2024-06-25T14:09:44,655 Created temporary directory: /tmp/pip-build-tracker-7qt2b_8h 2024-06-25T14:09:44,656 Initialized build tracking at /tmp/pip-build-tracker-7qt2b_8h 2024-06-25T14:09:44,657 Created build tracker: /tmp/pip-build-tracker-7qt2b_8h 2024-06-25T14:09:44,657 Entered build tracker: /tmp/pip-build-tracker-7qt2b_8h 2024-06-25T14:09:44,658 Created temporary directory: /tmp/pip-wheel-gnu3zgrg 2024-06-25T14:09:44,661 Created temporary directory: /tmp/pip-ephem-wheel-cache-huzq7ee8 2024-06-25T14:09:44,684 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2024-06-25T14:09:44,687 2 location(s) to search for versions of pyslow5: 2024-06-25T14:09:44,687 * https://pypi.org/simple/pyslow5/ 2024-06-25T14:09:44,687 * https://www.piwheels.org/simple/pyslow5/ 2024-06-25T14:09:44,688 Fetching project page and analyzing links: https://pypi.org/simple/pyslow5/ 2024-06-25T14:09:44,689 Getting page https://pypi.org/simple/pyslow5/ 2024-06-25T14:09:44,690 Found index url https://pypi.org/simple/ 2024-06-25T14:09:44,904 Fetched page https://pypi.org/simple/pyslow5/ as application/vnd.pypi.simple.v1+json 2024-06-25T14:09:44,912 Found link https://files.pythonhosted.org/packages/23/0d/38c8cfedd09e7f753347b6ecd717a101c7236daf2ecccb34d44cedc6f125/pyslow5-0.2.0a1.tar.gz (from https://pypi.org/simple/pyslow5/), version: 0.2.0a1 2024-06-25T14:09:44,913 Found link https://files.pythonhosted.org/packages/41/8b/eed2c94d79c0af2a69cddfcbc774697dbac35e0a053f7bfd452a629aca4a/pyslow5-0.3.0a1.tar.gz (from https://pypi.org/simple/pyslow5/) (requires-python:>=3.4.3), version: 0.3.0a1 2024-06-25T14:09:44,914 Found link https://files.pythonhosted.org/packages/f5/5d/dbbfdb907972c60c3df0cf2e055b307101f0244717b3b84bc58db8c5fe5c/pyslow5-0.3.0.tar.gz (from https://pypi.org/simple/pyslow5/) (requires-python:>=3.4.3), version: 0.3.0 2024-06-25T14:09:44,915 Found link https://files.pythonhosted.org/packages/83/db/b907cf8f56a7d32c7daf087cd83050b6fcf5e9fc0bf16c6bd1a685b98831/pyslow5-0.4.0.tar.gz (from https://pypi.org/simple/pyslow5/) (requires-python:>=3.4.3), version: 0.4.0 2024-06-25T14:09:44,916 Found link https://files.pythonhosted.org/packages/bd/f7/a70be3cd8265e6b5f12819526b90c1a6cb86a3e515da2831c99858f9a239/pyslow5-0.5.0a1.tar.gz (from https://pypi.org/simple/pyslow5/) (requires-python:>=3.4.3), version: 0.5.0a1 2024-06-25T14:09:44,917 Found link https://files.pythonhosted.org/packages/f2/8e/cc65540c51e93847d6d6302b2fff701ee10e464898844414449e05a4d333/pyslow5-0.5.0a2.tar.gz (from https://pypi.org/simple/pyslow5/) (requires-python:>=3.4.3), version: 0.5.0a2 2024-06-25T14:09:44,918 Found link https://files.pythonhosted.org/packages/ad/4a/43f267cff4fac073b610a2b1eeb219c0be3ca775c937e3811c438ee2577e/pyslow5-0.5.0.tar.gz (from https://pypi.org/simple/pyslow5/) (requires-python:>=3.4.3), version: 0.5.0 2024-06-25T14:09:44,919 Found link https://files.pythonhosted.org/packages/3b/8b/a5bb994f4c963f8b969ab4a8c4c46f01ed4b95239fbb2b1180c77452f50b/pyslow5-0.6.0.tar.gz (from https://pypi.org/simple/pyslow5/) (requires-python:>=3.4.3), version: 0.6.0 2024-06-25T14:09:44,920 Found link https://files.pythonhosted.org/packages/04/d6/970f6da0fce1afd315a3e763ec8a7175791cce0ef5d08968a5fef2c0add0/pyslow5-0.7.0.tar.gz (from https://pypi.org/simple/pyslow5/) (requires-python:>=3.4.3), version: 0.7.0 2024-06-25T14:09:44,922 Found link https://files.pythonhosted.org/packages/d5/aa/815199ef79e407b2fba5e16b8d83c2bb7e00a640d30e67921d2f672e0d9d/pyslow5-0.8.0.tar.gz (from https://pypi.org/simple/pyslow5/) (requires-python:>=3.4.3), version: 0.8.0 2024-06-25T14:09:44,923 Found link https://files.pythonhosted.org/packages/28/1e/d4377af23de1ab4535ebe911e6b34afa6ee5d8a33a9b20388076f3ebca2e/pyslow5-0.9.0.tar.gz (from https://pypi.org/simple/pyslow5/) (requires-python:>=3.4.3), version: 0.9.0 2024-06-25T14:09:44,924 Found link https://files.pythonhosted.org/packages/78/f1/0f9a1ed7f046356b78aee6ff4f254898012b0c0a61e06eec7c5248099a0c/pyslow5-1.0.0.tar.gz (from https://pypi.org/simple/pyslow5/) (requires-python:>=3.4.3), version: 1.0.0 2024-06-25T14:09:44,924 Skipping link: No binaries permitted for pyslow5: https://files.pythonhosted.org/packages/31/2a/88c40313ad647d922cf2453f0d049aa90da7de1158f38f959d42a351d690/pyslow5-1.0.1b0-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/pyslow5/) (requires-python:>=3.4.3) 2024-06-25T14:09:44,925 Skipping link: No binaries permitted for pyslow5: https://files.pythonhosted.org/packages/fe/21/024bf2a99f54ae23a902dc0a63e3226a8a57a614d4ed8e966ba71c6fbac6/pyslow5-1.0.1b0-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/pyslow5/) (requires-python:>=3.4.3) 2024-06-25T14:09:44,926 Skipping link: No binaries permitted for pyslow5: https://files.pythonhosted.org/packages/c9/60/9191d3f3731db61b6ce1da53a13b477c8227d7e94098e084f57147e7a347/pyslow5-1.0.1b0-cp35-cp35m-manylinux_2_5_x86_64.manylinux1_x86_64.whl (from https://pypi.org/simple/pyslow5/) (requires-python:>=3.4.3) 2024-06-25T14:09:44,927 Skipping link: No binaries permitted for pyslow5: https://files.pythonhosted.org/packages/e9/ec/f55a306a7ef3e43f0767e1c7ab3c0a9d958217114ca4e1b717cf6e6de661/pyslow5-1.0.1b0-cp36-cp36m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/pyslow5/) (requires-python:>=3.4.3) 2024-06-25T14:09:44,927 Skipping link: No binaries permitted for pyslow5: https://files.pythonhosted.org/packages/5e/61/07d1d57a6dd765e11f0012d69c3db83356e8f643bd8ee8d9b59809e52d8f/pyslow5-1.0.1b0-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/pyslow5/) (requires-python:>=3.4.3) 2024-06-25T14:09:44,928 Skipping link: No binaries permitted for pyslow5: https://files.pythonhosted.org/packages/03/db/b2c9f505d1b0f356959523d9f8d9cc569cab5751e80579d54932d0134d82/pyslow5-1.0.1b0-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/pyslow5/) (requires-python:>=3.4.3) 2024-06-25T14:09:44,928 Skipping link: No binaries permitted for pyslow5: https://files.pythonhosted.org/packages/fc/3c/910414b4d79718d4b9318fa617d5a74a58082b98e5bf8c63ede0cbce9fc5/pyslow5-1.0.1b0-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/pyslow5/) (requires-python:>=3.4.3) 2024-06-25T14:09:44,929 Found link https://files.pythonhosted.org/packages/9c/e4/60b7418bbd72939ed1e3ab3f3672901a876205ae27d2f4aa54a0a5d09411/pyslow5-1.0.1b0.tar.gz (from https://pypi.org/simple/pyslow5/) (requires-python:>=3.4.3), version: 1.0.1b0 2024-06-25T14:09:44,930 Skipping link: No binaries permitted for pyslow5: https://files.pythonhosted.org/packages/f2/f6/ebcd19e395231e3d6a7807cbf4e31e7b4b5316ff5183a5ef7c909c491038/pyslow5-1.1.0-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/pyslow5/) (requires-python:>=3.4.3) 2024-06-25T14:09:44,931 Skipping link: No binaries permitted for pyslow5: https://files.pythonhosted.org/packages/18/a7/7ec4d4a18b4f1f2a4de93bb7d29f01651e2b0203de24770624bee2f61971/pyslow5-1.1.0-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/pyslow5/) (requires-python:>=3.4.3) 2024-06-25T14:09:44,931 Skipping link: No binaries permitted for pyslow5: https://files.pythonhosted.org/packages/48/e2/8021a651d98bd1826272b67b7958d1a235becba7ecac011c071cb797a965/pyslow5-1.1.0-cp35-cp35m-manylinux_2_5_x86_64.manylinux1_x86_64.whl (from https://pypi.org/simple/pyslow5/) (requires-python:>=3.4.3) 2024-06-25T14:09:44,932 Skipping link: No binaries permitted for pyslow5: https://files.pythonhosted.org/packages/58/92/11b79557222a96a3d9efc6a7a4bdabdb2307d6b3e4cd2e44b5806d61a926/pyslow5-1.1.0-cp36-cp36m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/pyslow5/) (requires-python:>=3.4.3) 2024-06-25T14:09:44,933 Skipping link: No binaries permitted for pyslow5: https://files.pythonhosted.org/packages/f3/fb/9c71f2eba2d7adcc935eaa85ed61e85409eeeb3bf74f45192e04b079954a/pyslow5-1.1.0-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/pyslow5/) (requires-python:>=3.4.3) 2024-06-25T14:09:44,933 Skipping link: No binaries permitted for pyslow5: https://files.pythonhosted.org/packages/97/16/534a42c24cb4d14c05cf1001a5bd1c5a596c3beba755fd6f8be41921845a/pyslow5-1.1.0-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/pyslow5/) (requires-python:>=3.4.3) 2024-06-25T14:09:44,934 Skipping link: No binaries permitted for pyslow5: https://files.pythonhosted.org/packages/6a/9c/c379eda73ac5f913ba5351e6724fbdfb5c249caada336e661b79c7a10c6f/pyslow5-1.1.0-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/pyslow5/) (requires-python:>=3.4.3) 2024-06-25T14:09:44,935 Found link https://files.pythonhosted.org/packages/96/80/ef430871b57cb97e2ab2449140fd00deec6cd9e8c71249676d561a45862a/pyslow5-1.1.0.tar.gz (from https://pypi.org/simple/pyslow5/) (requires-python:>=3.4.3), version: 1.1.0 2024-06-25T14:09:44,935 Skipping link: No binaries permitted for pyslow5: https://files.pythonhosted.org/packages/ed/75/92c29964f34e48c8e4326a7576ec507117e23023d87a9f3aa5b3def15574/pyslow5-1.2.0-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/pyslow5/) (requires-python:>=3.4.3) 2024-06-25T14:09:44,936 Skipping link: No binaries permitted for pyslow5: https://files.pythonhosted.org/packages/9e/13/8159dd4662250081dbfadd9d9a60e5e909831711d0b06e0f50fb9cdce6d1/pyslow5-1.2.0-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/pyslow5/) (requires-python:>=3.4.3) 2024-06-25T14:09:44,936 Skipping link: No binaries permitted for pyslow5: https://files.pythonhosted.org/packages/18/de/c590c48a1f4a647af046ba0bdbcba57e0de59d377e95412c6b063f741f89/pyslow5-1.2.0-cp35-cp35m-manylinux_2_5_x86_64.manylinux1_x86_64.whl (from https://pypi.org/simple/pyslow5/) (requires-python:>=3.4.3) 2024-06-25T14:09:44,937 Skipping link: No binaries permitted for pyslow5: https://files.pythonhosted.org/packages/bc/83/547cf814c95f1c3cb824ae4f2227a83c69a6478dbc41715f43cc5fb856a2/pyslow5-1.2.0-cp36-cp36m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/pyslow5/) (requires-python:>=3.4.3) 2024-06-25T14:09:44,937 Skipping link: No binaries permitted for pyslow5: https://files.pythonhosted.org/packages/da/9d/96f10e54d4bc7f665cb38dd6e1da310f925e8be54282546913c0858e9b22/pyslow5-1.2.0-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/pyslow5/) (requires-python:>=3.4.3) 2024-06-25T14:09:44,938 Skipping link: No binaries permitted for pyslow5: https://files.pythonhosted.org/packages/2c/67/d33d77f36efef0d52a3f6e2240b6ec739693bf4cb269b71d4377edc6f50d/pyslow5-1.2.0-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/pyslow5/) (requires-python:>=3.4.3) 2024-06-25T14:09:44,938 Skipping link: No binaries permitted for pyslow5: https://files.pythonhosted.org/packages/57/c0/6cf7ebb8c14f84f0916c829f588d981b4ea7d5096988b37de756b825b64f/pyslow5-1.2.0-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/pyslow5/) (requires-python:>=3.4.3) 2024-06-25T14:09:44,939 Found link https://files.pythonhosted.org/packages/46/e0/7f6a9a85ad7eb2bb4c7da0faf39aaa936debce5abc7c713c53283402cc62/pyslow5-1.2.0.tar.gz (from https://pypi.org/simple/pyslow5/) (requires-python:>=3.4.3), version: 1.2.0 2024-06-25T14:09:44,940 Fetching project page and analyzing links: https://www.piwheels.org/simple/pyslow5/ 2024-06-25T14:09:44,941 Getting page https://www.piwheels.org/simple/pyslow5/ 2024-06-25T14:09:44,942 Found index url https://www.piwheels.org/simple/ 2024-06-25T14:09:45,098 Fetched page https://www.piwheels.org/simple/pyslow5/ as text/html 2024-06-25T14:09:45,117 Skipping link: No binaries permitted for pyslow5: https://www.piwheels.org/simple/pyslow5/pyslow5-1.1.0-cp39-cp39-linux_armv6l.whl#sha256=7962c023548d39a5a1f82046f74ca704d9c069c967e758a027eec6fb6181ea8f (from https://www.piwheels.org/simple/pyslow5/) (requires-python:>=3.4.3) 2024-06-25T14:09:45,118 Skipping link: No binaries permitted for pyslow5: 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https://www.piwheels.org/simple/pyslow5/pyslow5-0.3.0a1-cp39-cp39-linux_armv6l.whl#sha256=c237e6b28164ceb880925c3306fad541230757b454e99331d9e703e174f93044 (from https://www.piwheels.org/simple/pyslow5/) (requires-python:>=3.4.3) 2024-06-25T14:09:45,202 Skipping link: No binaries permitted for pyslow5: https://www.piwheels.org/simple/pyslow5/pyslow5-0.3.0a1-cp39-cp39-linux_armv7l.whl#sha256=c237e6b28164ceb880925c3306fad541230757b454e99331d9e703e174f93044 (from https://www.piwheels.org/simple/pyslow5/) (requires-python:>=3.4.3) 2024-06-25T14:09:45,202 Skipping link: No binaries permitted for pyslow5: https://www.piwheels.org/simple/pyslow5/pyslow5-0.2.0a1-cp35-cp35m-linux_armv6l.whl#sha256=778a99e023f739e757f3a8ac054aaf245b3c3855b3781ba5f9f17403f1f2f323 (from https://www.piwheels.org/simple/pyslow5/) (requires-python:>=3.4.3) 2024-06-25T14:09:45,203 Skipping link: No binaries permitted for pyslow5: https://www.piwheels.org/simple/pyslow5/pyslow5-0.2.0a1-cp35-cp35m-linux_armv7l.whl#sha256=778a99e023f739e757f3a8ac054aaf245b3c3855b3781ba5f9f17403f1f2f323 (from https://www.piwheels.org/simple/pyslow5/) (requires-python:>=3.4.3) 2024-06-25T14:09:45,203 Skipping link: No binaries permitted for pyslow5: https://www.piwheels.org/simple/pyslow5/pyslow5-0.2.0a1-cp37-cp37m-linux_armv6l.whl#sha256=1e44f77d160ed7f970085e6bbd34c072504cd012441dfab74f56f9115217f60a (from https://www.piwheels.org/simple/pyslow5/) (requires-python:>=3.4.3) 2024-06-25T14:09:45,204 Skipping link: No binaries permitted for pyslow5: https://www.piwheels.org/simple/pyslow5/pyslow5-0.2.0a1-cp37-cp37m-linux_armv7l.whl#sha256=1e44f77d160ed7f970085e6bbd34c072504cd012441dfab74f56f9115217f60a (from https://www.piwheels.org/simple/pyslow5/) (requires-python:>=3.4.3) 2024-06-25T14:09:45,205 Skipping link: No binaries permitted for pyslow5: https://www.piwheels.org/simple/pyslow5/pyslow5-0.2.0a1-cp39-cp39-linux_armv6l.whl#sha256=cde6479a69345d4c2bef55beeb0ab67909d74e8f91a2ec5ef1a0f390aaa3c0dd (from https://www.piwheels.org/simple/pyslow5/) (requires-python:>=3.4.3) 2024-06-25T14:09:45,205 Skipping link: No binaries permitted for pyslow5: https://www.piwheels.org/simple/pyslow5/pyslow5-0.2.0a1-cp39-cp39-linux_armv7l.whl#sha256=cde6479a69345d4c2bef55beeb0ab67909d74e8f91a2ec5ef1a0f390aaa3c0dd (from https://www.piwheels.org/simple/pyslow5/) (requires-python:>=3.4.3) 2024-06-25T14:09:45,206 Skipping link: not a file: https://www.piwheels.org/simple/pyslow5/ 2024-06-25T14:09:45,206 Skipping link: not a file: https://pypi.org/simple/pyslow5/ 2024-06-25T14:09:45,228 Given no hashes to check 1 links for project 'pyslow5': discarding no candidates 2024-06-25T14:09:45,247 Collecting pyslow5==1.2.0 2024-06-25T14:09:45,249 Created temporary directory: /tmp/pip-unpack-6ixubd83 2024-06-25T14:09:45,460 Downloading pyslow5-1.2.0.tar.gz (644 kB) 2024-06-25T14:09:45,973 Added pyslow5==1.2.0 from https://files.pythonhosted.org/packages/46/e0/7f6a9a85ad7eb2bb4c7da0faf39aaa936debce5abc7c713c53283402cc62/pyslow5-1.2.0.tar.gz to build tracker '/tmp/pip-build-tracker-7qt2b_8h' 2024-06-25T14:09:45,975 Running setup.py (path:/tmp/pip-wheel-gnu3zgrg/pyslow5_717447cc7aaf4dc59c1d285493f34ee0/setup.py) egg_info for package pyslow5 2024-06-25T14:09:45,976 Created temporary directory: /tmp/pip-pip-egg-info-fdsm522y 2024-06-25T14:09:45,977 Preparing metadata (setup.py): started 2024-06-25T14:09:45,978 Running command python setup.py egg_info 2024-06-25T14:09:47,296 /usr/local/lib/python3.11/dist-packages/setuptools/__init__.py:80: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. 2024-06-25T14:09:47,296 !! 2024-06-25T14:09:47,298 ******************************************************************************** 2024-06-25T14:09:47,298 Requirements should be satisfied by a PEP 517 installer. 2024-06-25T14:09:47,299 If you are using pip, you can try `pip install --use-pep517`. 2024-06-25T14:09:47,300 ******************************************************************************** 2024-06-25T14:09:47,301 !! 2024-06-25T14:09:47,302 dist.fetch_build_eggs(dist.setup_requires) 2024-06-25T14:09:47,499 running egg_info 2024-06-25T14:09:47,501 creating /tmp/pip-pip-egg-info-fdsm522y/pyslow5.egg-info 2024-06-25T14:09:47,527 writing /tmp/pip-pip-egg-info-fdsm522y/pyslow5.egg-info/PKG-INFO 2024-06-25T14:09:47,531 writing dependency_links to /tmp/pip-pip-egg-info-fdsm522y/pyslow5.egg-info/dependency_links.txt 2024-06-25T14:09:47,532 writing requirements to /tmp/pip-pip-egg-info-fdsm522y/pyslow5.egg-info/requires.txt 2024-06-25T14:09:47,533 writing top-level names to /tmp/pip-pip-egg-info-fdsm522y/pyslow5.egg-info/top_level.txt 2024-06-25T14:09:47,535 writing manifest file '/tmp/pip-pip-egg-info-fdsm522y/pyslow5.egg-info/SOURCES.txt' 2024-06-25T14:09:47,619 reading manifest file '/tmp/pip-pip-egg-info-fdsm522y/pyslow5.egg-info/SOURCES.txt' 2024-06-25T14:09:47,621 reading manifest template 'MANIFEST.in' 2024-06-25T14:09:47,639 writing manifest file '/tmp/pip-pip-egg-info-fdsm522y/pyslow5.egg-info/SOURCES.txt' 2024-06-25T14:09:47,791 Preparing metadata (setup.py): finished with status 'done' 2024-06-25T14:09:47,796 Source in /tmp/pip-wheel-gnu3zgrg/pyslow5_717447cc7aaf4dc59c1d285493f34ee0 has version 1.2.0, which satisfies requirement pyslow5==1.2.0 from https://files.pythonhosted.org/packages/46/e0/7f6a9a85ad7eb2bb4c7da0faf39aaa936debce5abc7c713c53283402cc62/pyslow5-1.2.0.tar.gz 2024-06-25T14:09:47,797 Removed pyslow5==1.2.0 from https://files.pythonhosted.org/packages/46/e0/7f6a9a85ad7eb2bb4c7da0faf39aaa936debce5abc7c713c53283402cc62/pyslow5-1.2.0.tar.gz from build tracker '/tmp/pip-build-tracker-7qt2b_8h' 2024-06-25T14:09:47,805 Created temporary directory: /tmp/pip-unpack-khpzg7ph 2024-06-25T14:09:47,806 Created temporary directory: /tmp/pip-unpack-494cesgf 2024-06-25T14:09:47,812 Building wheels for collected packages: pyslow5 2024-06-25T14:09:47,816 Created temporary directory: /tmp/pip-wheel-h5hgqnfv 2024-06-25T14:09:47,817 Building wheel for pyslow5 (setup.py): started 2024-06-25T14:09:47,818 Destination directory: /tmp/pip-wheel-h5hgqnfv 2024-06-25T14:09:47,818 Running command python setup.py bdist_wheel 2024-06-25T14:09:49,433 /usr/local/lib/python3.11/dist-packages/setuptools/__init__.py:80: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. 2024-06-25T14:09:49,433 !! 2024-06-25T14:09:49,434 ******************************************************************************** 2024-06-25T14:09:49,435 Requirements should be satisfied by a PEP 517 installer. 2024-06-25T14:09:49,435 If you are using pip, you can try `pip install --use-pep517`. 2024-06-25T14:09:49,436 ******************************************************************************** 2024-06-25T14:09:49,437 !! 2024-06-25T14:09:49,437 dist.fetch_build_eggs(dist.setup_requires) 2024-06-25T14:09:49,632 running bdist_wheel 2024-06-25T14:09:49,767 running build 2024-06-25T14:09:49,768 running build_ext 2024-06-25T14:09:50,462 building 'pyslow5' extension 2024-06-25T14:09:50,463 creating build 2024-06-25T14:09:50,464 creating build/temp.linux-armv7l-cpython-311 2024-06-25T14:09:50,465 creating build/temp.linux-armv7l-cpython-311/python 2024-06-25T14:09:50,466 creating build/temp.linux-armv7l-cpython-311/src 2024-06-25T14:09:50,467 creating build/temp.linux-armv7l-cpython-311/thirdparty 2024-06-25T14:09:50,467 creating build/temp.linux-armv7l-cpython-311/thirdparty/streamvbyte 2024-06-25T14:09:50,468 creating build/temp.linux-armv7l-cpython-311/thirdparty/streamvbyte/src 2024-06-25T14:09:50,469 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Iinclude/ -I/usr/local/lib/python3.11/dist-packages/numpy/core/include -Ithirdparty/streamvbyte/include -I/usr/include/python3.11 -c python/pyslow5.c -o build/temp.linux-armv7l-cpython-311/python/pyslow5.o -g -Wall -O2 -std=c99 -DSLOW5_ENABLE_MT=1 -mfpu=neon 2024-06-25T14:09:50,944 In file included from /usr/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1929, 2024-06-25T14:09:50,945 from /usr/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, 2024-06-25T14:09:50,945 from /usr/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h:5, 2024-06-25T14:09:50,946 from python/pyslow5.c:1301: 2024-06-25T14:09:50,946 /usr/local/lib/python3.11/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 2024-06-25T14:09:50,947 17 | #warning "Using deprecated NumPy API, disable it with " \ 2024-06-25T14:09:50,948 | ^~~~~~~ 2024-06-25T14:12:27,336 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Iinclude/ -I/usr/local/lib/python3.11/dist-packages/numpy/core/include -Ithirdparty/streamvbyte/include -I/usr/include/python3.11 -c src/slow5.c -o build/temp.linux-armv7l-cpython-311/src/slow5.o -g -Wall -O2 -std=c99 -DSLOW5_ENABLE_MT=1 -mfpu=neon 2024-06-25T14:12:27,550 src/slow5.c: In function ‘slow5_init’: 2024-06-25T14:12:27,552 src/slow5.c:193:51: warning: comparison of integer expressions of different signedness: ‘uint64_t’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare] 2024-06-25T14:12:27,553 193 | if ((s5p->meta.start_rec_offset = ftello(fp)) == -1) { 2024-06-25T14:12:27,554 | ^~ 2024-06-25T14:12:27,556 src/slow5.c: In function ‘slow5_init_empty’: 2024-06-25T14:12:27,557 src/slow5.c:267:51: warning: comparison of integer expressions of different signedness: ‘uint64_t’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare] 2024-06-25T14:12:27,558 267 | if ((s5p->meta.start_rec_offset = ftello(fp)) == -1) { 2024-06-25T14:12:27,558 | ^~ 2024-06-25T14:12:27,577 In file included from src/slow5.c:44: 2024-06-25T14:12:27,578 src/slow5.c: In function ‘slow5_hdr_init’: 2024-06-25T14:12:27,579 src/slow5_byte.h:162:24: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘size_t’ {aka ‘unsigned int’} due to unsignedness of other operand [-Wsign-compare] 2024-06-25T14:12:27,580 162 | ( (slow5_bigend) ? (slow5_fread_bigend((ptr), (size), (nitems), (stream))) : (fread((ptr), (size), (nitems), (stream))) ) 2024-06-25T14:12:27,580 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-06-25T14:12:27,581 src/slow5.c:823:20: note: in expansion of macro ‘SLOW5_FREAD’ 2024-06-25T14:12:27,581 823 | } else if (SLOW5_FREAD(&header->num_read_groups, sizeof header->num_read_groups, 1, fp) != 1) { 2024-06-25T14:12:27,582 | ^~~~~~~~~~~ 2024-06-25T14:12:27,585 src/slow5_byte.h:162:24: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘size_t’ {aka ‘unsigned int’} due to unsignedness of other operand [-Wsign-compare] 2024-06-25T14:12:27,586 162 | ( (slow5_bigend) ? (slow5_fread_bigend((ptr), (size), (nitems), (stream))) : (fread((ptr), (size), (nitems), (stream))) ) 2024-06-25T14:12:27,586 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-06-25T14:12:27,587 src/slow5.c:834:20: note: in expansion of macro ‘SLOW5_FREAD’ 2024-06-25T14:12:27,587 834 | } else if (SLOW5_FREAD(&header_size, sizeof header_size, 1, fp) != 1) { 2024-06-25T14:12:27,588 | ^~~~~~~~~~~ 2024-06-25T14:12:27,637 src/slow5.c: In function ‘slow5_get_mem’: 2024-06-25T14:12:27,640 src/slow5.c:2467:49: warning: comparison of integer expressions of different signedness: ‘ssize_t’ {aka ‘int’} and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2024-06-25T14:12:27,640 2467 | if (pread(s5p->meta.fd, mem, bytes, offset) != bytes) { 2024-06-25T14:12:27,641 | ^~ 2024-06-25T14:12:27,644 In file included from include/slow5/slow5.h:55, 2024-06-25T14:12:27,644 from src/slow5.c:40: 2024-06-25T14:12:27,645 include/slow5/slow5_error.h:80:28: warning: format ‘%zu’ expects argument of type ‘size_t’, but argument 5 has type ‘off_t’ {aka ‘long int’} [-Wformat=] 2024-06-25T14:12:27,646 80 | #define SLOW5_ERROR_PREFIX "[%s::ERROR]\033[1;31m " 2024-06-25T14:12:27,646 | ^~~~~~~~~~~~~~~~~~~~~~~~ 2024-06-25T14:12:27,647 include/slow5/slow5_error.h:117:25: note: in expansion of macro ‘SLOW5_ERROR_PREFIX’ 2024-06-25T14:12:27,647 117 | fprintf(stderr, SLOW5_ERROR_PREFIX msg SLOW5_NO_COLOUR \ 2024-06-25T14:12:27,648 | ^~~~~~~~~~~~~~~~~~ 2024-06-25T14:12:27,649 src/slow5.c:2468:9: note: in expansion of macro ‘SLOW5_ERROR’ 2024-06-25T14:12:27,649 2468 | SLOW5_ERROR("Failed to pread '%zu' bytes at offset '%zu' from slow5 file '%s'.", 2024-06-25T14:12:27,650 | ^~~~~~~~~~~ 2024-06-25T14:12:27,670 src/slow5.c: In function ‘slow5_rec_aux_parse’: 2024-06-25T14:12:27,674 include/slow5/slow5_error.h:80:28: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 6 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 2024-06-25T14:12:27,674 80 | #define SLOW5_ERROR_PREFIX "[%s::ERROR]\033[1;31m " 2024-06-25T14:12:27,675 | ^~~~~~~~~~~~~~~~~~~~~~~~ 2024-06-25T14:12:27,675 include/slow5/slow5_error.h:117:25: note: in expansion of macro ‘SLOW5_ERROR_PREFIX’ 2024-06-25T14:12:27,676 117 | fprintf(stderr, SLOW5_ERROR_PREFIX msg SLOW5_NO_COLOUR \ 2024-06-25T14:12:27,676 | ^~~~~~~~~~~~~~~~~~ 2024-06-25T14:12:27,677 src/slow5.c:3094:17: note: in expansion of macro ‘SLOW5_ERROR’ 2024-06-25T14:12:27,677 3094 | SLOW5_ERROR("Auxiliary field '%s' is missing in record. At offset '%" PRIu64 "' and record size is '%" PRIu64 "'.", aux_meta->attrs[i], offset, read_size); 2024-06-25T14:12:27,678 | ^~~~~~~~~~~ 2024-06-25T14:12:27,682 src/slow5_byte.h:204:27: warning: comparison of integer expressions of different signedness: ‘int64_t’ {aka ‘long long int’} and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2024-06-25T14:12:27,683 204 | for(int64_t i=0; i<(nitems); i++){ \ 2024-06-25T14:12:27,683 | ^ 2024-06-25T14:12:27,684 src/slow5.c:3134:25: note: in expansion of macro ‘SLOW5_BYTE_SWAP_ARRAY_VOID’ 2024-06-25T14:12:27,684 3134 | SLOW5_BYTE_SWAP_ARRAY_VOID(data, 2, len); 2024-06-25T14:12:27,685 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-06-25T14:12:27,776 src/slow5.c: In function ‘slow5_rec_to_mem’: 2024-06-25T14:12:27,780 src/slow5_byte.h:204:27: warning: comparison of integer expressions of different signedness: ‘int64_t’ {aka ‘long long int’} and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2024-06-25T14:12:27,781 204 | for(int64_t i=0; i<(nitems); i++){ \ 2024-06-25T14:12:27,781 | ^ 2024-06-25T14:12:27,782 src/slow5.c:3989:66: note: in expansion of macro ‘SLOW5_BYTE_SWAP_ARRAY_VOID’ 2024-06-25T14:12:27,783 3989 | memcpy(mem + curr_len, read->raw_signal, bytes_raw_sig); SLOW5_BYTE_SWAP_ARRAY_VOID(mem + curr_len, sizeof *read->raw_signal, read->len_raw_signal); 2024-06-25T14:12:27,783 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-06-25T14:12:27,790 src/slow5_byte.h:204:27: warning: comparison of integer expressions of different signedness: ‘int64_t’ {aka ‘long long int’} and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2024-06-25T14:12:27,790 204 | for(int64_t i=0; i<(nitems); i++){ \ 2024-06-25T14:12:27,791 | ^ 2024-06-25T14:12:27,792 src/slow5.c:4032:29: note: in expansion of macro ‘SLOW5_BYTE_SWAP_ARRAY_VOID’ 2024-06-25T14:12:27,792 4032 | SLOW5_BYTE_SWAP_ARRAY_VOID(mem + curr_len, 2, aux_data.len); 2024-06-25T14:12:27,793 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-06-25T14:12:38,985 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Iinclude/ -I/usr/local/lib/python3.11/dist-packages/numpy/core/include -Ithirdparty/streamvbyte/include -I/usr/include/python3.11 -c src/slow5_idx.c -o build/temp.linux-armv7l-cpython-311/src/slow5_idx.o -g -Wall -O2 -std=c99 -DSLOW5_ENABLE_MT=1 -mfpu=neon 2024-06-25T14:12:39,188 src/slow5_idx.c: In function ‘slow5_idx_build’: 2024-06-25T14:12:39,189 src/slow5_idx.c:189:20: warning: comparison of integer expressions of different signedness: ‘uint64_t’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare] 2024-06-25T14:12:39,190 189 | if(curr_offset == -1){ 2024-06-25T14:12:39,191 | ^~ 2024-06-25T14:12:39,192 src/slow5_idx.c:216:19: warning: comparison of integer expressions of different signedness: ‘uint64_t’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare] 2024-06-25T14:12:39,193 216 | if(offset == -1){ 2024-06-25T14:12:39,194 | ^~ 2024-06-25T14:12:39,194 src/slow5_idx.c:242:23: warning: comparison of integer expressions of different signedness: ‘uint64_t’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare] 2024-06-25T14:12:39,195 242 | if(offset == -1){ 2024-06-25T14:12:39,195 | ^~ 2024-06-25T14:12:39,197 In file included from src/slow5_idx.c:9: 2024-06-25T14:12:39,198 src/slow5_idx.c: In function ‘slow5_idx_write’: 2024-06-25T14:12:39,199 src/slow5_byte.h:159:24: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘size_t’ {aka ‘unsigned int’} due to unsignedness of other operand [-Wsign-compare] 2024-06-25T14:12:39,199 159 | ( (slow5_bigend) ? (slow5_fwrite_bigend((ptr), (size), (nitems), (stream))) : (fwrite((ptr), (size), (nitems), (stream))) ) 2024-06-25T14:12:39,200 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-06-25T14:12:39,200 src/slow5_idx.c:395:13: note: in expansion of macro ‘SLOW5_FWRITE’ 2024-06-25T14:12:39,201 395 | if (SLOW5_FWRITE(&read_id_len, sizeof read_id_len, 1, index->fp) != 1){ 2024-06-25T14:12:39,201 | ^~~~~~~~~~~~ 2024-06-25T14:12:39,202 src/slow5_byte.h:159:24: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘size_t’ {aka ‘unsigned int’} due to unsignedness of other operand [-Wsign-compare] 2024-06-25T14:12:39,203 159 | ( (slow5_bigend) ? (slow5_fwrite_bigend((ptr), (size), (nitems), (stream))) : (fwrite((ptr), (size), (nitems), (stream))) ) 2024-06-25T14:12:39,203 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-06-25T14:12:39,204 src/slow5_idx.c:401:13: note: in expansion of macro ‘SLOW5_FWRITE’ 2024-06-25T14:12:39,205 401 | if (SLOW5_FWRITE(&read_index.offset, sizeof read_index.offset, 1, index->fp) != 1 ){ 2024-06-25T14:12:39,205 | ^~~~~~~~~~~~ 2024-06-25T14:12:39,206 src/slow5_byte.h:159:24: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘size_t’ {aka ‘unsigned int’} due to unsignedness of other operand [-Wsign-compare] 2024-06-25T14:12:39,207 159 | ( (slow5_bigend) ? (slow5_fwrite_bigend((ptr), (size), (nitems), (stream))) : (fwrite((ptr), (size), (nitems), (stream))) ) 2024-06-25T14:12:39,208 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-06-25T14:12:39,209 src/slow5_idx.c:404:13: note: in expansion of macro ‘SLOW5_FWRITE’ 2024-06-25T14:12:39,210 404 | if (SLOW5_FWRITE(&read_index.size, sizeof read_index.size, 1, index->fp) != 1) { 2024-06-25T14:12:39,211 | ^~~~~~~~~~~~ 2024-06-25T14:12:39,211 src/slow5_idx.c: In function ‘slow5_idx_read’: 2024-06-25T14:12:39,212 src/slow5_byte.h:162:24: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘size_t’ {aka ‘unsigned int’} due to unsignedness of other operand [-Wsign-compare] 2024-06-25T14:12:39,213 162 | ( (slow5_bigend) ? (slow5_fread_bigend((ptr), (size), (nitems), (stream))) : (fread((ptr), (size), (nitems), (stream))) ) 2024-06-25T14:12:39,213 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-06-25T14:12:39,214 src/slow5_idx.c:447:13: note: in expansion of macro ‘SLOW5_FREAD’ 2024-06-25T14:12:39,215 447 | if (SLOW5_FREAD(&read_id_len, sizeof read_id_len, 1, index->fp) != 1) { 2024-06-25T14:12:39,215 | ^~~~~~~~~~~ 2024-06-25T14:12:39,216 src/slow5_byte.h:162:24: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘size_t’ {aka ‘unsigned int’} due to unsignedness of other operand [-Wsign-compare] 2024-06-25T14:12:39,217 162 | ( (slow5_bigend) ? (slow5_fread_bigend((ptr), (size), (nitems), (stream))) : (fread((ptr), (size), (nitems), (stream))) ) 2024-06-25T14:12:39,218 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-06-25T14:12:39,218 src/slow5_idx.c:485:13: note: in expansion of macro ‘SLOW5_FREAD’ 2024-06-25T14:12:39,219 485 | if (SLOW5_FREAD(&offset, sizeof offset, 1, index->fp) != 1 || 2024-06-25T14:12:39,220 | ^~~~~~~~~~~ 2024-06-25T14:12:39,220 src/slow5_byte.h:162:24: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘size_t’ {aka ‘unsigned int’} due to unsignedness of other operand [-Wsign-compare] 2024-06-25T14:12:39,221 162 | ( (slow5_bigend) ? (slow5_fread_bigend((ptr), (size), (nitems), (stream))) : (fread((ptr), (size), (nitems), (stream))) ) 2024-06-25T14:12:39,221 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-06-25T14:12:39,222 src/slow5_idx.c:486:17: note: in expansion of macro ‘SLOW5_FREAD’ 2024-06-25T14:12:39,222 486 | SLOW5_FREAD(&size, sizeof size, 1, index->fp) != 1) { 2024-06-25T14:12:39,223 | ^~~~~~~~~~~ 2024-06-25T14:12:40,383 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Iinclude/ -I/usr/local/lib/python3.11/dist-packages/numpy/core/include -Ithirdparty/streamvbyte/include -I/usr/include/python3.11 -c src/slow5_misc.c -o build/temp.linux-armv7l-cpython-311/src/slow5_misc.o -g -Wall -O2 -std=c99 -DSLOW5_ENABLE_MT=1 -mfpu=neon 2024-06-25T14:12:40,893 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Iinclude/ -I/usr/local/lib/python3.11/dist-packages/numpy/core/include -Ithirdparty/streamvbyte/include -I/usr/include/python3.11 -c src/slow5_mt.c -o build/temp.linux-armv7l-cpython-311/src/slow5_mt.o -g -Wall -O2 -std=c99 -DSLOW5_ENABLE_MT=1 -mfpu=neon 2024-06-25T14:12:41,638 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Iinclude/ -I/usr/local/lib/python3.11/dist-packages/numpy/core/include -Ithirdparty/streamvbyte/include -I/usr/include/python3.11 -c src/slow5_press.c -o build/temp.linux-armv7l-cpython-311/src/slow5_press.o -g -Wall -O2 -std=c99 -DSLOW5_ENABLE_MT=1 -mfpu=neon 2024-06-25T14:12:41,836 src/slow5_press.c: In function ‘slow5_fwrite_compress’: 2024-06-25T14:12:41,838 src/slow5_press.c:559:27: warning: comparison of integer expressions of different signedness: ‘ssize_t’ {aka ‘int’} and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2024-06-25T14:12:41,838 559 | if (bytes != size * nmemb || ferror(fp)) { 2024-06-25T14:12:41,839 | ^~ 2024-06-25T14:12:41,840 src/slow5_press.c:560:31: warning: comparison of integer expressions of different signedness: ‘ssize_t’ {aka ‘int’} and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2024-06-25T14:12:41,840 560 | if (bytes != size * nmemb) { 2024-06-25T14:12:41,841 | ^~ 2024-06-25T14:12:41,844 src/slow5_press.c: In function ‘slow5_pread_depress_solo’: 2024-06-25T14:12:41,844 src/slow5_press.c:687:47: warning: comparison of integer expressions of different signedness: ‘ssize_t’ {aka ‘int’} and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2024-06-25T14:12:41,845 687 | if ((ret = pread(fd, raw, count, offset)) != count) { 2024-06-25T14:12:41,846 | ^~ 2024-06-25T14:12:42,926 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Iinclude/ -I/usr/local/lib/python3.11/dist-packages/numpy/core/include -Ithirdparty/streamvbyte/include -I/usr/include/python3.11 -c thirdparty/streamvbyte/src/streamvbyte_decode.c -o build/temp.linux-armv7l-cpython-311/thirdparty/streamvbyte/src/streamvbyte_decode.o -g -Wall -O2 -std=c99 -DSLOW5_ENABLE_MT=1 -mfpu=neon 2024-06-25T14:12:43,536 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Iinclude/ -I/usr/local/lib/python3.11/dist-packages/numpy/core/include -Ithirdparty/streamvbyte/include -I/usr/include/python3.11 -c thirdparty/streamvbyte/src/streamvbyte_encode.c -o build/temp.linux-armv7l-cpython-311/thirdparty/streamvbyte/src/streamvbyte_encode.o -g -Wall -O2 -std=c99 -DSLOW5_ENABLE_MT=1 -mfpu=neon 2024-06-25T14:12:44,115 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Iinclude/ -I/usr/local/lib/python3.11/dist-packages/numpy/core/include -Ithirdparty/streamvbyte/include -I/usr/include/python3.11 -c thirdparty/streamvbyte/src/streamvbyte_zigzag.c -o build/temp.linux-armv7l-cpython-311/thirdparty/streamvbyte/src/streamvbyte_zigzag.o -g -Wall -O2 -std=c99 -DSLOW5_ENABLE_MT=1 -mfpu=neon 2024-06-25T14:12:44,270 creating build/lib.linux-armv7l-cpython-311 2024-06-25T14:12:44,271 arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/python/pyslow5.o build/temp.linux-armv7l-cpython-311/src/slow5.o build/temp.linux-armv7l-cpython-311/src/slow5_idx.o build/temp.linux-armv7l-cpython-311/src/slow5_misc.o build/temp.linux-armv7l-cpython-311/src/slow5_mt.o build/temp.linux-armv7l-cpython-311/src/slow5_press.o build/temp.linux-armv7l-cpython-311/thirdparty/streamvbyte/src/streamvbyte_decode.o build/temp.linux-armv7l-cpython-311/thirdparty/streamvbyte/src/streamvbyte_encode.o build/temp.linux-armv7l-cpython-311/thirdparty/streamvbyte/src/streamvbyte_zigzag.o -L. -L/usr/lib/arm-linux-gnueabihf -lm -lz -o build/lib.linux-armv7l-cpython-311/pyslow5.cpython-311-arm-linux-gnueabihf.so 2024-06-25T14:12:44,613 /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. 2024-06-25T14:12:44,613 !! 2024-06-25T14:12:44,615 ******************************************************************************** 2024-06-25T14:12:44,615 Please avoid running ``setup.py`` directly. 2024-06-25T14:12:44,616 Instead, use pypa/build, pypa/installer or other 2024-06-25T14:12:44,616 standards-based tools. 2024-06-25T14:12:44,617 See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. 2024-06-25T14:12:44,618 ******************************************************************************** 2024-06-25T14:12:44,619 !! 2024-06-25T14:12:44,619 self.initialize_options() 2024-06-25T14:12:44,641 installing to build/bdist.linux-armv7l/wheel 2024-06-25T14:12:44,642 running install 2024-06-25T14:12:44,666 running install_lib 2024-06-25T14:12:44,693 creating build/bdist.linux-armv7l 2024-06-25T14:12:44,694 creating build/bdist.linux-armv7l/wheel 2024-06-25T14:12:44,695 copying build/lib.linux-armv7l-cpython-311/pyslow5.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel 2024-06-25T14:12:44,756 running install_egg_info 2024-06-25T14:12:44,796 running egg_info 2024-06-25T14:12:44,832 writing pyslow5.egg-info/PKG-INFO 2024-06-25T14:12:44,837 writing dependency_links to pyslow5.egg-info/dependency_links.txt 2024-06-25T14:12:44,839 writing requirements to pyslow5.egg-info/requires.txt 2024-06-25T14:12:44,841 writing top-level names to pyslow5.egg-info/top_level.txt 2024-06-25T14:12:44,875 reading manifest file 'pyslow5.egg-info/SOURCES.txt' 2024-06-25T14:12:44,891 reading manifest template 'MANIFEST.in' 2024-06-25T14:12:44,906 writing manifest file 'pyslow5.egg-info/SOURCES.txt' 2024-06-25T14:12:44,908 Copying pyslow5.egg-info to build/bdist.linux-armv7l/wheel/pyslow5-1.2.0-py3.11.egg-info 2024-06-25T14:12:44,919 running install_scripts 2024-06-25T14:12:44,975 creating build/bdist.linux-armv7l/wheel/pyslow5-1.2.0.dist-info/WHEEL 2024-06-25T14:12:44,978 creating '/tmp/pip-wheel-h5hgqnfv/pyslow5-1.2.0-cp311-cp311-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2024-06-25T14:12:45,828 adding 'pyslow5.cpython-311-arm-linux-gnueabihf.so' 2024-06-25T14:12:45,858 adding 'pyslow5-1.2.0.dist-info/METADATA' 2024-06-25T14:12:45,859 adding 'pyslow5-1.2.0.dist-info/WHEEL' 2024-06-25T14:12:45,860 adding 'pyslow5-1.2.0.dist-info/top_level.txt' 2024-06-25T14:12:45,861 adding 'pyslow5-1.2.0.dist-info/RECORD' 2024-06-25T14:12:45,882 removing build/bdist.linux-armv7l/wheel 2024-06-25T14:12:46,073 Building wheel for pyslow5 (setup.py): finished with status 'done' 2024-06-25T14:12:46,094 Created wheel for pyslow5: filename=pyslow5-1.2.0-cp311-cp311-linux_armv7l.whl size=1788053 sha256=916298ef4dbf33cc8515c4ce09bacfd532f820c06e11b16859d88600c01fe418 2024-06-25T14:12:46,095 Stored in directory: /tmp/pip-ephem-wheel-cache-huzq7ee8/wheels/d6/d1/f0/d460e3e7f66dc3defeb948173717f70a74e2fb265a31b76cb7 2024-06-25T14:12:46,109 Successfully built pyslow5 2024-06-25T14:12:46,167 Removed build tracker: '/tmp/pip-build-tracker-7qt2b_8h'