' 2024-06-22T14:00:36,007 writing manifest file 'multiqc.egg-info/SOURCES.txt' 2024-06-22T14:00:36,121 Getting requirements to build wheel: finished with status 'done' 2024-06-22T14:00:36,125 Created temporary directory: /tmp/pip-modern-metadata-upit_bi6 2024-06-22T14:00:36,127 Preparing metadata (pyproject.toml): started 2024-06-22T14:00:36,128 Running command Preparing metadata (pyproject.toml) 2024-06-22T14:00:36,870 running dist_info 2024-06-22T14:00:36,874 creating /tmp/pip-modern-metadata-upit_bi6/multiqc.egg-info 2024-06-22T14:00:36,877 writing /tmp/pip-modern-metadata-upit_bi6/multiqc.egg-info/PKG-INFO 2024-06-22T14:00:36,884 writing dependency_links to /tmp/pip-modern-metadata-upit_bi6/multiqc.egg-info/dependency_links.txt 2024-06-22T14:00:36,891 writing entry points to /tmp/pip-modern-metadata-upit_bi6/multiqc.egg-info/entry_points.txt 2024-06-22T14:00:36,894 writing requirements to /tmp/pip-modern-metadata-upit_bi6/multiqc.egg-info/requires.txt 2024-06-22T14:00:36,895 writing top-level names to /tmp/pip-modern-metadata-upit_bi6/multiqc.egg-info/top_level.txt 2024-06-22T14:00:36,897 writing manifest file '/tmp/pip-modern-metadata-upit_bi6/multiqc.egg-info/SOURCES.txt' 2024-06-22T14:00:36,909 reading manifest file '/tmp/pip-modern-metadata-upit_bi6/multiqc.egg-info/SOURCES.txt' 2024-06-22T14:00:36,911 reading manifest template 'MANIFEST.in' 2024-06-22T14:00:37,150 adding license file 'LICENSE' 2024-06-22T14:00:37,168 writing manifest file '/tmp/pip-modern-metadata-upit_bi6/multiqc.egg-info/SOURCES.txt' 2024-06-22T14:00:37,170 creating '/tmp/pip-modern-metadata-upit_bi6/multiqc-1.22.3.dist-info' 2024-06-22T14:00:37,324 Preparing metadata (pyproject.toml): finished with status 'done' 2024-06-22T14:00:37,343 Source in /tmp/pip-wheel-82xl9veq/multiqc_bee32fe278d44a539921a21cec3d6f5a has version 1.22.3, which satisfies requirement multiqc==1.22.3 from https://files.pythonhosted.org/packages/5d/fd/c56e8f84adc8f33f141a21523a2d23f6e4fce5720937e0eef9d11723eb80/multiqc-1.22.3.tar.gz 2024-06-22T14:00:37,346 Removed multiqc==1.22.3 from https://files.pythonhosted.org/packages/5d/fd/c56e8f84adc8f33f141a21523a2d23f6e4fce5720937e0eef9d11723eb80/multiqc-1.22.3.tar.gz from build tracker '/tmp/pip-build-tracker-ycpilfky' 2024-06-22T14:00:37,371 Created temporary directory: /tmp/pip-unpack-90u2zlmj 2024-06-22T14:00:37,374 Created temporary directory: /tmp/pip-unpack-giu23rix 2024-06-22T14:00:37,424 Building wheels for collected packages: multiqc 2024-06-22T14:00:37,428 Created temporary directory: /tmp/pip-wheel-te01fkx4 2024-06-22T14:00:37,428 Destination directory: /tmp/pip-wheel-te01fkx4 2024-06-22T14:00:37,430 Building wheel for multiqc (pyproject.toml): started 2024-06-22T14:00:37,431 Running command Building wheel for multiqc (pyproject.toml) 2024-06-22T14:00:38,158 running bdist_wheel 2024-06-22T14:00:38,172 running build 2024-06-22T14:00:38,172 running build_py 2024-06-22T14:00:38,176 creating build 2024-06-22T14:00:38,177 creating build/lib 2024-06-22T14:00:38,177 creating build/lib/multiqc 2024-06-22T14:00:38,178 copying multiqc/interactive.py -> build/lib/multiqc 2024-06-22T14:00:38,181 copying multiqc/validation.py -> build/lib/multiqc 2024-06-22T14:00:38,183 copying multiqc/report.py -> build/lib/multiqc 2024-06-22T14:00:38,186 copying multiqc/__main__.py -> build/lib/multiqc 2024-06-22T14:00:38,187 copying multiqc/__init__.py -> build/lib/multiqc 2024-06-22T14:00:38,189 copying multiqc/multiqc.py -> build/lib/multiqc 2024-06-22T14:00:38,191 copying multiqc/config.py -> build/lib/multiqc 2024-06-22T14:00:38,194 copying multiqc/base_module.py -> build/lib/multiqc 2024-06-22T14:00:38,196 running egg_info 2024-06-22T14:00:38,199 writing multiqc.egg-info/PKG-INFO 2024-06-22T14:00:38,205 writing dependency_links to multiqc.egg-info/dependency_links.txt 2024-06-22T14:00:38,212 writing entry points to multiqc.egg-info/entry_points.txt 2024-06-22T14:00:38,215 writing requirements to multiqc.egg-info/requires.txt 2024-06-22T14:00:38,216 writing top-level names to multiqc.egg-info/top_level.txt 2024-06-22T14:00:38,223 reading manifest file 'multiqc.egg-info/SOURCES.txt' 2024-06-22T14:00:38,236 reading manifest template 'MANIFEST.in' 2024-06-22T14:00:38,497 adding license file 'LICENSE' 2024-06-22T14:00:38,521 writing manifest file 'multiqc.egg-info/SOURCES.txt' 2024-06-22T14:00:38,524 /tmp/pip-build-env-ye0gin6m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.core' is absent from the `packages` configuration. 2024-06-22T14:00:38,525 !! 2024-06-22T14:00:38,526 ******************************************************************************** 2024-06-22T14:00:38,527 ############################ 2024-06-22T14:00:38,527 # Package would be ignored # 2024-06-22T14:00:38,528 ############################ 2024-06-22T14:00:38,529 Python recognizes 'multiqc.core' as an importable package[^1], 2024-06-22T14:00:38,529 but it is absent from setuptools' `packages` configuration. 2024-06-22T14:00:38,530 This leads to an ambiguous overall configuration. If you want to distribute this 2024-06-22T14:00:38,531 package, please make sure that 'multiqc.core' is explicitly added 2024-06-22T14:00:38,531 to the `packages` configuration field. 2024-06-22T14:00:38,532 Alternatively, you can also rely on setuptools' discovery methods 2024-06-22T14:00:38,533 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-06-22T14:00:38,534 instead of `find_packages(...)`/`find:`). 2024-06-22T14:00:38,535 You can read more about "package discovery" on setuptools documentation page: 2024-06-22T14:00:38,536 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-06-22T14:00:38,537 If you don't want 'multiqc.core' to be distributed and are 2024-06-22T14:00:38,537 already explicitly excluding 'multiqc.core' via 2024-06-22T14:00:38,538 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-06-22T14:00:38,539 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-06-22T14:00:38,539 combination with a more fine grained `package-data` configuration. 2024-06-22T14:00:38,540 You can read more about "package data files" on setuptools documentation page: 2024-06-22T14:00:38,541 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-06-22T14:00:38,542 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-06-22T14:00:38,542 even if it does not contain any `.py` files. 2024-06-22T14:00:38,542 On the other hand, currently there is no concept of package data 2024-06-22T14:00:38,543 directory, all directories are treated like packages. 2024-06-22T14:00:38,543 ******************************************************************************** 2024-06-22T14:00:38,544 !! 2024-06-22T14:00:38,544 check.warn(importable) 2024-06-22T14:00:38,545 /tmp/pip-build-env-ye0gin6m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules' is absent from the `packages` configuration. 2024-06-22T14:00:38,545 !! 2024-06-22T14:00:38,546 ******************************************************************************** 2024-06-22T14:00:38,547 ############################ 2024-06-22T14:00:38,547 # Package would be ignored # 2024-06-22T14:00:38,547 ############################ 2024-06-22T14:00:38,548 Python recognizes 'multiqc.modules' as an importable package[^1], 2024-06-22T14:00:38,548 but it is absent from setuptools' `packages` configuration. 2024-06-22T14:00:38,549 This leads to an ambiguous overall configuration. If you want to distribute this 2024-06-22T14:00:38,549 package, please make sure that 'multiqc.modules' is explicitly added 2024-06-22T14:00:38,550 to the `packages` configuration field. 2024-06-22T14:00:38,551 Alternatively, you can also rely on setuptools' discovery methods 2024-06-22T14:00:38,551 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-06-22T14:00:38,552 instead of `find_packages(...)`/`find:`). 2024-06-22T14:00:38,553 You can read more about "package discovery" on setuptools documentation page: 2024-06-22T14:00:38,554 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-06-22T14:00:38,555 If you don't want 'multiqc.modules' to be distributed and are 2024-06-22T14:00:38,555 already explicitly excluding 'multiqc.modules' via 2024-06-22T14:00:38,556 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-06-22T14:00:38,556 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-06-22T14:00:38,557 combination with a more fine grained `package-data` configuration. 2024-06-22T14:00:38,558 You can read more about "package data files" on setuptools documentation page: 2024-06-22T14:00:38,558 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-06-22T14:00:38,560 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-06-22T14:00:38,560 even if it does not contain any `.py` files. 2024-06-22T14:00:38,561 On the other hand, currently there is no concept of package data 2024-06-22T14:00:38,561 directory, all directories are treated like packages. 2024-06-22T14:00:38,562 ******************************************************************************** 2024-06-22T14:00:38,563 !! 2024-06-22T14:00:38,563 check.warn(importable) 2024-06-22T14:00:38,564 /tmp/pip-build-env-ye0gin6m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.adapterremoval' is absent from the `packages` configuration. 2024-06-22T14:00:38,564 !! 2024-06-22T14:00:38,565 ******************************************************************************** 2024-06-22T14:00:38,565 ############################ 2024-06-22T14:00:38,566 # Package would be ignored # 2024-06-22T14:00:38,566 ############################ 2024-06-22T14:00:38,567 Python recognizes 'multiqc.modules.adapterremoval' as an importable package[^1], 2024-06-22T14:00:38,567 but it is absent from setuptools' `packages` configuration. 2024-06-22T14:00:38,568 This leads to an ambiguous overall configuration. If you want to distribute this 2024-06-22T14:00:38,568 package, please make sure that 'multiqc.modules.adapterremoval' is explicitly added 2024-06-22T14:00:38,568 to the `packages` configuration field. 2024-06-22T14:00:38,569 Alternatively, you can also rely on setuptools' discovery methods 2024-06-22T14:00:38,569 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-06-22T14:00:38,570 instead of `find_packages(...)`/`find:`). 2024-06-22T14:00:38,570 You can read more about "package discovery" on setuptools documentation page: 2024-06-22T14:00:38,571 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-06-22T14:00:38,572 If you don't want 'multiqc.modules.adapterremoval' to be distributed and are 2024-06-22T14:00:38,572 already explicitly excluding 'multiqc.modules.adapterremoval' via 2024-06-22T14:00:38,572 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-06-22T14:00:38,573 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-06-22T14:00:38,573 combination with a more fine grained `package-data` configuration. 2024-06-22T14:00:38,574 You can read more about "package data files" on setuptools documentation page: 2024-06-22T14:00:38,575 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-06-22T14:00:38,577 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-06-22T14:00:38,577 even if it does not contain any `.py` files. 2024-06-22T14:00:38,578 On the other hand, currently there is no concept of package data 2024-06-22T14:00:38,578 directory, all directories are treated like packages. 2024-06-22T14:00:38,579 ******************************************************************************** 2024-06-22T14:00:38,580 !! 2024-06-22T14:00:38,580 check.warn(importable) 2024-06-22T14:00:38,581 /tmp/pip-build-env-ye0gin6m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.afterqc' is absent from the `packages` configuration. 2024-06-22T14:00:38,581 !! 2024-06-22T14:00:38,582 ******************************************************************************** 2024-06-22T14:00:38,583 ############################ 2024-06-22T14:00:38,583 # Package would be ignored # 2024-06-22T14:00:38,583 ############################ 2024-06-22T14:00:38,584 Python recognizes 'multiqc.modules.afterqc' as an importable package[^1], 2024-06-22T14:00:38,584 but it is absent from setuptools' `packages` configuration. 2024-06-22T14:00:38,585 This leads to an ambiguous overall configuration. If you want to distribute this 2024-06-22T14:00:38,586 package, please make sure that 'multiqc.modules.afterqc' is explicitly added 2024-06-22T14:00:38,586 to the `packages` configuration field. 2024-06-22T14:00:38,588 Alternatively, you can also rely on setuptools' discovery methods 2024-06-22T14:00:38,588 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-06-22T14:00:38,589 instead of `find_packages(...)`/`find:`). 2024-06-22T14:00:38,590 You can read more about "package discovery" on setuptools documentation page: 2024-06-22T14:00:38,590 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-06-22T14:00:38,591 If you don't want 'multiqc.modules.afterqc' to be distributed and are 2024-06-22T14:00:38,591 already explicitly excluding 'multiqc.modules.afterqc' via 2024-06-22T14:00:38,592 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-06-22T14:00:38,592 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-06-22T14:00:38,592 combination with a more fine grained `package-data` configuration. 2024-06-22T14:00:38,593 You can read more about "package data files" on setuptools documentation page: 2024-06-22T14:00:38,594 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-06-22T14:00:38,595 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-06-22T14:00:38,595 even if it does not contain any `.py` files. 2024-06-22T14:00:38,596 On the other hand, currently there is no concept of package data 2024-06-22T14:00:38,596 directory, all directories are treated like packages. 2024-06-22T14:00:38,596 ******************************************************************************** 2024-06-22T14:00:38,597 !! 2024-06-22T14:00:38,598 check.warn(importable) 2024-06-22T14:00:38,598 /tmp/pip-build-env-ye0gin6m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.anglerfish' is absent from the `packages` configuration. 2024-06-22T14:00:38,598 !! 2024-06-22T14:00:38,599 ******************************************************************************** 2024-06-22T14:00:38,600 ############################ 2024-06-22T14:00:38,601 # Package would be ignored # 2024-06-22T14:00:38,601 ############################ 2024-06-22T14:00:38,602 Python recognizes 'multiqc.modules.anglerfish' as an importable package[^1], 2024-06-22T14:00:38,602 but it is absent from setuptools' `packages` configuration. 2024-06-22T14:00:38,603 This leads to an ambiguous overall configuration. If you want to distribute this 2024-06-22T14:00:38,604 package, please make sure that 'multiqc.modules.anglerfish' is explicitly added 2024-06-22T14:00:38,604 to the `packages` configuration field. 2024-06-22T14:00:38,605 Alternatively, you can also rely on setuptools' discovery methods 2024-06-22T14:00:38,606 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-06-22T14:00:38,606 instead of `find_packages(...)`/`find:`). 2024-06-22T14:00:38,607 You can read more about "package discovery" on setuptools documentation page: 2024-06-22T14:00:38,608 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-06-22T14:00:38,609 If you don't want 'multiqc.modules.anglerfish' to be distributed and are 2024-06-22T14:00:38,609 already explicitly excluding 'multiqc.modules.anglerfish' via 2024-06-22T14:00:38,610 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-06-22T14:00:38,610 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-06-22T14:00:38,611 combination with a more fine grained `package-data` configuration. 2024-06-22T14:00:38,612 You can read more about "package data files" on setuptools documentation page: 2024-06-22T14:00:38,613 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-06-22T14:00:38,614 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-06-22T14:00:38,615 even if it does not contain any `.py` files. 2024-06-22T14:00:38,615 On the other hand, currently there is no concept of package data 2024-06-22T14:00:38,616 directory, all directories are treated like packages. 2024-06-22T14:00:38,617 ******************************************************************************** 2024-06-22T14:00:38,618 !! 2024-06-22T14:00:38,618 check.warn(importable) 2024-06-22T14:00:38,618 /tmp/pip-build-env-ye0gin6m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.bakta' is absent from the `packages` configuration. 2024-06-22T14:00:38,619 !! 2024-06-22T14:00:38,619 ******************************************************************************** 2024-06-22T14:00:38,620 ############################ 2024-06-22T14:00:38,620 # Package would be ignored # 2024-06-22T14:00:38,620 ############################ 2024-06-22T14:00:38,621 Python recognizes 'multiqc.modules.bakta' as an importable package[^1], 2024-06-22T14:00:38,621 but it is absent from setuptools' `packages` configuration. 2024-06-22T14:00:38,622 This leads to an ambiguous overall configuration. If you want to distribute this 2024-06-22T14:00:38,622 package, please make sure that 'multiqc.modules.bakta' is explicitly added 2024-06-22T14:00:38,622 to the `packages` configuration field. 2024-06-22T14:00:38,623 Alternatively, you can also rely on setuptools' discovery methods 2024-06-22T14:00:38,624 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-06-22T14:00:38,624 instead of `find_packages(...)`/`find:`). 2024-06-22T14:00:38,625 You can read more about "package discovery" on setuptools documentation page: 2024-06-22T14:00:38,626 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-06-22T14:00:38,627 If you don't want 'multiqc.modules.bakta' to be distributed and are 2024-06-22T14:00:38,627 already explicitly excluding 'multiqc.modules.bakta' via 2024-06-22T14:00:38,628 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-06-22T14:00:38,629 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-06-22T14:00:38,629 combination with a more fine grained `package-data` configuration. 2024-06-22T14:00:38,630 You can read more about "package data files" on setuptools documentation page: 2024-06-22T14:00:38,631 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-06-22T14:00:38,633 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-06-22T14:00:38,633 even if it does not contain any `.py` files. 2024-06-22T14:00:38,634 On the other hand, currently there is no concept of package data 2024-06-22T14:00:38,634 directory, all directories are treated like packages. 2024-06-22T14:00:38,635 ******************************************************************************** 2024-06-22T14:00:38,636 !! 2024-06-22T14:00:38,636 check.warn(importable) 2024-06-22T14:00:38,637 /tmp/pip-build-env-ye0gin6m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.bamdst' is absent from the `packages` configuration. 2024-06-22T14:00:38,637 !! 2024-06-22T14:00:38,638 ******************************************************************************** 2024-06-22T14:00:38,638 ############################ 2024-06-22T14:00:38,639 # Package would be ignored # 2024-06-22T14:00:38,639 ############################ 2024-06-22T14:00:38,640 Python recognizes 'multiqc.modules.bamdst' as an importable package[^1], 2024-06-22T14:00:38,640 but it is absent from setuptools' `packages` configuration. 2024-06-22T14:00:38,641 This leads to an ambiguous overall configuration. If you want to distribute this 2024-06-22T14:00:38,642 package, please make sure that 'multiqc.modules.bamdst' is explicitly added 2024-06-22T14:00:38,643 to the `packages` configuration field. 2024-06-22T14:00:38,643 Alternatively, you can also rely on setuptools' discovery methods 2024-06-22T14:00:38,644 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-06-22T14:00:38,644 instead of `find_packages(...)`/`find:`). 2024-06-22T14:00:38,645 You can read more about "package discovery" on setuptools documentation page: 2024-06-22T14:00:38,645 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-06-22T14:00:38,646 If you don't want 'multiqc.modules.bamdst' to be distributed and are 2024-06-22T14:00:38,646 already explicitly excluding 'multiqc.modules.bamdst' via 2024-06-22T14:00:38,647 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-06-22T14:00:38,647 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-06-22T14:00:38,647 combination with a more fine grained `package-data` configuration. 2024-06-22T14:00:38,648 You can read more about "package data files" on setuptools documentation page: 2024-06-22T14:00:38,649 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-06-22T14:00:38,650 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-06-22T14:00:38,650 even if it does not contain any `.py` files. 2024-06-22T14:00:38,650 On the other hand, currently there is no concept of package data 2024-06-22T14:00:38,651 directory, all directories are treated like packages. 2024-06-22T14:00:38,652 ******************************************************************************** 2024-06-22T14:00:38,652 !! 2024-06-22T14:00:38,653 check.warn(importable) 2024-06-22T14:00:38,653 /tmp/pip-build-env-ye0gin6m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.bamtools' is absent from the `packages` configuration. 2024-06-22T14:00:38,654 !! 2024-06-22T14:00:38,655 ******************************************************************************** 2024-06-22T14:00:38,655 ############################ 2024-06-22T14:00:38,656 # Package would be ignored # 2024-06-22T14:00:38,656 ############################ 2024-06-22T14:00:38,657 Python recognizes 'multiqc.modules.bamtools' as an importable package[^1], 2024-06-22T14:00:38,657 but it is absent from setuptools' `packages` configuration. 2024-06-22T14:00:38,658 This leads to an ambiguous overall configuration. If you want to distribute this 2024-06-22T14:00:38,658 package, please make sure that 'multiqc.modules.bamtools' is explicitly added 2024-06-22T14:00:38,659 to the `packages` configuration field. 2024-06-22T14:00:38,659 Alternatively, you can also rely on setuptools' discovery methods 2024-06-22T14:00:38,660 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-06-22T14:00:38,660 instead of `find_packages(...)`/`find:`). 2024-06-22T14:00:38,661 You can read more about "package discovery" on setuptools documentation page: 2024-06-22T14:00:38,662 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-06-22T14:00:38,663 If you don't want 'multiqc.modules.bamtools' to be distributed and are 2024-06-22T14:00:38,664 already explicitly excluding 'multiqc.modules.bamtools' via 2024-06-22T14:00:38,664 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-06-22T14:00:38,665 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-06-22T14:00:38,665 combination with a more fine grained `package-data` configuration. 2024-06-22T14:00:38,667 You can read more about "package data files" on setuptools documentation page: 2024-06-22T14:00:38,667 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-06-22T14:00:38,668 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-06-22T14:00:38,668 even if it does not contain any `.py` files. 2024-06-22T14:00:38,669 On the other hand, currently there is no concept of package data 2024-06-22T14:00:38,669 directory, all directories are treated like packages. 2024-06-22T14:00:38,669 ******************************************************************************** 2024-06-22T14:00:38,670 !! 2024-06-22T14:00:38,670 check.warn(importable) 2024-06-22T14:00:38,671 /tmp/pip-build-env-ye0gin6m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.bbduk' is absent from the `packages` configuration. 2024-06-22T14:00:38,671 !! 2024-06-22T14:00:38,672 ******************************************************************************** 2024-06-22T14:00:38,672 ############################ 2024-06-22T14:00:38,673 # Package would be ignored # 2024-06-22T14:00:38,673 ############################ 2024-06-22T14:00:38,673 Python recognizes 'multiqc.modules.bbduk' as an importable package[^1], 2024-06-22T14:00:38,674 but it is absent from setuptools' `packages` configuration. 2024-06-22T14:00:38,675 This leads to an ambiguous overall configuration. If you want to distribute this 2024-06-22T14:00:38,675 package, please make sure that 'multiqc.modules.bbduk' is explicitly added 2024-06-22T14:00:38,676 to the `packages` configuration field. 2024-06-22T14:00:38,676 Alternatively, you can also rely on setuptools' discovery methods 2024-06-22T14:00:38,677 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-06-22T14:00:38,677 instead of `find_packages(...)`/`find:`). 2024-06-22T14:00:38,678 You can read more about "package discovery" on setuptools documentation page: 2024-06-22T14:00:38,679 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-06-22T14:00:38,680 If you don't want 'multiqc.modules.bbduk' to be distributed and are 2024-06-22T14:00:38,681 already explicitly excluding 'multiqc.modules.bbduk' via 2024-06-22T14:00:38,681 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-06-22T14:00:38,682 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-06-22T14:00:38,682 combination with a more fine grained `package-data` configuration. 2024-06-22T14:00:38,683 You can read more about "package data files" on setuptools documentation page: 2024-06-22T14:00:38,684 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-06-22T14:00:38,686 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-06-22T14:00:38,687 even if it does not contain any `.py` files. 2024-06-22T14:00:38,687 On the other hand, currently there is no concept of package data 2024-06-22T14:00:38,688 directory, all directories are treated like packages. 2024-06-22T14:00:38,688 ******************************************************************************** 2024-06-22T14:00:38,689 !! 2024-06-22T14:00:38,689 check.warn(importable) 2024-06-22T14:00:38,690 /tmp/pip-build-env-ye0gin6m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.bbmap' is absent from the `packages` configuration. 2024-06-22T14:00:38,690 !! 2024-06-22T14:00:38,691 ******************************************************************************** 2024-06-22T14:00:38,692 ############################ 2024-06-22T14:00:38,692 # Package would be ignored # 2024-06-22T14:00:38,693 ############################ 2024-06-22T14:00:38,693 Python recognizes 'multiqc.modules.bbmap' as an importable package[^1], 2024-06-22T14:00:38,694 but it is absent from setuptools' `packages` configuration. 2024-06-22T14:00:38,694 This leads to an ambiguous overall configuration. If you want to distribute this 2024-06-22T14:00:38,695 package, please make sure that 'multiqc.modules.bbmap' is explicitly added 2024-06-22T14:00:38,695 to the `packages` configuration field. 2024-06-22T14:00:38,696 Alternatively, you can also rely on setuptools' discovery methods 2024-06-22T14:00:38,696 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-06-22T14:00:38,696 instead of `find_packages(...)`/`find:`). 2024-06-22T14:00:38,697 You can read more about "package discovery" on setuptools documentation page: 2024-06-22T14:00:38,698 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-06-22T14:00:38,698 If you don't want 'multiqc.modules.bbmap' to be distributed and are 2024-06-22T14:00:38,699 already explicitly excluding 'multiqc.modules.bbmap' via 2024-06-22T14:00:38,699 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-06-22T14:00:38,699 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-06-22T14:00:38,700 combination with a more fine grained `package-data` configuration. 2024-06-22T14:00:38,700 You can read more about "package data files" on setuptools documentation page: 2024-06-22T14:00:38,701 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-06-22T14:00:38,702 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-06-22T14:00:38,703 even if it does not contain any `.py` files. 2024-06-22T14:00:38,703 On the other hand, currently there is no concept of package data 2024-06-22T14:00:38,704 directory, all directories are treated like packages. 2024-06-22T14:00:38,704 ******************************************************************************** 2024-06-22T14:00:38,705 !! 2024-06-22T14:00:38,706 check.warn(importable) 2024-06-22T14:00:38,706 /tmp/pip-build-env-ye0gin6m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.bcftools' is absent from the `packages` configuration. 2024-06-22T14:00:38,707 !! 2024-06-22T14:00:38,708 ******************************************************************************** 2024-06-22T14:00:38,708 ############################ 2024-06-22T14:00:38,709 # Package would be ignored # 2024-06-22T14:00:38,709 ############################ 2024-06-22T14:00:38,710 Python recognizes 'multiqc.modules.bcftools' as an importable package[^1], 2024-06-22T14:00:38,710 but it is absent from setuptools' `packages` configuration. 2024-06-22T14:00:38,711 This leads to an ambiguous overall configuration. If you want to distribute this 2024-06-22T14:00:38,711 package, please make sure that 'multiqc.modules.bcftools' is explicitly added 2024-06-22T14:00:38,712 to the `packages` configuration field. 2024-06-22T14:00:38,713 Alternatively, you can also rely on setuptools' discovery methods 2024-06-22T14:00:38,713 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-06-22T14:00:38,714 instead of `find_packages(...)`/`find:`). 2024-06-22T14:00:38,715 You can read more about "package discovery" on setuptools documentation page: 2024-06-22T14:00:38,716 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-06-22T14:00:38,717 If you don't want 'multiqc.modules.bcftools' to be distributed and are 2024-06-22T14:00:38,717 already explicitly excluding 'multiqc.modules.bcftools' via 2024-06-22T14:00:38,718 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-06-22T14:00:38,718 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-06-22T14:00:38,719 combination with a more fine grained `package-data` configuration. 2024-06-22T14:00:38,719 You can read more about "package data files" on setuptools documentation page: 2024-06-22T14:00:38,720 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-06-22T14:00:38,721 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-06-22T14:00:38,721 even if it does not contain any `.py` files. 2024-06-22T14:00:38,722 On the other hand, currently there is no concept of package data 2024-06-22T14:00:38,722 directory, all directories are treated like packages. 2024-06-22T14:00:38,722 ******************************************************************************** 2024-06-22T14:00:38,723 !! 2024-06-22T14:00:38,723 check.warn(importable) 2024-06-22T14:00:38,724 /tmp/pip-build-env-ye0gin6m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.bcl2fastq' is absent from the `packages` configuration. 2024-06-22T14:00:38,724 !! 2024-06-22T14:00:38,725 ******************************************************************************** 2024-06-22T14:00:38,725 ############################ 2024-06-22T14:00:38,725 # Package would be ignored # 2024-06-22T14:00:38,726 ############################ 2024-06-22T14:00:38,726 Python recognizes 'multiqc.modules.bcl2fastq' as an importable package[^1], 2024-06-22T14:00:38,727 but it is absent from setuptools' `packages` configuration. 2024-06-22T14:00:38,728 This leads to an ambiguous overall configuration. If you want to distribute this 2024-06-22T14:00:38,728 package, please make sure that 'multiqc.modules.bcl2fastq' is explicitly added 2024-06-22T14:00:38,729 to the `packages` configuration field. 2024-06-22T14:00:38,730 Alternatively, you can also rely on setuptools' discovery methods 2024-06-22T14:00:38,730 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-06-22T14:00:38,731 instead of `find_packages(...)`/`find:`). 2024-06-22T14:00:38,732 You can read more about "package discovery" on setuptools documentation page: 2024-06-22T14:00:38,733 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-06-22T14:00:38,734 If you don't want 'multiqc.modules.bcl2fastq' to be distributed and are 2024-06-22T14:00:38,734 already explicitly excluding 'multiqc.modules.bcl2fastq' via 2024-06-22T14:00:38,735 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-06-22T14:00:38,735 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-06-22T14:00:38,735 combination with a more fine grained `package-data` configuration. 2024-06-22T14:00:38,736 You can read more about "package data files" on setuptools documentation page: 2024-06-22T14:00:38,737 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-06-22T14:00:38,739 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-06-22T14:00:38,739 even if it does not contain any `.py` files. 2024-06-22T14:00:38,740 On the other hand, currently there is no concept of package data 2024-06-22T14:00:38,740 directory, all directories are treated like packages. 2024-06-22T14:00:38,741 ******************************************************************************** 2024-06-22T14:00:38,742 !! 2024-06-22T14:00:38,742 check.warn(importable) 2024-06-22T14:00:38,743 /tmp/pip-build-env-ye0gin6m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.bclconvert' is absent from the `packages` configuration. 2024-06-22T14:00:38,743 !! 2024-06-22T14:00:38,744 ******************************************************************************** 2024-06-22T14:00:38,744 ############################ 2024-06-22T14:00:38,745 # Package would be ignored # 2024-06-22T14:00:38,745 ############################ 2024-06-22T14:00:38,745 Python recognizes 'multiqc.modules.bclconvert' as an importable package[^1], 2024-06-22T14:00:38,746 but it is absent from setuptools' `packages` configuration. 2024-06-22T14:00:38,746 This leads to an ambiguous overall configuration. If you want to distribute this 2024-06-22T14:00:38,747 package, please make sure that 'multiqc.modules.bclconvert' is explicitly added 2024-06-22T14:00:38,747 to the `packages` configuration field. 2024-06-22T14:00:38,748 Alternatively, you can also rely on setuptools' discovery methods 2024-06-22T14:00:38,748 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-06-22T14:00:38,748 instead of `find_packages(...)`/`find:`). 2024-06-22T14:00:38,749 You can read more about "package discovery" on setuptools documentation page: 2024-06-22T14:00:38,750 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-06-22T14:00:38,750 If you don't want 'multiqc.modules.bclconvert' to be distributed and are 2024-06-22T14:00:38,751 already explicitly excluding 'multiqc.modules.bclconvert' via 2024-06-22T14:00:38,751 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-06-22T14:00:38,752 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-06-22T14:00:38,753 combination with a more fine grained `package-data` configuration. 2024-06-22T14:00:38,754 You can read more about "package data files" on setuptools documentation page: 2024-06-22T14:00:38,755 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-06-22T14:00:38,756 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-06-22T14:00:38,757 even if it does not contain any `.py` files. 2024-06-22T14:00:38,757 On the other hand, currently there is no concept of package data 2024-06-22T14:00:38,758 directory, all directories are treated like packages. 2024-06-22T14:00:38,758 ******************************************************************************** 2024-06-22T14:00:38,759 !! 2024-06-22T14:00:38,759 check.warn(importable) 2024-06-22T14:00:38,760 /tmp/pip-build-env-ye0gin6m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.biobambam2' is absent from the `packages` configuration. 2024-06-22T14:00:38,760 !! 2024-06-22T14:00:38,761 ******************************************************************************** 2024-06-22T14:00:38,762 ############################ 2024-06-22T14:00:38,762 # Package would be ignored # 2024-06-22T14:00:38,763 ############################ 2024-06-22T14:00:38,763 Python recognizes 'multiqc.modules.biobambam2' as an importable package[^1], 2024-06-22T14:00:38,763 but it is absent from setuptools' `packages` configuration. 2024-06-22T14:00:38,764 This leads to an ambiguous overall configuration. If you want to distribute this 2024-06-22T14:00:38,765 package, please make sure that 'multiqc.modules.biobambam2' is explicitly added 2024-06-22T14:00:38,765 to the `packages` configuration field. 2024-06-22T14:00:38,766 Alternatively, you can also rely on setuptools' discovery methods 2024-06-22T14:00:38,767 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-06-22T14:00:38,768 instead of `find_packages(...)`/`find:`). 2024-06-22T14:00:38,769 You can read more about "package discovery" on setuptools documentation page: 2024-06-22T14:00:38,769 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-06-22T14:00:38,770 If you don't want 'multiqc.modules.biobambam2' to be distributed and are 2024-06-22T14:00:38,770 already explicitly excluding 'multiqc.modules.biobambam2' via 2024-06-22T14:00:38,771 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-06-22T14:00:38,771 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-06-22T14:00:38,771 combination with a more fine grained `package-data` configuration. 2024-06-22T14:00:38,772 You can read more about "package data files" on setuptools documentation page: 2024-06-22T14:00:38,773 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-06-22T14:00:38,774 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-06-22T14:00:38,774 even if it does not contain any `.py` files. 2024-06-22T14:00:38,775 On the other hand, currently there is no concept of package data 2024-06-22T14:00:38,775 directory, all directories are treated like packages. 2024-06-22T14:00:38,775 ******************************************************************************** 2024-06-22T14:00:38,776 !! 2024-06-22T14:00:38,777 check.warn(importable) 2024-06-22T14:00:38,777 /tmp/pip-build-env-ye0gin6m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.biobloomtools' is absent from the `packages` configuration. 2024-06-22T14:00:38,778 !! 2024-06-22T14:00:38,779 ******************************************************************************** 2024-06-22T14:00:38,779 ############################ 2024-06-22T14:00:38,780 # Package would be ignored # 2024-06-22T14:00:38,780 ############################ 2024-06-22T14:00:38,781 Python recognizes 'multiqc.modules.biobloomtools' as an importable package[^1], 2024-06-22T14:00:38,781 but it is absent from setuptools' `packages` configuration. 2024-06-22T14:00:38,782 This leads to an ambiguous overall configuration. If you want to distribute this 2024-06-22T14:00:38,783 package, please make sure that 'multiqc.modules.biobloomtools' is explicitly added 2024-06-22T14:00:38,783 to the `packages` configuration field. 2024-06-22T14:00:38,784 Alternatively, you can also rely on setuptools' discovery methods 2024-06-22T14:00:38,785 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-06-22T14:00:38,785 instead of `find_packages(...)`/`find:`). 2024-06-22T14:00:38,786 You can read more about "package discovery" on setuptools documentation page: 2024-06-22T14:00:38,787 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-06-22T14:00:38,788 If you don't want 'multiqc.modules.biobloomtools' to be distributed and are 2024-06-22T14:00:38,788 already explicitly excluding 'multiqc.modules.biobloomtools' via 2024-06-22T14:00:38,789 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-06-22T14:00:38,789 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-06-22T14:00:38,790 combination with a more fine grained `package-data` configuration. 2024-06-22T14:00:38,791 You can read more about "package data files" on setuptools documentation page: 2024-06-22T14:00:38,792 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-06-22T14:00:38,794 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-06-22T14:00:38,794 even if it does not contain any `.py` files. 2024-06-22T14:00:38,795 On the other hand, currently there is no concept of package data 2024-06-22T14:00:38,795 directory, all directories are treated like packages. 2024-06-22T14:00:38,795 ******************************************************************************** 2024-06-22T14:00:38,796 !! 2024-06-22T14:00:38,796 check.warn(importable) 2024-06-22T14:00:38,797 /tmp/pip-build-env-ye0gin6m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.biscuit' is absent from the `packages` configuration. 2024-06-22T14:00:38,797 !! 2024-06-22T14:00:38,798 ******************************************************************************** 2024-06-22T14:00:38,798 ############################ 2024-06-22T14:00:38,798 # Package would be ignored # 2024-06-22T14:00:38,799 ############################ 2024-06-22T14:00:38,799 Python recognizes 'multiqc.modules.biscuit' as an importable package[^1], 2024-06-22T14:00:38,799 but it is absent from setuptools' `packages` configuration. 2024-06-22T14:00:38,800 This leads to an ambiguous overall configuration. If you want to distribute this 2024-06-22T14:00:38,800 package, please make sure that 'multiqc.modules.biscuit' is explicitly added 2024-06-22T14:00:38,801 to the `packages` configuration field. 2024-06-22T14:00:38,802 Alternatively, you can also rely on setuptools' discovery methods 2024-06-22T14:00:38,802 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-06-22T14:00:38,803 instead of `find_packages(...)`/`find:`). 2024-06-22T14:00:38,804 You can read more about "package discovery" on setuptools documentation page: 2024-06-22T14:00:38,805 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-06-22T14:00:38,806 If you don't want 'multiqc.modules.biscuit' to be distributed and are 2024-06-22T14:00:38,806 already explicitly excluding 'multiqc.modules.biscuit' via 2024-06-22T14:00:38,807 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-06-22T14:00:38,808 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-06-22T14:00:38,808 combination with a more fine grained `package-data` configuration. 2024-06-22T14:00:38,809 You can read more about "package data files" on setuptools documentation page: 2024-06-22T14:00:38,810 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-06-22T14:00:38,811 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-06-22T14:00:38,812 even if it does not contain any `.py` files. 2024-06-22T14:00:38,812 On the other hand, currently there is no concept of package data 2024-06-22T14:00:38,818 directory, all directories are treated like packages. 2024-06-22T14:00:38,818 ******************************************************************************** 2024-06-22T14:00:38,819 !! 2024-06-22T14:00:38,819 check.warn(importable) 2024-06-22T14:00:38,820 /tmp/pip-build-env-ye0gin6m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.bismark' is absent from the `packages` configuration. 2024-06-22T14:00:38,820 !! 2024-06-22T14:00:38,821 ******************************************************************************** 2024-06-22T14:00:38,822 ############################ 2024-06-22T14:00:38,822 # Package would be ignored # 2024-06-22T14:00:38,823 ############################ 2024-06-22T14:00:38,823 Python recognizes 'multiqc.modules.bismark' as an importable package[^1], 2024-06-22T14:00:38,824 but it is absent from setuptools' `packages` configuration. 2024-06-22T14:00:38,825 This leads to an ambiguous overall configuration. If you want to distribute this 2024-06-22T14:00:38,825 package, please make sure that 'multiqc.modules.bismark' is explicitly added 2024-06-22T14:00:38,826 to the `packages` configuration field. 2024-06-22T14:00:38,826 Alternatively, you can also rely on setuptools' discovery methods 2024-06-22T14:00:38,827 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-06-22T14:00:38,827 instead of `find_packages(...)`/`find:`). 2024-06-22T14:00:38,828 You can read more about "package discovery" on setuptools documentation page: 2024-06-22T14:00:38,828 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-06-22T14:00:38,829 If you don't want 'multiqc.modules.bismark' to be distributed and are 2024-06-22T14:00:38,830 already explicitly excluding 'multiqc.modules.bismark' via 2024-06-22T14:00:38,830 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-06-22T14:00:38,830 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-06-22T14:00:38,831 combination with a more fine grained `package-data` configuration. 2024-06-22T14:00:38,832 You can read more about "package data files" on setuptools documentation page: 2024-06-22T14:00:38,833 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-06-22T14:00:38,834 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-06-22T14:00:38,834 even if it does not contain any `.py` files. 2024-06-22T14:00:38,835 On the other hand, currently there is no concept of package data 2024-06-22T14:00:38,835 directory, all directories are treated like packages. 2024-06-22T14:00:38,836 ******************************************************************************** 2024-06-22T14:00:38,837 !! 2024-06-22T14:00:38,837 check.warn(importable) 2024-06-22T14:00:38,838 /tmp/pip-build-env-ye0gin6m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.bowtie1' is absent from the `packages` configuration. 2024-06-22T14:00:38,838 !! 2024-06-22T14:00:38,839 ******************************************************************************** 2024-06-22T14:00:38,839 ############################ 2024-06-22T14:00:38,840 # Package would be ignored # 2024-06-22T14:00:38,840 ############################ 2024-06-22T14:00:38,841 Python recognizes 'multiqc.modules.bowtie1' as an importable package[^1], 2024-06-22T14:00:38,841 but it is absent from setuptools' `packages` configuration. 2024-06-22T14:00:38,842 This leads to an ambiguous overall configuration. If you want to distribute this 2024-06-22T14:00:38,842 package, please make sure that 'multiqc.modules.bowtie1' is explicitly added 2024-06-22T14:00:38,843 to the `packages` configuration field. 2024-06-22T14:00:38,844 Alternatively, you can also rely on setuptools' discovery methods 2024-06-22T14:00:38,844 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-06-22T14:00:38,845 instead of `find_packages(...)`/`find:`). 2024-06-22T14:00:38,846 You can read more about "package discovery" on setuptools documentation page: 2024-06-22T14:00:38,846 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-06-22T14:00:38,848 If you don't want 'multiqc.modules.bowtie1' to be distributed and are 2024-06-22T14:00:38,848 already explicitly excluding 'multiqc.modules.bowtie1' via 2024-06-22T14:00:38,848 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-06-22T14:00:38,849 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-06-22T14:00:38,850 combination with a more fine grained `package-data` configuration. 2024-06-22T14:00:38,850 You can read more about "package data files" on setuptools documentation page: 2024-06-22T14:00:38,851 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-06-22T14:00:38,852 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-06-22T14:00:38,852 even if it does not contain any `.py` files. 2024-06-22T14:00:38,852 On the other hand, currently there is no concept of package data 2024-06-22T14:00:38,853 directory, all directories are treated like packages. 2024-06-22T14:00:38,853 ******************************************************************************** 2024-06-22T14:00:38,854 !! 2024-06-22T14:00:38,854 check.warn(importable) 2024-06-22T14:00:38,854 /tmp/pip-build-env-ye0gin6m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.bowtie2' is absent from the `packages` configuration. 2024-06-22T14:00:38,855 !! 2024-06-22T14:00:38,855 ******************************************************************************** 2024-06-22T14:00:38,856 ############################ 2024-06-22T14:00:38,856 # Package would be ignored # 2024-06-22T14:00:38,857 ############################ 2024-06-22T14:00:38,857 Python recognizes 'multiqc.modules.bowtie2' as an importable package[^1], 2024-06-22T14:00:38,857 but it is absent from setuptools' `packages` configuration. 2024-06-22T14:00:38,858 This leads to an ambiguous overall configuration. If you want to distribute this 2024-06-22T14:00:38,859 package, please make sure that 'multiqc.modules.bowtie2' is explicitly added 2024-06-22T14:00:38,859 to the `packages` configuration field. 2024-06-22T14:00:38,860 Alternatively, you can also rely on setuptools' discovery methods 2024-06-22T14:00:38,860 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-06-22T14:00:38,861 instead of `find_packages(...)`/`find:`). 2024-06-22T14:00:38,862 You can read more about "package discovery" on setuptools documentation page: 2024-06-22T14:00:38,863 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-06-22T14:00:38,864 If you don't want 'multiqc.modules.bowtie2' to be distributed and are 2024-06-22T14:00:38,864 already explicitly excluding 'multiqc.modules.bowtie2' via 2024-06-22T14:00:38,865 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-06-22T14:00:38,865 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-06-22T14:00:38,866 combination with a more fine grained `package-data` configuration. 2024-06-22T14:00:38,867 You can read more about "package data files" on setuptools documentation page: 2024-06-22T14:00:38,868 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-06-22T14:00:38,869 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-06-22T14:00:38,870 even if it does not contain any `.py` files. 2024-06-22T14:00:38,870 On the other hand, currently there is no concept of package data 2024-06-22T14:00:38,870 directory, all directories are treated like packages. 2024-06-22T14:00:38,871 ******************************************************************************** 2024-06-22T14:00:38,872 !! 2024-06-22T14:00:38,872 check.warn(importable) 2024-06-22T14:00:38,873 /tmp/pip-build-env-ye0gin6m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.bracken' is absent from the `packages` configuration. 2024-06-22T14:00:38,873 !! 2024-06-22T14:00:38,874 ******************************************************************************** 2024-06-22T14:00:38,875 ############################ 2024-06-22T14:00:38,875 # Package would be ignored # 2024-06-22T14:00:38,875 ############################ 2024-06-22T14:00:38,876 Python recognizes 'multiqc.modules.bracken' as an importable package[^1], 2024-06-22T14:00:38,876 but it is absent from setuptools' `packages` configuration. 2024-06-22T14:00:38,877 This leads to an ambiguous overall configuration. If you want to distribute this 2024-06-22T14:00:38,877 package, please make sure that 'multiqc.modules.bracken' is explicitly added 2024-06-22T14:00:38,877 to the `packages` configuration field. 2024-06-22T14:00:38,878 Alternatively, you can also rely on setuptools' discovery methods 2024-06-22T14:00:38,878 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-06-22T14:00:38,879 instead of `find_packages(...)`/`find:`). 2024-06-22T14:00:38,879 You can read more about "package discovery" on setuptools documentation page: 2024-06-22T14:00:38,880 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-06-22T14:00:38,881 If you don't want 'multiqc.modules.bracken' to be distributed and are 2024-06-22T14:00:38,881 already explicitly excluding 'multiqc.modules.bracken' via 2024-06-22T14:00:38,881 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-06-22T14:00:38,882 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-06-22T14:00:38,882 combination with a more fine grained `package-data` configuration. 2024-06-22T14:00:38,883 You can read more about "package data files" on setuptools documentation page: 2024-06-22T14:00:38,884 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-06-22T14:00:38,885 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-06-22T14:00:38,886 even if it does not contain any `.py` files. 2024-06-22T14:00:38,886 On the other hand, currently there is no concept of package data 2024-06-22T14:00:38,886 directory, all directories are treated like packages. 2024-06-22T14:00:38,887 ******************************************************************************** 2024-06-22T14:00:38,888 !! 2024-06-22T14:00:38,888 check.warn(importable) 2024-06-22T14:00:38,889 /tmp/pip-build-env-ye0gin6m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.busco' is absent from the `packages` configuration. 2024-06-22T14:00:38,889 !! 2024-06-22T14:00:38,890 ******************************************************************************** 2024-06-22T14:00:38,891 ############################ 2024-06-22T14:00:38,891 # Package would be ignored # 2024-06-22T14:00:38,892 ############################ 2024-06-22T14:00:38,892 Python recognizes 'multiqc.modules.busco' as an importable package[^1], 2024-06-22T14:00:38,892 but it is absent from setuptools' `packages` configuration. 2024-06-22T14:00:38,893 This leads to an ambiguous overall configuration. If you want to distribute this 2024-06-22T14:00:38,894 package, please make sure that 'multiqc.modules.busco' is explicitly added 2024-06-22T14:00:38,894 to the `packages` configuration field. 2024-06-22T14:00:38,895 Alternatively, you can also rely on setuptools' discovery methods 2024-06-22T14:00:38,896 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-06-22T14:00:38,896 instead of `find_packages(...)`/`find:`). 2024-06-22T14:00:38,897 You can read more about "package discovery" on setuptools documentation page: 2024-06-22T14:00:38,899 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-06-22T14:00:38,900 If you don't want 'multiqc.modules.busco' to be distributed and are 2024-06-22T14:00:38,900 already explicitly excluding 'multiqc.modules.busco' via 2024-06-22T14:00:38,900 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-06-22T14:00:38,901 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-06-22T14:00:38,901 combination with a more fine grained `package-data` configuration. 2024-06-22T14:00:38,902 You can read more about "package data files" on setuptools documentation page: 2024-06-22T14:00:38,902 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-06-22T14:00:38,903 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-06-22T14:00:38,904 even if it does not contain any `.py` files. 2024-06-22T14:00:38,904 On the other hand, currently there is no concept of package data 2024-06-22T14:00:38,904 directory, all directories are treated like packages. 2024-06-22T14:00:38,905 ******************************************************************************** 2024-06-22T14:00:38,905 !! 2024-06-22T14:00:38,906 check.warn(importable) 2024-06-22T14:00:38,906 /tmp/pip-build-env-ye0gin6m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.bustools' is absent from the `packages` configuration. 2024-06-22T14:00:38,907 !! 2024-06-22T14:00:38,907 ******************************************************************************** 2024-06-22T14:00:38,908 ############################ 2024-06-22T14:00:38,909 # Package would be ignored # 2024-06-22T14:00:38,909 ############################ 2024-06-22T14:00:38,909 Python recognizes 'multiqc.modules.bustools' as an importable package[^1], 2024-06-22T14:00:38,910 but it is absent from setuptools' `packages` configuration. 2024-06-22T14:00:38,911 This leads to an ambiguous overall configuration. If you want to distribute this 2024-06-22T14:00:38,911 package, please make sure that 'multiqc.modules.bustools' is explicitly added 2024-06-22T14:00:38,912 to the `packages` configuration field. 2024-06-22T14:00:38,913 Alternatively, you can also rely on setuptools' discovery methods 2024-06-22T14:00:38,913 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-06-22T14:00:38,914 instead of `find_packages(...)`/`find:`). 2024-06-22T14:00:38,915 You can read more about "package discovery" on setuptools documentation page: 2024-06-22T14:00:38,916 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-06-22T14:00:38,917 If you don't want 'multiqc.modules.bustools' to be distributed and are 2024-06-22T14:00:38,917 already explicitly excluding 'multiqc.modules.bustools' via 2024-06-22T14:00:38,918 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-06-22T14:00:38,918 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-06-22T14:00:38,918 combination with a more fine grained `package-data` configuration. 2024-06-22T14:00:38,919 You can read more about "package data files" on setuptools documentation page: 2024-06-22T14:00:38,920 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-06-22T14:00:38,922 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-06-22T14:00:38,922 even if it does not contain any `.py` files. 2024-06-22T14:00:38,923 On the other hand, currently there is no concept of package data 2024-06-22T14:00:38,923 directory, all directories are treated like packages. 2024-06-22T14:00:38,924 ******************************************************************************** 2024-06-22T14:00:38,925 !! 2024-06-22T14:00:38,925 check.warn(importable) 2024-06-22T14:00:38,926 /tmp/pip-build-env-ye0gin6m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.ccs' is absent from the `packages` configuration. 2024-06-22T14:00:38,926 !! 2024-06-22T14:00:38,926 ******************************************************************************** 2024-06-22T14:00:38,927 ############################ 2024-06-22T14:00:38,927 # Package would be ignored # 2024-06-22T14:00:38,927 ############################ 2024-06-22T14:00:38,928 Python recognizes 'multiqc.modules.ccs' as an importable package[^1], 2024-06-22T14:00:38,928 but it is absent from setuptools' `packages` configuration. 2024-06-22T14:00:38,929 This leads to an ambiguous overall configuration. If you want to distribute this 2024-06-22T14:00:38,929 package, please make sure that 'multiqc.modules.ccs' is explicitly added 2024-06-22T14:00:38,929 to the `packages` configuration field. 2024-06-22T14:00:38,930 Alternatively, you can also rely on setuptools' discovery methods 2024-06-22T14:00:38,930 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-06-22T14:00:38,931 instead of `find_packages(...)`/`find:`). 2024-06-22T14:00:38,932 You can read more about "package discovery" on setuptools documentation page: 2024-06-22T14:00:38,932 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-06-22T14:00:38,933 If you don't want 'multiqc.modules.ccs' to be distributed and are 2024-06-22T14:00:38,934 already explicitly excluding 'multiqc.modules.ccs' via 2024-06-22T14:00:38,934 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-06-22T14:00:38,934 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-06-22T14:00:38,935 combination with a more fine grained `package-data` configuration. 2024-06-22T14:00:38,936 You can read more about "package data files" on setuptools documentation page: 2024-06-22T14:00:38,936 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-06-22T14:00:38,938 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-06-22T14:00:38,938 even if it does not contain any `.py` files. 2024-06-22T14:00:38,939 On the other hand, currently there is no concept of package data 2024-06-22T14:00:38,939 directory, all directories are treated like packages. 2024-06-22T14:00:38,940 ******************************************************************************** 2024-06-22T14:00:38,941 !! 2024-06-22T14:00:38,941 check.warn(importable) 2024-06-22T14:00:38,942 /tmp/pip-build-env-ye0gin6m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.ccs.tests' is absent from the `packages` configuration. 2024-06-22T14:00:38,942 !! 2024-06-22T14:00:38,943 ******************************************************************************** 2024-06-22T14:00:38,943 ############################ 2024-06-22T14:00:38,944 # Package would be ignored # 2024-06-22T14:00:38,944 ############################ 2024-06-22T14:00:38,945 Python recognizes 'multiqc.modules.ccs.tests' as an importable package[^1], 2024-06-22T14:00:38,945 but it is absent from setuptools' `packages` configuration. 2024-06-22T14:00:38,946 This leads to an ambiguous overall configuration. If you want to distribute this 2024-06-22T14:00:38,947 package, please make sure that 'multiqc.modules.ccs.tests' is explicitly added 2024-06-22T14:00:38,947 to the `packages` configuration field. 2024-06-22T14:00:38,948 Alternatively, you can also rely on setuptools' discovery methods 2024-06-22T14:00:38,949 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-06-22T14:00:38,949 instead of `find_packages(...)`/`find:`). 2024-06-22T14:00:38,950 You can read more about "package discovery" on setuptools documentation page: 2024-06-22T14:00:38,950 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-06-22T14:00:38,951 If you don't want 'multiqc.modules.ccs.tests' to be distributed and are 2024-06-22T14:00:38,952 already explicitly excluding 'multiqc.modules.ccs.tests' via 2024-06-22T14:00:38,952 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-06-22T14:00:38,952 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-06-22T14:00:38,953 combination with a more fine grained `package-data` configuration. 2024-06-22T14:00:38,953 You can read more about "package data files" on setuptools documentation page: 2024-06-22T14:00:38,954 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-06-22T14:00:38,955 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-06-22T14:00:38,955 even if it does not contain any `.py` files. 2024-06-22T14:00:38,956 On the other hand, currently there is no concept of package data 2024-06-22T14:00:38,956 directory, all directories are treated like packages. 2024-06-22T14:00:38,957 ******************************************************************************** 2024-06-22T14:00:38,957 !! 2024-06-22T14:00:38,958 check.warn(importable) 2024-06-22T14:00:38,958 /tmp/pip-build-env-ye0gin6m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.cellranger' is absent from the `packages` configuration. 2024-06-22T14:00:38,959 !! 2024-06-22T14:00:38,960 ******************************************************************************** 2024-06-22T14:00:38,960 ############################ 2024-06-22T14:00:38,961 # Package would be ignored # 2024-06-22T14:00:38,961 ############################ 2024-06-22T14:00:38,962 Python recognizes 'multiqc.modules.cellranger' as an importable package[^1], 2024-06-22T14:00:38,962 but it is absent from setuptools' `packages` configuration. 2024-06-22T14:00:38,963 This leads to an ambiguous overall configuration. If you want to distribute this 2024-06-22T14:00:38,963 package, please make sure that 'multiqc.modules.cellranger' is explicitly added 2024-06-22T14:00:38,964 to the `packages` configuration field. 2024-06-22T14:00:38,965 Alternatively, you can also rely on setuptools' discovery methods 2024-06-22T14:00:38,965 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-06-22T14:00:38,966 instead of `find_packages(...)`/`find:`). 2024-06-22T14:00:38,967 You can read more about "package discovery" on setuptools documentation page: 2024-06-22T14:00:38,968 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-06-22T14:00:38,969 If you don't want 'multiqc.modules.cellranger' to be distributed and are 2024-06-22T14:00:38,969 already explicitly excluding 'multiqc.modules.cellranger' via 2024-06-22T14:00:38,969 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-06-22T14:00:38,970 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-06-22T14:00:38,970 combination with a more fine grained `package-data` configuration. 2024-06-22T14:00:38,971 You can read more about "package data files" on setuptools documentation page: 2024-06-22T14:00:38,973 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-06-22T14:00:38,974 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-06-22T14:00:38,974 even if it does not contain any `.py` files. 2024-06-22T14:00:38,975 On the other hand, currently there is no concept of package data 2024-06-22T14:00:38,975 directory, all directories are treated like packages. 2024-06-22T14:00:38,975 ******************************************************************************** 2024-06-22T14:00:38,976 !! 2024-06-22T14:00:38,976 check.warn(importable) 2024-06-22T14:00:38,976 /tmp/pip-build-env-ye0gin6m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.checkqc' is absent from the `packages` configuration. 2024-06-22T14:00:38,977 !! 2024-06-22T14:00:38,977 ******************************************************************************** 2024-06-22T14:00:38,978 ############################ 2024-06-22T14:00:38,978 # Package would be ignored # 2024-06-22T14:00:38,978 ############################ 2024-06-22T14:00:38,979 Python recognizes 'multiqc.modules.checkqc' as an importable package[^1], 2024-06-22T14:00:38,979 but it is absent from setuptools' `packages` configuration. 2024-06-22T14:00:38,980 This leads to an ambiguous overall configuration. If you want to distribute this 2024-06-22T14:00:38,980 package, please make sure that 'multiqc.modules.checkqc' is explicitly added 2024-06-22T14:00:38,981 to the `packages` configuration field. 2024-06-22T14:00:38,981 Alternatively, you can also rely on setuptools' discovery methods 2024-06-22T14:00:38,982 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-06-22T14:00:38,982 instead of `find_packages(...)`/`find:`). 2024-06-22T14:00:38,983 You can read more about "package discovery" on setuptools documentation page: 2024-06-22T14:00:38,984 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-06-22T14:00:38,985 If you don't want 'multiqc.modules.checkqc' to be distributed and are 2024-06-22T14:00:38,985 already explicitly excluding 'multiqc.modules.checkqc' via 2024-06-22T14:00:38,986 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-06-22T14:00:38,986 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-06-22T14:00:38,986 combination with a more fine grained `package-data` configuration. 2024-06-22T14:00:38,988 You can read more about "package data files" on setuptools documentation page: 2024-06-22T14:00:38,988 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-06-22T14:00:38,990 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-06-22T14:00:38,990 even if it does not contain any `.py` files. 2024-06-22T14:00:38,990 On the other hand, currently there is no concept of package data 2024-06-22T14:00:38,991 directory, all directories are treated like packages. 2024-06-22T14:00:38,992 ******************************************************************************** 2024-06-22T14:00:38,992 !! 2024-06-22T14:00:38,993 check.warn(importable) 2024-06-22T14:00:38,993 /tmp/pip-build-env-ye0gin6m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.clipandmerge' is absent from the `packages` configuration. 2024-06-22T14:00:38,994 !! 2024-06-22T14:00:38,995 ******************************************************************************** 2024-06-22T14:00:38,995 ############################ 2024-06-22T14:00:38,996 # Package would be ignored # 2024-06-22T14:00:38,996 ############################ 2024-06-22T14:00:38,997 Python recognizes 'multiqc.modules.clipandmerge' as an importable package[^1], 2024-06-22T14:00:38,998 but it is absent from setuptools' `packages` configuration. 2024-06-22T14:00:38,998 This leads to an ambiguous overall configuration. If you want to distribute this 2024-06-22T14:00:38,999 package, please make sure that 'multiqc.modules.clipandmerge' is explicitly added 2024-06-22T14:00:38,999 to the `packages` configuration field. 2024-06-22T14:00:39,000 Alternatively, you can also rely on setuptools' discovery methods 2024-06-22T14:00:39,000 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-06-22T14:00:39,001 instead of `find_packages(...)`/`find:`). 2024-06-22T14:00:39,001 You can read more about "package discovery" on setuptools documentation page: 2024-06-22T14:00:39,002 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-06-22T14:00:39,003 If you don't want 'multiqc.modules.clipandmerge' to be distributed and are 2024-06-22T14:00:39,003 already explicitly excluding 'multiqc.modules.clipandmerge' via 2024-06-22T14:00:39,004 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-06-22T14:00:39,004 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-06-22T14:00:39,004 combination with a more fine grained `package-data` configuration. 2024-06-22T14:00:39,005 You can read more about "package data files" on setuptools documentation page: 2024-06-22T14:00:39,006 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-06-22T14:00:39,007 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-06-22T14:00:39,007 even if it does not contain any `.py` files. 2024-06-22T14:00:39,008 On the other hand, currently there is no concept of package data 2024-06-22T14:00:39,008 directory, all directories are treated like packages. 2024-06-22T14:00:39,009 ******************************************************************************** 2024-06-22T14:00:39,010 !! 2024-06-22T14:00:39,010 check.warn(importable) 2024-06-22T14:00:39,010 /tmp/pip-build-env-ye0gin6m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.clusterflow' is absent from the `packages` configuration. 2024-06-22T14:00:39,011 !! 2024-06-22T14:00:39,012 ******************************************************************************** 2024-06-22T14:00:39,012 ############################ 2024-06-22T14:00:39,013 # Package would be ignored # 2024-06-22T14:00:39,013 ############################ 2024-06-22T14:00:39,014 Python recognizes 'multiqc.modules.clusterflow' as an importable package[^1], 2024-06-22T14:00:39,014 but it is absent from setuptools' `packages` configuration. 2024-06-22T14:00:39,015 This leads to an ambiguous overall configuration. If you want to distribute this 2024-06-22T14:00:39,015 package, please make sure that 'multiqc.modules.clusterflow' is explicitly added 2024-06-22T14:00:39,016 to the `packages` configuration field. 2024-06-22T14:00:39,017 Alternatively, you can also rely on setuptools' discovery methods 2024-06-22T14:00:39,017 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-06-22T14:00:39,017 instead of `find_packages(...)`/`find:`). 2024-06-22T14:00:39,018 You can read more about "package discovery" on setuptools documentation page: 2024-06-22T14:00:39,019 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-06-22T14:00:39,020 If you don't want 'multiqc.modules.clusterflow' to be distributed and are 2024-06-22T14:00:39,021 already explicitly excluding 'multiqc.modules.clusterflow' via 2024-06-22T14:00:39,021 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-06-22T14:00:39,022 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-06-22T14:00:39,022 combination with a more fine grained `package-data` configuration. 2024-06-22T14:00:39,023 You can read more about "package data files" on setuptools documentation page: 2024-06-22T14:00:39,024 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-06-22T14:00:39,025 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-06-22T14:00:39,025 even if it does not contain any `.py` files. 2024-06-22T14:00:39,025 On the other hand, currently there is no concept of package data 2024-06-22T14:00:39,026 directory, all directories are treated like packages. 2024-06-22T14:00:39,026 ******************************************************************************** 2024-06-22T14:00:39,027 !! 2024-06-22T14:00:39,027 check.warn(importable) 2024-06-22T14:00:39,028 /tmp/pip-build-env-ye0gin6m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.conpair' is absent from the `packages` configuration. 2024-06-22T14:00:39,028 !! 2024-06-22T14:00:39,029 ******************************************************************************** 2024-06-22T14:00:39,029 ############################ 2024-06-22T14:00:39,029 # Package would be ignored # 2024-06-22T14:00:39,030 ############################ 2024-06-22T14:00:39,030 Python recognizes 'multiqc.modules.conpair' as an importable package[^1], 2024-06-22T14:00:39,031 but it is absent from setuptools' `packages` configuration. 2024-06-22T14:00:39,032 This leads to an ambiguous overall configuration. If you want to distribute this 2024-06-22T14:00:39,032 package, please make sure that 'multiqc.modules.conpair' is explicitly added 2024-06-22T14:00:39,033 to the `packages` configuration field. 2024-06-22T14:00:39,035 Alternatively, you can also rely on setuptools' discovery methods 2024-06-22T14:00:39,035 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-06-22T14:00:39,036 instead of `find_packages(...)`/`find:`). 2024-06-22T14:00:39,037 You can read more about "package discovery" on setuptools documentation page: 2024-06-22T14:00:39,038 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-06-22T14:00:39,039 If you don't want 'multiqc.modules.conpair' to be distributed and are 2024-06-22T14:00:39,039 already explicitly excluding 'multiqc.modules.conpair' via 2024-06-22T14:00:39,040 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-06-22T14:00:39,040 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-06-22T14:00:39,041 combination with a more fine grained `package-data` configuration. 2024-06-22T14:00:39,042 You can read more about "package data files" on setuptools documentation page: 2024-06-22T14:00:39,043 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-06-22T14:00:39,045 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-06-22T14:00:39,045 even if it does not contain any `.py` files. 2024-06-22T14:00:39,046 On the other hand, currently there is no concept of package data 2024-06-22T14:00:39,046 directory, all directories are treated like packages. 2024-06-22T14:00:39,046 ******************************************************************************** 2024-06-22T14:00:39,048 !! 2024-06-22T14:00:39,048 check.warn(importable) 2024-06-22T14:00:39,049 /tmp/pip-build-env-ye0gin6m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.custom_content' is absent from the `packages` configuration. 2024-06-22T14:00:39,049 !! 2024-06-22T14:00:39,050 ******************************************************************************** 2024-06-22T14:00:39,050 ############################ 2024-06-22T14:00:39,051 # Package would be ignored # 2024-06-22T14:00:39,051 ############################ 2024-06-22T14:00:39,051 Python recognizes 'multiqc.modules.custom_content' as an importable package[^1], 2024-06-22T14:00:39,052 but it is absent from setuptools' `packages` configuration. 2024-06-22T14:00:39,052 This leads to an ambiguous overall configuration. If you want to distribute this 2024-06-22T14:00:39,053 package, please make sure that 'multiqc.modules.custom_content' is explicitly added 2024-06-22T14:00:39,053 to the `packages` configuration field. 2024-06-22T14:00:39,054 Alternatively, you can also rely on setuptools' discovery methods 2024-06-22T14:00:39,054 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-06-22T14:00:39,055 instead of `find_packages(...)`/`find:`). 2024-06-22T14:00:39,055 You can read more about "package discovery" on setuptools documentation page: 2024-06-22T14:00:39,056 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-06-22T14:00:39,057 If you don't want 'multiqc.modules.custom_content' to be distributed and are 2024-06-22T14:00:39,057 already explicitly excluding 'multiqc.modules.custom_content' via 2024-06-22T14:00:39,057 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-06-22T14:00:39,058 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-06-22T14:00:39,058 combination with a more fine grained `package-data` configuration. 2024-06-22T14:00:39,059 You can read more about "package data files" on setuptools documentation page: 2024-06-22T14:00:39,060 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-06-22T14:00:39,062 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-06-22T14:00:39,062 even if it does not contain any `.py` files. 2024-06-22T14:00:39,063 On the other hand, currently there is no concept of package data 2024-06-22T14:00:39,063 directory, all directories are treated like packages. 2024-06-22T14:00:39,063 ******************************************************************************** 2024-06-22T14:00:39,064 !! 2024-06-22T14:00:39,065 check.warn(importable) 2024-06-22T14:00:39,065 /tmp/pip-build-env-ye0gin6m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.cutadapt' is absent from the `packages` configuration. 2024-06-22T14:00:39,066 !! 2024-06-22T14:00:39,067 ******************************************************************************** 2024-06-22T14:00:39,067 ############################ 2024-06-22T14:00:39,067 # Package would be ignored # 2024-06-22T14:00:39,068 ############################ 2024-06-22T14:00:39,068 Python recognizes 'multiqc.modules.cutadapt' as an importable package[^1], 2024-06-22T14:00:39,069 but it is absent from setuptools' `packages` configuration. 2024-06-22T14:00:39,070 This leads to an ambiguous overall configuration. If you want to distribute this 2024-06-22T14:00:39,070 package, please make sure that 'multiqc.modules.cutadapt' is explicitly added 2024-06-22T14:00:39,071 to the `packages` configuration field. 2024-06-22T14:00:39,072 Alternatively, you can also rely on setuptools' discovery methods 2024-06-22T14:00:39,072 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-06-22T14:00:39,073 instead of `find_packages(...)`/`find:`). 2024-06-22T14:00:39,074 You can read more about "package discovery" on setuptools documentation page: 2024-06-22T14:00:39,075 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-06-22T14:00:39,076 If you don't want 'multiqc.modules.cutadapt' to be distributed and are 2024-06-22T14:00:39,076 already explicitly excluding 'multiqc.modules.cutadapt' via 2024-06-22T14:00:39,076 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-06-22T14:00:39,077 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-06-22T14:00:39,077 combination with a more fine grained `package-data` configuration. 2024-06-22T14:00:39,078 You can read more about "package data files" on setuptools documentation page: 2024-06-22T14:00:39,079 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-06-22T14:00:39,080 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-06-22T14:00:39,081 even if it does not contain any `.py` files. 2024-06-22T14:00:39,081 On the other hand, currently there is no concept of package data 2024-06-22T14:00:39,082 directory, all directories are treated like packages. 2024-06-22T14:00:39,082 ******************************************************************************** 2024-06-22T14:00:39,083 !! 2024-06-22T14:00:39,084 check.warn(importable) 2024-06-22T14:00:39,084 /tmp/pip-build-env-ye0gin6m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.damageprofiler' is absent from the `packages` configuration. 2024-06-22T14:00:39,085 !! 2024-06-22T14:00:39,086 ******************************************************************************** 2024-06-22T14:00:39,087 ############################ 2024-06-22T14:00:39,087 # Package would be ignored # 2024-06-22T14:00:39,088 ############################ 2024-06-22T14:00:39,088 Python recognizes 'multiqc.modules.damageprofiler' as an importable package[^1], 2024-06-22T14:00:39,089 but it is absent from setuptools' `packages` configuration. 2024-06-22T14:00:39,090 This leads to an ambiguous overall configuration. If you want to distribute this 2024-06-22T14:00:39,090 package, please make sure that 'multiqc.modules.damageprofiler' is explicitly added 2024-06-22T14:00:39,091 to the `packages` configuration field. 2024-06-22T14:00:39,092 Alternatively, you can also rely on setuptools' discovery methods 2024-06-22T14:00:39,092 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-06-22T14:00:39,093 instead of `find_packages(...)`/`find:`). 2024-06-22T14:00:39,093 You can read more about "package discovery" on setuptools documentation page: 2024-06-22T14:00:39,094 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-06-22T14:00:39,095 If you don't want 'multiqc.modules.damageprofiler' to be distributed and are 2024-06-22T14:00:39,096 already explicitly excluding 'multiqc.modules.damageprofiler' via 2024-06-22T14:00:39,096 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-06-22T14:00:39,097 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-06-22T14:00:39,097 combination with a more fine grained `package-data` configuration. 2024-06-22T14:00:39,098 You can read more about "package data files" on setuptools documentation page: 2024-06-22T14:00:39,099 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-06-22T14:00:39,101 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-06-22T14:00:39,102 even if it does not contain any `.py` files. 2024-06-22T14:00:39,103 On the other hand, currently there is no concept of package data 2024-06-22T14:00:39,103 directory, all directories are treated like packages. 2024-06-22T14:00:39,103 ******************************************************************************** 2024-06-22T14:00:39,104 !! 2024-06-22T14:00:39,104 check.warn(importable) 2024-06-22T14:00:39,105 /tmp/pip-build-env-ye0gin6m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.dedup' is absent from the `packages` configuration. 2024-06-22T14:00:39,105 !! 2024-06-22T14:00:39,106 ******************************************************************************** 2024-06-22T14:00:39,106 ############################ 2024-06-22T14:00:39,107 # Package would be ignored # 2024-06-22T14:00:39,107 ############################ 2024-06-22T14:00:39,107 Python recognizes 'multiqc.modules.dedup' as an importable package[^1], 2024-06-22T14:00:39,108 but it is absent from setuptools' `packages` configuration. 2024-06-22T14:00:39,109 This leads to an ambiguous overall configuration. If you want to distribute this 2024-06-22T14:00:39,109 package, please make sure that 'multiqc.modules.dedup' is explicitly added 2024-06-22T14:00:39,109 to the `packages` configuration field. 2024-06-22T14:00:39,110 Alternatively, you can also rely on setuptools' discovery methods 2024-06-22T14:00:39,111 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-06-22T14:00:39,111 instead of `find_packages(...)`/`find:`). 2024-06-22T14:00:39,112 You can read more about "package discovery" on setuptools documentation page: 2024-06-22T14:00:39,113 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-06-22T14:00:39,114 If you don't want 'multiqc.modules.dedup' to be distributed and are 2024-06-22T14:00:39,114 already explicitly excluding 'multiqc.modules.dedup' via 2024-06-22T14:00:39,115 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-06-22T14:00:39,115 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-06-22T14:00:39,116 combination with a more fine grained `package-data` configuration. 2024-06-22T14:00:39,117 You can read more about "package data files" on setuptools documentation page: 2024-06-22T14:00:39,118 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-06-22T14:00:39,119 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-06-22T14:00:39,120 even if it does not contain any `.py` files. 2024-06-22T14:00:39,120 On the other hand, currently there is no concept of package data 2024-06-22T14:00:39,121 directory, all directories are treated like packages. 2024-06-22T14:00:39,121 ******************************************************************************** 2024-06-22T14:00:39,122 !! 2024-06-22T14:00:39,123 check.warn(importable) 2024-06-22T14:00:39,123 /tmp/pip-build-env-ye0gin6m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.deeptools' is absent from the `packages` configuration. 2024-06-22T14:00:39,124 !! 2024-06-22T14:00:39,124 ******************************************************************************** 2024-06-22T14:00:39,125 ############################ 2024-06-22T14:00:39,126 # Package would be ignored # 2024-06-22T14:00:39,126 ############################ 2024-06-22T14:00:39,127 Python recognizes 'multiqc.modules.deeptools' as an importable package[^1], 2024-06-22T14:00:39,127 but it is absent from setuptools' `packages` configuration. 2024-06-22T14:00:39,128 This leads to an ambiguous overall configuration. If you want to distribute this 2024-06-22T14:00:39,129 package, please make sure that 'multiqc.modules.deeptools' is explicitly added 2024-06-22T14:00:39,129 to the `packages` configuration field. 2024-06-22T14:00:39,130 Alternatively, you can also rely on setuptools' discovery methods 2024-06-22T14:00:39,130 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-06-22T14:00:39,131 instead of `find_packages(...)`/`find:`). 2024-06-22T14:00:39,131 You can read more about "package discovery" on setuptools documentation page: 2024-06-22T14:00:39,132 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-06-22T14:00:39,133 If you don't want 'multiqc.modules.deeptools' to be distributed and are 2024-06-22T14:00:39,133 already explicitly excluding 'multiqc.modules.deeptools' via 2024-06-22T14:00:39,133 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-06-22T14:00:39,134 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-06-22T14:00:39,134 combination with a more fine grained `package-data` configuration. 2024-06-22T14:00:39,135 You can read more about "package data files" on setuptools documentation page: 2024-06-22T14:00:39,136 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-06-22T14:00:39,137 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-06-22T14:00:39,137 even if it does not contain any `.py` files. 2024-06-22T14:00:39,138 On the other hand, currently there is no concept of package data 2024-06-22T14:00:39,138 directory, all directories are treated like packages. 2024-06-22T14:00:39,139 ******************************************************************************** 2024-06-22T14:00:39,140 !! 2024-06-22T14:00:39,141 check.warn(importable) 2024-06-22T14:00:39,141 /tmp/pip-build-env-ye0gin6m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.diamond' is absent from the `packages` configuration. 2024-06-22T14:00:39,142 !! 2024-06-22T14:00:39,143 ******************************************************************************** 2024-06-22T14:00:39,143 ############################ 2024-06-22T14:00:39,144 # Package would be ignored # 2024-06-22T14:00:39,144 ############################ 2024-06-22T14:00:39,145 Python recognizes 'multiqc.modules.diamond' as an importable package[^1], 2024-06-22T14:00:39,145 but it is absent from setuptools' `packages` configuration. 2024-06-22T14:00:39,146 This leads to an ambiguous overall configuration. If you want to distribute this 2024-06-22T14:00:39,147 package, please make sure that 'multiqc.modules.diamond' is explicitly added 2024-06-22T14:00:39,147 to the `packages` configuration field. 2024-06-22T14:00:39,148 Alternatively, you can also rely on setuptools' discovery methods 2024-06-22T14:00:39,148 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-06-22T14:00:39,149 instead of `find_packages(...)`/`find:`). 2024-06-22T14:00:39,150 You can read more about "package discovery" on setuptools documentation page: 2024-06-22T14:00:39,151 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-06-22T14:00:39,152 If you don't want 'multiqc.modules.diamond' to be distributed and are 2024-06-22T14:00:39,152 already explicitly excluding 'multiqc.modules.diamond' via 2024-06-22T14:00:39,153 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-06-22T14:00:39,154 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-06-22T14:00:39,154 combination with a more fine grained `package-data` configuration. 2024-06-22T14:00:39,155 You can read more about "package data files" on setuptools documentation page: 2024-06-22T14:00:39,156 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-06-22T14:00:39,157 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-06-22T14:00:39,157 even if it does not contain any `.py` files. 2024-06-22T14:00:39,158 On the other hand, currently there is no concept of package data 2024-06-22T14:00:39,158 directory, all directories are treated like packages. 2024-06-22T14:00:39,158 ******************************************************************************** 2024-06-22T14:00:39,159 !! 2024-06-22T14:00:39,159 check.warn(importable) 2024-06-22T14:00:39,160 /tmp/pip-build-env-ye0gin6m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.disambiguate' is absent from the `packages` configuration. 2024-06-22T14:00:39,160 !! 2024-06-22T14:00:39,161 ******************************************************************************** 2024-06-22T14:00:39,161 ############################ 2024-06-22T14:00:39,162 # Package would be ignored # 2024-06-22T14:00:39,162 ############################ 2024-06-22T14:00:39,162 Python recognizes 'multiqc.modules.disambiguate' as an importable package[^1], 2024-06-22T14:00:39,163 but it is absent from setuptools' `packages` configuration. 2024-06-22T14:00:39,163 This leads to an ambiguous overall configuration. If you want to distribute this 2024-06-22T14:00:39,164 package, please make sure that 'multiqc.modules.disambiguate' is explicitly added 2024-06-22T14:00:39,164 to the `packages` configuration field. 2024-06-22T14:00:39,165 Alternatively, you can also rely on setuptools' discovery methods 2024-06-22T14:00:39,166 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-06-22T14:00:39,166 instead of `find_packages(...)`/`find:`). 2024-06-22T14:00:39,167 You can read more about "package discovery" on setuptools documentation page: 2024-06-22T14:00:39,168 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-06-22T14:00:39,169 If you don't want 'multiqc.modules.disambiguate' to be distributed and are 2024-06-22T14:00:39,170 already explicitly excluding 'multiqc.modules.disambiguate' via 2024-06-22T14:00:39,170 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-06-22T14:00:39,171 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-06-22T14:00:39,171 combination with a more fine grained `package-data` configuration. 2024-06-22T14:00:39,172 You can read more about "package data files" on setuptools documentation page: 2024-06-22T14:00:39,173 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-06-22T14:00:39,175 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-06-22T14:00:39,175 even if it does not contain any `.py` files. 2024-06-22T14:00:39,176 On the other hand, currently there is no concept of package data 2024-06-22T14:00:39,176 directory, all directories are treated like packages. 2024-06-22T14:00:39,177 ******************************************************************************** 2024-06-22T14:00:39,178 !! 2024-06-22T14:00:39,179 check.warn(importable) 2024-06-22T14:00:39,180 /tmp/pip-build-env-ye0gin6m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.dragen' is absent from the `packages` configuration. 2024-06-22T14:00:39,181 !! 2024-06-22T14:00:39,182 ******************************************************************************** 2024-06-22T14:00:39,182 ############################ 2024-06-22T14:00:39,182 # Package would be ignored # 2024-06-22T14:00:39,183 ############################ 2024-06-22T14:00:39,183 Python recognizes 'multiqc.modules.dragen' as an importable package[^1], 2024-06-22T14:00:39,183 but it is absent from setuptools' `packages` configuration. 2024-06-22T14:00:39,184 This leads to an ambiguous overall configuration. If you want to distribute this 2024-06-22T14:00:39,184 package, please make sure that 'multiqc.modules.dragen' is explicitly added 2024-06-22T14:00:39,184 to the `packages` configuration field. 2024-06-22T14:00:39,185 Alternatively, you can also rely on setuptools' discovery methods 2024-06-22T14:00:39,185 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-06-22T14:00:39,186 instead of `find_packages(...)`/`find:`). 2024-06-22T14:00:39,186 You can read more about "package discovery" on setuptools documentation page: 2024-06-22T14:00:39,187 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-06-22T14:00:39,188 If you don't want 'multiqc.modules.dragen' to be distributed and are 2024-06-22T14:00:39,188 already explicitly excluding 'multiqc.modules.dragen' via 2024-06-22T14:00:39,189 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-06-22T14:00:39,189 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-06-22T14:00:39,190 combination with a more fine grained `package-data` configuration. 2024-06-22T14:00:39,191 You can read more about "package data files" on setuptools documentation page: 2024-06-22T14:00:39,192 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-06-22T14:00:39,193 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-06-22T14:00:39,194 even if it does not contain any `.py` files. 2024-06-22T14:00:39,194 On the other hand, currently there is no concept of package data 2024-06-22T14:00:39,195 directory, all directories are treated like packages. 2024-06-22T14:00:39,195 ******************************************************************************** 2024-06-22T14:00:39,196 !! 2024-06-22T14:00:39,196 check.warn(importable) 2024-06-22T14:00:39,197 /tmp/pip-build-env-ye0gin6m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.dragen.tests' is absent from the `packages` configuration. 2024-06-22T14:00:39,197 !! 2024-06-22T14:00:39,198 ******************************************************************************** 2024-06-22T14:00:39,199 ############################ 2024-06-22T14:00:39,199 # Package would be ignored # 2024-06-22T14:00:39,199 ############################ 2024-06-22T14:00:39,200 Python recognizes 'multiqc.modules.dragen.tests' as an importable package[^1], 2024-06-22T14:00:39,200 but it is absent from setuptools' `packages` configuration. 2024-06-22T14:00:39,201 This leads to an ambiguous overall configuration. If you want to distribute this 2024-06-22T14:00:39,201 package, please make sure that 'multiqc.modules.dragen.tests' is explicitly added 2024-06-22T14:00:39,202 to the `packages` configuration field. 2024-06-22T14:00:39,203 Alternatively, you can also rely on setuptools' discovery methods 2024-06-22T14:00:39,203 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-06-22T14:00:39,204 instead of `find_packages(...)`/`find:`). 2024-06-22T14:00:39,205 You can read more about "package discovery" on setuptools documentation page: 2024-06-22T14:00:39,206 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-06-22T14:00:39,206 If you don't want 'multiqc.modules.dragen.tests' to be distributed and are 2024-06-22T14:00:39,207 already explicitly excluding 'multiqc.modules.dragen.tests' via 2024-06-22T14:00:39,207 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-06-22T14:00:39,207 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-06-22T14:00:39,207 combination with a more fine grained `package-data` configuration. 2024-06-22T14:00:39,208 You can read more about "package data files" on setuptools documentation page: 2024-06-22T14:00:39,209 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-06-22T14:00:39,210 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-06-22T14:00:39,210 even if it does not contain any `.py` files. 2024-06-22T14:00:39,210 On the other hand, currently there is no concept of package data 2024-06-22T14:00:39,211 directory, all directories are treated like packages. 2024-06-22T14:00:39,211 ******************************************************************************** 2024-06-22T14:00:39,212 !! 2024-06-22T14:00:39,212 check.warn(importable) 2024-06-22T14:00:39,212 /tmp/pip-build-env-ye0gin6m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.dragen_fastqc' is absent from the `packages` configuration. 2024-06-22T14:00:39,213 !! 2024-06-22T14:00:39,214 ******************************************************************************** 2024-06-22T14:00:39,214 ############################ 2024-06-22T14:00:39,215 # Package would be ignored # 2024-06-22T14:00:39,215 ############################ 2024-06-22T14:00:39,215 Python recognizes 'multiqc.modules.dragen_fastqc' as an importable package[^1], 2024-06-22T14:00:39,216 but it is absent from setuptools' `packages` configuration. 2024-06-22T14:00:39,217 This leads to an ambiguous overall configuration. If you want to distribute this 2024-06-22T14:00:39,217 package, please make sure that 'multiqc.modules.dragen_fastqc' is explicitly added 2024-06-22T14:00:39,218 to the `packages` configuration field. 2024-06-22T14:00:39,218 Alternatively, you can also rely on setuptools' discovery methods 2024-06-22T14:00:39,219 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-06-22T14:00:39,219 instead of `find_packages(...)`/`find:`). 2024-06-22T14:00:39,220 You can read more about "package discovery" on setuptools documentation page: 2024-06-22T14:00:39,221 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-06-22T14:00:39,222 If you don't want 'multiqc.modules.dragen_fastqc' to be distributed and are 2024-06-22T14:00:39,222 already explicitly excluding 'multiqc.modules.dragen_fastqc' via 2024-06-22T14:00:39,223 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-06-22T14:00:39,223 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-06-22T14:00:39,224 combination with a more fine grained `package-data` configuration. 2024-06-22T14:00:39,224 You can read more about "package data files" on setuptools documentation page: 2024-06-22T14:00:39,225 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-06-22T14:00:39,227 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-06-22T14:00:39,227 even if it does not contain any `.py` files. 2024-06-22T14:00:39,228 On the other hand, currently there is no concept of package data 2024-06-22T14:00:39,228 directory, all directories are treated like packages. 2024-06-22T14:00:39,229 ******************************************************************************** 2024-06-22T14:00:39,230 !! 2024-06-22T14:00:39,230 check.warn(importable) 2024-06-22T14:00:39,230 /tmp/pip-build-env-ye0gin6m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.dragen_fastqc.assets.js' is absent from the `packages` configuration. 2024-06-22T14:00:39,231 !! 2024-06-22T14:00:39,231 ******************************************************************************** 2024-06-22T14:00:39,232 ############################ 2024-06-22T14:00:39,232 # Package would be ignored # 2024-06-22T14:00:39,232 ############################ 2024-06-22T14:00:39,233 Python recognizes 'multiqc.modules.dragen_fastqc.assets.js' as an importable package[^1], 2024-06-22T14:00:39,233 but it is absent from setuptools' `packages` configuration. 2024-06-22T14:00:39,234 This leads to an ambiguous overall configuration. If you want to distribute this 2024-06-22T14:00:39,234 package, please make sure that 'multiqc.modules.dragen_fastqc.assets.js' is explicitly added 2024-06-22T14:00:39,235 to the `packages` configuration field. 2024-06-22T14:00:39,235 Alternatively, you can also rely on setuptools' discovery methods 2024-06-22T14:00:39,236 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-06-22T14:00:39,236 instead of `find_packages(...)`/`find:`). 2024-06-22T14:00:39,237 You can read more about "package discovery" on setuptools documentation page: 2024-06-22T14:00:39,238 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-06-22T14:00:39,238 If you don't want 'multiqc.modules.dragen_fastqc.assets.js' to be distributed and are 2024-06-22T14:00:39,239 already explicitly excluding 'multiqc.modules.dragen_fastqc.assets.js' via 2024-06-22T14:00:39,239 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-06-22T14:00:39,240 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-06-22T14:00:39,240 combination with a more fine grained `package-data` configuration. 2024-06-22T14:00:39,241 You can read more about "package data files" on setuptools documentation page: 2024-06-22T14:00:39,242 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-06-22T14:00:39,244 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-06-22T14:00:39,244 even if it does not contain any `.py` files. 2024-06-22T14:00:39,245 On the other hand, currently there is no concept of package data 2024-06-22T14:00:39,246 directory, all directories are treated like packages. 2024-06-22T14:00:39,246 ******************************************************************************** 2024-06-22T14:00:39,247 !! 2024-06-22T14:00:39,248 check.warn(importable) 2024-06-22T14:00:39,248 /tmp/pip-build-env-ye0gin6m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.eigenstratdatabasetools' is absent from the `packages` configuration. 2024-06-22T14:00:39,249 !! 2024-06-22T14:00:39,250 ******************************************************************************** 2024-06-22T14:00:39,250 ############################ 2024-06-22T14:00:39,251 # Package would be ignored # 2024-06-22T14:00:39,251 ############################ 2024-06-22T14:00:39,252 Python recognizes 'multiqc.modules.eigenstratdatabasetools' as an importable package[^1], 2024-06-22T14:00:39,252 but it is absent from setuptools' `packages` configuration. 2024-06-22T14:00:39,253 This leads to an ambiguous overall configuration. If you want to distribute this 2024-06-22T14:00:39,254 package, please make sure that 'multiqc.modules.eigenstratdatabasetools' is explicitly added 2024-06-22T14:00:39,254 to the `packages` configuration field. 2024-06-22T14:00:39,255 Alternatively, you can also rely on setuptools' discovery methods 2024-06-22T14:00:39,255 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-06-22T14:00:39,256 instead of `find_packages(...)`/`find:`). 2024-06-22T14:00:39,256 You can read more about "package discovery" on setuptools documentation page: 2024-06-22T14:00:39,257 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-06-22T14:00:39,258 If you don't want 'multiqc.modules.eigenstratdatabasetools' to be distributed and are 2024-06-22T14:00:39,258 already explicitly excluding 'multiqc.modules.eigenstratdatabasetools' via 2024-06-22T14:00:39,259 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-06-22T14:00:39,259 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-06-22T14:00:39,259 combination with a more fine grained `package-data` configuration. 2024-06-22T14:00:39,260 You can read more about "package data files" on setuptools documentation page: 2024-06-22T14:00:39,261 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-06-22T14:00:39,262 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-06-22T14:00:39,262 even if it does not contain any `.py` files. 2024-06-22T14:00:39,263 On the other hand, currently there is no concept of package data 2024-06-22T14:00:39,263 directory, all directories are treated like packages. 2024-06-22T14:00:39,264 ******************************************************************************** 2024-06-22T14:00:39,264 !! 2024-06-22T14:00:39,265 check.warn(importable) 2024-06-22T14:00:39,265 /tmp/pip-build-env-ye0gin6m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.fastp' is absent from the `packages` configuration. 2024-06-22T14:00:39,266 !! 2024-06-22T14:00:39,267 ******************************************************************************** 2024-06-22T14:00:39,267 ############################ 2024-06-22T14:00:39,268 # Package would be ignored # 2024-06-22T14:00:39,268 ############################ 2024-06-22T14:00:39,269 Python recognizes 'multiqc.modules.fastp' as an importable package[^1], 2024-06-22T14:00:39,269 but it is absent from setuptools' `packages` configuration. 2024-06-22T14:00:39,270 This leads to an ambiguous overall configuration. If you want to distribute this 2024-06-22T14:00:39,271 package, please make sure that 'multiqc.modules.fastp' is explicitly added 2024-06-22T14:00:39,271 to the `packages` configuration field. 2024-06-22T14:00:39,272 Alternatively, you can also rely on setuptools' discovery methods 2024-06-22T14:00:39,273 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-06-22T14:00:39,273 instead of `find_packages(...)`/`find:`). 2024-06-22T14:00:39,274 You can read more about "package discovery" on setuptools documentation page: 2024-06-22T14:00:39,275 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-06-22T14:00:39,276 If you don't want 'multiqc.modules.fastp' to be distributed and are 2024-06-22T14:00:39,277 already explicitly excluding 'multiqc.modules.fastp' via 2024-06-22T14:00:39,277 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-06-22T14:00:39,278 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-06-22T14:00:39,278 combination with a more fine grained `package-data` configuration. 2024-06-22T14:00:39,279 You can read more about "package data files" on setuptools documentation page: 2024-06-22T14:00:39,280 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-06-22T14:00:39,281 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-06-22T14:00:39,281 even if it does not contain any `.py` files. 2024-06-22T14:00:39,282 On the other hand, currently there is no concept of package data 2024-06-22T14:00:39,282 directory, all directories are treated like packages. 2024-06-22T14:00:39,282 ******************************************************************************** 2024-06-22T14:00:39,283 !! 2024-06-22T14:00:39,283 check.warn(importable) 2024-06-22T14:00:39,284 /tmp/pip-build-env-ye0gin6m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.fastq_screen' is absent from the `packages` configuration. 2024-06-22T14:00:39,284 !! 2024-06-22T14:00:39,285 ******************************************************************************** 2024-06-22T14:00:39,285 ############################ 2024-06-22T14:00:39,285 # Package would be ignored # 2024-06-22T14:00:39,286 ############################ 2024-06-22T14:00:39,286 Python recognizes 'multiqc.modules.fastq_screen' as an importable package[^1], 2024-06-22T14:00:39,287 but it is absent from setuptools' `packages` configuration. 2024-06-22T14:00:39,288 This leads to an ambiguous overall configuration. If you want to distribute this 2024-06-22T14:00:39,288 package, please make sure that 'multiqc.modules.fastq_screen' is explicitly added 2024-06-22T14:00:39,288 to the `packages` configuration field. 2024-06-22T14:00:39,289 Alternatively, you can also rely on setuptools' discovery methods 2024-06-22T14:00:39,290 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-06-22T14:00:39,290 instead of `find_packages(...)`/`find:`). 2024-06-22T14:00:39,291 You can read more about "package discovery" on setuptools documentation page: 2024-06-22T14:00:39,292 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-06-22T14:00:39,293 If you don't want 'multiqc.modules.fastq_screen' to be distributed and are 2024-06-22T14:00:39,294 already explicitly excluding 'multiqc.modules.fastq_screen' via 2024-06-22T14:00:39,294 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-06-22T14:00:39,295 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-06-22T14:00:39,295 combination with a more fine grained `package-data` configuration. 2024-06-22T14:00:39,296 You can read more about "package data files" on setuptools documentation page: 2024-06-22T14:00:39,297 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-06-22T14:00:39,298 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-06-22T14:00:39,299 even if it does not contain any `.py` files. 2024-06-22T14:00:39,299 On the other hand, currently there is no concept of package data 2024-06-22T14:00:39,300 directory, all directories are treated like packages. 2024-06-22T14:00:39,300 ******************************************************************************** 2024-06-22T14:00:39,301 !! 2024-06-22T14:00:39,302 check.warn(importable) 2024-06-22T14:00:39,302 /tmp/pip-build-env-ye0gin6m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.fastqc' is absent from the `packages` configuration. 2024-06-22T14:00:39,303 !! 2024-06-22T14:00:39,304 ******************************************************************************** 2024-06-22T14:00:39,305 ############################ 2024-06-22T14:00:39,305 # Package would be ignored # 2024-06-22T14:00:39,306 ############################ 2024-06-22T14:00:39,306 Python recognizes 'multiqc.modules.fastqc' as an importable package[^1], 2024-06-22T14:00:39,306 but it is absent from setuptools' `packages` configuration. 2024-06-22T14:00:39,307 This leads to an ambiguous overall configuration. If you want to distribute this 2024-06-22T14:00:39,307 package, please make sure that 'multiqc.modules.fastqc' is explicitly added 2024-06-22T14:00:39,308 to the `packages` configuration field. 2024-06-22T14:00:39,308 Alternatively, you can also rely on setuptools' discovery methods 2024-06-22T14:00:39,309 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-06-22T14:00:39,309 instead of `find_packages(...)`/`find:`). 2024-06-22T14:00:39,310 You can read more about "package discovery" on setuptools documentation page: 2024-06-22T14:00:39,311 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-06-22T14:00:39,311 If you don't want 'multiqc.modules.fastqc' to be distributed and are 2024-06-22T14:00:39,312 already explicitly excluding 'multiqc.modules.fastqc' via 2024-06-22T14:00:39,312 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-06-22T14:00:39,313 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-06-22T14:00:39,313 combination with a more fine grained `package-data` configuration. 2024-06-22T14:00:39,314 You can read more about "package data files" on setuptools documentation page: 2024-06-22T14:00:39,315 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-06-22T14:00:39,317 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-06-22T14:00:39,317 even if it does not contain any `.py` files. 2024-06-22T14:00:39,318 On the other hand, currently there is no concept of package data 2024-06-22T14:00:39,318 directory, all directories are treated like packages. 2024-06-22T14:00:39,319 ******************************************************************************** 2024-06-22T14:00:39,320 !! 2024-06-22T14:00:39,320 check.warn(importable) 2024-06-22T14:00:39,321 /tmp/pip-build-env-ye0gin6m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.fastqc.assets.css' is absent from the `packages` configuration. 2024-06-22T14:00:39,321 !! 2024-06-22T14:00:39,322 ******************************************************************************** 2024-06-22T14:00:39,323 ############################ 2024-06-22T14:00:39,323 # Package would be ignored # 2024-06-22T14:00:39,323 ############################ 2024-06-22T14:00:39,324 Python recognizes 'multiqc.modules.fastqc.assets.css' as an importable package[^1], 2024-06-22T14:00:39,324 but it is absent from setuptools' `packages` configuration. 2024-06-22T14:00:39,325 This leads to an ambiguous overall configuration. If you want to distribute this 2024-06-22T14:00:39,326 package, please make sure that 'multiqc.modules.fastqc.assets.css' is explicitly added 2024-06-22T14:00:39,326 to the `packages` configuration field. 2024-06-22T14:00:39,327 Alternatively, you can also rely on setuptools' discovery methods 2024-06-22T14:00:39,327 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-06-22T14:00:39,328 instead of `find_packages(...)`/`find:`). 2024-06-22T14:00:39,329 You can read more about "package discovery" on setuptools documentation page: 2024-06-22T14:00:39,330 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-06-22T14:00:39,331 If you don't want 'multiqc.modules.fastqc.assets.css' to be distributed and are 2024-06-22T14:00:39,331 already explicitly excluding 'multiqc.modules.fastqc.assets.css' via 2024-06-22T14:00:39,331 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-06-22T14:00:39,332 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-06-22T14:00:39,332 combination with a more fine grained `package-data` configuration. 2024-06-22T14:00:39,333 You can read more about "package data files" on setuptools documentation page: 2024-06-22T14:00:39,334 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-06-22T14:00:39,335 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-06-22T14:00:39,335 even if it does not contain any `.py` files. 2024-06-22T14:00:39,335 On the other hand, currently there is no concept of package data 2024-06-22T14:00:39,336 directory, all directories are treated like packages. 2024-06-22T14:00:39,336 ******************************************************************************** 2024-06-22T14:00:39,337 !! 2024-06-22T14:00:39,337 check.warn(importable) 2024-06-22T14:00:39,338 /tmp/pip-build-env-ye0gin6m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.fastqc.assets.js' is absent from the `packages` configuration. 2024-06-22T14:00:39,338 !! 2024-06-22T14:00:39,339 ******************************************************************************** 2024-06-22T14:00:39,339 ############################ 2024-06-22T14:00:39,340 # Package would be ignored # 2024-06-22T14:00:39,340 ############################ 2024-06-22T14:00:39,341 Python recognizes 'multiqc.modules.fastqc.assets.js' as an importable package[^1], 2024-06-22T14:00:39,341 but it is absent from setuptools' `packages` configuration. 2024-06-22T14:00:39,342 This leads to an ambiguous overall configuration. If you want to distribute this 2024-06-22T14:00:39,343 package, please make sure that 'multiqc.modules.fastqc.assets.js' is explicitly added 2024-06-22T14:00:39,343 to the `packages` configuration field. 2024-06-22T14:00:39,344 Alternatively, you can also rely on setuptools' discovery methods 2024-06-22T14:00:39,345 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-06-22T14:00:39,345 instead of `find_packages(...)`/`find:`). 2024-06-22T14:00:39,346 You can read more about "package discovery" on setuptools documentation page: 2024-06-22T14:00:39,347 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-06-22T14:00:39,348 If you don't want 'multiqc.modules.fastqc.assets.js' to be distributed and are 2024-06-22T14:00:39,349 already explicitly excluding 'multiqc.modules.fastqc.assets.js' via 2024-06-22T14:00:39,349 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-06-22T14:00:39,350 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-06-22T14:00:39,350 combination with a more fine grained `package-data` configuration. 2024-06-22T14:00:39,351 You can read more about "package data files" on setuptools documentation page: 2024-06-22T14:00:39,352 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-06-22T14:00:39,353 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-06-22T14:00:39,354 even if it does not contain any `.py` files. 2024-06-22T14:00:39,354 On the other hand, currently there is no concept of package data 2024-06-22T14:00:39,355 directory, all directories are treated like packages. 2024-06-22T14:00:39,355 ******************************************************************************** 2024-06-22T14:00:39,356 !! 2024-06-22T14:00:39,356 check.warn(importable) 2024-06-22T14:00:39,357 /tmp/pip-build-env-ye0gin6m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.fastqc.fastqc_theoretical_gc' is absent from the `packages` configuration. 2024-06-22T14:00:39,357 !! 2024-06-22T14:00:39,358 ******************************************************************************** 2024-06-22T14:00:39,358 ############################ 2024-06-22T14:00:39,358 # Package would be ignored # 2024-06-22T14:00:39,359 ############################ 2024-06-22T14:00:39,359 Python recognizes 'multiqc.modules.fastqc.fastqc_theoretical_gc' as an importable package[^1], 2024-06-22T14:00:39,360 but it is absent from setuptools' `packages` configuration. 2024-06-22T14:00:39,360 This leads to an ambiguous overall configuration. If you want to distribute this 2024-06-22T14:00:39,361 package, please make sure that 'multiqc.modules.fastqc.fastqc_theoretical_gc' is explicitly added 2024-06-22T14:00:39,361 to the `packages` configuration field. 2024-06-22T14:00:39,362 Alternatively, you can also rely on setuptools' discovery methods 2024-06-22T14:00:39,362 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-06-22T14:00:39,363 instead of `find_packages(...)`/`find:`). 2024-06-22T14:00:39,363 You can read more about "package discovery" on setuptools documentation page: 2024-06-22T14:00:39,364 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-06-22T14:00:39,365 If you don't want 'multiqc.modules.fastqc.fastqc_theoretical_gc' to be distributed and are 2024-06-22T14:00:39,366 already explicitly excluding 'multiqc.modules.fastqc.fastqc_theoretical_gc' via 2024-06-22T14:00:39,366 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-06-22T14:00:39,367 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-06-22T14:00:39,367 combination with a more fine grained `package-data` configuration. 2024-06-22T14:00:39,368 You can read more about "package data files" on setuptools documentation page: 2024-06-22T14:00:39,369 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-06-22T14:00:39,371 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-06-22T14:00:39,371 even if it does not contain any `.py` files. 2024-06-22T14:00:39,372 On the other hand, currently there is no concept of package data 2024-06-22T14:00:39,372 directory, all directories are treated like packages. 2024-06-22T14:00:39,373 ******************************************************************************** 2024-06-22T14:00:39,374 !! 2024-06-22T14:00:39,374 check.warn(importable) 2024-06-22T14:00:39,375 /tmp/pip-build-env-ye0gin6m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.featureCounts' is absent from the `packages` configuration. 2024-06-22T14:00:39,375 !! 2024-06-22T14:00:39,376 ******************************************************************************** 2024-06-22T14:00:39,376 ############################ 2024-06-22T14:00:39,377 # Package would be ignored # 2024-06-22T14:00:39,377 ############################ 2024-06-22T14:00:39,378 Python recognizes 'multiqc.modules.featureCounts' as an importable package[^1], 2024-06-22T14:00:39,378 but it is absent from setuptools' `packages` configuration. 2024-06-22T14:00:39,379 This leads to an ambiguous overall configuration. If you want to distribute this 2024-06-22T14:00:39,380 package, please make sure that 'multiqc.modules.featureCounts' is explicitly added 2024-06-22T14:00:39,380 to the `packages` configuration field. 2024-06-22T14:00:39,381 Alternatively, you can also rely on setuptools' discovery methods 2024-06-22T14:00:39,381 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-06-22T14:00:39,382 instead of `find_packages(...)`/`find:`). 2024-06-22T14:00:39,383 You can read more about "package discovery" on setuptools documentation page: 2024-06-22T14:00:39,384 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-06-22T14:00:39,385 If you don't want 'multiqc.modules.featureCounts' to be distributed and are 2024-06-22T14:00:39,385 already explicitly excluding 'multiqc.modules.featureCounts' via 2024-06-22T14:00:39,385 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-06-22T14:00:39,386 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-06-22T14:00:39,386 combination with a more fine grained `package-data` configuration. 2024-06-22T14:00:39,387 You can read more about "package data files" on setuptools documentation page: 2024-06-22T14:00:39,387 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-06-22T14:00:39,389 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-06-22T14:00:39,389 even if it does not contain any `.py` files. 2024-06-22T14:00:39,390 On the other hand, currently there is no concept of package data 2024-06-22T14:00:39,390 directory, all directories are treated like packages. 2024-06-22T14:00:39,391 ******************************************************************************** 2024-06-22T14:00:39,392 !! 2024-06-22T14:00:39,393 check.warn(importable) 2024-06-22T14:00:39,393 /tmp/pip-build-env-ye0gin6m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.fgbio' is absent from the `packages` configuration. 2024-06-22T14:00:39,394 !! 2024-06-22T14:00:39,395 ******************************************************************************** 2024-06-22T14:00:39,395 ############################ 2024-06-22T14:00:39,396 # Package would be ignored # 2024-06-22T14:00:39,396 ############################ 2024-06-22T14:00:39,397 Python recognizes 'multiqc.modules.fgbio' as an importable package[^1], 2024-06-22T14:00:39,397 but it is absent from setuptools' `packages` configuration. 2024-06-22T14:00:39,399 This leads to an ambiguous overall configuration. If you want to distribute this 2024-06-22T14:00:39,399 package, please make sure that 'multiqc.modules.fgbio' is explicitly added 2024-06-22T14:00:39,400 to the `packages` configuration field. 2024-06-22T14:00:39,401 Alternatively, you can also rely on setuptools' discovery methods 2024-06-22T14:00:39,402 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-06-22T14:00:39,402 instead of `find_packages(...)`/`find:`). 2024-06-22T14:00:39,403 You can read more about "package discovery" on setuptools documentation page: 2024-06-22T14:00:39,405 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-06-22T14:00:39,406 If you don't want 'multiqc.modules.fgbio' to be distributed and are 2024-06-22T14:00:39,406 already explicitly excluding 'multiqc.modules.fgbio' via 2024-06-22T14:00:39,407 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-06-22T14:00:39,408 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-06-22T14:00:39,408 combination with a more fine grained `package-data` configuration. 2024-06-22T14:00:39,410 You can read more about "package data files" on setuptools documentation page: 2024-06-22T14:00:39,411 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-06-22T14:00:39,412 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-06-22T14:00:39,413 even if it does not contain any `.py` files. 2024-06-22T14:00:39,413 On the other hand, currently there is no concept of package data 2024-06-22T14:00:39,414 directory, all directories are treated like packages. 2024-06-22T14:00:39,414 ******************************************************************************** 2024-06-22T14:00:39,415 !! 2024-06-22T14:00:39,416 check.warn(importable) 2024-06-22T14:00:39,416 /tmp/pip-build-env-ye0gin6m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.filtlong' is absent from the `packages` configuration. 2024-06-22T14:00:39,417 !! 2024-06-22T14:00:39,418 ******************************************************************************** 2024-06-22T14:00:39,418 ############################ 2024-06-22T14:00:39,419 # Package would be ignored # 2024-06-22T14:00:39,419 ############################ 2024-06-22T14:00:39,420 Python recognizes 'multiqc.modules.filtlong' as an importable package[^1], 2024-06-22T14:00:39,420 but it is absent from setuptools' `packages` configuration. 2024-06-22T14:00:39,421 This leads to an ambiguous overall configuration. If you want to distribute this 2024-06-22T14:00:39,422 package, please make sure that 'multiqc.modules.filtlong' is explicitly added 2024-06-22T14:00:39,422 to the `packages` configuration field. 2024-06-22T14:00:39,423 Alternatively, you can also rely on setuptools' discovery methods 2024-06-22T14:00:39,424 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-06-22T14:00:39,425 instead of `find_packages(...)`/`find:`). 2024-06-22T14:00:39,426 You can read more about "package discovery" on setuptools documentation page: 2024-06-22T14:00:39,427 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-06-22T14:00:39,428 If you don't want 'multiqc.modules.filtlong' to be distributed and are 2024-06-22T14:00:39,429 already explicitly excluding 'multiqc.modules.filtlong' via 2024-06-22T14:00:39,429 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-06-22T14:00:39,430 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-06-22T14:00:39,431 combination with a more fine grained `package-data` configuration. 2024-06-22T14:00:39,432 You can read more about "package data files" on setuptools documentation page: 2024-06-22T14:00:39,433 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-06-22T14:00:39,435 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-06-22T14:00:39,436 even if it does not contain any `.py` files. 2024-06-22T14:00:39,436 On the other hand, currently there is no concept of package data 2024-06-22T14:00:39,437 directory, all directories are treated like packages. 2024-06-22T14:00:39,438 ******************************************************************************** 2024-06-22T14:00:39,439 !! 2024-06-22T14:00:39,440 check.warn(importable) 2024-06-22T14:00:39,441 /tmp/pip-build-env-ye0gin6m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.flash' is absent from the `packages` configuration. 2024-06-22T14:00:39,441 !! 2024-06-22T14:00:39,443 ******************************************************************************** 2024-06-22T14:00:39,444 ############################ 2024-06-22T14:00:39,444 # Package would be ignored # 2024-06-22T14:00:39,446 ############################ 2024-06-22T14:00:39,446 Python recognizes 'multiqc.modules.flash' as an importable package[^1], 2024-06-22T14:00:39,447 but it is absent from setuptools' `packages` configuration. 2024-06-22T14:00:39,448 This leads to an ambiguous overall configuration. If you want to distribute this 2024-06-22T14:00:39,448 package, please make sure that 'multiqc.modules.flash' is explicitly added 2024-06-22T14:00:39,449 to the `packages` configuration field. 2024-06-22T14:00:39,450 Alternatively, you can also rely on setuptools' discovery methods 2024-06-22T14:00:39,450 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-06-22T14:00:39,451 instead of `find_packages(...)`/`find:`). 2024-06-22T14:00:39,452 You can read more about "package discovery" on setuptools documentation page: 2024-06-22T14:00:39,453 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-06-22T14:00:39,454 If you don't want 'multiqc.modules.flash' to be distributed and are 2024-06-22T14:00:39,454 already explicitly excluding 'multiqc.modules.flash' via 2024-06-22T14:00:39,455 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-06-22T14:00:39,455 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-06-22T14:00:39,456 combination with a more fine grained `package-data` configuration. 2024-06-22T14:00:39,457 You can read more about "package data files" on setuptools documentation page: 2024-06-22T14:00:39,458 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-06-22T14:00:39,460 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-06-22T14:00:39,461 even if it does not contain any `.py` files. 2024-06-22T14:00:39,461 On the other hand, currently there is no concept of package data 2024-06-22T14:00:39,462 directory, all directories are treated like packages. 2024-06-22T14:00:39,462 ******************************************************************************** 2024-06-22T14:00:39,463 !! 2024-06-22T14:00:39,464 check.warn(importable) 2024-06-22T14:00:39,465 /tmp/pip-build-env-ye0gin6m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.flexbar' is absent from the `packages` configuration. 2024-06-22T14:00:39,465 !! 2024-06-22T14:00:39,467 ******************************************************************************** 2024-06-22T14:00:39,467 ############################ 2024-06-22T14:00:39,468 # Package would be ignored # 2024-06-22T14:00:39,469 ############################ 2024-06-22T14:00:39,469 Python recognizes 'multiqc.modules.flexbar' as an importable package[^1], 2024-06-22T14:00:39,470 but it is absent from setuptools' `packages` configuration. 2024-06-22T14:00:39,471 This leads to an ambiguous overall configuration. If you want to distribute this 2024-06-22T14:00:39,472 package, please make sure that 'multiqc.modules.flexbar' is explicitly added 2024-06-22T14:00:39,472 to the `packages` configuration field. 2024-06-22T14:00:39,474 Alternatively, you can also rely on setuptools' discovery methods 2024-06-22T14:00:39,474 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-06-22T14:00:39,475 instead of `find_packages(...)`/`find:`). 2024-06-22T14:00:39,477 You can read more about "package discovery" on setuptools documentation page: 2024-06-22T14:00:39,478 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-06-22T14:00:39,480 If you don't want 'multiqc.modules.flexbar' to be distributed and are 2024-06-22T14:00:39,480 already explicitly excluding 'multiqc.modules.flexbar' via 2024-06-22T14:00:39,481 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-06-22T14:00:39,481 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-06-22T14:00:39,482 combination with a more fine grained `package-data` configuration. 2024-06-22T14:00:39,483 You can read more about "package data files" on setuptools documentation page: 2024-06-22T14:00:39,484 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-06-22T14:00:39,485 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-06-22T14:00:39,486 even if it does not contain any `.py` files. 2024-06-22T14:00:39,486 On the other hand, currently there is no concept of package data 2024-06-22T14:00:39,486 directory, all directories are treated like packages. 2024-06-22T14:00:39,487 ******************************************************************************** 2024-06-22T14:00:39,488 !! 2024-06-22T14:00:39,489 check.warn(importable) 2024-06-22T14:00:39,489 /tmp/pip-build-env-ye0gin6m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.freyja' is absent from the `packages` configuration. 2024-06-22T14:00:39,489 !! 2024-06-22T14:00:39,490 ******************************************************************************** 2024-06-22T14:00:39,491 ############################ 2024-06-22T14:00:39,491 # Package would be ignored # 2024-06-22T14:00:39,491 ############################ 2024-06-22T14:00:39,492 Python recognizes 'multiqc.modules.freyja' as an importable package[^1], 2024-06-22T14:00:39,492 but it is absent from setuptools' `packages` configuration. 2024-06-22T14:00:39,493 This leads to an ambiguous overall configuration. If you want to distribute this 2024-06-22T14:00:39,494 package, please make sure that 'multiqc.modules.freyja' is explicitly added 2024-06-22T14:00:39,495 to the `packages` configuration field. 2024-06-22T14:00:39,496 Alternatively, you can also rely on setuptools' discovery methods 2024-06-22T14:00:39,496 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-06-22T14:00:39,496 instead of `find_packages(...)`/`find:`). 2024-06-22T14:00:39,497 You can read more about "package discovery" on setuptools documentation page: 2024-06-22T14:00:39,498 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-06-22T14:00:39,499 If you don't want 'multiqc.modules.freyja' to be distributed and are 2024-06-22T14:00:39,500 already explicitly excluding 'multiqc.modules.freyja' via 2024-06-22T14:00:39,500 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-06-22T14:00:39,501 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-06-22T14:00:39,501 combination with a more fine grained `package-data` configuration. 2024-06-22T14:00:39,502 You can read more about "package data files" on setuptools documentation page: 2024-06-22T14:00:39,503 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-06-22T14:00:39,504 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-06-22T14:00:39,505 even if it does not contain any `.py` files. 2024-06-22T14:00:39,505 On the other hand, currently there is no concept of package data 2024-06-22T14:00:39,506 directory, all directories are treated like packages. 2024-06-22T14:00:39,506 ******************************************************************************** 2024-06-22T14:00:39,507 !! 2024-06-22T14:00:39,507 check.warn(importable) 2024-06-22T14:00:39,508 /tmp/pip-build-env-ye0gin6m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.gatk' is absent from the `packages` configuration. 2024-06-22T14:00:39,509 !! 2024-06-22T14:00:39,509 ******************************************************************************** 2024-06-22T14:00:39,510 ############################ 2024-06-22T14:00:39,510 # Package would be ignored # 2024-06-22T14:00:39,510 ############################ 2024-06-22T14:00:39,510 Python recognizes 'multiqc.modules.gatk' as an importable package[^1], 2024-06-22T14:00:39,511 but it is absent from setuptools' `packages` configuration. 2024-06-22T14:00:39,512 This leads to an ambiguous overall configuration. If you want to distribute this 2024-06-22T14:00:39,512 package, please make sure that 'multiqc.modules.gatk' is explicitly added 2024-06-22T14:00:39,512 to the `packages` configuration field. 2024-06-22T14:00:39,513 Alternatively, you can also rely on setuptools' discovery methods 2024-06-22T14:00:39,513 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-06-22T14:00:39,514 instead of `find_packages(...)`/`find:`). 2024-06-22T14:00:39,514 You can read more about "package discovery" on setuptools documentation page: 2024-06-22T14:00:39,515 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-06-22T14:00:39,516 If you don't want 'multiqc.modules.gatk' to be distributed and are 2024-06-22T14:00:39,516 already explicitly excluding 'multiqc.modules.gatk' via 2024-06-22T14:00:39,517 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-06-22T14:00:39,517 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-06-22T14:00:39,517 combination with a more fine grained `package-data` configuration. 2024-06-22T14:00:39,518 You can read more about "package data files" on setuptools documentation page: 2024-06-22T14:00:39,519 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-06-22T14:00:39,520 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-06-22T14:00:39,521 even if it does not contain any `.py` files. 2024-06-22T14:00:39,521 On the other hand, currently there is no concept of package data 2024-06-22T14:00:39,522 directory, all directories are treated like packages. 2024-06-22T14:00:39,522 ******************************************************************************** 2024-06-22T14:00:39,523 !! 2024-06-22T14:00:39,524 check.warn(importable) 2024-06-22T14:00:39,524 /tmp/pip-build-env-ye0gin6m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.gffcompare' is absent from the `packages` configuration. 2024-06-22T14:00:39,524 !! 2024-06-22T14:00:39,525 ******************************************************************************** 2024-06-22T14:00:39,526 ############################ 2024-06-22T14:00:39,526 # Package would be ignored # 2024-06-22T14:00:39,527 ############################ 2024-06-22T14:00:39,527 Python recognizes 'multiqc.modules.gffcompare' as an importable package[^1], 2024-06-22T14:00:39,528 but it is absent from setuptools' `packages` configuration. 2024-06-22T14:00:39,528 This leads to an ambiguous overall configuration. If you want to distribute this 2024-06-22T14:00:39,529 package, please make sure that 'multiqc.modules.gffcompare' is explicitly added 2024-06-22T14:00:39,529 to the `packages` configuration field. 2024-06-22T14:00:39,531 Alternatively, you can also rely on setuptools' discovery methods 2024-06-22T14:00:39,531 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-06-22T14:00:39,532 instead of `find_packages(...)`/`find:`). 2024-06-22T14:00:39,532 You can read more about "package discovery" on setuptools documentation page: 2024-06-22T14:00:39,533 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-06-22T14:00:39,534 If you don't want 'multiqc.modules.gffcompare' to be distributed and are 2024-06-22T14:00:39,534 already explicitly excluding 'multiqc.modules.gffcompare' via 2024-06-22T14:00:39,534 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-06-22T14:00:39,535 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-06-22T14:00:39,535 combination with a more fine grained `package-data` configuration. 2024-06-22T14:00:39,536 You can read more about "package data files" on setuptools documentation page: 2024-06-22T14:00:39,536 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-06-22T14:00:39,537 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-06-22T14:00:39,538 even if it does not contain any `.py` files. 2024-06-22T14:00:39,538 On the other hand, currently there is no concept of package data 2024-06-22T14:00:39,538 directory, all directories are treated like packages. 2024-06-22T14:00:39,539 ******************************************************************************** 2024-06-22T14:00:39,539 !! 2024-06-22T14:00:39,540 check.warn(importable) 2024-06-22T14:00:39,540 /tmp/pip-build-env-ye0gin6m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.goleft_indexcov' is absent from the `packages` configuration. 2024-06-22T14:00:39,541 !! 2024-06-22T14:00:39,542 ******************************************************************************** 2024-06-22T14:00:39,542 ############################ 2024-06-22T14:00:39,543 # Package would be ignored # 2024-06-22T14:00:39,543 ############################ 2024-06-22T14:00:39,544 Python recognizes 'multiqc.modules.goleft_indexcov' as an importable package[^1], 2024-06-22T14:00:39,544 but it is absent from setuptools' `packages` configuration. 2024-06-22T14:00:39,546 This leads to an ambiguous overall configuration. If you want to distribute this 2024-06-22T14:00:39,546 package, please make sure that 'multiqc.modules.goleft_indexcov' is explicitly added 2024-06-22T14:00:39,547 to the `packages` configuration field. 2024-06-22T14:00:39,548 Alternatively, you can also rely on setuptools' discovery methods 2024-06-22T14:00:39,548 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-06-22T14:00:39,549 instead of `find_packages(...)`/`find:`). 2024-06-22T14:00:39,550 You can read more about "package discovery" on setuptools documentation page: 2024-06-22T14:00:39,551 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-06-22T14:00:39,551 If you don't want 'multiqc.modules.goleft_indexcov' to be distributed and are 2024-06-22T14:00:39,552 already explicitly excluding 'multiqc.modules.goleft_indexcov' via 2024-06-22T14:00:39,552 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-06-22T14:00:39,553 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-06-22T14:00:39,553 combination with a more fine grained `package-data` configuration. 2024-06-22T14:00:39,554 You can read more about "package data files" on setuptools documentation page: 2024-06-22T14:00:39,555 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-06-22T14:00:39,557 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-06-22T14:00:39,557 even if it does not contain any `.py` files. 2024-06-22T14:00:39,558 On the other hand, currently there is no concept of package data 2024-06-22T14:00:39,558 directory, all directories are treated like packages. 2024-06-22T14:00:39,559 ******************************************************************************** 2024-06-22T14:00:39,559 !! 2024-06-22T14:00:39,560 check.warn(importable) 2024-06-22T14:00:39,560 /tmp/pip-build-env-ye0gin6m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.gopeaks' is absent from the `packages` configuration. 2024-06-22T14:00:39,560 !! 2024-06-22T14:00:39,561 ******************************************************************************** 2024-06-22T14:00:39,561 ############################ 2024-06-22T14:00:39,562 # Package would be ignored # 2024-06-22T14:00:39,562 ############################ 2024-06-22T14:00:39,562 Python recognizes 'multiqc.modules.gopeaks' as an importable package[^1], 2024-06-22T14:00:39,563 but it is absent from setuptools' `packages` configuration. 2024-06-22T14:00:39,564 This leads to an ambiguous overall configuration. If you want to distribute this 2024-06-22T14:00:39,564 package, please make sure that 'multiqc.modules.gopeaks' is explicitly added 2024-06-22T14:00:39,564 to the `packages` configuration field. 2024-06-22T14:00:39,565 Alternatively, you can also rely on setuptools' discovery methods 2024-06-22T14:00:39,566 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-06-22T14:00:39,566 instead of `find_packages(...)`/`find:`). 2024-06-22T14:00:39,567 You can read more about "package discovery" on setuptools documentation page: 2024-06-22T14:00:39,568 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-06-22T14:00:39,569 If you don't want 'multiqc.modules.gopeaks' to be distributed and are 2024-06-22T14:00:39,569 already explicitly excluding 'multiqc.modules.gopeaks' via 2024-06-22T14:00:39,570 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-06-22T14:00:39,570 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-06-22T14:00:39,571 combination with a more fine grained `package-data` configuration. 2024-06-22T14:00:39,572 You can read more about "package data files" on setuptools documentation page: 2024-06-22T14:00:39,573 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-06-22T14:00:39,574 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-06-22T14:00:39,575 even if it does not contain any `.py` files. 2024-06-22T14:00:39,575 On the other hand, currently there is no concept of package data 2024-06-22T14:00:39,575 directory, all directories are treated like packages. 2024-06-22T14:00:39,576 ******************************************************************************** 2024-06-22T14:00:39,577 !! 2024-06-22T14:00:39,577 check.warn(importable) 2024-06-22T14:00:39,578 /tmp/pip-build-env-ye0gin6m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.happy' is absent from the `packages` configuration. 2024-06-22T14:00:39,578 !! 2024-06-22T14:00:39,579 ******************************************************************************** 2024-06-22T14:00:39,580 ############################ 2024-06-22T14:00:39,580 # Package would be ignored # 2024-06-22T14:00:39,581 ############################ 2024-06-22T14:00:39,581 Python recognizes 'multiqc.modules.happy' as an importable package[^1], 2024-06-22T14:00:39,581 but it is absent from setuptools' `packages` configuration. 2024-06-22T14:00:39,582 This leads to an ambiguous overall configuration. If you want to distribute this 2024-06-22T14:00:39,583 package, please make sure that 'multiqc.modules.happy' is explicitly added 2024-06-22T14:00:39,583 to the `packages` configuration field. 2024-06-22T14:00:39,584 Alternatively, you can also rely on setuptools' discovery methods 2024-06-22T14:00:39,584 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-06-22T14:00:39,584 instead of `find_packages(...)`/`find:`). 2024-06-22T14:00:39,585 You can read more about "package discovery" on setuptools documentation page: 2024-06-22T14:00:39,586 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-06-22T14:00:39,586 If you don't want 'multiqc.modules.happy' to be distributed and are 2024-06-22T14:00:39,587 already explicitly excluding 'multiqc.modules.happy' via 2024-06-22T14:00:39,587 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-06-22T14:00:39,587 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-06-22T14:00:39,588 combination with a more fine grained `package-data` configuration. 2024-06-22T14:00:39,588 You can read more about "package data files" on setuptools documentation page: 2024-06-22T14:00:39,589 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-06-22T14:00:39,590 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-06-22T14:00:39,591 even if it does not contain any `.py` files. 2024-06-22T14:00:39,591 On the other hand, currently there is no concept of package data 2024-06-22T14:00:39,592 directory, all directories are treated like packages. 2024-06-22T14:00:39,592 ******************************************************************************** 2024-06-22T14:00:39,593 !! 2024-06-22T14:00:39,593 check.warn(importable) 2024-06-22T14:00:39,594 /tmp/pip-build-env-ye0gin6m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.hicexplorer' is absent from the `packages` configuration. 2024-06-22T14:00:39,595 !! 2024-06-22T14:00:39,596 ******************************************************************************** 2024-06-22T14:00:39,596 ############################ 2024-06-22T14:00:39,596 # Package would be ignored # 2024-06-22T14:00:39,597 ############################ 2024-06-22T14:00:39,597 Python recognizes 'multiqc.modules.hicexplorer' as an importable package[^1], 2024-06-22T14:00:39,598 but it is absent from setuptools' `packages` configuration. 2024-06-22T14:00:39,599 This leads to an ambiguous overall configuration. If you want to distribute this 2024-06-22T14:00:39,599 package, please make sure that 'multiqc.modules.hicexplorer' is explicitly added 2024-06-22T14:00:39,599 to the `packages` configuration field. 2024-06-22T14:00:39,600 Alternatively, you can also rely on setuptools' discovery methods 2024-06-22T14:00:39,601 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-06-22T14:00:39,601 instead of `find_packages(...)`/`find:`). 2024-06-22T14:00:39,602 You can read more about "package discovery" on setuptools documentation page: 2024-06-22T14:00:39,603 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-06-22T14:00:39,604 If you don't want 'multiqc.modules.hicexplorer' to be distributed and are 2024-06-22T14:00:39,604 already explicitly excluding 'multiqc.modules.hicexplorer' via 2024-06-22T14:00:39,605 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-06-22T14:00:39,605 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-06-22T14:00:39,606 combination with a more fine grained `package-data` configuration. 2024-06-22T14:00:39,607 You can read more about "package data files" on setuptools documentation page: 2024-06-22T14:00:39,607 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-06-22T14:00:39,608 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-06-22T14:00:39,609 even if it does not contain any `.py` files. 2024-06-22T14:00:39,609 On the other hand, currently there is no concept of package data 2024-06-22T14:00:39,609 directory, all directories are treated like packages. 2024-06-22T14:00:39,610 ******************************************************************************** 2024-06-22T14:00:39,610 !! 2024-06-22T14:00:39,611 check.warn(importable) 2024-06-22T14:00:39,611 /tmp/pip-build-env-ye0gin6m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.hicpro' is absent from the `packages` configuration. 2024-06-22T14:00:39,612 !! 2024-06-22T14:00:39,612 ******************************************************************************** 2024-06-22T14:00:39,613 ############################ 2024-06-22T14:00:39,613 # Package would be ignored # 2024-06-22T14:00:39,614 ############################ 2024-06-22T14:00:39,614 Python recognizes 'multiqc.modules.hicpro' as an importable package[^1], 2024-06-22T14:00:39,615 but it is absent from setuptools' `packages` configuration. 2024-06-22T14:00:39,616 This leads to an ambiguous overall configuration. If you want to distribute this 2024-06-22T14:00:39,616 package, please make sure that 'multiqc.modules.hicpro' is explicitly added 2024-06-22T14:00:39,617 to the `packages` configuration field. 2024-06-22T14:00:39,618 Alternatively, you can also rely on setuptools' discovery methods 2024-06-22T14:00:39,618 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-06-22T14:00:39,619 instead of `find_packages(...)`/`find:`). 2024-06-22T14:00:39,620 You can read more about "package discovery" on setuptools documentation page: 2024-06-22T14:00:39,621 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-06-22T14:00:39,622 If you don't want 'multiqc.modules.hicpro' to be distributed and are 2024-06-22T14:00:39,622 already explicitly excluding 'multiqc.modules.hicpro' via 2024-06-22T14:00:39,623 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-06-22T14:00:39,623 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-06-22T14:00:39,624 combination with a more fine grained `package-data` configuration. 2024-06-22T14:00:39,625 You can read more about "package data files" on setuptools documentation page: 2024-06-22T14:00:39,626 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-06-22T14:00:39,627 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-06-22T14:00:39,627 even if it does not contain any `.py` files. 2024-06-22T14:00:39,628 On the other hand, currently there is no concept of package data 2024-06-22T14:00:39,628 directory, all directories are treated like packages. 2024-06-22T14:00:39,629 ******************************************************************************** 2024-06-22T14:00:39,630 !! 2024-06-22T14:00:39,630 check.warn(importable) 2024-06-22T14:00:39,630 /tmp/pip-build-env-ye0gin6m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.hicup' is absent from the `packages` configuration. 2024-06-22T14:00:39,631 !! 2024-06-22T14:00:39,632 ******************************************************************************** 2024-06-22T14:00:39,632 ############################ 2024-06-22T14:00:39,633 # Package would be ignored # 2024-06-22T14:00:39,633 ############################ 2024-06-22T14:00:39,633 Python recognizes 'multiqc.modules.hicup' as an importable package[^1], 2024-06-22T14:00:39,634 but it is absent from setuptools' `packages` configuration. 2024-06-22T14:00:39,634 This leads to an ambiguous overall configuration. If you want to distribute this 2024-06-22T14:00:39,635 package, please make sure that 'multiqc.modules.hicup' is explicitly added 2024-06-22T14:00:39,635 to the `packages` configuration field. 2024-06-22T14:00:39,636 Alternatively, you can also rely on setuptools' discovery methods 2024-06-22T14:00:39,636 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-06-22T14:00:39,636 instead of `find_packages(...)`/`find:`). 2024-06-22T14:00:39,637 You can read more about "package discovery" on setuptools documentation page: 2024-06-22T14:00:39,638 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-06-22T14:00:39,639 If you don't want 'multiqc.modules.hicup' to be distributed and are 2024-06-22T14:00:39,639 already explicitly excluding 'multiqc.modules.hicup' via 2024-06-22T14:00:39,639 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-06-22T14:00:39,640 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-06-22T14:00:39,640 combination with a more fine grained `package-data` configuration. 2024-06-22T14:00:39,641 You can read more about "package data files" on setuptools documentation page: 2024-06-22T14:00:39,642 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-06-22T14:00:39,643 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-06-22T14:00:39,643 even if it does not contain any `.py` files. 2024-06-22T14:00:39,644 On the other hand, currently there is no concept of package data 2024-06-22T14:00:39,644 directory, all directories are treated like packages. 2024-06-22T14:00:39,645 ******************************************************************************** 2024-06-22T14:00:39,646 !! 2024-06-22T14:00:39,646 check.warn(importable) 2024-06-22T14:00:39,646 /tmp/pip-build-env-ye0gin6m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.hifiasm' is absent from the `packages` configuration. 2024-06-22T14:00:39,647 !! 2024-06-22T14:00:39,648 ******************************************************************************** 2024-06-22T14:00:39,648 ############################ 2024-06-22T14:00:39,649 # Package would be ignored # 2024-06-22T14:00:39,649 ############################ 2024-06-22T14:00:39,650 Python recognizes 'multiqc.modules.hifiasm' as an importable package[^1], 2024-06-22T14:00:39,650 but it is absent from setuptools' `packages` configuration. 2024-06-22T14:00:39,651 This leads to an ambiguous overall configuration. If you want to distribute this 2024-06-22T14:00:39,651 package, please make sure that 'multiqc.modules.hifiasm' is explicitly added 2024-06-22T14:00:39,652 to the `packages` configuration field. 2024-06-22T14:00:39,653 Alternatively, you can also rely on setuptools' discovery methods 2024-06-22T14:00:39,653 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-06-22T14:00:39,654 instead of `find_packages(...)`/`find:`). 2024-06-22T14:00:39,655 You can read more about "package discovery" on setuptools documentation page: 2024-06-22T14:00:39,656 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-06-22T14:00:39,656 If you don't want 'multiqc.modules.hifiasm' to be distributed and are 2024-06-22T14:00:39,657 already explicitly excluding 'multiqc.modules.hifiasm' via 2024-06-22T14:00:39,657 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-06-22T14:00:39,657 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-06-22T14:00:39,658 combination with a more fine grained `package-data` configuration. 2024-06-22T14:00:39,658 You can read more about "package data files" on setuptools documentation page: 2024-06-22T14:00:39,659 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-06-22T14:00:39,660 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-06-22T14:00:39,660 even if it does not contain any `.py` files. 2024-06-22T14:00:39,661 On the other hand, currently there is no concept of package data 2024-06-22T14:00:39,661 directory, all directories are treated like packages. 2024-06-22T14:00:39,661 ******************************************************************************** 2024-06-22T14:00:39,662 !! 2024-06-22T14:00:39,663 check.warn(importable) 2024-06-22T14:00:39,663 /tmp/pip-build-env-ye0gin6m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.hisat2' is absent from the `packages` configuration. 2024-06-22T14:00:39,663 !! 2024-06-22T14:00:39,664 ******************************************************************************** 2024-06-22T14:00:39,665 ############################ 2024-06-22T14:00:39,665 # Package would be ignored # 2024-06-22T14:00:39,666 ############################ 2024-06-22T14:00:39,666 Python recognizes 'multiqc.modules.hisat2' as an importable package[^1], 2024-06-22T14:00:39,666 but it is absent from setuptools' `packages` configuration. 2024-06-22T14:00:39,667 This leads to an ambiguous overall configuration. If you want to distribute this 2024-06-22T14:00:39,668 package, please make sure that 'multiqc.modules.hisat2' is explicitly added 2024-06-22T14:00:39,668 to the `packages` configuration field. 2024-06-22T14:00:39,669 Alternatively, you can also rely on setuptools' discovery methods 2024-06-22T14:00:39,669 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-06-22T14:00:39,670 instead of `find_packages(...)`/`find:`). 2024-06-22T14:00:39,671 You can read more about "package discovery" on setuptools documentation page: 2024-06-22T14:00:39,672 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-06-22T14:00:39,672 If you don't want 'multiqc.modules.hisat2' to be distributed and are 2024-06-22T14:00:39,673 already explicitly excluding 'multiqc.modules.hisat2' via 2024-06-22T14:00:39,673 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-06-22T14:00:39,674 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-06-22T14:00:39,674 combination with a more fine grained `package-data` configuration. 2024-06-22T14:00:39,675 You can read more about "package data files" on setuptools documentation page: 2024-06-22T14:00:39,676 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-06-22T14:00:39,678 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-06-22T14:00:39,678 even if it does not contain any `.py` files. 2024-06-22T14:00:39,679 On the other hand, currently there is no concept of package data 2024-06-22T14:00:39,679 directory, all directories are treated like packages. 2024-06-22T14:00:39,679 ******************************************************************************** 2024-06-22T14:00:39,681 !! 2024-06-22T14:00:39,681 check.warn(importable) 2024-06-22T14:00:39,681 /tmp/pip-build-env-ye0gin6m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.homer' is absent from the `packages` configuration. 2024-06-22T14:00:39,682 !! 2024-06-22T14:00:39,683 ******************************************************************************** 2024-06-22T14:00:39,683 ############################ 2024-06-22T14:00:39,684 # Package would be ignored # 2024-06-22T14:00:39,684 ############################ 2024-06-22T14:00:39,684 Python recognizes 'multiqc.modules.homer' as an importable package[^1], 2024-06-22T14:00:39,685 but it is absent from setuptools' `packages` configuration. 2024-06-22T14:00:39,685 This leads to an ambiguous overall configuration. If you want to distribute this 2024-06-22T14:00:39,686 package, please make sure that 'multiqc.modules.homer' is explicitly added 2024-06-22T14:00:39,686 to the `packages` configuration field. 2024-06-22T14:00:39,687 Alternatively, you can also rely on setuptools' discovery methods 2024-06-22T14:00:39,687 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-06-22T14:00:39,688 instead of `find_packages(...)`/`find:`). 2024-06-22T14:00:39,688 You can read more about "package discovery" on setuptools documentation page: 2024-06-22T14:00:39,689 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-06-22T14:00:39,690 If you don't want 'multiqc.modules.homer' to be distributed and are 2024-06-22T14:00:39,691 already explicitly excluding 'multiqc.modules.homer' via 2024-06-22T14:00:39,691 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-06-22T14:00:39,692 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-06-22T14:00:39,692 combination with a more fine grained `package-data` configuration. 2024-06-22T14:00:39,693 You can read more about "package data files" on setuptools documentation page: 2024-06-22T14:00:39,694 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-06-22T14:00:39,696 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-06-22T14:00:39,696 even if it does not contain any `.py` files. 2024-06-22T14:00:39,697 On the other hand, currently there is no concept of package data 2024-06-22T14:00:39,697 directory, all directories are treated like packages. 2024-06-22T14:00:39,698 ******************************************************************************** 2024-06-22T14:00:39,698 !! 2024-06-22T14:00:39,699 check.warn(importable) 2024-06-22T14:00:39,699 /tmp/pip-build-env-ye0gin6m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.hops' is absent from the `packages` configuration. 2024-06-22T14:00:39,700 !! 2024-06-22T14:00:39,701 ******************************************************************************** 2024-06-22T14:00:39,701 ############################ 2024-06-22T14:00:39,702 # Package would be ignored # 2024-06-22T14:00:39,702 ############################ 2024-06-22T14:00:39,703 Python recognizes 'multiqc.modules.hops' as an importable package[^1], 2024-06-22T14:00:39,703 but it is absent from setuptools' `packages` configuration. 2024-06-22T14:00:39,704 This leads to an ambiguous overall configuration. If you want to distribute this 2024-06-22T14:00:39,705 package, please make sure that 'multiqc.modules.hops' is explicitly added 2024-06-22T14:00:39,705 to the `packages` configuration field. 2024-06-22T14:00:39,707 Alternatively, you can also rely on setuptools' discovery methods 2024-06-22T14:00:39,707 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-06-22T14:00:39,707 instead of `find_packages(...)`/`find:`). 2024-06-22T14:00:39,708 You can read more about "package discovery" on setuptools documentation page: 2024-06-22T14:00:39,709 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-06-22T14:00:39,709 If you don't want 'multiqc.modules.hops' to be distributed and are 2024-06-22T14:00:39,710 already explicitly excluding 'multiqc.modules.hops' via 2024-06-22T14:00:39,710 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-06-22T14:00:39,710 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-06-22T14:00:39,711 combination with a more fine grained `package-data` configuration. 2024-06-22T14:00:39,711 You can read more about "package data files" on setuptools documentation page: 2024-06-22T14:00:39,712 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-06-22T14:00:39,713 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-06-22T14:00:39,713 even if it does not contain any `.py` files. 2024-06-22T14:00:39,714 On the other hand, currently there is no concept of package data 2024-06-22T14:00:39,714 directory, all directories are treated like packages. 2024-06-22T14:00:39,715 ******************************************************************************** 2024-06-22T14:00:39,715 !! 2024-06-22T14:00:39,716 check.warn(importable) 2024-06-22T14:00:39,716 /tmp/pip-build-env-ye0gin6m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.hostile' is absent from the `packages` configuration. 2024-06-22T14:00:39,717 !! 2024-06-22T14:00:39,718 ******************************************************************************** 2024-06-22T14:00:39,718 ############################ 2024-06-22T14:00:39,719 # Package would be ignored # 2024-06-22T14:00:39,719 ############################ 2024-06-22T14:00:39,720 Python recognizes 'multiqc.modules.hostile' as an importable package[^1], 2024-06-22T14:00:39,720 but it is absent from setuptools' `packages` configuration. 2024-06-22T14:00:39,721 This leads to an ambiguous overall configuration. If you want to distribute this 2024-06-22T14:00:39,722 package, please make sure that 'multiqc.modules.hostile' is explicitly added 2024-06-22T14:00:39,723 to the `packages` configuration field. 2024-06-22T14:00:39,723 Alternatively, you can also rely on setuptools' discovery methods 2024-06-22T14:00:39,724 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-06-22T14:00:39,724 instead of `find_packages(...)`/`find:`). 2024-06-22T14:00:39,725 You can read more about "package discovery" on setuptools documentation page: 2024-06-22T14:00:39,726 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-06-22T14:00:39,727 If you don't want 'multiqc.modules.hostile' to be distributed and are 2024-06-22T14:00:39,728 already explicitly excluding 'multiqc.modules.hostile' via 2024-06-22T14:00:39,728 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-06-22T14:00:39,728 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-06-22T14:00:39,729 combination with a more fine grained `package-data` configuration. 2024-06-22T14:00:39,730 You can read more about "package data files" on setuptools documentation page: 2024-06-22T14:00:39,731 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-06-22T14:00:39,733 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-06-22T14:00:39,733 even if it does not contain any `.py` files. 2024-06-22T14:00:39,734 On the other hand, currently there is no concept of package data 2024-06-22T14:00:39,734 directory, all directories are treated like packages. 2024-06-22T14:00:39,734 ******************************************************************************** 2024-06-22T14:00:39,735 !! 2024-06-22T14:00:39,735 check.warn(importable) 2024-06-22T14:00:39,735 /tmp/pip-build-env-ye0gin6m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.htseq' is absent from the `packages` configuration. 2024-06-22T14:00:39,736 !! 2024-06-22T14:00:39,736 ******************************************************************************** 2024-06-22T14:00:39,737 ############################ 2024-06-22T14:00:39,737 # Package would be ignored # 2024-06-22T14:00:39,737 ############################ 2024-06-22T14:00:39,738 Python recognizes 'multiqc.modules.htseq' as an importable package[^1], 2024-06-22T14:00:39,738 but it is absent from setuptools' `packages` configuration. 2024-06-22T14:00:39,739 This leads to an ambiguous overall configuration. If you want to distribute this 2024-06-22T14:00:39,739 package, please make sure that 'multiqc.modules.htseq' is explicitly added 2024-06-22T14:00:39,740 to the `packages` configuration field. 2024-06-22T14:00:39,740 Alternatively, you can also rely on setuptools' discovery methods 2024-06-22T14:00:39,741 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-06-22T14:00:39,742 instead of `find_packages(...)`/`find:`). 2024-06-22T14:00:39,743 You can read more about "package discovery" on setuptools documentation page: 2024-06-22T14:00:39,744 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-06-22T14:00:39,745 If you don't want 'multiqc.modules.htseq' to be distributed and are 2024-06-22T14:00:39,745 already explicitly excluding 'multiqc.modules.htseq' via 2024-06-22T14:00:39,746 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-06-22T14:00:39,746 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-06-22T14:00:39,747 combination with a more fine grained `package-data` configuration. 2024-06-22T14:00:39,748 You can read more about "package data files" on setuptools documentation page: 2024-06-22T14:00:39,749 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-06-22T14:00:39,750 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-06-22T14:00:39,751 even if it does not contain any `.py` files. 2024-06-22T14:00:39,751 On the other hand, currently there is no concept of package data 2024-06-22T14:00:39,752 directory, all directories are treated like packages. 2024-06-22T14:00:39,752 ******************************************************************************** 2024-06-22T14:00:39,753 !! 2024-06-22T14:00:39,754 check.warn(importable) 2024-06-22T14:00:39,754 /tmp/pip-build-env-ye0gin6m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.humid' is absent from the `packages` configuration. 2024-06-22T14:00:39,755 !! 2024-06-22T14:00:39,756 ******************************************************************************** 2024-06-22T14:00:39,756 ############################ 2024-06-22T14:00:39,757 # Package would be ignored # 2024-06-22T14:00:39,757 ############################ 2024-06-22T14:00:39,758 Python recognizes 'multiqc.modules.humid' as an importable package[^1], 2024-06-22T14:00:39,758 but it is absent from setuptools' `packages` configuration. 2024-06-22T14:00:39,759 This leads to an ambiguous overall configuration. If you want to distribute this 2024-06-22T14:00:39,759 package, please make sure that 'multiqc.modules.humid' is explicitly added 2024-06-22T14:00:39,760 to the `packages` configuration field. 2024-06-22T14:00:39,760 Alternatively, you can also rely on setuptools' discovery methods 2024-06-22T14:00:39,761 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-06-22T14:00:39,761 instead of `find_packages(...)`/`find:`). 2024-06-22T14:00:39,762 You can read more about "package discovery" on setuptools documentation page: 2024-06-22T14:00:39,762 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-06-22T14:00:39,763 If you don't want 'multiqc.modules.humid' to be distributed and are 2024-06-22T14:00:39,763 already explicitly excluding 'multiqc.modules.humid' via 2024-06-22T14:00:39,763 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-06-22T14:00:39,764 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-06-22T14:00:39,764 combination with a more fine grained `package-data` configuration. 2024-06-22T14:00:39,765 You can read more about "package data files" on setuptools documentation page: 2024-06-22T14:00:39,766 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-06-22T14:00:39,767 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-06-22T14:00:39,768 even if it does not contain any `.py` files. 2024-06-22T14:00:39,768 On the other hand, currently there is no concept of package data 2024-06-22T14:00:39,768 directory, all directories are treated like packages. 2024-06-22T14:00:39,769 ******************************************************************************** 2024-06-22T14:00:39,770 !! 2024-06-22T14:00:39,770 check.warn(importable) 2024-06-22T14:00:39,771 /tmp/pip-build-env-ye0gin6m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.interop' is absent from the `packages` configuration. 2024-06-22T14:00:39,771 !! 2024-06-22T14:00:39,772 ******************************************************************************** 2024-06-22T14:00:39,773 ############################ 2024-06-22T14:00:39,773 # Package would be ignored # 2024-06-22T14:00:39,774 ############################ 2024-06-22T14:00:39,774 Python recognizes 'multiqc.modules.interop' as an importable package[^1], 2024-06-22T14:00:39,775 but it is absent from setuptools' `packages` configuration. 2024-06-22T14:00:39,776 This leads to an ambiguous overall configuration. If you want to distribute this 2024-06-22T14:00:39,776 package, please make sure that 'multiqc.modules.interop' is explicitly added 2024-06-22T14:00:39,777 to the `packages` configuration field. 2024-06-22T14:00:39,778 Alternatively, you can also rely on setuptools' discovery methods 2024-06-22T14:00:39,778 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-06-22T14:00:39,779 instead of `find_packages(...)`/`find:`). 2024-06-22T14:00:39,779 You can read more about "package discovery" on setuptools documentation page: 2024-06-22T14:00:39,780 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-06-22T14:00:39,781 If you don't want 'multiqc.modules.interop' to be distributed and are 2024-06-22T14:00:39,782 already explicitly excluding 'multiqc.modules.interop' via 2024-06-22T14:00:39,783 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-06-22T14:00:39,783 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-06-22T14:00:39,784 combination with a more fine grained `package-data` configuration. 2024-06-22T14:00:39,785 You can read more about "package data files" on setuptools documentation page: 2024-06-22T14:00:39,785 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-06-22T14:00:39,786 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-06-22T14:00:39,787 even if it does not contain any `.py` files. 2024-06-22T14:00:39,787 On the other hand, currently there is no concept of package data 2024-06-22T14:00:39,787 directory, all directories are treated like packages. 2024-06-22T14:00:39,788 ******************************************************************************** 2024-06-22T14:00:39,788 !! 2024-06-22T14:00:39,789 check.warn(importable) 2024-06-22T14:00:39,789 /tmp/pip-build-env-ye0gin6m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.isoseq' is absent from the `packages` configuration. 2024-06-22T14:00:39,789 !! 2024-06-22T14:00:39,790 ******************************************************************************** 2024-06-22T14:00:39,790 ############################ 2024-06-22T14:00:39,791 # Package would be ignored # 2024-06-22T14:00:39,791 ############################ 2024-06-22T14:00:39,792 Python recognizes 'multiqc.modules.isoseq' as an importable package[^1], 2024-06-22T14:00:39,792 but it is absent from setuptools' `packages` configuration. 2024-06-22T14:00:39,793 This leads to an ambiguous overall configuration. If you want to distribute this 2024-06-22T14:00:39,793 package, please make sure that 'multiqc.modules.isoseq' is explicitly added 2024-06-22T14:00:39,794 to the `packages` configuration field. 2024-06-22T14:00:39,795 Alternatively, you can also rely on setuptools' discovery methods 2024-06-22T14:00:39,795 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-06-22T14:00:39,796 instead of `find_packages(...)`/`find:`). 2024-06-22T14:00:39,797 You can read more about "package discovery" on setuptools documentation page: 2024-06-22T14:00:39,798 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-06-22T14:00:39,799 If you don't want 'multiqc.modules.isoseq' to be distributed and are 2024-06-22T14:00:39,800 already explicitly excluding 'multiqc.modules.isoseq' via 2024-06-22T14:00:39,800 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-06-22T14:00:39,801 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-06-22T14:00:39,802 combination with a more fine grained `package-data` configuration. 2024-06-22T14:00:39,802 You can read more about "package data files" on setuptools documentation page: 2024-06-22T14:00:39,803 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-06-22T14:00:39,805 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-06-22T14:00:39,805 even if it does not contain any `.py` files. 2024-06-22T14:00:39,806 On the other hand, currently there is no concept of package data 2024-06-22T14:00:39,806 directory, all directories are treated like packages. 2024-06-22T14:00:39,807 ******************************************************************************** 2024-06-22T14:00:39,808 !! 2024-06-22T14:00:39,808 check.warn(importable) 2024-06-22T14:00:39,809 /tmp/pip-build-env-ye0gin6m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.ivar' is absent from the `packages` configuration. 2024-06-22T14:00:39,809 !! 2024-06-22T14:00:39,810 ******************************************************************************** 2024-06-22T14:00:39,811 ############################ 2024-06-22T14:00:39,811 # Package would be ignored # 2024-06-22T14:00:39,811 ############################ 2024-06-22T14:00:39,812 Python recognizes 'multiqc.modules.ivar' as an importable package[^1], 2024-06-22T14:00:39,812 but it is absent from setuptools' `packages` configuration. 2024-06-22T14:00:39,813 This leads to an ambiguous overall configuration. If you want to distribute this 2024-06-22T14:00:39,813 package, please make sure that 'multiqc.modules.ivar' is explicitly added 2024-06-22T14:00:39,814 to the `packages` configuration field. 2024-06-22T14:00:39,814 Alternatively, you can also rely on setuptools' discovery methods 2024-06-22T14:00:39,815 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-06-22T14:00:39,815 instead of `find_packages(...)`/`find:`). 2024-06-22T14:00:39,816 You can read more about "package discovery" on setuptools documentation page: 2024-06-22T14:00:39,817 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-06-22T14:00:39,817 If you don't want 'multiqc.modules.ivar' to be distributed and are 2024-06-22T14:00:39,818 already explicitly excluding 'multiqc.modules.ivar' via 2024-06-22T14:00:39,818 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-06-22T14:00:39,818 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-06-22T14:00:39,819 combination with a more fine grained `package-data` configuration. 2024-06-22T14:00:39,820 You can read more about "package data files" on setuptools documentation page: 2024-06-22T14:00:39,821 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-06-22T14:00:39,822 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-06-22T14:00:39,823 even if it does not contain any `.py` files. 2024-06-22T14:00:39,823 On the other hand, currently there is no concept of package data 2024-06-22T14:00:39,824 directory, all directories are treated like packages. 2024-06-22T14:00:39,825 ******************************************************************************** 2024-06-22T14:00:39,826 !! 2024-06-22T14:00:39,826 check.warn(importable) 2024-06-22T14:00:39,826 /tmp/pip-build-env-ye0gin6m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.jcvi' is absent from the `packages` configuration. 2024-06-22T14:00:39,827 !! 2024-06-22T14:00:39,828 ******************************************************************************** 2024-06-22T14:00:39,829 ############################ 2024-06-22T14:00:39,829 # Package would be ignored # 2024-06-22T14:00:39,830 ############################ 2024-06-22T14:00:39,830 Python recognizes 'multiqc.modules.jcvi' as an importable package[^1], 2024-06-22T14:00:39,831 but it is absent from setuptools' `packages` configuration. 2024-06-22T14:00:39,832 This leads to an ambiguous overall configuration. If you want to distribute this 2024-06-22T14:00:39,832 package, please make sure that 'multiqc.modules.jcvi' is explicitly added 2024-06-22T14:00:39,833 to the `packages` configuration field. 2024-06-22T14:00:39,834 Alternatively, you can also rely on setuptools' discovery methods 2024-06-22T14:00:39,834 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-06-22T14:00:39,835 instead of `find_packages(...)`/`find:`). 2024-06-22T14:00:39,836 You can read more about "package discovery" on setuptools documentation page: 2024-06-22T14:00:39,837 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-06-22T14:00:39,838 If you don't want 'multiqc.modules.jcvi' to be distributed and are 2024-06-22T14:00:39,838 already explicitly excluding 'multiqc.modules.jcvi' via 2024-06-22T14:00:39,839 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-06-22T14:00:39,839 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-06-22T14:00:39,839 combination with a more fine grained `package-data` configuration. 2024-06-22T14:00:39,840 You can read more about "package data files" on setuptools documentation page: 2024-06-22T14:00:39,841 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-06-22T14:00:39,842 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-06-22T14:00:39,842 even if it does not contain any `.py` files. 2024-06-22T14:00:39,842 On the other hand, currently there is no concept of package data 2024-06-22T14:00:39,843 directory, all directories are treated like packages. 2024-06-22T14:00:39,843 ******************************************************************************** 2024-06-22T14:00:39,844 !! 2024-06-22T14:00:39,844 check.warn(importable) 2024-06-22T14:00:39,845 /tmp/pip-build-env-ye0gin6m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.jellyfish' is absent from the `packages` configuration. 2024-06-22T14:00:39,845 !! 2024-06-22T14:00:39,846 ******************************************************************************** 2024-06-22T14:00:39,847 ############################ 2024-06-22T14:00:39,847 # Package would be ignored # 2024-06-22T14:00:39,848 ############################ 2024-06-22T14:00:39,848 Python recognizes 'multiqc.modules.jellyfish' as an importable package[^1], 2024-06-22T14:00:39,849 but it is absent from setuptools' `packages` configuration. 2024-06-22T14:00:39,850 This leads to an ambiguous overall configuration. If you want to distribute this 2024-06-22T14:00:39,850 package, please make sure that 'multiqc.modules.jellyfish' is explicitly added 2024-06-22T14:00:39,851 to the `packages` configuration field. 2024-06-22T14:00:39,852 Alternatively, you can also rely on setuptools' discovery methods 2024-06-22T14:00:39,852 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-06-22T14:00:39,853 instead of `find_packages(...)`/`find:`). 2024-06-22T14:00:39,854 You can read more about "package discovery" on setuptools documentation page: 2024-06-22T14:00:39,855 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-06-22T14:00:39,856 If you don't want 'multiqc.modules.jellyfish' to be distributed and are 2024-06-22T14:00:39,856 already explicitly excluding 'multiqc.modules.jellyfish' via 2024-06-22T14:00:39,857 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-06-22T14:00:39,857 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-06-22T14:00:39,858 combination with a more fine grained `package-data` configuration. 2024-06-22T14:00:39,859 You can read more about "package data files" on setuptools documentation page: 2024-06-22T14:00:39,860 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-06-22T14:00:39,861 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-06-22T14:00:39,862 even if it does not contain any `.py` files. 2024-06-22T14:00:39,862 On the other hand, currently there is no concept of package data 2024-06-22T14:00:39,863 directory, all directories are treated like packages. 2024-06-22T14:00:39,864 ******************************************************************************** 2024-06-22T14:00:39,865 !! 2024-06-22T14:00:39,865 check.warn(importable) 2024-06-22T14:00:39,865 /tmp/pip-build-env-ye0gin6m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.kaiju' is absent from the `packages` configuration. 2024-06-22T14:00:39,866 !! 2024-06-22T14:00:39,866 ******************************************************************************** 2024-06-22T14:00:39,867 ############################ 2024-06-22T14:00:39,867 # Package would be ignored # 2024-06-22T14:00:39,867 ############################ 2024-06-22T14:00:39,868 Python recognizes 'multiqc.modules.kaiju' as an importable package[^1], 2024-06-22T14:00:39,868 but it is absent from setuptools' `packages` configuration. 2024-06-22T14:00:39,869 This leads to an ambiguous overall configuration. If you want to distribute this 2024-06-22T14:00:39,869 package, please make sure that 'multiqc.modules.kaiju' is explicitly added 2024-06-22T14:00:39,870 to the `packages` configuration field. 2024-06-22T14:00:39,871 Alternatively, you can also rely on setuptools' discovery methods 2024-06-22T14:00:39,871 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-06-22T14:00:39,871 instead of `find_packages(...)`/`find:`). 2024-06-22T14:00:39,872 You can read more about "package discovery" on setuptools documentation page: 2024-06-22T14:00:39,873 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-06-22T14:00:39,874 If you don't want 'multiqc.modules.kaiju' to be distributed and are 2024-06-22T14:00:39,875 already explicitly excluding 'multiqc.modules.kaiju' via 2024-06-22T14:00:39,875 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-06-22T14:00:39,876 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-06-22T14:00:39,876 combination with a more fine grained `package-data` configuration. 2024-06-22T14:00:39,877 You can read more about "package data files" on setuptools documentation page: 2024-06-22T14:00:39,878 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-06-22T14:00:39,880 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-06-22T14:00:39,881 even if it does not contain any `.py` files. 2024-06-22T14:00:39,881 On the other hand, currently there is no concept of package data 2024-06-22T14:00:39,882 directory, all directories are treated like packages. 2024-06-22T14:00:39,882 ******************************************************************************** 2024-06-22T14:00:39,883 !! 2024-06-22T14:00:39,884 check.warn(importable) 2024-06-22T14:00:39,884 /tmp/pip-build-env-ye0gin6m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.kallisto' is absent from the `packages` configuration. 2024-06-22T14:00:39,885 !! 2024-06-22T14:00:39,886 ******************************************************************************** 2024-06-22T14:00:39,886 ############################ 2024-06-22T14:00:39,887 # Package would be ignored # 2024-06-22T14:00:39,887 ############################ 2024-06-22T14:00:39,888 Python recognizes 'multiqc.modules.kallisto' as an importable package[^1], 2024-06-22T14:00:39,888 but it is absent from setuptools' `packages` configuration. 2024-06-22T14:00:39,889 This leads to an ambiguous overall configuration. If you want to distribute this 2024-06-22T14:00:39,890 package, please make sure that 'multiqc.modules.kallisto' is explicitly added 2024-06-22T14:00:39,890 to the `packages` configuration field. 2024-06-22T14:00:39,892 Alternatively, you can also rely on setuptools' discovery methods 2024-06-22T14:00:39,892 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-06-22T14:00:39,892 instead of `find_packages(...)`/`find:`). 2024-06-22T14:00:39,893 You can read more about "package discovery" on setuptools documentation page: 2024-06-22T14:00:39,894 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-06-22T14:00:39,894 If you don't want 'multiqc.modules.kallisto' to be distributed and are 2024-06-22T14:00:39,895 already explicitly excluding 'multiqc.modules.kallisto' via 2024-06-22T14:00:39,895 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-06-22T14:00:39,895 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-06-22T14:00:39,896 combination with a more fine grained `package-data` configuration. 2024-06-22T14:00:39,897 You can read more about "package data files" on setuptools documentation page: 2024-06-22T14:00:39,898 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-06-22T14:00:39,899 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-06-22T14:00:39,899 even if it does not contain any `.py` files. 2024-06-22T14:00:39,900 On the other hand, currently there is no concept of package data 2024-06-22T14:00:39,900 directory, all directories are treated like packages. 2024-06-22T14:00:39,901 ******************************************************************************** 2024-06-22T14:00:39,902 !! 2024-06-22T14:00:39,903 check.warn(importable) 2024-06-22T14:00:39,903 /tmp/pip-build-env-ye0gin6m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.kat' is absent from the `packages` configuration. 2024-06-22T14:00:39,904 !! 2024-06-22T14:00:39,904 ******************************************************************************** 2024-06-22T14:00:39,905 ############################ 2024-06-22T14:00:39,905 # Package would be ignored # 2024-06-22T14:00:39,906 ############################ 2024-06-22T14:00:39,907 Python recognizes 'multiqc.modules.kat' as an importable package[^1], 2024-06-22T14:00:39,907 but it is absent from setuptools' `packages` configuration. 2024-06-22T14:00:39,908 This leads to an ambiguous overall configuration. If you want to distribute this 2024-06-22T14:00:39,909 package, please make sure that 'multiqc.modules.kat' is explicitly added 2024-06-22T14:00:39,909 to the `packages` configuration field. 2024-06-22T14:00:39,910 Alternatively, you can also rely on setuptools' discovery methods 2024-06-22T14:00:39,911 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-06-22T14:00:39,911 instead of `find_packages(...)`/`find:`). 2024-06-22T14:00:39,912 You can read more about "package discovery" on setuptools documentation page: 2024-06-22T14:00:39,913 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-06-22T14:00:39,914 If you don't want 'multiqc.modules.kat' to be distributed and are 2024-06-22T14:00:39,915 already explicitly excluding 'multiqc.modules.kat' via 2024-06-22T14:00:39,915 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-06-22T14:00:39,916 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-06-22T14:00:39,916 combination with a more fine grained `package-data` configuration. 2024-06-22T14:00:39,917 You can read more about "package data files" on setuptools documentation page: 2024-06-22T14:00:39,919 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-06-22T14:00:39,920 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-06-22T14:00:39,920 even if it does not contain any `.py` files. 2024-06-22T14:00:39,920 On the other hand, currently there is no concept of package data 2024-06-22T14:00:39,921 directory, all directories are treated like packages. 2024-06-22T14:00:39,921 ******************************************************************************** 2024-06-22T14:00:39,922 !! 2024-06-22T14:00:39,922 check.warn(importable) 2024-06-22T14:00:39,922 /tmp/pip-build-env-ye0gin6m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.kraken' is absent from the `packages` configuration. 2024-06-22T14:00:39,923 !! 2024-06-22T14:00:39,924 ******************************************************************************** 2024-06-22T14:00:39,924 ############################ 2024-06-22T14:00:39,924 # Package would be ignored # 2024-06-22T14:00:39,925 ############################ 2024-06-22T14:00:39,925 Python recognizes 'multiqc.modules.kraken' as an importable package[^1], 2024-06-22T14:00:39,925 but it is absent from setuptools' `packages` configuration. 2024-06-22T14:00:39,926 This leads to an ambiguous overall configuration. If you want to distribute this 2024-06-22T14:00:39,926 package, please make sure that 'multiqc.modules.kraken' is explicitly added 2024-06-22T14:00:39,927 to the `packages` configuration field. 2024-06-22T14:00:39,928 Alternatively, you can also rely on setuptools' discovery methods 2024-06-22T14:00:39,928 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-06-22T14:00:39,929 instead of `find_packages(...)`/`find:`). 2024-06-22T14:00:39,930 You can read more about "package discovery" on setuptools documentation page: 2024-06-22T14:00:39,931 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-06-22T14:00:39,932 If you don't want 'multiqc.modules.kraken' to be distributed and are 2024-06-22T14:00:39,933 already explicitly excluding 'multiqc.modules.kraken' via 2024-06-22T14:00:39,933 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-06-22T14:00:39,934 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-06-22T14:00:39,935 combination with a more fine grained `package-data` configuration. 2024-06-22T14:00:39,936 You can read more about "package data files" on setuptools documentation page: 2024-06-22T14:00:39,937 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-06-22T14:00:39,938 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-06-22T14:00:39,938 even if it does not contain any `.py` files. 2024-06-22T14:00:39,939 On the other hand, currently there is no concept of package data 2024-06-22T14:00:39,939 directory, all directories are treated like packages. 2024-06-22T14:00:39,940 ******************************************************************************** 2024-06-22T14:00:39,941 !! 2024-06-22T14:00:39,941 check.warn(importable) 2024-06-22T14:00:39,942 /tmp/pip-build-env-ye0gin6m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.leehom' is absent from the `packages` configuration. 2024-06-22T14:00:39,942 !! 2024-06-22T14:00:39,944 ******************************************************************************** 2024-06-22T14:00:39,944 ############################ 2024-06-22T14:00:39,945 # Package would be ignored # 2024-06-22T14:00:39,945 ############################ 2024-06-22T14:00:39,946 Python recognizes 'multiqc.modules.leehom' as an importable package[^1], 2024-06-22T14:00:39,947 but it is absent from setuptools' `packages` configuration. 2024-06-22T14:00:39,947 This leads to an ambiguous overall configuration. If you want to distribute this 2024-06-22T14:00:39,948 package, please make sure that 'multiqc.modules.leehom' is explicitly added 2024-06-22T14:00:39,948 to the `packages` configuration field. 2024-06-22T14:00:39,949 Alternatively, you can also rely on setuptools' discovery methods 2024-06-22T14:00:39,949 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-06-22T14:00:39,949 instead of `find_packages(...)`/`find:`). 2024-06-22T14:00:39,950 You can read more about "package discovery" on setuptools documentation page: 2024-06-22T14:00:39,951 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-06-22T14:00:39,951 If you don't want 'multiqc.modules.leehom' to be distributed and are 2024-06-22T14:00:39,952 already explicitly excluding 'multiqc.modules.leehom' via 2024-06-22T14:00:39,952 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-06-22T14:00:39,953 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-06-22T14:00:39,953 combination with a more fine grained `package-data` configuration. 2024-06-22T14:00:39,954 You can read more about "package data files" on setuptools documentation page: 2024-06-22T14:00:39,955 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-06-22T14:00:39,956 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-06-22T14:00:39,957 even if it does not contain any `.py` files. 2024-06-22T14:00:39,957 On the other hand, currently there is no concept of package data 2024-06-22T14:00:39,958 directory, all directories are treated like packages. 2024-06-22T14:00:39,959 ******************************************************************************** 2024-06-22T14:00:39,960 !! 2024-06-22T14:00:39,960 check.warn(importable) 2024-06-22T14:00:39,961 /tmp/pip-build-env-ye0gin6m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.librarian' is absent from the `packages` configuration. 2024-06-22T14:00:39,961 !! 2024-06-22T14:00:39,963 ******************************************************************************** 2024-06-22T14:00:39,963 ############################ 2024-06-22T14:00:39,964 # Package would be ignored # 2024-06-22T14:00:39,964 ############################ 2024-06-22T14:00:39,965 Python recognizes 'multiqc.modules.librarian' as an importable package[^1], 2024-06-22T14:00:39,965 but it is absent from setuptools' `packages` configuration. 2024-06-22T14:00:39,966 This leads to an ambiguous overall configuration. If you want to distribute this 2024-06-22T14:00:39,967 package, please make sure that 'multiqc.modules.librarian' is explicitly added 2024-06-22T14:00:39,967 to the `packages` configuration field. 2024-06-22T14:00:39,968 Alternatively, you can also rely on setuptools' discovery methods 2024-06-22T14:00:39,968 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-06-22T14:00:39,969 instead of `find_packages(...)`/`find:`). 2024-06-22T14:00:39,970 You can read more about "package discovery" on setuptools documentation page: 2024-06-22T14:00:39,971 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-06-22T14:00:39,972 If you don't want 'multiqc.modules.librarian' to be distributed and are 2024-06-22T14:00:39,972 already explicitly excluding 'multiqc.modules.librarian' via 2024-06-22T14:00:39,973 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-06-22T14:00:39,974 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-06-22T14:00:39,974 combination with a more fine grained `package-data` configuration. 2024-06-22T14:00:39,975 You can read more about "package data files" on setuptools documentation page: 2024-06-22T14:00:39,976 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-06-22T14:00:39,977 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-06-22T14:00:39,977 even if it does not contain any `.py` files. 2024-06-22T14:00:39,978 On the other hand, currently there is no concept of package data 2024-06-22T14:00:39,978 directory, all directories are treated like packages. 2024-06-22T14:00:39,979 ******************************************************************************** 2024-06-22T14:00:39,980 !! 2024-06-22T14:00:39,980 check.warn(importable) 2024-06-22T14:00:39,980 /tmp/pip-build-env-ye0gin6m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.lima' is absent from the `packages` configuration. 2024-06-22T14:00:39,981 !! 2024-06-22T14:00:39,982 ******************************************************************************** 2024-06-22T14:00:39,982 ############################ 2024-06-22T14:00:39,982 # Package would be ignored # 2024-06-22T14:00:39,983 ############################ 2024-06-22T14:00:39,983 Python recognizes 'multiqc.modules.lima' as an importable package[^1], 2024-06-22T14:00:39,984 but it is absent from setuptools' `packages` configuration. 2024-06-22T14:00:39,985 This leads to an ambiguous overall configuration. If you want to distribute this 2024-06-22T14:00:39,985 package, please make sure that 'multiqc.modules.lima' is explicitly added 2024-06-22T14:00:39,986 to the `packages` configuration field. 2024-06-22T14:00:39,987 Alternatively, you can also rely on setuptools' discovery methods 2024-06-22T14:00:39,987 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-06-22T14:00:39,987 instead of `find_packages(...)`/`find:`). 2024-06-22T14:00:39,988 You can read more about "package discovery" on setuptools documentation page: 2024-06-22T14:00:39,989 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-06-22T14:00:39,990 If you don't want 'multiqc.modules.lima' to be distributed and are 2024-06-22T14:00:39,990 already explicitly excluding 'multiqc.modules.lima' via 2024-06-22T14:00:39,991 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-06-22T14:00:39,991 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-06-22T14:00:39,992 combination with a more fine grained `package-data` configuration. 2024-06-22T14:00:39,993 You can read more about "package data files" on setuptools documentation page: 2024-06-22T14:00:39,994 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-06-22T14:00:39,995 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-06-22T14:00:39,996 even if it does not contain any `.py` files. 2024-06-22T14:00:39,997 On the other hand, currently there is no concept of package data 2024-06-22T14:00:39,997 directory, all directories are treated like packages. 2024-06-22T14:00:39,998 ******************************************************************************** 2024-06-22T14:00:39,999 !! 2024-06-22T14:00:39,999 check.warn(importable) 2024-06-22T14:00:40,000 /tmp/pip-build-env-ye0gin6m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.longranger' is absent from the `packages` configuration. 2024-06-22T14:00:40,000 !! 2024-06-22T14:00:40,002 ******************************************************************************** 2024-06-22T14:00:40,002 ############################ 2024-06-22T14:00:40,002 # Package would be ignored # 2024-06-22T14:00:40,003 ############################ 2024-06-22T14:00:40,003 Python recognizes 'multiqc.modules.longranger' as an importable package[^1], 2024-06-22T14:00:40,003 but it is absent from setuptools' `packages` configuration. 2024-06-22T14:00:40,004 This leads to an ambiguous overall configuration. If you want to distribute this 2024-06-22T14:00:40,004 package, please make sure that 'multiqc.modules.longranger' is explicitly added 2024-06-22T14:00:40,005 to the `packages` configuration field. 2024-06-22T14:00:40,006 Alternatively, you can also rely on setuptools' discovery methods 2024-06-22T14:00:40,006 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-06-22T14:00:40,006 instead of `find_packages(...)`/`find:`). 2024-06-22T14:00:40,007 You can read more about "package discovery" on setuptools documentation page: 2024-06-22T14:00:40,008 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-06-22T14:00:40,009 If you don't want 'multiqc.modules.longranger' to be distributed and are 2024-06-22T14:00:40,009 already explicitly excluding 'multiqc.modules.longranger' via 2024-06-22T14:00:40,010 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-06-22T14:00:40,010 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-06-22T14:00:40,011 combination with a more fine grained `package-data` configuration. 2024-06-22T14:00:40,012 You can read more about "package data files" on setuptools documentation page: 2024-06-22T14:00:40,012 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-06-22T14:00:40,014 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-06-22T14:00:40,014 even if it does not contain any `.py` files. 2024-06-22T14:00:40,015 On the other hand, currently there is no concept of package data 2024-06-22T14:00:40,015 directory, all directories are treated like packages. 2024-06-22T14:00:40,016 ******************************************************************************** 2024-06-22T14:00:40,017 !! 2024-06-22T14:00:40,017 check.warn(importable) 2024-06-22T14:00:40,018 /tmp/pip-build-env-ye0gin6m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.macs2' is absent from the `packages` configuration. 2024-06-22T14:00:40,018 !! 2024-06-22T14:00:40,019 ******************************************************************************** 2024-06-22T14:00:40,020 ############################ 2024-06-22T14:00:40,020 # Package would be ignored # 2024-06-22T14:00:40,020 ############################ 2024-06-22T14:00:40,021 Python recognizes 'multiqc.modules.macs2' as an importable package[^1], 2024-06-22T14:00:40,021 but it is absent from setuptools' `packages` configuration. 2024-06-22T14:00:40,022 This leads to an ambiguous overall configuration. If you want to distribute this 2024-06-22T14:00:40,023 package, please make sure that 'multiqc.modules.macs2' is explicitly added 2024-06-22T14:00:40,023 to the `packages` configuration field. 2024-06-22T14:00:40,025 Alternatively, you can also rely on setuptools' discovery methods 2024-06-22T14:00:40,025 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-06-22T14:00:40,026 instead of `find_packages(...)`/`find:`). 2024-06-22T14:00:40,027 You can read more about "package discovery" on setuptools documentation page: 2024-06-22T14:00:40,027 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-06-22T14:00:40,028 If you don't want 'multiqc.modules.macs2' to be distributed and are 2024-06-22T14:00:40,029 already explicitly excluding 'multiqc.modules.macs2' via 2024-06-22T14:00:40,029 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-06-22T14:00:40,029 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-06-22T14:00:40,030 combination with a more fine grained `package-data` configuration. 2024-06-22T14:00:40,030 You can read more about "package data files" on setuptools documentation page: 2024-06-22T14:00:40,031 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-06-22T14:00:40,032 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-06-22T14:00:40,032 even if it does not contain any `.py` files. 2024-06-22T14:00:40,033 On the other hand, currently there is no concept of package data 2024-06-22T14:00:40,033 directory, all directories are treated like packages. 2024-06-22T14:00:40,034 ******************************************************************************** 2024-06-22T14:00:40,035 !! 2024-06-22T14:00:40,035 check.warn(importable) 2024-06-22T14:00:40,036 /tmp/pip-build-env-ye0gin6m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.malt' is absent from the `packages` configuration. 2024-06-22T14:00:40,036 !! 2024-06-22T14:00:40,037 ******************************************************************************** 2024-06-22T14:00:40,038 ############################ 2024-06-22T14:00:40,038 # Package would be ignored # 2024-06-22T14:00:40,039 ############################ 2024-06-22T14:00:40,039 Python recognizes 'multiqc.modules.malt' as an importable package[^1], 2024-06-22T14:00:40,040 but it is absent from setuptools' `packages` configuration. 2024-06-22T14:00:40,041 This leads to an ambiguous overall configuration. If you want to distribute this 2024-06-22T14:00:40,042 package, please make sure that 'multiqc.modules.malt' is explicitly added 2024-06-22T14:00:40,042 to the `packages` configuration field. 2024-06-22T14:00:40,043 Alternatively, you can also rely on setuptools' discovery methods 2024-06-22T14:00:40,044 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-06-22T14:00:40,044 instead of `find_packages(...)`/`find:`). 2024-06-22T14:00:40,045 You can read more about "package discovery" on setuptools documentation page: 2024-06-22T14:00:40,046 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-06-22T14:00:40,047 If you don't want 'multiqc.modules.malt' to be distributed and are 2024-06-22T14:00:40,048 already explicitly excluding 'multiqc.modules.malt' via 2024-06-22T14:00:40,048 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-06-22T14:00:40,049 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-06-22T14:00:40,050 combination with a more fine grained `package-data` configuration. 2024-06-22T14:00:40,051 You can read more about "package data files" on setuptools documentation page: 2024-06-22T14:00:40,052 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-06-22T14:00:40,053 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-06-22T14:00:40,054 even if it does not contain any `.py` files. 2024-06-22T14:00:40,055 On the other hand, currently there is no concept of package data 2024-06-22T14:00:40,055 directory, all directories are treated like packages. 2024-06-22T14:00:40,056 ******************************************************************************** 2024-06-22T14:00:40,056 !! 2024-06-22T14:00:40,057 check.warn(importable) 2024-06-22T14:00:40,057 /tmp/pip-build-env-ye0gin6m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.mapdamage' is absent from the `packages` configuration. 2024-06-22T14:00:40,057 !! 2024-06-22T14:00:40,058 ******************************************************************************** 2024-06-22T14:00:40,058 ############################ 2024-06-22T14:00:40,059 # Package would be ignored # 2024-06-22T14:00:40,059 ############################ 2024-06-22T14:00:40,060 Python recognizes 'multiqc.modules.mapdamage' as an importable package[^1], 2024-06-22T14:00:40,060 but it is absent from setuptools' `packages` configuration. 2024-06-22T14:00:40,061 This leads to an ambiguous overall configuration. If you want to distribute this 2024-06-22T14:00:40,061 package, please make sure that 'multiqc.modules.mapdamage' is explicitly added 2024-06-22T14:00:40,061 to the `packages` configuration field. 2024-06-22T14:00:40,062 Alternatively, you can also rely on setuptools' discovery methods 2024-06-22T14:00:40,063 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-06-22T14:00:40,063 instead of `find_packages(...)`/`find:`). 2024-06-22T14:00:40,064 You can read more about "package discovery" on setuptools documentation page: 2024-06-22T14:00:40,065 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-06-22T14:00:40,066 If you don't want 'multiqc.modules.mapdamage' to be distributed and are 2024-06-22T14:00:40,066 already explicitly excluding 'multiqc.modules.mapdamage' via 2024-06-22T14:00:40,067 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-06-22T14:00:40,067 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-06-22T14:00:40,068 combination with a more fine grained `package-data` configuration. 2024-06-22T14:00:40,069 You can read more about "package data files" on setuptools documentation page: 2024-06-22T14:00:40,070 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-06-22T14:00:40,071 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-06-22T14:00:40,072 even if it does not contain any `.py` files. 2024-06-22T14:00:40,072 On the other hand, currently there is no concept of package data 2024-06-22T14:00:40,072 directory, all directories are treated like packages. 2024-06-22T14:00:40,073 ******************************************************************************** 2024-06-22T14:00:40,074 !! 2024-06-22T14:00:40,074 check.warn(importable) 2024-06-22T14:00:40,075 /tmp/pip-build-env-ye0gin6m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.megahit' is absent from the `packages` configuration. 2024-06-22T14:00:40,075 !! 2024-06-22T14:00:40,076 ******************************************************************************** 2024-06-22T14:00:40,077 ############################ 2024-06-22T14:00:40,077 # Package would be ignored # 2024-06-22T14:00:40,078 ############################ 2024-06-22T14:00:40,078 Python recognizes 'multiqc.modules.megahit' as an importable package[^1], 2024-06-22T14:00:40,079 but it is absent from setuptools' `packages` configuration. 2024-06-22T14:00:40,080 This leads to an ambiguous overall configuration. If you want to distribute this 2024-06-22T14:00:40,080 package, please make sure that 'multiqc.modules.megahit' is explicitly added 2024-06-22T14:00:40,081 to the `packages` configuration field. 2024-06-22T14:00:40,082 Alternatively, you can also rely on setuptools' discovery methods 2024-06-22T14:00:40,082 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-06-22T14:00:40,083 instead of `find_packages(...)`/`find:`). 2024-06-22T14:00:40,083 You can read more about "package discovery" on setuptools documentation page: 2024-06-22T14:00:40,084 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-06-22T14:00:40,085 If you don't want 'multiqc.modules.megahit' to be distributed and are 2024-06-22T14:00:40,085 already explicitly excluding 'multiqc.modules.megahit' via 2024-06-22T14:00:40,085 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-06-22T14:00:40,086 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-06-22T14:00:40,086 combination with a more fine grained `package-data` configuration. 2024-06-22T14:00:40,087 You can read more about "package data files" on setuptools documentation page: 2024-06-22T14:00:40,087 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-06-22T14:00:40,089 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-06-22T14:00:40,089 even if it does not contain any `.py` files. 2024-06-22T14:00:40,089 On the other hand, currently there is no concept of package data 2024-06-22T14:00:40,090 directory, all directories are treated like packages. 2024-06-22T14:00:40,090 ******************************************************************************** 2024-06-22T14:00:40,091 !! 2024-06-22T14:00:40,092 check.warn(importable) 2024-06-22T14:00:40,092 /tmp/pip-build-env-ye0gin6m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.metaphlan' is absent from the `packages` configuration. 2024-06-22T14:00:40,093 !! 2024-06-22T14:00:40,094 ******************************************************************************** 2024-06-22T14:00:40,094 ############################ 2024-06-22T14:00:40,095 # Package would be ignored # 2024-06-22T14:00:40,095 ############################ 2024-06-22T14:00:40,096 Python recognizes 'multiqc.modules.metaphlan' as an importable package[^1], 2024-06-22T14:00:40,096 but it is absent from setuptools' `packages` configuration. 2024-06-22T14:00:40,097 This leads to an ambiguous overall configuration. If you want to distribute this 2024-06-22T14:00:40,098 package, please make sure that 'multiqc.modules.metaphlan' is explicitly added 2024-06-22T14:00:40,098 to the `packages` configuration field. 2024-06-22T14:00:40,099 Alternatively, you can also rely on setuptools' discovery methods 2024-06-22T14:00:40,100 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-06-22T14:00:40,100 instead of `find_packages(...)`/`find:`). 2024-06-22T14:00:40,101 You can read more about "package discovery" on setuptools documentation page: 2024-06-22T14:00:40,102 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-06-22T14:00:40,103 If you don't want 'multiqc.modules.metaphlan' to be distributed and are 2024-06-22T14:00:40,104 already explicitly excluding 'multiqc.modules.metaphlan' via 2024-06-22T14:00:40,104 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-06-22T14:00:40,105 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-06-22T14:00:40,105 combination with a more fine grained `package-data` configuration. 2024-06-22T14:00:40,106 You can read more about "package data files" on setuptools documentation page: 2024-06-22T14:00:40,107 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-06-22T14:00:40,108 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-06-22T14:00:40,109 even if it does not contain any `.py` files. 2024-06-22T14:00:40,109 On the other hand, currently there is no concept of package data 2024-06-22T14:00:40,109 directory, all directories are treated like packages. 2024-06-22T14:00:40,110 ******************************************************************************** 2024-06-22T14:00:40,110 !! 2024-06-22T14:00:40,111 check.warn(importable) 2024-06-22T14:00:40,111 /tmp/pip-build-env-ye0gin6m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.methylqa' is absent from the `packages` configuration. 2024-06-22T14:00:40,112 !! 2024-06-22T14:00:40,112 ******************************************************************************** 2024-06-22T14:00:40,113 ############################ 2024-06-22T14:00:40,113 # Package would be ignored # 2024-06-22T14:00:40,113 ############################ 2024-06-22T14:00:40,114 Python recognizes 'multiqc.modules.methylqa' as an importable package[^1], 2024-06-22T14:00:40,114 but it is absent from setuptools' `packages` configuration. 2024-06-22T14:00:40,115 This leads to an ambiguous overall configuration. If you want to distribute this 2024-06-22T14:00:40,116 package, please make sure that 'multiqc.modules.methylqa' is explicitly added 2024-06-22T14:00:40,116 to the `packages` configuration field. 2024-06-22T14:00:40,117 Alternatively, you can also rely on setuptools' discovery methods 2024-06-22T14:00:40,118 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-06-22T14:00:40,118 instead of `find_packages(...)`/`find:`). 2024-06-22T14:00:40,119 You can read more about "package discovery" on setuptools documentation page: 2024-06-22T14:00:40,121 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-06-22T14:00:40,122 If you don't want 'multiqc.modules.methylqa' to be distributed and are 2024-06-22T14:00:40,123 already explicitly excluding 'multiqc.modules.methylqa' via 2024-06-22T14:00:40,123 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-06-22T14:00:40,124 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-06-22T14:00:40,125 combination with a more fine grained `package-data` configuration. 2024-06-22T14:00:40,126 You can read more about "package data files" on setuptools documentation page: 2024-06-22T14:00:40,127 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-06-22T14:00:40,128 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-06-22T14:00:40,128 even if it does not contain any `.py` files. 2024-06-22T14:00:40,129 On the other hand, currently there is no concept of package data 2024-06-22T14:00:40,130 directory, all directories are treated like packages. 2024-06-22T14:00:40,131 ******************************************************************************** 2024-06-22T14:00:40,134 !! 2024-06-22T14:00:40,135 check.warn(importable) 2024-06-22T14:00:40,136 /tmp/pip-build-env-ye0gin6m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.minionqc' is absent from the `packages` configuration. 2024-06-22T14:00:40,136 !! 2024-06-22T14:00:40,138 ******************************************************************************** 2024-06-22T14:00:40,138 ############################ 2024-06-22T14:00:40,139 # Package would be ignored # 2024-06-22T14:00:40,139 ############################ 2024-06-22T14:00:40,139 Python recognizes 'multiqc.modules.minionqc' as an importable package[^1], 2024-06-22T14:00:40,140 but it is absent from setuptools' `packages` configuration. 2024-06-22T14:00:40,140 This leads to an ambiguous overall configuration. If you want to distribute this 2024-06-22T14:00:40,141 package, please make sure that 'multiqc.modules.minionqc' is explicitly added 2024-06-22T14:00:40,141 to the `packages` configuration field. 2024-06-22T14:00:40,142 Alternatively, you can also rely on setuptools' discovery methods 2024-06-22T14:00:40,142 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-06-22T14:00:40,143 instead of `find_packages(...)`/`find:`). 2024-06-22T14:00:40,143 You can read more about "package discovery" on setuptools documentation page: 2024-06-22T14:00:40,144 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-06-22T14:00:40,145 If you don't want 'multiqc.modules.minionqc' to be distributed and are 2024-06-22T14:00:40,145 already explicitly excluding 'multiqc.modules.minionqc' via 2024-06-22T14:00:40,145 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-06-22T14:00:40,146 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-06-22T14:00:40,146 combination with a more fine grained `package-data` configuration. 2024-06-22T14:00:40,147 You can read more about "package data files" on setuptools documentation page: 2024-06-22T14:00:40,148 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-06-22T14:00:40,150 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-06-22T14:00:40,150 even if it does not contain any `.py` files. 2024-06-22T14:00:40,151 On the other hand, currently there is no concept of package data 2024-06-22T14:00:40,151 directory, all directories are treated like packages. 2024-06-22T14:00:40,152 ******************************************************************************** 2024-06-22T14:00:40,153 !! 2024-06-22T14:00:40,153 check.warn(importable) 2024-06-22T14:00:40,154 /tmp/pip-build-env-ye0gin6m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.mirtop' is absent from the `packages` configuration. 2024-06-22T14:00:40,155 !! 2024-06-22T14:00:40,156 ******************************************************************************** 2024-06-22T14:00:40,156 ############################ 2024-06-22T14:00:40,157 # Package would be ignored # 2024-06-22T14:00:40,157 ############################ 2024-06-22T14:00:40,157 Python recognizes 'multiqc.modules.mirtop' as an importable package[^1], 2024-06-22T14:00:40,158 but it is absent from setuptools' `packages` configuration. 2024-06-22T14:00:40,159 This leads to an ambiguous overall configuration. If you want to distribute this 2024-06-22T14:00:40,159 package, please make sure that 'multiqc.modules.mirtop' is explicitly added 2024-06-22T14:00:40,160 to the `packages` configuration field. 2024-06-22T14:00:40,161 Alternatively, you can also rely on setuptools' discovery methods 2024-06-22T14:00:40,162 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-06-22T14:00:40,162 instead of `find_packages(...)`/`find:`). 2024-06-22T14:00:40,163 You can read more about "package discovery" on setuptools documentation page: 2024-06-22T14:00:40,164 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-06-22T14:00:40,166 If you don't want 'multiqc.modules.mirtop' to be distributed and are 2024-06-22T14:00:40,166 already explicitly excluding 'multiqc.modules.mirtop' via 2024-06-22T14:00:40,166 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-06-22T14:00:40,167 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-06-22T14:00:40,167 combination with a more fine grained `package-data` configuration. 2024-06-22T14:00:40,168 You can read more about "package data files" on setuptools documentation page: 2024-06-22T14:00:40,169 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-06-22T14:00:40,170 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-06-22T14:00:40,170 even if it does not contain any `.py` files. 2024-06-22T14:00:40,171 On the other hand, currently there is no concept of package data 2024-06-22T14:00:40,171 directory, all directories are treated like packages. 2024-06-22T14:00:40,172 ******************************************************************************** 2024-06-22T14:00:40,172 !! 2024-06-22T14:00:40,173 check.warn(importable) 2024-06-22T14:00:40,174 /tmp/pip-build-env-ye0gin6m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.mirtrace' is absent from the `packages` configuration. 2024-06-22T14:00:40,174 !! 2024-06-22T14:00:40,175 ******************************************************************************** 2024-06-22T14:00:40,175 ############################ 2024-06-22T14:00:40,176 # Package would be ignored # 2024-06-22T14:00:40,176 ############################ 2024-06-22T14:00:40,177 Python recognizes 'multiqc.modules.mirtrace' as an importable package[^1], 2024-06-22T14:00:40,177 but it is absent from setuptools' `packages` configuration. 2024-06-22T14:00:40,178 This leads to an ambiguous overall configuration. If you want to distribute this 2024-06-22T14:00:40,179 package, please make sure that 'multiqc.modules.mirtrace' is explicitly added 2024-06-22T14:00:40,179 to the `packages` configuration field. 2024-06-22T14:00:40,180 Alternatively, you can also rely on setuptools' discovery methods 2024-06-22T14:00:40,181 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-06-22T14:00:40,181 instead of `find_packages(...)`/`find:`). 2024-06-22T14:00:40,182 You can read more about "package discovery" on setuptools documentation page: 2024-06-22T14:00:40,183 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-06-22T14:00:40,184 If you don't want 'multiqc.modules.mirtrace' to be distributed and are 2024-06-22T14:00:40,185 already explicitly excluding 'multiqc.modules.mirtrace' via 2024-06-22T14:00:40,185 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-06-22T14:00:40,186 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-06-22T14:00:40,186 combination with a more fine grained `package-data` configuration. 2024-06-22T14:00:40,187 You can read more about "package data files" on setuptools documentation page: 2024-06-22T14:00:40,188 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-06-22T14:00:40,190 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-06-22T14:00:40,190 even if it does not contain any `.py` files. 2024-06-22T14:00:40,191 On the other hand, currently there is no concept of package data 2024-06-22T14:00:40,191 directory, all directories are treated like packages. 2024-06-22T14:00:40,192 ******************************************************************************** 2024-06-22T14:00:40,193 !! 2024-06-22T14:00:40,194 check.warn(importable) 2024-06-22T14:00:40,194 /tmp/pip-build-env-ye0gin6m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.mosdepth' is absent from the `packages` configuration. 2024-06-22T14:00:40,194 !! 2024-06-22T14:00:40,195 ******************************************************************************** 2024-06-22T14:00:40,196 ############################ 2024-06-22T14:00:40,196 # Package would be ignored # 2024-06-22T14:00:40,196 ############################ 2024-06-22T14:00:40,197 Python recognizes 'multiqc.modules.mosdepth' as an importable package[^1], 2024-06-22T14:00:40,197 but it is absent from setuptools' `packages` configuration. 2024-06-22T14:00:40,198 This leads to an ambiguous overall configuration. If you want to distribute this 2024-06-22T14:00:40,198 package, please make sure that 'multiqc.modules.mosdepth' is explicitly added 2024-06-22T14:00:40,199 to the `packages` configuration field. 2024-06-22T14:00:40,200 Alternatively, you can also rely on setuptools' discovery methods 2024-06-22T14:00:40,200 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-06-22T14:00:40,201 instead of `find_packages(...)`/`find:`). 2024-06-22T14:00:40,202 You can read more about "package discovery" on setuptools documentation page: 2024-06-22T14:00:40,203 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-06-22T14:00:40,203 If you don't want 'multiqc.modules.mosdepth' to be distributed and are 2024-06-22T14:00:40,204 already explicitly excluding 'multiqc.modules.mosdepth' via 2024-06-22T14:00:40,204 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-06-22T14:00:40,205 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-06-22T14:00:40,205 combination with a more fine grained `package-data` configuration. 2024-06-22T14:00:40,206 You can read more about "package data files" on setuptools documentation page: 2024-06-22T14:00:40,207 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-06-22T14:00:40,209 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-06-22T14:00:40,210 even if it does not contain any `.py` files. 2024-06-22T14:00:40,210 On the other hand, currently there is no concept of package data 2024-06-22T14:00:40,211 directory, all directories are treated like packages. 2024-06-22T14:00:40,211 ******************************************************************************** 2024-06-22T14:00:40,212 !! 2024-06-22T14:00:40,213 check.warn(importable) 2024-06-22T14:00:40,213 /tmp/pip-build-env-ye0gin6m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.motus' is absent from the `packages` configuration. 2024-06-22T14:00:40,214 !! 2024-06-22T14:00:40,215 ******************************************************************************** 2024-06-22T14:00:40,215 ############################ 2024-06-22T14:00:40,216 # Package would be ignored # 2024-06-22T14:00:40,216 ############################ 2024-06-22T14:00:40,217 Python recognizes 'multiqc.modules.motus' as an importable package[^1], 2024-06-22T14:00:40,217 but it is absent from setuptools' `packages` configuration. 2024-06-22T14:00:40,218 This leads to an ambiguous overall configuration. If you want to distribute this 2024-06-22T14:00:40,219 package, please make sure that 'multiqc.modules.motus' is explicitly added 2024-06-22T14:00:40,219 to the `packages` configuration field. 2024-06-22T14:00:40,220 Alternatively, you can also rely on setuptools' discovery methods 2024-06-22T14:00:40,221 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-06-22T14:00:40,222 instead of `find_packages(...)`/`find:`). 2024-06-22T14:00:40,223 You can read more about "package discovery" on setuptools documentation page: 2024-06-22T14:00:40,223 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-06-22T14:00:40,224 If you don't want 'multiqc.modules.motus' to be distributed and are 2024-06-22T14:00:40,224 already explicitly excluding 'multiqc.modules.motus' via 2024-06-22T14:00:40,225 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-06-22T14:00:40,225 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-06-22T14:00:40,226 combination with a more fine grained `package-data` configuration. 2024-06-22T14:00:40,226 You can read more about "package data files" on setuptools documentation page: 2024-06-22T14:00:40,227 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-06-22T14:00:40,228 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-06-22T14:00:40,229 even if it does not contain any `.py` files. 2024-06-22T14:00:40,229 On the other hand, currently there is no concept of package data 2024-06-22T14:00:40,230 directory, all directories are treated like packages. 2024-06-22T14:00:40,230 ******************************************************************************** 2024-06-22T14:00:40,231 !! 2024-06-22T14:00:40,232 check.warn(importable) 2024-06-22T14:00:40,232 /tmp/pip-build-env-ye0gin6m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.mtnucratio' is absent from the `packages` configuration. 2024-06-22T14:00:40,233 !! 2024-06-22T14:00:40,234 ******************************************************************************** 2024-06-22T14:00:40,234 ############################ 2024-06-22T14:00:40,235 # Package would be ignored # 2024-06-22T14:00:40,235 ############################ 2024-06-22T14:00:40,236 Python recognizes 'multiqc.modules.mtnucratio' as an importable package[^1], 2024-06-22T14:00:40,236 but it is absent from setuptools' `packages` configuration. 2024-06-22T14:00:40,237 This leads to an ambiguous overall configuration. If you want to distribute this 2024-06-22T14:00:40,238 package, please make sure that 'multiqc.modules.mtnucratio' is explicitly added 2024-06-22T14:00:40,238 to the `packages` configuration field. 2024-06-22T14:00:40,239 Alternatively, you can also rely on setuptools' discovery methods 2024-06-22T14:00:40,240 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-06-22T14:00:40,240 instead of `find_packages(...)`/`find:`). 2024-06-22T14:00:40,241 You can read more about "package discovery" on setuptools documentation page: 2024-06-22T14:00:40,242 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-06-22T14:00:40,243 If you don't want 'multiqc.modules.mtnucratio' to be distributed and are 2024-06-22T14:00:40,244 already explicitly excluding 'multiqc.modules.mtnucratio' via 2024-06-22T14:00:40,244 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-06-22T14:00:40,245 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-06-22T14:00:40,245 combination with a more fine grained `package-data` configuration. 2024-06-22T14:00:40,246 You can read more about "package data files" on setuptools documentation page: 2024-06-22T14:00:40,247 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-06-22T14:00:40,249 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-06-22T14:00:40,249 even if it does not contain any `.py` files. 2024-06-22T14:00:40,250 On the other hand, currently there is no concept of package data 2024-06-22T14:00:40,250 directory, all directories are treated like packages. 2024-06-22T14:00:40,250 ******************************************************************************** 2024-06-22T14:00:40,251 !! 2024-06-22T14:00:40,251 check.warn(importable) 2024-06-22T14:00:40,252 /tmp/pip-build-env-ye0gin6m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.multivcfanalyzer' is absent from the `packages` configuration. 2024-06-22T14:00:40,252 !! 2024-06-22T14:00:40,253 ******************************************************************************** 2024-06-22T14:00:40,253 ############################ 2024-06-22T14:00:40,254 # Package would be ignored # 2024-06-22T14:00:40,254 ############################ 2024-06-22T14:00:40,255 Python recognizes 'multiqc.modules.multivcfanalyzer' as an importable package[^1], 2024-06-22T14:00:40,255 but it is absent from setuptools' `packages` configuration. 2024-06-22T14:00:40,256 This leads to an ambiguous overall configuration. If you want to distribute this 2024-06-22T14:00:40,256 package, please make sure that 'multiqc.modules.multivcfanalyzer' is explicitly added 2024-06-22T14:00:40,256 to the `packages` configuration field. 2024-06-22T14:00:40,257 Alternatively, you can also rely on setuptools' discovery methods 2024-06-22T14:00:40,258 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-06-22T14:00:40,258 instead of `find_packages(...)`/`find:`). 2024-06-22T14:00:40,259 You can read more about "package discovery" on setuptools documentation page: 2024-06-22T14:00:40,260 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-06-22T14:00:40,261 If you don't want 'multiqc.modules.multivcfanalyzer' to be distributed and are 2024-06-22T14:00:40,262 already explicitly excluding 'multiqc.modules.multivcfanalyzer' via 2024-06-22T14:00:40,262 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-06-22T14:00:40,263 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-06-22T14:00:40,263 combination with a more fine grained `package-data` configuration. 2024-06-22T14:00:40,264 You can read more about "package data files" on setuptools documentation page: 2024-06-22T14:00:40,265 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-06-22T14:00:40,267 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-06-22T14:00:40,267 even if it does not contain any `.py` files. 2024-06-22T14:00:40,268 On the other hand, currently there is no concept of package data 2024-06-22T14:00:40,268 directory, all directories are treated like packages. 2024-06-22T14:00:40,269 ******************************************************************************** 2024-06-22T14:00:40,269 !! 2024-06-22T14:00:40,270 check.warn(importable) 2024-06-22T14:00:40,270 /tmp/pip-build-env-ye0gin6m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.nanostat' is absent from the `packages` configuration. 2024-06-22T14:00:40,271 !! 2024-06-22T14:00:40,272 ******************************************************************************** 2024-06-22T14:00:40,272 ############################ 2024-06-22T14:00:40,273 # Package would be ignored # 2024-06-22T14:00:40,273 ############################ 2024-06-22T14:00:40,274 Python recognizes 'multiqc.modules.nanostat' as an importable package[^1], 2024-06-22T14:00:40,275 but it is absent from setuptools' `packages` configuration. 2024-06-22T14:00:40,276 This leads to an ambiguous overall configuration. If you want to distribute this 2024-06-22T14:00:40,276 package, please make sure that 'multiqc.modules.nanostat' is explicitly added 2024-06-22T14:00:40,277 to the `packages` configuration field. 2024-06-22T14:00:40,278 Alternatively, you can also rely on setuptools' discovery methods 2024-06-22T14:00:40,278 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-06-22T14:00:40,278 instead of `find_packages(...)`/`find:`). 2024-06-22T14:00:40,279 You can read more about "package discovery" on setuptools documentation page: 2024-06-22T14:00:40,280 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-06-22T14:00:40,281 If you don't want 'multiqc.modules.nanostat' to be distributed and are 2024-06-22T14:00:40,281 already explicitly excluding 'multiqc.modules.nanostat' via 2024-06-22T14:00:40,281 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-06-22T14:00:40,282 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-06-22T14:00:40,282 combination with a more fine grained `package-data` configuration. 2024-06-22T14:00:40,283 You can read more about "package data files" on setuptools documentation page: 2024-06-22T14:00:40,284 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-06-22T14:00:40,285 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-06-22T14:00:40,286 even if it does not contain any `.py` files. 2024-06-22T14:00:40,286 On the other hand, currently there is no concept of package data 2024-06-22T14:00:40,286 directory, all directories are treated like packages. 2024-06-22T14:00:40,287 ******************************************************************************** 2024-06-22T14:00:40,288 !! 2024-06-22T14:00:40,288 check.warn(importable) 2024-06-22T14:00:40,289 /tmp/pip-build-env-ye0gin6m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.nextclade' is absent from the `packages` configuration. 2024-06-22T14:00:40,289 !! 2024-06-22T14:00:40,290 ******************************************************************************** 2024-06-22T14:00:40,291 ############################ 2024-06-22T14:00:40,291 # Package would be ignored # 2024-06-22T14:00:40,292 ############################ 2024-06-22T14:00:40,293 Python recognizes 'multiqc.modules.nextclade' as an importable package[^1], 2024-06-22T14:00:40,293 but it is absent from setuptools' `packages` configuration. 2024-06-22T14:00:40,294 This leads to an ambiguous overall configuration. If you want to distribute this 2024-06-22T14:00:40,294 package, please make sure that 'multiqc.modules.nextclade' is explicitly added 2024-06-22T14:00:40,295 to the `packages` configuration field. 2024-06-22T14:00:40,296 Alternatively, you can also rely on setuptools' discovery methods 2024-06-22T14:00:40,296 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-06-22T14:00:40,297 instead of `find_packages(...)`/`find:`). 2024-06-22T14:00:40,298 You can read more about "package discovery" on setuptools documentation page: 2024-06-22T14:00:40,299 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-06-22T14:00:40,300 If you don't want 'multiqc.modules.nextclade' to be distributed and are 2024-06-22T14:00:40,300 already explicitly excluding 'multiqc.modules.nextclade' via 2024-06-22T14:00:40,301 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-06-22T14:00:40,302 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-06-22T14:00:40,302 combination with a more fine grained `package-data` configuration. 2024-06-22T14:00:40,303 You can read more about "package data files" on setuptools documentation page: 2024-06-22T14:00:40,304 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-06-22T14:00:40,305 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-06-22T14:00:40,305 even if it does not contain any `.py` files. 2024-06-22T14:00:40,305 On the other hand, currently there is no concept of package data 2024-06-22T14:00:40,306 directory, all directories are treated like packages. 2024-06-22T14:00:40,306 ******************************************************************************** 2024-06-22T14:00:40,307 !! 2024-06-22T14:00:40,307 check.warn(importable) 2024-06-22T14:00:40,307 /tmp/pip-build-env-ye0gin6m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.ngsderive' is absent from the `packages` configuration. 2024-06-22T14:00:40,308 !! 2024-06-22T14:00:40,309 ******************************************************************************** 2024-06-22T14:00:40,309 ############################ 2024-06-22T14:00:40,310 # Package would be ignored # 2024-06-22T14:00:40,310 ############################ 2024-06-22T14:00:40,310 Python recognizes 'multiqc.modules.ngsderive' as an importable package[^1], 2024-06-22T14:00:40,311 but it is absent from setuptools' `packages` configuration. 2024-06-22T14:00:40,312 This leads to an ambiguous overall configuration. If you want to distribute this 2024-06-22T14:00:40,312 package, please make sure that 'multiqc.modules.ngsderive' is explicitly added 2024-06-22T14:00:40,313 to the `packages` configuration field. 2024-06-22T14:00:40,314 Alternatively, you can also rely on setuptools' discovery methods 2024-06-22T14:00:40,314 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-06-22T14:00:40,315 instead of `find_packages(...)`/`find:`). 2024-06-22T14:00:40,316 You can read more about "package discovery" on setuptools documentation page: 2024-06-22T14:00:40,317 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-06-22T14:00:40,318 If you don't want 'multiqc.modules.ngsderive' to be distributed and are 2024-06-22T14:00:40,318 already explicitly excluding 'multiqc.modules.ngsderive' via 2024-06-22T14:00:40,319 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-06-22T14:00:40,319 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-06-22T14:00:40,320 combination with a more fine grained `package-data` configuration. 2024-06-22T14:00:40,321 You can read more about "package data files" on setuptools documentation page: 2024-06-22T14:00:40,322 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-06-22T14:00:40,323 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-06-22T14:00:40,324 even if it does not contain any `.py` files. 2024-06-22T14:00:40,324 On the other hand, currently there is no concept of package data 2024-06-22T14:00:40,325 directory, all directories are treated like packages. 2024-06-22T14:00:40,325 ******************************************************************************** 2024-06-22T14:00:40,326 !! 2024-06-22T14:00:40,327 check.warn(importable) 2024-06-22T14:00:40,327 /tmp/pip-build-env-ye0gin6m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.nonpareil' is absent from the `packages` configuration. 2024-06-22T14:00:40,328 !! 2024-06-22T14:00:40,329 ******************************************************************************** 2024-06-22T14:00:40,329 ############################ 2024-06-22T14:00:40,330 # Package would be ignored # 2024-06-22T14:00:40,330 ############################ 2024-06-22T14:00:40,330 Python recognizes 'multiqc.modules.nonpareil' as an importable package[^1], 2024-06-22T14:00:40,331 but it is absent from setuptools' `packages` configuration. 2024-06-22T14:00:40,331 This leads to an ambiguous overall configuration. If you want to distribute this 2024-06-22T14:00:40,332 package, please make sure that 'multiqc.modules.nonpareil' is explicitly added 2024-06-22T14:00:40,332 to the `packages` configuration field. 2024-06-22T14:00:40,333 Alternatively, you can also rely on setuptools' discovery methods 2024-06-22T14:00:40,333 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-06-22T14:00:40,334 instead of `find_packages(...)`/`find:`). 2024-06-22T14:00:40,334 You can read more about "package discovery" on setuptools documentation page: 2024-06-22T14:00:40,335 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-06-22T14:00:40,336 If you don't want 'multiqc.modules.nonpareil' to be distributed and are 2024-06-22T14:00:40,336 already explicitly excluding 'multiqc.modules.nonpareil' via 2024-06-22T14:00:40,336 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-06-22T14:00:40,337 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-06-22T14:00:40,337 combination with a more fine grained `package-data` configuration. 2024-06-22T14:00:40,338 You can read more about "package data files" on setuptools documentation page: 2024-06-22T14:00:40,340 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-06-22T14:00:40,341 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-06-22T14:00:40,342 even if it does not contain any `.py` files. 2024-06-22T14:00:40,342 On the other hand, currently there is no concept of package data 2024-06-22T14:00:40,343 directory, all directories are treated like packages. 2024-06-22T14:00:40,343 ******************************************************************************** 2024-06-22T14:00:40,344 !! 2024-06-22T14:00:40,345 check.warn(importable) 2024-06-22T14:00:40,345 /tmp/pip-build-env-ye0gin6m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.odgi' is absent from the `packages` configuration. 2024-06-22T14:00:40,346 !! 2024-06-22T14:00:40,347 ******************************************************************************** 2024-06-22T14:00:40,347 ############################ 2024-06-22T14:00:40,348 # Package would be ignored # 2024-06-22T14:00:40,348 ############################ 2024-06-22T14:00:40,349 Python recognizes 'multiqc.modules.odgi' as an importable package[^1], 2024-06-22T14:00:40,350 but it is absent from setuptools' `packages` configuration. 2024-06-22T14:00:40,350 This leads to an ambiguous overall configuration. If you want to distribute this 2024-06-22T14:00:40,351 package, please make sure that 'multiqc.modules.odgi' is explicitly added 2024-06-22T14:00:40,352 to the `packages` configuration field. 2024-06-22T14:00:40,353 Alternatively, you can also rely on setuptools' discovery methods 2024-06-22T14:00:40,353 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-06-22T14:00:40,354 instead of `find_packages(...)`/`find:`). 2024-06-22T14:00:40,355 You can read more about "package discovery" on setuptools documentation page: 2024-06-22T14:00:40,356 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-06-22T14:00:40,357 If you don't want 'multiqc.modules.odgi' to be distributed and are 2024-06-22T14:00:40,357 already explicitly excluding 'multiqc.modules.odgi' via 2024-06-22T14:00:40,357 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-06-22T14:00:40,358 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-06-22T14:00:40,358 combination with a more fine grained `package-data` configuration. 2024-06-22T14:00:40,359 You can read more about "package data files" on setuptools documentation page: 2024-06-22T14:00:40,359 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-06-22T14:00:40,360 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-06-22T14:00:40,361 even if it does not contain any `.py` files. 2024-06-22T14:00:40,361 On the other hand, currently there is no concept of package data 2024-06-22T14:00:40,362 directory, all directories are treated like packages. 2024-06-22T14:00:40,362 ******************************************************************************** 2024-06-22T14:00:40,363 !! 2024-06-22T14:00:40,363 check.warn(importable) 2024-06-22T14:00:40,364 /tmp/pip-build-env-ye0gin6m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.optitype' is absent from the `packages` configuration. 2024-06-22T14:00:40,364 !! 2024-06-22T14:00:40,365 ******************************************************************************** 2024-06-22T14:00:40,365 ############################ 2024-06-22T14:00:40,366 # Package would be ignored # 2024-06-22T14:00:40,367 ############################ 2024-06-22T14:00:40,367 Python recognizes 'multiqc.modules.optitype' as an importable package[^1], 2024-06-22T14:00:40,367 but it is absent from setuptools' `packages` configuration. 2024-06-22T14:00:40,368 This leads to an ambiguous overall configuration. If you want to distribute this 2024-06-22T14:00:40,369 package, please make sure that 'multiqc.modules.optitype' is explicitly added 2024-06-22T14:00:40,369 to the `packages` configuration field. 2024-06-22T14:00:40,370 Alternatively, you can also rely on setuptools' discovery methods 2024-06-22T14:00:40,371 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-06-22T14:00:40,371 instead of `find_packages(...)`/`find:`). 2024-06-22T14:00:40,372 You can read more about "package discovery" on setuptools documentation page: 2024-06-22T14:00:40,373 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-06-22T14:00:40,374 If you don't want 'multiqc.modules.optitype' to be distributed and are 2024-06-22T14:00:40,375 already explicitly excluding 'multiqc.modules.optitype' via 2024-06-22T14:00:40,375 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-06-22T14:00:40,376 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-06-22T14:00:40,376 combination with a more fine grained `package-data` configuration. 2024-06-22T14:00:40,377 You can read more about "package data files" on setuptools documentation page: 2024-06-22T14:00:40,378 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-06-22T14:00:40,380 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-06-22T14:00:40,380 even if it does not contain any `.py` files. 2024-06-22T14:00:40,381 On the other hand, currently there is no concept of package data 2024-06-22T14:00:40,381 directory, all directories are treated like packages. 2024-06-22T14:00:40,382 ******************************************************************************** 2024-06-22T14:00:40,383 !! 2024-06-22T14:00:40,383 check.warn(importable) 2024-06-22T14:00:40,383 /tmp/pip-build-env-ye0gin6m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.pangolin' is absent from the `packages` configuration. 2024-06-22T14:00:40,384 !! 2024-06-22T14:00:40,384 ******************************************************************************** 2024-06-22T14:00:40,385 ############################ 2024-06-22T14:00:40,385 # Package would be ignored # 2024-06-22T14:00:40,385 ############################ 2024-06-22T14:00:40,386 Python recognizes 'multiqc.modules.pangolin' as an importable package[^1], 2024-06-22T14:00:40,386 but it is absent from setuptools' `packages` configuration. 2024-06-22T14:00:40,387 This leads to an ambiguous overall configuration. If you want to distribute this 2024-06-22T14:00:40,387 package, please make sure that 'multiqc.modules.pangolin' is explicitly added 2024-06-22T14:00:40,388 to the `packages` configuration field. 2024-06-22T14:00:40,388 Alternatively, you can also rely on setuptools' discovery methods 2024-06-22T14:00:40,389 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-06-22T14:00:40,389 instead of `find_packages(...)`/`find:`). 2024-06-22T14:00:40,390 You can read more about "package discovery" on setuptools documentation page: 2024-06-22T14:00:40,391 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-06-22T14:00:40,392 If you don't want 'multiqc.modules.pangolin' to be distributed and are 2024-06-22T14:00:40,392 already explicitly excluding 'multiqc.modules.pangolin' via 2024-06-22T14:00:40,393 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-06-22T14:00:40,394 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-06-22T14:00:40,394 combination with a more fine grained `package-data` configuration. 2024-06-22T14:00:40,395 You can read more about "package data files" on setuptools documentation page: 2024-06-22T14:00:40,396 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-06-22T14:00:40,397 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-06-22T14:00:40,398 even if it does not contain any `.py` files. 2024-06-22T14:00:40,398 On the other hand, currently there is no concept of package data 2024-06-22T14:00:40,399 directory, all directories are treated like packages. 2024-06-22T14:00:40,399 ******************************************************************************** 2024-06-22T14:00:40,400 !! 2024-06-22T14:00:40,401 check.warn(importable) 2024-06-22T14:00:40,401 /tmp/pip-build-env-ye0gin6m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.pbmarkdup' is absent from the `packages` configuration. 2024-06-22T14:00:40,402 !! 2024-06-22T14:00:40,403 ******************************************************************************** 2024-06-22T14:00:40,403 ############################ 2024-06-22T14:00:40,404 # Package would be ignored # 2024-06-22T14:00:40,404 ############################ 2024-06-22T14:00:40,405 Python recognizes 'multiqc.modules.pbmarkdup' as an importable package[^1], 2024-06-22T14:00:40,405 but it is absent from setuptools' `packages` configuration. 2024-06-22T14:00:40,407 This leads to an ambiguous overall configuration. If you want to distribute this 2024-06-22T14:00:40,407 package, please make sure that 'multiqc.modules.pbmarkdup' is explicitly added 2024-06-22T14:00:40,408 to the `packages` configuration field. 2024-06-22T14:00:40,409 Alternatively, you can also rely on setuptools' discovery methods 2024-06-22T14:00:40,409 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-06-22T14:00:40,409 instead of `find_packages(...)`/`find:`). 2024-06-22T14:00:40,410 You can read more about "package discovery" on setuptools documentation page: 2024-06-22T14:00:40,411 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-06-22T14:00:40,411 If you don't want 'multiqc.modules.pbmarkdup' to be distributed and are 2024-06-22T14:00:40,412 already explicitly excluding 'multiqc.modules.pbmarkdup' via 2024-06-22T14:00:40,412 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-06-22T14:00:40,412 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-06-22T14:00:40,413 combination with a more fine grained `package-data` configuration. 2024-06-22T14:00:40,413 You can read more about "package data files" on setuptools documentation page: 2024-06-22T14:00:40,414 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-06-22T14:00:40,415 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-06-22T14:00:40,416 even if it does not contain any `.py` files. 2024-06-22T14:00:40,416 On the other hand, currently there is no concept of package data 2024-06-22T14:00:40,416 directory, all directories are treated like packages. 2024-06-22T14:00:40,417 ******************************************************************************** 2024-06-22T14:00:40,418 !! 2024-06-22T14:00:40,418 check.warn(importable) 2024-06-22T14:00:40,419 /tmp/pip-build-env-ye0gin6m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.peddy' is absent from the `packages` configuration. 2024-06-22T14:00:40,419 !! 2024-06-22T14:00:40,420 ******************************************************************************** 2024-06-22T14:00:40,421 ############################ 2024-06-22T14:00:40,422 # Package would be ignored # 2024-06-22T14:00:40,422 ############################ 2024-06-22T14:00:40,423 Python recognizes 'multiqc.modules.peddy' as an importable package[^1], 2024-06-22T14:00:40,423 but it is absent from setuptools' `packages` configuration. 2024-06-22T14:00:40,424 This leads to an ambiguous overall configuration. If you want to distribute this 2024-06-22T14:00:40,425 package, please make sure that 'multiqc.modules.peddy' is explicitly added 2024-06-22T14:00:40,425 to the `packages` configuration field. 2024-06-22T14:00:40,426 Alternatively, you can also rely on setuptools' discovery methods 2024-06-22T14:00:40,427 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-06-22T14:00:40,427 instead of `find_packages(...)`/`find:`). 2024-06-22T14:00:40,428 You can read more about "package discovery" on setuptools documentation page: 2024-06-22T14:00:40,429 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-06-22T14:00:40,430 If you don't want 'multiqc.modules.peddy' to be distributed and are 2024-06-22T14:00:40,431 already explicitly excluding 'multiqc.modules.peddy' via 2024-06-22T14:00:40,431 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-06-22T14:00:40,432 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-06-22T14:00:40,432 combination with a more fine grained `package-data` configuration. 2024-06-22T14:00:40,434 You can read more about "package data files" on setuptools documentation page: 2024-06-22T14:00:40,435 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-06-22T14:00:40,437 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-06-22T14:00:40,437 even if it does not contain any `.py` files. 2024-06-22T14:00:40,437 On the other hand, currently there is no concept of package data 2024-06-22T14:00:40,438 directory, all directories are treated like packages. 2024-06-22T14:00:40,438 ******************************************************************************** 2024-06-22T14:00:40,439 !! 2024-06-22T14:00:40,439 check.warn(importable) 2024-06-22T14:00:40,439 /tmp/pip-build-env-ye0gin6m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.phantompeakqualtools' is absent from the `packages` configuration. 2024-06-22T14:00:40,440 !! 2024-06-22T14:00:40,441 ******************************************************************************** 2024-06-22T14:00:40,441 ############################ 2024-06-22T14:00:40,441 # Package would be ignored # 2024-06-22T14:00:40,442 ############################ 2024-06-22T14:00:40,443 Python recognizes 'multiqc.modules.phantompeakqualtools' as an importable package[^1], 2024-06-22T14:00:40,443 but it is absent from setuptools' `packages` configuration. 2024-06-22T14:00:40,444 This leads to an ambiguous overall configuration. If you want to distribute this 2024-06-22T14:00:40,444 package, please make sure that 'multiqc.modules.phantompeakqualtools' is explicitly added 2024-06-22T14:00:40,445 to the `packages` configuration field. 2024-06-22T14:00:40,446 Alternatively, you can also rely on setuptools' discovery methods 2024-06-22T14:00:40,446 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-06-22T14:00:40,447 instead of `find_packages(...)`/`find:`). 2024-06-22T14:00:40,448 You can read more about "package discovery" on setuptools documentation page: 2024-06-22T14:00:40,449 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-06-22T14:00:40,450 If you don't want 'multiqc.modules.phantompeakqualtools' to be distributed and are 2024-06-22T14:00:40,451 already explicitly excluding 'multiqc.modules.phantompeakqualtools' via 2024-06-22T14:00:40,451 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-06-22T14:00:40,452 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-06-22T14:00:40,452 combination with a more fine grained `package-data` configuration. 2024-06-22T14:00:40,453 You can read more about "package data files" on setuptools documentation page: 2024-06-22T14:00:40,454 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-06-22T14:00:40,455 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-06-22T14:00:40,456 even if it does not contain any `.py` files. 2024-06-22T14:00:40,456 On the other hand, currently there is no concept of package data 2024-06-22T14:00:40,457 directory, all directories are treated like packages. 2024-06-22T14:00:40,457 ******************************************************************************** 2024-06-22T14:00:40,458 !! 2024-06-22T14:00:40,459 check.warn(importable) 2024-06-22T14:00:40,459 /tmp/pip-build-env-ye0gin6m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.picard' is absent from the `packages` configuration. 2024-06-22T14:00:40,460 !! 2024-06-22T14:00:40,461 ******************************************************************************** 2024-06-22T14:00:40,462 ############################ 2024-06-22T14:00:40,462 # Package would be ignored # 2024-06-22T14:00:40,463 ############################ 2024-06-22T14:00:40,463 Python recognizes 'multiqc.modules.picard' as an importable package[^1], 2024-06-22T14:00:40,463 but it is absent from setuptools' `packages` configuration. 2024-06-22T14:00:40,464 This leads to an ambiguous overall configuration. If you want to distribute this 2024-06-22T14:00:40,464 package, please make sure that 'multiqc.modules.picard' is explicitly added 2024-06-22T14:00:40,465 to the `packages` configuration field. 2024-06-22T14:00:40,465 Alternatively, you can also rely on setuptools' discovery methods 2024-06-22T14:00:40,466 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-06-22T14:00:40,466 instead of `find_packages(...)`/`find:`). 2024-06-22T14:00:40,467 You can read more about "package discovery" on setuptools documentation page: 2024-06-22T14:00:40,467 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-06-22T14:00:40,468 If you don't want 'multiqc.modules.picard' to be distributed and are 2024-06-22T14:00:40,469 already explicitly excluding 'multiqc.modules.picard' via 2024-06-22T14:00:40,469 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-06-22T14:00:40,470 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-06-22T14:00:40,470 combination with a more fine grained `package-data` configuration. 2024-06-22T14:00:40,471 You can read more about "package data files" on setuptools documentation page: 2024-06-22T14:00:40,472 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-06-22T14:00:40,473 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-06-22T14:00:40,474 even if it does not contain any `.py` files. 2024-06-22T14:00:40,474 On the other hand, currently there is no concept of package data 2024-06-22T14:00:40,475 directory, all directories are treated like packages. 2024-06-22T14:00:40,475 ******************************************************************************** 2024-06-22T14:00:40,476 !! 2024-06-22T14:00:40,477 check.warn(importable) 2024-06-22T14:00:40,477 /tmp/pip-build-env-ye0gin6m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.picard.tests' is absent from the `packages` configuration. 2024-06-22T14:00:40,478 !! 2024-06-22T14:00:40,479 ******************************************************************************** 2024-06-22T14:00:40,480 ############################ 2024-06-22T14:00:40,480 # Package would be ignored # 2024-06-22T14:00:40,480 ############################ 2024-06-22T14:00:40,481 Python recognizes 'multiqc.modules.picard.tests' as an importable package[^1], 2024-06-22T14:00:40,481 but it is absent from setuptools' `packages` configuration. 2024-06-22T14:00:40,482 This leads to an ambiguous overall configuration. If you want to distribute this 2024-06-22T14:00:40,483 package, please make sure that 'multiqc.modules.picard.tests' is explicitly added 2024-06-22T14:00:40,483 to the `packages` configuration field. 2024-06-22T14:00:40,484 Alternatively, you can also rely on setuptools' discovery methods 2024-06-22T14:00:40,485 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-06-22T14:00:40,485 instead of `find_packages(...)`/`find:`). 2024-06-22T14:00:40,486 You can read more about "package discovery" on setuptools documentation page: 2024-06-22T14:00:40,487 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-06-22T14:00:40,489 If you don't want 'multiqc.modules.picard.tests' to be distributed and are 2024-06-22T14:00:40,489 already explicitly excluding 'multiqc.modules.picard.tests' via 2024-06-22T14:00:40,489 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-06-22T14:00:40,490 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-06-22T14:00:40,490 combination with a more fine grained `package-data` configuration. 2024-06-22T14:00:40,491 You can read more about "package data files" on setuptools documentation page: 2024-06-22T14:00:40,491 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-06-22T14:00:40,492 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-06-22T14:00:40,493 even if it does not contain any `.py` files. 2024-06-22T14:00:40,493 On the other hand, currently there is no concept of package data 2024-06-22T14:00:40,494 directory, all directories are treated like packages. 2024-06-22T14:00:40,494 ******************************************************************************** 2024-06-22T14:00:40,495 !! 2024-06-22T14:00:40,496 check.warn(importable) 2024-06-22T14:00:40,496 /tmp/pip-build-env-ye0gin6m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.porechop' is absent from the `packages` configuration. 2024-06-22T14:00:40,497 !! 2024-06-22T14:00:40,498 ******************************************************************************** 2024-06-22T14:00:40,498 ############################ 2024-06-22T14:00:40,499 # Package would be ignored # 2024-06-22T14:00:40,499 ############################ 2024-06-22T14:00:40,500 Python recognizes 'multiqc.modules.porechop' as an importable package[^1], 2024-06-22T14:00:40,500 but it is absent from setuptools' `packages` configuration. 2024-06-22T14:00:40,501 This leads to an ambiguous overall configuration. If you want to distribute this 2024-06-22T14:00:40,502 package, please make sure that 'multiqc.modules.porechop' is explicitly added 2024-06-22T14:00:40,502 to the `packages` configuration field. 2024-06-22T14:00:40,503 Alternatively, you can also rely on setuptools' discovery methods 2024-06-22T14:00:40,504 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-06-22T14:00:40,504 instead of `find_packages(...)`/`find:`). 2024-06-22T14:00:40,505 You can read more about "package discovery" on setuptools documentation page: 2024-06-22T14:00:40,506 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-06-22T14:00:40,507 If you don't want 'multiqc.modules.porechop' to be distributed and are 2024-06-22T14:00:40,508 already explicitly excluding 'multiqc.modules.porechop' via 2024-06-22T14:00:40,508 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-06-22T14:00:40,509 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-06-22T14:00:40,509 combination with a more fine grained `package-data` configuration. 2024-06-22T14:00:40,510 You can read more about "package data files" on setuptools documentation page: 2024-06-22T14:00:40,511 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-06-22T14:00:40,513 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-06-22T14:00:40,513 even if it does not contain any `.py` files. 2024-06-22T14:00:40,514 On the other hand, currently there is no concept of package data 2024-06-22T14:00:40,514 directory, all directories are treated like packages. 2024-06-22T14:00:40,515 ******************************************************************************** 2024-06-22T14:00:40,517 !! 2024-06-22T14:00:40,517 check.warn(importable) 2024-06-22T14:00:40,517 /tmp/pip-build-env-ye0gin6m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.preseq' is absent from the `packages` configuration. 2024-06-22T14:00:40,518 !! 2024-06-22T14:00:40,518 ******************************************************************************** 2024-06-22T14:00:40,519 ############################ 2024-06-22T14:00:40,519 # Package would be ignored # 2024-06-22T14:00:40,519 ############################ 2024-06-22T14:00:40,520 Python recognizes 'multiqc.modules.preseq' as an importable package[^1], 2024-06-22T14:00:40,520 but it is absent from setuptools' `packages` configuration. 2024-06-22T14:00:40,521 This leads to an ambiguous overall configuration. If you want to distribute this 2024-06-22T14:00:40,521 package, please make sure that 'multiqc.modules.preseq' is explicitly added 2024-06-22T14:00:40,522 to the `packages` configuration field. 2024-06-22T14:00:40,522 Alternatively, you can also rely on setuptools' discovery methods 2024-06-22T14:00:40,523 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-06-22T14:00:40,523 instead of `find_packages(...)`/`find:`). 2024-06-22T14:00:40,524 You can read more about "package discovery" on setuptools documentation page: 2024-06-22T14:00:40,525 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-06-22T14:00:40,526 If you don't want 'multiqc.modules.preseq' to be distributed and are 2024-06-22T14:00:40,526 already explicitly excluding 'multiqc.modules.preseq' via 2024-06-22T14:00:40,527 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-06-22T14:00:40,527 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-06-22T14:00:40,528 combination with a more fine grained `package-data` configuration. 2024-06-22T14:00:40,529 You can read more about "package data files" on setuptools documentation page: 2024-06-22T14:00:40,530 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-06-22T14:00:40,531 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-06-22T14:00:40,532 even if it does not contain any `.py` files. 2024-06-22T14:00:40,532 On the other hand, currently there is no concept of package data 2024-06-22T14:00:40,533 directory, all directories are treated like packages. 2024-06-22T14:00:40,533 ******************************************************************************** 2024-06-22T14:00:40,534 !! 2024-06-22T14:00:40,534 check.warn(importable) 2024-06-22T14:00:40,535 /tmp/pip-build-env-ye0gin6m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.prinseqplusplus' is absent from the `packages` configuration. 2024-06-22T14:00:40,535 !! 2024-06-22T14:00:40,536 ******************************************************************************** 2024-06-22T14:00:40,537 ############################ 2024-06-22T14:00:40,537 # Package would be ignored # 2024-06-22T14:00:40,538 ############################ 2024-06-22T14:00:40,538 Python recognizes 'multiqc.modules.prinseqplusplus' as an importable package[^1], 2024-06-22T14:00:40,539 but it is absent from setuptools' `packages` configuration. 2024-06-22T14:00:40,540 This leads to an ambiguous overall configuration. If you want to distribute this 2024-06-22T14:00:40,540 package, please make sure that 'multiqc.modules.prinseqplusplus' is explicitly added 2024-06-22T14:00:40,541 to the `packages` configuration field. 2024-06-22T14:00:40,542 Alternatively, you can also rely on setuptools' discovery methods 2024-06-22T14:00:40,543 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-06-22T14:00:40,543 instead of `find_packages(...)`/`find:`). 2024-06-22T14:00:40,544 You can read more about "package discovery" on setuptools documentation page: 2024-06-22T14:00:40,544 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-06-22T14:00:40,545 If you don't want 'multiqc.modules.prinseqplusplus' to be distributed and are 2024-06-22T14:00:40,545 already explicitly excluding 'multiqc.modules.prinseqplusplus' via 2024-06-22T14:00:40,546 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-06-22T14:00:40,546 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-06-22T14:00:40,546 combination with a more fine grained `package-data` configuration. 2024-06-22T14:00:40,547 You can read more about "package data files" on setuptools documentation page: 2024-06-22T14:00:40,548 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-06-22T14:00:40,549 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-06-22T14:00:40,549 even if it does not contain any `.py` files. 2024-06-22T14:00:40,550 On the other hand, currently there is no concept of package data 2024-06-22T14:00:40,550 directory, all directories are treated like packages. 2024-06-22T14:00:40,550 ******************************************************************************** 2024-06-22T14:00:40,551 !! 2024-06-22T14:00:40,552 check.warn(importable) 2024-06-22T14:00:40,552 /tmp/pip-build-env-ye0gin6m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.prokka' is absent from the `packages` configuration. 2024-06-22T14:00:40,553 !! 2024-06-22T14:00:40,553 ******************************************************************************** 2024-06-22T14:00:40,554 ############################ 2024-06-22T14:00:40,554 # Package would be ignored # 2024-06-22T14:00:40,555 ############################ 2024-06-22T14:00:40,555 Python recognizes 'multiqc.modules.prokka' as an importable package[^1], 2024-06-22T14:00:40,556 but it is absent from setuptools' `packages` configuration. 2024-06-22T14:00:40,557 This leads to an ambiguous overall configuration. If you want to distribute this 2024-06-22T14:00:40,557 package, please make sure that 'multiqc.modules.prokka' is explicitly added 2024-06-22T14:00:40,558 to the `packages` configuration field. 2024-06-22T14:00:40,559 Alternatively, you can also rely on setuptools' discovery methods 2024-06-22T14:00:40,559 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-06-22T14:00:40,560 instead of `find_packages(...)`/`find:`). 2024-06-22T14:00:40,561 You can read more about "package discovery" on setuptools documentation page: 2024-06-22T14:00:40,562 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-06-22T14:00:40,563 If you don't want 'multiqc.modules.prokka' to be distributed and are 2024-06-22T14:00:40,563 already explicitly excluding 'multiqc.modules.prokka' via 2024-06-22T14:00:40,564 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-06-22T14:00:40,564 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-06-22T14:00:40,564 combination with a more fine grained `package-data` configuration. 2024-06-22T14:00:40,565 You can read more about "package data files" on setuptools documentation page: 2024-06-22T14:00:40,568 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-06-22T14:00:40,570 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-06-22T14:00:40,570 even if it does not contain any `.py` files. 2024-06-22T14:00:40,570 On the other hand, currently there is no concept of package data 2024-06-22T14:00:40,571 directory, all directories are treated like packages. 2024-06-22T14:00:40,571 ******************************************************************************** 2024-06-22T14:00:40,572 !! 2024-06-22T14:00:40,572 check.warn(importable) 2024-06-22T14:00:40,573 /tmp/pip-build-env-ye0gin6m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.purple' is absent from the `packages` configuration. 2024-06-22T14:00:40,573 !! 2024-06-22T14:00:40,574 ******************************************************************************** 2024-06-22T14:00:40,574 ############################ 2024-06-22T14:00:40,574 # Package would be ignored # 2024-06-22T14:00:40,575 ############################ 2024-06-22T14:00:40,575 Python recognizes 'multiqc.modules.purple' as an importable package[^1], 2024-06-22T14:00:40,575 but it is absent from setuptools' `packages` configuration. 2024-06-22T14:00:40,576 This leads to an ambiguous overall configuration. If you want to distribute this 2024-06-22T14:00:40,577 package, please make sure that 'multiqc.modules.purple' is explicitly added 2024-06-22T14:00:40,577 to the `packages` configuration field. 2024-06-22T14:00:40,578 Alternatively, you can also rely on setuptools' discovery methods 2024-06-22T14:00:40,578 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-06-22T14:00:40,579 instead of `find_packages(...)`/`find:`). 2024-06-22T14:00:40,580 You can read more about "package discovery" on setuptools documentation page: 2024-06-22T14:00:40,581 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-06-22T14:00:40,582 If you don't want 'multiqc.modules.purple' to be distributed and are 2024-06-22T14:00:40,583 already explicitly excluding 'multiqc.modules.purple' via 2024-06-22T14:00:40,583 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-06-22T14:00:40,584 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-06-22T14:00:40,584 combination with a more fine grained `package-data` configuration. 2024-06-22T14:00:40,585 You can read more about "package data files" on setuptools documentation page: 2024-06-22T14:00:40,586 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-06-22T14:00:40,588 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-06-22T14:00:40,588 even if it does not contain any `.py` files. 2024-06-22T14:00:40,589 On the other hand, currently there is no concept of package data 2024-06-22T14:00:40,589 directory, all directories are treated like packages. 2024-06-22T14:00:40,589 ******************************************************************************** 2024-06-22T14:00:40,590 !! 2024-06-22T14:00:40,591 check.warn(importable) 2024-06-22T14:00:40,591 /tmp/pip-build-env-ye0gin6m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.pychopper' is absent from the `packages` configuration. 2024-06-22T14:00:40,592 !! 2024-06-22T14:00:40,593 ******************************************************************************** 2024-06-22T14:00:40,593 ############################ 2024-06-22T14:00:40,594 # Package would be ignored # 2024-06-22T14:00:40,594 ############################ 2024-06-22T14:00:40,595 Python recognizes 'multiqc.modules.pychopper' as an importable package[^1], 2024-06-22T14:00:40,595 but it is absent from setuptools' `packages` configuration. 2024-06-22T14:00:40,597 This leads to an ambiguous overall configuration. If you want to distribute this 2024-06-22T14:00:40,597 package, please make sure that 'multiqc.modules.pychopper' is explicitly added 2024-06-22T14:00:40,597 to the `packages` configuration field. 2024-06-22T14:00:40,598 Alternatively, you can also rely on setuptools' discovery methods 2024-06-22T14:00:40,598 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-06-22T14:00:40,599 instead of `find_packages(...)`/`find:`). 2024-06-22T14:00:40,599 You can read more about "package discovery" on setuptools documentation page: 2024-06-22T14:00:40,600 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-06-22T14:00:40,601 If you don't want 'multiqc.modules.pychopper' to be distributed and are 2024-06-22T14:00:40,601 already explicitly excluding 'multiqc.modules.pychopper' via 2024-06-22T14:00:40,602 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-06-22T14:00:40,602 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-06-22T14:00:40,602 combination with a more fine grained `package-data` configuration. 2024-06-22T14:00:40,603 You can read more about "package data files" on setuptools documentation page: 2024-06-22T14:00:40,604 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-06-22T14:00:40,606 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-06-22T14:00:40,607 even if it does not contain any `.py` files. 2024-06-22T14:00:40,651 On the other hand, currently there is no concept of package data 2024-06-22T14:00:40,651 directory, all directories are treated like packages. 2024-06-22T14:00:40,652 ******************************************************************************** 2024-06-22T14:00:40,653 !! 2024-06-22T14:00:40,654 check.warn(importable) 2024-06-22T14:00:40,654 /tmp/pip-build-env-ye0gin6m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.pycoqc' is absent from the `packages` configuration. 2024-06-22T14:00:40,655 !! 2024-06-22T14:00:40,656 ******************************************************************************** 2024-06-22T14:00:40,656 ############################ 2024-06-22T14:00:40,657 # Package would be ignored # 2024-06-22T14:00:40,657 ############################ 2024-06-22T14:00:40,658 Python recognizes 'multiqc.modules.pycoqc' as an importable package[^1], 2024-06-22T14:00:40,658 but it is absent from setuptools' `packages` configuration. 2024-06-22T14:00:40,659 This leads to an ambiguous overall configuration. If you want to distribute this 2024-06-22T14:00:40,660 package, please make sure that 'multiqc.modules.pycoqc' is explicitly added 2024-06-22T14:00:40,660 to the `packages` configuration field. 2024-06-22T14:00:40,661 Alternatively, you can also rely on setuptools' discovery methods 2024-06-22T14:00:40,661 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-06-22T14:00:40,662 instead of `find_packages(...)`/`find:`). 2024-06-22T14:00:40,663 You can read more about "package discovery" on setuptools documentation page: 2024-06-22T14:00:40,664 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-06-22T14:00:40,665 If you don't want 'multiqc.modules.pycoqc' to be distributed and are 2024-06-22T14:00:40,665 already explicitly excluding 'multiqc.modules.pycoqc' via 2024-06-22T14:00:40,666 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-06-22T14:00:40,666 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-06-22T14:00:40,667 combination with a more fine grained `package-data` configuration. 2024-06-22T14:00:40,668 You can read more about "package data files" on setuptools documentation page: 2024-06-22T14:00:40,669 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-06-22T14:00:40,670 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-06-22T14:00:40,670 even if it does not contain any `.py` files. 2024-06-22T14:00:40,670 On the other hand, currently there is no concept of package data 2024-06-22T14:00:40,671 directory, all directories are treated like packages. 2024-06-22T14:00:40,671 ******************************************************************************** 2024-06-22T14:00:40,672 !! 2024-06-22T14:00:40,672 check.warn(importable) 2024-06-22T14:00:40,672 /tmp/pip-build-env-ye0gin6m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.qc3C' is absent from the `packages` configuration. 2024-06-22T14:00:40,673 !! 2024-06-22T14:00:40,673 ******************************************************************************** 2024-06-22T14:00:40,674 ############################ 2024-06-22T14:00:40,674 # Package would be ignored # 2024-06-22T14:00:40,675 ############################ 2024-06-22T14:00:40,675 Python recognizes 'multiqc.modules.qc3C' as an importable package[^1], 2024-06-22T14:00:40,675 but it is absent from setuptools' `packages` configuration. 2024-06-22T14:00:40,676 This leads to an ambiguous overall configuration. If you want to distribute this 2024-06-22T14:00:40,677 package, please make sure that 'multiqc.modules.qc3C' is explicitly added 2024-06-22T14:00:40,677 to the `packages` configuration field. 2024-06-22T14:00:40,678 Alternatively, you can also rely on setuptools' discovery methods 2024-06-22T14:00:40,679 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-06-22T14:00:40,679 instead of `find_packages(...)`/`find:`). 2024-06-22T14:00:40,680 You can read more about "package discovery" on setuptools documentation page: 2024-06-22T14:00:40,682 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-06-22T14:00:40,683 If you don't want 'multiqc.modules.qc3C' to be distributed and are 2024-06-22T14:00:40,683 already explicitly excluding 'multiqc.modules.qc3C' via 2024-06-22T14:00:40,684 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-06-22T14:00:40,685 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-06-22T14:00:40,685 combination with a more fine grained `package-data` configuration. 2024-06-22T14:00:40,686 You can read more about "package data files" on setuptools documentation page: 2024-06-22T14:00:40,687 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-06-22T14:00:40,689 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-06-22T14:00:40,689 even if it does not contain any `.py` files. 2024-06-22T14:00:40,690 On the other hand, currently there is no concept of package data 2024-06-22T14:00:40,690 directory, all directories are treated like packages. 2024-06-22T14:00:40,691 ******************************************************************************** 2024-06-22T14:00:40,692 !! 2024-06-22T14:00:40,693 check.warn(importable) 2024-06-22T14:00:40,693 /tmp/pip-build-env-ye0gin6m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.qorts' is absent from the `packages` configuration. 2024-06-22T14:00:40,694 !! 2024-06-22T14:00:40,695 ******************************************************************************** 2024-06-22T14:00:40,695 ############################ 2024-06-22T14:00:40,695 # Package would be ignored # 2024-06-22T14:00:40,696 ############################ 2024-06-22T14:00:40,696 Python recognizes 'multiqc.modules.qorts' as an importable package[^1], 2024-06-22T14:00:40,696 but it is absent from setuptools' `packages` configuration. 2024-06-22T14:00:40,697 This leads to an ambiguous overall configuration. If you want to distribute this 2024-06-22T14:00:40,697 package, please make sure that 'multiqc.modules.qorts' is explicitly added 2024-06-22T14:00:40,698 to the `packages` configuration field. 2024-06-22T14:00:40,699 Alternatively, you can also rely on setuptools' discovery methods 2024-06-22T14:00:40,699 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-06-22T14:00:40,699 instead of `find_packages(...)`/`find:`). 2024-06-22T14:00:40,700 You can read more about "package discovery" on setuptools documentation page: 2024-06-22T14:00:40,701 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-06-22T14:00:40,702 If you don't want 'multiqc.modules.qorts' to be distributed and are 2024-06-22T14:00:40,702 already explicitly excluding 'multiqc.modules.qorts' via 2024-06-22T14:00:40,702 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-06-22T14:00:40,703 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-06-22T14:00:40,703 combination with a more fine grained `package-data` configuration. 2024-06-22T14:00:40,704 You can read more about "package data files" on setuptools documentation page: 2024-06-22T14:00:40,705 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-06-22T14:00:40,707 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-06-22T14:00:40,708 even if it does not contain any `.py` files. 2024-06-22T14:00:40,708 On the other hand, currently there is no concept of package data 2024-06-22T14:00:40,709 directory, all directories are treated like packages. 2024-06-22T14:00:40,709 ******************************************************************************** 2024-06-22T14:00:40,710 !! 2024-06-22T14:00:40,711 check.warn(importable) 2024-06-22T14:00:40,711 /tmp/pip-build-env-ye0gin6m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.qualimap' is absent from the `packages` configuration. 2024-06-22T14:00:40,712 !! 2024-06-22T14:00:40,713 ******************************************************************************** 2024-06-22T14:00:40,713 ############################ 2024-06-22T14:00:40,714 # Package would be ignored # 2024-06-22T14:00:40,714 ############################ 2024-06-22T14:00:40,715 Python recognizes 'multiqc.modules.qualimap' as an importable package[^1], 2024-06-22T14:00:40,715 but it is absent from setuptools' `packages` configuration. 2024-06-22T14:00:40,716 This leads to an ambiguous overall configuration. If you want to distribute this 2024-06-22T14:00:40,717 package, please make sure that 'multiqc.modules.qualimap' is explicitly added 2024-06-22T14:00:40,717 to the `packages` configuration field. 2024-06-22T14:00:40,718 Alternatively, you can also rely on setuptools' discovery methods 2024-06-22T14:00:40,719 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-06-22T14:00:40,719 instead of `find_packages(...)`/`find:`). 2024-06-22T14:00:40,720 You can read more about "package discovery" on setuptools documentation page: 2024-06-22T14:00:40,722 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-06-22T14:00:40,722 If you don't want 'multiqc.modules.qualimap' to be distributed and are 2024-06-22T14:00:40,723 already explicitly excluding 'multiqc.modules.qualimap' via 2024-06-22T14:00:40,723 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-06-22T14:00:40,723 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-06-22T14:00:40,724 combination with a more fine grained `package-data` configuration. 2024-06-22T14:00:40,724 You can read more about "package data files" on setuptools documentation page: 2024-06-22T14:00:40,725 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-06-22T14:00:40,726 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-06-22T14:00:40,726 even if it does not contain any `.py` files. 2024-06-22T14:00:40,727 On the other hand, currently there is no concept of package data 2024-06-22T14:00:40,727 directory, all directories are treated like packages. 2024-06-22T14:00:40,728 ******************************************************************************** 2024-06-22T14:00:40,728 !! 2024-06-22T14:00:40,729 check.warn(importable) 2024-06-22T14:00:40,729 /tmp/pip-build-env-ye0gin6m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.quast' is absent from the `packages` configuration. 2024-06-22T14:00:40,729 !! 2024-06-22T14:00:40,731 ******************************************************************************** 2024-06-22T14:00:40,731 ############################ 2024-06-22T14:00:40,732 # Package would be ignored # 2024-06-22T14:00:40,732 ############################ 2024-06-22T14:00:40,733 Python recognizes 'multiqc.modules.quast' as an importable package[^1], 2024-06-22T14:00:40,733 but it is absent from setuptools' `packages` configuration. 2024-06-22T14:00:40,734 This leads to an ambiguous overall configuration. If you want to distribute this 2024-06-22T14:00:40,735 package, please make sure that 'multiqc.modules.quast' is explicitly added 2024-06-22T14:00:40,736 to the `packages` configuration field. 2024-06-22T14:00:40,737 Alternatively, you can also rely on setuptools' discovery methods 2024-06-22T14:00:40,738 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-06-22T14:00:40,738 instead of `find_packages(...)`/`find:`). 2024-06-22T14:00:40,739 You can read more about "package discovery" on setuptools documentation page: 2024-06-22T14:00:40,740 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-06-22T14:00:40,741 If you don't want 'multiqc.modules.quast' to be distributed and are 2024-06-22T14:00:40,741 already explicitly excluding 'multiqc.modules.quast' via 2024-06-22T14:00:40,742 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-06-22T14:00:40,742 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-06-22T14:00:40,743 combination with a more fine grained `package-data` configuration. 2024-06-22T14:00:40,744 You can read more about "package data files" on setuptools documentation page: 2024-06-22T14:00:40,745 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-06-22T14:00:40,746 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-06-22T14:00:40,747 even if it does not contain any `.py` files. 2024-06-22T14:00:40,748 On the other hand, currently there is no concept of package data 2024-06-22T14:00:40,748 directory, all directories are treated like packages. 2024-06-22T14:00:40,749 ******************************************************************************** 2024-06-22T14:00:40,749 !! 2024-06-22T14:00:40,750 check.warn(importable) 2024-06-22T14:00:40,750 /tmp/pip-build-env-ye0gin6m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.rna_seqc' is absent from the `packages` configuration. 2024-06-22T14:00:40,750 !! 2024-06-22T14:00:40,751 ******************************************************************************** 2024-06-22T14:00:40,751 ############################ 2024-06-22T14:00:40,752 # Package would be ignored # 2024-06-22T14:00:40,752 ############################ 2024-06-22T14:00:40,752 Python recognizes 'multiqc.modules.rna_seqc' as an importable package[^1], 2024-06-22T14:00:40,753 but it is absent from setuptools' `packages` configuration. 2024-06-22T14:00:40,753 This leads to an ambiguous overall configuration. If you want to distribute this 2024-06-22T14:00:40,754 package, please make sure that 'multiqc.modules.rna_seqc' is explicitly added 2024-06-22T14:00:40,754 to the `packages` configuration field. 2024-06-22T14:00:40,755 Alternatively, you can also rely on setuptools' discovery methods 2024-06-22T14:00:40,755 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-06-22T14:00:40,756 instead of `find_packages(...)`/`find:`). 2024-06-22T14:00:40,756 You can read more about "package discovery" on setuptools documentation page: 2024-06-22T14:00:40,757 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-06-22T14:00:40,758 If you don't want 'multiqc.modules.rna_seqc' to be distributed and are 2024-06-22T14:00:40,759 already explicitly excluding 'multiqc.modules.rna_seqc' via 2024-06-22T14:00:40,760 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-06-22T14:00:40,760 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-06-22T14:00:40,761 combination with a more fine grained `package-data` configuration. 2024-06-22T14:00:40,762 You can read more about "package data files" on setuptools documentation page: 2024-06-22T14:00:40,763 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-06-22T14:00:40,765 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-06-22T14:00:40,765 even if it does not contain any `.py` files. 2024-06-22T14:00:40,766 On the other hand, currently there is no concept of package data 2024-06-22T14:00:40,767 directory, all directories are treated like packages. 2024-06-22T14:00:40,767 ******************************************************************************** 2024-06-22T14:00:40,768 !! 2024-06-22T14:00:40,768 check.warn(importable) 2024-06-22T14:00:40,769 /tmp/pip-build-env-ye0gin6m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.rockhopper' is absent from the `packages` configuration. 2024-06-22T14:00:40,769 !! 2024-06-22T14:00:40,770 ******************************************************************************** 2024-06-22T14:00:40,771 ############################ 2024-06-22T14:00:40,771 # Package would be ignored # 2024-06-22T14:00:40,772 ############################ 2024-06-22T14:00:40,772 Python recognizes 'multiqc.modules.rockhopper' as an importable package[^1], 2024-06-22T14:00:40,773 but it is absent from setuptools' `packages` configuration. 2024-06-22T14:00:40,774 This leads to an ambiguous overall configuration. If you want to distribute this 2024-06-22T14:00:40,774 package, please make sure that 'multiqc.modules.rockhopper' is explicitly added 2024-06-22T14:00:40,775 to the `packages` configuration field. 2024-06-22T14:00:40,776 Alternatively, you can also rely on setuptools' discovery methods 2024-06-22T14:00:40,777 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-06-22T14:00:40,777 instead of `find_packages(...)`/`find:`). 2024-06-22T14:00:40,778 You can read more about "package discovery" on setuptools documentation page: 2024-06-22T14:00:40,778 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-06-22T14:00:40,779 If you don't want 'multiqc.modules.rockhopper' to be distributed and are 2024-06-22T14:00:40,779 already explicitly excluding 'multiqc.modules.rockhopper' via 2024-06-22T14:00:40,780 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-06-22T14:00:40,780 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-06-22T14:00:40,780 combination with a more fine grained `package-data` configuration. 2024-06-22T14:00:40,781 You can read more about "package data files" on setuptools documentation page: 2024-06-22T14:00:40,782 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-06-22T14:00:40,783 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-06-22T14:00:40,783 even if it does not contain any `.py` files. 2024-06-22T14:00:40,784 On the other hand, currently there is no concept of package data 2024-06-22T14:00:40,784 directory, all directories are treated like packages. 2024-06-22T14:00:40,785 ******************************************************************************** 2024-06-22T14:00:40,786 !! 2024-06-22T14:00:40,786 check.warn(importable) 2024-06-22T14:00:40,787 /tmp/pip-build-env-ye0gin6m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.rsem' is absent from the `packages` configuration. 2024-06-22T14:00:40,787 !! 2024-06-22T14:00:40,788 ******************************************************************************** 2024-06-22T14:00:40,789 ############################ 2024-06-22T14:00:40,789 # Package would be ignored # 2024-06-22T14:00:40,790 ############################ 2024-06-22T14:00:40,791 Python recognizes 'multiqc.modules.rsem' as an importable package[^1], 2024-06-22T14:00:40,791 but it is absent from setuptools' `packages` configuration. 2024-06-22T14:00:40,792 This leads to an ambiguous overall configuration. If you want to distribute this 2024-06-22T14:00:40,793 package, please make sure that 'multiqc.modules.rsem' is explicitly added 2024-06-22T14:00:40,793 to the `packages` configuration field. 2024-06-22T14:00:40,794 Alternatively, you can also rely on setuptools' discovery methods 2024-06-22T14:00:40,795 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-06-22T14:00:40,795 instead of `find_packages(...)`/`find:`). 2024-06-22T14:00:40,800 You can read more about "package discovery" on setuptools documentation page: 2024-06-22T14:00:40,801 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-06-22T14:00:40,802 If you don't want 'multiqc.modules.rsem' to be distributed and are 2024-06-22T14:00:40,803 already explicitly excluding 'multiqc.modules.rsem' via 2024-06-22T14:00:40,803 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-06-22T14:00:40,804 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-06-22T14:00:40,805 combination with a more fine grained `package-data` configuration. 2024-06-22T14:00:40,806 You can read more about "package data files" on setuptools documentation page: 2024-06-22T14:00:40,807 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-06-22T14:00:40,808 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-06-22T14:00:40,808 even if it does not contain any `.py` files. 2024-06-22T14:00:40,808 On the other hand, currently there is no concept of package data 2024-06-22T14:00:40,809 directory, all directories are treated like packages. 2024-06-22T14:00:40,809 ******************************************************************************** 2024-06-22T14:00:40,810 !! 2024-06-22T14:00:40,810 check.warn(importable) 2024-06-22T14:00:40,810 /tmp/pip-build-env-ye0gin6m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.rseqc' is absent from the `packages` configuration. 2024-06-22T14:00:40,811 !! 2024-06-22T14:00:40,812 ******************************************************************************** 2024-06-22T14:00:40,812 ############################ 2024-06-22T14:00:40,812 # Package would be ignored # 2024-06-22T14:00:40,813 ############################ 2024-06-22T14:00:40,813 Python recognizes 'multiqc.modules.rseqc' as an importable package[^1], 2024-06-22T14:00:40,813 but it is absent from setuptools' `packages` configuration. 2024-06-22T14:00:40,814 This leads to an ambiguous overall configuration. If you want to distribute this 2024-06-22T14:00:40,814 package, please make sure that 'multiqc.modules.rseqc' is explicitly added 2024-06-22T14:00:40,815 to the `packages` configuration field. 2024-06-22T14:00:40,816 Alternatively, you can also rely on setuptools' discovery methods 2024-06-22T14:00:40,816 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-06-22T14:00:40,817 instead of `find_packages(...)`/`find:`). 2024-06-22T14:00:40,818 You can read more about "package discovery" on setuptools documentation page: 2024-06-22T14:00:40,819 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-06-22T14:00:40,820 If you don't want 'multiqc.modules.rseqc' to be distributed and are 2024-06-22T14:00:40,821 already explicitly excluding 'multiqc.modules.rseqc' via 2024-06-22T14:00:40,821 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-06-22T14:00:40,822 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-06-22T14:00:40,822 combination with a more fine grained `package-data` configuration. 2024-06-22T14:00:40,823 You can read more about "package data files" on setuptools documentation page: 2024-06-22T14:00:40,824 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-06-22T14:00:40,826 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-06-22T14:00:40,826 even if it does not contain any `.py` files. 2024-06-22T14:00:40,827 On the other hand, currently there is no concept of package data 2024-06-22T14:00:40,827 directory, all directories are treated like packages. 2024-06-22T14:00:40,828 ******************************************************************************** 2024-06-22T14:00:40,828 !! 2024-06-22T14:00:40,829 check.warn(importable) 2024-06-22T14:00:40,829 /tmp/pip-build-env-ye0gin6m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.rseqc.assets.js' is absent from the `packages` configuration. 2024-06-22T14:00:40,830 !! 2024-06-22T14:00:40,831 ******************************************************************************** 2024-06-22T14:00:40,831 ############################ 2024-06-22T14:00:40,832 # Package would be ignored # 2024-06-22T14:00:40,833 ############################ 2024-06-22T14:00:40,834 Python recognizes 'multiqc.modules.rseqc.assets.js' as an importable package[^1], 2024-06-22T14:00:40,834 but it is absent from setuptools' `packages` configuration. 2024-06-22T14:00:40,835 This leads to an ambiguous overall configuration. If you want to distribute this 2024-06-22T14:00:40,835 package, please make sure that 'multiqc.modules.rseqc.assets.js' is explicitly added 2024-06-22T14:00:40,835 to the `packages` configuration field. 2024-06-22T14:00:40,836 Alternatively, you can also rely on setuptools' discovery methods 2024-06-22T14:00:40,836 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-06-22T14:00:40,837 instead of `find_packages(...)`/`find:`). 2024-06-22T14:00:40,838 You can read more about "package discovery" on setuptools documentation page: 2024-06-22T14:00:40,839 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-06-22T14:00:40,840 If you don't want 'multiqc.modules.rseqc.assets.js' to be distributed and are 2024-06-22T14:00:40,840 already explicitly excluding 'multiqc.modules.rseqc.assets.js' via 2024-06-22T14:00:40,840 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-06-22T14:00:40,841 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-06-22T14:00:40,841 combination with a more fine grained `package-data` configuration. 2024-06-22T14:00:40,842 You can read more about "package data files" on setuptools documentation page: 2024-06-22T14:00:40,843 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-06-22T14:00:40,845 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-06-22T14:00:40,845 even if it does not contain any `.py` files. 2024-06-22T14:00:40,846 On the other hand, currently there is no concept of package data 2024-06-22T14:00:40,846 directory, all directories are treated like packages. 2024-06-22T14:00:40,847 ******************************************************************************** 2024-06-22T14:00:40,848 !! 2024-06-22T14:00:40,848 check.warn(importable) 2024-06-22T14:00:40,849 /tmp/pip-build-env-ye0gin6m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.salmon' is absent from the `packages` configuration. 2024-06-22T14:00:40,849 !! 2024-06-22T14:00:40,851 ******************************************************************************** 2024-06-22T14:00:40,851 ############################ 2024-06-22T14:00:40,852 # Package would be ignored # 2024-06-22T14:00:40,852 ############################ 2024-06-22T14:00:40,853 Python recognizes 'multiqc.modules.salmon' as an importable package[^1], 2024-06-22T14:00:40,853 but it is absent from setuptools' `packages` configuration. 2024-06-22T14:00:40,854 This leads to an ambiguous overall configuration. If you want to distribute this 2024-06-22T14:00:40,855 package, please make sure that 'multiqc.modules.salmon' is explicitly added 2024-06-22T14:00:40,855 to the `packages` configuration field. 2024-06-22T14:00:40,856 Alternatively, you can also rely on setuptools' discovery methods 2024-06-22T14:00:40,856 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-06-22T14:00:40,857 instead of `find_packages(...)`/`find:`). 2024-06-22T14:00:40,858 You can read more about "package discovery" on setuptools documentation page: 2024-06-22T14:00:40,859 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-06-22T14:00:40,860 If you don't want 'multiqc.modules.salmon' to be distributed and are 2024-06-22T14:00:40,861 already explicitly excluding 'multiqc.modules.salmon' via 2024-06-22T14:00:40,862 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-06-22T14:00:40,862 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-06-22T14:00:40,862 combination with a more fine grained `package-data` configuration. 2024-06-22T14:00:40,863 You can read more about "package data files" on setuptools documentation page: 2024-06-22T14:00:40,864 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-06-22T14:00:40,865 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-06-22T14:00:40,865 even if it does not contain any `.py` files. 2024-06-22T14:00:40,865 On the other hand, currently there is no concept of package data 2024-06-22T14:00:40,866 directory, all directories are treated like packages. 2024-06-22T14:00:40,866 ******************************************************************************** 2024-06-22T14:00:40,867 !! 2024-06-22T14:00:40,867 check.warn(importable) 2024-06-22T14:00:40,867 /tmp/pip-build-env-ye0gin6m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.sambamba' is absent from the `packages` configuration. 2024-06-22T14:00:40,868 !! 2024-06-22T14:00:40,869 ******************************************************************************** 2024-06-22T14:00:40,869 ############################ 2024-06-22T14:00:40,869 # Package would be ignored # 2024-06-22T14:00:40,870 ############################ 2024-06-22T14:00:40,870 Python recognizes 'multiqc.modules.sambamba' as an importable package[^1], 2024-06-22T14:00:40,871 but it is absent from setuptools' `packages` configuration. 2024-06-22T14:00:40,872 This leads to an ambiguous overall configuration. If you want to distribute this 2024-06-22T14:00:40,872 package, please make sure that 'multiqc.modules.sambamba' is explicitly added 2024-06-22T14:00:40,873 to the `packages` configuration field. 2024-06-22T14:00:40,874 Alternatively, you can also rely on setuptools' discovery methods 2024-06-22T14:00:40,874 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-06-22T14:00:40,875 instead of `find_packages(...)`/`find:`). 2024-06-22T14:00:40,876 You can read more about "package discovery" on setuptools documentation page: 2024-06-22T14:00:40,877 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-06-22T14:00:40,878 If you don't want 'multiqc.modules.sambamba' to be distributed and are 2024-06-22T14:00:40,878 already explicitly excluding 'multiqc.modules.sambamba' via 2024-06-22T14:00:40,879 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-06-22T14:00:40,879 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-06-22T14:00:40,880 combination with a more fine grained `package-data` configuration. 2024-06-22T14:00:40,881 You can read more about "package data files" on setuptools documentation page: 2024-06-22T14:00:40,882 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-06-22T14:00:40,883 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-06-22T14:00:40,884 even if it does not contain any `.py` files. 2024-06-22T14:00:40,884 On the other hand, currently there is no concept of package data 2024-06-22T14:00:40,885 directory, all directories are treated like packages. 2024-06-22T14:00:40,885 ******************************************************************************** 2024-06-22T14:00:40,887 !! 2024-06-22T14:00:40,887 check.warn(importable) 2024-06-22T14:00:40,888 /tmp/pip-build-env-ye0gin6m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.samblaster' is absent from the `packages` configuration. 2024-06-22T14:00:40,889 !! 2024-06-22T14:00:40,889 ******************************************************************************** 2024-06-22T14:00:40,890 ############################ 2024-06-22T14:00:40,890 # Package would be ignored # 2024-06-22T14:00:40,890 ############################ 2024-06-22T14:00:40,891 Python recognizes 'multiqc.modules.samblaster' as an importable package[^1], 2024-06-22T14:00:40,891 but it is absent from setuptools' `packages` configuration. 2024-06-22T14:00:40,892 This leads to an ambiguous overall configuration. If you want to distribute this 2024-06-22T14:00:40,892 package, please make sure that 'multiqc.modules.samblaster' is explicitly added 2024-06-22T14:00:40,892 to the `packages` configuration field. 2024-06-22T14:00:40,893 Alternatively, you can also rely on setuptools' discovery methods 2024-06-22T14:00:40,893 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-06-22T14:00:40,894 instead of `find_packages(...)`/`find:`). 2024-06-22T14:00:40,894 You can read more about "package discovery" on setuptools documentation page: 2024-06-22T14:00:40,895 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-06-22T14:00:40,896 If you don't want 'multiqc.modules.samblaster' to be distributed and are 2024-06-22T14:00:40,896 already explicitly excluding 'multiqc.modules.samblaster' via 2024-06-22T14:00:40,897 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-06-22T14:00:40,897 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-06-22T14:00:40,898 combination with a more fine grained `package-data` configuration. 2024-06-22T14:00:40,899 You can read more about "package data files" on setuptools documentation page: 2024-06-22T14:00:40,900 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-06-22T14:00:40,901 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-06-22T14:00:40,902 even if it does not contain any `.py` files. 2024-06-22T14:00:40,902 On the other hand, currently there is no concept of package data 2024-06-22T14:00:40,903 directory, all directories are treated like packages. 2024-06-22T14:00:40,904 ******************************************************************************** 2024-06-22T14:00:40,905 !! 2024-06-22T14:00:40,905 check.warn(importable) 2024-06-22T14:00:40,906 /tmp/pip-build-env-ye0gin6m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.samtools' is absent from the `packages` configuration. 2024-06-22T14:00:40,906 !! 2024-06-22T14:00:40,907 ******************************************************************************** 2024-06-22T14:00:40,907 ############################ 2024-06-22T14:00:40,908 # Package would be ignored # 2024-06-22T14:00:40,908 ############################ 2024-06-22T14:00:40,909 Python recognizes 'multiqc.modules.samtools' as an importable package[^1], 2024-06-22T14:00:40,909 but it is absent from setuptools' `packages` configuration. 2024-06-22T14:00:40,910 This leads to an ambiguous overall configuration. If you want to distribute this 2024-06-22T14:00:40,911 package, please make sure that 'multiqc.modules.samtools' is explicitly added 2024-06-22T14:00:40,911 to the `packages` configuration field. 2024-06-22T14:00:40,913 Alternatively, you can also rely on setuptools' discovery methods 2024-06-22T14:00:40,913 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-06-22T14:00:40,914 instead of `find_packages(...)`/`find:`). 2024-06-22T14:00:40,915 You can read more about "package discovery" on setuptools documentation page: 2024-06-22T14:00:40,916 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-06-22T14:00:40,916 If you don't want 'multiqc.modules.samtools' to be distributed and are 2024-06-22T14:00:40,917 already explicitly excluding 'multiqc.modules.samtools' via 2024-06-22T14:00:40,917 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-06-22T14:00:40,917 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-06-22T14:00:40,918 combination with a more fine grained `package-data` configuration. 2024-06-22T14:00:40,919 You can read more about "package data files" on setuptools documentation page: 2024-06-22T14:00:40,919 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-06-22T14:00:40,920 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-06-22T14:00:40,921 even if it does not contain any `.py` files. 2024-06-22T14:00:40,921 On the other hand, currently there is no concept of package data 2024-06-22T14:00:40,921 directory, all directories are treated like packages. 2024-06-22T14:00:40,922 ******************************************************************************** 2024-06-22T14:00:40,923 !! 2024-06-22T14:00:40,923 check.warn(importable) 2024-06-22T14:00:40,924 /tmp/pip-build-env-ye0gin6m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.samtools.tests' is absent from the `packages` configuration. 2024-06-22T14:00:40,924 !! 2024-06-22T14:00:40,925 ******************************************************************************** 2024-06-22T14:00:40,925 ############################ 2024-06-22T14:00:40,926 # Package would be ignored # 2024-06-22T14:00:40,926 ############################ 2024-06-22T14:00:40,927 Python recognizes 'multiqc.modules.samtools.tests' as an importable package[^1], 2024-06-22T14:00:40,927 but it is absent from setuptools' `packages` configuration. 2024-06-22T14:00:40,928 This leads to an ambiguous overall configuration. If you want to distribute this 2024-06-22T14:00:40,929 package, please make sure that 'multiqc.modules.samtools.tests' is explicitly added 2024-06-22T14:00:40,929 to the `packages` configuration field. 2024-06-22T14:00:40,930 Alternatively, you can also rely on setuptools' discovery methods 2024-06-22T14:00:40,931 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-06-22T14:00:40,931 instead of `find_packages(...)`/`find:`). 2024-06-22T14:00:40,932 You can read more about "package discovery" on setuptools documentation page: 2024-06-22T14:00:40,933 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-06-22T14:00:40,934 If you don't want 'multiqc.modules.samtools.tests' to be distributed and are 2024-06-22T14:00:40,934 already explicitly excluding 'multiqc.modules.samtools.tests' via 2024-06-22T14:00:40,935 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-06-22T14:00:40,935 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-06-22T14:00:40,936 combination with a more fine grained `package-data` configuration. 2024-06-22T14:00:40,937 You can read more about "package data files" on setuptools documentation page: 2024-06-22T14:00:40,938 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-06-22T14:00:40,939 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-06-22T14:00:40,940 even if it does not contain any `.py` files. 2024-06-22T14:00:40,941 On the other hand, currently there is no concept of package data 2024-06-22T14:00:40,941 directory, all directories are treated like packages. 2024-06-22T14:00:40,941 ******************************************************************************** 2024-06-22T14:00:40,942 !! 2024-06-22T14:00:40,942 check.warn(importable) 2024-06-22T14:00:40,943 /tmp/pip-build-env-ye0gin6m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.sargasso' is absent from the `packages` configuration. 2024-06-22T14:00:40,943 !! 2024-06-22T14:00:40,944 ******************************************************************************** 2024-06-22T14:00:40,944 ############################ 2024-06-22T14:00:40,944 # Package would be ignored # 2024-06-22T14:00:40,945 ############################ 2024-06-22T14:00:40,945 Python recognizes 'multiqc.modules.sargasso' as an importable package[^1], 2024-06-22T14:00:40,945 but it is absent from setuptools' `packages` configuration. 2024-06-22T14:00:40,946 This leads to an ambiguous overall configuration. If you want to distribute this 2024-06-22T14:00:40,946 package, please make sure that 'multiqc.modules.sargasso' is explicitly added 2024-06-22T14:00:40,947 to the `packages` configuration field. 2024-06-22T14:00:40,948 Alternatively, you can also rely on setuptools' discovery methods 2024-06-22T14:00:40,948 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-06-22T14:00:40,949 instead of `find_packages(...)`/`find:`). 2024-06-22T14:00:40,950 You can read more about "package discovery" on setuptools documentation page: 2024-06-22T14:00:40,951 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-06-22T14:00:40,952 If you don't want 'multiqc.modules.sargasso' to be distributed and are 2024-06-22T14:00:40,952 already explicitly excluding 'multiqc.modules.sargasso' via 2024-06-22T14:00:40,953 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-06-22T14:00:40,953 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-06-22T14:00:40,954 combination with a more fine grained `package-data` configuration. 2024-06-22T14:00:40,955 You can read more about "package data files" on setuptools documentation page: 2024-06-22T14:00:40,956 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-06-22T14:00:40,957 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-06-22T14:00:40,958 even if it does not contain any `.py` files. 2024-06-22T14:00:40,958 On the other hand, currently there is no concept of package data 2024-06-22T14:00:40,959 directory, all directories are treated like packages. 2024-06-22T14:00:40,959 ******************************************************************************** 2024-06-22T14:00:40,960 !! 2024-06-22T14:00:40,960 check.warn(importable) 2024-06-22T14:00:40,961 /tmp/pip-build-env-ye0gin6m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.seqera_cli' is absent from the `packages` configuration. 2024-06-22T14:00:40,961 !! 2024-06-22T14:00:40,962 ******************************************************************************** 2024-06-22T14:00:40,963 ############################ 2024-06-22T14:00:40,963 # Package would be ignored # 2024-06-22T14:00:40,964 ############################ 2024-06-22T14:00:40,964 Python recognizes 'multiqc.modules.seqera_cli' as an importable package[^1], 2024-06-22T14:00:40,965 but it is absent from setuptools' `packages` configuration. 2024-06-22T14:00:40,966 This leads to an ambiguous overall configuration. If you want to distribute this 2024-06-22T14:00:40,967 package, please make sure that 'multiqc.modules.seqera_cli' is explicitly added 2024-06-22T14:00:40,967 to the `packages` configuration field. 2024-06-22T14:00:40,968 Alternatively, you can also rely on setuptools' discovery methods 2024-06-22T14:00:40,968 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-06-22T14:00:40,968 instead of `find_packages(...)`/`find:`). 2024-06-22T14:00:40,969 You can read more about "package discovery" on setuptools documentation page: 2024-06-22T14:00:40,970 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-06-22T14:00:40,970 If you don't want 'multiqc.modules.seqera_cli' to be distributed and are 2024-06-22T14:00:40,971 already explicitly excluding 'multiqc.modules.seqera_cli' via 2024-06-22T14:00:40,971 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-06-22T14:00:40,971 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-06-22T14:00:40,972 combination with a more fine grained `package-data` configuration. 2024-06-22T14:00:40,973 You can read more about "package data files" on setuptools documentation page: 2024-06-22T14:00:40,974 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-06-22T14:00:40,975 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-06-22T14:00:40,975 even if it does not contain any `.py` files. 2024-06-22T14:00:40,976 On the other hand, currently there is no concept of package data 2024-06-22T14:00:40,976 directory, all directories are treated like packages. 2024-06-22T14:00:40,976 ******************************************************************************** 2024-06-22T14:00:40,977 !! 2024-06-22T14:00:40,978 check.warn(importable) 2024-06-22T14:00:40,978 /tmp/pip-build-env-ye0gin6m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.sequali' is absent from the `packages` configuration. 2024-06-22T14:00:40,979 !! 2024-06-22T14:00:40,980 ******************************************************************************** 2024-06-22T14:00:40,980 ############################ 2024-06-22T14:00:40,981 # Package would be ignored # 2024-06-22T14:00:40,981 ############################ 2024-06-22T14:00:40,982 Python recognizes 'multiqc.modules.sequali' as an importable package[^1], 2024-06-22T14:00:40,983 but it is absent from setuptools' `packages` configuration. 2024-06-22T14:00:40,984 This leads to an ambiguous overall configuration. If you want to distribute this 2024-06-22T14:00:40,984 package, please make sure that 'multiqc.modules.sequali' is explicitly added 2024-06-22T14:00:40,985 to the `packages` configuration field. 2024-06-22T14:00:40,986 Alternatively, you can also rely on setuptools' discovery methods 2024-06-22T14:00:40,986 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-06-22T14:00:40,987 instead of `find_packages(...)`/`find:`). 2024-06-22T14:00:40,988 You can read more about "package discovery" on setuptools documentation page: 2024-06-22T14:00:40,989 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-06-22T14:00:40,990 If you don't want 'multiqc.modules.sequali' to be distributed and are 2024-06-22T14:00:40,990 already explicitly excluding 'multiqc.modules.sequali' via 2024-06-22T14:00:40,991 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-06-22T14:00:40,991 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-06-22T14:00:40,992 combination with a more fine grained `package-data` configuration. 2024-06-22T14:00:40,993 You can read more about "package data files" on setuptools documentation page: 2024-06-22T14:00:40,993 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-06-22T14:00:40,994 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-06-22T14:00:40,995 even if it does not contain any `.py` files. 2024-06-22T14:00:40,995 On the other hand, currently there is no concept of package data 2024-06-22T14:00:40,995 directory, all directories are treated like packages. 2024-06-22T14:00:40,996 ******************************************************************************** 2024-06-22T14:00:40,996 !! 2024-06-22T14:00:40,997 check.warn(importable) 2024-06-22T14:00:40,997 /tmp/pip-build-env-ye0gin6m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.seqwho' is absent from the `packages` configuration. 2024-06-22T14:00:40,997 !! 2024-06-22T14:00:40,998 ******************************************************************************** 2024-06-22T14:00:40,999 ############################ 2024-06-22T14:00:40,999 # Package would be ignored # 2024-06-22T14:00:40,999 ############################ 2024-06-22T14:00:41,000 Python recognizes 'multiqc.modules.seqwho' as an importable package[^1], 2024-06-22T14:00:41,000 but it is absent from setuptools' `packages` configuration. 2024-06-22T14:00:41,001 This leads to an ambiguous overall configuration. If you want to distribute this 2024-06-22T14:00:41,001 package, please make sure that 'multiqc.modules.seqwho' is explicitly added 2024-06-22T14:00:41,002 to the `packages` configuration field. 2024-06-22T14:00:41,003 Alternatively, you can also rely on setuptools' discovery methods 2024-06-22T14:00:41,003 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-06-22T14:00:41,004 instead of `find_packages(...)`/`find:`). 2024-06-22T14:00:41,005 You can read more about "package discovery" on setuptools documentation page: 2024-06-22T14:00:41,006 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-06-22T14:00:41,007 If you don't want 'multiqc.modules.seqwho' to be distributed and are 2024-06-22T14:00:41,007 already explicitly excluding 'multiqc.modules.seqwho' via 2024-06-22T14:00:41,008 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-06-22T14:00:41,009 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-06-22T14:00:41,009 combination with a more fine grained `package-data` configuration. 2024-06-22T14:00:41,010 You can read more about "package data files" on setuptools documentation page: 2024-06-22T14:00:41,011 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-06-22T14:00:41,012 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-06-22T14:00:41,013 even if it does not contain any `.py` files. 2024-06-22T14:00:41,013 On the other hand, currently there is no concept of package data 2024-06-22T14:00:41,014 directory, all directories are treated like packages. 2024-06-22T14:00:41,014 ******************************************************************************** 2024-06-22T14:00:41,015 !! 2024-06-22T14:00:41,016 check.warn(importable) 2024-06-22T14:00:41,016 /tmp/pip-build-env-ye0gin6m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.seqyclean' is absent from the `packages` configuration. 2024-06-22T14:00:41,017 !! 2024-06-22T14:00:41,018 ******************************************************************************** 2024-06-22T14:00:41,018 ############################ 2024-06-22T14:00:41,019 # Package would be ignored # 2024-06-22T14:00:41,019 ############################ 2024-06-22T14:00:41,019 Python recognizes 'multiqc.modules.seqyclean' as an importable package[^1], 2024-06-22T14:00:41,020 but it is absent from setuptools' `packages` configuration. 2024-06-22T14:00:41,021 This leads to an ambiguous overall configuration. If you want to distribute this 2024-06-22T14:00:41,021 package, please make sure that 'multiqc.modules.seqyclean' is explicitly added 2024-06-22T14:00:41,021 to the `packages` configuration field. 2024-06-22T14:00:41,022 Alternatively, you can also rely on setuptools' discovery methods 2024-06-22T14:00:41,022 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-06-22T14:00:41,023 instead of `find_packages(...)`/`find:`). 2024-06-22T14:00:41,023 You can read more about "package discovery" on setuptools documentation page: 2024-06-22T14:00:41,024 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-06-22T14:00:41,025 If you don't want 'multiqc.modules.seqyclean' to be distributed and are 2024-06-22T14:00:41,025 already explicitly excluding 'multiqc.modules.seqyclean' via 2024-06-22T14:00:41,025 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-06-22T14:00:41,026 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-06-22T14:00:41,026 combination with a more fine grained `package-data` configuration. 2024-06-22T14:00:41,027 You can read more about "package data files" on setuptools documentation page: 2024-06-22T14:00:41,028 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-06-22T14:00:41,030 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-06-22T14:00:41,030 even if it does not contain any `.py` files. 2024-06-22T14:00:41,031 On the other hand, currently there is no concept of package data 2024-06-22T14:00:41,031 directory, all directories are treated like packages. 2024-06-22T14:00:41,032 ******************************************************************************** 2024-06-22T14:00:41,033 !! 2024-06-22T14:00:41,033 check.warn(importable) 2024-06-22T14:00:41,034 /tmp/pip-build-env-ye0gin6m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.sexdeterrmine' is absent from the `packages` configuration. 2024-06-22T14:00:41,034 !! 2024-06-22T14:00:41,035 ******************************************************************************** 2024-06-22T14:00:41,036 ############################ 2024-06-22T14:00:41,036 # Package would be ignored # 2024-06-22T14:00:41,037 ############################ 2024-06-22T14:00:41,037 Python recognizes 'multiqc.modules.sexdeterrmine' as an importable package[^1], 2024-06-22T14:00:41,038 but it is absent from setuptools' `packages` configuration. 2024-06-22T14:00:41,039 This leads to an ambiguous overall configuration. If you want to distribute this 2024-06-22T14:00:41,039 package, please make sure that 'multiqc.modules.sexdeterrmine' is explicitly added 2024-06-22T14:00:41,040 to the `packages` configuration field. 2024-06-22T14:00:41,041 Alternatively, you can also rely on setuptools' discovery methods 2024-06-22T14:00:41,042 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-06-22T14:00:41,042 instead of `find_packages(...)`/`find:`). 2024-06-22T14:00:41,043 You can read more about "package discovery" on setuptools documentation page: 2024-06-22T14:00:41,045 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-06-22T14:00:41,045 If you don't want 'multiqc.modules.sexdeterrmine' to be distributed and are 2024-06-22T14:00:41,046 already explicitly excluding 'multiqc.modules.sexdeterrmine' via 2024-06-22T14:00:41,046 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-06-22T14:00:41,046 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-06-22T14:00:41,047 combination with a more fine grained `package-data` configuration. 2024-06-22T14:00:41,047 You can read more about "package data files" on setuptools documentation page: 2024-06-22T14:00:41,048 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-06-22T14:00:41,049 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-06-22T14:00:41,050 even if it does not contain any `.py` files. 2024-06-22T14:00:41,050 On the other hand, currently there is no concept of package data 2024-06-22T14:00:41,050 directory, all directories are treated like packages. 2024-06-22T14:00:41,051 ******************************************************************************** 2024-06-22T14:00:41,051 !! 2024-06-22T14:00:41,052 check.warn(importable) 2024-06-22T14:00:41,052 /tmp/pip-build-env-ye0gin6m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.sickle' is absent from the `packages` configuration. 2024-06-22T14:00:41,053 !! 2024-06-22T14:00:41,054 ******************************************************************************** 2024-06-22T14:00:41,055 ############################ 2024-06-22T14:00:41,055 # Package would be ignored # 2024-06-22T14:00:41,056 ############################ 2024-06-22T14:00:41,057 Python recognizes 'multiqc.modules.sickle' as an importable package[^1], 2024-06-22T14:00:41,057 but it is absent from setuptools' `packages` configuration. 2024-06-22T14:00:41,058 This leads to an ambiguous overall configuration. If you want to distribute this 2024-06-22T14:00:41,058 package, please make sure that 'multiqc.modules.sickle' is explicitly added 2024-06-22T14:00:41,059 to the `packages` configuration field. 2024-06-22T14:00:41,060 Alternatively, you can also rely on setuptools' discovery methods 2024-06-22T14:00:41,060 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-06-22T14:00:41,061 instead of `find_packages(...)`/`find:`). 2024-06-22T14:00:41,062 You can read more about "package discovery" on setuptools documentation page: 2024-06-22T14:00:41,063 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-06-22T14:00:41,064 If you don't want 'multiqc.modules.sickle' to be distributed and are 2024-06-22T14:00:41,064 already explicitly excluding 'multiqc.modules.sickle' via 2024-06-22T14:00:41,065 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-06-22T14:00:41,065 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-06-22T14:00:41,066 combination with a more fine grained `package-data` configuration. 2024-06-22T14:00:41,067 You can read more about "package data files" on setuptools documentation page: 2024-06-22T14:00:41,068 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-06-22T14:00:41,069 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-06-22T14:00:41,070 even if it does not contain any `.py` files. 2024-06-22T14:00:41,070 On the other hand, currently there is no concept of package data 2024-06-22T14:00:41,071 directory, all directories are treated like packages. 2024-06-22T14:00:41,072 ******************************************************************************** 2024-06-22T14:00:41,072 !! 2024-06-22T14:00:41,073 check.warn(importable) 2024-06-22T14:00:41,073 /tmp/pip-build-env-ye0gin6m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.skewer' is absent from the `packages` configuration. 2024-06-22T14:00:41,073 !! 2024-06-22T14:00:41,074 ******************************************************************************** 2024-06-22T14:00:41,074 ############################ 2024-06-22T14:00:41,075 # Package would be ignored # 2024-06-22T14:00:41,075 ############################ 2024-06-22T14:00:41,075 Python recognizes 'multiqc.modules.skewer' as an importable package[^1], 2024-06-22T14:00:41,076 but it is absent from setuptools' `packages` configuration. 2024-06-22T14:00:41,076 This leads to an ambiguous overall configuration. If you want to distribute this 2024-06-22T14:00:41,077 package, please make sure that 'multiqc.modules.skewer' is explicitly added 2024-06-22T14:00:41,077 to the `packages` configuration field. 2024-06-22T14:00:41,078 Alternatively, you can also rely on setuptools' discovery methods 2024-06-22T14:00:41,078 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-06-22T14:00:41,078 instead of `find_packages(...)`/`find:`). 2024-06-22T14:00:41,079 You can read more about "package discovery" on setuptools documentation page: 2024-06-22T14:00:41,080 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-06-22T14:00:41,081 If you don't want 'multiqc.modules.skewer' to be distributed and are 2024-06-22T14:00:41,081 already explicitly excluding 'multiqc.modules.skewer' via 2024-06-22T14:00:41,082 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-06-22T14:00:41,082 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-06-22T14:00:41,083 combination with a more fine grained `package-data` configuration. 2024-06-22T14:00:41,083 You can read more about "package data files" on setuptools documentation page: 2024-06-22T14:00:41,084 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-06-22T14:00:41,086 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-06-22T14:00:41,086 even if it does not contain any `.py` files. 2024-06-22T14:00:41,087 On the other hand, currently there is no concept of package data 2024-06-22T14:00:41,087 directory, all directories are treated like packages. 2024-06-22T14:00:41,088 ******************************************************************************** 2024-06-22T14:00:41,089 !! 2024-06-22T14:00:41,089 check.warn(importable) 2024-06-22T14:00:41,090 /tmp/pip-build-env-ye0gin6m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.slamdunk' is absent from the `packages` configuration. 2024-06-22T14:00:41,090 !! 2024-06-22T14:00:41,091 ******************************************************************************** 2024-06-22T14:00:41,091 ############################ 2024-06-22T14:00:41,092 # Package would be ignored # 2024-06-22T14:00:41,092 ############################ 2024-06-22T14:00:41,093 Python recognizes 'multiqc.modules.slamdunk' as an importable package[^1], 2024-06-22T14:00:41,093 but it is absent from setuptools' `packages` configuration. 2024-06-22T14:00:41,094 This leads to an ambiguous overall configuration. If you want to distribute this 2024-06-22T14:00:41,095 package, please make sure that 'multiqc.modules.slamdunk' is explicitly added 2024-06-22T14:00:41,095 to the `packages` configuration field. 2024-06-22T14:00:41,096 Alternatively, you can also rely on setuptools' discovery methods 2024-06-22T14:00:41,097 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-06-22T14:00:41,097 instead of `find_packages(...)`/`find:`). 2024-06-22T14:00:41,098 You can read more about "package discovery" on setuptools documentation page: 2024-06-22T14:00:41,098 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-06-22T14:00:41,099 If you don't want 'multiqc.modules.slamdunk' to be distributed and are 2024-06-22T14:00:41,099 already explicitly excluding 'multiqc.modules.slamdunk' via 2024-06-22T14:00:41,100 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-06-22T14:00:41,100 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-06-22T14:00:41,101 combination with a more fine grained `package-data` configuration. 2024-06-22T14:00:41,101 You can read more about "package data files" on setuptools documentation page: 2024-06-22T14:00:41,102 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-06-22T14:00:41,103 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-06-22T14:00:41,104 even if it does not contain any `.py` files. 2024-06-22T14:00:41,104 On the other hand, currently there is no concept of package data 2024-06-22T14:00:41,104 directory, all directories are treated like packages. 2024-06-22T14:00:41,105 ******************************************************************************** 2024-06-22T14:00:41,106 !! 2024-06-22T14:00:41,106 check.warn(importable) 2024-06-22T14:00:41,107 /tmp/pip-build-env-ye0gin6m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.snippy' is absent from the `packages` configuration. 2024-06-22T14:00:41,107 !! 2024-06-22T14:00:41,108 ******************************************************************************** 2024-06-22T14:00:41,109 ############################ 2024-06-22T14:00:41,109 # Package would be ignored # 2024-06-22T14:00:41,110 ############################ 2024-06-22T14:00:41,110 Python recognizes 'multiqc.modules.snippy' as an importable package[^1], 2024-06-22T14:00:41,111 but it is absent from setuptools' `packages` configuration. 2024-06-22T14:00:41,112 This leads to an ambiguous overall configuration. If you want to distribute this 2024-06-22T14:00:41,112 package, please make sure that 'multiqc.modules.snippy' is explicitly added 2024-06-22T14:00:41,113 to the `packages` configuration field. 2024-06-22T14:00:41,114 Alternatively, you can also rely on setuptools' discovery methods 2024-06-22T14:00:41,114 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-06-22T14:00:41,115 instead of `find_packages(...)`/`find:`). 2024-06-22T14:00:41,115 You can read more about "package discovery" on setuptools documentation page: 2024-06-22T14:00:41,116 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-06-22T14:00:41,117 If you don't want 'multiqc.modules.snippy' to be distributed and are 2024-06-22T14:00:41,118 already explicitly excluding 'multiqc.modules.snippy' via 2024-06-22T14:00:41,118 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-06-22T14:00:41,119 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-06-22T14:00:41,119 combination with a more fine grained `package-data` configuration. 2024-06-22T14:00:41,120 You can read more about "package data files" on setuptools documentation page: 2024-06-22T14:00:41,121 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-06-22T14:00:41,123 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-06-22T14:00:41,123 even if it does not contain any `.py` files. 2024-06-22T14:00:41,123 On the other hand, currently there is no concept of package data 2024-06-22T14:00:41,123 directory, all directories are treated like packages. 2024-06-22T14:00:41,124 ******************************************************************************** 2024-06-22T14:00:41,125 !! 2024-06-22T14:00:41,125 check.warn(importable) 2024-06-22T14:00:41,126 /tmp/pip-build-env-ye0gin6m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.snpeff' is absent from the `packages` configuration. 2024-06-22T14:00:41,126 !! 2024-06-22T14:00:41,127 ******************************************************************************** 2024-06-22T14:00:41,127 ############################ 2024-06-22T14:00:41,128 # Package would be ignored # 2024-06-22T14:00:41,128 ############################ 2024-06-22T14:00:41,128 Python recognizes 'multiqc.modules.snpeff' as an importable package[^1], 2024-06-22T14:00:41,129 but it is absent from setuptools' `packages` configuration. 2024-06-22T14:00:41,130 This leads to an ambiguous overall configuration. If you want to distribute this 2024-06-22T14:00:41,130 package, please make sure that 'multiqc.modules.snpeff' is explicitly added 2024-06-22T14:00:41,130 to the `packages` configuration field. 2024-06-22T14:00:41,131 Alternatively, you can also rely on setuptools' discovery methods 2024-06-22T14:00:41,132 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-06-22T14:00:41,132 instead of `find_packages(...)`/`find:`). 2024-06-22T14:00:41,133 You can read more about "package discovery" on setuptools documentation page: 2024-06-22T14:00:41,134 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-06-22T14:00:41,135 If you don't want 'multiqc.modules.snpeff' to be distributed and are 2024-06-22T14:00:41,135 already explicitly excluding 'multiqc.modules.snpeff' via 2024-06-22T14:00:41,136 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-06-22T14:00:41,136 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-06-22T14:00:41,137 combination with a more fine grained `package-data` configuration. 2024-06-22T14:00:41,138 You can read more about "package data files" on setuptools documentation page: 2024-06-22T14:00:41,139 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-06-22T14:00:41,140 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-06-22T14:00:41,141 even if it does not contain any `.py` files. 2024-06-22T14:00:41,141 On the other hand, currently there is no concept of package data 2024-06-22T14:00:41,142 directory, all directories are treated like packages. 2024-06-22T14:00:41,142 ******************************************************************************** 2024-06-22T14:00:41,143 !! 2024-06-22T14:00:41,143 check.warn(importable) 2024-06-22T14:00:41,144 /tmp/pip-build-env-ye0gin6m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.snpsplit' is absent from the `packages` configuration. 2024-06-22T14:00:41,144 !! 2024-06-22T14:00:41,145 ******************************************************************************** 2024-06-22T14:00:41,146 ############################ 2024-06-22T14:00:41,146 # Package would be ignored # 2024-06-22T14:00:41,147 ############################ 2024-06-22T14:00:41,148 Python recognizes 'multiqc.modules.snpsplit' as an importable package[^1], 2024-06-22T14:00:41,148 but it is absent from setuptools' `packages` configuration. 2024-06-22T14:00:41,149 This leads to an ambiguous overall configuration. If you want to distribute this 2024-06-22T14:00:41,149 package, please make sure that 'multiqc.modules.snpsplit' is explicitly added 2024-06-22T14:00:41,149 to the `packages` configuration field. 2024-06-22T14:00:41,150 Alternatively, you can also rely on setuptools' discovery methods 2024-06-22T14:00:41,150 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-06-22T14:00:41,151 instead of `find_packages(...)`/`find:`). 2024-06-22T14:00:41,151 You can read more about "package discovery" on setuptools documentation page: 2024-06-22T14:00:41,152 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-06-22T14:00:41,153 If you don't want 'multiqc.modules.snpsplit' to be distributed and are 2024-06-22T14:00:41,153 already explicitly excluding 'multiqc.modules.snpsplit' via 2024-06-22T14:00:41,154 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-06-22T14:00:41,154 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-06-22T14:00:41,155 combination with a more fine grained `package-data` configuration. 2024-06-22T14:00:41,155 You can read more about "package data files" on setuptools documentation page: 2024-06-22T14:00:41,156 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-06-22T14:00:41,158 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-06-22T14:00:41,158 even if it does not contain any `.py` files. 2024-06-22T14:00:41,159 On the other hand, currently there is no concept of package data 2024-06-22T14:00:41,159 directory, all directories are treated like packages. 2024-06-22T14:00:41,160 ******************************************************************************** 2024-06-22T14:00:41,161 !! 2024-06-22T14:00:41,161 check.warn(importable) 2024-06-22T14:00:41,162 /tmp/pip-build-env-ye0gin6m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.somalier' is absent from the `packages` configuration. 2024-06-22T14:00:41,162 !! 2024-06-22T14:00:41,163 ******************************************************************************** 2024-06-22T14:00:41,164 ############################ 2024-06-22T14:00:41,165 # Package would be ignored # 2024-06-22T14:00:41,165 ############################ 2024-06-22T14:00:41,165 Python recognizes 'multiqc.modules.somalier' as an importable package[^1], 2024-06-22T14:00:41,166 but it is absent from setuptools' `packages` configuration. 2024-06-22T14:00:41,167 This leads to an ambiguous overall configuration. If you want to distribute this 2024-06-22T14:00:41,167 package, please make sure that 'multiqc.modules.somalier' is explicitly added 2024-06-22T14:00:41,168 to the `packages` configuration field. 2024-06-22T14:00:41,169 Alternatively, you can also rely on setuptools' discovery methods 2024-06-22T14:00:41,169 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-06-22T14:00:41,170 instead of `find_packages(...)`/`find:`). 2024-06-22T14:00:41,171 You can read more about "package discovery" on setuptools documentation page: 2024-06-22T14:00:41,172 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-06-22T14:00:41,173 If you don't want 'multiqc.modules.somalier' to be distributed and are 2024-06-22T14:00:41,173 already explicitly excluding 'multiqc.modules.somalier' via 2024-06-22T14:00:41,174 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-06-22T14:00:41,174 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-06-22T14:00:41,175 combination with a more fine grained `package-data` configuration. 2024-06-22T14:00:41,175 You can read more about "package data files" on setuptools documentation page: 2024-06-22T14:00:41,176 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-06-22T14:00:41,177 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-06-22T14:00:41,178 even if it does not contain any `.py` files. 2024-06-22T14:00:41,178 On the other hand, currently there is no concept of package data 2024-06-22T14:00:41,178 directory, all directories are treated like packages. 2024-06-22T14:00:41,179 ******************************************************************************** 2024-06-22T14:00:41,179 !! 2024-06-22T14:00:41,180 check.warn(importable) 2024-06-22T14:00:41,180 /tmp/pip-build-env-ye0gin6m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.sortmerna' is absent from the `packages` configuration. 2024-06-22T14:00:41,181 !! 2024-06-22T14:00:41,182 ******************************************************************************** 2024-06-22T14:00:41,182 ############################ 2024-06-22T14:00:41,182 # Package would be ignored # 2024-06-22T14:00:41,183 ############################ 2024-06-22T14:00:41,183 Python recognizes 'multiqc.modules.sortmerna' as an importable package[^1], 2024-06-22T14:00:41,184 but it is absent from setuptools' `packages` configuration. 2024-06-22T14:00:41,185 This leads to an ambiguous overall configuration. If you want to distribute this 2024-06-22T14:00:41,185 package, please make sure that 'multiqc.modules.sortmerna' is explicitly added 2024-06-22T14:00:41,185 to the `packages` configuration field. 2024-06-22T14:00:41,186 Alternatively, you can also rely on setuptools' discovery methods 2024-06-22T14:00:41,187 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-06-22T14:00:41,187 instead of `find_packages(...)`/`find:`). 2024-06-22T14:00:41,188 You can read more about "package discovery" on setuptools documentation page: 2024-06-22T14:00:41,189 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-06-22T14:00:41,190 If you don't want 'multiqc.modules.sortmerna' to be distributed and are 2024-06-22T14:00:41,190 already explicitly excluding 'multiqc.modules.sortmerna' via 2024-06-22T14:00:41,191 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-06-22T14:00:41,191 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-06-22T14:00:41,192 combination with a more fine grained `package-data` configuration. 2024-06-22T14:00:41,192 You can read more about "package data files" on setuptools documentation page: 2024-06-22T14:00:41,193 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-06-22T14:00:41,195 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-06-22T14:00:41,195 even if it does not contain any `.py` files. 2024-06-22T14:00:41,196 On the other hand, currently there is no concept of package data 2024-06-22T14:00:41,196 directory, all directories are treated like packages. 2024-06-22T14:00:41,197 ******************************************************************************** 2024-06-22T14:00:41,198 !! 2024-06-22T14:00:41,199 check.warn(importable) 2024-06-22T14:00:41,199 /tmp/pip-build-env-ye0gin6m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.sourmash' is absent from the `packages` configuration. 2024-06-22T14:00:41,200 !! 2024-06-22T14:00:41,201 ******************************************************************************** 2024-06-22T14:00:41,202 ############################ 2024-06-22T14:00:41,202 # Package would be ignored # 2024-06-22T14:00:41,202 ############################ 2024-06-22T14:00:41,203 Python recognizes 'multiqc.modules.sourmash' as an importable package[^1], 2024-06-22T14:00:41,203 but it is absent from setuptools' `packages` configuration. 2024-06-22T14:00:41,204 This leads to an ambiguous overall configuration. If you want to distribute this 2024-06-22T14:00:41,204 package, please make sure that 'multiqc.modules.sourmash' is explicitly added 2024-06-22T14:00:41,204 to the `packages` configuration field. 2024-06-22T14:00:41,205 Alternatively, you can also rely on setuptools' discovery methods 2024-06-22T14:00:41,205 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-06-22T14:00:41,206 instead of `find_packages(...)`/`find:`). 2024-06-22T14:00:41,207 You can read more about "package discovery" on setuptools documentation page: 2024-06-22T14:00:41,207 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-06-22T14:00:41,208 If you don't want 'multiqc.modules.sourmash' to be distributed and are 2024-06-22T14:00:41,208 already explicitly excluding 'multiqc.modules.sourmash' via 2024-06-22T14:00:41,209 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-06-22T14:00:41,209 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-06-22T14:00:41,210 combination with a more fine grained `package-data` configuration. 2024-06-22T14:00:41,211 You can read more about "package data files" on setuptools documentation page: 2024-06-22T14:00:41,212 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-06-22T14:00:41,213 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-06-22T14:00:41,214 even if it does not contain any `.py` files. 2024-06-22T14:00:41,215 On the other hand, currently there is no concept of package data 2024-06-22T14:00:41,215 directory, all directories are treated like packages. 2024-06-22T14:00:41,216 ******************************************************************************** 2024-06-22T14:00:41,217 !! 2024-06-22T14:00:41,217 check.warn(importable) 2024-06-22T14:00:41,218 /tmp/pip-build-env-ye0gin6m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.spaceranger' is absent from the `packages` configuration. 2024-06-22T14:00:41,218 !! 2024-06-22T14:00:41,219 ******************************************************************************** 2024-06-22T14:00:41,220 ############################ 2024-06-22T14:00:41,220 # Package would be ignored # 2024-06-22T14:00:41,220 ############################ 2024-06-22T14:00:41,221 Python recognizes 'multiqc.modules.spaceranger' as an importable package[^1], 2024-06-22T14:00:41,221 but it is absent from setuptools' `packages` configuration. 2024-06-22T14:00:41,222 This leads to an ambiguous overall configuration. If you want to distribute this 2024-06-22T14:00:41,223 package, please make sure that 'multiqc.modules.spaceranger' is explicitly added 2024-06-22T14:00:41,223 to the `packages` configuration field. 2024-06-22T14:00:41,224 Alternatively, you can also rely on setuptools' discovery methods 2024-06-22T14:00:41,225 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-06-22T14:00:41,225 instead of `find_packages(...)`/`find:`). 2024-06-22T14:00:41,226 You can read more about "package discovery" on setuptools documentation page: 2024-06-22T14:00:41,227 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-06-22T14:00:41,228 If you don't want 'multiqc.modules.spaceranger' to be distributed and are 2024-06-22T14:00:41,228 already explicitly excluding 'multiqc.modules.spaceranger' via 2024-06-22T14:00:41,228 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-06-22T14:00:41,229 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-06-22T14:00:41,229 combination with a more fine grained `package-data` configuration. 2024-06-22T14:00:41,230 You can read more about "package data files" on setuptools documentation page: 2024-06-22T14:00:41,230 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-06-22T14:00:41,232 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-06-22T14:00:41,232 even if it does not contain any `.py` files. 2024-06-22T14:00:41,232 On the other hand, currently there is no concept of package data 2024-06-22T14:00:41,233 directory, all directories are treated like packages. 2024-06-22T14:00:41,233 ******************************************************************************** 2024-06-22T14:00:41,234 !! 2024-06-22T14:00:41,234 check.warn(importable) 2024-06-22T14:00:41,235 /tmp/pip-build-env-ye0gin6m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.stacks' is absent from the `packages` configuration. 2024-06-22T14:00:41,235 !! 2024-06-22T14:00:41,236 ******************************************************************************** 2024-06-22T14:00:41,236 ############################ 2024-06-22T14:00:41,237 # Package would be ignored # 2024-06-22T14:00:41,237 ############################ 2024-06-22T14:00:41,238 Python recognizes 'multiqc.modules.stacks' as an importable package[^1], 2024-06-22T14:00:41,238 but it is absent from setuptools' `packages` configuration. 2024-06-22T14:00:41,239 This leads to an ambiguous overall configuration. If you want to distribute this 2024-06-22T14:00:41,240 package, please make sure that 'multiqc.modules.stacks' is explicitly added 2024-06-22T14:00:41,240 to the `packages` configuration field. 2024-06-22T14:00:41,241 Alternatively, you can also rely on setuptools' discovery methods 2024-06-22T14:00:41,242 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-06-22T14:00:41,243 instead of `find_packages(...)`/`find:`). 2024-06-22T14:00:41,243 You can read more about "package discovery" on setuptools documentation page: 2024-06-22T14:00:41,244 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-06-22T14:00:41,245 If you don't want 'multiqc.modules.stacks' to be distributed and are 2024-06-22T14:00:41,246 already explicitly excluding 'multiqc.modules.stacks' via 2024-06-22T14:00:41,246 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-06-22T14:00:41,247 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-06-22T14:00:41,247 combination with a more fine grained `package-data` configuration. 2024-06-22T14:00:41,248 You can read more about "package data files" on setuptools documentation page: 2024-06-22T14:00:41,249 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-06-22T14:00:41,251 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-06-22T14:00:41,251 even if it does not contain any `.py` files. 2024-06-22T14:00:41,252 On the other hand, currently there is no concept of package data 2024-06-22T14:00:41,253 directory, all directories are treated like packages. 2024-06-22T14:00:41,253 ******************************************************************************** 2024-06-22T14:00:41,253 !! 2024-06-22T14:00:41,254 check.warn(importable) 2024-06-22T14:00:41,254 /tmp/pip-build-env-ye0gin6m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.star' is absent from the `packages` configuration. 2024-06-22T14:00:41,255 !! 2024-06-22T14:00:41,255 ******************************************************************************** 2024-06-22T14:00:41,256 ############################ 2024-06-22T14:00:41,256 # Package would be ignored # 2024-06-22T14:00:41,256 ############################ 2024-06-22T14:00:41,257 Python recognizes 'multiqc.modules.star' as an importable package[^1], 2024-06-22T14:00:41,257 but it is absent from setuptools' `packages` configuration. 2024-06-22T14:00:41,258 This leads to an ambiguous overall configuration. If you want to distribute this 2024-06-22T14:00:41,258 package, please make sure that 'multiqc.modules.star' is explicitly added 2024-06-22T14:00:41,258 to the `packages` configuration field. 2024-06-22T14:00:41,259 Alternatively, you can also rely on setuptools' discovery methods 2024-06-22T14:00:41,259 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-06-22T14:00:41,260 instead of `find_packages(...)`/`find:`). 2024-06-22T14:00:41,261 You can read more about "package discovery" on setuptools documentation page: 2024-06-22T14:00:41,262 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-06-22T14:00:41,263 If you don't want 'multiqc.modules.star' to be distributed and are 2024-06-22T14:00:41,263 already explicitly excluding 'multiqc.modules.star' via 2024-06-22T14:00:41,264 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-06-22T14:00:41,264 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-06-22T14:00:41,265 combination with a more fine grained `package-data` configuration. 2024-06-22T14:00:41,266 You can read more about "package data files" on setuptools documentation page: 2024-06-22T14:00:41,267 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-06-22T14:00:41,269 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-06-22T14:00:41,270 even if it does not contain any `.py` files. 2024-06-22T14:00:41,270 On the other hand, currently there is no concept of package data 2024-06-22T14:00:41,271 directory, all directories are treated like packages. 2024-06-22T14:00:41,271 ******************************************************************************** 2024-06-22T14:00:41,272 !! 2024-06-22T14:00:41,272 check.warn(importable) 2024-06-22T14:00:41,273 /tmp/pip-build-env-ye0gin6m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.supernova' is absent from the `packages` configuration. 2024-06-22T14:00:41,273 !! 2024-06-22T14:00:41,274 ******************************************************************************** 2024-06-22T14:00:41,275 ############################ 2024-06-22T14:00:41,275 # Package would be ignored # 2024-06-22T14:00:41,276 ############################ 2024-06-22T14:00:41,276 Python recognizes 'multiqc.modules.supernova' as an importable package[^1], 2024-06-22T14:00:41,277 but it is absent from setuptools' `packages` configuration. 2024-06-22T14:00:41,278 This leads to an ambiguous overall configuration. If you want to distribute this 2024-06-22T14:00:41,279 package, please make sure that 'multiqc.modules.supernova' is explicitly added 2024-06-22T14:00:41,279 to the `packages` configuration field. 2024-06-22T14:00:41,279 Alternatively, you can also rely on setuptools' discovery methods 2024-06-22T14:00:41,280 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-06-22T14:00:41,280 instead of `find_packages(...)`/`find:`). 2024-06-22T14:00:41,281 You can read more about "package discovery" on setuptools documentation page: 2024-06-22T14:00:41,282 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-06-22T14:00:41,282 If you don't want 'multiqc.modules.supernova' to be distributed and are 2024-06-22T14:00:41,283 already explicitly excluding 'multiqc.modules.supernova' via 2024-06-22T14:00:41,283 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-06-22T14:00:41,283 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-06-22T14:00:41,284 combination with a more fine grained `package-data` configuration. 2024-06-22T14:00:41,285 You can read more about "package data files" on setuptools documentation page: 2024-06-22T14:00:41,285 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-06-22T14:00:41,286 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-06-22T14:00:41,287 even if it does not contain any `.py` files. 2024-06-22T14:00:41,287 On the other hand, currently there is no concept of package data 2024-06-22T14:00:41,288 directory, all directories are treated like packages. 2024-06-22T14:00:41,288 ******************************************************************************** 2024-06-22T14:00:41,289 !! 2024-06-22T14:00:41,290 check.warn(importable) 2024-06-22T14:00:41,290 /tmp/pip-build-env-ye0gin6m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.theta2' is absent from the `packages` configuration. 2024-06-22T14:00:41,291 !! 2024-06-22T14:00:41,292 ******************************************************************************** 2024-06-22T14:00:41,293 ############################ 2024-06-22T14:00:41,293 # Package would be ignored # 2024-06-22T14:00:41,294 ############################ 2024-06-22T14:00:41,294 Python recognizes 'multiqc.modules.theta2' as an importable package[^1], 2024-06-22T14:00:41,295 but it is absent from setuptools' `packages` configuration. 2024-06-22T14:00:41,296 This leads to an ambiguous overall configuration. If you want to distribute this 2024-06-22T14:00:41,296 package, please make sure that 'multiqc.modules.theta2' is explicitly added 2024-06-22T14:00:41,297 to the `packages` configuration field. 2024-06-22T14:00:41,298 Alternatively, you can also rely on setuptools' discovery methods 2024-06-22T14:00:41,298 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-06-22T14:00:41,299 instead of `find_packages(...)`/`find:`). 2024-06-22T14:00:41,300 You can read more about "package discovery" on setuptools documentation page: 2024-06-22T14:00:41,300 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-06-22T14:00:41,302 If you don't want 'multiqc.modules.theta2' to be distributed and are 2024-06-22T14:00:41,302 already explicitly excluding 'multiqc.modules.theta2' via 2024-06-22T14:00:41,303 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-06-22T14:00:41,303 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-06-22T14:00:41,304 combination with a more fine grained `package-data` configuration. 2024-06-22T14:00:41,305 You can read more about "package data files" on setuptools documentation page: 2024-06-22T14:00:41,306 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-06-22T14:00:41,306 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-06-22T14:00:41,307 even if it does not contain any `.py` files. 2024-06-22T14:00:41,307 On the other hand, currently there is no concept of package data 2024-06-22T14:00:41,308 directory, all directories are treated like packages. 2024-06-22T14:00:41,308 ******************************************************************************** 2024-06-22T14:00:41,309 !! 2024-06-22T14:00:41,309 check.warn(importable) 2024-06-22T14:00:41,309 /tmp/pip-build-env-ye0gin6m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.tophat' is absent from the `packages` configuration. 2024-06-22T14:00:41,310 !! 2024-06-22T14:00:41,311 ******************************************************************************** 2024-06-22T14:00:41,311 ############################ 2024-06-22T14:00:41,311 # Package would be ignored # 2024-06-22T14:00:41,312 ############################ 2024-06-22T14:00:41,312 Python recognizes 'multiqc.modules.tophat' as an importable package[^1], 2024-06-22T14:00:41,313 but it is absent from setuptools' `packages` configuration. 2024-06-22T14:00:41,313 This leads to an ambiguous overall configuration. If you want to distribute this 2024-06-22T14:00:41,314 package, please make sure that 'multiqc.modules.tophat' is explicitly added 2024-06-22T14:00:41,314 to the `packages` configuration field. 2024-06-22T14:00:41,315 Alternatively, you can also rely on setuptools' discovery methods 2024-06-22T14:00:41,316 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-06-22T14:00:41,316 instead of `find_packages(...)`/`find:`). 2024-06-22T14:00:41,317 You can read more about "package discovery" on setuptools documentation page: 2024-06-22T14:00:41,318 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-06-22T14:00:41,319 If you don't want 'multiqc.modules.tophat' to be distributed and are 2024-06-22T14:00:41,319 already explicitly excluding 'multiqc.modules.tophat' via 2024-06-22T14:00:41,320 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-06-22T14:00:41,321 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-06-22T14:00:41,321 combination with a more fine grained `package-data` configuration. 2024-06-22T14:00:41,322 You can read more about "package data files" on setuptools documentation page: 2024-06-22T14:00:41,323 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-06-22T14:00:41,324 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-06-22T14:00:41,325 even if it does not contain any `.py` files. 2024-06-22T14:00:41,325 On the other hand, currently there is no concept of package data 2024-06-22T14:00:41,326 directory, all directories are treated like packages. 2024-06-22T14:00:41,326 ******************************************************************************** 2024-06-22T14:00:41,327 !! 2024-06-22T14:00:41,328 check.warn(importable) 2024-06-22T14:00:41,329 /tmp/pip-build-env-ye0gin6m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.trimmomatic' is absent from the `packages` configuration. 2024-06-22T14:00:41,329 !! 2024-06-22T14:00:41,330 ******************************************************************************** 2024-06-22T14:00:41,331 ############################ 2024-06-22T14:00:41,331 # Package would be ignored # 2024-06-22T14:00:41,331 ############################ 2024-06-22T14:00:41,332 Python recognizes 'multiqc.modules.trimmomatic' as an importable package[^1], 2024-06-22T14:00:41,332 but it is absent from setuptools' `packages` configuration. 2024-06-22T14:00:41,333 This leads to an ambiguous overall configuration. If you want to distribute this 2024-06-22T14:00:41,333 package, please make sure that 'multiqc.modules.trimmomatic' is explicitly added 2024-06-22T14:00:41,334 to the `packages` configuration field. 2024-06-22T14:00:41,334 Alternatively, you can also rely on setuptools' discovery methods 2024-06-22T14:00:41,335 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-06-22T14:00:41,335 instead of `find_packages(...)`/`find:`). 2024-06-22T14:00:41,336 You can read more about "package discovery" on setuptools documentation page: 2024-06-22T14:00:41,336 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-06-22T14:00:41,337 If you don't want 'multiqc.modules.trimmomatic' to be distributed and are 2024-06-22T14:00:41,337 already explicitly excluding 'multiqc.modules.trimmomatic' via 2024-06-22T14:00:41,338 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-06-22T14:00:41,338 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-06-22T14:00:41,339 combination with a more fine grained `package-data` configuration. 2024-06-22T14:00:41,340 You can read more about "package data files" on setuptools documentation page: 2024-06-22T14:00:41,341 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-06-22T14:00:41,343 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-06-22T14:00:41,344 even if it does not contain any `.py` files. 2024-06-22T14:00:41,344 On the other hand, currently there is no concept of package data 2024-06-22T14:00:41,345 directory, all directories are treated like packages. 2024-06-22T14:00:41,345 ******************************************************************************** 2024-06-22T14:00:41,346 !! 2024-06-22T14:00:41,347 check.warn(importable) 2024-06-22T14:00:41,347 /tmp/pip-build-env-ye0gin6m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.truvari' is absent from the `packages` configuration. 2024-06-22T14:00:41,348 !! 2024-06-22T14:00:41,349 ******************************************************************************** 2024-06-22T14:00:41,349 ############################ 2024-06-22T14:00:41,350 # Package would be ignored # 2024-06-22T14:00:41,350 ############################ 2024-06-22T14:00:41,351 Python recognizes 'multiqc.modules.truvari' as an importable package[^1], 2024-06-22T14:00:41,351 but it is absent from setuptools' `packages` configuration. 2024-06-22T14:00:41,352 This leads to an ambiguous overall configuration. If you want to distribute this 2024-06-22T14:00:41,352 package, please make sure that 'multiqc.modules.truvari' is explicitly added 2024-06-22T14:00:41,353 to the `packages` configuration field. 2024-06-22T14:00:41,354 Alternatively, you can also rely on setuptools' discovery methods 2024-06-22T14:00:41,354 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-06-22T14:00:41,355 instead of `find_packages(...)`/`find:`). 2024-06-22T14:00:41,356 You can read more about "package discovery" on setuptools documentation page: 2024-06-22T14:00:41,357 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-06-22T14:00:41,358 If you don't want 'multiqc.modules.truvari' to be distributed and are 2024-06-22T14:00:41,358 already explicitly excluding 'multiqc.modules.truvari' via 2024-06-22T14:00:41,359 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-06-22T14:00:41,359 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-06-22T14:00:41,360 combination with a more fine grained `package-data` configuration. 2024-06-22T14:00:41,360 You can read more about "package data files" on setuptools documentation page: 2024-06-22T14:00:41,361 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-06-22T14:00:41,362 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-06-22T14:00:41,363 even if it does not contain any `.py` files. 2024-06-22T14:00:41,363 On the other hand, currently there is no concept of package data 2024-06-22T14:00:41,363 directory, all directories are treated like packages. 2024-06-22T14:00:41,364 ******************************************************************************** 2024-06-22T14:00:41,364 !! 2024-06-22T14:00:41,365 check.warn(importable) 2024-06-22T14:00:41,365 /tmp/pip-build-env-ye0gin6m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.umitools' is absent from the `packages` configuration. 2024-06-22T14:00:41,366 !! 2024-06-22T14:00:41,366 ******************************************************************************** 2024-06-22T14:00:41,367 ############################ 2024-06-22T14:00:41,367 # Package would be ignored # 2024-06-22T14:00:41,368 ############################ 2024-06-22T14:00:41,368 Python recognizes 'multiqc.modules.umitools' as an importable package[^1], 2024-06-22T14:00:41,369 but it is absent from setuptools' `packages` configuration. 2024-06-22T14:00:41,370 This leads to an ambiguous overall configuration. If you want to distribute this 2024-06-22T14:00:41,370 package, please make sure that 'multiqc.modules.umitools' is explicitly added 2024-06-22T14:00:41,371 to the `packages` configuration field. 2024-06-22T14:00:41,372 Alternatively, you can also rely on setuptools' discovery methods 2024-06-22T14:00:41,373 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-06-22T14:00:41,373 instead of `find_packages(...)`/`find:`). 2024-06-22T14:00:41,375 You can read more about "package discovery" on setuptools documentation page: 2024-06-22T14:00:41,375 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-06-22T14:00:41,376 If you don't want 'multiqc.modules.umitools' to be distributed and are 2024-06-22T14:00:41,377 already explicitly excluding 'multiqc.modules.umitools' via 2024-06-22T14:00:41,377 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-06-22T14:00:41,378 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-06-22T14:00:41,378 combination with a more fine grained `package-data` configuration. 2024-06-22T14:00:41,379 You can read more about "package data files" on setuptools documentation page: 2024-06-22T14:00:41,380 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-06-22T14:00:41,381 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-06-22T14:00:41,382 even if it does not contain any `.py` files. 2024-06-22T14:00:41,382 On the other hand, currently there is no concept of package data 2024-06-22T14:00:41,383 directory, all directories are treated like packages. 2024-06-22T14:00:41,383 ******************************************************************************** 2024-06-22T14:00:41,385 !! 2024-06-22T14:00:41,385 check.warn(importable) 2024-06-22T14:00:41,385 /tmp/pip-build-env-ye0gin6m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.varscan2' is absent from the `packages` configuration. 2024-06-22T14:00:41,386 !! 2024-06-22T14:00:41,387 ******************************************************************************** 2024-06-22T14:00:41,387 ############################ 2024-06-22T14:00:41,387 # Package would be ignored # 2024-06-22T14:00:41,388 ############################ 2024-06-22T14:00:41,388 Python recognizes 'multiqc.modules.varscan2' as an importable package[^1], 2024-06-22T14:00:41,389 but it is absent from setuptools' `packages` configuration. 2024-06-22T14:00:41,389 This leads to an ambiguous overall configuration. If you want to distribute this 2024-06-22T14:00:41,390 package, please make sure that 'multiqc.modules.varscan2' is explicitly added 2024-06-22T14:00:41,390 to the `packages` configuration field. 2024-06-22T14:00:41,391 Alternatively, you can also rely on setuptools' discovery methods 2024-06-22T14:00:41,391 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-06-22T14:00:41,392 instead of `find_packages(...)`/`find:`). 2024-06-22T14:00:41,393 You can read more about "package discovery" on setuptools documentation page: 2024-06-22T14:00:41,393 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-06-22T14:00:41,394 If you don't want 'multiqc.modules.varscan2' to be distributed and are 2024-06-22T14:00:41,395 already explicitly excluding 'multiqc.modules.varscan2' via 2024-06-22T14:00:41,395 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-06-22T14:00:41,395 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-06-22T14:00:41,396 combination with a more fine grained `package-data` configuration. 2024-06-22T14:00:41,397 You can read more about "package data files" on setuptools documentation page: 2024-06-22T14:00:41,398 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-06-22T14:00:41,399 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-06-22T14:00:41,400 even if it does not contain any `.py` files. 2024-06-22T14:00:41,400 On the other hand, currently there is no concept of package data 2024-06-22T14:00:41,401 directory, all directories are treated like packages. 2024-06-22T14:00:41,401 ******************************************************************************** 2024-06-22T14:00:41,402 !! 2024-06-22T14:00:41,403 check.warn(importable) 2024-06-22T14:00:41,403 /tmp/pip-build-env-ye0gin6m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.vcftools' is absent from the `packages` configuration. 2024-06-22T14:00:41,404 !! 2024-06-22T14:00:41,405 ******************************************************************************** 2024-06-22T14:00:41,405 ############################ 2024-06-22T14:00:41,406 # Package would be ignored # 2024-06-22T14:00:41,406 ############################ 2024-06-22T14:00:41,407 Python recognizes 'multiqc.modules.vcftools' as an importable package[^1], 2024-06-22T14:00:41,407 but it is absent from setuptools' `packages` configuration. 2024-06-22T14:00:41,408 This leads to an ambiguous overall configuration. If you want to distribute this 2024-06-22T14:00:41,409 package, please make sure that 'multiqc.modules.vcftools' is explicitly added 2024-06-22T14:00:41,410 to the `packages` configuration field. 2024-06-22T14:00:41,411 Alternatively, you can also rely on setuptools' discovery methods 2024-06-22T14:00:41,411 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-06-22T14:00:41,411 instead of `find_packages(...)`/`find:`). 2024-06-22T14:00:41,412 You can read more about "package discovery" on setuptools documentation page: 2024-06-22T14:00:41,413 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-06-22T14:00:41,414 If you don't want 'multiqc.modules.vcftools' to be distributed and are 2024-06-22T14:00:41,416 already explicitly excluding 'multiqc.modules.vcftools' via 2024-06-22T14:00:41,417 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-06-22T14:00:41,417 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-06-22T14:00:41,418 combination with a more fine grained `package-data` configuration. 2024-06-22T14:00:41,418 You can read more about "package data files" on setuptools documentation page: 2024-06-22T14:00:41,419 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-06-22T14:00:41,420 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-06-22T14:00:41,420 even if it does not contain any `.py` files. 2024-06-22T14:00:41,421 On the other hand, currently there is no concept of package data 2024-06-22T14:00:41,421 directory, all directories are treated like packages. 2024-06-22T14:00:41,422 ******************************************************************************** 2024-06-22T14:00:41,423 !! 2024-06-22T14:00:41,423 check.warn(importable) 2024-06-22T14:00:41,423 /tmp/pip-build-env-ye0gin6m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.vep' is absent from the `packages` configuration. 2024-06-22T14:00:41,424 !! 2024-06-22T14:00:41,425 ******************************************************************************** 2024-06-22T14:00:41,425 ############################ 2024-06-22T14:00:41,426 # Package would be ignored # 2024-06-22T14:00:41,426 ############################ 2024-06-22T14:00:41,427 Python recognizes 'multiqc.modules.vep' as an importable package[^1], 2024-06-22T14:00:41,427 but it is absent from setuptools' `packages` configuration. 2024-06-22T14:00:41,428 This leads to an ambiguous overall configuration. If you want to distribute this 2024-06-22T14:00:41,429 package, please make sure that 'multiqc.modules.vep' is explicitly added 2024-06-22T14:00:41,429 to the `packages` configuration field. 2024-06-22T14:00:41,430 Alternatively, you can also rely on setuptools' discovery methods 2024-06-22T14:00:41,431 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-06-22T14:00:41,431 instead of `find_packages(...)`/`find:`). 2024-06-22T14:00:41,432 You can read more about "package discovery" on setuptools documentation page: 2024-06-22T14:00:41,433 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-06-22T14:00:41,434 If you don't want 'multiqc.modules.vep' to be distributed and are 2024-06-22T14:00:41,434 already explicitly excluding 'multiqc.modules.vep' via 2024-06-22T14:00:41,435 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-06-22T14:00:41,435 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-06-22T14:00:41,436 combination with a more fine grained `package-data` configuration. 2024-06-22T14:00:41,437 You can read more about "package data files" on setuptools documentation page: 2024-06-22T14:00:41,438 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-06-22T14:00:41,439 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-06-22T14:00:41,440 even if it does not contain any `.py` files. 2024-06-22T14:00:41,440 On the other hand, currently there is no concept of package data 2024-06-22T14:00:41,440 directory, all directories are treated like packages. 2024-06-22T14:00:41,441 ******************************************************************************** 2024-06-22T14:00:41,442 !! 2024-06-22T14:00:41,442 check.warn(importable) 2024-06-22T14:00:41,442 /tmp/pip-build-env-ye0gin6m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.verifybamid' is absent from the `packages` configuration. 2024-06-22T14:00:41,443 !! 2024-06-22T14:00:41,443 ******************************************************************************** 2024-06-22T14:00:41,444 ############################ 2024-06-22T14:00:41,444 # Package would be ignored # 2024-06-22T14:00:41,444 ############################ 2024-06-22T14:00:41,445 Python recognizes 'multiqc.modules.verifybamid' as an importable package[^1], 2024-06-22T14:00:41,445 but it is absent from setuptools' `packages` configuration. 2024-06-22T14:00:41,446 This leads to an ambiguous overall configuration. If you want to distribute this 2024-06-22T14:00:41,446 package, please make sure that 'multiqc.modules.verifybamid' is explicitly added 2024-06-22T14:00:41,447 to the `packages` configuration field. 2024-06-22T14:00:41,447 Alternatively, you can also rely on setuptools' discovery methods 2024-06-22T14:00:41,448 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-06-22T14:00:41,448 instead of `find_packages(...)`/`find:`). 2024-06-22T14:00:41,449 You can read more about "package discovery" on setuptools documentation page: 2024-06-22T14:00:41,451 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-06-22T14:00:41,452 If you don't want 'multiqc.modules.verifybamid' to be distributed and are 2024-06-22T14:00:41,452 already explicitly excluding 'multiqc.modules.verifybamid' via 2024-06-22T14:00:41,453 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-06-22T14:00:41,453 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-06-22T14:00:41,454 combination with a more fine grained `package-data` configuration. 2024-06-22T14:00:41,455 You can read more about "package data files" on setuptools documentation page: 2024-06-22T14:00:41,456 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-06-22T14:00:41,457 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-06-22T14:00:41,458 even if it does not contain any `.py` files. 2024-06-22T14:00:41,458 On the other hand, currently there is no concept of package data 2024-06-22T14:00:41,458 directory, all directories are treated like packages. 2024-06-22T14:00:41,459 ******************************************************************************** 2024-06-22T14:00:41,460 !! 2024-06-22T14:00:41,460 check.warn(importable) 2024-06-22T14:00:41,461 /tmp/pip-build-env-ye0gin6m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.whatshap' is absent from the `packages` configuration. 2024-06-22T14:00:41,461 !! 2024-06-22T14:00:41,462 ******************************************************************************** 2024-06-22T14:00:41,463 ############################ 2024-06-22T14:00:41,463 # Package would be ignored # 2024-06-22T14:00:41,464 ############################ 2024-06-22T14:00:41,464 Python recognizes 'multiqc.modules.whatshap' as an importable package[^1], 2024-06-22T14:00:41,465 but it is absent from setuptools' `packages` configuration. 2024-06-22T14:00:41,466 This leads to an ambiguous overall configuration. If you want to distribute this 2024-06-22T14:00:41,466 package, please make sure that 'multiqc.modules.whatshap' is explicitly added 2024-06-22T14:00:41,467 to the `packages` configuration field. 2024-06-22T14:00:41,467 Alternatively, you can also rely on setuptools' discovery methods 2024-06-22T14:00:41,468 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-06-22T14:00:41,468 instead of `find_packages(...)`/`find:`). 2024-06-22T14:00:41,469 You can read more about "package discovery" on setuptools documentation page: 2024-06-22T14:00:41,469 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-06-22T14:00:41,470 If you don't want 'multiqc.modules.whatshap' to be distributed and are 2024-06-22T14:00:41,470 already explicitly excluding 'multiqc.modules.whatshap' via 2024-06-22T14:00:41,471 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-06-22T14:00:41,471 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-06-22T14:00:41,471 combination with a more fine grained `package-data` configuration. 2024-06-22T14:00:41,472 You can read more about "package data files" on setuptools documentation page: 2024-06-22T14:00:41,473 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-06-22T14:00:41,475 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-06-22T14:00:41,475 even if it does not contain any `.py` files. 2024-06-22T14:00:41,476 On the other hand, currently there is no concept of package data 2024-06-22T14:00:41,476 directory, all directories are treated like packages. 2024-06-22T14:00:41,477 ******************************************************************************** 2024-06-22T14:00:41,478 !! 2024-06-22T14:00:41,478 check.warn(importable) 2024-06-22T14:00:41,479 /tmp/pip-build-env-ye0gin6m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.xengsort' is absent from the `packages` configuration. 2024-06-22T14:00:41,480 !! 2024-06-22T14:00:41,481 ******************************************************************************** 2024-06-22T14:00:41,481 ############################ 2024-06-22T14:00:41,482 # Package would be ignored # 2024-06-22T14:00:41,482 ############################ 2024-06-22T14:00:41,483 Python recognizes 'multiqc.modules.xengsort' as an importable package[^1], 2024-06-22T14:00:41,483 but it is absent from setuptools' `packages` configuration. 2024-06-22T14:00:41,484 This leads to an ambiguous overall configuration. If you want to distribute this 2024-06-22T14:00:41,485 package, please make sure that 'multiqc.modules.xengsort' is explicitly added 2024-06-22T14:00:41,485 to the `packages` configuration field. 2024-06-22T14:00:41,486 Alternatively, you can also rely on setuptools' discovery methods 2024-06-22T14:00:41,486 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-06-22T14:00:41,487 instead of `find_packages(...)`/`find:`). 2024-06-22T14:00:41,490 You can read more about "package discovery" on setuptools documentation page: 2024-06-22T14:00:41,491 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-06-22T14:00:41,492 If you don't want 'multiqc.modules.xengsort' to be distributed and are 2024-06-22T14:00:41,493 already explicitly excluding 'multiqc.modules.xengsort' via 2024-06-22T14:00:41,494 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-06-22T14:00:41,494 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-06-22T14:00:41,495 combination with a more fine grained `package-data` configuration. 2024-06-22T14:00:41,496 You can read more about "package data files" on setuptools documentation page: 2024-06-22T14:00:41,497 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-06-22T14:00:41,498 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-06-22T14:00:41,498 even if it does not contain any `.py` files. 2024-06-22T14:00:41,499 On the other hand, currently there is no concept of package data 2024-06-22T14:00:41,499 directory, all directories are treated like packages. 2024-06-22T14:00:41,499 ******************************************************************************** 2024-06-22T14:00:41,500 !! 2024-06-22T14:00:41,500 check.warn(importable) 2024-06-22T14:00:41,501 /tmp/pip-build-env-ye0gin6m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.xenome' is absent from the `packages` configuration. 2024-06-22T14:00:41,501 !! 2024-06-22T14:00:41,502 ******************************************************************************** 2024-06-22T14:00:41,502 ############################ 2024-06-22T14:00:41,503 # Package would be ignored # 2024-06-22T14:00:41,503 ############################ 2024-06-22T14:00:41,504 Python recognizes 'multiqc.modules.xenome' as an importable package[^1], 2024-06-22T14:00:41,504 but it is absent from setuptools' `packages` configuration. 2024-06-22T14:00:41,505 This leads to an ambiguous overall configuration. If you want to distribute this 2024-06-22T14:00:41,506 package, please make sure that 'multiqc.modules.xenome' is explicitly added 2024-06-22T14:00:41,506 to the `packages` configuration field. 2024-06-22T14:00:41,507 Alternatively, you can also rely on setuptools' discovery methods 2024-06-22T14:00:41,508 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-06-22T14:00:41,508 instead of `find_packages(...)`/`find:`). 2024-06-22T14:00:41,509 You can read more about "package discovery" on setuptools documentation page: 2024-06-22T14:00:41,511 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-06-22T14:00:41,512 If you don't want 'multiqc.modules.xenome' to be distributed and are 2024-06-22T14:00:41,513 already explicitly excluding 'multiqc.modules.xenome' via 2024-06-22T14:00:41,513 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-06-22T14:00:41,514 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-06-22T14:00:41,514 combination with a more fine grained `package-data` configuration. 2024-06-22T14:00:41,515 You can read more about "package data files" on setuptools documentation page: 2024-06-22T14:00:41,516 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-06-22T14:00:41,518 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-06-22T14:00:41,518 even if it does not contain any `.py` files. 2024-06-22T14:00:41,519 On the other hand, currently there is no concept of package data 2024-06-22T14:00:41,519 directory, all directories are treated like packages. 2024-06-22T14:00:41,520 ******************************************************************************** 2024-06-22T14:00:41,521 !! 2024-06-22T14:00:41,521 check.warn(importable) 2024-06-22T14:00:41,522 /tmp/pip-build-env-ye0gin6m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.plots' is absent from the `packages` configuration. 2024-06-22T14:00:41,523 !! 2024-06-22T14:00:41,524 ******************************************************************************** 2024-06-22T14:00:41,525 ############################ 2024-06-22T14:00:41,525 # Package would be ignored # 2024-06-22T14:00:41,526 ############################ 2024-06-22T14:00:41,526 Python recognizes 'multiqc.plots' as an importable package[^1], 2024-06-22T14:00:41,526 but it is absent from setuptools' `packages` configuration. 2024-06-22T14:00:41,527 This leads to an ambiguous overall configuration. If you want to distribute this 2024-06-22T14:00:41,528 package, please make sure that 'multiqc.plots' is explicitly added 2024-06-22T14:00:41,528 to the `packages` configuration field. 2024-06-22T14:00:41,529 Alternatively, you can also rely on setuptools' discovery methods 2024-06-22T14:00:41,529 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-06-22T14:00:41,530 instead of `find_packages(...)`/`find:`). 2024-06-22T14:00:41,531 You can read more about "package discovery" on setuptools documentation page: 2024-06-22T14:00:41,531 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-06-22T14:00:41,532 If you don't want 'multiqc.plots' to be distributed and are 2024-06-22T14:00:41,533 already explicitly excluding 'multiqc.plots' via 2024-06-22T14:00:41,533 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-06-22T14:00:41,534 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-06-22T14:00:41,535 combination with a more fine grained `package-data` configuration. 2024-06-22T14:00:41,536 You can read more about "package data files" on setuptools documentation page: 2024-06-22T14:00:41,537 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-06-22T14:00:41,539 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-06-22T14:00:41,539 even if it does not contain any `.py` files. 2024-06-22T14:00:41,539 On the other hand, currently there is no concept of package data 2024-06-22T14:00:41,540 directory, all directories are treated like packages. 2024-06-22T14:00:41,540 ******************************************************************************** 2024-06-22T14:00:41,541 !! 2024-06-22T14:00:41,542 check.warn(importable) 2024-06-22T14:00:41,543 /tmp/pip-build-env-ye0gin6m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.plots.plotly' is absent from the `packages` configuration. 2024-06-22T14:00:41,543 !! 2024-06-22T14:00:41,544 ******************************************************************************** 2024-06-22T14:00:41,545 ############################ 2024-06-22T14:00:41,546 # Package would be ignored # 2024-06-22T14:00:41,546 ############################ 2024-06-22T14:00:41,547 Python recognizes 'multiqc.plots.plotly' as an importable package[^1], 2024-06-22T14:00:41,547 but it is absent from setuptools' `packages` configuration. 2024-06-22T14:00:41,548 This leads to an ambiguous overall configuration. If you want to distribute this 2024-06-22T14:00:41,549 package, please make sure that 'multiqc.plots.plotly' is explicitly added 2024-06-22T14:00:41,550 to the `packages` configuration field. 2024-06-22T14:00:41,551 Alternatively, you can also rely on setuptools' discovery methods 2024-06-22T14:00:41,551 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-06-22T14:00:41,552 instead of `find_packages(...)`/`find:`). 2024-06-22T14:00:41,553 You can read more about "package discovery" on setuptools documentation page: 2024-06-22T14:00:41,555 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-06-22T14:00:41,556 If you don't want 'multiqc.plots.plotly' to be distributed and are 2024-06-22T14:00:41,556 already explicitly excluding 'multiqc.plots.plotly' via 2024-06-22T14:00:41,556 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-06-22T14:00:41,557 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-06-22T14:00:41,557 combination with a more fine grained `package-data` configuration. 2024-06-22T14:00:41,558 You can read more about "package data files" on setuptools documentation page: 2024-06-22T14:00:41,559 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-06-22T14:00:41,561 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-06-22T14:00:41,561 even if it does not contain any `.py` files. 2024-06-22T14:00:41,562 On the other hand, currently there is no concept of package data 2024-06-22T14:00:41,562 directory, all directories are treated like packages. 2024-06-22T14:00:41,563 ******************************************************************************** 2024-06-22T14:00:41,564 !! 2024-06-22T14:00:41,564 check.warn(importable) 2024-06-22T14:00:41,565 /tmp/pip-build-env-ye0gin6m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.templates' is absent from the `packages` configuration. 2024-06-22T14:00:41,565 !! 2024-06-22T14:00:41,566 ******************************************************************************** 2024-06-22T14:00:41,567 ############################ 2024-06-22T14:00:41,567 # Package would be ignored # 2024-06-22T14:00:41,568 ############################ 2024-06-22T14:00:41,568 Python recognizes 'multiqc.templates' as an importable package[^1], 2024-06-22T14:00:41,569 but it is absent from setuptools' `packages` configuration. 2024-06-22T14:00:41,570 This leads to an ambiguous overall configuration. If you want to distribute this 2024-06-22T14:00:41,570 package, please make sure that 'multiqc.templates' is explicitly added 2024-06-22T14:00:41,571 to the `packages` configuration field. 2024-06-22T14:00:41,572 Alternatively, you can also rely on setuptools' discovery methods 2024-06-22T14:00:41,573 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-06-22T14:00:41,573 instead of `find_packages(...)`/`find:`). 2024-06-22T14:00:41,574 You can read more about "package discovery" on setuptools documentation page: 2024-06-22T14:00:41,575 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-06-22T14:00:41,577 If you don't want 'multiqc.templates' to be distributed and are 2024-06-22T14:00:41,577 already explicitly excluding 'multiqc.templates' via 2024-06-22T14:00:41,578 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-06-22T14:00:41,578 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-06-22T14:00:41,579 combination with a more fine grained `package-data` configuration. 2024-06-22T14:00:41,580 You can read more about "package data files" on setuptools documentation page: 2024-06-22T14:00:41,581 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-06-22T14:00:41,583 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-06-22T14:00:41,583 even if it does not contain any `.py` files. 2024-06-22T14:00:41,584 On the other hand, currently there is no concept of package data 2024-06-22T14:00:41,584 directory, all directories are treated like packages. 2024-06-22T14:00:41,585 ******************************************************************************** 2024-06-22T14:00:41,586 !! 2024-06-22T14:00:41,587 check.warn(importable) 2024-06-22T14:00:41,587 /tmp/pip-build-env-ye0gin6m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.templates.default' is absent from the `packages` configuration. 2024-06-22T14:00:41,587 !! 2024-06-22T14:00:41,588 ******************************************************************************** 2024-06-22T14:00:41,589 ############################ 2024-06-22T14:00:41,589 # Package would be ignored # 2024-06-22T14:00:41,590 ############################ 2024-06-22T14:00:41,590 Python recognizes 'multiqc.templates.default' as an importable package[^1], 2024-06-22T14:00:41,591 but it is absent from setuptools' `packages` configuration. 2024-06-22T14:00:41,592 This leads to an ambiguous overall configuration. If you want to distribute this 2024-06-22T14:00:41,592 package, please make sure that 'multiqc.templates.default' is explicitly added 2024-06-22T14:00:41,593 to the `packages` configuration field. 2024-06-22T14:00:41,594 Alternatively, you can also rely on setuptools' discovery methods 2024-06-22T14:00:41,594 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-06-22T14:00:41,595 instead of `find_packages(...)`/`find:`). 2024-06-22T14:00:41,596 You can read more about "package discovery" on setuptools documentation page: 2024-06-22T14:00:41,597 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-06-22T14:00:41,598 If you don't want 'multiqc.templates.default' to be distributed and are 2024-06-22T14:00:41,598 already explicitly excluding 'multiqc.templates.default' via 2024-06-22T14:00:41,599 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-06-22T14:00:41,599 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-06-22T14:00:41,600 combination with a more fine grained `package-data` configuration. 2024-06-22T14:00:41,601 You can read more about "package data files" on setuptools documentation page: 2024-06-22T14:00:41,602 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-06-22T14:00:41,604 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-06-22T14:00:41,604 even if it does not contain any `.py` files. 2024-06-22T14:00:41,605 On the other hand, currently there is no concept of package data 2024-06-22T14:00:41,605 directory, all directories are treated like packages. 2024-06-22T14:00:41,606 ******************************************************************************** 2024-06-22T14:00:41,608 !! 2024-06-22T14:00:41,608 check.warn(importable) 2024-06-22T14:00:41,609 /tmp/pip-build-env-ye0gin6m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.templates.default.assets.css' is absent from the `packages` configuration. 2024-06-22T14:00:41,610 !! 2024-06-22T14:00:41,611 ******************************************************************************** 2024-06-22T14:00:41,612 ############################ 2024-06-22T14:00:41,613 # Package would be ignored # 2024-06-22T14:00:41,613 ############################ 2024-06-22T14:00:41,614 Python recognizes 'multiqc.templates.default.assets.css' as an importable package[^1], 2024-06-22T14:00:41,615 but it is absent from setuptools' `packages` configuration. 2024-06-22T14:00:41,616 This leads to an ambiguous overall configuration. If you want to distribute this 2024-06-22T14:00:41,617 package, please make sure that 'multiqc.templates.default.assets.css' is explicitly added 2024-06-22T14:00:41,617 to the `packages` configuration field. 2024-06-22T14:00:41,619 Alternatively, you can also rely on setuptools' discovery methods 2024-06-22T14:00:41,619 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-06-22T14:00:41,620 instead of `find_packages(...)`/`find:`). 2024-06-22T14:00:41,622 You can read more about "package discovery" on setuptools documentation page: 2024-06-22T14:00:41,623 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-06-22T14:00:41,624 If you don't want 'multiqc.templates.default.assets.css' to be distributed and are 2024-06-22T14:00:41,625 already explicitly excluding 'multiqc.templates.default.assets.css' via 2024-06-22T14:00:41,625 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-06-22T14:00:41,626 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-06-22T14:00:41,626 combination with a more fine grained `package-data` configuration. 2024-06-22T14:00:41,628 You can read more about "package data files" on setuptools documentation page: 2024-06-22T14:00:41,629 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-06-22T14:00:41,630 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-06-22T14:00:41,631 even if it does not contain any `.py` files. 2024-06-22T14:00:41,632 On the other hand, currently there is no concept of package data 2024-06-22T14:00:41,632 directory, all directories are treated like packages. 2024-06-22T14:00:41,633 ******************************************************************************** 2024-06-22T14:00:41,634 !! 2024-06-22T14:00:41,635 check.warn(importable) 2024-06-22T14:00:41,635 /tmp/pip-build-env-ye0gin6m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.templates.default.assets.fonts' is absent from the `packages` configuration. 2024-06-22T14:00:41,636 !! 2024-06-22T14:00:41,637 ******************************************************************************** 2024-06-22T14:00:41,638 ############################ 2024-06-22T14:00:41,638 # Package would be ignored # 2024-06-22T14:00:41,639 ############################ 2024-06-22T14:00:41,639 Python recognizes 'multiqc.templates.default.assets.fonts' as an importable package[^1], 2024-06-22T14:00:41,640 but it is absent from setuptools' `packages` configuration. 2024-06-22T14:00:41,641 This leads to an ambiguous overall configuration. If you want to distribute this 2024-06-22T14:00:41,642 package, please make sure that 'multiqc.templates.default.assets.fonts' is explicitly added 2024-06-22T14:00:41,643 to the `packages` configuration field. 2024-06-22T14:00:41,644 Alternatively, you can also rely on setuptools' discovery methods 2024-06-22T14:00:41,645 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-06-22T14:00:41,645 instead of `find_packages(...)`/`find:`). 2024-06-22T14:00:41,646 You can read more about "package discovery" on setuptools documentation page: 2024-06-22T14:00:41,648 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-06-22T14:00:41,649 If you don't want 'multiqc.templates.default.assets.fonts' to be distributed and are 2024-06-22T14:00:41,650 already explicitly excluding 'multiqc.templates.default.assets.fonts' via 2024-06-22T14:00:41,650 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-06-22T14:00:41,651 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-06-22T14:00:41,652 combination with a more fine grained `package-data` configuration. 2024-06-22T14:00:41,653 You can read more about "package data files" on setuptools documentation page: 2024-06-22T14:00:41,655 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-06-22T14:00:41,657 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-06-22T14:00:41,657 even if it does not contain any `.py` files. 2024-06-22T14:00:41,658 On the other hand, currently there is no concept of package data 2024-06-22T14:00:41,658 directory, all directories are treated like packages. 2024-06-22T14:00:41,659 ******************************************************************************** 2024-06-22T14:00:41,660 !! 2024-06-22T14:00:41,661 check.warn(importable) 2024-06-22T14:00:41,661 /tmp/pip-build-env-ye0gin6m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.templates.default.assets.img' is absent from the `packages` configuration. 2024-06-22T14:00:41,662 !! 2024-06-22T14:00:41,663 ******************************************************************************** 2024-06-22T14:00:41,663 ############################ 2024-06-22T14:00:41,664 # Package would be ignored # 2024-06-22T14:00:41,665 ############################ 2024-06-22T14:00:41,665 Python recognizes 'multiqc.templates.default.assets.img' as an importable package[^1], 2024-06-22T14:00:41,666 but it is absent from setuptools' `packages` configuration. 2024-06-22T14:00:41,667 This leads to an ambiguous overall configuration. If you want to distribute this 2024-06-22T14:00:41,668 package, please make sure that 'multiqc.templates.default.assets.img' is explicitly added 2024-06-22T14:00:41,669 to the `packages` configuration field. 2024-06-22T14:00:41,670 Alternatively, you can also rely on setuptools' discovery methods 2024-06-22T14:00:41,671 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-06-22T14:00:41,672 instead of `find_packages(...)`/`find:`). 2024-06-22T14:00:41,673 You can read more about "package discovery" on setuptools documentation page: 2024-06-22T14:00:41,674 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-06-22T14:00:41,675 If you don't want 'multiqc.templates.default.assets.img' to be distributed and are 2024-06-22T14:00:41,676 already explicitly excluding 'multiqc.templates.default.assets.img' via 2024-06-22T14:00:41,676 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-06-22T14:00:41,677 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-06-22T14:00:41,677 combination with a more fine grained `package-data` configuration. 2024-06-22T14:00:41,679 You can read more about "package data files" on setuptools documentation page: 2024-06-22T14:00:41,680 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-06-22T14:00:41,682 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-06-22T14:00:41,683 even if it does not contain any `.py` files. 2024-06-22T14:00:41,683 On the other hand, currently there is no concept of package data 2024-06-22T14:00:41,684 directory, all directories are treated like packages. 2024-06-22T14:00:41,684 ******************************************************************************** 2024-06-22T14:00:41,686 !! 2024-06-22T14:00:41,687 check.warn(importable) 2024-06-22T14:00:41,687 /tmp/pip-build-env-ye0gin6m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.templates.default.assets.js' is absent from the `packages` configuration. 2024-06-22T14:00:41,688 !! 2024-06-22T14:00:41,689 ******************************************************************************** 2024-06-22T14:00:41,690 ############################ 2024-06-22T14:00:41,691 # Package would be ignored # 2024-06-22T14:00:41,692 ############################ 2024-06-22T14:00:41,692 Python recognizes 'multiqc.templates.default.assets.js' as an importable package[^1], 2024-06-22T14:00:41,693 but it is absent from setuptools' `packages` configuration. 2024-06-22T14:00:41,694 This leads to an ambiguous overall configuration. If you want to distribute this 2024-06-22T14:00:41,695 package, please make sure that 'multiqc.templates.default.assets.js' is explicitly added 2024-06-22T14:00:41,695 to the `packages` configuration field. 2024-06-22T14:00:41,696 Alternatively, you can also rely on setuptools' discovery methods 2024-06-22T14:00:41,697 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-06-22T14:00:41,698 instead of `find_packages(...)`/`find:`). 2024-06-22T14:00:41,699 You can read more about "package discovery" on setuptools documentation page: 2024-06-22T14:00:41,700 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-06-22T14:00:41,701 If you don't want 'multiqc.templates.default.assets.js' to be distributed and are 2024-06-22T14:00:41,702 already explicitly excluding 'multiqc.templates.default.assets.js' via 2024-06-22T14:00:41,702 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-06-22T14:00:41,703 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-06-22T14:00:41,703 combination with a more fine grained `package-data` configuration. 2024-06-22T14:00:41,704 You can read more about "package data files" on setuptools documentation page: 2024-06-22T14:00:41,705 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-06-22T14:00:41,707 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-06-22T14:00:41,707 even if it does not contain any `.py` files. 2024-06-22T14:00:41,708 On the other hand, currently there is no concept of package data 2024-06-22T14:00:41,708 directory, all directories are treated like packages. 2024-06-22T14:00:41,709 ******************************************************************************** 2024-06-22T14:00:41,710 !! 2024-06-22T14:00:41,710 check.warn(importable) 2024-06-22T14:00:41,711 /tmp/pip-build-env-ye0gin6m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.templates.default.assets.js.packages' is absent from the `packages` configuration. 2024-06-22T14:00:41,712 !! 2024-06-22T14:00:41,713 ******************************************************************************** 2024-06-22T14:00:41,713 ############################ 2024-06-22T14:00:41,714 # Package would be ignored # 2024-06-22T14:00:41,714 ############################ 2024-06-22T14:00:41,715 Python recognizes 'multiqc.templates.default.assets.js.packages' as an importable package[^1], 2024-06-22T14:00:41,716 but it is absent from setuptools' `packages` configuration. 2024-06-22T14:00:41,717 This leads to an ambiguous overall configuration. If you want to distribute this 2024-06-22T14:00:41,717 package, please make sure that 'multiqc.templates.default.assets.js.packages' is explicitly added 2024-06-22T14:00:41,718 to the `packages` configuration field. 2024-06-22T14:00:41,719 Alternatively, you can also rely on setuptools' discovery methods 2024-06-22T14:00:41,719 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-06-22T14:00:41,720 instead of `find_packages(...)`/`find:`). 2024-06-22T14:00:41,721 You can read more about "package discovery" on setuptools documentation page: 2024-06-22T14:00:41,722 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-06-22T14:00:41,723 If you don't want 'multiqc.templates.default.assets.js.packages' to be distributed and are 2024-06-22T14:00:41,724 already explicitly excluding 'multiqc.templates.default.assets.js.packages' via 2024-06-22T14:00:41,724 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-06-22T14:00:41,724 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-06-22T14:00:41,725 combination with a more fine grained `package-data` configuration. 2024-06-22T14:00:41,726 You can read more about "package data files" on setuptools documentation page: 2024-06-22T14:00:41,726 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-06-22T14:00:41,728 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-06-22T14:00:41,728 even if it does not contain any `.py` files. 2024-06-22T14:00:41,728 On the other hand, currently there is no concept of package data 2024-06-22T14:00:41,729 directory, all directories are treated like packages. 2024-06-22T14:00:41,729 ******************************************************************************** 2024-06-22T14:00:41,730 !! 2024-06-22T14:00:41,731 check.warn(importable) 2024-06-22T14:00:41,731 /tmp/pip-build-env-ye0gin6m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.templates.default.assets.js.plots' is absent from the `packages` configuration. 2024-06-22T14:00:41,731 !! 2024-06-22T14:00:41,732 ******************************************************************************** 2024-06-22T14:00:41,733 ############################ 2024-06-22T14:00:41,733 # Package would be ignored # 2024-06-22T14:00:41,734 ############################ 2024-06-22T14:00:41,734 Python recognizes 'multiqc.templates.default.assets.js.plots' as an importable package[^1], 2024-06-22T14:00:41,735 but it is absent from setuptools' `packages` configuration. 2024-06-22T14:00:41,736 This leads to an ambiguous overall configuration. If you want to distribute this 2024-06-22T14:00:41,736 package, please make sure that 'multiqc.templates.default.assets.js.plots' is explicitly added 2024-06-22T14:00:41,737 to the `packages` configuration field. 2024-06-22T14:00:41,738 Alternatively, you can also rely on setuptools' discovery methods 2024-06-22T14:00:41,738 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-06-22T14:00:41,739 instead of `find_packages(...)`/`find:`). 2024-06-22T14:00:41,740 You can read more about "package discovery" on setuptools documentation page: 2024-06-22T14:00:41,741 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-06-22T14:00:41,742 If you don't want 'multiqc.templates.default.assets.js.plots' to be distributed and are 2024-06-22T14:00:41,742 already explicitly excluding 'multiqc.templates.default.assets.js.plots' via 2024-06-22T14:00:41,743 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-06-22T14:00:41,743 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-06-22T14:00:41,744 combination with a more fine grained `package-data` configuration. 2024-06-22T14:00:41,745 You can read more about "package data files" on setuptools documentation page: 2024-06-22T14:00:41,746 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-06-22T14:00:41,747 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-06-22T14:00:41,748 even if it does not contain any `.py` files. 2024-06-22T14:00:41,748 On the other hand, currently there is no concept of package data 2024-06-22T14:00:41,749 directory, all directories are treated like packages. 2024-06-22T14:00:41,750 ******************************************************************************** 2024-06-22T14:00:41,751 !! 2024-06-22T14:00:41,751 check.warn(importable) 2024-06-22T14:00:41,751 /tmp/pip-build-env-ye0gin6m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.templates.gathered' is absent from the `packages` configuration. 2024-06-22T14:00:41,752 !! 2024-06-22T14:00:41,753 ******************************************************************************** 2024-06-22T14:00:41,753 ############################ 2024-06-22T14:00:41,754 # Package would be ignored # 2024-06-22T14:00:41,754 ############################ 2024-06-22T14:00:41,754 Python recognizes 'multiqc.templates.gathered' as an importable package[^1], 2024-06-22T14:00:41,755 but it is absent from setuptools' `packages` configuration. 2024-06-22T14:00:41,756 This leads to an ambiguous overall configuration. If you want to distribute this 2024-06-22T14:00:41,756 package, please make sure that 'multiqc.templates.gathered' is explicitly added 2024-06-22T14:00:41,757 to the `packages` configuration field. 2024-06-22T14:00:41,757 Alternatively, you can also rely on setuptools' discovery methods 2024-06-22T14:00:41,758 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-06-22T14:00:41,758 instead of `find_packages(...)`/`find:`). 2024-06-22T14:00:41,759 You can read more about "package discovery" on setuptools documentation page: 2024-06-22T14:00:41,760 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-06-22T14:00:41,761 If you don't want 'multiqc.templates.gathered' to be distributed and are 2024-06-22T14:00:41,762 already explicitly excluding 'multiqc.templates.gathered' via 2024-06-22T14:00:41,762 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-06-22T14:00:41,762 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-06-22T14:00:41,763 combination with a more fine grained `package-data` configuration. 2024-06-22T14:00:41,764 You can read more about "package data files" on setuptools documentation page: 2024-06-22T14:00:41,765 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-06-22T14:00:41,766 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-06-22T14:00:41,767 even if it does not contain any `.py` files. 2024-06-22T14:00:41,767 On the other hand, currently there is no concept of package data 2024-06-22T14:00:41,768 directory, all directories are treated like packages. 2024-06-22T14:00:41,768 ******************************************************************************** 2024-06-22T14:00:41,769 !! 2024-06-22T14:00:41,770 check.warn(importable) 2024-06-22T14:00:41,770 /tmp/pip-build-env-ye0gin6m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.templates.geo' is absent from the `packages` configuration. 2024-06-22T14:00:41,771 !! 2024-06-22T14:00:41,772 ******************************************************************************** 2024-06-22T14:00:41,772 ############################ 2024-06-22T14:00:41,773 # Package would be ignored # 2024-06-22T14:00:41,773 ############################ 2024-06-22T14:00:41,774 Python recognizes 'multiqc.templates.geo' as an importable package[^1], 2024-06-22T14:00:41,775 but it is absent from setuptools' `packages` configuration. 2024-06-22T14:00:41,776 This leads to an ambiguous overall configuration. If you want to distribute this 2024-06-22T14:00:41,776 package, please make sure that 'multiqc.templates.geo' is explicitly added 2024-06-22T14:00:41,777 to the `packages` configuration field. 2024-06-22T14:00:41,778 Alternatively, you can also rely on setuptools' discovery methods 2024-06-22T14:00:41,778 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-06-22T14:00:41,778 instead of `find_packages(...)`/`find:`). 2024-06-22T14:00:41,779 You can read more about "package discovery" on setuptools documentation page: 2024-06-22T14:00:41,780 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-06-22T14:00:41,781 If you don't want 'multiqc.templates.geo' to be distributed and are 2024-06-22T14:00:41,781 already explicitly excluding 'multiqc.templates.geo' via 2024-06-22T14:00:41,782 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-06-22T14:00:41,783 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-06-22T14:00:41,783 combination with a more fine grained `package-data` configuration. 2024-06-22T14:00:41,784 You can read more about "package data files" on setuptools documentation page: 2024-06-22T14:00:41,785 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-06-22T14:00:41,786 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-06-22T14:00:41,786 even if it does not contain any `.py` files. 2024-06-22T14:00:41,787 On the other hand, currently there is no concept of package data 2024-06-22T14:00:41,787 directory, all directories are treated like packages. 2024-06-22T14:00:41,788 ******************************************************************************** 2024-06-22T14:00:41,789 !! 2024-06-22T14:00:41,789 check.warn(importable) 2024-06-22T14:00:41,790 /tmp/pip-build-env-ye0gin6m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.templates.geo.assets.css' is absent from the `packages` configuration. 2024-06-22T14:00:41,791 !! 2024-06-22T14:00:41,792 ******************************************************************************** 2024-06-22T14:00:41,792 ############################ 2024-06-22T14:00:41,793 # Package would be ignored # 2024-06-22T14:00:41,794 ############################ 2024-06-22T14:00:41,794 Python recognizes 'multiqc.templates.geo.assets.css' as an importable package[^1], 2024-06-22T14:00:41,795 but it is absent from setuptools' `packages` configuration. 2024-06-22T14:00:41,796 This leads to an ambiguous overall configuration. If you want to distribute this 2024-06-22T14:00:41,796 package, please make sure that 'multiqc.templates.geo.assets.css' is explicitly added 2024-06-22T14:00:41,797 to the `packages` configuration field. 2024-06-22T14:00:41,798 Alternatively, you can also rely on setuptools' discovery methods 2024-06-22T14:00:41,798 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-06-22T14:00:41,799 instead of `find_packages(...)`/`find:`). 2024-06-22T14:00:41,800 You can read more about "package discovery" on setuptools documentation page: 2024-06-22T14:00:41,801 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-06-22T14:00:41,802 If you don't want 'multiqc.templates.geo.assets.css' to be distributed and are 2024-06-22T14:00:41,803 already explicitly excluding 'multiqc.templates.geo.assets.css' via 2024-06-22T14:00:41,803 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-06-22T14:00:41,803 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-06-22T14:00:41,804 combination with a more fine grained `package-data` configuration. 2024-06-22T14:00:41,805 You can read more about "package data files" on setuptools documentation page: 2024-06-22T14:00:41,806 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-06-22T14:00:41,807 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-06-22T14:00:41,808 even if it does not contain any `.py` files. 2024-06-22T14:00:41,808 On the other hand, currently there is no concept of package data 2024-06-22T14:00:41,809 directory, all directories are treated like packages. 2024-06-22T14:00:41,809 ******************************************************************************** 2024-06-22T14:00:41,810 !! 2024-06-22T14:00:41,811 check.warn(importable) 2024-06-22T14:00:41,811 /tmp/pip-build-env-ye0gin6m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.templates.geo.assets.img' is absent from the `packages` configuration. 2024-06-22T14:00:41,812 !! 2024-06-22T14:00:41,813 ******************************************************************************** 2024-06-22T14:00:41,813 ############################ 2024-06-22T14:00:41,813 # Package would be ignored # 2024-06-22T14:00:41,814 ############################ 2024-06-22T14:00:41,814 Python recognizes 'multiqc.templates.geo.assets.img' as an importable package[^1], 2024-06-22T14:00:41,815 but it is absent from setuptools' `packages` configuration. 2024-06-22T14:00:41,816 This leads to an ambiguous overall configuration. If you want to distribute this 2024-06-22T14:00:41,816 package, please make sure that 'multiqc.templates.geo.assets.img' is explicitly added 2024-06-22T14:00:41,817 to the `packages` configuration field. 2024-06-22T14:00:41,818 Alternatively, you can also rely on setuptools' discovery methods 2024-06-22T14:00:41,818 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-06-22T14:00:41,819 instead of `find_packages(...)`/`find:`). 2024-06-22T14:00:41,820 You can read more about "package discovery" on setuptools documentation page: 2024-06-22T14:00:41,821 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-06-22T14:00:41,822 If you don't want 'multiqc.templates.geo.assets.img' to be distributed and are 2024-06-22T14:00:41,822 already explicitly excluding 'multiqc.templates.geo.assets.img' via 2024-06-22T14:00:41,823 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-06-22T14:00:41,823 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-06-22T14:00:41,824 combination with a more fine grained `package-data` configuration. 2024-06-22T14:00:41,825 You can read more about "package data files" on setuptools documentation page: 2024-06-22T14:00:41,826 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-06-22T14:00:41,828 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-06-22T14:00:41,828 even if it does not contain any `.py` files. 2024-06-22T14:00:41,829 On the other hand, currently there is no concept of package data 2024-06-22T14:00:41,829 directory, all directories are treated like packages. 2024-06-22T14:00:41,830 ******************************************************************************** 2024-06-22T14:00:41,831 !! 2024-06-22T14:00:41,831 check.warn(importable) 2024-06-22T14:00:41,832 /tmp/pip-build-env-ye0gin6m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.templates.sections' is absent from the `packages` configuration. 2024-06-22T14:00:41,832 !! 2024-06-22T14:00:41,833 ******************************************************************************** 2024-06-22T14:00:41,834 ############################ 2024-06-22T14:00:41,835 # Package would be ignored # 2024-06-22T14:00:41,835 ############################ 2024-06-22T14:00:41,836 Python recognizes 'multiqc.templates.sections' as an importable package[^1], 2024-06-22T14:00:41,836 but it is absent from setuptools' `packages` configuration. 2024-06-22T14:00:41,837 This leads to an ambiguous overall configuration. If you want to distribute this 2024-06-22T14:00:41,837 package, please make sure that 'multiqc.templates.sections' is explicitly added 2024-06-22T14:00:41,838 to the `packages` configuration field. 2024-06-22T14:00:41,838 Alternatively, you can also rely on setuptools' discovery methods 2024-06-22T14:00:41,839 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-06-22T14:00:41,839 instead of `find_packages(...)`/`find:`). 2024-06-22T14:00:41,840 You can read more about "package discovery" on setuptools documentation page: 2024-06-22T14:00:41,841 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-06-22T14:00:41,842 If you don't want 'multiqc.templates.sections' to be distributed and are 2024-06-22T14:00:41,843 already explicitly excluding 'multiqc.templates.sections' via 2024-06-22T14:00:41,843 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-06-22T14:00:41,843 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-06-22T14:00:41,844 combination with a more fine grained `package-data` configuration. 2024-06-22T14:00:41,845 You can read more about "package data files" on setuptools documentation page: 2024-06-22T14:00:41,846 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-06-22T14:00:41,847 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-06-22T14:00:41,848 even if it does not contain any `.py` files. 2024-06-22T14:00:41,848 On the other hand, currently there is no concept of package data 2024-06-22T14:00:41,849 directory, all directories are treated like packages. 2024-06-22T14:00:41,849 ******************************************************************************** 2024-06-22T14:00:41,850 !! 2024-06-22T14:00:41,851 check.warn(importable) 2024-06-22T14:00:41,851 /tmp/pip-build-env-ye0gin6m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.templates.simple' is absent from the `packages` configuration. 2024-06-22T14:00:41,852 !! 2024-06-22T14:00:41,853 ******************************************************************************** 2024-06-22T14:00:41,854 ############################ 2024-06-22T14:00:41,854 # Package would be ignored # 2024-06-22T14:00:41,854 ############################ 2024-06-22T14:00:41,855 Python recognizes 'multiqc.templates.simple' as an importable package[^1], 2024-06-22T14:00:41,855 but it is absent from setuptools' `packages` configuration. 2024-06-22T14:00:41,856 This leads to an ambiguous overall configuration. If you want to distribute this 2024-06-22T14:00:41,857 package, please make sure that 'multiqc.templates.simple' is explicitly added 2024-06-22T14:00:41,857 to the `packages` configuration field. 2024-06-22T14:00:41,858 Alternatively, you can also rely on setuptools' discovery methods 2024-06-22T14:00:41,859 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-06-22T14:00:41,859 instead of `find_packages(...)`/`find:`). 2024-06-22T14:00:41,860 You can read more about "package discovery" on setuptools documentation page: 2024-06-22T14:00:41,861 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-06-22T14:00:41,862 If you don't want 'multiqc.templates.simple' to be distributed and are 2024-06-22T14:00:41,863 already explicitly excluding 'multiqc.templates.simple' via 2024-06-22T14:00:41,863 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-06-22T14:00:41,864 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-06-22T14:00:41,864 combination with a more fine grained `package-data` configuration. 2024-06-22T14:00:41,865 You can read more about "package data files" on setuptools documentation page: 2024-06-22T14:00:41,866 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-06-22T14:00:41,867 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-06-22T14:00:41,867 even if it does not contain any `.py` files. 2024-06-22T14:00:41,868 On the other hand, currently there is no concept of package data 2024-06-22T14:00:41,868 directory, all directories are treated like packages. 2024-06-22T14:00:41,869 ******************************************************************************** 2024-06-22T14:00:41,870 !! 2024-06-22T14:00:41,870 check.warn(importable) 2024-06-22T14:00:41,870 /tmp/pip-build-env-ye0gin6m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.utils' is absent from the `packages` configuration. 2024-06-22T14:00:41,871 !! 2024-06-22T14:00:41,872 ******************************************************************************** 2024-06-22T14:00:41,872 ############################ 2024-06-22T14:00:41,873 # Package would be ignored # 2024-06-22T14:00:41,873 ############################ 2024-06-22T14:00:41,874 Python recognizes 'multiqc.utils' as an importable package[^1], 2024-06-22T14:00:41,874 but it is absent from setuptools' `packages` configuration. 2024-06-22T14:00:41,875 This leads to an ambiguous overall configuration. If you want to distribute this 2024-06-22T14:00:41,875 package, please make sure that 'multiqc.utils' is explicitly added 2024-06-22T14:00:41,876 to the `packages` configuration field. 2024-06-22T14:00:41,877 Alternatively, you can also rely on setuptools' discovery methods 2024-06-22T14:00:41,877 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-06-22T14:00:41,878 instead of `find_packages(...)`/`find:`). 2024-06-22T14:00:41,879 You can read more about "package discovery" on setuptools documentation page: 2024-06-22T14:00:41,880 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-06-22T14:00:41,881 If you don't want 'multiqc.utils' to be distributed and are 2024-06-22T14:00:41,882 already explicitly excluding 'multiqc.utils' via 2024-06-22T14:00:41,882 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-06-22T14:00:41,883 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-06-22T14:00:41,883 combination with a more fine grained `package-data` configuration. 2024-06-22T14:00:41,885 You can read more about "package data files" on setuptools documentation page: 2024-06-22T14:00:41,886 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-06-22T14:00:41,887 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-06-22T14:00:41,888 even if it does not contain any `.py` files. 2024-06-22T14:00:41,888 On the other hand, currently there is no concept of package data 2024-06-22T14:00:41,889 directory, all directories are treated like packages. 2024-06-22T14:00:41,889 ******************************************************************************** 2024-06-22T14:00:41,890 !! 2024-06-22T14:00:41,891 check.warn(importable) 2024-06-22T14:00:41,891 copying multiqc/config_defaults.yaml -> build/lib/multiqc 2024-06-22T14:00:41,891 copying multiqc/search_patterns.yaml -> build/lib/multiqc 2024-06-22T14:00:41,892 creating build/lib/multiqc/core 2024-06-22T14:00:41,892 copying multiqc/core/__init__.py -> build/lib/multiqc/core 2024-06-22T14:00:41,893 copying multiqc/core/exceptions.py -> build/lib/multiqc/core 2024-06-22T14:00:41,893 copying multiqc/core/exec_modules.py -> build/lib/multiqc/core 2024-06-22T14:00:41,894 copying multiqc/core/file_search.py -> build/lib/multiqc/core 2024-06-22T14:00:41,894 copying multiqc/core/init_log.py -> build/lib/multiqc/core 2024-06-22T14:00:41,894 copying multiqc/core/plugin_hooks.py -> build/lib/multiqc/core 2024-06-22T14:00:41,895 copying multiqc/core/software_versions.py -> build/lib/multiqc/core 2024-06-22T14:00:41,895 copying multiqc/core/strict_helpers.py -> build/lib/multiqc/core 2024-06-22T14:00:41,896 copying multiqc/core/update_config.py -> build/lib/multiqc/core 2024-06-22T14:00:41,896 copying multiqc/core/version_check.py -> build/lib/multiqc/core 2024-06-22T14:00:41,897 copying multiqc/core/write_results.py -> build/lib/multiqc/core 2024-06-22T14:00:41,897 creating build/lib/multiqc/modules 2024-06-22T14:00:41,898 copying multiqc/modules/__init__.py -> build/lib/multiqc/modules 2024-06-22T14:00:41,898 copying multiqc/modules/profile_runtime.py -> build/lib/multiqc/modules 2024-06-22T14:00:41,899 copying multiqc/modules/software_versions.py -> build/lib/multiqc/modules 2024-06-22T14:00:41,899 creating build/lib/multiqc/modules/adapterremoval 2024-06-22T14:00:41,900 copying multiqc/modules/adapterremoval/__init__.py -> build/lib/multiqc/modules/adapterremoval 2024-06-22T14:00:41,900 copying multiqc/modules/adapterremoval/adapterremoval.py -> build/lib/multiqc/modules/adapterremoval 2024-06-22T14:00:41,901 creating build/lib/multiqc/modules/afterqc 2024-06-22T14:00:41,902 copying multiqc/modules/afterqc/__init__.py -> build/lib/multiqc/modules/afterqc 2024-06-22T14:00:41,902 copying multiqc/modules/afterqc/afterqc.py -> build/lib/multiqc/modules/afterqc 2024-06-22T14:00:41,903 creating build/lib/multiqc/modules/anglerfish 2024-06-22T14:00:41,904 copying multiqc/modules/anglerfish/__init__.py -> build/lib/multiqc/modules/anglerfish 2024-06-22T14:00:41,904 copying multiqc/modules/anglerfish/anglerfish.py -> build/lib/multiqc/modules/anglerfish 2024-06-22T14:00:41,905 creating build/lib/multiqc/modules/bakta 2024-06-22T14:00:41,905 copying multiqc/modules/bakta/__init__.py -> build/lib/multiqc/modules/bakta 2024-06-22T14:00:41,906 copying multiqc/modules/bakta/bakta.py -> build/lib/multiqc/modules/bakta 2024-06-22T14:00:41,906 creating build/lib/multiqc/modules/bamdst 2024-06-22T14:00:41,907 copying multiqc/modules/bamdst/__init__.py -> build/lib/multiqc/modules/bamdst 2024-06-22T14:00:41,908 copying multiqc/modules/bamdst/bamdst.py -> build/lib/multiqc/modules/bamdst 2024-06-22T14:00:41,908 creating build/lib/multiqc/modules/bamtools 2024-06-22T14:00:41,909 copying multiqc/modules/bamtools/__init__.py -> build/lib/multiqc/modules/bamtools 2024-06-22T14:00:41,910 copying multiqc/modules/bamtools/bamtools.py -> build/lib/multiqc/modules/bamtools 2024-06-22T14:00:41,910 copying multiqc/modules/bamtools/stats.py -> build/lib/multiqc/modules/bamtools 2024-06-22T14:00:41,911 creating build/lib/multiqc/modules/bbduk 2024-06-22T14:00:41,912 copying multiqc/modules/bbduk/__init__.py -> build/lib/multiqc/modules/bbduk 2024-06-22T14:00:41,912 copying multiqc/modules/bbduk/bbduk.py -> build/lib/multiqc/modules/bbduk 2024-06-22T14:00:41,913 creating build/lib/multiqc/modules/bbmap 2024-06-22T14:00:41,913 copying multiqc/modules/bbmap/__init__.py -> build/lib/multiqc/modules/bbmap 2024-06-22T14:00:41,914 copying multiqc/modules/bbmap/bbmap.py -> build/lib/multiqc/modules/bbmap 2024-06-22T14:00:41,915 copying multiqc/modules/bbmap/bbmap_filetypes.py -> build/lib/multiqc/modules/bbmap 2024-06-22T14:00:41,915 copying multiqc/modules/bbmap/plot_aqhist.py -> build/lib/multiqc/modules/bbmap 2024-06-22T14:00:41,916 copying multiqc/modules/bbmap/plot_basic_hist.py -> build/lib/multiqc/modules/bbmap 2024-06-22T14:00:41,916 copying multiqc/modules/bbmap/plot_bhist.py -> build/lib/multiqc/modules/bbmap 2024-06-22T14:00:41,917 copying multiqc/modules/bbmap/plot_bqhist.py -> build/lib/multiqc/modules/bbmap 2024-06-22T14:00:41,917 copying multiqc/modules/bbmap/plot_covhist.py -> build/lib/multiqc/modules/bbmap 2024-06-22T14:00:41,918 copying multiqc/modules/bbmap/plot_idhist.py -> build/lib/multiqc/modules/bbmap 2024-06-22T14:00:41,918 copying multiqc/modules/bbmap/plot_ihist.py -> build/lib/multiqc/modules/bbmap 2024-06-22T14:00:41,919 copying multiqc/modules/bbmap/plot_indelhist.py -> build/lib/multiqc/modules/bbmap 2024-06-22T14:00:41,919 copying multiqc/modules/bbmap/plot_mhist.py -> build/lib/multiqc/modules/bbmap 2024-06-22T14:00:41,920 copying multiqc/modules/bbmap/plot_qahist.py -> build/lib/multiqc/modules/bbmap 2024-06-22T14:00:41,920 copying multiqc/modules/bbmap/plot_qchist.py -> build/lib/multiqc/modules/bbmap 2024-06-22T14:00:41,921 copying multiqc/modules/bbmap/plot_qhist.py -> build/lib/multiqc/modules/bbmap 2024-06-22T14:00:41,922 creating build/lib/multiqc/modules/bcftools 2024-06-22T14:00:41,922 copying multiqc/modules/bcftools/__init__.py -> build/lib/multiqc/modules/bcftools 2024-06-22T14:00:41,923 copying multiqc/modules/bcftools/bcftools.py -> build/lib/multiqc/modules/bcftools 2024-06-22T14:00:41,923 copying multiqc/modules/bcftools/stats.py -> build/lib/multiqc/modules/bcftools 2024-06-22T14:00:41,924 creating build/lib/multiqc/modules/bcl2fastq 2024-06-22T14:00:41,925 copying multiqc/modules/bcl2fastq/__init__.py -> build/lib/multiqc/modules/bcl2fastq 2024-06-22T14:00:41,925 copying multiqc/modules/bcl2fastq/bcl2fastq.py -> build/lib/multiqc/modules/bcl2fastq 2024-06-22T14:00:41,926 creating build/lib/multiqc/modules/bclconvert 2024-06-22T14:00:41,927 copying multiqc/modules/bclconvert/__init__.py -> build/lib/multiqc/modules/bclconvert 2024-06-22T14:00:41,927 copying multiqc/modules/bclconvert/bclconvert.py -> build/lib/multiqc/modules/bclconvert 2024-06-22T14:00:41,928 creating build/lib/multiqc/modules/biobambam2 2024-06-22T14:00:41,929 copying multiqc/modules/biobambam2/__init__.py -> build/lib/multiqc/modules/biobambam2 2024-06-22T14:00:41,929 copying multiqc/modules/biobambam2/biobambam2.py -> build/lib/multiqc/modules/biobambam2 2024-06-22T14:00:41,930 creating build/lib/multiqc/modules/biobloomtools 2024-06-22T14:00:41,931 copying multiqc/modules/biobloomtools/__init__.py -> build/lib/multiqc/modules/biobloomtools 2024-06-22T14:00:41,931 copying multiqc/modules/biobloomtools/biobloomtools.py -> build/lib/multiqc/modules/biobloomtools 2024-06-22T14:00:41,932 creating build/lib/multiqc/modules/biscuit 2024-06-22T14:00:41,932 copying multiqc/modules/biscuit/__init__.py -> build/lib/multiqc/modules/biscuit 2024-06-22T14:00:41,933 copying multiqc/modules/biscuit/biscuit.py -> build/lib/multiqc/modules/biscuit 2024-06-22T14:00:41,934 creating build/lib/multiqc/modules/bismark 2024-06-22T14:00:41,934 copying multiqc/modules/bismark/__init__.py -> build/lib/multiqc/modules/bismark 2024-06-22T14:00:41,935 copying multiqc/modules/bismark/bismark.py -> build/lib/multiqc/modules/bismark 2024-06-22T14:00:41,935 creating build/lib/multiqc/modules/bowtie1 2024-06-22T14:00:41,936 copying multiqc/modules/bowtie1/__init__.py -> build/lib/multiqc/modules/bowtie1 2024-06-22T14:00:41,937 copying multiqc/modules/bowtie1/bowtie1.py -> build/lib/multiqc/modules/bowtie1 2024-06-22T14:00:41,937 creating build/lib/multiqc/modules/bowtie2 2024-06-22T14:00:41,938 copying multiqc/modules/bowtie2/__init__.py -> build/lib/multiqc/modules/bowtie2 2024-06-22T14:00:41,938 copying multiqc/modules/bowtie2/bowtie2.py -> build/lib/multiqc/modules/bowtie2 2024-06-22T14:00:41,939 creating build/lib/multiqc/modules/bracken 2024-06-22T14:00:41,940 copying multiqc/modules/bracken/__init__.py -> build/lib/multiqc/modules/bracken 2024-06-22T14:00:41,941 copying multiqc/modules/bracken/bracken.py -> build/lib/multiqc/modules/bracken 2024-06-22T14:00:41,941 creating build/lib/multiqc/modules/busco 2024-06-22T14:00:41,942 copying multiqc/modules/busco/__init__.py -> build/lib/multiqc/modules/busco 2024-06-22T14:00:41,942 copying multiqc/modules/busco/busco.py -> build/lib/multiqc/modules/busco 2024-06-22T14:00:41,943 creating build/lib/multiqc/modules/bustools 2024-06-22T14:00:41,943 copying multiqc/modules/bustools/__init__.py -> build/lib/multiqc/modules/bustools 2024-06-22T14:00:41,944 copying multiqc/modules/bustools/bustools.py -> build/lib/multiqc/modules/bustools 2024-06-22T14:00:41,944 creating build/lib/multiqc/modules/ccs 2024-06-22T14:00:41,945 copying multiqc/modules/ccs/__init__.py -> build/lib/multiqc/modules/ccs 2024-06-22T14:00:41,946 copying multiqc/modules/ccs/ccs.py -> build/lib/multiqc/modules/ccs 2024-06-22T14:00:41,946 creating build/lib/multiqc/modules/ccs/tests 2024-06-22T14:00:41,947 copying multiqc/modules/ccs/tests/__init__.py -> build/lib/multiqc/modules/ccs/tests 2024-06-22T14:00:41,947 copying multiqc/modules/ccs/tests/test_ccs.py -> build/lib/multiqc/modules/ccs/tests 2024-06-22T14:00:41,948 creating build/lib/multiqc/modules/cellranger 2024-06-22T14:00:41,948 copying multiqc/modules/cellranger/__init__.py -> build/lib/multiqc/modules/cellranger 2024-06-22T14:00:41,949 copying multiqc/modules/cellranger/cellranger.py -> build/lib/multiqc/modules/cellranger 2024-06-22T14:00:41,949 copying multiqc/modules/cellranger/count.py -> build/lib/multiqc/modules/cellranger 2024-06-22T14:00:41,950 copying multiqc/modules/cellranger/utils.py -> build/lib/multiqc/modules/cellranger 2024-06-22T14:00:41,951 copying multiqc/modules/cellranger/vdj.py -> build/lib/multiqc/modules/cellranger 2024-06-22T14:00:41,951 creating build/lib/multiqc/modules/checkqc 2024-06-22T14:00:41,952 copying multiqc/modules/checkqc/__init__.py -> build/lib/multiqc/modules/checkqc 2024-06-22T14:00:41,952 copying multiqc/modules/checkqc/checkqc.py -> build/lib/multiqc/modules/checkqc 2024-06-22T14:00:41,953 creating build/lib/multiqc/modules/clipandmerge 2024-06-22T14:00:41,953 copying multiqc/modules/clipandmerge/__init__.py -> build/lib/multiqc/modules/clipandmerge 2024-06-22T14:00:41,954 copying multiqc/modules/clipandmerge/clipandmerge.py -> build/lib/multiqc/modules/clipandmerge 2024-06-22T14:00:41,955 creating build/lib/multiqc/modules/clusterflow 2024-06-22T14:00:41,956 copying multiqc/modules/clusterflow/__init__.py -> build/lib/multiqc/modules/clusterflow 2024-06-22T14:00:41,956 copying multiqc/modules/clusterflow/clusterflow.py -> build/lib/multiqc/modules/clusterflow 2024-06-22T14:00:41,957 creating build/lib/multiqc/modules/conpair 2024-06-22T14:00:41,957 copying multiqc/modules/conpair/__init__.py -> build/lib/multiqc/modules/conpair 2024-06-22T14:00:41,958 copying multiqc/modules/conpair/conpair.py -> build/lib/multiqc/modules/conpair 2024-06-22T14:00:41,958 creating build/lib/multiqc/modules/custom_content 2024-06-22T14:00:41,959 copying multiqc/modules/custom_content/__init__.py -> build/lib/multiqc/modules/custom_content 2024-06-22T14:00:41,959 copying multiqc/modules/custom_content/custom_content.py -> build/lib/multiqc/modules/custom_content 2024-06-22T14:00:41,960 creating build/lib/multiqc/modules/cutadapt 2024-06-22T14:00:41,960 copying multiqc/modules/cutadapt/__init__.py -> build/lib/multiqc/modules/cutadapt 2024-06-22T14:00:41,961 copying multiqc/modules/cutadapt/cutadapt.py -> build/lib/multiqc/modules/cutadapt 2024-06-22T14:00:41,962 creating build/lib/multiqc/modules/damageprofiler 2024-06-22T14:00:41,962 copying multiqc/modules/damageprofiler/__init__.py -> build/lib/multiqc/modules/damageprofiler 2024-06-22T14:00:41,963 copying multiqc/modules/damageprofiler/damageprofiler.py -> build/lib/multiqc/modules/damageprofiler 2024-06-22T14:00:41,963 creating build/lib/multiqc/modules/dedup 2024-06-22T14:00:41,964 copying multiqc/modules/dedup/__init__.py -> build/lib/multiqc/modules/dedup 2024-06-22T14:00:41,964 copying multiqc/modules/dedup/dedup.py -> build/lib/multiqc/modules/dedup 2024-06-22T14:00:41,965 creating build/lib/multiqc/modules/deeptools 2024-06-22T14:00:41,965 copying multiqc/modules/deeptools/__init__.py -> build/lib/multiqc/modules/deeptools 2024-06-22T14:00:41,966 copying multiqc/modules/deeptools/bamPEFragmentSizeDistribution.py -> build/lib/multiqc/modules/deeptools 2024-06-22T14:00:41,966 copying multiqc/modules/deeptools/bamPEFragmentSizeTable.py -> build/lib/multiqc/modules/deeptools 2024-06-22T14:00:41,967 copying multiqc/modules/deeptools/deeptools.py -> build/lib/multiqc/modules/deeptools 2024-06-22T14:00:41,967 copying multiqc/modules/deeptools/estimateReadFiltering.py -> build/lib/multiqc/modules/deeptools 2024-06-22T14:00:41,968 copying multiqc/modules/deeptools/plotCorrelation.py -> build/lib/multiqc/modules/deeptools 2024-06-22T14:00:41,968 copying multiqc/modules/deeptools/plotCoverage.py -> build/lib/multiqc/modules/deeptools 2024-06-22T14:00:41,969 copying multiqc/modules/deeptools/plotEnrichment.py -> build/lib/multiqc/modules/deeptools 2024-06-22T14:00:41,969 copying multiqc/modules/deeptools/plotFingerprint.py -> build/lib/multiqc/modules/deeptools 2024-06-22T14:00:41,970 copying multiqc/modules/deeptools/plotPCA.py -> build/lib/multiqc/modules/deeptools 2024-06-22T14:00:41,970 copying multiqc/modules/deeptools/plotProfile.py -> build/lib/multiqc/modules/deeptools 2024-06-22T14:00:41,971 creating build/lib/multiqc/modules/diamond 2024-06-22T14:00:41,971 copying multiqc/modules/diamond/__init__.py -> build/lib/multiqc/modules/diamond 2024-06-22T14:00:41,972 copying multiqc/modules/diamond/diamond.py -> build/lib/multiqc/modules/diamond 2024-06-22T14:00:41,972 creating build/lib/multiqc/modules/disambiguate 2024-06-22T14:00:41,973 copying multiqc/modules/disambiguate/__init__.py -> build/lib/multiqc/modules/disambiguate 2024-06-22T14:00:41,973 copying multiqc/modules/disambiguate/disambiguate.py -> build/lib/multiqc/modules/disambiguate 2024-06-22T14:00:41,974 creating build/lib/multiqc/modules/dragen 2024-06-22T14:00:41,974 copying multiqc/modules/dragen/__init__.py -> build/lib/multiqc/modules/dragen 2024-06-22T14:00:41,975 copying multiqc/modules/dragen/coverage_hist.py -> build/lib/multiqc/modules/dragen 2024-06-22T14:00:41,975 copying multiqc/modules/dragen/coverage_metrics.py -> build/lib/multiqc/modules/dragen 2024-06-22T14:00:41,976 copying multiqc/modules/dragen/coverage_per_contig.py -> build/lib/multiqc/modules/dragen 2024-06-22T14:00:41,976 copying multiqc/modules/dragen/dragen.py -> build/lib/multiqc/modules/dragen 2024-06-22T14:00:41,977 copying multiqc/modules/dragen/dragen_gc_metrics.py -> build/lib/multiqc/modules/dragen 2024-06-22T14:00:41,977 copying multiqc/modules/dragen/fragment_length.py -> build/lib/multiqc/modules/dragen 2024-06-22T14:00:41,978 copying multiqc/modules/dragen/mapping_metrics.py -> build/lib/multiqc/modules/dragen 2024-06-22T14:00:41,978 copying multiqc/modules/dragen/overall_mean_cov.py -> build/lib/multiqc/modules/dragen 2024-06-22T14:00:41,979 copying multiqc/modules/dragen/ploidy_estimation_metrics.py -> build/lib/multiqc/modules/dragen 2024-06-22T14:00:41,980 copying multiqc/modules/dragen/rna_quant_metrics.py -> build/lib/multiqc/modules/dragen 2024-06-22T14:00:41,980 copying multiqc/modules/dragen/rna_transcript_cov.py -> build/lib/multiqc/modules/dragen 2024-06-22T14:00:41,981 copying multiqc/modules/dragen/sc_atac_metrics.py -> build/lib/multiqc/modules/dragen 2024-06-22T14:00:41,981 copying multiqc/modules/dragen/sc_rna_metrics.py -> build/lib/multiqc/modules/dragen 2024-06-22T14:00:41,983 copying multiqc/modules/dragen/time_metrics.py -> build/lib/multiqc/modules/dragen 2024-06-22T14:00:41,983 copying multiqc/modules/dragen/trimmer_metrics.py -> build/lib/multiqc/modules/dragen 2024-06-22T14:00:41,984 copying multiqc/modules/dragen/utils.py -> build/lib/multiqc/modules/dragen 2024-06-22T14:00:41,985 copying multiqc/modules/dragen/vc_metrics.py -> build/lib/multiqc/modules/dragen 2024-06-22T14:00:41,985 creating build/lib/multiqc/modules/dragen/tests 2024-06-22T14:00:41,986 copying multiqc/modules/dragen/tests/__init__.py -> build/lib/multiqc/modules/dragen/tests 2024-06-22T14:00:41,986 copying multiqc/modules/dragen/tests/test_dragen.py -> build/lib/multiqc/modules/dragen/tests 2024-06-22T14:00:41,987 creating build/lib/multiqc/modules/dragen_fastqc 2024-06-22T14:00:41,987 copying multiqc/modules/dragen_fastqc/__init__.py -> build/lib/multiqc/modules/dragen_fastqc 2024-06-22T14:00:41,987 copying multiqc/modules/dragen_fastqc/base_metrics.py -> build/lib/multiqc/modules/dragen_fastqc 2024-06-22T14:00:41,988 copying multiqc/modules/dragen_fastqc/content_metrics.py -> build/lib/multiqc/modules/dragen_fastqc 2024-06-22T14:00:41,988 copying multiqc/modules/dragen_fastqc/dragen_fastqc.py -> build/lib/multiqc/modules/dragen_fastqc 2024-06-22T14:00:41,989 copying multiqc/modules/dragen_fastqc/gc_metrics.py -> build/lib/multiqc/modules/dragen_fastqc 2024-06-22T14:00:41,989 copying multiqc/modules/dragen_fastqc/read_metrics.py -> build/lib/multiqc/modules/dragen_fastqc 2024-06-22T14:00:41,990 copying multiqc/modules/dragen_fastqc/util.py -> build/lib/multiqc/modules/dragen_fastqc 2024-06-22T14:00:41,991 creating build/lib/multiqc/modules/dragen_fastqc/assets 2024-06-22T14:00:41,991 creating build/lib/multiqc/modules/dragen_fastqc/assets/js 2024-06-22T14:00:41,992 copying multiqc/modules/dragen_fastqc/assets/js/multiqc_dragen_fastqc.js -> build/lib/multiqc/modules/dragen_fastqc/assets/js 2024-06-22T14:00:41,992 creating build/lib/multiqc/modules/eigenstratdatabasetools 2024-06-22T14:00:41,993 copying multiqc/modules/eigenstratdatabasetools/__init__.py -> build/lib/multiqc/modules/eigenstratdatabasetools 2024-06-22T14:00:41,993 copying multiqc/modules/eigenstratdatabasetools/eigenstratdatabasetools.py -> build/lib/multiqc/modules/eigenstratdatabasetools 2024-06-22T14:00:41,994 creating build/lib/multiqc/modules/fastp 2024-06-22T14:00:41,994 copying multiqc/modules/fastp/__init__.py -> build/lib/multiqc/modules/fastp 2024-06-22T14:00:41,995 copying multiqc/modules/fastp/fastp.py -> build/lib/multiqc/modules/fastp 2024-06-22T14:00:41,995 creating build/lib/multiqc/modules/fastq_screen 2024-06-22T14:00:41,996 copying multiqc/modules/fastq_screen/__init__.py -> build/lib/multiqc/modules/fastq_screen 2024-06-22T14:00:41,996 copying multiqc/modules/fastq_screen/fastq_screen.py -> build/lib/multiqc/modules/fastq_screen 2024-06-22T14:00:41,997 creating build/lib/multiqc/modules/fastqc 2024-06-22T14:00:41,997 copying multiqc/modules/fastqc/__init__.py -> build/lib/multiqc/modules/fastqc 2024-06-22T14:00:41,998 copying multiqc/modules/fastqc/fastqc.py -> build/lib/multiqc/modules/fastqc 2024-06-22T14:00:41,998 creating build/lib/multiqc/modules/fastqc/assets 2024-06-22T14:00:41,999 creating build/lib/multiqc/modules/fastqc/assets/css 2024-06-22T14:00:41,999 copying multiqc/modules/fastqc/assets/css/multiqc_fastqc.css -> build/lib/multiqc/modules/fastqc/assets/css 2024-06-22T14:00:42,000 creating build/lib/multiqc/modules/fastqc/assets/js 2024-06-22T14:00:42,000 copying multiqc/modules/fastqc/assets/js/multiqc_fastqc.js -> build/lib/multiqc/modules/fastqc/assets/js 2024-06-22T14:00:42,001 creating build/lib/multiqc/modules/fastqc/fastqc_theoretical_gc 2024-06-22T14:00:42,002 copying multiqc/modules/fastqc/fastqc_theoretical_gc/fastqc_theoretical_gc_hg38_genome.txt -> build/lib/multiqc/modules/fastqc/fastqc_theoretical_gc 2024-06-22T14:00:42,002 copying multiqc/modules/fastqc/fastqc_theoretical_gc/fastqc_theoretical_gc_hg38_txome.txt -> build/lib/multiqc/modules/fastqc/fastqc_theoretical_gc 2024-06-22T14:00:42,003 copying multiqc/modules/fastqc/fastqc_theoretical_gc/fastqc_theoretical_gc_mm10_genome.txt -> build/lib/multiqc/modules/fastqc/fastqc_theoretical_gc 2024-06-22T14:00:42,003 copying multiqc/modules/fastqc/fastqc_theoretical_gc/fastqc_theoretical_gc_mm10_txome.txt -> build/lib/multiqc/modules/fastqc/fastqc_theoretical_gc 2024-06-22T14:00:42,004 creating build/lib/multiqc/modules/featureCounts 2024-06-22T14:00:42,005 copying multiqc/modules/featureCounts/__init__.py -> build/lib/multiqc/modules/featureCounts 2024-06-22T14:00:42,006 copying multiqc/modules/featureCounts/feature_counts.py -> build/lib/multiqc/modules/featureCounts 2024-06-22T14:00:42,008 creating build/lib/multiqc/modules/fgbio 2024-06-22T14:00:42,009 copying multiqc/modules/fgbio/ErrorRateByReadPosition.py -> build/lib/multiqc/modules/fgbio 2024-06-22T14:00:42,011 copying multiqc/modules/fgbio/__init__.py -> build/lib/multiqc/modules/fgbio 2024-06-22T14:00:42,014 copying multiqc/modules/fgbio/fgbio.py -> build/lib/multiqc/modules/fgbio 2024-06-22T14:00:42,015 copying multiqc/modules/fgbio/groupreadsbyumi.py -> build/lib/multiqc/modules/fgbio 2024-06-22T14:00:42,017 creating build/lib/multiqc/modules/filtlong 2024-06-22T14:00:42,018 copying multiqc/modules/filtlong/__init__.py -> build/lib/multiqc/modules/filtlong 2024-06-22T14:00:42,020 copying multiqc/modules/filtlong/filtlong.py -> build/lib/multiqc/modules/filtlong 2024-06-22T14:00:42,022 creating build/lib/multiqc/modules/flash 2024-06-22T14:00:42,023 copying multiqc/modules/flash/__init__.py -> build/lib/multiqc/modules/flash 2024-06-22T14:00:42,025 copying multiqc/modules/flash/flash.py -> build/lib/multiqc/modules/flash 2024-06-22T14:00:42,027 creating build/lib/multiqc/modules/flexbar 2024-06-22T14:00:42,028 copying multiqc/modules/flexbar/__init__.py -> build/lib/multiqc/modules/flexbar 2024-06-22T14:00:42,030 copying multiqc/modules/flexbar/flexbar.py -> build/lib/multiqc/modules/flexbar 2024-06-22T14:00:42,032 creating build/lib/multiqc/modules/freyja 2024-06-22T14:00:42,033 copying multiqc/modules/freyja/__init__.py -> build/lib/multiqc/modules/freyja 2024-06-22T14:00:42,035 copying multiqc/modules/freyja/freyja.py -> build/lib/multiqc/modules/freyja 2024-06-22T14:00:42,038 creating build/lib/multiqc/modules/gatk 2024-06-22T14:00:42,038 copying multiqc/modules/gatk/__init__.py -> build/lib/multiqc/modules/gatk 2024-06-22T14:00:42,040 copying multiqc/modules/gatk/analyze_saturation_mutagenesis.py -> build/lib/multiqc/modules/gatk 2024-06-22T14:00:42,043 copying multiqc/modules/gatk/base_recalibrator.py -> build/lib/multiqc/modules/gatk 2024-06-22T14:00:42,046 copying multiqc/modules/gatk/gatk.py -> build/lib/multiqc/modules/gatk 2024-06-22T14:00:42,048 copying multiqc/modules/gatk/varianteval.py -> build/lib/multiqc/modules/gatk 2024-06-22T14:00:42,050 creating build/lib/multiqc/modules/gffcompare 2024-06-22T14:00:42,051 copying multiqc/modules/gffcompare/__init__.py -> build/lib/multiqc/modules/gffcompare 2024-06-22T14:00:42,053 copying multiqc/modules/gffcompare/gffcompare.py -> build/lib/multiqc/modules/gffcompare 2024-06-22T14:00:42,056 creating build/lib/multiqc/modules/goleft_indexcov 2024-06-22T14:00:42,057 copying multiqc/modules/goleft_indexcov/__init__.py -> build/lib/multiqc/modules/goleft_indexcov 2024-06-22T14:00:42,059 copying multiqc/modules/goleft_indexcov/goleft_indexcov.py -> build/lib/multiqc/modules/goleft_indexcov 2024-06-22T14:00:42,061 creating build/lib/multiqc/modules/gopeaks 2024-06-22T14:00:42,062 copying multiqc/modules/gopeaks/__init__.py -> build/lib/multiqc/modules/gopeaks 2024-06-22T14:00:42,064 copying multiqc/modules/gopeaks/gopeaks.py -> build/lib/multiqc/modules/gopeaks 2024-06-22T14:00:42,066 creating build/lib/multiqc/modules/happy 2024-06-22T14:00:42,067 copying multiqc/modules/happy/__init__.py -> build/lib/multiqc/modules/happy 2024-06-22T14:00:42,069 copying multiqc/modules/happy/happy.py -> build/lib/multiqc/modules/happy 2024-06-22T14:00:42,072 creating build/lib/multiqc/modules/hicexplorer 2024-06-22T14:00:42,073 copying multiqc/modules/hicexplorer/__init__.py -> build/lib/multiqc/modules/hicexplorer 2024-06-22T14:00:42,075 copying multiqc/modules/hicexplorer/hicexplorer.py -> build/lib/multiqc/modules/hicexplorer 2024-06-22T14:00:42,077 creating build/lib/multiqc/modules/hicpro 2024-06-22T14:00:42,078 copying multiqc/modules/hicpro/__init__.py -> build/lib/multiqc/modules/hicpro 2024-06-22T14:00:42,080 copying multiqc/modules/hicpro/hicpro.py -> build/lib/multiqc/modules/hicpro 2024-06-22T14:00:42,083 creating build/lib/multiqc/modules/hicup 2024-06-22T14:00:42,083 copying multiqc/modules/hicup/__init__.py -> build/lib/multiqc/modules/hicup 2024-06-22T14:00:42,085 copying multiqc/modules/hicup/hicup.py -> build/lib/multiqc/modules/hicup 2024-06-22T14:00:42,088 creating build/lib/multiqc/modules/hifiasm 2024-06-22T14:00:42,089 copying multiqc/modules/hifiasm/__init__.py -> build/lib/multiqc/modules/hifiasm 2024-06-22T14:00:42,091 copying multiqc/modules/hifiasm/hifiasm.py -> build/lib/multiqc/modules/hifiasm 2024-06-22T14:00:42,093 creating build/lib/multiqc/modules/hisat2 2024-06-22T14:00:42,094 copying multiqc/modules/hisat2/__init__.py -> build/lib/multiqc/modules/hisat2 2024-06-22T14:00:42,096 copying multiqc/modules/hisat2/hisat2.py -> build/lib/multiqc/modules/hisat2 2024-06-22T14:00:42,098 creating build/lib/multiqc/modules/homer 2024-06-22T14:00:42,099 copying multiqc/modules/homer/__init__.py -> build/lib/multiqc/modules/homer 2024-06-22T14:00:42,101 copying multiqc/modules/homer/findpeaks.py -> build/lib/multiqc/modules/homer 2024-06-22T14:00:42,103 copying multiqc/modules/homer/homer.py -> build/lib/multiqc/modules/homer 2024-06-22T14:00:42,104 copying multiqc/modules/homer/tagdirectory.py -> build/lib/multiqc/modules/homer 2024-06-22T14:00:42,107 creating build/lib/multiqc/modules/hops 2024-06-22T14:00:42,108 copying multiqc/modules/hops/__init__.py -> build/lib/multiqc/modules/hops 2024-06-22T14:00:42,110 copying multiqc/modules/hops/hops.py -> build/lib/multiqc/modules/hops 2024-06-22T14:00:42,112 creating build/lib/multiqc/modules/hostile 2024-06-22T14:00:42,113 copying multiqc/modules/hostile/__init__.py -> build/lib/multiqc/modules/hostile 2024-06-22T14:00:42,115 copying multiqc/modules/hostile/hostile.py -> build/lib/multiqc/modules/hostile 2024-06-22T14:00:42,117 creating build/lib/multiqc/modules/htseq 2024-06-22T14:00:42,118 copying multiqc/modules/htseq/__init__.py -> build/lib/multiqc/modules/htseq 2024-06-22T14:00:42,120 copying multiqc/modules/htseq/htseq.py -> build/lib/multiqc/modules/htseq 2024-06-22T14:00:42,122 creating build/lib/multiqc/modules/humid 2024-06-22T14:00:42,123 copying multiqc/modules/humid/__init__.py -> build/lib/multiqc/modules/humid 2024-06-22T14:00:42,125 copying multiqc/modules/humid/clusters.py -> build/lib/multiqc/modules/humid 2024-06-22T14:00:42,127 copying multiqc/modules/humid/counts.py -> build/lib/multiqc/modules/humid 2024-06-22T14:00:42,129 copying multiqc/modules/humid/humid.py -> build/lib/multiqc/modules/humid 2024-06-22T14:00:42,131 copying multiqc/modules/humid/neighbours.py -> build/lib/multiqc/modules/humid 2024-06-22T14:00:42,133 copying multiqc/modules/humid/stats.py -> build/lib/multiqc/modules/humid 2024-06-22T14:00:42,135 creating build/lib/multiqc/modules/interop 2024-06-22T14:00:42,136 copying multiqc/modules/interop/__init__.py -> build/lib/multiqc/modules/interop 2024-06-22T14:00:42,138 copying multiqc/modules/interop/interop.py -> build/lib/multiqc/modules/interop 2024-06-22T14:00:42,141 creating build/lib/multiqc/modules/isoseq 2024-06-22T14:00:42,141 copying multiqc/modules/isoseq/__init__.py -> build/lib/multiqc/modules/isoseq 2024-06-22T14:00:42,143 copying multiqc/modules/isoseq/isoseq.py -> build/lib/multiqc/modules/isoseq 2024-06-22T14:00:42,146 creating build/lib/multiqc/modules/ivar 2024-06-22T14:00:42,147 copying multiqc/modules/ivar/__init__.py -> build/lib/multiqc/modules/ivar 2024-06-22T14:00:42,149 copying multiqc/modules/ivar/ivar.py -> build/lib/multiqc/modules/ivar 2024-06-22T14:00:42,151 creating build/lib/multiqc/modules/jcvi 2024-06-22T14:00:42,152 copying multiqc/modules/jcvi/__init__.py -> build/lib/multiqc/modules/jcvi 2024-06-22T14:00:42,154 copying multiqc/modules/jcvi/jcvi.py -> build/lib/multiqc/modules/jcvi 2024-06-22T14:00:42,156 creating build/lib/multiqc/modules/jellyfish 2024-06-22T14:00:42,157 copying multiqc/modules/jellyfish/__init__.py -> build/lib/multiqc/modules/jellyfish 2024-06-22T14:00:42,159 copying multiqc/modules/jellyfish/jellyfish.py -> build/lib/multiqc/modules/jellyfish 2024-06-22T14:00:42,161 creating build/lib/multiqc/modules/kaiju 2024-06-22T14:00:42,162 copying multiqc/modules/kaiju/__init__.py -> build/lib/multiqc/modules/kaiju 2024-06-22T14:00:42,164 copying multiqc/modules/kaiju/kaiju.py -> build/lib/multiqc/modules/kaiju 2024-06-22T14:00:42,166 creating build/lib/multiqc/modules/kallisto 2024-06-22T14:00:42,167 copying multiqc/modules/kallisto/__init__.py -> build/lib/multiqc/modules/kallisto 2024-06-22T14:00:42,169 copying multiqc/modules/kallisto/kallisto.py -> build/lib/multiqc/modules/kallisto 2024-06-22T14:00:42,171 creating build/lib/multiqc/modules/kat 2024-06-22T14:00:42,172 copying multiqc/modules/kat/__init__.py -> build/lib/multiqc/modules/kat 2024-06-22T14:00:42,174 copying multiqc/modules/kat/kat.py -> build/lib/multiqc/modules/kat 2024-06-22T14:00:42,176 creating build/lib/multiqc/modules/kraken 2024-06-22T14:00:42,177 copying multiqc/modules/kraken/__init__.py -> build/lib/multiqc/modules/kraken 2024-06-22T14:00:42,179 copying multiqc/modules/kraken/kraken.py -> build/lib/multiqc/modules/kraken 2024-06-22T14:00:42,182 creating build/lib/multiqc/modules/leehom 2024-06-22T14:00:42,183 copying multiqc/modules/leehom/__init__.py -> build/lib/multiqc/modules/leehom 2024-06-22T14:00:42,185 copying multiqc/modules/leehom/leehom.py -> build/lib/multiqc/modules/leehom 2024-06-22T14:00:42,186 creating build/lib/multiqc/modules/librarian 2024-06-22T14:00:42,187 copying multiqc/modules/librarian/__init__.py -> build/lib/multiqc/modules/librarian 2024-06-22T14:00:42,189 copying multiqc/modules/librarian/librarian.py -> build/lib/multiqc/modules/librarian 2024-06-22T14:00:42,191 creating build/lib/multiqc/modules/lima 2024-06-22T14:00:42,192 copying multiqc/modules/lima/__init__.py -> build/lib/multiqc/modules/lima 2024-06-22T14:00:42,194 copying multiqc/modules/lima/lima.py -> build/lib/multiqc/modules/lima 2024-06-22T14:00:42,197 creating build/lib/multiqc/modules/longranger 2024-06-22T14:00:42,198 copying multiqc/modules/longranger/__init__.py -> build/lib/multiqc/modules/longranger 2024-06-22T14:00:42,199 copying multiqc/modules/longranger/longranger.py -> build/lib/multiqc/modules/longranger 2024-06-22T14:00:42,202 creating build/lib/multiqc/modules/macs2 2024-06-22T14:00:42,203 copying multiqc/modules/macs2/__init__.py -> build/lib/multiqc/modules/macs2 2024-06-22T14:00:42,205 copying multiqc/modules/macs2/macs2.py -> build/lib/multiqc/modules/macs2 2024-06-22T14:00:42,207 creating build/lib/multiqc/modules/malt 2024-06-22T14:00:42,208 copying multiqc/modules/malt/__init__.py -> build/lib/multiqc/modules/malt 2024-06-22T14:00:42,211 copying multiqc/modules/malt/malt.py -> build/lib/multiqc/modules/malt 2024-06-22T14:00:42,213 creating build/lib/multiqc/modules/mapdamage 2024-06-22T14:00:42,214 copying multiqc/modules/mapdamage/__init__.py -> build/lib/multiqc/modules/mapdamage 2024-06-22T14:00:42,216 copying multiqc/modules/mapdamage/mapdamage.py -> build/lib/multiqc/modules/mapdamage 2024-06-22T14:00:42,219 creating build/lib/multiqc/modules/megahit 2024-06-22T14:00:42,220 copying multiqc/modules/megahit/__init__.py -> build/lib/multiqc/modules/megahit 2024-06-22T14:00:42,223 copying multiqc/modules/megahit/megahit.py -> build/lib/multiqc/modules/megahit 2024-06-22T14:00:42,225 creating build/lib/multiqc/modules/metaphlan 2024-06-22T14:00:42,226 copying multiqc/modules/metaphlan/__init__.py -> build/lib/multiqc/modules/metaphlan 2024-06-22T14:00:42,228 copying multiqc/modules/metaphlan/metaphlan.py -> build/lib/multiqc/modules/metaphlan 2024-06-22T14:00:42,231 creating build/lib/multiqc/modules/methylqa 2024-06-22T14:00:42,232 copying multiqc/modules/methylqa/__init__.py -> build/lib/multiqc/modules/methylqa 2024-06-22T14:00:42,234 copying multiqc/modules/methylqa/methylqa.py -> build/lib/multiqc/modules/methylqa 2024-06-22T14:00:42,236 creating build/lib/multiqc/modules/minionqc 2024-06-22T14:00:42,237 copying multiqc/modules/minionqc/__init__.py -> build/lib/multiqc/modules/minionqc 2024-06-22T14:00:42,239 copying multiqc/modules/minionqc/minionqc.py -> build/lib/multiqc/modules/minionqc 2024-06-22T14:00:42,241 creating build/lib/multiqc/modules/mirtop 2024-06-22T14:00:42,242 copying multiqc/modules/mirtop/__init__.py -> build/lib/multiqc/modules/mirtop 2024-06-22T14:00:42,244 copying multiqc/modules/mirtop/mirtop.py -> build/lib/multiqc/modules/mirtop 2024-06-22T14:00:42,246 creating build/lib/multiqc/modules/mirtrace 2024-06-22T14:00:42,247 copying multiqc/modules/mirtrace/__init__.py -> build/lib/multiqc/modules/mirtrace 2024-06-22T14:00:42,249 copying multiqc/modules/mirtrace/mirtrace.py -> build/lib/multiqc/modules/mirtrace 2024-06-22T14:00:42,252 creating build/lib/multiqc/modules/mosdepth 2024-06-22T14:00:42,253 copying multiqc/modules/mosdepth/__init__.py -> build/lib/multiqc/modules/mosdepth 2024-06-22T14:00:42,254 copying multiqc/modules/mosdepth/mosdepth.py -> build/lib/multiqc/modules/mosdepth 2024-06-22T14:00:42,257 creating build/lib/multiqc/modules/motus 2024-06-22T14:00:42,258 copying multiqc/modules/motus/__init__.py -> build/lib/multiqc/modules/motus 2024-06-22T14:00:42,260 copying multiqc/modules/motus/motus.py -> build/lib/multiqc/modules/motus 2024-06-22T14:00:42,262 creating build/lib/multiqc/modules/mtnucratio 2024-06-22T14:00:42,263 copying multiqc/modules/mtnucratio/__init__.py -> build/lib/multiqc/modules/mtnucratio 2024-06-22T14:00:42,265 copying multiqc/modules/mtnucratio/mtnucratio.py -> build/lib/multiqc/modules/mtnucratio 2024-06-22T14:00:42,267 creating build/lib/multiqc/modules/multivcfanalyzer 2024-06-22T14:00:42,268 copying multiqc/modules/multivcfanalyzer/__init__.py -> build/lib/multiqc/modules/multivcfanalyzer 2024-06-22T14:00:42,270 copying multiqc/modules/multivcfanalyzer/multivcfanalyzer.py -> build/lib/multiqc/modules/multivcfanalyzer 2024-06-22T14:00:42,273 creating build/lib/multiqc/modules/nanostat 2024-06-22T14:00:42,274 copying multiqc/modules/nanostat/__init__.py -> build/lib/multiqc/modules/nanostat 2024-06-22T14:00:42,276 copying multiqc/modules/nanostat/nanostat.py -> build/lib/multiqc/modules/nanostat 2024-06-22T14:00:42,278 creating build/lib/multiqc/modules/nextclade 2024-06-22T14:00:42,279 copying multiqc/modules/nextclade/__init__.py -> build/lib/multiqc/modules/nextclade 2024-06-22T14:00:42,282 copying multiqc/modules/nextclade/nextclade.py -> build/lib/multiqc/modules/nextclade 2024-06-22T14:00:42,284 creating build/lib/multiqc/modules/ngsderive 2024-06-22T14:00:42,285 copying multiqc/modules/ngsderive/__init__.py -> build/lib/multiqc/modules/ngsderive 2024-06-22T14:00:42,288 copying multiqc/modules/ngsderive/ngsderive.py -> build/lib/multiqc/modules/ngsderive 2024-06-22T14:00:42,290 creating build/lib/multiqc/modules/nonpareil 2024-06-22T14:00:42,291 copying multiqc/modules/nonpareil/__init__.py -> build/lib/multiqc/modules/nonpareil 2024-06-22T14:00:42,293 copying multiqc/modules/nonpareil/nonpareil.py -> build/lib/multiqc/modules/nonpareil 2024-06-22T14:00:42,296 creating build/lib/multiqc/modules/odgi 2024-06-22T14:00:42,297 copying multiqc/modules/odgi/__init__.py -> build/lib/multiqc/modules/odgi 2024-06-22T14:00:42,299 copying multiqc/modules/odgi/odgi.py -> build/lib/multiqc/modules/odgi 2024-06-22T14:00:42,301 creating build/lib/multiqc/modules/optitype 2024-06-22T14:00:42,302 copying multiqc/modules/optitype/__init__.py -> build/lib/multiqc/modules/optitype 2024-06-22T14:00:42,304 copying multiqc/modules/optitype/optitype.py -> build/lib/multiqc/modules/optitype 2024-06-22T14:00:42,307 creating build/lib/multiqc/modules/pangolin 2024-06-22T14:00:42,307 copying multiqc/modules/pangolin/__init__.py -> build/lib/multiqc/modules/pangolin 2024-06-22T14:00:42,310 copying multiqc/modules/pangolin/pangolin.py -> build/lib/multiqc/modules/pangolin 2024-06-22T14:00:42,312 creating build/lib/multiqc/modules/pbmarkdup 2024-06-22T14:00:42,313 copying multiqc/modules/pbmarkdup/__init__.py -> build/lib/multiqc/modules/pbmarkdup 2024-06-22T14:00:42,315 copying multiqc/modules/pbmarkdup/pbmarkdup.py -> build/lib/multiqc/modules/pbmarkdup 2024-06-22T14:00:42,318 creating build/lib/multiqc/modules/peddy 2024-06-22T14:00:42,318 copying multiqc/modules/peddy/__init__.py -> build/lib/multiqc/modules/peddy 2024-06-22T14:00:42,321 copying multiqc/modules/peddy/peddy.py -> build/lib/multiqc/modules/peddy 2024-06-22T14:00:42,323 creating build/lib/multiqc/modules/phantompeakqualtools 2024-06-22T14:00:42,324 copying multiqc/modules/phantompeakqualtools/__init__.py -> build/lib/multiqc/modules/phantompeakqualtools 2024-06-22T14:00:42,326 copying multiqc/modules/phantompeakqualtools/phantompeakqualtools.py -> build/lib/multiqc/modules/phantompeakqualtools 2024-06-22T14:00:42,328 creating build/lib/multiqc/modules/picard 2024-06-22T14:00:42,329 copying multiqc/modules/picard/AlignmentSummaryMetrics.py -> build/lib/multiqc/modules/picard 2024-06-22T14:00:42,331 copying multiqc/modules/picard/BaseDistributionByCycleMetrics.py -> build/lib/multiqc/modules/picard 2024-06-22T14:00:42,333 copying multiqc/modules/picard/CrosscheckFingerprints.py -> build/lib/multiqc/modules/picard 2024-06-22T14:00:42,336 copying multiqc/modules/picard/ExtractIlluminaBarcodes.py -> build/lib/multiqc/modules/picard 2024-06-22T14:00:42,338 copying multiqc/modules/picard/GcBiasMetrics.py -> build/lib/multiqc/modules/picard 2024-06-22T14:00:42,340 copying multiqc/modules/picard/HsMetrics.py -> build/lib/multiqc/modules/picard 2024-06-22T14:00:42,343 copying multiqc/modules/picard/IlluminaBasecallingMetrics.py -> build/lib/multiqc/modules/picard 2024-06-22T14:00:42,345 copying multiqc/modules/picard/IlluminaLaneMetrics.py -> build/lib/multiqc/modules/picard 2024-06-22T14:00:42,347 copying multiqc/modules/picard/InsertSizeMetrics.py -> build/lib/multiqc/modules/picard 2024-06-22T14:00:42,350 copying multiqc/modules/picard/MarkDuplicates.py -> build/lib/multiqc/modules/picard 2024-06-22T14:00:42,352 copying multiqc/modules/picard/MarkIlluminaAdapters.py -> build/lib/multiqc/modules/picard 2024-06-22T14:00:42,354 copying multiqc/modules/picard/OxoGMetrics.py -> build/lib/multiqc/modules/picard 2024-06-22T14:00:42,356 copying multiqc/modules/picard/QualityByCycleMetrics.py -> build/lib/multiqc/modules/picard 2024-06-22T14:00:42,358 copying multiqc/modules/picard/QualityScoreDistributionMetrics.py -> build/lib/multiqc/modules/picard 2024-06-22T14:00:42,360 copying multiqc/modules/picard/QualityYieldMetrics.py -> build/lib/multiqc/modules/picard 2024-06-22T14:00:42,363 copying multiqc/modules/picard/RnaSeqMetrics.py -> build/lib/multiqc/modules/picard 2024-06-22T14:00:42,365 copying multiqc/modules/picard/RrbsSummaryMetrics.py -> build/lib/multiqc/modules/picard 2024-06-22T14:00:42,368 copying multiqc/modules/picard/TargetedPcrMetrics.py -> build/lib/multiqc/modules/picard 2024-06-22T14:00:42,370 copying multiqc/modules/picard/ValidateSamFile.py -> build/lib/multiqc/modules/picard 2024-06-22T14:00:42,373 copying multiqc/modules/picard/VariantCallingMetrics.py -> build/lib/multiqc/modules/picard 2024-06-22T14:00:42,376 copying multiqc/modules/picard/WgsMetrics.py -> build/lib/multiqc/modules/picard 2024-06-22T14:00:42,378 copying multiqc/modules/picard/__init__.py -> build/lib/multiqc/modules/picard 2024-06-22T14:00:42,380 copying multiqc/modules/picard/picard.py -> build/lib/multiqc/modules/picard 2024-06-22T14:00:42,382 copying multiqc/modules/picard/util.py -> build/lib/multiqc/modules/picard 2024-06-22T14:00:42,384 creating build/lib/multiqc/modules/picard/tests 2024-06-22T14:00:42,385 copying multiqc/modules/picard/tests/__init__.py -> build/lib/multiqc/modules/picard/tests 2024-06-22T14:00:42,387 copying multiqc/modules/picard/tests/test_picard.py -> build/lib/multiqc/modules/picard/tests 2024-06-22T14:00:42,389 creating build/lib/multiqc/modules/porechop 2024-06-22T14:00:42,390 copying multiqc/modules/porechop/__init__.py -> build/lib/multiqc/modules/porechop 2024-06-22T14:00:42,392 copying multiqc/modules/porechop/porechop.py -> build/lib/multiqc/modules/porechop 2024-06-22T14:00:42,395 creating build/lib/multiqc/modules/preseq 2024-06-22T14:00:42,395 copying multiqc/modules/preseq/__init__.py -> build/lib/multiqc/modules/preseq 2024-06-22T14:00:42,398 copying multiqc/modules/preseq/preseq.py -> build/lib/multiqc/modules/preseq 2024-06-22T14:00:42,400 creating build/lib/multiqc/modules/prinseqplusplus 2024-06-22T14:00:42,401 copying multiqc/modules/prinseqplusplus/__init__.py -> build/lib/multiqc/modules/prinseqplusplus 2024-06-22T14:00:42,403 copying multiqc/modules/prinseqplusplus/prinseqplusplus.py -> build/lib/multiqc/modules/prinseqplusplus 2024-06-22T14:00:42,406 creating build/lib/multiqc/modules/prokka 2024-06-22T14:00:42,406 copying multiqc/modules/prokka/__init__.py -> build/lib/multiqc/modules/prokka 2024-06-22T14:00:42,408 copying multiqc/modules/prokka/prokka.py -> build/lib/multiqc/modules/prokka 2024-06-22T14:00:42,411 creating build/lib/multiqc/modules/purple 2024-06-22T14:00:42,412 copying multiqc/modules/purple/__init__.py -> build/lib/multiqc/modules/purple 2024-06-22T14:00:42,414 copying multiqc/modules/purple/purple.py -> build/lib/multiqc/modules/purple 2024-06-22T14:00:42,417 creating build/lib/multiqc/modules/pychopper 2024-06-22T14:00:42,418 copying multiqc/modules/pychopper/__init__.py -> build/lib/multiqc/modules/pychopper 2024-06-22T14:00:42,421 copying multiqc/modules/pychopper/pychopper.py -> build/lib/multiqc/modules/pychopper 2024-06-22T14:00:42,423 creating build/lib/multiqc/modules/pycoqc 2024-06-22T14:00:42,424 copying multiqc/modules/pycoqc/__init__.py -> build/lib/multiqc/modules/pycoqc 2024-06-22T14:00:42,427 copying multiqc/modules/pycoqc/pycoqc.py -> build/lib/multiqc/modules/pycoqc 2024-06-22T14:00:42,430 creating build/lib/multiqc/modules/qc3C 2024-06-22T14:00:42,431 copying multiqc/modules/qc3C/__init__.py -> build/lib/multiqc/modules/qc3C 2024-06-22T14:00:42,434 copying multiqc/modules/qc3C/qc3C.py -> build/lib/multiqc/modules/qc3C 2024-06-22T14:00:42,437 creating build/lib/multiqc/modules/qorts 2024-06-22T14:00:42,438 copying multiqc/modules/qorts/__init__.py -> build/lib/multiqc/modules/qorts 2024-06-22T14:00:42,441 copying multiqc/modules/qorts/qorts.py -> build/lib/multiqc/modules/qorts 2024-06-22T14:00:42,444 creating build/lib/multiqc/modules/qualimap 2024-06-22T14:00:42,445 copying multiqc/modules/qualimap/QM_BamQC.py -> build/lib/multiqc/modules/qualimap 2024-06-22T14:00:42,449 copying multiqc/modules/qualimap/QM_RNASeq.py -> build/lib/multiqc/modules/qualimap 2024-06-22T14:00:42,452 copying multiqc/modules/qualimap/__init__.py -> build/lib/multiqc/modules/qualimap 2024-06-22T14:00:42,454 copying multiqc/modules/qualimap/qualimap.py -> build/lib/multiqc/modules/qualimap 2024-06-22T14:00:42,457 creating build/lib/multiqc/modules/quast 2024-06-22T14:00:42,458 copying multiqc/modules/quast/__init__.py -> build/lib/multiqc/modules/quast 2024-06-22T14:00:42,461 copying multiqc/modules/quast/quast.py -> build/lib/multiqc/modules/quast 2024-06-22T14:00:42,468 creating build/lib/multiqc/modules/rna_seqc 2024-06-22T14:00:42,469 copying multiqc/modules/rna_seqc/__init__.py -> build/lib/multiqc/modules/rna_seqc 2024-06-22T14:00:42,471 copying multiqc/modules/rna_seqc/rna_seqc.py -> build/lib/multiqc/modules/rna_seqc 2024-06-22T14:00:42,474 creating build/lib/multiqc/modules/rockhopper 2024-06-22T14:00:42,476 copying multiqc/modules/rockhopper/__init__.py -> build/lib/multiqc/modules/rockhopper 2024-06-22T14:00:42,478 copying multiqc/modules/rockhopper/rockhopper.py -> build/lib/multiqc/modules/rockhopper 2024-06-22T14:00:42,481 creating build/lib/multiqc/modules/rsem 2024-06-22T14:00:42,482 copying multiqc/modules/rsem/__init__.py -> build/lib/multiqc/modules/rsem 2024-06-22T14:00:42,485 copying multiqc/modules/rsem/rsem.py -> build/lib/multiqc/modules/rsem 2024-06-22T14:00:42,488 creating build/lib/multiqc/modules/rseqc 2024-06-22T14:00:42,489 copying multiqc/modules/rseqc/__init__.py -> build/lib/multiqc/modules/rseqc 2024-06-22T14:00:42,491 copying multiqc/modules/rseqc/bam_stat.py -> build/lib/multiqc/modules/rseqc 2024-06-22T14:00:42,494 copying multiqc/modules/rseqc/gene_body_coverage.py -> build/lib/multiqc/modules/rseqc 2024-06-22T14:00:42,497 copying multiqc/modules/rseqc/infer_experiment.py -> build/lib/multiqc/modules/rseqc 2024-06-22T14:00:42,499 copying multiqc/modules/rseqc/inner_distance.py -> build/lib/multiqc/modules/rseqc 2024-06-22T14:00:42,502 copying multiqc/modules/rseqc/junction_annotation.py -> build/lib/multiqc/modules/rseqc 2024-06-22T14:00:42,504 copying multiqc/modules/rseqc/junction_saturation.py -> build/lib/multiqc/modules/rseqc 2024-06-22T14:00:42,507 copying multiqc/modules/rseqc/read_distribution.py -> build/lib/multiqc/modules/rseqc 2024-06-22T14:00:42,510 copying multiqc/modules/rseqc/read_duplication.py -> build/lib/multiqc/modules/rseqc 2024-06-22T14:00:42,512 copying multiqc/modules/rseqc/read_gc.py -> build/lib/multiqc/modules/rseqc 2024-06-22T14:00:42,515 copying multiqc/modules/rseqc/rseqc.py -> build/lib/multiqc/modules/rseqc 2024-06-22T14:00:42,517 copying multiqc/modules/rseqc/tin.py -> build/lib/multiqc/modules/rseqc 2024-06-22T14:00:42,519 creating build/lib/multiqc/modules/rseqc/assets 2024-06-22T14:00:42,520 creating build/lib/multiqc/modules/rseqc/assets/js 2024-06-22T14:00:42,521 copying multiqc/modules/rseqc/assets/js/multiqc_rseqc.js -> build/lib/multiqc/modules/rseqc/assets/js 2024-06-22T14:00:42,523 creating build/lib/multiqc/modules/salmon 2024-06-22T14:00:42,525 copying multiqc/modules/salmon/__init__.py -> build/lib/multiqc/modules/salmon 2024-06-22T14:00:42,527 copying multiqc/modules/salmon/salmon.py -> build/lib/multiqc/modules/salmon 2024-06-22T14:00:42,530 creating build/lib/multiqc/modules/sambamba 2024-06-22T14:00:42,531 copying multiqc/modules/sambamba/__init__.py -> build/lib/multiqc/modules/sambamba 2024-06-22T14:00:42,534 copying multiqc/modules/sambamba/markdup.py -> build/lib/multiqc/modules/sambamba 2024-06-22T14:00:42,537 copying multiqc/modules/sambamba/sambamba.py -> build/lib/multiqc/modules/sambamba 2024-06-22T14:00:42,539 creating build/lib/multiqc/modules/samblaster 2024-06-22T14:00:42,540 copying multiqc/modules/samblaster/__init__.py -> build/lib/multiqc/modules/samblaster 2024-06-22T14:00:42,543 copying multiqc/modules/samblaster/samblaster.py -> build/lib/multiqc/modules/samblaster 2024-06-22T14:00:42,545 creating build/lib/multiqc/modules/samtools 2024-06-22T14:00:42,546 copying multiqc/modules/samtools/__init__.py -> build/lib/multiqc/modules/samtools 2024-06-22T14:00:42,549 copying multiqc/modules/samtools/coverage.py -> build/lib/multiqc/modules/samtools 2024-06-22T14:00:42,553 copying multiqc/modules/samtools/flagstat.py -> build/lib/multiqc/modules/samtools 2024-06-22T14:00:42,556 copying multiqc/modules/samtools/idxstats.py -> build/lib/multiqc/modules/samtools 2024-06-22T14:00:42,559 copying multiqc/modules/samtools/markdup.py -> build/lib/multiqc/modules/samtools 2024-06-22T14:00:42,562 copying multiqc/modules/samtools/rmdup.py -> build/lib/multiqc/modules/samtools 2024-06-22T14:00:42,565 copying multiqc/modules/samtools/samtools.py -> build/lib/multiqc/modules/samtools 2024-06-22T14:00:42,567 copying multiqc/modules/samtools/stats.py -> build/lib/multiqc/modules/samtools 2024-06-22T14:00:42,570 creating build/lib/multiqc/modules/samtools/tests 2024-06-22T14:00:42,572 copying multiqc/modules/samtools/tests/__init__.py -> build/lib/multiqc/modules/samtools/tests 2024-06-22T14:00:42,574 copying multiqc/modules/samtools/tests/test_flagstat.py -> build/lib/multiqc/modules/samtools/tests 2024-06-22T14:00:42,577 creating build/lib/multiqc/modules/sargasso 2024-06-22T14:00:42,578 copying multiqc/modules/sargasso/__init__.py -> build/lib/multiqc/modules/sargasso 2024-06-22T14:00:42,580 copying multiqc/modules/sargasso/sargasso.py -> build/lib/multiqc/modules/sargasso 2024-06-22T14:00:42,583 creating build/lib/multiqc/modules/seqera_cli 2024-06-22T14:00:42,584 copying multiqc/modules/seqera_cli/__init__.py -> build/lib/multiqc/modules/seqera_cli 2024-06-22T14:00:42,587 copying multiqc/modules/seqera_cli/seqera_cli.py -> build/lib/multiqc/modules/seqera_cli 2024-06-22T14:00:42,590 creating build/lib/multiqc/modules/sequali 2024-06-22T14:00:42,591 copying multiqc/modules/sequali/__init__.py -> build/lib/multiqc/modules/sequali 2024-06-22T14:00:42,594 copying multiqc/modules/sequali/sequali.py -> build/lib/multiqc/modules/sequali 2024-06-22T14:00:42,598 creating build/lib/multiqc/modules/seqwho 2024-06-22T14:00:42,600 copying multiqc/modules/seqwho/__init__.py -> build/lib/multiqc/modules/seqwho 2024-06-22T14:00:42,603 copying multiqc/modules/seqwho/seqwho.py -> build/lib/multiqc/modules/seqwho 2024-06-22T14:00:42,606 creating build/lib/multiqc/modules/seqyclean 2024-06-22T14:00:42,607 copying multiqc/modules/seqyclean/__init__.py -> build/lib/multiqc/modules/seqyclean 2024-06-22T14:00:42,610 copying multiqc/modules/seqyclean/seqyclean.py -> build/lib/multiqc/modules/seqyclean 2024-06-22T14:00:42,612 creating build/lib/multiqc/modules/sexdeterrmine 2024-06-22T14:00:42,613 copying multiqc/modules/sexdeterrmine/__init__.py -> build/lib/multiqc/modules/sexdeterrmine 2024-06-22T14:00:42,616 copying multiqc/modules/sexdeterrmine/sexdeterrmine.py -> build/lib/multiqc/modules/sexdeterrmine 2024-06-22T14:00:42,621 creating build/lib/multiqc/modules/sickle 2024-06-22T14:00:42,622 copying multiqc/modules/sickle/__init__.py -> build/lib/multiqc/modules/sickle 2024-06-22T14:00:42,624 copying multiqc/modules/sickle/sickle.py -> build/lib/multiqc/modules/sickle 2024-06-22T14:00:42,626 creating build/lib/multiqc/modules/skewer 2024-06-22T14:00:42,627 copying multiqc/modules/skewer/__init__.py -> build/lib/multiqc/modules/skewer 2024-06-22T14:00:42,629 copying multiqc/modules/skewer/skewer.py -> build/lib/multiqc/modules/skewer 2024-06-22T14:00:42,632 creating build/lib/multiqc/modules/slamdunk 2024-06-22T14:00:42,633 copying multiqc/modules/slamdunk/__init__.py -> build/lib/multiqc/modules/slamdunk 2024-06-22T14:00:42,635 copying multiqc/modules/slamdunk/slamdunk.py -> build/lib/multiqc/modules/slamdunk 2024-06-22T14:00:42,639 creating build/lib/multiqc/modules/snippy 2024-06-22T14:00:42,640 copying multiqc/modules/snippy/__init__.py -> build/lib/multiqc/modules/snippy 2024-06-22T14:00:42,642 copying multiqc/modules/snippy/snippy.py -> build/lib/multiqc/modules/snippy 2024-06-22T14:00:42,645 creating build/lib/multiqc/modules/snpeff 2024-06-22T14:00:42,646 copying multiqc/modules/snpeff/__init__.py -> build/lib/multiqc/modules/snpeff 2024-06-22T14:00:42,648 copying multiqc/modules/snpeff/snpeff.py -> build/lib/multiqc/modules/snpeff 2024-06-22T14:00:42,651 creating build/lib/multiqc/modules/snpsplit 2024-06-22T14:00:42,652 copying multiqc/modules/snpsplit/__init__.py -> build/lib/multiqc/modules/snpsplit 2024-06-22T14:00:42,654 copying multiqc/modules/snpsplit/snpsplit.py -> build/lib/multiqc/modules/snpsplit 2024-06-22T14:00:42,656 creating build/lib/multiqc/modules/somalier 2024-06-22T14:00:42,657 copying multiqc/modules/somalier/__init__.py -> build/lib/multiqc/modules/somalier 2024-06-22T14:00:42,659 copying multiqc/modules/somalier/somalier.py -> build/lib/multiqc/modules/somalier 2024-06-22T14:00:42,663 creating build/lib/multiqc/modules/sortmerna 2024-06-22T14:00:42,664 copying multiqc/modules/sortmerna/__init__.py -> build/lib/multiqc/modules/sortmerna 2024-06-22T14:00:42,666 copying multiqc/modules/sortmerna/sortmerna.py -> build/lib/multiqc/modules/sortmerna 2024-06-22T14:00:42,668 creating build/lib/multiqc/modules/sourmash 2024-06-22T14:00:42,669 copying multiqc/modules/sourmash/__init__.py -> build/lib/multiqc/modules/sourmash 2024-06-22T14:00:42,671 copying multiqc/modules/sourmash/compare.py -> build/lib/multiqc/modules/sourmash 2024-06-22T14:00:42,674 copying multiqc/modules/sourmash/gather.py -> build/lib/multiqc/modules/sourmash 2024-06-22T14:00:42,676 copying multiqc/modules/sourmash/sourmash.py -> build/lib/multiqc/modules/sourmash 2024-06-22T14:00:42,678 creating build/lib/multiqc/modules/spaceranger 2024-06-22T14:00:42,679 copying multiqc/modules/spaceranger/__init__.py -> build/lib/multiqc/modules/spaceranger 2024-06-22T14:00:42,681 copying multiqc/modules/spaceranger/_utils.py -> build/lib/multiqc/modules/spaceranger 2024-06-22T14:00:42,684 copying multiqc/modules/spaceranger/count.py -> build/lib/multiqc/modules/spaceranger 2024-06-22T14:00:42,687 copying multiqc/modules/spaceranger/spaceranger.py -> build/lib/multiqc/modules/spaceranger 2024-06-22T14:00:42,689 creating build/lib/multiqc/modules/stacks 2024-06-22T14:00:42,690 copying multiqc/modules/stacks/__init__.py -> build/lib/multiqc/modules/stacks 2024-06-22T14:00:42,692 copying multiqc/modules/stacks/stacks.py -> build/lib/multiqc/modules/stacks 2024-06-22T14:00:42,694 creating build/lib/multiqc/modules/star 2024-06-22T14:00:42,695 copying multiqc/modules/star/__init__.py -> build/lib/multiqc/modules/star 2024-06-22T14:00:42,697 copying multiqc/modules/star/star.py -> build/lib/multiqc/modules/star 2024-06-22T14:00:42,700 creating build/lib/multiqc/modules/supernova 2024-06-22T14:00:42,701 copying multiqc/modules/supernova/__init__.py -> build/lib/multiqc/modules/supernova 2024-06-22T14:00:42,703 copying multiqc/modules/supernova/supernova.py -> build/lib/multiqc/modules/supernova 2024-06-22T14:00:42,706 creating build/lib/multiqc/modules/theta2 2024-06-22T14:00:42,707 copying multiqc/modules/theta2/__init__.py -> build/lib/multiqc/modules/theta2 2024-06-22T14:00:42,709 copying multiqc/modules/theta2/theta2.py -> build/lib/multiqc/modules/theta2 2024-06-22T14:00:42,711 creating build/lib/multiqc/modules/tophat 2024-06-22T14:00:42,712 copying multiqc/modules/tophat/__init__.py -> build/lib/multiqc/modules/tophat 2024-06-22T14:00:42,715 copying multiqc/modules/tophat/tophat.py -> build/lib/multiqc/modules/tophat 2024-06-22T14:00:42,718 creating build/lib/multiqc/modules/trimmomatic 2024-06-22T14:00:42,719 copying multiqc/modules/trimmomatic/__init__.py -> build/lib/multiqc/modules/trimmomatic 2024-06-22T14:00:42,721 copying multiqc/modules/trimmomatic/trimmomatic.py -> build/lib/multiqc/modules/trimmomatic 2024-06-22T14:00:42,723 creating build/lib/multiqc/modules/truvari 2024-06-22T14:00:42,724 copying multiqc/modules/truvari/__init__.py -> build/lib/multiqc/modules/truvari 2024-06-22T14:00:42,726 copying multiqc/modules/truvari/bench.py -> build/lib/multiqc/modules/truvari 2024-06-22T14:00:42,729 copying multiqc/modules/truvari/truvari.py -> build/lib/multiqc/modules/truvari 2024-06-22T14:00:42,731 creating build/lib/multiqc/modules/umitools 2024-06-22T14:00:42,732 copying multiqc/modules/umitools/__init__.py -> build/lib/multiqc/modules/umitools 2024-06-22T14:00:42,734 copying multiqc/modules/umitools/umitools.py -> build/lib/multiqc/modules/umitools 2024-06-22T14:00:42,736 creating build/lib/multiqc/modules/varscan2 2024-06-22T14:00:42,737 copying multiqc/modules/varscan2/__init__.py -> build/lib/multiqc/modules/varscan2 2024-06-22T14:00:42,740 copying multiqc/modules/varscan2/varscan2.py -> build/lib/multiqc/modules/varscan2 2024-06-22T14:00:42,742 creating build/lib/multiqc/modules/vcftools 2024-06-22T14:00:42,743 copying multiqc/modules/vcftools/__init__.py -> build/lib/multiqc/modules/vcftools 2024-06-22T14:00:42,745 copying multiqc/modules/vcftools/relatedness2.py -> build/lib/multiqc/modules/vcftools 2024-06-22T14:00:42,747 copying multiqc/modules/vcftools/tstv_by_count.py -> build/lib/multiqc/modules/vcftools 2024-06-22T14:00:42,749 copying multiqc/modules/vcftools/tstv_by_qual.py -> build/lib/multiqc/modules/vcftools 2024-06-22T14:00:42,751 copying multiqc/modules/vcftools/tstv_summary.py -> build/lib/multiqc/modules/vcftools 2024-06-22T14:00:42,754 copying multiqc/modules/vcftools/vcftools.py -> build/lib/multiqc/modules/vcftools 2024-06-22T14:00:42,755 creating build/lib/multiqc/modules/vep 2024-06-22T14:00:42,756 copying multiqc/modules/vep/__init__.py -> build/lib/multiqc/modules/vep 2024-06-22T14:00:42,758 copying multiqc/modules/vep/vep.py -> build/lib/multiqc/modules/vep 2024-06-22T14:00:42,761 creating build/lib/multiqc/modules/verifybamid 2024-06-22T14:00:42,762 copying multiqc/modules/verifybamid/__init__.py -> build/lib/multiqc/modules/verifybamid 2024-06-22T14:00:42,764 copying multiqc/modules/verifybamid/verifybamid.py -> build/lib/multiqc/modules/verifybamid 2024-06-22T14:00:42,767 creating build/lib/multiqc/modules/whatshap 2024-06-22T14:00:42,768 copying multiqc/modules/whatshap/__init__.py -> build/lib/multiqc/modules/whatshap 2024-06-22T14:00:42,770 copying multiqc/modules/whatshap/whatshap.py -> build/lib/multiqc/modules/whatshap 2024-06-22T14:00:42,773 creating build/lib/multiqc/modules/xengsort 2024-06-22T14:00:42,773 copying multiqc/modules/xengsort/__init__.py -> build/lib/multiqc/modules/xengsort 2024-06-22T14:00:42,775 copying multiqc/modules/xengsort/xengsort.py -> build/lib/multiqc/modules/xengsort 2024-06-22T14:00:42,778 creating build/lib/multiqc/modules/xenome 2024-06-22T14:00:42,778 copying multiqc/modules/xenome/__init__.py -> build/lib/multiqc/modules/xenome 2024-06-22T14:00:42,780 copying multiqc/modules/xenome/xenome.py -> build/lib/multiqc/modules/xenome 2024-06-22T14:00:42,783 creating build/lib/multiqc/plots 2024-06-22T14:00:42,784 copying multiqc/plots/__init__.py -> build/lib/multiqc/plots 2024-06-22T14:00:42,786 copying multiqc/plots/bargraph.py -> build/lib/multiqc/plots 2024-06-22T14:00:42,788 copying multiqc/plots/box.py -> build/lib/multiqc/plots 2024-06-22T14:00:42,790 copying multiqc/plots/heatmap.py -> build/lib/multiqc/plots 2024-06-22T14:00:42,792 copying multiqc/plots/linegraph.py -> build/lib/multiqc/plots 2024-06-22T14:00:42,794 copying multiqc/plots/scatter.py -> build/lib/multiqc/plots 2024-06-22T14:00:42,797 copying multiqc/plots/table.py -> build/lib/multiqc/plots 2024-06-22T14:00:42,799 copying multiqc/plots/table_object.py -> build/lib/multiqc/plots 2024-06-22T14:00:42,802 copying multiqc/plots/violin.py -> build/lib/multiqc/plots 2024-06-22T14:00:42,805 creating build/lib/multiqc/plots/plotly 2024-06-22T14:00:42,806 copying multiqc/plots/plotly/__init__.py -> build/lib/multiqc/plots/plotly 2024-06-22T14:00:42,808 copying multiqc/plots/plotly/bar.py -> build/lib/multiqc/plots/plotly 2024-06-22T14:00:42,811 copying multiqc/plots/plotly/box.py -> build/lib/multiqc/plots/plotly 2024-06-22T14:00:42,814 copying multiqc/plots/plotly/heatmap.py -> build/lib/multiqc/plots/plotly 2024-06-22T14:00:42,816 copying multiqc/plots/plotly/line.py -> build/lib/multiqc/plots/plotly 2024-06-22T14:00:42,819 copying multiqc/plots/plotly/plot.py -> build/lib/multiqc/plots/plotly 2024-06-22T14:00:42,822 copying multiqc/plots/plotly/scatter.py -> build/lib/multiqc/plots/plotly 2024-06-22T14:00:42,824 copying multiqc/plots/plotly/table.py -> build/lib/multiqc/plots/plotly 2024-06-22T14:00:42,827 copying multiqc/plots/plotly/violin.py -> build/lib/multiqc/plots/plotly 2024-06-22T14:00:42,830 creating build/lib/multiqc/templates 2024-06-22T14:00:42,831 copying multiqc/templates/__init__.py -> build/lib/multiqc/templates 2024-06-22T14:00:42,833 creating build/lib/multiqc/templates/default 2024-06-22T14:00:42,834 copying multiqc/templates/default/__init__.py -> build/lib/multiqc/templates/default 2024-06-22T14:00:42,836 copying multiqc/templates/default/base.html -> build/lib/multiqc/templates/default 2024-06-22T14:00:42,838 copying multiqc/templates/default/content.html -> build/lib/multiqc/templates/default 2024-06-22T14:00:42,840 copying multiqc/templates/default/foot.html -> build/lib/multiqc/templates/default 2024-06-22T14:00:42,843 copying multiqc/templates/default/footer.html -> build/lib/multiqc/templates/default 2024-06-22T14:00:42,844 copying multiqc/templates/default/general_stats.html -> build/lib/multiqc/templates/default 2024-06-22T14:00:42,846 copying multiqc/templates/default/head.html -> build/lib/multiqc/templates/default 2024-06-22T14:00:42,848 copying multiqc/templates/default/header.html -> build/lib/multiqc/templates/default 2024-06-22T14:00:42,850 copying multiqc/templates/default/includes.html -> build/lib/multiqc/templates/default 2024-06-22T14:00:42,853 copying multiqc/templates/default/nav.html -> build/lib/multiqc/templates/default 2024-06-22T14:00:42,855 copying multiqc/templates/default/toolbox.html -> build/lib/multiqc/templates/default 2024-06-22T14:00:42,858 creating build/lib/multiqc/templates/default/assets 2024-06-22T14:00:42,858 creating build/lib/multiqc/templates/default/assets/css 2024-06-22T14:00:42,859 copying multiqc/templates/default/assets/css/bootstrap.min.css -> build/lib/multiqc/templates/default/assets/css 2024-06-22T14:00:42,863 copying multiqc/templates/default/assets/css/default_multiqc.css -> build/lib/multiqc/templates/default/assets/css 2024-06-22T14:00:42,866 copying multiqc/templates/default/assets/css/jquery.toast.css -> build/lib/multiqc/templates/default/assets/css 2024-06-22T14:00:42,868 creating build/lib/multiqc/templates/default/assets/fonts 2024-06-22T14:00:42,869 copying multiqc/templates/default/assets/fonts/glyphicons-halflings-regular.eot -> build/lib/multiqc/templates/default/assets/fonts 2024-06-22T14:00:42,872 copying multiqc/templates/default/assets/fonts/glyphicons-halflings-regular.svg -> build/lib/multiqc/templates/default/assets/fonts 2024-06-22T14:00:42,876 copying multiqc/templates/default/assets/fonts/glyphicons-halflings-regular.ttf -> build/lib/multiqc/templates/default/assets/fonts 2024-06-22T14:00:42,879 copying multiqc/templates/default/assets/fonts/glyphicons-halflings-regular.woff -> build/lib/multiqc/templates/default/assets/fonts 2024-06-22T14:00:42,882 copying multiqc/templates/default/assets/fonts/glyphicons-halflings-regular.woff2 -> build/lib/multiqc/templates/default/assets/fonts 2024-06-22T14:00:42,884 creating build/lib/multiqc/templates/default/assets/img 2024-06-22T14:00:42,885 copying multiqc/templates/default/assets/img/MultiQC_logo.png -> build/lib/multiqc/templates/default/assets/img 2024-06-22T14:00:42,888 copying multiqc/templates/default/assets/img/MultiQC_logo_dark.svg -> build/lib/multiqc/templates/default/assets/img 2024-06-22T14:00:42,890 copying multiqc/templates/default/assets/img/favicon-16x16.png -> build/lib/multiqc/templates/default/assets/img 2024-06-22T14:00:42,893 copying multiqc/templates/default/assets/img/favicon-32x32.png -> build/lib/multiqc/templates/default/assets/img 2024-06-22T14:00:42,895 copying multiqc/templates/default/assets/img/favicon-96x96.png -> build/lib/multiqc/templates/default/assets/img 2024-06-22T14:00:42,897 copying multiqc/templates/default/assets/img/seqera_logo.png -> build/lib/multiqc/templates/default/assets/img 2024-06-22T14:00:42,899 copying multiqc/templates/default/assets/img/seqera_logo_mono.png -> build/lib/multiqc/templates/default/assets/img 2024-06-22T14:00:42,902 creating build/lib/multiqc/templates/default/assets/js 2024-06-22T14:00:42,903 copying multiqc/templates/default/assets/js/decompress.js -> build/lib/multiqc/templates/default/assets/js 2024-06-22T14:00:42,905 copying multiqc/templates/default/assets/js/flat.js -> build/lib/multiqc/templates/default/assets/js 2024-06-22T14:00:42,907 copying multiqc/templates/default/assets/js/multiqc.js -> build/lib/multiqc/templates/default/assets/js 2024-06-22T14:00:42,909 copying multiqc/templates/default/assets/js/plotting.js -> build/lib/multiqc/templates/default/assets/js 2024-06-22T14:00:42,912 copying multiqc/templates/default/assets/js/render.js -> build/lib/multiqc/templates/default/assets/js 2024-06-22T14:00:42,914 copying multiqc/templates/default/assets/js/tables.js -> build/lib/multiqc/templates/default/assets/js 2024-06-22T14:00:42,917 copying multiqc/templates/default/assets/js/toolbox.js -> build/lib/multiqc/templates/default/assets/js 2024-06-22T14:00:42,920 creating build/lib/multiqc/templates/default/assets/js/packages 2024-06-22T14:00:42,921 copying multiqc/templates/default/assets/js/packages/FileSaver.min.js -> build/lib/multiqc/templates/default/assets/js/packages 2024-06-22T14:00:42,923 copying multiqc/templates/default/assets/js/packages/bootstrap.min.js -> build/lib/multiqc/templates/default/assets/js/packages 2024-06-22T14:00:42,926 copying multiqc/templates/default/assets/js/packages/jquery-3.1.1.min.js -> build/lib/multiqc/templates/default/assets/js/packages 2024-06-22T14:00:42,930 copying multiqc/templates/default/assets/js/packages/jquery-ui.min.js -> build/lib/multiqc/templates/default/assets/js/packages 2024-06-22T14:00:42,933 copying multiqc/templates/default/assets/js/packages/jquery.tablesorter.min.js -> build/lib/multiqc/templates/default/assets/js/packages 2024-06-22T14:00:42,936 copying multiqc/templates/default/assets/js/packages/jquery.toast.min.js -> build/lib/multiqc/templates/default/assets/js/packages 2024-06-22T14:00:42,938 copying multiqc/templates/default/assets/js/packages/jszip.min.js -> build/lib/multiqc/templates/default/assets/js/packages 2024-06-22T14:00:42,942 copying multiqc/templates/default/assets/js/packages/pako_inflate.min.js -> build/lib/multiqc/templates/default/assets/js/packages 2024-06-22T14:00:42,945 copying multiqc/templates/default/assets/js/packages/plotly-2.27.0.js -> build/lib/multiqc/templates/default/assets/js/packages 2024-06-22T14:00:43,064 copying multiqc/templates/default/assets/js/packages/plotly-2.27.0.min.js -> build/lib/multiqc/templates/default/assets/js/packages 2024-06-22T14:00:43,114 creating build/lib/multiqc/templates/default/assets/js/plots 2024-06-22T14:00:43,115 copying multiqc/templates/default/assets/js/plots/bar.js -> build/lib/multiqc/templates/default/assets/js/plots 2024-06-22T14:00:43,118 copying multiqc/templates/default/assets/js/plots/box.js -> build/lib/multiqc/templates/default/assets/js/plots 2024-06-22T14:00:43,120 copying multiqc/templates/default/assets/js/plots/heatmap.js -> build/lib/multiqc/templates/default/assets/js/plots 2024-06-22T14:00:43,121 copying multiqc/templates/default/assets/js/plots/line.js -> build/lib/multiqc/templates/default/assets/js/plots 2024-06-22T14:00:43,123 copying multiqc/templates/default/assets/js/plots/scatter.js -> build/lib/multiqc/templates/default/assets/js/plots 2024-06-22T14:00:43,125 copying multiqc/templates/default/assets/js/plots/violin.js -> build/lib/multiqc/templates/default/assets/js/plots 2024-06-22T14:00:43,128 creating build/lib/multiqc/templates/gathered 2024-06-22T14:00:43,129 copying multiqc/templates/gathered/__init__.py -> build/lib/multiqc/templates/gathered 2024-06-22T14:00:43,131 copying multiqc/templates/gathered/content.html -> build/lib/multiqc/templates/gathered 2024-06-22T14:00:43,133 copying multiqc/templates/gathered/nav.html -> build/lib/multiqc/templates/gathered 2024-06-22T14:00:43,135 creating build/lib/multiqc/templates/geo 2024-06-22T14:00:43,136 copying multiqc/templates/geo/__init__.py -> build/lib/multiqc/templates/geo 2024-06-22T14:00:43,138 copying multiqc/templates/geo/includes.html -> build/lib/multiqc/templates/geo 2024-06-22T14:00:43,141 creating build/lib/multiqc/templates/geo/assets 2024-06-22T14:00:43,141 creating build/lib/multiqc/templates/geo/assets/css 2024-06-22T14:00:43,142 copying multiqc/templates/geo/assets/css/bootstrap.min.css -> build/lib/multiqc/templates/geo/assets/css 2024-06-22T14:00:43,146 creating build/lib/multiqc/templates/geo/assets/img 2024-06-22T14:00:43,147 copying multiqc/templates/geo/assets/img/emailme.gif -> build/lib/multiqc/templates/geo/assets/img 2024-06-22T14:00:43,150 copying multiqc/templates/geo/assets/img/flames.gif -> build/lib/multiqc/templates/geo/assets/img 2024-06-22T14:00:43,153 copying multiqc/templates/geo/assets/img/glyphicons-halflings-white.png -> build/lib/multiqc/templates/geo/assets/img 2024-06-22T14:00:43,155 copying multiqc/templates/geo/assets/img/glyphicons-halflings.png -> build/lib/multiqc/templates/geo/assets/img 2024-06-22T14:00:43,158 copying multiqc/templates/geo/assets/img/hot.gif -> build/lib/multiqc/templates/geo/assets/img 2024-06-22T14:00:43,160 copying multiqc/templates/geo/assets/img/mchammer.gif -> build/lib/multiqc/templates/geo/assets/img 2024-06-22T14:00:43,164 copying multiqc/templates/geo/assets/img/microfab.gif -> build/lib/multiqc/templates/geo/assets/img 2024-06-22T14:00:43,166 copying multiqc/templates/geo/assets/img/new.gif -> build/lib/multiqc/templates/geo/assets/img 2024-06-22T14:00:43,168 copying multiqc/templates/geo/assets/img/new2.gif -> build/lib/multiqc/templates/geo/assets/img 2024-06-22T14:00:43,170 copying multiqc/templates/geo/assets/img/progress.gif -> build/lib/multiqc/templates/geo/assets/img 2024-06-22T14:00:43,172 copying multiqc/templates/geo/assets/img/rainbow.gif -> build/lib/multiqc/templates/geo/assets/img 2024-06-22T14:00:43,175 copying multiqc/templates/geo/assets/img/stars.gif -> build/lib/multiqc/templates/geo/assets/img 2024-06-22T14:00:43,177 creating build/lib/multiqc/templates/sections 2024-06-22T14:00:43,178 copying multiqc/templates/sections/__init__.py -> build/lib/multiqc/templates/sections 2024-06-22T14:00:43,180 copying multiqc/templates/sections/content.html -> build/lib/multiqc/templates/sections 2024-06-22T14:00:43,182 creating build/lib/multiqc/templates/simple 2024-06-22T14:00:43,182 copying multiqc/templates/simple/__init__.py -> build/lib/multiqc/templates/simple 2024-06-22T14:00:43,185 copying multiqc/templates/simple/foot.html -> build/lib/multiqc/templates/simple 2024-06-22T14:00:43,186 copying multiqc/templates/simple/header.html -> build/lib/multiqc/templates/simple 2024-06-22T14:00:43,188 copying multiqc/templates/simple/includes.html -> build/lib/multiqc/templates/simple 2024-06-22T14:00:43,190 copying multiqc/templates/simple/nav.html -> build/lib/multiqc/templates/simple 2024-06-22T14:00:43,193 copying multiqc/templates/simple/toolbox.html -> build/lib/multiqc/templates/simple 2024-06-22T14:00:43,195 creating build/lib/multiqc/utils 2024-06-22T14:00:43,197 copying multiqc/utils/__init__.py -> build/lib/multiqc/utils 2024-06-22T14:00:43,199 copying multiqc/utils/config.py -> build/lib/multiqc/utils 2024-06-22T14:00:43,201 copying multiqc/utils/megaqc.py -> build/lib/multiqc/utils 2024-06-22T14:00:43,203 copying multiqc/utils/mqc_colour.py -> build/lib/multiqc/utils 2024-06-22T14:00:43,206 copying multiqc/utils/report.py -> build/lib/multiqc/utils 2024-06-22T14:00:43,209 copying multiqc/utils/testing.py -> build/lib/multiqc/utils 2024-06-22T14:00:43,211 copying multiqc/utils/util_functions.py -> build/lib/multiqc/utils 2024-06-22T14:00:43,222 installing to build/bdist.linux-armv7l/wheel 2024-06-22T14:00:43,223 running install 2024-06-22T14:00:43,247 running install_lib 2024-06-22T14:00:43,252 creating build/bdist.linux-armv7l 2024-06-22T14:00:43,253 creating build/bdist.linux-armv7l/wheel 2024-06-22T14:00:43,255 creating build/bdist.linux-armv7l/wheel/multiqc 2024-06-22T14:00:43,256 copying build/lib/multiqc/interactive.py -> build/bdist.linux-armv7l/wheel/multiqc 2024-06-22T14:00:43,260 creating build/bdist.linux-armv7l/wheel/multiqc/plots 2024-06-22T14:00:43,261 copying build/lib/multiqc/plots/table_object.py -> build/bdist.linux-armv7l/wheel/multiqc/plots 2024-06-22T14:00:43,265 copying build/lib/multiqc/plots/heatmap.py -> build/bdist.linux-armv7l/wheel/multiqc/plots 2024-06-22T14:00:43,267 copying build/lib/multiqc/plots/violin.py -> build/bdist.linux-armv7l/wheel/multiqc/plots 2024-06-22T14:00:43,270 copying build/lib/multiqc/plots/linegraph.py -> build/bdist.linux-armv7l/wheel/multiqc/plots 2024-06-22T14:00:43,273 copying build/lib/multiqc/plots/scatter.py -> build/bdist.linux-armv7l/wheel/multiqc/plots 2024-06-22T14:00:43,275 copying build/lib/multiqc/plots/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/plots 2024-06-22T14:00:43,277 copying build/lib/multiqc/plots/bargraph.py -> build/bdist.linux-armv7l/wheel/multiqc/plots 2024-06-22T14:00:43,280 creating build/bdist.linux-armv7l/wheel/multiqc/plots/plotly 2024-06-22T14:00:43,282 copying build/lib/multiqc/plots/plotly/bar.py -> build/bdist.linux-armv7l/wheel/multiqc/plots/plotly 2024-06-22T14:00:43,285 copying build/lib/multiqc/plots/plotly/heatmap.py -> build/bdist.linux-armv7l/wheel/multiqc/plots/plotly 2024-06-22T14:00:43,287 copying build/lib/multiqc/plots/plotly/violin.py -> build/bdist.linux-armv7l/wheel/multiqc/plots/plotly 2024-06-22T14:00:43,291 copying build/lib/multiqc/plots/plotly/plot.py -> build/bdist.linux-armv7l/wheel/multiqc/plots/plotly 2024-06-22T14:00:43,294 copying build/lib/multiqc/plots/plotly/scatter.py -> build/bdist.linux-armv7l/wheel/multiqc/plots/plotly 2024-06-22T14:00:43,297 copying build/lib/multiqc/plots/plotly/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/plots/plotly 2024-06-22T14:00:43,299 copying build/lib/multiqc/plots/plotly/line.py -> build/bdist.linux-armv7l/wheel/multiqc/plots/plotly 2024-06-22T14:00:43,302 copying build/lib/multiqc/plots/plotly/table.py -> build/bdist.linux-armv7l/wheel/multiqc/plots/plotly 2024-06-22T14:00:43,306 copying build/lib/multiqc/plots/plotly/box.py -> build/bdist.linux-armv7l/wheel/multiqc/plots/plotly 2024-06-22T14:00:43,308 copying build/lib/multiqc/plots/table.py -> build/bdist.linux-armv7l/wheel/multiqc/plots 2024-06-22T14:00:43,311 copying build/lib/multiqc/plots/box.py -> build/bdist.linux-armv7l/wheel/multiqc/plots 2024-06-22T14:00:43,313 copying build/lib/multiqc/search_patterns.yaml -> build/bdist.linux-armv7l/wheel/multiqc 2024-06-22T14:00:43,316 copying build/lib/multiqc/validation.py -> build/bdist.linux-armv7l/wheel/multiqc 2024-06-22T14:00:43,320 creating build/bdist.linux-armv7l/wheel/multiqc/core 2024-06-22T14:00:43,321 copying build/lib/multiqc/core/init_log.py -> build/bdist.linux-armv7l/wheel/multiqc/core 2024-06-22T14:00:43,324 copying build/lib/multiqc/core/exceptions.py -> build/bdist.linux-armv7l/wheel/multiqc/core 2024-06-22T14:00:43,326 copying build/lib/multiqc/core/update_config.py -> build/bdist.linux-armv7l/wheel/multiqc/core 2024-06-22T14:00:43,329 copying build/lib/multiqc/core/file_search.py -> build/bdist.linux-armv7l/wheel/multiqc/core 2024-06-22T14:00:43,332 copying build/lib/multiqc/core/exec_modules.py -> build/bdist.linux-armv7l/wheel/multiqc/core 2024-06-22T14:00:43,334 copying build/lib/multiqc/core/software_versions.py -> build/bdist.linux-armv7l/wheel/multiqc/core 2024-06-22T14:00:43,337 copying build/lib/multiqc/core/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/core 2024-06-22T14:00:43,339 copying build/lib/multiqc/core/version_check.py -> build/bdist.linux-armv7l/wheel/multiqc/core 2024-06-22T14:00:43,341 copying build/lib/multiqc/core/write_results.py -> build/bdist.linux-armv7l/wheel/multiqc/core 2024-06-22T14:00:43,344 copying build/lib/multiqc/core/plugin_hooks.py -> build/bdist.linux-armv7l/wheel/multiqc/core 2024-06-22T14:00:43,347 copying build/lib/multiqc/core/strict_helpers.py -> build/bdist.linux-armv7l/wheel/multiqc/core 2024-06-22T14:00:43,349 copying build/lib/multiqc/config_defaults.yaml -> build/bdist.linux-armv7l/wheel/multiqc 2024-06-22T14:00:43,353 creating build/bdist.linux-armv7l/wheel/multiqc/utils 2024-06-22T14:00:43,354 copying build/lib/multiqc/utils/testing.py -> build/bdist.linux-armv7l/wheel/multiqc/utils 2024-06-22T14:00:43,356 copying build/lib/multiqc/utils/mqc_colour.py -> build/bdist.linux-armv7l/wheel/multiqc/utils 2024-06-22T14:00:43,359 copying build/lib/multiqc/utils/report.py -> build/bdist.linux-armv7l/wheel/multiqc/utils 2024-06-22T14:00:43,361 copying build/lib/multiqc/utils/util_functions.py -> build/bdist.linux-armv7l/wheel/multiqc/utils 2024-06-22T14:00:43,364 copying build/lib/multiqc/utils/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/utils 2024-06-22T14:00:43,366 copying build/lib/multiqc/utils/megaqc.py -> build/bdist.linux-armv7l/wheel/multiqc/utils 2024-06-22T14:00:43,368 copying build/lib/multiqc/utils/config.py -> build/bdist.linux-armv7l/wheel/multiqc/utils 2024-06-22T14:00:43,370 copying build/lib/multiqc/report.py -> build/bdist.linux-armv7l/wheel/multiqc 2024-06-22T14:00:43,373 copying build/lib/multiqc/__main__.py -> build/bdist.linux-armv7l/wheel/multiqc 2024-06-22T14:00:43,376 copying build/lib/multiqc/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc 2024-06-22T14:00:43,378 copying build/lib/multiqc/multiqc.py -> build/bdist.linux-armv7l/wheel/multiqc 2024-06-22T14:00:43,380 copying build/lib/multiqc/config.py -> build/bdist.linux-armv7l/wheel/multiqc 2024-06-22T14:00:43,384 creating build/bdist.linux-armv7l/wheel/multiqc/templates 2024-06-22T14:00:43,386 creating build/bdist.linux-armv7l/wheel/multiqc/templates/gathered 2024-06-22T14:00:43,387 copying build/lib/multiqc/templates/gathered/nav.html -> build/bdist.linux-armv7l/wheel/multiqc/templates/gathered 2024-06-22T14:00:43,390 copying build/lib/multiqc/templates/gathered/content.html -> build/bdist.linux-armv7l/wheel/multiqc/templates/gathered 2024-06-22T14:00:43,392 copying build/lib/multiqc/templates/gathered/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/templates/gathered 2024-06-22T14:00:43,395 creating build/bdist.linux-armv7l/wheel/multiqc/templates/default 2024-06-22T14:00:43,396 copying build/lib/multiqc/templates/default/footer.html -> build/bdist.linux-armv7l/wheel/multiqc/templates/default 2024-06-22T14:00:43,399 creating build/bdist.linux-armv7l/wheel/multiqc/templates/default/assets 2024-06-22T14:00:43,401 creating build/bdist.linux-armv7l/wheel/multiqc/templates/default/assets/img 2024-06-22T14:00:43,402 copying build/lib/multiqc/templates/default/assets/img/favicon-16x16.png -> build/bdist.linux-armv7l/wheel/multiqc/templates/default/assets/img 2024-06-22T14:00:43,405 copying build/lib/multiqc/templates/default/assets/img/seqera_logo_mono.png -> build/bdist.linux-armv7l/wheel/multiqc/templates/default/assets/img 2024-06-22T14:00:43,407 copying build/lib/multiqc/templates/default/assets/img/favicon-32x32.png -> build/bdist.linux-armv7l/wheel/multiqc/templates/default/assets/img 2024-06-22T14:00:43,409 copying build/lib/multiqc/templates/default/assets/img/seqera_logo.png -> build/bdist.linux-armv7l/wheel/multiqc/templates/default/assets/img 2024-06-22T14:00:43,412 copying build/lib/multiqc/templates/default/assets/img/favicon-96x96.png -> build/bdist.linux-armv7l/wheel/multiqc/templates/default/assets/img 2024-06-22T14:00:43,414 copying build/lib/multiqc/templates/default/assets/img/MultiQC_logo_dark.svg -> build/bdist.linux-armv7l/wheel/multiqc/templates/default/assets/img 2024-06-22T14:00:43,417 copying build/lib/multiqc/templates/default/assets/img/MultiQC_logo.png -> build/bdist.linux-armv7l/wheel/multiqc/templates/default/assets/img 2024-06-22T14:00:43,421 creating build/bdist.linux-armv7l/wheel/multiqc/templates/default/assets/fonts 2024-06-22T14:00:43,422 copying build/lib/multiqc/templates/default/assets/fonts/glyphicons-halflings-regular.woff -> build/bdist.linux-armv7l/wheel/multiqc/templates/default/assets/fonts 2024-06-22T14:00:43,425 copying build/lib/multiqc/templates/default/assets/fonts/glyphicons-halflings-regular.svg -> build/bdist.linux-armv7l/wheel/multiqc/templates/default/assets/fonts 2024-06-22T14:00:43,431 copying build/lib/multiqc/templates/default/assets/fonts/glyphicons-halflings-regular.ttf -> build/bdist.linux-armv7l/wheel/multiqc/templates/default/assets/fonts 2024-06-22T14:00:43,435 copying build/lib/multiqc/templates/default/assets/fonts/glyphicons-halflings-regular.eot -> build/bdist.linux-armv7l/wheel/multiqc/templates/default/assets/fonts 2024-06-22T14:00:43,438 copying build/lib/multiqc/templates/default/assets/fonts/glyphicons-halflings-regular.woff2 -> build/bdist.linux-armv7l/wheel/multiqc/templates/default/assets/fonts 2024-06-22T14:00:43,441 creating build/bdist.linux-armv7l/wheel/multiqc/templates/default/assets/css 2024-06-22T14:00:43,443 copying build/lib/multiqc/templates/default/assets/css/jquery.toast.css -> build/bdist.linux-armv7l/wheel/multiqc/templates/default/assets/css 2024-06-22T14:00:43,446 copying build/lib/multiqc/templates/default/assets/css/default_multiqc.css -> build/bdist.linux-armv7l/wheel/multiqc/templates/default/assets/css 2024-06-22T14:00:43,449 copying build/lib/multiqc/templates/default/assets/css/bootstrap.min.css -> build/bdist.linux-armv7l/wheel/multiqc/templates/default/assets/css 2024-06-22T14:00:43,454 creating build/bdist.linux-armv7l/wheel/multiqc/templates/default/assets/js 2024-06-22T14:00:43,455 creating build/bdist.linux-armv7l/wheel/multiqc/templates/default/assets/js/plots 2024-06-22T14:00:43,456 copying build/lib/multiqc/templates/default/assets/js/plots/box.js -> build/bdist.linux-armv7l/wheel/multiqc/templates/default/assets/js/plots 2024-06-22T14:00:43,458 copying build/lib/multiqc/templates/default/assets/js/plots/violin.js -> build/bdist.linux-armv7l/wheel/multiqc/templates/default/assets/js/plots 2024-06-22T14:00:43,460 copying build/lib/multiqc/templates/default/assets/js/plots/line.js -> build/bdist.linux-armv7l/wheel/multiqc/templates/default/assets/js/plots 2024-06-22T14:00:43,463 copying build/lib/multiqc/templates/default/assets/js/plots/bar.js -> build/bdist.linux-armv7l/wheel/multiqc/templates/default/assets/js/plots 2024-06-22T14:00:43,464 copying build/lib/multiqc/templates/default/assets/js/plots/heatmap.js -> build/bdist.linux-armv7l/wheel/multiqc/templates/default/assets/js/plots 2024-06-22T14:00:43,466 copying build/lib/multiqc/templates/default/assets/js/plots/scatter.js -> build/bdist.linux-armv7l/wheel/multiqc/templates/default/assets/js/plots 2024-06-22T14:00:43,468 copying build/lib/multiqc/templates/default/assets/js/flat.js -> build/bdist.linux-armv7l/wheel/multiqc/templates/default/assets/js 2024-06-22T14:00:43,470 copying build/lib/multiqc/templates/default/assets/js/plotting.js -> build/bdist.linux-armv7l/wheel/multiqc/templates/default/assets/js 2024-06-22T14:00:43,472 copying build/lib/multiqc/templates/default/assets/js/tables.js -> build/bdist.linux-armv7l/wheel/multiqc/templates/default/assets/js 2024-06-22T14:00:43,474 copying build/lib/multiqc/templates/default/assets/js/render.js -> build/bdist.linux-armv7l/wheel/multiqc/templates/default/assets/js 2024-06-22T14:00:43,477 copying build/lib/multiqc/templates/default/assets/js/multiqc.js -> build/bdist.linux-armv7l/wheel/multiqc/templates/default/assets/js 2024-06-22T14:00:43,478 copying build/lib/multiqc/templates/default/assets/js/toolbox.js -> build/bdist.linux-armv7l/wheel/multiqc/templates/default/assets/js 2024-06-22T14:00:43,481 copying build/lib/multiqc/templates/default/assets/js/decompress.js -> build/bdist.linux-armv7l/wheel/multiqc/templates/default/assets/js 2024-06-22T14:00:43,484 creating build/bdist.linux-armv7l/wheel/multiqc/templates/default/assets/js/packages 2024-06-22T14:00:43,485 copying build/lib/multiqc/templates/default/assets/js/packages/plotly-2.27.0.js -> build/bdist.linux-armv7l/wheel/multiqc/templates/default/assets/js/packages 2024-06-22T14:00:43,604 copying build/lib/multiqc/templates/default/assets/js/packages/bootstrap.min.js -> build/bdist.linux-armv7l/wheel/multiqc/templates/default/assets/js/packages 2024-06-22T14:00:43,607 copying build/lib/multiqc/templates/default/assets/js/packages/jquery.tablesorter.min.js -> build/bdist.linux-armv7l/wheel/multiqc/templates/default/assets/js/packages 2024-06-22T14:00:43,610 copying build/lib/multiqc/templates/default/assets/js/packages/jquery-ui.min.js -> build/bdist.linux-armv7l/wheel/multiqc/templates/default/assets/js/packages 2024-06-22T14:00:43,613 copying build/lib/multiqc/templates/default/assets/js/packages/pako_inflate.min.js -> build/bdist.linux-armv7l/wheel/multiqc/templates/default/assets/js/packages 2024-06-22T14:00:43,616 copying build/lib/multiqc/templates/default/assets/js/packages/FileSaver.min.js -> build/bdist.linux-armv7l/wheel/multiqc/templates/default/assets/js/packages 2024-06-22T14:00:43,619 copying build/lib/multiqc/templates/default/assets/js/packages/plotly-2.27.0.min.js -> build/bdist.linux-armv7l/wheel/multiqc/templates/default/assets/js/packages 2024-06-22T14:00:43,676 copying build/lib/multiqc/templates/default/assets/js/packages/jquery.toast.min.js -> build/bdist.linux-armv7l/wheel/multiqc/templates/default/assets/js/packages 2024-06-22T14:00:43,678 copying build/lib/multiqc/templates/default/assets/js/packages/jszip.min.js -> build/bdist.linux-armv7l/wheel/multiqc/templates/default/assets/js/packages 2024-06-22T14:00:43,682 copying build/lib/multiqc/templates/default/assets/js/packages/jquery-3.1.1.min.js -> build/bdist.linux-armv7l/wheel/multiqc/templates/default/assets/js/packages 2024-06-22T14:00:43,686 copying build/lib/multiqc/templates/default/nav.html -> build/bdist.linux-armv7l/wheel/multiqc/templates/default 2024-06-22T14:00:43,688 copying build/lib/multiqc/templates/default/toolbox.html -> build/bdist.linux-armv7l/wheel/multiqc/templates/default 2024-06-22T14:00:43,691 copying build/lib/multiqc/templates/default/content.html -> build/bdist.linux-armv7l/wheel/multiqc/templates/default 2024-06-22T14:00:43,693 copying build/lib/multiqc/templates/default/head.html -> build/bdist.linux-armv7l/wheel/multiqc/templates/default 2024-06-22T14:00:43,695 copying build/lib/multiqc/templates/default/foot.html -> build/bdist.linux-armv7l/wheel/multiqc/templates/default 2024-06-22T14:00:43,697 copying build/lib/multiqc/templates/default/general_stats.html -> build/bdist.linux-armv7l/wheel/multiqc/templates/default 2024-06-22T14:00:43,699 copying build/lib/multiqc/templates/default/includes.html -> build/bdist.linux-armv7l/wheel/multiqc/templates/default 2024-06-22T14:00:43,701 copying build/lib/multiqc/templates/default/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/templates/default 2024-06-22T14:00:43,703 copying build/lib/multiqc/templates/default/base.html -> build/bdist.linux-armv7l/wheel/multiqc/templates/default 2024-06-22T14:00:43,705 copying build/lib/multiqc/templates/default/header.html -> build/bdist.linux-armv7l/wheel/multiqc/templates/default 2024-06-22T14:00:43,707 copying build/lib/multiqc/templates/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/templates 2024-06-22T14:00:43,709 creating build/bdist.linux-armv7l/wheel/multiqc/templates/geo 2024-06-22T14:00:43,710 creating build/bdist.linux-armv7l/wheel/multiqc/templates/geo/assets 2024-06-22T14:00:43,712 creating build/bdist.linux-armv7l/wheel/multiqc/templates/geo/assets/img 2024-06-22T14:00:43,713 copying build/lib/multiqc/templates/geo/assets/img/emailme.gif -> build/bdist.linux-armv7l/wheel/multiqc/templates/geo/assets/img 2024-06-22T14:00:43,715 copying build/lib/multiqc/templates/geo/assets/img/microfab.gif -> build/bdist.linux-armv7l/wheel/multiqc/templates/geo/assets/img 2024-06-22T14:00:43,718 copying build/lib/multiqc/templates/geo/assets/img/mchammer.gif -> build/bdist.linux-armv7l/wheel/multiqc/templates/geo/assets/img 2024-06-22T14:00:43,721 copying build/lib/multiqc/templates/geo/assets/img/flames.gif -> build/bdist.linux-armv7l/wheel/multiqc/templates/geo/assets/img 2024-06-22T14:00:43,724 copying build/lib/multiqc/templates/geo/assets/img/progress.gif -> build/bdist.linux-armv7l/wheel/multiqc/templates/geo/assets/img 2024-06-22T14:00:43,726 copying build/lib/multiqc/templates/geo/assets/img/glyphicons-halflings-white.png -> build/bdist.linux-armv7l/wheel/multiqc/templates/geo/assets/img 2024-06-22T14:00:43,728 copying build/lib/multiqc/templates/geo/assets/img/new2.gif -> build/bdist.linux-armv7l/wheel/multiqc/templates/geo/assets/img 2024-06-22T14:00:43,731 copying build/lib/multiqc/templates/geo/assets/img/glyphicons-halflings.png -> build/bdist.linux-armv7l/wheel/multiqc/templates/geo/assets/img 2024-06-22T14:00:43,733 copying build/lib/multiqc/templates/geo/assets/img/rainbow.gif -> build/bdist.linux-armv7l/wheel/multiqc/templates/geo/assets/img 2024-06-22T14:00:43,736 copying build/lib/multiqc/templates/geo/assets/img/stars.gif -> build/bdist.linux-armv7l/wheel/multiqc/templates/geo/assets/img 2024-06-22T14:00:43,738 copying build/lib/multiqc/templates/geo/assets/img/hot.gif -> build/bdist.linux-armv7l/wheel/multiqc/templates/geo/assets/img 2024-06-22T14:00:43,741 copying build/lib/multiqc/templates/geo/assets/img/new.gif -> build/bdist.linux-armv7l/wheel/multiqc/templates/geo/assets/img 2024-06-22T14:00:43,743 creating build/bdist.linux-armv7l/wheel/multiqc/templates/geo/assets/css 2024-06-22T14:00:43,744 copying build/lib/multiqc/templates/geo/assets/css/bootstrap.min.css -> build/bdist.linux-armv7l/wheel/multiqc/templates/geo/assets/css 2024-06-22T14:00:43,749 copying build/lib/multiqc/templates/geo/includes.html -> build/bdist.linux-armv7l/wheel/multiqc/templates/geo 2024-06-22T14:00:43,751 copying build/lib/multiqc/templates/geo/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/templates/geo 2024-06-22T14:00:43,753 creating build/bdist.linux-armv7l/wheel/multiqc/templates/sections 2024-06-22T14:00:43,754 copying build/lib/multiqc/templates/sections/content.html -> build/bdist.linux-armv7l/wheel/multiqc/templates/sections 2024-06-22T14:00:43,756 copying build/lib/multiqc/templates/sections/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/templates/sections 2024-06-22T14:00:43,758 creating build/bdist.linux-armv7l/wheel/multiqc/templates/simple 2024-06-22T14:00:43,759 copying build/lib/multiqc/templates/simple/nav.html -> build/bdist.linux-armv7l/wheel/multiqc/templates/simple 2024-06-22T14:00:43,761 copying build/lib/multiqc/templates/simple/toolbox.html -> build/bdist.linux-armv7l/wheel/multiqc/templates/simple 2024-06-22T14:00:43,763 copying build/lib/multiqc/templates/simple/foot.html -> build/bdist.linux-armv7l/wheel/multiqc/templates/simple 2024-06-22T14:00:43,765 copying build/lib/multiqc/templates/simple/includes.html -> build/bdist.linux-armv7l/wheel/multiqc/templates/simple 2024-06-22T14:00:43,767 copying build/lib/multiqc/templates/simple/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/templates/simple 2024-06-22T14:00:43,768 copying build/lib/multiqc/templates/simple/header.html -> build/bdist.linux-armv7l/wheel/multiqc/templates/simple 2024-06-22T14:00:43,770 copying build/lib/multiqc/base_module.py -> build/bdist.linux-armv7l/wheel/multiqc 2024-06-22T14:00:43,776 creating build/bdist.linux-armv7l/wheel/multiqc/modules 2024-06-22T14:00:43,777 creating build/bdist.linux-armv7l/wheel/multiqc/modules/pbmarkdup 2024-06-22T14:00:43,778 copying build/lib/multiqc/modules/pbmarkdup/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/pbmarkdup 2024-06-22T14:00:43,780 copying build/lib/multiqc/modules/pbmarkdup/pbmarkdup.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/pbmarkdup 2024-06-22T14:00:43,783 creating build/bdist.linux-armv7l/wheel/multiqc/modules/optitype 2024-06-22T14:00:43,784 copying build/lib/multiqc/modules/optitype/optitype.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/optitype 2024-06-22T14:00:43,786 copying build/lib/multiqc/modules/optitype/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/optitype 2024-06-22T14:00:43,789 creating build/bdist.linux-armv7l/wheel/multiqc/modules/hisat2 2024-06-22T14:00:43,790 copying build/lib/multiqc/modules/hisat2/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/hisat2 2024-06-22T14:00:43,791 copying build/lib/multiqc/modules/hisat2/hisat2.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/hisat2 2024-06-22T14:00:43,794 creating build/bdist.linux-armv7l/wheel/multiqc/modules/slamdunk 2024-06-22T14:00:43,795 copying build/lib/multiqc/modules/slamdunk/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/slamdunk 2024-06-22T14:00:43,797 copying build/lib/multiqc/modules/slamdunk/slamdunk.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/slamdunk 2024-06-22T14:00:43,801 creating build/bdist.linux-armv7l/wheel/multiqc/modules/dragen_fastqc 2024-06-22T14:00:43,802 creating build/bdist.linux-armv7l/wheel/multiqc/modules/dragen_fastqc/assets 2024-06-22T14:00:43,804 creating build/bdist.linux-armv7l/wheel/multiqc/modules/dragen_fastqc/assets/js 2024-06-22T14:00:43,805 copying build/lib/multiqc/modules/dragen_fastqc/assets/js/multiqc_dragen_fastqc.js -> build/bdist.linux-armv7l/wheel/multiqc/modules/dragen_fastqc/assets/js 2024-06-22T14:00:43,808 copying build/lib/multiqc/modules/dragen_fastqc/content_metrics.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/dragen_fastqc 2024-06-22T14:00:43,811 copying build/lib/multiqc/modules/dragen_fastqc/util.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/dragen_fastqc 2024-06-22T14:00:43,813 copying build/lib/multiqc/modules/dragen_fastqc/dragen_fastqc.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/dragen_fastqc 2024-06-22T14:00:43,815 copying build/lib/multiqc/modules/dragen_fastqc/gc_metrics.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/dragen_fastqc 2024-06-22T14:00:43,817 copying build/lib/multiqc/modules/dragen_fastqc/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/dragen_fastqc 2024-06-22T14:00:43,818 copying build/lib/multiqc/modules/dragen_fastqc/read_metrics.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/dragen_fastqc 2024-06-22T14:00:43,821 copying build/lib/multiqc/modules/dragen_fastqc/base_metrics.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/dragen_fastqc 2024-06-22T14:00:43,823 creating build/bdist.linux-armv7l/wheel/multiqc/modules/preseq 2024-06-22T14:00:43,824 copying build/lib/multiqc/modules/preseq/preseq.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/preseq 2024-06-22T14:00:43,827 copying build/lib/multiqc/modules/preseq/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/preseq 2024-06-22T14:00:43,829 creating build/bdist.linux-armv7l/wheel/multiqc/modules/adapterremoval 2024-06-22T14:00:43,830 copying build/lib/multiqc/modules/adapterremoval/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/adapterremoval 2024-06-22T14:00:43,832 copying build/lib/multiqc/modules/adapterremoval/adapterremoval.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/adapterremoval 2024-06-22T14:00:43,835 creating build/bdist.linux-armv7l/wheel/multiqc/modules/snpsplit 2024-06-22T14:00:43,836 copying build/lib/multiqc/modules/snpsplit/snpsplit.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/snpsplit 2024-06-22T14:00:43,840 copying build/lib/multiqc/modules/snpsplit/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/snpsplit 2024-06-22T14:00:43,842 creating build/bdist.linux-armv7l/wheel/multiqc/modules/snpeff 2024-06-22T14:00:43,843 copying build/lib/multiqc/modules/snpeff/snpeff.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/snpeff 2024-06-22T14:00:43,846 copying build/lib/multiqc/modules/snpeff/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/snpeff 2024-06-22T14:00:43,848 creating build/bdist.linux-armv7l/wheel/multiqc/modules/freyja 2024-06-22T14:00:43,849 copying build/lib/multiqc/modules/freyja/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/freyja 2024-06-22T14:00:43,851 copying build/lib/multiqc/modules/freyja/freyja.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/freyja 2024-06-22T14:00:43,854 creating build/bdist.linux-armv7l/wheel/multiqc/modules/rockhopper 2024-06-22T14:00:43,855 copying build/lib/multiqc/modules/rockhopper/rockhopper.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/rockhopper 2024-06-22T14:00:43,858 copying build/lib/multiqc/modules/rockhopper/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/rockhopper 2024-06-22T14:00:43,860 creating build/bdist.linux-armv7l/wheel/multiqc/modules/peddy 2024-06-22T14:00:43,861 copying build/lib/multiqc/modules/peddy/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/peddy 2024-06-22T14:00:43,863 copying build/lib/multiqc/modules/peddy/peddy.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/peddy 2024-06-22T14:00:43,866 creating build/bdist.linux-armv7l/wheel/multiqc/modules/nanostat 2024-06-22T14:00:43,867 copying build/lib/multiqc/modules/nanostat/nanostat.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/nanostat 2024-06-22T14:00:43,870 copying build/lib/multiqc/modules/nanostat/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/nanostat 2024-06-22T14:00:43,872 creating build/bdist.linux-armv7l/wheel/multiqc/modules/sickle 2024-06-22T14:00:43,873 copying build/lib/multiqc/modules/sickle/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/sickle 2024-06-22T14:00:43,874 copying build/lib/multiqc/modules/sickle/sickle.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/sickle 2024-06-22T14:00:43,877 creating build/bdist.linux-armv7l/wheel/multiqc/modules/umitools 2024-06-22T14:00:43,878 copying build/lib/multiqc/modules/umitools/umitools.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/umitools 2024-06-22T14:00:43,880 copying build/lib/multiqc/modules/umitools/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/umitools 2024-06-22T14:00:43,882 creating build/bdist.linux-armv7l/wheel/multiqc/modules/hicexplorer 2024-06-22T14:00:43,883 copying build/lib/multiqc/modules/hicexplorer/hicexplorer.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/hicexplorer 2024-06-22T14:00:43,886 copying build/lib/multiqc/modules/hicexplorer/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/hicexplorer 2024-06-22T14:00:43,888 creating build/bdist.linux-armv7l/wheel/multiqc/modules/biscuit 2024-06-22T14:00:43,889 copying build/lib/multiqc/modules/biscuit/biscuit.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/biscuit 2024-06-22T14:00:43,892 copying build/lib/multiqc/modules/biscuit/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/biscuit 2024-06-22T14:00:43,894 creating build/bdist.linux-armv7l/wheel/multiqc/modules/kaiju 2024-06-22T14:00:43,895 copying build/lib/multiqc/modules/kaiju/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/kaiju 2024-06-22T14:00:43,897 copying build/lib/multiqc/modules/kaiju/kaiju.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/kaiju 2024-06-22T14:00:43,900 creating build/bdist.linux-armv7l/wheel/multiqc/modules/sexdeterrmine 2024-06-22T14:00:43,901 copying build/lib/multiqc/modules/sexdeterrmine/sexdeterrmine.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/sexdeterrmine 2024-06-22T14:00:43,903 copying build/lib/multiqc/modules/sexdeterrmine/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/sexdeterrmine 2024-06-22T14:00:43,906 creating build/bdist.linux-armv7l/wheel/multiqc/modules/hostile 2024-06-22T14:00:43,906 copying build/lib/multiqc/modules/hostile/hostile.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/hostile 2024-06-22T14:00:43,908 copying build/lib/multiqc/modules/hostile/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/hostile 2024-06-22T14:00:43,911 creating build/bdist.linux-armv7l/wheel/multiqc/modules/bamdst 2024-06-22T14:00:43,911 copying build/lib/multiqc/modules/bamdst/bamdst.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/bamdst 2024-06-22T14:00:43,914 copying build/lib/multiqc/modules/bamdst/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/bamdst 2024-06-22T14:00:43,917 creating build/bdist.linux-armv7l/wheel/multiqc/modules/sambamba 2024-06-22T14:00:43,918 copying build/lib/multiqc/modules/sambamba/sambamba.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/sambamba 2024-06-22T14:00:43,920 copying build/lib/multiqc/modules/sambamba/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/sambamba 2024-06-22T14:00:43,921 copying build/lib/multiqc/modules/sambamba/markdup.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/sambamba 2024-06-22T14:00:43,924 creating build/bdist.linux-armv7l/wheel/multiqc/modules/pycoqc 2024-06-22T14:00:43,925 copying build/lib/multiqc/modules/pycoqc/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/pycoqc 2024-06-22T14:00:43,927 copying build/lib/multiqc/modules/pycoqc/pycoqc.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/pycoqc 2024-06-22T14:00:43,930 creating build/bdist.linux-armv7l/wheel/multiqc/modules/gatk 2024-06-22T14:00:43,931 copying build/lib/multiqc/modules/gatk/analyze_saturation_mutagenesis.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/gatk 2024-06-22T14:00:43,933 copying build/lib/multiqc/modules/gatk/base_recalibrator.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/gatk 2024-06-22T14:00:43,936 copying build/lib/multiqc/modules/gatk/gatk.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/gatk 2024-06-22T14:00:43,938 copying build/lib/multiqc/modules/gatk/varianteval.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/gatk 2024-06-22T14:00:43,940 copying build/lib/multiqc/modules/gatk/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/gatk 2024-06-22T14:00:43,942 creating build/bdist.linux-armv7l/wheel/multiqc/modules/rseqc 2024-06-22T14:00:43,943 creating build/bdist.linux-armv7l/wheel/multiqc/modules/rseqc/assets 2024-06-22T14:00:43,945 creating build/bdist.linux-armv7l/wheel/multiqc/modules/rseqc/assets/js 2024-06-22T14:00:43,946 copying build/lib/multiqc/modules/rseqc/assets/js/multiqc_rseqc.js -> build/bdist.linux-armv7l/wheel/multiqc/modules/rseqc/assets/js 2024-06-22T14:00:43,947 copying build/lib/multiqc/modules/rseqc/bam_stat.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/rseqc 2024-06-22T14:00:43,949 copying build/lib/multiqc/modules/rseqc/tin.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/rseqc 2024-06-22T14:00:43,951 copying build/lib/multiqc/modules/rseqc/read_gc.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/rseqc 2024-06-22T14:00:43,953 copying build/lib/multiqc/modules/rseqc/junction_saturation.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/rseqc 2024-06-22T14:00:43,955 copying build/lib/multiqc/modules/rseqc/inner_distance.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/rseqc 2024-06-22T14:00:43,957 copying build/lib/multiqc/modules/rseqc/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/rseqc 2024-06-22T14:00:43,959 copying build/lib/multiqc/modules/rseqc/read_distribution.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/rseqc 2024-06-22T14:00:43,961 copying build/lib/multiqc/modules/rseqc/read_duplication.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/rseqc 2024-06-22T14:00:43,963 copying build/lib/multiqc/modules/rseqc/rseqc.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/rseqc 2024-06-22T14:00:43,965 copying build/lib/multiqc/modules/rseqc/infer_experiment.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/rseqc 2024-06-22T14:00:43,967 copying build/lib/multiqc/modules/rseqc/gene_body_coverage.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/rseqc 2024-06-22T14:00:43,969 copying build/lib/multiqc/modules/rseqc/junction_annotation.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/rseqc 2024-06-22T14:00:43,972 creating build/bdist.linux-armv7l/wheel/multiqc/modules/megahit 2024-06-22T14:00:43,973 copying build/lib/multiqc/modules/megahit/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/megahit 2024-06-22T14:00:43,975 copying build/lib/multiqc/modules/megahit/megahit.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/megahit 2024-06-22T14:00:43,977 creating build/bdist.linux-armv7l/wheel/multiqc/modules/fgbio 2024-06-22T14:00:43,978 copying build/lib/multiqc/modules/fgbio/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/fgbio 2024-06-22T14:00:43,980 copying build/lib/multiqc/modules/fgbio/groupreadsbyumi.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/fgbio 2024-06-22T14:00:43,982 copying build/lib/multiqc/modules/fgbio/ErrorRateByReadPosition.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/fgbio 2024-06-22T14:00:43,984 copying build/lib/multiqc/modules/fgbio/fgbio.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/fgbio 2024-06-22T14:00:43,987 creating build/bdist.linux-armv7l/wheel/multiqc/modules/fastq_screen 2024-06-22T14:00:43,988 copying build/lib/multiqc/modules/fastq_screen/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/fastq_screen 2024-06-22T14:00:43,990 copying build/lib/multiqc/modules/fastq_screen/fastq_screen.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/fastq_screen 2024-06-22T14:00:43,992 creating build/bdist.linux-armv7l/wheel/multiqc/modules/bclconvert 2024-06-22T14:00:43,993 copying build/lib/multiqc/modules/bclconvert/bclconvert.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/bclconvert 2024-06-22T14:00:43,996 copying build/lib/multiqc/modules/bclconvert/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/bclconvert 2024-06-22T14:00:43,998 creating build/bdist.linux-armv7l/wheel/multiqc/modules/nonpareil 2024-06-22T14:00:43,999 copying build/lib/multiqc/modules/nonpareil/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/nonpareil 2024-06-22T14:00:44,001 copying build/lib/multiqc/modules/nonpareil/nonpareil.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/nonpareil 2024-06-22T14:00:44,004 creating build/bdist.linux-armv7l/wheel/multiqc/modules/macs2 2024-06-22T14:00:44,004 copying build/lib/multiqc/modules/macs2/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/macs2 2024-06-22T14:00:44,006 copying build/lib/multiqc/modules/macs2/macs2.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/macs2 2024-06-22T14:00:44,009 creating build/bdist.linux-armv7l/wheel/multiqc/modules/flash 2024-06-22T14:00:44,010 copying build/lib/multiqc/modules/flash/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/flash 2024-06-22T14:00:44,011 copying build/lib/multiqc/modules/flash/flash.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/flash 2024-06-22T14:00:44,014 creating build/bdist.linux-armv7l/wheel/multiqc/modules/picard 2024-06-22T14:00:44,015 copying build/lib/multiqc/modules/picard/BaseDistributionByCycleMetrics.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/picard 2024-06-22T14:00:44,017 copying build/lib/multiqc/modules/picard/IlluminaBasecallingMetrics.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/picard 2024-06-22T14:00:44,020 copying build/lib/multiqc/modules/picard/ValidateSamFile.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/picard 2024-06-22T14:00:44,022 copying build/lib/multiqc/modules/picard/picard.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/picard 2024-06-22T14:00:44,025 copying build/lib/multiqc/modules/picard/RrbsSummaryMetrics.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/picard 2024-06-22T14:00:44,027 copying build/lib/multiqc/modules/picard/util.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/picard 2024-06-22T14:00:44,030 copying build/lib/multiqc/modules/picard/InsertSizeMetrics.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/picard 2024-06-22T14:00:44,032 copying build/lib/multiqc/modules/picard/CrosscheckFingerprints.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/picard 2024-06-22T14:00:44,035 copying build/lib/multiqc/modules/picard/ExtractIlluminaBarcodes.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/picard 2024-06-22T14:00:44,039 creating build/bdist.linux-armv7l/wheel/multiqc/modules/picard/tests 2024-06-22T14:00:44,040 copying build/lib/multiqc/modules/picard/tests/test_picard.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/picard/tests 2024-06-22T14:00:44,044 copying build/lib/multiqc/modules/picard/tests/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/picard/tests 2024-06-22T14:00:44,046 copying build/lib/multiqc/modules/picard/MarkDuplicates.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/picard 2024-06-22T14:00:44,049 copying build/lib/multiqc/modules/picard/IlluminaLaneMetrics.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/picard 2024-06-22T14:00:44,052 copying build/lib/multiqc/modules/picard/QualityByCycleMetrics.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/picard 2024-06-22T14:00:44,054 copying build/lib/multiqc/modules/picard/MarkIlluminaAdapters.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/picard 2024-06-22T14:00:44,056 copying build/lib/multiqc/modules/picard/TargetedPcrMetrics.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/picard 2024-06-22T14:00:44,059 copying build/lib/multiqc/modules/picard/QualityYieldMetrics.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/picard 2024-06-22T14:00:44,061 copying build/lib/multiqc/modules/picard/HsMetrics.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/picard 2024-06-22T14:00:44,064 copying build/lib/multiqc/modules/picard/OxoGMetrics.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/picard 2024-06-22T14:00:44,067 copying build/lib/multiqc/modules/picard/WgsMetrics.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/picard 2024-06-22T14:00:44,069 copying build/lib/multiqc/modules/picard/RnaSeqMetrics.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/picard 2024-06-22T14:00:44,072 copying build/lib/multiqc/modules/picard/VariantCallingMetrics.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/picard 2024-06-22T14:00:44,074 copying build/lib/multiqc/modules/picard/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/picard 2024-06-22T14:00:44,076 copying build/lib/multiqc/modules/picard/QualityScoreDistributionMetrics.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/picard 2024-06-22T14:00:44,078 copying build/lib/multiqc/modules/picard/GcBiasMetrics.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/picard 2024-06-22T14:00:44,081 copying build/lib/multiqc/modules/picard/AlignmentSummaryMetrics.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/picard 2024-06-22T14:00:44,084 creating build/bdist.linux-armv7l/wheel/multiqc/modules/prokka 2024-06-22T14:00:44,085 copying build/lib/multiqc/modules/prokka/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/prokka 2024-06-22T14:00:44,087 copying build/lib/multiqc/modules/prokka/prokka.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/prokka 2024-06-22T14:00:44,091 creating build/bdist.linux-armv7l/wheel/multiqc/modules/somalier 2024-06-22T14:00:44,092 copying build/lib/multiqc/modules/somalier/somalier.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/somalier 2024-06-22T14:00:44,096 copying build/lib/multiqc/modules/somalier/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/somalier 2024-06-22T14:00:44,099 creating build/bdist.linux-armv7l/wheel/multiqc/modules/happy 2024-06-22T14:00:44,100 copying build/lib/multiqc/modules/happy/happy.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/happy 2024-06-22T14:00:44,103 copying build/lib/multiqc/modules/happy/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/happy 2024-06-22T14:00:44,105 creating build/bdist.linux-armv7l/wheel/multiqc/modules/sequali 2024-06-22T14:00:44,106 copying build/lib/multiqc/modules/sequali/sequali.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/sequali 2024-06-22T14:00:44,110 copying build/lib/multiqc/modules/sequali/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/sequali 2024-06-22T14:00:44,113 creating build/bdist.linux-armv7l/wheel/multiqc/modules/cellranger 2024-06-22T14:00:44,114 copying build/lib/multiqc/modules/cellranger/count.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/cellranger 2024-06-22T14:00:44,118 copying build/lib/multiqc/modules/cellranger/vdj.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/cellranger 2024-06-22T14:00:44,121 copying build/lib/multiqc/modules/cellranger/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/cellranger 2024-06-22T14:00:44,123 copying build/lib/multiqc/modules/cellranger/utils.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/cellranger 2024-06-22T14:00:44,125 copying build/lib/multiqc/modules/cellranger/cellranger.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/cellranger 2024-06-22T14:00:44,127 creating build/bdist.linux-armv7l/wheel/multiqc/modules/isoseq 2024-06-22T14:00:44,128 copying build/lib/multiqc/modules/isoseq/isoseq.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/isoseq 2024-06-22T14:00:44,131 copying build/lib/multiqc/modules/isoseq/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/isoseq 2024-06-22T14:00:44,133 creating build/bdist.linux-armv7l/wheel/multiqc/modules/mapdamage 2024-06-22T14:00:44,134 copying build/lib/multiqc/modules/mapdamage/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/mapdamage 2024-06-22T14:00:44,136 copying build/lib/multiqc/modules/mapdamage/mapdamage.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/mapdamage 2024-06-22T14:00:44,139 creating build/bdist.linux-armv7l/wheel/multiqc/modules/lima 2024-06-22T14:00:44,139 copying build/lib/multiqc/modules/lima/lima.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/lima 2024-06-22T14:00:44,142 copying build/lib/multiqc/modules/lima/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/lima 2024-06-22T14:00:44,144 creating build/bdist.linux-armv7l/wheel/multiqc/modules/purple 2024-06-22T14:00:44,145 copying build/lib/multiqc/modules/purple/purple.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/purple 2024-06-22T14:00:44,147 copying build/lib/multiqc/modules/purple/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/purple 2024-06-22T14:00:44,149 creating build/bdist.linux-armv7l/wheel/multiqc/modules/seqyclean 2024-06-22T14:00:44,150 copying build/lib/multiqc/modules/seqyclean/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/seqyclean 2024-06-22T14:00:44,152 copying build/lib/multiqc/modules/seqyclean/seqyclean.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/seqyclean 2024-06-22T14:00:44,154 creating build/bdist.linux-armv7l/wheel/multiqc/modules/vep 2024-06-22T14:00:44,155 copying build/lib/multiqc/modules/vep/vep.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/vep 2024-06-22T14:00:44,158 copying build/lib/multiqc/modules/vep/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/vep 2024-06-22T14:00:44,160 creating build/bdist.linux-armv7l/wheel/multiqc/modules/spaceranger 2024-06-22T14:00:44,161 copying build/lib/multiqc/modules/spaceranger/count.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/spaceranger 2024-06-22T14:00:44,163 copying build/lib/multiqc/modules/spaceranger/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/spaceranger 2024-06-22T14:00:44,165 copying build/lib/multiqc/modules/spaceranger/spaceranger.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/spaceranger 2024-06-22T14:00:44,167 copying build/lib/multiqc/modules/spaceranger/_utils.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/spaceranger 2024-06-22T14:00:44,169 creating build/bdist.linux-armv7l/wheel/multiqc/modules/varscan2 2024-06-22T14:00:44,169 copying build/lib/multiqc/modules/varscan2/varscan2.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/varscan2 2024-06-22T14:00:44,172 copying build/lib/multiqc/modules/varscan2/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/varscan2 2024-06-22T14:00:44,174 creating build/bdist.linux-armv7l/wheel/multiqc/modules/conpair 2024-06-22T14:00:44,175 copying build/lib/multiqc/modules/conpair/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/conpair 2024-06-22T14:00:44,177 copying build/lib/multiqc/modules/conpair/conpair.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/conpair 2024-06-22T14:00:44,180 creating build/bdist.linux-armv7l/wheel/multiqc/modules/diamond 2024-06-22T14:00:44,181 copying build/lib/multiqc/modules/diamond/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/diamond 2024-06-22T14:00:44,183 copying build/lib/multiqc/modules/diamond/diamond.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/diamond 2024-06-22T14:00:44,185 creating build/bdist.linux-armv7l/wheel/multiqc/modules/clipandmerge 2024-06-22T14:00:44,186 copying build/lib/multiqc/modules/clipandmerge/clipandmerge.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/clipandmerge 2024-06-22T14:00:44,189 copying build/lib/multiqc/modules/clipandmerge/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/clipandmerge 2024-06-22T14:00:44,191 creating build/bdist.linux-armv7l/wheel/multiqc/modules/bbduk 2024-06-22T14:00:44,193 copying build/lib/multiqc/modules/bbduk/bbduk.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/bbduk 2024-06-22T14:00:44,195 copying build/lib/multiqc/modules/bbduk/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/bbduk 2024-06-22T14:00:44,197 creating build/bdist.linux-armv7l/wheel/multiqc/modules/bamtools 2024-06-22T14:00:44,198 copying build/lib/multiqc/modules/bamtools/stats.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/bamtools 2024-06-22T14:00:44,200 copying build/lib/multiqc/modules/bamtools/bamtools.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/bamtools 2024-06-22T14:00:44,202 copying build/lib/multiqc/modules/bamtools/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/bamtools 2024-06-22T14:00:44,204 creating build/bdist.linux-armv7l/wheel/multiqc/modules/xenome 2024-06-22T14:00:44,205 copying build/lib/multiqc/modules/xenome/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/xenome 2024-06-22T14:00:44,207 copying build/lib/multiqc/modules/xenome/xenome.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/xenome 2024-06-22T14:00:44,210 creating build/bdist.linux-armv7l/wheel/multiqc/modules/rna_seqc 2024-06-22T14:00:44,210 copying build/lib/multiqc/modules/rna_seqc/rna_seqc.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/rna_seqc 2024-06-22T14:00:44,213 copying build/lib/multiqc/modules/rna_seqc/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/rna_seqc 2024-06-22T14:00:44,215 creating build/bdist.linux-armv7l/wheel/multiqc/modules/homer 2024-06-22T14:00:44,216 copying build/lib/multiqc/modules/homer/homer.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/homer 2024-06-22T14:00:44,218 copying build/lib/multiqc/modules/homer/findpeaks.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/homer 2024-06-22T14:00:44,219 copying build/lib/multiqc/modules/homer/tagdirectory.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/homer 2024-06-22T14:00:44,221 copying build/lib/multiqc/modules/homer/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/homer 2024-06-22T14:00:44,223 creating build/bdist.linux-armv7l/wheel/multiqc/modules/ivar 2024-06-22T14:00:44,224 copying build/lib/multiqc/modules/ivar/ivar.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/ivar 2024-06-22T14:00:44,227 copying build/lib/multiqc/modules/ivar/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/ivar 2024-06-22T14:00:44,229 creating build/bdist.linux-armv7l/wheel/multiqc/modules/mtnucratio 2024-06-22T14:00:44,230 copying build/lib/multiqc/modules/mtnucratio/mtnucratio.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/mtnucratio 2024-06-22T14:00:44,232 copying build/lib/multiqc/modules/mtnucratio/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/mtnucratio 2024-06-22T14:00:44,234 creating build/bdist.linux-armv7l/wheel/multiqc/modules/qualimap 2024-06-22T14:00:44,236 copying build/lib/multiqc/modules/qualimap/QM_BamQC.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/qualimap 2024-06-22T14:00:44,238 copying build/lib/multiqc/modules/qualimap/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/qualimap 2024-06-22T14:00:44,240 copying build/lib/multiqc/modules/qualimap/qualimap.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/qualimap 2024-06-22T14:00:44,243 copying build/lib/multiqc/modules/qualimap/QM_RNASeq.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/qualimap 2024-06-22T14:00:44,246 creating build/bdist.linux-armv7l/wheel/multiqc/modules/flexbar 2024-06-22T14:00:44,247 copying build/lib/multiqc/modules/flexbar/flexbar.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/flexbar 2024-06-22T14:00:44,250 copying build/lib/multiqc/modules/flexbar/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/flexbar 2024-06-22T14:00:44,252 creating build/bdist.linux-armv7l/wheel/multiqc/modules/bustools 2024-06-22T14:00:44,253 copying build/lib/multiqc/modules/bustools/bustools.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/bustools 2024-06-22T14:00:44,256 copying build/lib/multiqc/modules/bustools/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/bustools 2024-06-22T14:00:44,258 creating build/bdist.linux-armv7l/wheel/multiqc/modules/mirtop 2024-06-22T14:00:44,260 copying build/lib/multiqc/modules/mirtop/mirtop.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/mirtop 2024-06-22T14:00:44,262 copying build/lib/multiqc/modules/mirtop/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/mirtop 2024-06-22T14:00:44,265 creating build/bdist.linux-armv7l/wheel/multiqc/modules/phantompeakqualtools 2024-06-22T14:00:44,266 copying build/lib/multiqc/modules/phantompeakqualtools/phantompeakqualtools.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/phantompeakqualtools 2024-06-22T14:00:44,268 copying build/lib/multiqc/modules/phantompeakqualtools/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/phantompeakqualtools 2024-06-22T14:00:44,270 creating build/bdist.linux-armv7l/wheel/multiqc/modules/theta2 2024-06-22T14:00:44,271 copying build/lib/multiqc/modules/theta2/theta2.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/theta2 2024-06-22T14:00:44,274 copying build/lib/multiqc/modules/theta2/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/theta2 2024-06-22T14:00:44,276 creating build/bdist.linux-armv7l/wheel/multiqc/modules/xengsort 2024-06-22T14:00:44,277 copying build/lib/multiqc/modules/xengsort/xengsort.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/xengsort 2024-06-22T14:00:44,280 copying build/lib/multiqc/modules/xengsort/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/xengsort 2024-06-22T14:00:44,282 creating build/bdist.linux-armv7l/wheel/multiqc/modules/metaphlan 2024-06-22T14:00:44,283 copying build/lib/multiqc/modules/metaphlan/metaphlan.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/metaphlan 2024-06-22T14:00:44,286 copying build/lib/multiqc/modules/metaphlan/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/metaphlan 2024-06-22T14:00:44,288 creating build/bdist.linux-armv7l/wheel/multiqc/modules/humid 2024-06-22T14:00:44,289 copying build/lib/multiqc/modules/humid/stats.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/humid 2024-06-22T14:00:44,292 copying build/lib/multiqc/modules/humid/clusters.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/humid 2024-06-22T14:00:44,294 copying build/lib/multiqc/modules/humid/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/humid 2024-06-22T14:00:44,296 copying build/lib/multiqc/modules/humid/neighbours.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/humid 2024-06-22T14:00:44,298 copying build/lib/multiqc/modules/humid/counts.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/humid 2024-06-22T14:00:44,300 copying build/lib/multiqc/modules/humid/humid.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/humid 2024-06-22T14:00:44,303 creating build/bdist.linux-armv7l/wheel/multiqc/modules/sortmerna 2024-06-22T14:00:44,304 copying build/lib/multiqc/modules/sortmerna/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/sortmerna 2024-06-22T14:00:44,306 copying build/lib/multiqc/modules/sortmerna/sortmerna.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/sortmerna 2024-06-22T14:00:44,309 creating build/bdist.linux-armv7l/wheel/multiqc/modules/pangolin 2024-06-22T14:00:44,310 copying build/lib/multiqc/modules/pangolin/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/pangolin 2024-06-22T14:00:44,312 copying build/lib/multiqc/modules/pangolin/pangolin.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/pangolin 2024-06-22T14:00:44,315 creating build/bdist.linux-armv7l/wheel/multiqc/modules/jellyfish 2024-06-22T14:00:44,317 copying build/lib/multiqc/modules/jellyfish/jellyfish.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/jellyfish 2024-06-22T14:00:44,319 copying build/lib/multiqc/modules/jellyfish/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/jellyfish 2024-06-22T14:00:44,322 creating build/bdist.linux-armv7l/wheel/multiqc/modules/dragen 2024-06-22T14:00:44,323 copying build/lib/multiqc/modules/dragen/coverage_metrics.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/dragen 2024-06-22T14:00:44,327 copying build/lib/multiqc/modules/dragen/time_metrics.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/dragen 2024-06-22T14:00:44,329 creating build/bdist.linux-armv7l/wheel/multiqc/modules/dragen/tests 2024-06-22T14:00:44,330 copying build/lib/multiqc/modules/dragen/tests/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/dragen/tests 2024-06-22T14:00:44,332 copying build/lib/multiqc/modules/dragen/tests/test_dragen.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/dragen/tests 2024-06-22T14:00:44,334 copying build/lib/multiqc/modules/dragen/trimmer_metrics.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/dragen 2024-06-22T14:00:44,336 copying build/lib/multiqc/modules/dragen/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/dragen 2024-06-22T14:00:44,338 copying build/lib/multiqc/modules/dragen/fragment_length.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/dragen 2024-06-22T14:00:44,340 copying build/lib/multiqc/modules/dragen/ploidy_estimation_metrics.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/dragen 2024-06-22T14:00:44,343 copying build/lib/multiqc/modules/dragen/utils.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/dragen 2024-06-22T14:00:44,346 copying build/lib/multiqc/modules/dragen/sc_rna_metrics.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/dragen 2024-06-22T14:00:44,349 copying build/lib/multiqc/modules/dragen/sc_atac_metrics.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/dragen 2024-06-22T14:00:44,351 copying build/lib/multiqc/modules/dragen/dragen.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/dragen 2024-06-22T14:00:44,354 copying build/lib/multiqc/modules/dragen/dragen_gc_metrics.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/dragen 2024-06-22T14:00:44,357 copying build/lib/multiqc/modules/dragen/coverage_per_contig.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/dragen 2024-06-22T14:00:44,360 copying build/lib/multiqc/modules/dragen/rna_quant_metrics.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/dragen 2024-06-22T14:00:44,362 copying build/lib/multiqc/modules/dragen/mapping_metrics.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/dragen 2024-06-22T14:00:44,366 copying build/lib/multiqc/modules/dragen/vc_metrics.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/dragen 2024-06-22T14:00:44,369 copying build/lib/multiqc/modules/dragen/rna_transcript_cov.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/dragen 2024-06-22T14:00:44,371 copying build/lib/multiqc/modules/dragen/overall_mean_cov.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/dragen 2024-06-22T14:00:44,373 copying build/lib/multiqc/modules/dragen/coverage_hist.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/dragen 2024-06-22T14:00:44,377 creating build/bdist.linux-armv7l/wheel/multiqc/modules/quast 2024-06-22T14:00:44,378 copying build/lib/multiqc/modules/quast/quast.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/quast 2024-06-22T14:00:44,381 copying build/lib/multiqc/modules/quast/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/quast 2024-06-22T14:00:44,383 creating build/bdist.linux-armv7l/wheel/multiqc/modules/bowtie1 2024-06-22T14:00:44,384 copying build/lib/multiqc/modules/bowtie1/bowtie1.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/bowtie1 2024-06-22T14:00:44,387 copying build/lib/multiqc/modules/bowtie1/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/bowtie1 2024-06-22T14:00:44,389 creating build/bdist.linux-armv7l/wheel/multiqc/modules/hops 2024-06-22T14:00:44,391 copying build/lib/multiqc/modules/hops/hops.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/hops 2024-06-22T14:00:44,393 copying build/lib/multiqc/modules/hops/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/hops 2024-06-22T14:00:44,396 creating build/bdist.linux-armv7l/wheel/multiqc/modules/tophat 2024-06-22T14:00:44,397 copying build/lib/multiqc/modules/tophat/tophat.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/tophat 2024-06-22T14:00:44,399 copying build/lib/multiqc/modules/tophat/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/tophat 2024-06-22T14:00:44,402 creating build/bdist.linux-armv7l/wheel/multiqc/modules/sargasso 2024-06-22T14:00:44,403 copying build/lib/multiqc/modules/sargasso/sargasso.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/sargasso 2024-06-22T14:00:44,406 copying build/lib/multiqc/modules/sargasso/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/sargasso 2024-06-22T14:00:44,408 creating build/bdist.linux-armv7l/wheel/multiqc/modules/supernova 2024-06-22T14:00:44,409 copying build/lib/multiqc/modules/supernova/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/supernova 2024-06-22T14:00:44,411 copying build/lib/multiqc/modules/supernova/supernova.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/supernova 2024-06-22T14:00:44,415 creating build/bdist.linux-armv7l/wheel/multiqc/modules/cutadapt 2024-06-22T14:00:44,416 copying build/lib/multiqc/modules/cutadapt/cutadapt.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/cutadapt 2024-06-22T14:00:44,419 copying build/lib/multiqc/modules/cutadapt/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/cutadapt 2024-06-22T14:00:44,421 creating build/bdist.linux-armv7l/wheel/multiqc/modules/hicup 2024-06-22T14:00:44,422 copying build/lib/multiqc/modules/hicup/hicup.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/hicup 2024-06-22T14:00:44,425 copying build/lib/multiqc/modules/hicup/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/hicup 2024-06-22T14:00:44,427 creating build/bdist.linux-armv7l/wheel/multiqc/modules/afterqc 2024-06-22T14:00:44,429 copying build/lib/multiqc/modules/afterqc/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/afterqc 2024-06-22T14:00:44,431 copying build/lib/multiqc/modules/afterqc/afterqc.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/afterqc 2024-06-22T14:00:44,434 creating build/bdist.linux-armv7l/wheel/multiqc/modules/biobloomtools 2024-06-22T14:00:44,435 copying build/lib/multiqc/modules/biobloomtools/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/biobloomtools 2024-06-22T14:00:44,436 copying build/lib/multiqc/modules/biobloomtools/biobloomtools.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/biobloomtools 2024-06-22T14:00:44,439 creating build/bdist.linux-armv7l/wheel/multiqc/modules/sourmash 2024-06-22T14:00:44,440 copying build/lib/multiqc/modules/sourmash/sourmash.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/sourmash 2024-06-22T14:00:44,442 copying build/lib/multiqc/modules/sourmash/compare.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/sourmash 2024-06-22T14:00:44,443 copying build/lib/multiqc/modules/sourmash/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/sourmash 2024-06-22T14:00:44,446 copying build/lib/multiqc/modules/sourmash/gather.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/sourmash 2024-06-22T14:00:44,449 creating build/bdist.linux-armv7l/wheel/multiqc/modules/qorts 2024-06-22T14:00:44,450 copying build/lib/multiqc/modules/qorts/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/qorts 2024-06-22T14:00:44,451 copying build/lib/multiqc/modules/qorts/qorts.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/qorts 2024-06-22T14:00:44,454 copying build/lib/multiqc/modules/software_versions.py -> build/bdist.linux-armv7l/wheel/multiqc/modules 2024-06-22T14:00:44,456 creating build/bdist.linux-armv7l/wheel/multiqc/modules/seqwho 2024-06-22T14:00:44,457 copying build/lib/multiqc/modules/seqwho/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/seqwho 2024-06-22T14:00:44,458 copying build/lib/multiqc/modules/seqwho/seqwho.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/seqwho 2024-06-22T14:00:44,461 creating build/bdist.linux-armv7l/wheel/multiqc/modules/verifybamid 2024-06-22T14:00:44,462 copying build/lib/multiqc/modules/verifybamid/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/verifybamid 2024-06-22T14:00:44,464 copying build/lib/multiqc/modules/verifybamid/verifybamid.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/verifybamid 2024-06-22T14:00:44,466 creating build/bdist.linux-armv7l/wheel/multiqc/modules/skewer 2024-06-22T14:00:44,467 copying build/lib/multiqc/modules/skewer/skewer.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/skewer 2024-06-22T14:00:44,469 copying build/lib/multiqc/modules/skewer/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/skewer 2024-06-22T14:00:44,471 creating build/bdist.linux-armv7l/wheel/multiqc/modules/eigenstratdatabasetools 2024-06-22T14:00:44,472 copying build/lib/multiqc/modules/eigenstratdatabasetools/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/eigenstratdatabasetools 2024-06-22T14:00:44,474 copying build/lib/multiqc/modules/eigenstratdatabasetools/eigenstratdatabasetools.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/eigenstratdatabasetools 2024-06-22T14:00:44,475 copying build/lib/multiqc/modules/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules 2024-06-22T14:00:44,477 creating build/bdist.linux-armv7l/wheel/multiqc/modules/anglerfish 2024-06-22T14:00:44,478 copying build/lib/multiqc/modules/anglerfish/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/anglerfish 2024-06-22T14:00:44,480 copying build/lib/multiqc/modules/anglerfish/anglerfish.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/anglerfish 2024-06-22T14:00:44,482 creating build/bdist.linux-armv7l/wheel/multiqc/modules/busco 2024-06-22T14:00:44,483 copying build/lib/multiqc/modules/busco/busco.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/busco 2024-06-22T14:00:44,485 copying build/lib/multiqc/modules/busco/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/busco 2024-06-22T14:00:44,488 creating build/bdist.linux-armv7l/wheel/multiqc/modules/filtlong 2024-06-22T14:00:44,489 copying build/lib/multiqc/modules/filtlong/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/filtlong 2024-06-22T14:00:44,491 copying build/lib/multiqc/modules/filtlong/filtlong.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/filtlong 2024-06-22T14:00:44,493 creating build/bdist.linux-armv7l/wheel/multiqc/modules/ccs 2024-06-22T14:00:44,494 creating build/bdist.linux-armv7l/wheel/multiqc/modules/ccs/tests 2024-06-22T14:00:44,495 copying build/lib/multiqc/modules/ccs/tests/test_ccs.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/ccs/tests 2024-06-22T14:00:44,497 copying build/lib/multiqc/modules/ccs/tests/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/ccs/tests 2024-06-22T14:00:44,499 copying build/lib/multiqc/modules/ccs/ccs.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/ccs 2024-06-22T14:00:44,501 copying build/lib/multiqc/modules/ccs/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/ccs 2024-06-22T14:00:44,503 creating build/bdist.linux-armv7l/wheel/multiqc/modules/clusterflow 2024-06-22T14:00:44,504 copying build/lib/multiqc/modules/clusterflow/clusterflow.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/clusterflow 2024-06-22T14:00:44,507 copying build/lib/multiqc/modules/clusterflow/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/clusterflow 2024-06-22T14:00:44,509 creating build/bdist.linux-armv7l/wheel/multiqc/modules/bcftools 2024-06-22T14:00:44,510 copying build/lib/multiqc/modules/bcftools/stats.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/bcftools 2024-06-22T14:00:44,513 copying build/lib/multiqc/modules/bcftools/bcftools.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/bcftools 2024-06-22T14:00:44,514 copying build/lib/multiqc/modules/bcftools/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/bcftools 2024-06-22T14:00:44,517 creating build/bdist.linux-armv7l/wheel/multiqc/modules/hifiasm 2024-06-22T14:00:44,518 copying build/lib/multiqc/modules/hifiasm/hifiasm.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/hifiasm 2024-06-22T14:00:44,520 copying build/lib/multiqc/modules/hifiasm/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/hifiasm 2024-06-22T14:00:44,522 creating build/bdist.linux-armv7l/wheel/multiqc/modules/porechop 2024-06-22T14:00:44,523 copying build/lib/multiqc/modules/porechop/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/porechop 2024-06-22T14:00:44,525 copying build/lib/multiqc/modules/porechop/porechop.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/porechop 2024-06-22T14:00:44,528 creating build/bdist.linux-armv7l/wheel/multiqc/modules/multivcfanalyzer 2024-06-22T14:00:44,529 copying build/lib/multiqc/modules/multivcfanalyzer/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/multivcfanalyzer 2024-06-22T14:00:44,530 copying build/lib/multiqc/modules/multivcfanalyzer/multivcfanalyzer.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/multivcfanalyzer 2024-06-22T14:00:44,533 creating build/bdist.linux-armv7l/wheel/multiqc/modules/bcl2fastq 2024-06-22T14:00:44,534 copying build/lib/multiqc/modules/bcl2fastq/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/bcl2fastq 2024-06-22T14:00:44,536 copying build/lib/multiqc/modules/bcl2fastq/bcl2fastq.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/bcl2fastq 2024-06-22T14:00:44,539 creating build/bdist.linux-armv7l/wheel/multiqc/modules/nextclade 2024-06-22T14:00:44,540 copying build/lib/multiqc/modules/nextclade/nextclade.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/nextclade 2024-06-22T14:00:44,542 copying build/lib/multiqc/modules/nextclade/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/nextclade 2024-06-22T14:00:44,544 creating build/bdist.linux-armv7l/wheel/multiqc/modules/pychopper 2024-06-22T14:00:44,545 copying build/lib/multiqc/modules/pychopper/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/pychopper 2024-06-22T14:00:44,547 copying build/lib/multiqc/modules/pychopper/pychopper.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/pychopper 2024-06-22T14:00:44,550 creating build/bdist.linux-armv7l/wheel/multiqc/modules/fastp 2024-06-22T14:00:44,550 copying build/lib/multiqc/modules/fastp/fastp.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/fastp 2024-06-22T14:00:44,553 copying build/lib/multiqc/modules/fastp/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/fastp 2024-06-22T14:00:44,555 creating build/bdist.linux-armv7l/wheel/multiqc/modules/truvari 2024-06-22T14:00:44,556 copying build/lib/multiqc/modules/truvari/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/truvari 2024-06-22T14:00:44,558 copying build/lib/multiqc/modules/truvari/bench.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/truvari 2024-06-22T14:00:44,560 copying build/lib/multiqc/modules/truvari/truvari.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/truvari 2024-06-22T14:00:44,562 creating build/bdist.linux-armv7l/wheel/multiqc/modules/dedup 2024-06-22T14:00:44,563 copying build/lib/multiqc/modules/dedup/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/dedup 2024-06-22T14:00:44,565 copying build/lib/multiqc/modules/dedup/dedup.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/dedup 2024-06-22T14:00:44,568 creating build/bdist.linux-armv7l/wheel/multiqc/modules/bracken 2024-06-22T14:00:44,569 copying build/lib/multiqc/modules/bracken/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/bracken 2024-06-22T14:00:44,570 copying build/lib/multiqc/modules/bracken/bracken.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/bracken 2024-06-22T14:00:44,573 creating build/bdist.linux-armv7l/wheel/multiqc/modules/malt 2024-06-22T14:00:44,574 copying build/lib/multiqc/modules/malt/malt.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/malt 2024-06-22T14:00:44,576 copying build/lib/multiqc/modules/malt/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/malt 2024-06-22T14:00:44,578 creating build/bdist.linux-armv7l/wheel/multiqc/modules/trimmomatic 2024-06-22T14:00:44,579 copying build/lib/multiqc/modules/trimmomatic/trimmomatic.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/trimmomatic 2024-06-22T14:00:44,581 copying build/lib/multiqc/modules/trimmomatic/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/trimmomatic 2024-06-22T14:00:44,583 creating build/bdist.linux-armv7l/wheel/multiqc/modules/hicpro 2024-06-22T14:00:44,584 copying build/lib/multiqc/modules/hicpro/hicpro.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/hicpro 2024-06-22T14:00:44,586 copying build/lib/multiqc/modules/hicpro/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/hicpro 2024-06-22T14:00:44,588 creating build/bdist.linux-armv7l/wheel/multiqc/modules/samblaster 2024-06-22T14:00:44,589 copying build/lib/multiqc/modules/samblaster/samblaster.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/samblaster 2024-06-22T14:00:44,591 copying build/lib/multiqc/modules/samblaster/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/samblaster 2024-06-22T14:00:44,593 creating build/bdist.linux-armv7l/wheel/multiqc/modules/star 2024-06-22T14:00:44,594 copying build/lib/multiqc/modules/star/star.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/star 2024-06-22T14:00:44,597 copying build/lib/multiqc/modules/star/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/star 2024-06-22T14:00:44,599 creating build/bdist.linux-armv7l/wheel/multiqc/modules/kat 2024-06-22T14:00:44,599 copying build/lib/multiqc/modules/kat/kat.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/kat 2024-06-22T14:00:44,602 copying build/lib/multiqc/modules/kat/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/kat 2024-06-22T14:00:44,603 creating build/bdist.linux-armv7l/wheel/multiqc/modules/biobambam2 2024-06-22T14:00:44,604 copying build/lib/multiqc/modules/biobambam2/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/biobambam2 2024-06-22T14:00:44,606 copying build/lib/multiqc/modules/biobambam2/biobambam2.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/biobambam2 2024-06-22T14:00:44,608 creating build/bdist.linux-armv7l/wheel/multiqc/modules/htseq 2024-06-22T14:00:44,609 copying build/lib/multiqc/modules/htseq/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/htseq 2024-06-22T14:00:44,611 copying build/lib/multiqc/modules/htseq/htseq.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/htseq 2024-06-22T14:00:44,614 creating build/bdist.linux-armv7l/wheel/multiqc/modules/methylqa 2024-06-22T14:00:44,615 copying build/lib/multiqc/modules/methylqa/methylqa.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/methylqa 2024-06-22T14:00:44,617 copying build/lib/multiqc/modules/methylqa/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/methylqa 2024-06-22T14:00:44,619 creating build/bdist.linux-armv7l/wheel/multiqc/modules/bakta 2024-06-22T14:00:44,620 copying build/lib/multiqc/modules/bakta/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/bakta 2024-06-22T14:00:44,621 copying build/lib/multiqc/modules/bakta/bakta.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/bakta 2024-06-22T14:00:44,624 creating build/bdist.linux-armv7l/wheel/multiqc/modules/kraken 2024-06-22T14:00:44,625 copying build/lib/multiqc/modules/kraken/kraken.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/kraken 2024-06-22T14:00:44,627 copying build/lib/multiqc/modules/kraken/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/kraken 2024-06-22T14:00:44,630 creating build/bdist.linux-armv7l/wheel/multiqc/modules/longranger 2024-06-22T14:00:44,630 copying build/lib/multiqc/modules/longranger/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/longranger 2024-06-22T14:00:44,632 copying build/lib/multiqc/modules/longranger/longranger.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/longranger 2024-06-22T14:00:44,635 creating build/bdist.linux-armv7l/wheel/multiqc/modules/gffcompare 2024-06-22T14:00:44,636 copying build/lib/multiqc/modules/gffcompare/gffcompare.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/gffcompare 2024-06-22T14:00:44,639 copying build/lib/multiqc/modules/gffcompare/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/gffcompare 2024-06-22T14:00:44,641 creating build/bdist.linux-armv7l/wheel/multiqc/modules/seqera_cli 2024-06-22T14:00:44,642 copying build/lib/multiqc/modules/seqera_cli/seqera_cli.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/seqera_cli 2024-06-22T14:00:44,644 copying build/lib/multiqc/modules/seqera_cli/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/seqera_cli 2024-06-22T14:00:44,646 creating build/bdist.linux-armv7l/wheel/multiqc/modules/salmon 2024-06-22T14:00:44,647 copying build/lib/multiqc/modules/salmon/salmon.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/salmon 2024-06-22T14:00:44,649 copying build/lib/multiqc/modules/salmon/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/salmon 2024-06-22T14:00:44,651 creating build/bdist.linux-armv7l/wheel/multiqc/modules/minionqc 2024-06-22T14:00:44,652 copying build/lib/multiqc/modules/minionqc/minionqc.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/minionqc 2024-06-22T14:00:44,654 copying build/lib/multiqc/modules/minionqc/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/minionqc 2024-06-22T14:00:44,656 creating build/bdist.linux-armv7l/wheel/multiqc/modules/featureCounts 2024-06-22T14:00:44,657 copying build/lib/multiqc/modules/featureCounts/feature_counts.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/featureCounts 2024-06-22T14:00:44,659 copying build/lib/multiqc/modules/featureCounts/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/featureCounts 2024-06-22T14:00:44,662 creating build/bdist.linux-armv7l/wheel/multiqc/modules/leehom 2024-06-22T14:00:44,662 copying build/lib/multiqc/modules/leehom/leehom.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/leehom 2024-06-22T14:00:44,664 copying build/lib/multiqc/modules/leehom/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/leehom 2024-06-22T14:00:44,666 creating build/bdist.linux-armv7l/wheel/multiqc/modules/whatshap 2024-06-22T14:00:44,667 copying build/lib/multiqc/modules/whatshap/whatshap.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/whatshap 2024-06-22T14:00:44,669 copying build/lib/multiqc/modules/whatshap/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/whatshap 2024-06-22T14:00:44,671 creating build/bdist.linux-armv7l/wheel/multiqc/modules/snippy 2024-06-22T14:00:44,672 copying build/lib/multiqc/modules/snippy/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/snippy 2024-06-22T14:00:44,674 copying build/lib/multiqc/modules/snippy/snippy.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/snippy 2024-06-22T14:00:44,677 creating build/bdist.linux-armv7l/wheel/multiqc/modules/odgi 2024-06-22T14:00:44,678 copying build/lib/multiqc/modules/odgi/odgi.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/odgi 2024-06-22T14:00:44,680 copying build/lib/multiqc/modules/odgi/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/odgi 2024-06-22T14:00:44,683 creating build/bdist.linux-armv7l/wheel/multiqc/modules/goleft_indexcov 2024-06-22T14:00:44,683 copying build/lib/multiqc/modules/goleft_indexcov/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/goleft_indexcov 2024-06-22T14:00:44,685 copying build/lib/multiqc/modules/goleft_indexcov/goleft_indexcov.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/goleft_indexcov 2024-06-22T14:00:44,688 creating build/bdist.linux-armv7l/wheel/multiqc/modules/kallisto 2024-06-22T14:00:44,689 copying build/lib/multiqc/modules/kallisto/kallisto.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/kallisto 2024-06-22T14:00:44,691 copying build/lib/multiqc/modules/kallisto/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/kallisto 2024-06-22T14:00:44,694 creating build/bdist.linux-armv7l/wheel/multiqc/modules/samtools 2024-06-22T14:00:44,695 copying build/lib/multiqc/modules/samtools/stats.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/samtools 2024-06-22T14:00:44,697 copying build/lib/multiqc/modules/samtools/flagstat.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/samtools 2024-06-22T14:00:44,700 creating build/bdist.linux-armv7l/wheel/multiqc/modules/samtools/tests 2024-06-22T14:00:44,701 copying build/lib/multiqc/modules/samtools/tests/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/samtools/tests 2024-06-22T14:00:44,702 copying build/lib/multiqc/modules/samtools/tests/test_flagstat.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/samtools/tests 2024-06-22T14:00:44,704 copying build/lib/multiqc/modules/samtools/idxstats.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/samtools 2024-06-22T14:00:44,706 copying build/lib/multiqc/modules/samtools/coverage.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/samtools 2024-06-22T14:00:44,708 copying build/lib/multiqc/modules/samtools/samtools.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/samtools 2024-06-22T14:00:44,710 copying build/lib/multiqc/modules/samtools/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/samtools 2024-06-22T14:00:44,711 copying build/lib/multiqc/modules/samtools/markdup.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/samtools 2024-06-22T14:00:44,713 copying build/lib/multiqc/modules/samtools/rmdup.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/samtools 2024-06-22T14:00:44,716 creating build/bdist.linux-armv7l/wheel/multiqc/modules/disambiguate 2024-06-22T14:00:44,717 copying build/lib/multiqc/modules/disambiguate/disambiguate.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/disambiguate 2024-06-22T14:00:44,719 copying build/lib/multiqc/modules/disambiguate/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/disambiguate 2024-06-22T14:00:44,721 creating build/bdist.linux-armv7l/wheel/multiqc/modules/qc3C 2024-06-22T14:00:44,722 copying build/lib/multiqc/modules/qc3C/qc3C.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/qc3C 2024-06-22T14:00:44,725 copying build/lib/multiqc/modules/qc3C/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/qc3C 2024-06-22T14:00:44,727 creating build/bdist.linux-armv7l/wheel/multiqc/modules/custom_content 2024-06-22T14:00:44,728 copying build/lib/multiqc/modules/custom_content/custom_content.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/custom_content 2024-06-22T14:00:44,731 copying build/lib/multiqc/modules/custom_content/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/custom_content 2024-06-22T14:00:44,733 creating build/bdist.linux-armv7l/wheel/multiqc/modules/interop 2024-06-22T14:00:44,734 copying build/lib/multiqc/modules/interop/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/interop 2024-06-22T14:00:44,736 copying build/lib/multiqc/modules/interop/interop.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/interop 2024-06-22T14:00:44,739 creating build/bdist.linux-armv7l/wheel/multiqc/modules/stacks 2024-06-22T14:00:44,740 copying build/lib/multiqc/modules/stacks/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/stacks 2024-06-22T14:00:44,741 copying build/lib/multiqc/modules/stacks/stacks.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/stacks 2024-06-22T14:00:44,744 creating build/bdist.linux-armv7l/wheel/multiqc/modules/ngsderive 2024-06-22T14:00:44,745 copying build/lib/multiqc/modules/ngsderive/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/ngsderive 2024-06-22T14:00:44,747 copying build/lib/multiqc/modules/ngsderive/ngsderive.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/ngsderive 2024-06-22T14:00:44,750 creating build/bdist.linux-armv7l/wheel/multiqc/modules/damageprofiler 2024-06-22T14:00:44,751 copying build/lib/multiqc/modules/damageprofiler/damageprofiler.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/damageprofiler 2024-06-22T14:00:44,753 copying build/lib/multiqc/modules/damageprofiler/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/damageprofiler 2024-06-22T14:00:44,755 creating build/bdist.linux-armv7l/wheel/multiqc/modules/fastqc 2024-06-22T14:00:44,756 creating build/bdist.linux-armv7l/wheel/multiqc/modules/fastqc/assets 2024-06-22T14:00:44,757 creating build/bdist.linux-armv7l/wheel/multiqc/modules/fastqc/assets/css 2024-06-22T14:00:44,758 copying build/lib/multiqc/modules/fastqc/assets/css/multiqc_fastqc.css -> build/bdist.linux-armv7l/wheel/multiqc/modules/fastqc/assets/css 2024-06-22T14:00:44,761 creating build/bdist.linux-armv7l/wheel/multiqc/modules/fastqc/assets/js 2024-06-22T14:00:44,762 copying build/lib/multiqc/modules/fastqc/assets/js/multiqc_fastqc.js -> build/bdist.linux-armv7l/wheel/multiqc/modules/fastqc/assets/js 2024-06-22T14:00:44,764 copying build/lib/multiqc/modules/fastqc/fastqc.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/fastqc 2024-06-22T14:00:44,768 creating build/bdist.linux-armv7l/wheel/multiqc/modules/fastqc/fastqc_theoretical_gc 2024-06-22T14:00:44,769 copying build/lib/multiqc/modules/fastqc/fastqc_theoretical_gc/fastqc_theoretical_gc_mm10_txome.txt -> build/bdist.linux-armv7l/wheel/multiqc/modules/fastqc/fastqc_theoretical_gc 2024-06-22T14:00:44,771 copying build/lib/multiqc/modules/fastqc/fastqc_theoretical_gc/fastqc_theoretical_gc_mm10_genome.txt -> build/bdist.linux-armv7l/wheel/multiqc/modules/fastqc/fastqc_theoretical_gc 2024-06-22T14:00:44,773 copying build/lib/multiqc/modules/fastqc/fastqc_theoretical_gc/fastqc_theoretical_gc_hg38_txome.txt -> build/bdist.linux-armv7l/wheel/multiqc/modules/fastqc/fastqc_theoretical_gc 2024-06-22T14:00:44,774 copying build/lib/multiqc/modules/fastqc/fastqc_theoretical_gc/fastqc_theoretical_gc_hg38_genome.txt -> build/bdist.linux-armv7l/wheel/multiqc/modules/fastqc/fastqc_theoretical_gc 2024-06-22T14:00:44,776 copying build/lib/multiqc/modules/fastqc/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/fastqc 2024-06-22T14:00:44,778 creating build/bdist.linux-armv7l/wheel/multiqc/modules/deeptools 2024-06-22T14:00:44,779 copying build/lib/multiqc/modules/deeptools/plotProfile.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/deeptools 2024-06-22T14:00:44,781 copying build/lib/multiqc/modules/deeptools/estimateReadFiltering.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/deeptools 2024-06-22T14:00:44,783 copying build/lib/multiqc/modules/deeptools/plotPCA.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/deeptools 2024-06-22T14:00:44,785 copying build/lib/multiqc/modules/deeptools/plotFingerprint.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/deeptools 2024-06-22T14:00:44,787 copying build/lib/multiqc/modules/deeptools/plotEnrichment.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/deeptools 2024-06-22T14:00:44,789 copying build/lib/multiqc/modules/deeptools/deeptools.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/deeptools 2024-06-22T14:00:44,791 copying build/lib/multiqc/modules/deeptools/plotCorrelation.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/deeptools 2024-06-22T14:00:44,793 copying build/lib/multiqc/modules/deeptools/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/deeptools 2024-06-22T14:00:44,795 copying build/lib/multiqc/modules/deeptools/plotCoverage.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/deeptools 2024-06-22T14:00:44,797 copying build/lib/multiqc/modules/deeptools/bamPEFragmentSizeTable.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/deeptools 2024-06-22T14:00:44,799 copying build/lib/multiqc/modules/deeptools/bamPEFragmentSizeDistribution.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/deeptools 2024-06-22T14:00:44,802 creating build/bdist.linux-armv7l/wheel/multiqc/modules/bismark 2024-06-22T14:00:44,803 copying build/lib/multiqc/modules/bismark/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/bismark 2024-06-22T14:00:44,805 copying build/lib/multiqc/modules/bismark/bismark.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/bismark 2024-06-22T14:00:44,807 copying build/lib/multiqc/modules/profile_runtime.py -> build/bdist.linux-armv7l/wheel/multiqc/modules 2024-06-22T14:00:44,810 creating build/bdist.linux-armv7l/wheel/multiqc/modules/rsem 2024-06-22T14:00:44,811 copying build/lib/multiqc/modules/rsem/rsem.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/rsem 2024-06-22T14:00:44,813 copying build/lib/multiqc/modules/rsem/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/rsem 2024-06-22T14:00:44,815 creating build/bdist.linux-armv7l/wheel/multiqc/modules/bowtie2 2024-06-22T14:00:44,816 copying build/lib/multiqc/modules/bowtie2/bowtie2.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/bowtie2 2024-06-22T14:00:44,818 copying build/lib/multiqc/modules/bowtie2/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/bowtie2 2024-06-22T14:00:44,820 creating build/bdist.linux-armv7l/wheel/multiqc/modules/vcftools 2024-06-22T14:00:44,821 copying build/lib/multiqc/modules/vcftools/tstv_by_qual.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/vcftools 2024-06-22T14:00:44,823 copying build/lib/multiqc/modules/vcftools/vcftools.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/vcftools 2024-06-22T14:00:44,825 copying build/lib/multiqc/modules/vcftools/relatedness2.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/vcftools 2024-06-22T14:00:44,827 copying build/lib/multiqc/modules/vcftools/tstv_by_count.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/vcftools 2024-06-22T14:00:44,828 copying build/lib/multiqc/modules/vcftools/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/vcftools 2024-06-22T14:00:44,830 copying build/lib/multiqc/modules/vcftools/tstv_summary.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/vcftools 2024-06-22T14:00:44,832 creating build/bdist.linux-armv7l/wheel/multiqc/modules/gopeaks 2024-06-22T14:00:44,833 copying build/lib/multiqc/modules/gopeaks/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/gopeaks 2024-06-22T14:00:44,835 copying build/lib/multiqc/modules/gopeaks/gopeaks.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/gopeaks 2024-06-22T14:00:44,837 creating build/bdist.linux-armv7l/wheel/multiqc/modules/mosdepth 2024-06-22T14:00:44,838 copying build/lib/multiqc/modules/mosdepth/mosdepth.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/mosdepth 2024-06-22T14:00:44,841 copying build/lib/multiqc/modules/mosdepth/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/mosdepth 2024-06-22T14:00:44,844 creating build/bdist.linux-armv7l/wheel/multiqc/modules/bbmap 2024-06-22T14:00:44,844 copying build/lib/multiqc/modules/bbmap/plot_mhist.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/bbmap 2024-06-22T14:00:44,846 copying build/lib/multiqc/modules/bbmap/plot_idhist.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/bbmap 2024-06-22T14:00:44,848 copying build/lib/multiqc/modules/bbmap/plot_covhist.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/bbmap 2024-06-22T14:00:44,850 copying build/lib/multiqc/modules/bbmap/plot_basic_hist.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/bbmap 2024-06-22T14:00:44,852 copying build/lib/multiqc/modules/bbmap/plot_qahist.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/bbmap 2024-06-22T14:00:44,854 copying build/lib/multiqc/modules/bbmap/bbmap_filetypes.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/bbmap 2024-06-22T14:00:44,856 copying build/lib/multiqc/modules/bbmap/plot_aqhist.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/bbmap 2024-06-22T14:00:44,858 copying build/lib/multiqc/modules/bbmap/plot_bqhist.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/bbmap 2024-06-22T14:00:44,860 copying build/lib/multiqc/modules/bbmap/plot_qchist.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/bbmap 2024-06-22T14:00:44,862 copying build/lib/multiqc/modules/bbmap/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/bbmap 2024-06-22T14:00:44,864 copying build/lib/multiqc/modules/bbmap/plot_ihist.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/bbmap 2024-06-22T14:00:44,866 copying build/lib/multiqc/modules/bbmap/plot_qhist.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/bbmap 2024-06-22T14:00:44,867 copying build/lib/multiqc/modules/bbmap/plot_indelhist.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/bbmap 2024-06-22T14:00:44,869 copying build/lib/multiqc/modules/bbmap/bbmap.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/bbmap 2024-06-22T14:00:44,871 copying build/lib/multiqc/modules/bbmap/plot_bhist.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/bbmap 2024-06-22T14:00:44,874 creating build/bdist.linux-armv7l/wheel/multiqc/modules/librarian 2024-06-22T14:00:44,874 copying build/lib/multiqc/modules/librarian/librarian.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/librarian 2024-06-22T14:00:44,877 copying build/lib/multiqc/modules/librarian/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/librarian 2024-06-22T14:00:44,879 creating build/bdist.linux-armv7l/wheel/multiqc/modules/jcvi 2024-06-22T14:00:44,880 copying build/lib/multiqc/modules/jcvi/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/jcvi 2024-06-22T14:00:44,882 copying build/lib/multiqc/modules/jcvi/jcvi.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/jcvi 2024-06-22T14:00:44,884 creating build/bdist.linux-armv7l/wheel/multiqc/modules/motus 2024-06-22T14:00:44,885 copying build/lib/multiqc/modules/motus/motus.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/motus 2024-06-22T14:00:44,887 copying build/lib/multiqc/modules/motus/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/motus 2024-06-22T14:00:44,890 creating build/bdist.linux-armv7l/wheel/multiqc/modules/checkqc 2024-06-22T14:00:44,891 copying build/lib/multiqc/modules/checkqc/checkqc.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/checkqc 2024-06-22T14:00:44,893 copying build/lib/multiqc/modules/checkqc/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/checkqc 2024-06-22T14:00:44,895 creating build/bdist.linux-armv7l/wheel/multiqc/modules/mirtrace 2024-06-22T14:00:44,896 copying build/lib/multiqc/modules/mirtrace/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/mirtrace 2024-06-22T14:00:44,898 copying build/lib/multiqc/modules/mirtrace/mirtrace.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/mirtrace 2024-06-22T14:00:44,901 creating build/bdist.linux-armv7l/wheel/multiqc/modules/prinseqplusplus 2024-06-22T14:00:44,902 copying build/lib/multiqc/modules/prinseqplusplus/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/prinseqplusplus 2024-06-22T14:00:44,904 copying build/lib/multiqc/modules/prinseqplusplus/prinseqplusplus.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/prinseqplusplus 2024-06-22T14:00:44,906 running install_egg_info 2024-06-22T14:00:44,909 Copying multiqc.egg-info to build/bdist.linux-armv7l/wheel/multiqc-1.22.3-py3.11.egg-info 2024-06-22T14:00:44,923 running install_scripts 2024-06-22T14:00:44,949 creating build/bdist.linux-armv7l/wheel/multiqc-1.22.3.dist-info/WHEEL 2024-06-22T14:00:44,952 creating '/tmp/pip-wheel-te01fkx4/.tmp-00fbce6b/multiqc-1.22.3-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2024-06-22T14:00:44,955 adding 'multiqc/__init__.py' 2024-06-22T14:00:44,956 adding 'multiqc/__main__.py' 2024-06-22T14:00:44,960 adding 'multiqc/base_module.py' 2024-06-22T14:00:44,963 adding 'multiqc/config.py' 2024-06-22T14:00:44,966 adding 'multiqc/config_defaults.yaml' 2024-06-22T14:00:44,969 adding 'multiqc/interactive.py' 2024-06-22T14:00:44,971 adding 'multiqc/multiqc.py' 2024-06-22T14:00:44,976 adding 'multiqc/report.py' 2024-06-22T14:00:44,980 adding 'multiqc/search_patterns.yaml' 2024-06-22T14:00:44,982 adding 'multiqc/validation.py' 2024-06-22T14:00:44,984 adding 'multiqc/core/__init__.py' 2024-06-22T14:00:44,985 adding 'multiqc/core/exceptions.py' 2024-06-22T14:00:44,987 adding 'multiqc/core/exec_modules.py' 2024-06-22T14:00:44,988 adding 'multiqc/core/file_search.py' 2024-06-22T14:00:44,990 adding 'multiqc/core/init_log.py' 2024-06-22T14:00:44,992 adding 'multiqc/core/plugin_hooks.py' 2024-06-22T14:00:44,994 adding 'multiqc/core/software_versions.py' 2024-06-22T14:00:44,995 adding 'multiqc/core/strict_helpers.py' 2024-06-22T14:00:44,997 adding 'multiqc/core/update_config.py' 2024-06-22T14:00:44,999 adding 'multiqc/core/version_check.py' 2024-06-22T14:00:45,002 adding 'multiqc/core/write_results.py' 2024-06-22T14:00:45,006 adding 'multiqc/modules/__init__.py' 2024-06-22T14:00:45,008 adding 'multiqc/modules/profile_runtime.py' 2024-06-22T14:00:45,009 adding 'multiqc/modules/software_versions.py' 2024-06-22T14:00:45,011 adding 'multiqc/modules/adapterremoval/__init__.py' 2024-06-22T14:00:45,013 adding 'multiqc/modules/adapterremoval/adapterremoval.py' 2024-06-22T14:00:45,014 adding 'multiqc/modules/afterqc/__init__.py' 2024-06-22T14:00:45,016 adding 'multiqc/modules/afterqc/afterqc.py' 2024-06-22T14:00:45,018 adding 'multiqc/modules/anglerfish/__init__.py' 2024-06-22T14:00:45,019 adding 'multiqc/modules/anglerfish/anglerfish.py' 2024-06-22T14:00:45,022 adding 'multiqc/modules/bakta/__init__.py' 2024-06-22T14:00:45,023 adding 'multiqc/modules/bakta/bakta.py' 2024-06-22T14:00:45,025 adding 'multiqc/modules/bamdst/__init__.py' 2024-06-22T14:00:45,027 adding 'multiqc/modules/bamdst/bamdst.py' 2024-06-22T14:00:45,029 adding 'multiqc/modules/bamtools/__init__.py' 2024-06-22T14:00:45,030 adding 'multiqc/modules/bamtools/bamtools.py' 2024-06-22T14:00:45,031 adding 'multiqc/modules/bamtools/stats.py' 2024-06-22T14:00:45,033 adding 'multiqc/modules/bbduk/__init__.py' 2024-06-22T14:00:45,035 adding 'multiqc/modules/bbduk/bbduk.py' 2024-06-22T14:00:45,037 adding 'multiqc/modules/bbmap/__init__.py' 2024-06-22T14:00:45,039 adding 'multiqc/modules/bbmap/bbmap.py' 2024-06-22T14:00:45,041 adding 'multiqc/modules/bbmap/bbmap_filetypes.py' 2024-06-22T14:00:45,043 adding 'multiqc/modules/bbmap/plot_aqhist.py' 2024-06-22T14:00:45,044 adding 'multiqc/modules/bbmap/plot_basic_hist.py' 2024-06-22T14:00:45,046 adding 'multiqc/modules/bbmap/plot_bhist.py' 2024-06-22T14:00:45,047 adding 'multiqc/modules/bbmap/plot_bqhist.py' 2024-06-22T14:00:45,048 adding 'multiqc/modules/bbmap/plot_covhist.py' 2024-06-22T14:00:45,049 adding 'multiqc/modules/bbmap/plot_idhist.py' 2024-06-22T14:00:45,051 adding 'multiqc/modules/bbmap/plot_ihist.py' 2024-06-22T14:00:45,052 adding 'multiqc/modules/bbmap/plot_indelhist.py' 2024-06-22T14:00:45,053 adding 'multiqc/modules/bbmap/plot_mhist.py' 2024-06-22T14:00:45,055 adding 'multiqc/modules/bbmap/plot_qahist.py' 2024-06-22T14:00:45,056 adding 'multiqc/modules/bbmap/plot_qchist.py' 2024-06-22T14:00:45,057 adding 'multiqc/modules/bbmap/plot_qhist.py' 2024-06-22T14:00:45,059 adding 'multiqc/modules/bcftools/__init__.py' 2024-06-22T14:00:45,060 adding 'multiqc/modules/bcftools/bcftools.py' 2024-06-22T14:00:45,062 adding 'multiqc/modules/bcftools/stats.py' 2024-06-22T14:00:45,064 adding 'multiqc/modules/bcl2fastq/__init__.py' 2024-06-22T14:00:45,067 adding 'multiqc/modules/bcl2fastq/bcl2fastq.py' 2024-06-22T14:00:45,069 adding 'multiqc/modules/bclconvert/__init__.py' 2024-06-22T14:00:45,073 adding 'multiqc/modules/bclconvert/bclconvert.py' 2024-06-22T14:00:45,075 adding 'multiqc/modules/biobambam2/__init__.py' 2024-06-22T14:00:45,077 adding 'multiqc/modules/biobambam2/biobambam2.py' 2024-06-22T14:00:45,079 adding 'multiqc/modules/biobloomtools/__init__.py' 2024-06-22T14:00:45,080 adding 'multiqc/modules/biobloomtools/biobloomtools.py' 2024-06-22T14:00:45,082 adding 'multiqc/modules/biscuit/__init__.py' 2024-06-22T14:00:45,087 adding 'multiqc/modules/biscuit/biscuit.py' 2024-06-22T14:00:45,089 adding 'multiqc/modules/bismark/__init__.py' 2024-06-22T14:00:45,092 adding 'multiqc/modules/bismark/bismark.py' 2024-06-22T14:00:45,094 adding 'multiqc/modules/bowtie1/__init__.py' 2024-06-22T14:00:45,095 adding 'multiqc/modules/bowtie1/bowtie1.py' 2024-06-22T14:00:45,097 adding 'multiqc/modules/bowtie2/__init__.py' 2024-06-22T14:00:45,099 adding 'multiqc/modules/bowtie2/bowtie2.py' 2024-06-22T14:00:45,100 adding 'multiqc/modules/bracken/__init__.py' 2024-06-22T14:00:45,101 adding 'multiqc/modules/bracken/bracken.py' 2024-06-22T14:00:45,103 adding 'multiqc/modules/busco/__init__.py' 2024-06-22T14:00:45,104 adding 'multiqc/modules/busco/busco.py' 2024-06-22T14:00:45,106 adding 'multiqc/modules/bustools/__init__.py' 2024-06-22T14:00:45,107 adding 'multiqc/modules/bustools/bustools.py' 2024-06-22T14:00:45,109 adding 'multiqc/modules/ccs/__init__.py' 2024-06-22T14:00:45,111 adding 'multiqc/modules/ccs/ccs.py' 2024-06-22T14:00:45,113 adding 'multiqc/modules/ccs/tests/__init__.py' 2024-06-22T14:00:45,114 adding 'multiqc/modules/ccs/tests/test_ccs.py' 2024-06-22T14:00:45,116 adding 'multiqc/modules/cellranger/__init__.py' 2024-06-22T14:00:45,117 adding 'multiqc/modules/cellranger/cellranger.py' 2024-06-22T14:00:45,119 adding 'multiqc/modules/cellranger/count.py' 2024-06-22T14:00:45,121 adding 'multiqc/modules/cellranger/utils.py' 2024-06-22T14:00:45,123 adding 'multiqc/modules/cellranger/vdj.py' 2024-06-22T14:00:45,125 adding 'multiqc/modules/checkqc/__init__.py' 2024-06-22T14:00:45,127 adding 'multiqc/modules/checkqc/checkqc.py' 2024-06-22T14:00:45,129 adding 'multiqc/modules/clipandmerge/__init__.py' 2024-06-22T14:00:45,130 adding 'multiqc/modules/clipandmerge/clipandmerge.py' 2024-06-22T14:00:45,132 adding 'multiqc/modules/clusterflow/__init__.py' 2024-06-22T14:00:45,134 adding 'multiqc/modules/clusterflow/clusterflow.py' 2024-06-22T14:00:45,136 adding 'multiqc/modules/conpair/__init__.py' 2024-06-22T14:00:45,137 adding 'multiqc/modules/conpair/conpair.py' 2024-06-22T14:00:45,139 adding 'multiqc/modules/custom_content/__init__.py' 2024-06-22T14:00:45,142 adding 'multiqc/modules/custom_content/custom_content.py' 2024-06-22T14:00:45,144 adding 'multiqc/modules/cutadapt/__init__.py' 2024-06-22T14:00:45,147 adding 'multiqc/modules/cutadapt/cutadapt.py' 2024-06-22T14:00:45,149 adding 'multiqc/modules/damageprofiler/__init__.py' 2024-06-22T14:00:45,150 adding 'multiqc/modules/damageprofiler/damageprofiler.py' 2024-06-22T14:00:45,152 adding 'multiqc/modules/dedup/__init__.py' 2024-06-22T14:00:45,154 adding 'multiqc/modules/dedup/dedup.py' 2024-06-22T14:00:45,155 adding 'multiqc/modules/deeptools/__init__.py' 2024-06-22T14:00:45,157 adding 'multiqc/modules/deeptools/bamPEFragmentSizeDistribution.py' 2024-06-22T14:00:45,159 adding 'multiqc/modules/deeptools/bamPEFragmentSizeTable.py' 2024-06-22T14:00:45,160 adding 'multiqc/modules/deeptools/deeptools.py' 2024-06-22T14:00:45,162 adding 'multiqc/modules/deeptools/estimateReadFiltering.py' 2024-06-22T14:00:45,163 adding 'multiqc/modules/deeptools/plotCorrelation.py' 2024-06-22T14:00:45,165 adding 'multiqc/modules/deeptools/plotCoverage.py' 2024-06-22T14:00:45,166 adding 'multiqc/modules/deeptools/plotEnrichment.py' 2024-06-22T14:00:45,168 adding 'multiqc/modules/deeptools/plotFingerprint.py' 2024-06-22T14:00:45,170 adding 'multiqc/modules/deeptools/plotPCA.py' 2024-06-22T14:00:45,171 adding 'multiqc/modules/deeptools/plotProfile.py' 2024-06-22T14:00:45,173 adding 'multiqc/modules/diamond/__init__.py' 2024-06-22T14:00:45,174 adding 'multiqc/modules/diamond/diamond.py' 2024-06-22T14:00:45,176 adding 'multiqc/modules/disambiguate/__init__.py' 2024-06-22T14:00:45,177 adding 'multiqc/modules/disambiguate/disambiguate.py' 2024-06-22T14:00:45,179 adding 'multiqc/modules/dragen/__init__.py' 2024-06-22T14:00:45,181 adding 'multiqc/modules/dragen/coverage_hist.py' 2024-06-22T14:00:45,189 adding 'multiqc/modules/dragen/coverage_metrics.py' 2024-06-22T14:00:45,191 adding 'multiqc/modules/dragen/coverage_per_contig.py' 2024-06-22T14:00:45,193 adding 'multiqc/modules/dragen/dragen.py' 2024-06-22T14:00:45,194 adding 'multiqc/modules/dragen/dragen_gc_metrics.py' 2024-06-22T14:00:45,196 adding 'multiqc/modules/dragen/fragment_length.py' 2024-06-22T14:00:45,199 adding 'multiqc/modules/dragen/mapping_metrics.py' 2024-06-22T14:00:45,202 adding 'multiqc/modules/dragen/overall_mean_cov.py' 2024-06-22T14:00:45,203 adding 'multiqc/modules/dragen/ploidy_estimation_metrics.py' 2024-06-22T14:00:45,204 adding 'multiqc/modules/dragen/rna_quant_metrics.py' 2024-06-22T14:00:45,206 adding 'multiqc/modules/dragen/rna_transcript_cov.py' 2024-06-22T14:00:45,207 adding 'multiqc/modules/dragen/sc_atac_metrics.py' 2024-06-22T14:00:45,208 adding 'multiqc/modules/dragen/sc_rna_metrics.py' 2024-06-22T14:00:45,210 adding 'multiqc/modules/dragen/time_metrics.py' 2024-06-22T14:00:45,211 adding 'multiqc/modules/dragen/trimmer_metrics.py' 2024-06-22T14:00:45,213 adding 'multiqc/modules/dragen/utils.py' 2024-06-22T14:00:45,215 adding 'multiqc/modules/dragen/vc_metrics.py' 2024-06-22T14:00:45,217 adding 'multiqc/modules/dragen/tests/__init__.py' 2024-06-22T14:00:45,218 adding 'multiqc/modules/dragen/tests/test_dragen.py' 2024-06-22T14:00:45,220 adding 'multiqc/modules/dragen_fastqc/__init__.py' 2024-06-22T14:00:45,222 adding 'multiqc/modules/dragen_fastqc/base_metrics.py' 2024-06-22T14:00:45,224 adding 'multiqc/modules/dragen_fastqc/content_metrics.py' 2024-06-22T14:00:45,225 adding 'multiqc/modules/dragen_fastqc/dragen_fastqc.py' 2024-06-22T14:00:45,227 adding 'multiqc/modules/dragen_fastqc/gc_metrics.py' 2024-06-22T14:00:45,228 adding 'multiqc/modules/dragen_fastqc/read_metrics.py' 2024-06-22T14:00:45,230 adding 'multiqc/modules/dragen_fastqc/util.py' 2024-06-22T14:00:45,234 adding 'multiqc/modules/dragen_fastqc/assets/js/multiqc_dragen_fastqc.js' 2024-06-22T14:00:45,235 adding 'multiqc/modules/eigenstratdatabasetools/__init__.py' 2024-06-22T14:00:45,237 adding 'multiqc/modules/eigenstratdatabasetools/eigenstratdatabasetools.py' 2024-06-22T14:00:45,238 adding 'multiqc/modules/fastp/__init__.py' 2024-06-22T14:00:45,241 adding 'multiqc/modules/fastp/fastp.py' 2024-06-22T14:00:45,243 adding 'multiqc/modules/fastq_screen/__init__.py' 2024-06-22T14:00:45,244 adding 'multiqc/modules/fastq_screen/fastq_screen.py' 2024-06-22T14:00:45,246 adding 'multiqc/modules/fastqc/__init__.py' 2024-06-22T14:00:45,252 adding 'multiqc/modules/fastqc/fastqc.py' 2024-06-22T14:00:45,255 adding 'multiqc/modules/fastqc/assets/css/multiqc_fastqc.css' 2024-06-22T14:00:45,258 adding 'multiqc/modules/fastqc/assets/js/multiqc_fastqc.js' 2024-06-22T14:00:45,260 adding 'multiqc/modules/fastqc/fastqc_theoretical_gc/fastqc_theoretical_gc_hg38_genome.txt' 2024-06-22T14:00:45,261 adding 'multiqc/modules/fastqc/fastqc_theoretical_gc/fastqc_theoretical_gc_hg38_txome.txt' 2024-06-22T14:00:45,263 adding 'multiqc/modules/fastqc/fastqc_theoretical_gc/fastqc_theoretical_gc_mm10_genome.txt' 2024-06-22T14:00:45,264 adding 'multiqc/modules/fastqc/fastqc_theoretical_gc/fastqc_theoretical_gc_mm10_txome.txt' 2024-06-22T14:00:45,265 adding 'multiqc/modules/featureCounts/__init__.py' 2024-06-22T14:00:45,267 adding 'multiqc/modules/featureCounts/feature_counts.py' 2024-06-22T14:00:45,269 adding 'multiqc/modules/fgbio/ErrorRateByReadPosition.py' 2024-06-22T14:00:45,270 adding 'multiqc/modules/fgbio/__init__.py' 2024-06-22T14:00:45,271 adding 'multiqc/modules/fgbio/fgbio.py' 2024-06-22T14:00:45,273 adding 'multiqc/modules/fgbio/groupreadsbyumi.py' 2024-06-22T14:00:45,275 adding 'multiqc/modules/filtlong/__init__.py' 2024-06-22T14:00:45,276 adding 'multiqc/modules/filtlong/filtlong.py' 2024-06-22T14:00:45,278 adding 'multiqc/modules/flash/__init__.py' 2024-06-22T14:00:45,279 adding 'multiqc/modules/flash/flash.py' 2024-06-22T14:00:45,281 adding 'multiqc/modules/flexbar/__init__.py' 2024-06-22T14:00:45,283 adding 'multiqc/modules/flexbar/flexbar.py' 2024-06-22T14:00:45,284 adding 'multiqc/modules/freyja/__init__.py' 2024-06-22T14:00:45,286 adding 'multiqc/modules/freyja/freyja.py' 2024-06-22T14:00:45,287 adding 'multiqc/modules/gatk/__init__.py' 2024-06-22T14:00:45,290 adding 'multiqc/modules/gatk/analyze_saturation_mutagenesis.py' 2024-06-22T14:00:45,292 adding 'multiqc/modules/gatk/base_recalibrator.py' 2024-06-22T14:00:45,293 adding 'multiqc/modules/gatk/gatk.py' 2024-06-22T14:00:45,295 adding 'multiqc/modules/gatk/varianteval.py' 2024-06-22T14:00:45,296 adding 'multiqc/modules/gffcompare/__init__.py' 2024-06-22T14:00:45,299 adding 'multiqc/modules/gffcompare/gffcompare.py' 2024-06-22T14:00:45,300 adding 'multiqc/modules/goleft_indexcov/__init__.py' 2024-06-22T14:00:45,302 adding 'multiqc/modules/goleft_indexcov/goleft_indexcov.py' 2024-06-22T14:00:45,303 adding 'multiqc/modules/gopeaks/__init__.py' 2024-06-22T14:00:45,305 adding 'multiqc/modules/gopeaks/gopeaks.py' 2024-06-22T14:00:45,306 adding 'multiqc/modules/happy/__init__.py' 2024-06-22T14:00:45,308 adding 'multiqc/modules/happy/happy.py' 2024-06-22T14:00:45,310 adding 'multiqc/modules/hicexplorer/__init__.py' 2024-06-22T14:00:45,312 adding 'multiqc/modules/hicexplorer/hicexplorer.py' 2024-06-22T14:00:45,314 adding 'multiqc/modules/hicpro/__init__.py' 2024-06-22T14:00:45,316 adding 'multiqc/modules/hicpro/hicpro.py' 2024-06-22T14:00:45,318 adding 'multiqc/modules/hicup/__init__.py' 2024-06-22T14:00:45,319 adding 'multiqc/modules/hicup/hicup.py' 2024-06-22T14:00:45,321 adding 'multiqc/modules/hifiasm/__init__.py' 2024-06-22T14:00:45,322 adding 'multiqc/modules/hifiasm/hifiasm.py' 2024-06-22T14:00:45,324 adding 'multiqc/modules/hisat2/__init__.py' 2024-06-22T14:00:45,325 adding 'multiqc/modules/hisat2/hisat2.py' 2024-06-22T14:00:45,327 adding 'multiqc/modules/homer/__init__.py' 2024-06-22T14:00:45,328 adding 'multiqc/modules/homer/findpeaks.py' 2024-06-22T14:00:45,330 adding 'multiqc/modules/homer/homer.py' 2024-06-22T14:00:45,332 adding 'multiqc/modules/homer/tagdirectory.py' 2024-06-22T14:00:45,334 adding 'multiqc/modules/hops/__init__.py' 2024-06-22T14:00:45,335 adding 'multiqc/modules/hops/hops.py' 2024-06-22T14:00:45,337 adding 'multiqc/modules/hostile/__init__.py' 2024-06-22T14:00:45,338 adding 'multiqc/modules/hostile/hostile.py' 2024-06-22T14:00:45,340 adding 'multiqc/modules/htseq/__init__.py' 2024-06-22T14:00:45,342 adding 'multiqc/modules/htseq/htseq.py' 2024-06-22T14:00:45,343 adding 'multiqc/modules/humid/__init__.py' 2024-06-22T14:00:45,345 adding 'multiqc/modules/humid/clusters.py' 2024-06-22T14:00:45,346 adding 'multiqc/modules/humid/counts.py' 2024-06-22T14:00:45,347 adding 'multiqc/modules/humid/humid.py' 2024-06-22T14:00:45,348 adding 'multiqc/modules/humid/neighbours.py' 2024-06-22T14:00:45,350 adding 'multiqc/modules/humid/stats.py' 2024-06-22T14:00:45,352 adding 'multiqc/modules/interop/__init__.py' 2024-06-22T14:00:45,354 adding 'multiqc/modules/interop/interop.py' 2024-06-22T14:00:45,355 adding 'multiqc/modules/isoseq/__init__.py' 2024-06-22T14:00:45,357 adding 'multiqc/modules/isoseq/isoseq.py' 2024-06-22T14:00:45,359 adding 'multiqc/modules/ivar/__init__.py' 2024-06-22T14:00:45,361 adding 'multiqc/modules/ivar/ivar.py' 2024-06-22T14:00:45,362 adding 'multiqc/modules/jcvi/__init__.py' 2024-06-22T14:00:45,365 adding 'multiqc/modules/jcvi/jcvi.py' 2024-06-22T14:00:45,366 adding 'multiqc/modules/jellyfish/__init__.py' 2024-06-22T14:00:45,368 adding 'multiqc/modules/jellyfish/jellyfish.py' 2024-06-22T14:00:45,369 adding 'multiqc/modules/kaiju/__init__.py' 2024-06-22T14:00:45,371 adding 'multiqc/modules/kaiju/kaiju.py' 2024-06-22T14:00:45,373 adding 'multiqc/modules/kallisto/__init__.py' 2024-06-22T14:00:45,375 adding 'multiqc/modules/kallisto/kallisto.py' 2024-06-22T14:00:45,376 adding 'multiqc/modules/kat/__init__.py' 2024-06-22T14:00:45,378 adding 'multiqc/modules/kat/kat.py' 2024-06-22T14:00:45,380 adding 'multiqc/modules/kraken/__init__.py' 2024-06-22T14:00:45,382 adding 'multiqc/modules/kraken/kraken.py' 2024-06-22T14:00:45,384 adding 'multiqc/modules/leehom/__init__.py' 2024-06-22T14:00:45,385 adding 'multiqc/modules/leehom/leehom.py' 2024-06-22T14:00:45,387 adding 'multiqc/modules/librarian/__init__.py' 2024-06-22T14:00:45,389 adding 'multiqc/modules/librarian/librarian.py' 2024-06-22T14:00:45,390 adding 'multiqc/modules/lima/__init__.py' 2024-06-22T14:00:45,392 adding 'multiqc/modules/lima/lima.py' 2024-06-22T14:00:45,394 adding 'multiqc/modules/longranger/__init__.py' 2024-06-22T14:00:45,397 adding 'multiqc/modules/longranger/longranger.py' 2024-06-22T14:00:45,398 adding 'multiqc/modules/macs2/__init__.py' 2024-06-22T14:00:45,400 adding 'multiqc/modules/macs2/macs2.py' 2024-06-22T14:00:45,401 adding 'multiqc/modules/malt/__init__.py' 2024-06-22T14:00:45,403 adding 'multiqc/modules/malt/malt.py' 2024-06-22T14:00:45,405 adding 'multiqc/modules/mapdamage/__init__.py' 2024-06-22T14:00:45,407 adding 'multiqc/modules/mapdamage/mapdamage.py' 2024-06-22T14:00:45,408 adding 'multiqc/modules/megahit/__init__.py' 2024-06-22T14:00:45,410 adding 'multiqc/modules/megahit/megahit.py' 2024-06-22T14:00:45,411 adding 'multiqc/modules/metaphlan/__init__.py' 2024-06-22T14:00:45,414 adding 'multiqc/modules/metaphlan/metaphlan.py' 2024-06-22T14:00:45,415 adding 'multiqc/modules/methylqa/__init__.py' 2024-06-22T14:00:45,417 adding 'multiqc/modules/methylqa/methylqa.py' 2024-06-22T14:00:45,418 adding 'multiqc/modules/minionqc/__init__.py' 2024-06-22T14:00:45,420 adding 'multiqc/modules/minionqc/minionqc.py' 2024-06-22T14:00:45,422 adding 'multiqc/modules/mirtop/__init__.py' 2024-06-22T14:00:45,423 adding 'multiqc/modules/mirtop/mirtop.py' 2024-06-22T14:00:45,425 adding 'multiqc/modules/mirtrace/__init__.py' 2024-06-22T14:00:45,427 adding 'multiqc/modules/mirtrace/mirtrace.py' 2024-06-22T14:00:45,428 adding 'multiqc/modules/mosdepth/__init__.py' 2024-06-22T14:00:45,431 adding 'multiqc/modules/mosdepth/mosdepth.py' 2024-06-22T14:00:45,433 adding 'multiqc/modules/motus/__init__.py' 2024-06-22T14:00:45,434 adding 'multiqc/modules/motus/motus.py' 2024-06-22T14:00:45,436 adding 'multiqc/modules/mtnucratio/__init__.py' 2024-06-22T14:00:45,438 adding 'multiqc/modules/mtnucratio/mtnucratio.py' 2024-06-22T14:00:45,439 adding 'multiqc/modules/multivcfanalyzer/__init__.py' 2024-06-22T14:00:45,441 adding 'multiqc/modules/multivcfanalyzer/multivcfanalyzer.py' 2024-06-22T14:00:45,443 adding 'multiqc/modules/nanostat/__init__.py' 2024-06-22T14:00:45,445 adding 'multiqc/modules/nanostat/nanostat.py' 2024-06-22T14:00:45,447 adding 'multiqc/modules/nextclade/__init__.py' 2024-06-22T14:00:45,448 adding 'multiqc/modules/nextclade/nextclade.py' 2024-06-22T14:00:45,450 adding 'multiqc/modules/ngsderive/__init__.py' 2024-06-22T14:00:45,452 adding 'multiqc/modules/ngsderive/ngsderive.py' 2024-06-22T14:00:45,454 adding 'multiqc/modules/nonpareil/__init__.py' 2024-06-22T14:00:45,456 adding 'multiqc/modules/nonpareil/nonpareil.py' 2024-06-22T14:00:45,458 adding 'multiqc/modules/odgi/__init__.py' 2024-06-22T14:00:45,460 adding 'multiqc/modules/odgi/odgi.py' 2024-06-22T14:00:45,462 adding 'multiqc/modules/optitype/__init__.py' 2024-06-22T14:00:45,463 adding 'multiqc/modules/optitype/optitype.py' 2024-06-22T14:00:45,465 adding 'multiqc/modules/pangolin/__init__.py' 2024-06-22T14:00:45,467 adding 'multiqc/modules/pangolin/pangolin.py' 2024-06-22T14:00:45,468 adding 'multiqc/modules/pbmarkdup/__init__.py' 2024-06-22T14:00:45,470 adding 'multiqc/modules/pbmarkdup/pbmarkdup.py' 2024-06-22T14:00:45,472 adding 'multiqc/modules/peddy/__init__.py' 2024-06-22T14:00:45,474 adding 'multiqc/modules/peddy/peddy.py' 2024-06-22T14:00:45,475 adding 'multiqc/modules/phantompeakqualtools/__init__.py' 2024-06-22T14:00:45,477 adding 'multiqc/modules/phantompeakqualtools/phantompeakqualtools.py' 2024-06-22T14:00:45,479 adding 'multiqc/modules/picard/AlignmentSummaryMetrics.py' 2024-06-22T14:00:45,481 adding 'multiqc/modules/picard/BaseDistributionByCycleMetrics.py' 2024-06-22T14:00:45,483 adding 'multiqc/modules/picard/CrosscheckFingerprints.py' 2024-06-22T14:00:45,484 adding 'multiqc/modules/picard/ExtractIlluminaBarcodes.py' 2024-06-22T14:00:45,486 adding 'multiqc/modules/picard/GcBiasMetrics.py' 2024-06-22T14:00:45,489 adding 'multiqc/modules/picard/HsMetrics.py' 2024-06-22T14:00:45,490 adding 'multiqc/modules/picard/IlluminaBasecallingMetrics.py' 2024-06-22T14:00:45,492 adding 'multiqc/modules/picard/IlluminaLaneMetrics.py' 2024-06-22T14:00:45,493 adding 'multiqc/modules/picard/InsertSizeMetrics.py' 2024-06-22T14:00:45,495 adding 'multiqc/modules/picard/MarkDuplicates.py' 2024-06-22T14:00:45,496 adding 'multiqc/modules/picard/MarkIlluminaAdapters.py' 2024-06-22T14:00:45,498 adding 'multiqc/modules/picard/OxoGMetrics.py' 2024-06-22T14:00:45,499 adding 'multiqc/modules/picard/QualityByCycleMetrics.py' 2024-06-22T14:00:45,500 adding 'multiqc/modules/picard/QualityScoreDistributionMetrics.py' 2024-06-22T14:00:45,501 adding 'multiqc/modules/picard/QualityYieldMetrics.py' 2024-06-22T14:00:45,503 adding 'multiqc/modules/picard/RnaSeqMetrics.py' 2024-06-22T14:00:45,505 adding 'multiqc/modules/picard/RrbsSummaryMetrics.py' 2024-06-22T14:00:45,506 adding 'multiqc/modules/picard/TargetedPcrMetrics.py' 2024-06-22T14:00:45,508 adding 'multiqc/modules/picard/ValidateSamFile.py' 2024-06-22T14:00:45,510 adding 'multiqc/modules/picard/VariantCallingMetrics.py' 2024-06-22T14:00:45,512 adding 'multiqc/modules/picard/WgsMetrics.py' 2024-06-22T14:00:45,513 adding 'multiqc/modules/picard/__init__.py' 2024-06-22T14:00:45,514 adding 'multiqc/modules/picard/picard.py' 2024-06-22T14:00:45,516 adding 'multiqc/modules/picard/util.py' 2024-06-22T14:00:45,518 adding 'multiqc/modules/picard/tests/__init__.py' 2024-06-22T14:00:45,519 adding 'multiqc/modules/picard/tests/test_picard.py' 2024-06-22T14:00:45,521 adding 'multiqc/modules/porechop/__init__.py' 2024-06-22T14:00:45,522 adding 'multiqc/modules/porechop/porechop.py' 2024-06-22T14:00:45,524 adding 'multiqc/modules/preseq/__init__.py' 2024-06-22T14:00:45,526 adding 'multiqc/modules/preseq/preseq.py' 2024-06-22T14:00:45,528 adding 'multiqc/modules/prinseqplusplus/__init__.py' 2024-06-22T14:00:45,530 adding 'multiqc/modules/prinseqplusplus/prinseqplusplus.py' 2024-06-22T14:00:45,532 adding 'multiqc/modules/prokka/__init__.py' 2024-06-22T14:00:45,533 adding 'multiqc/modules/prokka/prokka.py' 2024-06-22T14:00:45,535 adding 'multiqc/modules/purple/__init__.py' 2024-06-22T14:00:45,537 adding 'multiqc/modules/purple/purple.py' 2024-06-22T14:00:45,538 adding 'multiqc/modules/pychopper/__init__.py' 2024-06-22T14:00:45,540 adding 'multiqc/modules/pychopper/pychopper.py' 2024-06-22T14:00:45,541 adding 'multiqc/modules/pycoqc/__init__.py' 2024-06-22T14:00:45,543 adding 'multiqc/modules/pycoqc/pycoqc.py' 2024-06-22T14:00:45,545 adding 'multiqc/modules/qc3C/__init__.py' 2024-06-22T14:00:45,550 adding 'multiqc/modules/qc3C/qc3C.py' 2024-06-22T14:00:45,552 adding 'multiqc/modules/qorts/__init__.py' 2024-06-22T14:00:45,554 adding 'multiqc/modules/qorts/qorts.py' 2024-06-22T14:00:45,558 adding 'multiqc/modules/qualimap/QM_BamQC.py' 2024-06-22T14:00:45,560 adding 'multiqc/modules/qualimap/QM_RNASeq.py' 2024-06-22T14:00:45,561 adding 'multiqc/modules/qualimap/__init__.py' 2024-06-22T14:00:45,563 adding 'multiqc/modules/qualimap/qualimap.py' 2024-06-22T14:00:45,564 adding 'multiqc/modules/quast/__init__.py' 2024-06-22T14:00:45,567 adding 'multiqc/modules/quast/quast.py' 2024-06-22T14:00:45,568 adding 'multiqc/modules/rna_seqc/__init__.py' 2024-06-22T14:00:45,570 adding 'multiqc/modules/rna_seqc/rna_seqc.py' 2024-06-22T14:00:45,572 adding 'multiqc/modules/rockhopper/__init__.py' 2024-06-22T14:00:45,574 adding 'multiqc/modules/rockhopper/rockhopper.py' 2024-06-22T14:00:45,576 adding 'multiqc/modules/rsem/__init__.py' 2024-06-22T14:00:45,577 adding 'multiqc/modules/rsem/rsem.py' 2024-06-22T14:00:45,579 adding 'multiqc/modules/rseqc/__init__.py' 2024-06-22T14:00:45,581 adding 'multiqc/modules/rseqc/bam_stat.py' 2024-06-22T14:00:45,582 adding 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2024-06-22T14:00:45,602 adding 'multiqc/modules/sambamba/markdup.py' 2024-06-22T14:00:45,604 adding 'multiqc/modules/sambamba/sambamba.py' 2024-06-22T14:00:45,605 adding 'multiqc/modules/samblaster/__init__.py' 2024-06-22T14:00:45,607 adding 'multiqc/modules/samblaster/samblaster.py' 2024-06-22T14:00:45,608 adding 'multiqc/modules/samtools/__init__.py' 2024-06-22T14:00:45,610 adding 'multiqc/modules/samtools/coverage.py' 2024-06-22T14:00:45,612 adding 'multiqc/modules/samtools/flagstat.py' 2024-06-22T14:00:45,613 adding 'multiqc/modules/samtools/idxstats.py' 2024-06-22T14:00:45,615 adding 'multiqc/modules/samtools/markdup.py' 2024-06-22T14:00:45,616 adding 'multiqc/modules/samtools/rmdup.py' 2024-06-22T14:00:45,618 adding 'multiqc/modules/samtools/samtools.py' 2024-06-22T14:00:45,620 adding 'multiqc/modules/samtools/stats.py' 2024-06-22T14:00:45,621 adding 'multiqc/modules/samtools/tests/__init__.py' 2024-06-22T14:00:45,623 adding 'multiqc/modules/samtools/tests/test_flagstat.py' 2024-06-22T14:00:45,624 adding 'multiqc/modules/sargasso/__init__.py' 2024-06-22T14:00:45,626 adding 'multiqc/modules/sargasso/sargasso.py' 2024-06-22T14:00:45,627 adding 'multiqc/modules/seqera_cli/__init__.py' 2024-06-22T14:00:45,629 adding 'multiqc/modules/seqera_cli/seqera_cli.py' 2024-06-22T14:00:45,631 adding 'multiqc/modules/sequali/__init__.py' 2024-06-22T14:00:45,634 adding 'multiqc/modules/sequali/sequali.py' 2024-06-22T14:00:45,636 adding 'multiqc/modules/seqwho/__init__.py' 2024-06-22T14:00:45,638 adding 'multiqc/modules/seqwho/seqwho.py' 2024-06-22T14:00:45,639 adding 'multiqc/modules/seqyclean/__init__.py' 2024-06-22T14:00:45,641 adding 'multiqc/modules/seqyclean/seqyclean.py' 2024-06-22T14:00:45,643 adding 'multiqc/modules/sexdeterrmine/__init__.py' 2024-06-22T14:00:45,644 adding 'multiqc/modules/sexdeterrmine/sexdeterrmine.py' 2024-06-22T14:00:45,646 adding 'multiqc/modules/sickle/__init__.py' 2024-06-22T14:00:45,647 adding 'multiqc/modules/sickle/sickle.py' 2024-06-22T14:00:45,649 adding 'multiqc/modules/skewer/__init__.py' 2024-06-22T14:00:45,650 adding 'multiqc/modules/skewer/skewer.py' 2024-06-22T14:00:45,652 adding 'multiqc/modules/slamdunk/__init__.py' 2024-06-22T14:00:45,655 adding 'multiqc/modules/slamdunk/slamdunk.py' 2024-06-22T14:00:45,656 adding 'multiqc/modules/snippy/__init__.py' 2024-06-22T14:00:45,658 adding 'multiqc/modules/snippy/snippy.py' 2024-06-22T14:00:45,660 adding 'multiqc/modules/snpeff/__init__.py' 2024-06-22T14:00:45,662 adding 'multiqc/modules/snpeff/snpeff.py' 2024-06-22T14:00:45,663 adding 'multiqc/modules/snpsplit/__init__.py' 2024-06-22T14:00:45,665 adding 'multiqc/modules/snpsplit/snpsplit.py' 2024-06-22T14:00:45,667 adding 'multiqc/modules/somalier/__init__.py' 2024-06-22T14:00:45,670 adding 'multiqc/modules/somalier/somalier.py' 2024-06-22T14:00:45,671 adding 'multiqc/modules/sortmerna/__init__.py' 2024-06-22T14:00:45,673 adding 'multiqc/modules/sortmerna/sortmerna.py' 2024-06-22T14:00:45,675 adding 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'multiqc/modules/theta2/__init__.py' 2024-06-22T14:00:45,698 adding 'multiqc/modules/theta2/theta2.py' 2024-06-22T14:00:45,700 adding 'multiqc/modules/tophat/__init__.py' 2024-06-22T14:00:45,701 adding 'multiqc/modules/tophat/tophat.py' 2024-06-22T14:00:45,703 adding 'multiqc/modules/trimmomatic/__init__.py' 2024-06-22T14:00:45,704 adding 'multiqc/modules/trimmomatic/trimmomatic.py' 2024-06-22T14:00:45,706 adding 'multiqc/modules/truvari/__init__.py' 2024-06-22T14:00:45,707 adding 'multiqc/modules/truvari/bench.py' 2024-06-22T14:00:45,708 adding 'multiqc/modules/truvari/truvari.py' 2024-06-22T14:00:45,710 adding 'multiqc/modules/umitools/__init__.py' 2024-06-22T14:00:45,712 adding 'multiqc/modules/umitools/umitools.py' 2024-06-22T14:00:45,713 adding 'multiqc/modules/varscan2/__init__.py' 2024-06-22T14:00:45,715 adding 'multiqc/modules/varscan2/varscan2.py' 2024-06-22T14:00:45,717 adding 'multiqc/modules/vcftools/__init__.py' 2024-06-22T14:00:45,718 adding 'multiqc/modules/vcftools/relatedness2.py' 2024-06-22T14:00:45,719 adding 'multiqc/modules/vcftools/tstv_by_count.py' 2024-06-22T14:00:45,721 adding 'multiqc/modules/vcftools/tstv_by_qual.py' 2024-06-22T14:00:45,722 adding 'multiqc/modules/vcftools/tstv_summary.py' 2024-06-22T14:00:45,723 adding 'multiqc/modules/vcftools/vcftools.py' 2024-06-22T14:00:45,725 adding 'multiqc/modules/vep/__init__.py' 2024-06-22T14:00:45,727 adding 'multiqc/modules/vep/vep.py' 2024-06-22T14:00:45,728 adding 'multiqc/modules/verifybamid/__init__.py' 2024-06-22T14:00:45,731 adding 'multiqc/modules/verifybamid/verifybamid.py' 2024-06-22T14:00:45,732 adding 'multiqc/modules/whatshap/__init__.py' 2024-06-22T14:00:45,734 adding 'multiqc/modules/whatshap/whatshap.py' 2024-06-22T14:00:45,736 adding 'multiqc/modules/xengsort/__init__.py' 2024-06-22T14:00:45,737 adding 'multiqc/modules/xengsort/xengsort.py' 2024-06-22T14:00:45,739 adding 'multiqc/modules/xenome/__init__.py' 2024-06-22T14:00:45,741 adding 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2024-06-22T14:00:45,775 adding 'multiqc/plots/plotly/table.py' 2024-06-22T14:00:45,778 adding 'multiqc/plots/plotly/violin.py' 2024-06-22T14:00:45,780 adding 'multiqc/templates/__init__.py' 2024-06-22T14:00:45,782 adding 'multiqc/templates/default/__init__.py' 2024-06-22T14:00:45,783 adding 'multiqc/templates/default/base.html' 2024-06-22T14:00:45,784 adding 'multiqc/templates/default/content.html' 2024-06-22T14:00:45,785 adding 'multiqc/templates/default/foot.html' 2024-06-22T14:00:45,786 adding 'multiqc/templates/default/footer.html' 2024-06-22T14:00:45,787 adding 'multiqc/templates/default/general_stats.html' 2024-06-22T14:00:45,788 adding 'multiqc/templates/default/head.html' 2024-06-22T14:00:45,790 adding 'multiqc/templates/default/header.html' 2024-06-22T14:00:45,791 adding 'multiqc/templates/default/includes.html' 2024-06-22T14:00:45,792 adding 'multiqc/templates/default/nav.html' 2024-06-22T14:00:45,794 adding 'multiqc/templates/default/toolbox.html' 2024-06-22T14:00:45,805 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2024-06-22T14:00:47,460 adding 'multiqc/templates/geo/assets/img/flames.gif' 2024-06-22T14:00:47,462 adding 'multiqc/templates/geo/assets/img/glyphicons-halflings-white.png' 2024-06-22T14:00:47,464 adding 'multiqc/templates/geo/assets/img/glyphicons-halflings.png' 2024-06-22T14:00:47,467 adding 'multiqc/templates/geo/assets/img/hot.gif' 2024-06-22T14:00:47,476 adding 'multiqc/templates/geo/assets/img/mchammer.gif' 2024-06-22T14:00:47,480 adding 'multiqc/templates/geo/assets/img/microfab.gif' 2024-06-22T14:00:47,481 adding 'multiqc/templates/geo/assets/img/new.gif' 2024-06-22T14:00:47,483 adding 'multiqc/templates/geo/assets/img/new2.gif' 2024-06-22T14:00:47,485 adding 'multiqc/templates/geo/assets/img/progress.gif' 2024-06-22T14:00:47,486 adding 'multiqc/templates/geo/assets/img/rainbow.gif' 2024-06-22T14:00:47,488 adding 'multiqc/templates/geo/assets/img/stars.gif' 2024-06-22T14:00:47,490 adding 'multiqc/templates/sections/__init__.py' 2024-06-22T14:00:47,491 adding 'multiqc/templates/sections/content.html' 2024-06-22T14:00:47,493 adding 'multiqc/templates/simple/__init__.py' 2024-06-22T14:00:47,494 adding 'multiqc/templates/simple/foot.html' 2024-06-22T14:00:47,496 adding 'multiqc/templates/simple/header.html' 2024-06-22T14:00:47,497 adding 'multiqc/templates/simple/includes.html' 2024-06-22T14:00:47,498 adding 'multiqc/templates/simple/nav.html' 2024-06-22T14:00:47,499 adding 'multiqc/templates/simple/toolbox.html' 2024-06-22T14:00:47,501 adding 'multiqc/utils/__init__.py' 2024-06-22T14:00:47,502 adding 'multiqc/utils/config.py' 2024-06-22T14:00:47,504 adding 'multiqc/utils/megaqc.py' 2024-06-22T14:00:47,506 adding 'multiqc/utils/mqc_colour.py' 2024-06-22T14:00:47,507 adding 'multiqc/utils/report.py' 2024-06-22T14:00:47,508 adding 'multiqc/utils/testing.py' 2024-06-22T14:00:47,511 adding 'multiqc/utils/util_functions.py' 2024-06-22T14:00:47,517 adding 'multiqc-1.22.3.dist-info/LICENSE' 2024-06-22T14:00:47,524 adding 'multiqc-1.22.3.dist-info/METADATA' 2024-06-22T14:00:47,525 adding 'multiqc-1.22.3.dist-info/WHEEL' 2024-06-22T14:00:47,526 adding 'multiqc-1.22.3.dist-info/entry_points.txt' 2024-06-22T14:00:47,527 adding 'multiqc-1.22.3.dist-info/top_level.txt' 2024-06-22T14:00:47,536 adding 'multiqc-1.22.3.dist-info/RECORD' 2024-06-22T14:00:47,600 removing build/bdist.linux-armv7l/wheel 2024-06-22T14:00:47,899 Building wheel for multiqc (pyproject.toml): finished with status 'done' 2024-06-22T14:00:48,001 Created wheel for multiqc: filename=multiqc-1.22.3-py3-none-any.whl size=4486348 sha256=6af0a3d52e84998e7623ce3466d37d3da72c00ed69ec8dd93e118144ed78a223 2024-06-22T14:00:48,002 Stored in directory: /tmp/pip-ephem-wheel-cache-vrrxk554/wheels/8a/3d/64/67322d33d957555a2dc128729cbff9de1f569329c66e83af37 2024-06-22T14:00:48,051 Successfully built multiqc 2024-06-22T14:00:48,183 Removed build tracker: '/tmp/pip-build-tracker-ycpilfky'