2024-06-24T17:31:31,300 Created temporary directory: /tmp/pip-build-tracker-jhezgpr7 2024-06-24T17:31:31,301 Initialized build tracking at /tmp/pip-build-tracker-jhezgpr7 2024-06-24T17:31:31,302 Created build tracker: /tmp/pip-build-tracker-jhezgpr7 2024-06-24T17:31:31,302 Entered build tracker: /tmp/pip-build-tracker-jhezgpr7 2024-06-24T17:31:31,303 Created temporary directory: /tmp/pip-wheel-i9yz0krs 2024-06-24T17:31:31,306 Created temporary directory: /tmp/pip-ephem-wheel-cache-iy0xs_cs 2024-06-24T17:31:31,328 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2024-06-24T17:31:31,332 2 location(s) to search for versions of genomicranges: 2024-06-24T17:31:31,332 * https://pypi.org/simple/genomicranges/ 2024-06-24T17:31:31,332 * https://www.piwheels.org/simple/genomicranges/ 2024-06-24T17:31:31,333 Fetching project page and analyzing links: https://pypi.org/simple/genomicranges/ 2024-06-24T17:31:31,333 Getting page https://pypi.org/simple/genomicranges/ 2024-06-24T17:31:31,335 Found index url https://pypi.org/simple/ 2024-06-24T17:31:31,552 Fetched page https://pypi.org/simple/genomicranges/ as application/vnd.pypi.simple.v1+json 2024-06-24T17:31:31,568 Skipping link: No binaries permitted for genomicranges: https://files.pythonhosted.org/packages/09/b1/66124bd9f9466a6670dd49719d48f75e2c8ee39ee62b845fe2281dd5129c/GenomicRanges-0.1-py3-none-any.whl (from https://pypi.org/simple/genomicranges/) 2024-06-24T17:31:31,569 Found link https://files.pythonhosted.org/packages/f8/98/3e3203fd5e657991befa44e2dea23ec2df2c2b5573af9accdd3ddb7672b1/GenomicRanges-0.1.tar.gz (from https://pypi.org/simple/genomicranges/), version: 0.1 2024-06-24T17:31:31,569 Skipping link: No binaries permitted for genomicranges: https://files.pythonhosted.org/packages/31/29/8def5a85d78239bc4ece55984934faf89c0e0fa3afe7eddae7e83603d101/GenomicRanges-0.1.1-py3-none-any.whl (from https://pypi.org/simple/genomicranges/) 2024-06-24T17:31:31,570 Found link 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Found index url https://www.piwheels.org/simple/ 2024-06-24T17:31:31,792 Fetched page https://www.piwheels.org/simple/genomicranges/ as text/html 2024-06-24T17:31:31,804 Skipping link: No binaries permitted for genomicranges: https://www.piwheels.org/simple/genomicranges/GenomicRanges-0.4.21-py3-none-any.whl#sha256=1e9fafd36d8da40d18f2610db84e667d768e1f6cce20ea149f9e877634ccd620 (from https://www.piwheels.org/simple/genomicranges/) (requires-python:>=3.8) 2024-06-24T17:31:31,804 Skipping link: No binaries permitted for genomicranges: https://www.piwheels.org/simple/genomicranges/GenomicRanges-0.4.20-py3-none-any.whl#sha256=93f31397ba5ed6610cfcf3a9f2b03b81b4aeb17d3228ce93e43f64efeea1f793 (from https://www.piwheels.org/simple/genomicranges/) (requires-python:>=3.8) 2024-06-24T17:31:31,805 Skipping link: No binaries permitted for genomicranges: 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https://www.piwheels.org/simple/genomicranges/GenomicRanges-0.3.2-py3-none-any.whl#sha256=68deafb8741041a13412895e82ef06def5f2a5f514c1cde965a1766efa082c63 (from https://www.piwheels.org/simple/genomicranges/) 2024-06-24T17:31:31,821 Skipping link: No binaries permitted for genomicranges: https://www.piwheels.org/simple/genomicranges/GenomicRanges-0.3.1-py3-none-any.whl#sha256=c4a97b2717b3a0b88ae3ed009b4108bdbf1551ca0681cd34693640691ed60055 (from https://www.piwheels.org/simple/genomicranges/) 2024-06-24T17:31:31,821 Skipping link: No binaries permitted for genomicranges: https://www.piwheels.org/simple/genomicranges/GenomicRanges-0.3.0-py3-none-any.whl#sha256=15248b27bbab74733cf4c0dadf50d1fa627224bf941bde7ed434a6863c1d050f (from https://www.piwheels.org/simple/genomicranges/) 2024-06-24T17:31:31,822 Skipping link: No binaries permitted for genomicranges: https://www.piwheels.org/simple/genomicranges/GenomicRanges-0.2.11-py3-none-any.whl#sha256=72c2a0a069c8fdb4f2059ffd8cfb47ff97157d9dbb5fd87161bf7d4104e4a2d0 (from https://www.piwheels.org/simple/genomicranges/) 2024-06-24T17:31:31,822 Skipping link: No binaries permitted for genomicranges: https://www.piwheels.org/simple/genomicranges/GenomicRanges-0.2.10-py3-none-any.whl#sha256=abc0817f98cef65ef6943baf043e2d2cfc5e5cf9a6ea220b58906c4d70b20cb4 (from https://www.piwheels.org/simple/genomicranges/) 2024-06-24T17:31:31,823 Skipping link: No binaries permitted for genomicranges: https://www.piwheels.org/simple/genomicranges/GenomicRanges-0.2.9-py3-none-any.whl#sha256=d7b7e7960a63c230fd75207a41e19706e11e041a9ecf7af20c5b23ebdd52dd02 (from https://www.piwheels.org/simple/genomicranges/) 2024-06-24T17:31:31,823 Skipping link: No binaries permitted for genomicranges: https://www.piwheels.org/simple/genomicranges/GenomicRanges-0.2.8-py3-none-any.whl#sha256=42e4e909776464a152ea9dcfc35151bc640b422400c40b9a0c545c00bab439cc (from https://www.piwheels.org/simple/genomicranges/) 2024-06-24T17:31:31,824 Skipping link: No binaries permitted for genomicranges: https://www.piwheels.org/simple/genomicranges/GenomicRanges-0.2.7-py3-none-any.whl#sha256=708985949d6f680693bf3e0a9731e999f85d8d39b59c26514544543a46df46cf (from https://www.piwheels.org/simple/genomicranges/) 2024-06-24T17:31:31,824 Skipping link: No binaries permitted for genomicranges: https://www.piwheels.org/simple/genomicranges/GenomicRanges-0.2.6-py3-none-any.whl#sha256=319269c9ff09b906843541695c9c9ab49813f2760549ffc9bc1aeb5f48cdbc7a (from https://www.piwheels.org/simple/genomicranges/) 2024-06-24T17:31:31,825 Skipping link: No binaries permitted for genomicranges: https://www.piwheels.org/simple/genomicranges/GenomicRanges-0.2-py3-none-any.whl#sha256=13e5945ef21f2d062b6268ed8399dee27baa6e7f567898334ff5bce7f690c995 (from https://www.piwheels.org/simple/genomicranges/) 2024-06-24T17:31:31,825 Skipping link: No binaries permitted for genomicranges: https://www.piwheels.org/simple/genomicranges/GenomicRanges-0.1.1-py3-none-any.whl#sha256=6728545e04f3d54afc4ef16ea9e031842e6a1d3db474b34c2dd7b0af700be3d6 (from https://www.piwheels.org/simple/genomicranges/) 2024-06-24T17:31:31,826 Skipping link: No binaries permitted for genomicranges: https://www.piwheels.org/simple/genomicranges/GenomicRanges-0.1-py3-none-any.whl#sha256=d2109a9a366cf41f6ee4a8d33fd2c3ec02a2048d4fb5d7468801e434b6c1ee4c (from https://www.piwheels.org/simple/genomicranges/) 2024-06-24T17:31:31,827 Skipping link: not a file: https://www.piwheels.org/simple/genomicranges/ 2024-06-24T17:31:31,827 Skipping link: not a file: https://pypi.org/simple/genomicranges/ 2024-06-24T17:31:31,852 Given no hashes to check 1 links for project 'genomicranges': discarding no candidates 2024-06-24T17:31:31,872 Collecting genomicranges==0.4.22 2024-06-24T17:31:31,874 Created temporary directory: /tmp/pip-unpack-lt1ywfif 2024-06-24T17:31:32,088 Downloading genomicranges-0.4.22.tar.gz (66 kB) 2024-06-24T17:31:32,256 Added genomicranges==0.4.22 from https://files.pythonhosted.org/packages/9b/ed/793e9c1724d58b0b97db315978a8839f8d38ea1f6ed3a69355dff4ece2e9/genomicranges-0.4.22.tar.gz to build tracker '/tmp/pip-build-tracker-jhezgpr7' 2024-06-24T17:31:32,263 Created temporary directory: /tmp/pip-build-env-f91jhcrc 2024-06-24T17:31:32,268 Installing build dependencies: started 2024-06-24T17:31:32,269 Running command pip subprocess to install build dependencies 2024-06-24T17:31:33,426 Using pip 24.0 from /usr/local/lib/python3.11/dist-packages/pip (python 3.11) 2024-06-24T17:31:33,932 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2024-06-24T17:31:35,414 Collecting setuptools>=46.1.0 2024-06-24T17:31:35,429 Using cached https://www.piwheels.org/simple/setuptools/setuptools-70.1.0-py3-none-any.whl (882 kB) 2024-06-24T17:31:35,740 Collecting setuptools_scm>=5 (from setuptools_scm[toml]>=5) 2024-06-24T17:31:35,754 Using cached https://www.piwheels.org/simple/setuptools-scm/setuptools_scm-8.1.0-py3-none-any.whl (43 kB) 2024-06-24T17:31:35,955 Collecting wheel 2024-06-24T17:31:35,969 Using cached https://www.piwheels.org/simple/wheel/wheel-0.43.0-py3-none-any.whl (65 kB) 2024-06-24T17:31:36,295 Collecting packaging>=20 (from setuptools_scm>=5->setuptools_scm[toml]>=5) 2024-06-24T17:31:36,312 Using cached https://www.piwheels.org/simple/packaging/packaging-24.1-py3-none-any.whl (53 kB) 2024-06-24T17:31:38,919 Installing collected packages: wheel, setuptools, packaging, setuptools_scm 2024-06-24T17:31:39,149 Creating /tmp/pip-build-env-f91jhcrc/overlay/local/bin 2024-06-24T17:31:39,151 changing mode of /tmp/pip-build-env-f91jhcrc/overlay/local/bin/wheel to 755 2024-06-24T17:31:41,924 Successfully installed packaging-24.1 setuptools-70.1.0 setuptools_scm-8.1.0 wheel-0.43.0 2024-06-24T17:31:42,229 [notice] A new release of pip is available: 24.0 -> 24.1 2024-06-24T17:31:42,229 [notice] To update, run: python3 -m pip install --upgrade pip 2024-06-24T17:31:42,516 Installing build dependencies: finished with status 'done' 2024-06-24T17:31:42,519 Getting requirements to build wheel: started 2024-06-24T17:31:42,520 Running command Getting requirements to build wheel 2024-06-24T17:31:43,267 running egg_info 2024-06-24T17:31:43,272 writing src/GenomicRanges.egg-info/PKG-INFO 2024-06-24T17:31:43,281 writing dependency_links to src/GenomicRanges.egg-info/dependency_links.txt 2024-06-24T17:31:43,285 writing requirements to src/GenomicRanges.egg-info/requires.txt 2024-06-24T17:31:43,287 writing top-level names to src/GenomicRanges.egg-info/top_level.txt 2024-06-24T17:31:43,334 ERROR setuptools_scm._file_finders.git listing git files failed - pretending there aren't any 2024-06-24T17:31:43,338 reading manifest file 'src/GenomicRanges.egg-info/SOURCES.txt' 2024-06-24T17:31:43,342 adding license file 'LICENSE.txt' 2024-06-24T17:31:43,346 writing manifest file 'src/GenomicRanges.egg-info/SOURCES.txt' 2024-06-24T17:31:43,435 Getting requirements to build wheel: finished with status 'done' 2024-06-24T17:31:43,438 Created temporary directory: /tmp/pip-modern-metadata-s6mpvw1d 2024-06-24T17:31:43,440 Preparing metadata (pyproject.toml): started 2024-06-24T17:31:43,442 Running command Preparing metadata (pyproject.toml) 2024-06-24T17:31:44,087 running dist_info 2024-06-24T17:31:44,094 creating /tmp/pip-modern-metadata-s6mpvw1d/GenomicRanges.egg-info 2024-06-24T17:31:44,099 writing /tmp/pip-modern-metadata-s6mpvw1d/GenomicRanges.egg-info/PKG-INFO 2024-06-24T17:31:44,109 writing dependency_links to /tmp/pip-modern-metadata-s6mpvw1d/GenomicRanges.egg-info/dependency_links.txt 2024-06-24T17:31:44,113 writing requirements to /tmp/pip-modern-metadata-s6mpvw1d/GenomicRanges.egg-info/requires.txt 2024-06-24T17:31:44,115 writing top-level names to /tmp/pip-modern-metadata-s6mpvw1d/GenomicRanges.egg-info/top_level.txt 2024-06-24T17:31:44,117 writing manifest file '/tmp/pip-modern-metadata-s6mpvw1d/GenomicRanges.egg-info/SOURCES.txt' 2024-06-24T17:31:44,160 ERROR setuptools_scm._file_finders.git listing git files failed - pretending there aren't any 2024-06-24T17:31:44,164 reading manifest file '/tmp/pip-modern-metadata-s6mpvw1d/GenomicRanges.egg-info/SOURCES.txt' 2024-06-24T17:31:44,167 adding license file 'LICENSE.txt' 2024-06-24T17:31:44,169 writing manifest file '/tmp/pip-modern-metadata-s6mpvw1d/GenomicRanges.egg-info/SOURCES.txt' 2024-06-24T17:31:44,170 creating '/tmp/pip-modern-metadata-s6mpvw1d/GenomicRanges-0.4.22.dist-info' 2024-06-24T17:31:44,307 Preparing metadata (pyproject.toml): finished with status 'done' 2024-06-24T17:31:44,312 Source in /tmp/pip-wheel-i9yz0krs/genomicranges_c437d1c9c96d4c2e81fa25c49d6268e6 has version 0.4.22, which satisfies requirement genomicranges==0.4.22 from https://files.pythonhosted.org/packages/9b/ed/793e9c1724d58b0b97db315978a8839f8d38ea1f6ed3a69355dff4ece2e9/genomicranges-0.4.22.tar.gz 2024-06-24T17:31:44,313 Removed genomicranges==0.4.22 from https://files.pythonhosted.org/packages/9b/ed/793e9c1724d58b0b97db315978a8839f8d38ea1f6ed3a69355dff4ece2e9/genomicranges-0.4.22.tar.gz from build tracker '/tmp/pip-build-tracker-jhezgpr7' 2024-06-24T17:31:44,320 Created temporary directory: /tmp/pip-unpack-mlfiyt7f 2024-06-24T17:31:44,321 Created temporary directory: /tmp/pip-unpack-vbymjiyr 2024-06-24T17:31:44,372 Building wheels for collected packages: genomicranges 2024-06-24T17:31:44,378 Created temporary directory: /tmp/pip-wheel-2ekvke5m 2024-06-24T17:31:44,378 Destination directory: /tmp/pip-wheel-2ekvke5m 2024-06-24T17:31:44,381 Building wheel for genomicranges (pyproject.toml): started 2024-06-24T17:31:44,382 Running command Building wheel for genomicranges (pyproject.toml) 2024-06-24T17:31:45,005 running bdist_wheel 2024-06-24T17:31:45,051 running build 2024-06-24T17:31:45,052 running build_py 2024-06-24T17:31:45,060 creating build 2024-06-24T17:31:45,060 creating build/lib 2024-06-24T17:31:45,061 creating build/lib/genomicranges 2024-06-24T17:31:45,062 copying src/genomicranges/SeqInfo.py -> build/lib/genomicranges 2024-06-24T17:31:45,065 copying src/genomicranges/GenomicRangesList.py -> build/lib/genomicranges 2024-06-24T17:31:45,067 copying src/genomicranges/utils.py -> build/lib/genomicranges 2024-06-24T17:31:45,069 copying src/genomicranges/GenomicRanges.py -> build/lib/genomicranges 2024-06-24T17:31:45,073 copying src/genomicranges/__init__.py -> build/lib/genomicranges 2024-06-24T17:31:45,075 creating build/lib/genomicranges/io 2024-06-24T17:31:45,076 copying src/genomicranges/io/ucsc.py -> build/lib/genomicranges/io 2024-06-24T17:31:45,078 copying src/genomicranges/io/__init__.py -> build/lib/genomicranges/io 2024-06-24T17:31:45,079 copying src/genomicranges/io/gtf.py -> build/lib/genomicranges/io 2024-06-24T17:31:45,081 running egg_info 2024-06-24T17:31:45,088 writing src/GenomicRanges.egg-info/PKG-INFO 2024-06-24T17:31:45,096 writing dependency_links to src/GenomicRanges.egg-info/dependency_links.txt 2024-06-24T17:31:45,100 writing requirements to src/GenomicRanges.egg-info/requires.txt 2024-06-24T17:31:45,101 writing top-level names to src/GenomicRanges.egg-info/top_level.txt 2024-06-24T17:31:45,132 ERROR setuptools_scm._file_finders.git listing git files failed - pretending there aren't any 2024-06-24T17:31:45,135 reading manifest file 'src/GenomicRanges.egg-info/SOURCES.txt' 2024-06-24T17:31:45,138 adding license file 'LICENSE.txt' 2024-06-24T17:31:45,141 writing manifest file 'src/GenomicRanges.egg-info/SOURCES.txt' 2024-06-24T17:31:45,157 installing to build/bdist.linux-armv7l/wheel 2024-06-24T17:31:45,157 running install 2024-06-24T17:31:45,181 running install_lib 2024-06-24T17:31:45,190 creating build/bdist.linux-armv7l 2024-06-24T17:31:45,190 creating build/bdist.linux-armv7l/wheel 2024-06-24T17:31:45,192 creating build/bdist.linux-armv7l/wheel/genomicranges 2024-06-24T17:31:45,193 copying build/lib/genomicranges/SeqInfo.py -> build/bdist.linux-armv7l/wheel/genomicranges 2024-06-24T17:31:45,196 copying build/lib/genomicranges/GenomicRangesList.py -> build/bdist.linux-armv7l/wheel/genomicranges 2024-06-24T17:31:45,198 copying build/lib/genomicranges/utils.py -> build/bdist.linux-armv7l/wheel/genomicranges 2024-06-24T17:31:45,201 copying build/lib/genomicranges/GenomicRanges.py -> build/bdist.linux-armv7l/wheel/genomicranges 2024-06-24T17:31:45,205 creating build/bdist.linux-armv7l/wheel/genomicranges/io 2024-06-24T17:31:45,207 copying build/lib/genomicranges/io/ucsc.py -> build/bdist.linux-armv7l/wheel/genomicranges/io 2024-06-24T17:31:45,209 copying build/lib/genomicranges/io/__init__.py -> build/bdist.linux-armv7l/wheel/genomicranges/io 2024-06-24T17:31:45,210 copying build/lib/genomicranges/io/gtf.py -> build/bdist.linux-armv7l/wheel/genomicranges/io 2024-06-24T17:31:45,212 copying build/lib/genomicranges/__init__.py -> build/bdist.linux-armv7l/wheel/genomicranges 2024-06-24T17:31:45,213 running install_egg_info 2024-06-24T17:31:45,222 Copying src/GenomicRanges.egg-info to build/bdist.linux-armv7l/wheel/GenomicRanges-0.4.22-py3.11.egg-info 2024-06-24T17:31:45,233 running install_scripts 2024-06-24T17:31:45,250 creating build/bdist.linux-armv7l/wheel/GenomicRanges-0.4.22.dist-info/WHEEL 2024-06-24T17:31:45,252 creating '/tmp/pip-wheel-2ekvke5m/.tmp-druum73r/GenomicRanges-0.4.22-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2024-06-24T17:31:45,263 adding 'genomicranges/GenomicRanges.py' 2024-06-24T17:31:45,267 adding 'genomicranges/GenomicRangesList.py' 2024-06-24T17:31:45,270 adding 'genomicranges/SeqInfo.py' 2024-06-24T17:31:45,271 adding 'genomicranges/__init__.py' 2024-06-24T17:31:45,273 adding 'genomicranges/utils.py' 2024-06-24T17:31:45,275 adding 'genomicranges/io/__init__.py' 2024-06-24T17:31:45,276 adding 'genomicranges/io/gtf.py' 2024-06-24T17:31:45,278 adding 'genomicranges/io/ucsc.py' 2024-06-24T17:31:45,279 adding 'GenomicRanges-0.4.22.dist-info/LICENSE.txt' 2024-06-24T17:31:45,281 adding 'GenomicRanges-0.4.22.dist-info/METADATA' 2024-06-24T17:31:45,282 adding 'GenomicRanges-0.4.22.dist-info/WHEEL' 2024-06-24T17:31:45,283 adding 'GenomicRanges-0.4.22.dist-info/top_level.txt' 2024-06-24T17:31:45,284 adding 'GenomicRanges-0.4.22.dist-info/RECORD' 2024-06-24T17:31:45,286 removing build/bdist.linux-armv7l/wheel 2024-06-24T17:31:45,385 Building wheel for genomicranges (pyproject.toml): finished with status 'done' 2024-06-24T17:31:45,390 Created wheel for genomicranges: filename=GenomicRanges-0.4.22-py3-none-any.whl size=35937 sha256=2959820085e11e0785ed20c0b6a578d0c2febd411fc53e095ac77a28f42679a5 2024-06-24T17:31:45,391 Stored in directory: /tmp/pip-ephem-wheel-cache-iy0xs_cs/wheels/a5/85/20/464d468f1fdfd3c09eaa5fb57830483545196d64895e41e073 2024-06-24T17:31:45,404 Successfully built genomicranges 2024-06-24T17:31:45,408 Removed build tracker: '/tmp/pip-build-tracker-jhezgpr7'