2024-06-26T02:57:34,568 Created temporary directory: /tmp/pip-build-tracker-1gn0g4zl
2024-06-26T02:57:34,569 Initialized build tracking at /tmp/pip-build-tracker-1gn0g4zl
2024-06-26T02:57:34,570 Created build tracker: /tmp/pip-build-tracker-1gn0g4zl
2024-06-26T02:57:34,570 Entered build tracker: /tmp/pip-build-tracker-1gn0g4zl
2024-06-26T02:57:34,570 Created temporary directory: /tmp/pip-wheel-qxb8iuoq
2024-06-26T02:57:34,575 Created temporary directory: /tmp/pip-ephem-wheel-cache-69q5cyiy
2024-06-26T02:57:34,601 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2024-06-26T02:57:34,605 2 location(s) to search for versions of cryodrgn:
2024-06-26T02:57:34,605 * https://pypi.org/simple/cryodrgn/
2024-06-26T02:57:34,605 * https://www.piwheels.org/simple/cryodrgn/
2024-06-26T02:57:34,605 Fetching project page and analyzing links: https://pypi.org/simple/cryodrgn/
2024-06-26T02:57:34,606 Getting page https://pypi.org/simple/cryodrgn/
2024-06-26T02:57:34,607 Found index url https://pypi.org/simple/
2024-06-26T02:57:34,660 Fetched page https://pypi.org/simple/cryodrgn/ as application/vnd.pypi.simple.v1+json
2024-06-26T02:57:34,667   Skipping link: No binaries permitted for cryodrgn: https://files.pythonhosted.org/packages/8a/25/80e82244484accc834ed1099716c35b78cc322e2270f9a3558ff5898ebbb/cryodrgn-0.20.0-py3-none-any.whl (from https://pypi.org/simple/cryodrgn/) (requires-python:<3.11,>=3.9)
2024-06-26T02:57:34,668   Found link https://files.pythonhosted.org/packages/23/84/71a084cba49c7d679bd4d7d1e53a3ca89972b787b89446d726c38bcc74a0/cryodrgn-0.20.0.tar.gz (from https://pypi.org/simple/cryodrgn/) (requires-python:<3.11,>=3.9), version: 0.20.0
2024-06-26T02:57:34,668   Skipping link: No binaries permitted for cryodrgn: https://files.pythonhosted.org/packages/50/91/1306b78002812cfa9932e2691070f765b75d4385e4bbf559d211a4e71025/cryodrgn-1.1.1-py3-none-any.whl (from https://pypi.org/simple/cryodrgn/) (requires-python:>=3.7)
2024-06-26T02:57:34,669   Found link https://files.pythonhosted.org/packages/24/08/8de601e5f4fe8a5177c4191c0be1848d2952dad0ef149820aadadbee2e08/cryodrgn-1.1.1.tar.gz (from https://pypi.org/simple/cryodrgn/) (requires-python:>=3.7), version: 1.1.1
2024-06-26T02:57:34,669   Skipping link: No binaries permitted for cryodrgn: https://files.pythonhosted.org/packages/e9/78/bdf1fd8d9394a0025206a4d1478b21170d7392e35132522c5ef87855fe73/cryodrgn-2.1.0b5-py3-none-any.whl (from https://pypi.org/simple/cryodrgn/) (requires-python:>=3.7)
2024-06-26T02:57:34,670   Found link https://files.pythonhosted.org/packages/68/26/6669e39abe77e36bd49d1f21f68ed04961bdd0a76f909b497c96ce78b60b/cryodrgn-2.1.0b5.tar.gz (from https://pypi.org/simple/cryodrgn/) (requires-python:>=3.7), version: 2.1.0b5
2024-06-26T02:57:34,670   Skipping link: No binaries permitted for cryodrgn: https://files.pythonhosted.org/packages/7d/d8/dae369c30a1b908f5713f7b46f4948aed0253f9e7e124c98e6c7b15d7e57/cryodrgn-2.2.0b0-py3-none-any.whl (from https://pypi.org/simple/cryodrgn/) (requires-python:>=3.7)
2024-06-26T02:57:34,671   Found link https://files.pythonhosted.org/packages/6f/19/b950e5eb7a6d3c8d122bec56e59c447d3585a660a7605112a5346816014e/cryodrgn-2.2.0b0.tar.gz (from https://pypi.org/simple/cryodrgn/) (requires-python:>=3.7), version: 2.2.0b0
2024-06-26T02:57:34,671   Skipping link: No binaries permitted for cryodrgn: https://files.pythonhosted.org/packages/6d/79/97a3f0118ef0c156bf5eaf931f4a5855a5c5d27dedd04aaa0bcf57fe1f7c/cryodrgn-2.2.0-py3-none-any.whl (from https://pypi.org/simple/cryodrgn/) (requires-python:>=3.7)
2024-06-26T02:57:34,672   Found link https://files.pythonhosted.org/packages/03/50/3259e1a4efc92c945d1ae88fd5765a0ba4db77f0a742fc0e0a206cd781ac/cryodrgn-2.2.0.tar.gz (from https://pypi.org/simple/cryodrgn/) (requires-python:>=3.7), version: 2.2.0
2024-06-26T02:57:34,672   Skipping link: No binaries permitted for cryodrgn: https://files.pythonhosted.org/packages/03/29/f9750c89414937c8700d9d5aa167d9ed1e3157ebb6a9971effb4bcbe8bec/cryodrgn-2.3.0-py3-none-any.whl (from https://pypi.org/simple/cryodrgn/) (requires-python:>=3.7)
2024-06-26T02:57:34,672   Found link https://files.pythonhosted.org/packages/d2/69/c5d8c6da2da86575a985307f67f214a0f56a7f79d73492a5184170ea7036/cryodrgn-2.3.0.tar.gz (from https://pypi.org/simple/cryodrgn/) (requires-python:>=3.7), version: 2.3.0
2024-06-26T02:57:34,673   Skipping link: No binaries permitted for cryodrgn: https://files.pythonhosted.org/packages/08/8d/d0ff2954b5825e3b771a943b40423d57195aec5c30d4b770250ac822c7fe/cryodrgn-3.0.0b0-py3-none-any.whl (from https://pypi.org/simple/cryodrgn/) (requires-python:>=3.7)
2024-06-26T02:57:34,673   Found link https://files.pythonhosted.org/packages/74/92/6ca0ee245ed52438a0f471cfb29de766b9822010f760da08875be946e827/cryodrgn-3.0.0b0.tar.gz (from https://pypi.org/simple/cryodrgn/) (requires-python:>=3.7), version: 3.0.0b0
2024-06-26T02:57:34,673   Skipping link: No binaries permitted for cryodrgn: https://files.pythonhosted.org/packages/ec/e4/6ed8adf3e7b526a69e850b7e5d1b7f6fceede2b3683b35c81944321149a7/cryodrgn-3.0.1b0-py3-none-any.whl (from https://pypi.org/simple/cryodrgn/) (requires-python:>=3.7)
2024-06-26T02:57:34,674   Found link https://files.pythonhosted.org/packages/9d/05/4215fddb0e1cce3525690435efa36cef19ad50c1808b1d48771ea3b7ff37/cryodrgn-3.0.1b0.tar.gz (from https://pypi.org/simple/cryodrgn/) (requires-python:>=3.7), version: 3.0.1b0
2024-06-26T02:57:34,674   Skipping link: No binaries permitted for cryodrgn: https://files.pythonhosted.org/packages/f4/5b/054660b4368ce3eaf45f8301c941cf2e5ee0ba92b1f76dd1503c64d9d156/cryodrgn-3.1.0b0-py3-none-any.whl (from https://pypi.org/simple/cryodrgn/) (requires-python:>=3.7)
2024-06-26T02:57:34,675   Found link https://files.pythonhosted.org/packages/fa/81/02d79980623ec3e72fe0a381ab2953b96b71bcd81937ff54943dd2c85054/cryodrgn-3.1.0b0.tar.gz (from https://pypi.org/simple/cryodrgn/) (requires-python:>=3.7), version: 3.1.0b0
2024-06-26T02:57:34,675   Skipping link: No binaries permitted for cryodrgn: https://files.pythonhosted.org/packages/7b/90/4d4442c4ef959de675c6815995a483c1da8c840ce73da4a2208463548db7/cryodrgn-3.2.0a0-py3-none-any.whl (from https://pypi.org/simple/cryodrgn/) (requires-python:<3.11,>=3.7)
2024-06-26T02:57:34,676   Found link https://files.pythonhosted.org/packages/f2/8b/00d75ab0c8fb63f1bf59c2322d38b3e63c79882cfc9071792af0800b9c8c/cryodrgn-3.2.0a0.tar.gz (from https://pypi.org/simple/cryodrgn/) (requires-python:<3.11,>=3.7), version: 3.2.0a0
2024-06-26T02:57:34,676   Skipping link: No binaries permitted for cryodrgn: https://files.pythonhosted.org/packages/06/24/d655857f07fcb5600f36cec129e365e86492b0a97de029b99f3d83615f5d/cryodrgn-3.2.0a1-py3-none-any.whl (from https://pypi.org/simple/cryodrgn/) (requires-python:<3.11,>=3.7)
2024-06-26T02:57:34,676   Found link https://files.pythonhosted.org/packages/3d/7e/6f69becd5004ad87380939fd7438a730a9a723a76012e918731f58e8355c/cryodrgn-3.2.0a1.tar.gz (from https://pypi.org/simple/cryodrgn/) (requires-python:<3.11,>=3.7), version: 3.2.0a1
2024-06-26T02:57:34,677   Skipping link: No binaries permitted for cryodrgn: https://files.pythonhosted.org/packages/f6/33/67c3f1227b7798d9cade4a14dd8a16aaa0d537531f6e41d9d11b30c2895c/cryodrgn-3.2.0b0-py3-none-any.whl (from https://pypi.org/simple/cryodrgn/) (requires-python:<3.11,>=3.7)
2024-06-26T02:57:34,677   Found link https://files.pythonhosted.org/packages/d8/29/f6b3a3cb3463d56218319de48999e2cc281499e3afa8505f495ac1d4c201/cryodrgn-3.2.0b0.tar.gz (from https://pypi.org/simple/cryodrgn/) (requires-python:<3.11,>=3.7), version: 3.2.0b0
2024-06-26T02:57:34,678   Skipping link: No binaries permitted for cryodrgn: https://files.pythonhosted.org/packages/8c/8b/d004a4dc6b3825ee4a87d39d1045b34796bbcbbc54bbe5b482f65bac1f6c/cryodrgn-3.3.0-py3-none-any.whl (from https://pypi.org/simple/cryodrgn/) (requires-python:<3.11,>=3.9)
2024-06-26T02:57:34,678   Found link https://files.pythonhosted.org/packages/8c/10/8dd0c198e9d986f1e36223c0238383b7ca634ad291169161d9837f811507/cryodrgn-3.3.0.tar.gz (from https://pypi.org/simple/cryodrgn/) (requires-python:<3.11,>=3.9), version: 3.3.0
2024-06-26T02:57:34,679   Skipping link: No binaries permitted for cryodrgn: https://files.pythonhosted.org/packages/18/25/05730115709d6be465fbf4244c80bcaa30358b2d5ddaa5f513f12d324db0/cryodrgn-3.3.1-py3-none-any.whl (from https://pypi.org/simple/cryodrgn/) (requires-python:<3.11,>=3.9)
2024-06-26T02:57:34,679   Found link https://files.pythonhosted.org/packages/18/9a/1d5ddedf2a40765bf9050569ae86865b7567931278e33118f3780f3efaf3/cryodrgn-3.3.1.tar.gz (from https://pypi.org/simple/cryodrgn/) (requires-python:<3.11,>=3.9), version: 3.3.1
2024-06-26T02:57:34,679   Skipping link: No binaries permitted for cryodrgn: https://files.pythonhosted.org/packages/b5/2c/2ef709c868eaf191cdcfc576ed776fd6952caf17c0b7a1f4da9a6172e080/cryodrgn-3.3.2-py3-none-any.whl (from https://pypi.org/simple/cryodrgn/) (requires-python:<3.11,>=3.9)
2024-06-26T02:57:34,680   Found link https://files.pythonhosted.org/packages/9d/2e/c28a1a35d81debabe063199e4c8127cdf08123221ee850730ac630d25130/cryodrgn-3.3.2.tar.gz (from https://pypi.org/simple/cryodrgn/) (requires-python:<3.11,>=3.9), version: 3.3.2
2024-06-26T02:57:34,680   Skipping link: No binaries permitted for cryodrgn: https://files.pythonhosted.org/packages/8a/dc/e782c565cea6ff490e6b44bddd86dd8763c2c3798501251084625470285a/cryodrgn-3.3.3-py3-none-any.whl (from https://pypi.org/simple/cryodrgn/) (requires-python:<3.11,>=3.9)
2024-06-26T02:57:34,681   Found link https://files.pythonhosted.org/packages/11/ae/9f1af7e2625233c381528c0d35f97d3155ce103983c9d4afcb275eb56924/cryodrgn-3.3.3.tar.gz (from https://pypi.org/simple/cryodrgn/) (requires-python:<3.11,>=3.9), version: 3.3.3
2024-06-26T02:57:34,681 Fetching project page and analyzing links: https://www.piwheels.org/simple/cryodrgn/
2024-06-26T02:57:34,682 Getting page https://www.piwheels.org/simple/cryodrgn/
2024-06-26T02:57:34,683 Found index url https://www.piwheels.org/simple/
2024-06-26T02:57:34,748 Fetched page https://www.piwheels.org/simple/cryodrgn/ as text/html
2024-06-26T02:57:34,753   Skipping link: No binaries permitted for cryodrgn: https://www.piwheels.org/simple/cryodrgn/cryodrgn-3.3.2-py3-none-any.whl#sha256=23d9324f04d89f7f6e7fcbfc4a4c90a979798fd294a840d8b07c919f6aef1817 (from https://www.piwheels.org/simple/cryodrgn/) (requires-python:<3.11,>=3.9)
2024-06-26T02:57:34,754   Skipping link: No binaries permitted for cryodrgn: https://www.piwheels.org/simple/cryodrgn/cryodrgn-3.3.1-py3-none-any.whl#sha256=647299cf3549465b1c2b7296e0c48b83e6208d693322dabfa10b5918d4f09358 (from https://www.piwheels.org/simple/cryodrgn/) (requires-python:<3.11,>=3.9)
2024-06-26T02:57:34,754   Skipping link: No binaries permitted for cryodrgn: https://www.piwheels.org/simple/cryodrgn/cryodrgn-3.3.0-py3-none-any.whl#sha256=8aae2a2c492aa891d21c236a7fbf48e454224d80748853e92d58f624f2bee91a (from https://www.piwheels.org/simple/cryodrgn/) (requires-python:<3.11,>=3.9)
2024-06-26T02:57:34,754   Skipping link: No binaries permitted for cryodrgn: https://www.piwheels.org/simple/cryodrgn/cryodrgn-3.2.0b0-py3-none-any.whl#sha256=9be035b539a141bdf9a3a5e223ab2d5eac88e2e8342e4fbdf2aa106b91dd220b (from https://www.piwheels.org/simple/cryodrgn/) (requires-python:<3.11,>=3.7)
2024-06-26T02:57:34,754   Skipping link: No binaries permitted for cryodrgn: https://www.piwheels.org/simple/cryodrgn/cryodrgn-3.2.0a1-py3-none-any.whl#sha256=a23e8245ce860c4122cef6f81db6fe3918ab253dab52b10afd0e4f65d9428b3e (from https://www.piwheels.org/simple/cryodrgn/) (requires-python:<3.11,>=3.7)
2024-06-26T02:57:34,754   Skipping link: No binaries permitted for cryodrgn: https://www.piwheels.org/simple/cryodrgn/cryodrgn-3.2.0a0-py3-none-any.whl#sha256=ea2d2f810968f04912365abdce1cf74f011e1b5be2b671a741a705ef827f2d4a (from https://www.piwheels.org/simple/cryodrgn/) (requires-python:<3.11,>=3.7)
2024-06-26T02:57:34,755   Skipping link: No binaries permitted for cryodrgn: https://www.piwheels.org/simple/cryodrgn/cryodrgn-3.1.0b0-py3-none-any.whl#sha256=929d0ff6af693745b3d438a6e7462cc2845e60d49457cd383b6b17b01778017c (from https://www.piwheels.org/simple/cryodrgn/) (requires-python:>=3.7)
2024-06-26T02:57:34,755   Skipping link: No binaries permitted for cryodrgn: https://www.piwheels.org/simple/cryodrgn/cryodrgn-3.0.1b0-py3-none-any.whl#sha256=c5aa67408ca576f776a9b8a331b966eb87343cb2d3713e29768705555e85f930 (from https://www.piwheels.org/simple/cryodrgn/) (requires-python:>=3.7)
2024-06-26T02:57:34,755   Skipping link: No binaries permitted for cryodrgn: https://www.piwheels.org/simple/cryodrgn/cryodrgn-3.0.0b0-py3-none-any.whl#sha256=498fba8644092d42d124e88b81d7209e358d25ea05720b664bd44c454eb221a2 (from https://www.piwheels.org/simple/cryodrgn/) (requires-python:>=3.7)
2024-06-26T02:57:34,755   Skipping link: No binaries permitted for cryodrgn: https://www.piwheels.org/simple/cryodrgn/cryodrgn-2.3.0-py3-none-any.whl#sha256=d3f519ed4819eac7456ccee2c974e41070b80d0e895797cf940ea8b8ca729631 (from https://www.piwheels.org/simple/cryodrgn/) (requires-python:>=3.7)
2024-06-26T02:57:34,755   Skipping link: No binaries permitted for cryodrgn: https://www.piwheels.org/simple/cryodrgn/cryodrgn-2.2.0-py3-none-any.whl#sha256=6d705695a229d236db29c0b847f18e336bc53358ef3bc125cb158bd743f53bc9 (from https://www.piwheels.org/simple/cryodrgn/) (requires-python:>=3.7)
2024-06-26T02:57:34,756   Skipping link: No binaries permitted for cryodrgn: https://www.piwheels.org/simple/cryodrgn/cryodrgn-2.2.0b0-py3-none-any.whl#sha256=ded8ccf2e343961488fc50ee73479e8c5a9bc61dd79a83f509f96e86c01e9306 (from https://www.piwheels.org/simple/cryodrgn/) (requires-python:>=3.7)
2024-06-26T02:57:34,756   Skipping link: No binaries permitted for cryodrgn: https://www.piwheels.org/simple/cryodrgn/cryodrgn-2.1.0b5-py3-none-any.whl#sha256=f43221397e48ac64c02c3009e927ea1212a8ad59ed1e20421a65287c9e853652 (from https://www.piwheels.org/simple/cryodrgn/) (requires-python:>=3.7)
2024-06-26T02:57:34,756   Skipping link: No binaries permitted for cryodrgn: https://www.piwheels.org/simple/cryodrgn/cryodrgn-1.1.1-py3-none-any.whl#sha256=b3cc3928fe1cc0f347265449cd329a61f3b7eadb9f833c26748b681c220cb4ad (from https://www.piwheels.org/simple/cryodrgn/) (requires-python:>=3.7)
2024-06-26T02:57:34,756   Skipping link: No binaries permitted for cryodrgn: https://www.piwheels.org/simple/cryodrgn/cryodrgn-0.20.0-py3-none-any.whl#sha256=717a2f51d76e34a261789323999467e1716afd1588ee2b5ab9784100649a0453 (from https://www.piwheels.org/simple/cryodrgn/) (requires-python:<3.11,>=3.9)
2024-06-26T02:57:34,756 Skipping link: not a file: https://www.piwheels.org/simple/cryodrgn/
2024-06-26T02:57:34,757 Skipping link: not a file: https://pypi.org/simple/cryodrgn/
2024-06-26T02:57:34,774 Given no hashes to check 1 links for project 'cryodrgn': discarding no candidates
2024-06-26T02:57:34,790 Collecting cryodrgn==3.3.3
2024-06-26T02:57:34,792   Created temporary directory: /tmp/pip-unpack-v2k62suk
2024-06-26T02:57:34,918   Downloading cryodrgn-3.3.3.tar.gz (37.5 MB)
2024-06-26T02:57:45,399   Added cryodrgn==3.3.3 from https://files.pythonhosted.org/packages/11/ae/9f1af7e2625233c381528c0d35f97d3155ce103983c9d4afcb275eb56924/cryodrgn-3.3.3.tar.gz to build tracker '/tmp/pip-build-tracker-1gn0g4zl'
2024-06-26T02:57:45,407   Created temporary directory: /tmp/pip-build-env-scv9pmgo
2024-06-26T02:57:45,421   Installing build dependencies: started
2024-06-26T02:57:45,422   Running command pip subprocess to install build dependencies
2024-06-26T02:57:46,628   Using pip 24.0 from /usr/local/lib/python3.9/dist-packages/pip (python 3.9)
2024-06-26T02:57:47,143   Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2024-06-26T02:57:48,575   Collecting setuptools>=61.0
2024-06-26T02:57:48,591     Using cached https://www.piwheels.org/simple/setuptools/setuptools-70.1.1-py3-none-any.whl (883 kB)
2024-06-26T02:57:48,930   Collecting setuptools_scm>=6.2
2024-06-26T02:57:48,947     Using cached https://www.piwheels.org/simple/setuptools-scm/setuptools_scm-8.1.0-py3-none-any.whl (43 kB)
2024-06-26T02:57:49,320   Collecting packaging>=20 (from setuptools_scm>=6.2)
2024-06-26T02:57:49,340     Using cached https://www.piwheels.org/simple/packaging/packaging-24.1-py3-none-any.whl (53 kB)
2024-06-26T02:57:49,483   Collecting typing-extensions (from setuptools_scm>=6.2)
2024-06-26T02:57:49,504     Using cached https://www.piwheels.org/simple/typing-extensions/typing_extensions-4.12.2-py3-none-any.whl (37 kB)
2024-06-26T02:57:49,616   Collecting tomli>=1 (from setuptools_scm>=6.2)
2024-06-26T02:57:49,632     Using cached https://www.piwheels.org/simple/tomli/tomli-2.0.1-py3-none-any.whl (12 kB)
2024-06-26T02:57:51,303   Installing collected packages: typing-extensions, tomli, setuptools, packaging, setuptools_scm
2024-06-26T02:57:54,072   Successfully installed packaging-24.1 setuptools-70.1.1 setuptools_scm-8.1.0 tomli-2.0.1 typing-extensions-4.12.2

2024-06-26T02:57:54,251   [notice] A new release of pip is available: 24.0 -> 24.1
2024-06-26T02:57:54,252   [notice] To update, run: python3 -m pip install --upgrade pip
2024-06-26T02:57:54,540   Installing build dependencies: finished with status 'done'
2024-06-26T02:57:54,549   Getting requirements to build wheel: started
2024-06-26T02:57:54,550   Running command Getting requirements to build wheel
2024-06-26T02:57:55,456   running egg_info
2024-06-26T02:57:55,461   writing cryodrgn.egg-info/PKG-INFO
2024-06-26T02:57:55,470   writing dependency_links to cryodrgn.egg-info/dependency_links.txt
2024-06-26T02:57:55,472   writing entry points to cryodrgn.egg-info/entry_points.txt
2024-06-26T02:57:55,476   writing requirements to cryodrgn.egg-info/requires.txt
2024-06-26T02:57:55,478   writing top-level names to cryodrgn.egg-info/top_level.txt
2024-06-26T02:57:55,584   ERROR setuptools_scm._file_finders.git listing git files failed - pretending there aren't any
2024-06-26T02:57:55,593   reading manifest file 'cryodrgn.egg-info/SOURCES.txt'
2024-06-26T02:57:55,602   reading manifest template 'MANIFEST.in'
2024-06-26T02:57:55,604   adding license file 'LICENSE.txt'
2024-06-26T02:57:55,617   writing manifest file 'cryodrgn.egg-info/SOURCES.txt'
2024-06-26T02:57:55,728   Getting requirements to build wheel: finished with status 'done'
2024-06-26T02:57:55,732   Created temporary directory: /tmp/pip-modern-metadata-c9elp44i
2024-06-26T02:57:55,735   Preparing metadata (pyproject.toml): started
2024-06-26T02:57:55,736   Running command Preparing metadata (pyproject.toml)
2024-06-26T02:57:56,588   running dist_info
2024-06-26T02:57:56,594   creating /tmp/pip-modern-metadata-c9elp44i/cryodrgn.egg-info
2024-06-26T02:57:56,600   writing /tmp/pip-modern-metadata-c9elp44i/cryodrgn.egg-info/PKG-INFO
2024-06-26T02:57:56,609   writing dependency_links to /tmp/pip-modern-metadata-c9elp44i/cryodrgn.egg-info/dependency_links.txt
2024-06-26T02:57:56,611   writing entry points to /tmp/pip-modern-metadata-c9elp44i/cryodrgn.egg-info/entry_points.txt
2024-06-26T02:57:56,615   writing requirements to /tmp/pip-modern-metadata-c9elp44i/cryodrgn.egg-info/requires.txt
2024-06-26T02:57:56,616   writing top-level names to /tmp/pip-modern-metadata-c9elp44i/cryodrgn.egg-info/top_level.txt
2024-06-26T02:57:56,617   writing manifest file '/tmp/pip-modern-metadata-c9elp44i/cryodrgn.egg-info/SOURCES.txt'
2024-06-26T02:57:56,663   ERROR setuptools_scm._file_finders.git listing git files failed - pretending there aren't any
2024-06-26T02:57:56,672   reading manifest file '/tmp/pip-modern-metadata-c9elp44i/cryodrgn.egg-info/SOURCES.txt'
2024-06-26T02:57:56,675   reading manifest template 'MANIFEST.in'
2024-06-26T02:57:56,676   adding license file 'LICENSE.txt'
2024-06-26T02:57:56,682   writing manifest file '/tmp/pip-modern-metadata-c9elp44i/cryodrgn.egg-info/SOURCES.txt'
2024-06-26T02:57:56,683   creating '/tmp/pip-modern-metadata-c9elp44i/cryodrgn-3.3.3.dist-info'
2024-06-26T02:57:56,841   Preparing metadata (pyproject.toml): finished with status 'done'
2024-06-26T02:57:56,849   Source in /tmp/pip-wheel-qxb8iuoq/cryodrgn_7707b469060540c19870d821d31d679e has version 3.3.3, which satisfies requirement cryodrgn==3.3.3 from https://files.pythonhosted.org/packages/11/ae/9f1af7e2625233c381528c0d35f97d3155ce103983c9d4afcb275eb56924/cryodrgn-3.3.3.tar.gz
2024-06-26T02:57:56,850   Removed cryodrgn==3.3.3 from https://files.pythonhosted.org/packages/11/ae/9f1af7e2625233c381528c0d35f97d3155ce103983c9d4afcb275eb56924/cryodrgn-3.3.3.tar.gz from build tracker '/tmp/pip-build-tracker-1gn0g4zl'
2024-06-26T02:57:56,859 Created temporary directory: /tmp/pip-unpack-4wuolxy4
2024-06-26T02:57:56,860 Created temporary directory: /tmp/pip-unpack-gz19z1mz
2024-06-26T02:57:56,903 Building wheels for collected packages: cryodrgn
2024-06-26T02:57:56,907   Created temporary directory: /tmp/pip-wheel-ivycpfm4
2024-06-26T02:57:56,908   Destination directory: /tmp/pip-wheel-ivycpfm4
2024-06-26T02:57:56,910   Building wheel for cryodrgn (pyproject.toml): started
2024-06-26T02:57:56,911   Running command Building wheel for cryodrgn (pyproject.toml)
2024-06-26T02:57:57,736   running bdist_wheel
2024-06-26T02:57:57,761   running build
2024-06-26T02:57:57,761   running build_py
2024-06-26T02:57:57,768   creating build
2024-06-26T02:57:57,768   creating build/lib
2024-06-26T02:57:57,769   creating build/lib/cryodrgn
2024-06-26T02:57:57,770   copying cryodrgn/pose.py -> build/lib/cryodrgn
2024-06-26T02:57:57,772   copying cryodrgn/lie_tools.py -> build/lib/cryodrgn
2024-06-26T02:57:57,775   copying cryodrgn/so3_grid.py -> build/lib/cryodrgn
2024-06-26T02:57:57,776   copying cryodrgn/losses.py -> build/lib/cryodrgn
2024-06-26T02:57:57,778   copying cryodrgn/__init__.py -> build/lib/cryodrgn
2024-06-26T02:57:57,780   copying cryodrgn/dataset.py -> build/lib/cryodrgn
2024-06-26T02:57:57,782   copying cryodrgn/shift_grid3.py -> build/lib/cryodrgn
2024-06-26T02:57:57,783   copying cryodrgn/lattice.py -> build/lib/cryodrgn
2024-06-26T02:57:57,785   copying cryodrgn/_version.py -> build/lib/cryodrgn
2024-06-26T02:57:57,787   copying cryodrgn/utils.py -> build/lib/cryodrgn
2024-06-26T02:57:57,789   copying cryodrgn/config.py -> build/lib/cryodrgn
2024-06-26T02:57:57,790   copying cryodrgn/ctf.py -> build/lib/cryodrgn
2024-06-26T02:57:57,792   copying cryodrgn/models.py -> build/lib/cryodrgn
2024-06-26T02:57:57,796   copying cryodrgn/mrc.py -> build/lib/cryodrgn
2024-06-26T02:57:57,798   copying cryodrgn/pose_search.py -> build/lib/cryodrgn
2024-06-26T02:57:57,800   copying cryodrgn/command_line.py -> build/lib/cryodrgn
2024-06-26T02:57:57,802   copying cryodrgn/fft.py -> build/lib/cryodrgn
2024-06-26T02:57:57,803   copying cryodrgn/shift_grid.py -> build/lib/cryodrgn
2024-06-26T02:57:57,805   copying cryodrgn/analysis.py -> build/lib/cryodrgn
2024-06-26T02:57:57,807   copying cryodrgn/beta_schedule.py -> build/lib/cryodrgn
2024-06-26T02:57:57,809   copying cryodrgn/make_healpy.py -> build/lib/cryodrgn
2024-06-26T02:57:57,811   copying cryodrgn/starfile.py -> build/lib/cryodrgn
2024-06-26T02:57:57,813   copying cryodrgn/source.py -> build/lib/cryodrgn
2024-06-26T02:57:57,817   creating build/lib/cryodrgn/commands_utils
2024-06-26T02:57:57,817   copying cryodrgn/commands_utils/__init__.py -> build/lib/cryodrgn/commands_utils
2024-06-26T02:57:57,819   copying cryodrgn/commands_utils/translate_mrcs.py -> build/lib/cryodrgn/commands_utils
2024-06-26T02:57:57,820   copying cryodrgn/commands_utils/write_star.py -> build/lib/cryodrgn/commands_utils
2024-06-26T02:57:57,823   copying cryodrgn/commands_utils/filter_star.py -> build/lib/cryodrgn/commands_utils
2024-06-26T02:57:57,824   copying cryodrgn/commands_utils/clean.py -> build/lib/cryodrgn/commands_utils
2024-06-26T02:57:57,827   copying cryodrgn/commands_utils/filter_pkl.py -> build/lib/cryodrgn/commands_utils
2024-06-26T02:57:57,828   copying cryodrgn/commands_utils/plot_fsc.py -> build/lib/cryodrgn/commands_utils
2024-06-26T02:57:57,830   copying cryodrgn/commands_utils/fsc.py -> build/lib/cryodrgn/commands_utils
2024-06-26T02:57:57,832   copying cryodrgn/commands_utils/gen_mask.py -> build/lib/cryodrgn/commands_utils
2024-06-26T02:57:57,833   copying cryodrgn/commands_utils/view_cs_header.py -> build/lib/cryodrgn/commands_utils
2024-06-26T02:57:57,835   copying cryodrgn/commands_utils/add_psize.py -> build/lib/cryodrgn/commands_utils
2024-06-26T02:57:57,836   copying cryodrgn/commands_utils/view_header.py -> build/lib/cryodrgn/commands_utils
2024-06-26T02:57:57,838   copying cryodrgn/commands_utils/select_clusters.py -> build/lib/cryodrgn/commands_utils
2024-06-26T02:57:57,839   copying cryodrgn/commands_utils/flip_hand.py -> build/lib/cryodrgn/commands_utils
2024-06-26T02:57:57,841   copying cryodrgn/commands_utils/write_cs.py -> build/lib/cryodrgn/commands_utils
2024-06-26T02:57:57,843   copying cryodrgn/commands_utils/view_mrcs.py -> build/lib/cryodrgn/commands_utils
2024-06-26T02:57:57,845   copying cryodrgn/commands_utils/phase_flip.py -> build/lib/cryodrgn/commands_utils
2024-06-26T02:57:57,846   copying cryodrgn/commands_utils/invert_contrast.py -> build/lib/cryodrgn/commands_utils
2024-06-26T02:57:57,848   copying cryodrgn/commands_utils/select_random.py -> build/lib/cryodrgn/commands_utils
2024-06-26T02:57:57,849   copying cryodrgn/commands_utils/filter_mrcs.py -> build/lib/cryodrgn/commands_utils
2024-06-26T02:57:57,851   copying cryodrgn/commands_utils/concat_pkls.py -> build/lib/cryodrgn/commands_utils
2024-06-26T02:57:57,854   creating build/lib/cryodrgn/commands
2024-06-26T02:57:57,855   copying cryodrgn/commands/__init__.py -> build/lib/cryodrgn/commands
2024-06-26T02:57:57,856   copying cryodrgn/commands/parse_ctf_star.py -> build/lib/cryodrgn/commands
2024-06-26T02:57:57,858   copying cryodrgn/commands/abinit_homo.py -> build/lib/cryodrgn/commands
2024-06-26T02:57:57,860   copying cryodrgn/commands/direct_traversal.py -> build/lib/cryodrgn/commands
2024-06-26T02:57:57,862   copying cryodrgn/commands/abinit_het.py -> build/lib/cryodrgn/commands
2024-06-26T02:57:57,865   copying cryodrgn/commands/backproject_voxel.py -> build/lib/cryodrgn/commands
2024-06-26T02:57:57,867   copying cryodrgn/commands/eval_images.py -> build/lib/cryodrgn/commands
2024-06-26T02:57:57,870   copying cryodrgn/commands/downsample.py -> build/lib/cryodrgn/commands
2024-06-26T02:57:57,872   copying cryodrgn/commands/analyze_landscape.py -> build/lib/cryodrgn/commands
2024-06-26T02:57:57,874   copying cryodrgn/commands/parse_pose_star.py -> build/lib/cryodrgn/commands
2024-06-26T02:57:57,876   copying cryodrgn/commands/parse_pose_csparc.py -> build/lib/cryodrgn/commands
2024-06-26T02:57:57,878   copying cryodrgn/commands/eval_vol.py -> build/lib/cryodrgn/commands
2024-06-26T02:57:57,880   copying cryodrgn/commands/filter.py -> build/lib/cryodrgn/commands
2024-06-26T02:57:57,882   copying cryodrgn/commands/view_config.py -> build/lib/cryodrgn/commands
2024-06-26T02:57:57,883   copying cryodrgn/commands/train_nn.py -> build/lib/cryodrgn/commands
2024-06-26T02:57:57,886   copying cryodrgn/commands/analyze.py -> build/lib/cryodrgn/commands
2024-06-26T02:57:57,888   copying cryodrgn/commands/pc_traversal.py -> build/lib/cryodrgn/commands
2024-06-26T02:57:57,890   copying cryodrgn/commands/train_vae.py -> build/lib/cryodrgn/commands
2024-06-26T02:57:57,892   copying cryodrgn/commands/parse_ctf_csparc.py -> build/lib/cryodrgn/commands
2024-06-26T02:57:57,894   copying cryodrgn/commands/analyze_landscape_full.py -> build/lib/cryodrgn/commands
2024-06-26T02:57:57,896   copying cryodrgn/commands/graph_traversal.py -> build/lib/cryodrgn/commands
2024-06-26T02:57:57,898   running egg_info
2024-06-26T02:57:57,903   writing cryodrgn.egg-info/PKG-INFO
2024-06-26T02:57:57,911   writing dependency_links to cryodrgn.egg-info/dependency_links.txt
2024-06-26T02:57:57,913   writing entry points to cryodrgn.egg-info/entry_points.txt
2024-06-26T02:57:57,917   writing requirements to cryodrgn.egg-info/requires.txt
2024-06-26T02:57:57,918   writing top-level names to cryodrgn.egg-info/top_level.txt
2024-06-26T02:57:57,957   ERROR setuptools_scm._file_finders.git listing git files failed - pretending there aren't any
2024-06-26T02:57:57,966   reading manifest file 'cryodrgn.egg-info/SOURCES.txt'
2024-06-26T02:57:57,974   reading manifest template 'MANIFEST.in'
2024-06-26T02:57:57,976   adding license file 'LICENSE.txt'
2024-06-26T02:57:57,989   writing manifest file 'cryodrgn.egg-info/SOURCES.txt'
2024-06-26T02:57:58,002   copying cryodrgn/healpy_grid.json -> build/lib/cryodrgn
2024-06-26T02:57:58,171   copying cryodrgn/commands_utils/README.md -> build/lib/cryodrgn/commands_utils
2024-06-26T02:57:58,173   copying cryodrgn/commands/README.md -> build/lib/cryodrgn/commands
2024-06-26T02:57:58,175   creating build/lib/cryodrgn/templates
2024-06-26T02:57:58,175   copying cryodrgn/templates/cryoDRGN_ET_viz_template.ipynb -> build/lib/cryodrgn/templates
2024-06-26T02:57:58,178   copying cryodrgn/templates/cryoDRGN_analyze_landscape_template.ipynb -> build/lib/cryodrgn/templates
2024-06-26T02:57:58,180   copying cryodrgn/templates/cryoDRGN_figures_template.ipynb -> build/lib/cryodrgn/templates
2024-06-26T02:57:58,183   copying cryodrgn/templates/cryoDRGN_filtering_template.ipynb -> build/lib/cryodrgn/templates
2024-06-26T02:57:58,186   copying cryodrgn/templates/cryoDRGN_viz_template.ipynb -> build/lib/cryodrgn/templates
2024-06-26T02:57:58,204   installing to build/bdist.linux-armv7l/wheel
2024-06-26T02:57:58,204   running install
2024-06-26T02:57:58,229   running install_lib
2024-06-26T02:57:58,235   creating build/bdist.linux-armv7l
2024-06-26T02:57:58,235   creating build/bdist.linux-armv7l/wheel
2024-06-26T02:57:58,237   creating build/bdist.linux-armv7l/wheel/cryodrgn
2024-06-26T02:57:58,238   copying build/lib/cryodrgn/pose.py -> build/bdist.linux-armv7l/wheel/cryodrgn
2024-06-26T02:57:58,240   copying build/lib/cryodrgn/lie_tools.py -> build/bdist.linux-armv7l/wheel/cryodrgn
2024-06-26T02:57:58,243   copying build/lib/cryodrgn/so3_grid.py -> build/bdist.linux-armv7l/wheel/cryodrgn
2024-06-26T02:57:58,244   copying build/lib/cryodrgn/losses.py -> build/bdist.linux-armv7l/wheel/cryodrgn
2024-06-26T02:57:58,246   copying build/lib/cryodrgn/__init__.py -> build/bdist.linux-armv7l/wheel/cryodrgn
2024-06-26T02:57:58,248   copying build/lib/cryodrgn/dataset.py -> build/bdist.linux-armv7l/wheel/cryodrgn
2024-06-26T02:57:58,250   copying build/lib/cryodrgn/shift_grid3.py -> build/bdist.linux-armv7l/wheel/cryodrgn
2024-06-26T02:57:58,251   copying build/lib/cryodrgn/lattice.py -> build/bdist.linux-armv7l/wheel/cryodrgn
2024-06-26T02:57:58,253   copying build/lib/cryodrgn/_version.py -> build/bdist.linux-armv7l/wheel/cryodrgn
2024-06-26T02:57:58,255   copying build/lib/cryodrgn/utils.py -> build/bdist.linux-armv7l/wheel/cryodrgn
2024-06-26T02:57:58,257   copying build/lib/cryodrgn/config.py -> build/bdist.linux-armv7l/wheel/cryodrgn
2024-06-26T02:57:58,259   creating build/bdist.linux-armv7l/wheel/cryodrgn/commands_utils
2024-06-26T02:57:58,260   copying build/lib/cryodrgn/commands_utils/__init__.py -> build/bdist.linux-armv7l/wheel/cryodrgn/commands_utils
2024-06-26T02:57:58,262   copying build/lib/cryodrgn/commands_utils/translate_mrcs.py -> build/bdist.linux-armv7l/wheel/cryodrgn/commands_utils
2024-06-26T02:57:58,264   copying build/lib/cryodrgn/commands_utils/write_star.py -> build/bdist.linux-armv7l/wheel/cryodrgn/commands_utils
2024-06-26T02:57:58,266   copying build/lib/cryodrgn/commands_utils/filter_star.py -> build/bdist.linux-armv7l/wheel/cryodrgn/commands_utils
2024-06-26T02:57:58,268   copying build/lib/cryodrgn/commands_utils/clean.py -> build/bdist.linux-armv7l/wheel/cryodrgn/commands_utils
2024-06-26T02:57:58,270   copying build/lib/cryodrgn/commands_utils/filter_pkl.py -> build/bdist.linux-armv7l/wheel/cryodrgn/commands_utils
2024-06-26T02:57:58,272   copying build/lib/cryodrgn/commands_utils/plot_fsc.py -> build/bdist.linux-armv7l/wheel/cryodrgn/commands_utils
2024-06-26T02:57:58,274   copying build/lib/cryodrgn/commands_utils/fsc.py -> build/bdist.linux-armv7l/wheel/cryodrgn/commands_utils
2024-06-26T02:57:58,275   copying build/lib/cryodrgn/commands_utils/gen_mask.py -> build/bdist.linux-armv7l/wheel/cryodrgn/commands_utils
2024-06-26T02:57:58,277   copying build/lib/cryodrgn/commands_utils/view_cs_header.py -> build/bdist.linux-armv7l/wheel/cryodrgn/commands_utils
2024-06-26T02:57:58,279   copying build/lib/cryodrgn/commands_utils/README.md -> build/bdist.linux-armv7l/wheel/cryodrgn/commands_utils
2024-06-26T02:57:58,280   copying build/lib/cryodrgn/commands_utils/add_psize.py -> build/bdist.linux-armv7l/wheel/cryodrgn/commands_utils
2024-06-26T02:57:58,282   copying build/lib/cryodrgn/commands_utils/view_header.py -> build/bdist.linux-armv7l/wheel/cryodrgn/commands_utils
2024-06-26T02:57:58,283   copying build/lib/cryodrgn/commands_utils/select_clusters.py -> build/bdist.linux-armv7l/wheel/cryodrgn/commands_utils
2024-06-26T02:57:58,285   copying build/lib/cryodrgn/commands_utils/flip_hand.py -> build/bdist.linux-armv7l/wheel/cryodrgn/commands_utils
2024-06-26T02:57:58,287   copying build/lib/cryodrgn/commands_utils/write_cs.py -> build/bdist.linux-armv7l/wheel/cryodrgn/commands_utils
2024-06-26T02:57:58,288   copying build/lib/cryodrgn/commands_utils/view_mrcs.py -> build/bdist.linux-armv7l/wheel/cryodrgn/commands_utils
2024-06-26T02:57:58,290   copying build/lib/cryodrgn/commands_utils/phase_flip.py -> build/bdist.linux-armv7l/wheel/cryodrgn/commands_utils
2024-06-26T02:57:58,292   copying build/lib/cryodrgn/commands_utils/invert_contrast.py -> build/bdist.linux-armv7l/wheel/cryodrgn/commands_utils
2024-06-26T02:57:58,293   copying build/lib/cryodrgn/commands_utils/select_random.py -> build/bdist.linux-armv7l/wheel/cryodrgn/commands_utils
2024-06-26T02:57:58,295   copying build/lib/cryodrgn/commands_utils/filter_mrcs.py -> build/bdist.linux-armv7l/wheel/cryodrgn/commands_utils
2024-06-26T02:57:58,297   copying build/lib/cryodrgn/commands_utils/concat_pkls.py -> build/bdist.linux-armv7l/wheel/cryodrgn/commands_utils
2024-06-26T02:57:58,299   copying build/lib/cryodrgn/ctf.py -> build/bdist.linux-armv7l/wheel/cryodrgn
2024-06-26T02:57:58,301   copying build/lib/cryodrgn/models.py -> build/bdist.linux-armv7l/wheel/cryodrgn
2024-06-26T02:57:58,304   copying build/lib/cryodrgn/mrc.py -> build/bdist.linux-armv7l/wheel/cryodrgn
2024-06-26T02:57:58,306   copying build/lib/cryodrgn/pose_search.py -> build/bdist.linux-armv7l/wheel/cryodrgn
2024-06-26T02:57:58,309   copying build/lib/cryodrgn/command_line.py -> build/bdist.linux-armv7l/wheel/cryodrgn
2024-06-26T02:57:58,310   copying build/lib/cryodrgn/fft.py -> build/bdist.linux-armv7l/wheel/cryodrgn
2024-06-26T02:57:58,312   copying build/lib/cryodrgn/shift_grid.py -> build/bdist.linux-armv7l/wheel/cryodrgn
2024-06-26T02:57:58,314   copying build/lib/cryodrgn/healpy_grid.json -> build/bdist.linux-armv7l/wheel/cryodrgn
2024-06-26T02:57:58,486   copying build/lib/cryodrgn/analysis.py -> build/bdist.linux-armv7l/wheel/cryodrgn
2024-06-26T02:57:58,489   creating build/bdist.linux-armv7l/wheel/cryodrgn/commands
2024-06-26T02:57:58,490   copying build/lib/cryodrgn/commands/__init__.py -> build/bdist.linux-armv7l/wheel/cryodrgn/commands
2024-06-26T02:57:58,492   copying build/lib/cryodrgn/commands/parse_ctf_star.py -> build/bdist.linux-armv7l/wheel/cryodrgn/commands
2024-06-26T02:57:58,494   copying build/lib/cryodrgn/commands/abinit_homo.py -> build/bdist.linux-armv7l/wheel/cryodrgn/commands
2024-06-26T02:57:58,496   copying build/lib/cryodrgn/commands/direct_traversal.py -> build/bdist.linux-armv7l/wheel/cryodrgn/commands
2024-06-26T02:57:58,499   copying build/lib/cryodrgn/commands/abinit_het.py -> build/bdist.linux-armv7l/wheel/cryodrgn/commands
2024-06-26T02:57:58,502   copying build/lib/cryodrgn/commands/backproject_voxel.py -> build/bdist.linux-armv7l/wheel/cryodrgn/commands
2024-06-26T02:57:58,505   copying build/lib/cryodrgn/commands/eval_images.py -> build/bdist.linux-armv7l/wheel/cryodrgn/commands
2024-06-26T02:57:58,508   copying build/lib/cryodrgn/commands/downsample.py -> build/bdist.linux-armv7l/wheel/cryodrgn/commands
2024-06-26T02:57:58,510   copying build/lib/cryodrgn/commands/analyze_landscape.py -> build/bdist.linux-armv7l/wheel/cryodrgn/commands
2024-06-26T02:57:58,513   copying build/lib/cryodrgn/commands/parse_pose_star.py -> build/bdist.linux-armv7l/wheel/cryodrgn/commands
2024-06-26T02:57:58,516   copying build/lib/cryodrgn/commands/parse_pose_csparc.py -> build/bdist.linux-armv7l/wheel/cryodrgn/commands
2024-06-26T02:57:58,518   copying build/lib/cryodrgn/commands/eval_vol.py -> build/bdist.linux-armv7l/wheel/cryodrgn/commands
2024-06-26T02:57:58,521   copying build/lib/cryodrgn/commands/README.md -> build/bdist.linux-armv7l/wheel/cryodrgn/commands
2024-06-26T02:57:58,523   copying build/lib/cryodrgn/commands/filter.py -> build/bdist.linux-armv7l/wheel/cryodrgn/commands
2024-06-26T02:57:58,525   copying build/lib/cryodrgn/commands/view_config.py -> build/bdist.linux-armv7l/wheel/cryodrgn/commands
2024-06-26T02:57:58,527   copying build/lib/cryodrgn/commands/train_nn.py -> build/bdist.linux-armv7l/wheel/cryodrgn/commands
2024-06-26T02:57:58,530   copying build/lib/cryodrgn/commands/analyze.py -> build/bdist.linux-armv7l/wheel/cryodrgn/commands
2024-06-26T02:57:58,533   copying build/lib/cryodrgn/commands/pc_traversal.py -> build/bdist.linux-armv7l/wheel/cryodrgn/commands
2024-06-26T02:57:58,535   copying build/lib/cryodrgn/commands/train_vae.py -> build/bdist.linux-armv7l/wheel/cryodrgn/commands
2024-06-26T02:57:58,538   copying build/lib/cryodrgn/commands/parse_ctf_csparc.py -> build/bdist.linux-armv7l/wheel/cryodrgn/commands
2024-06-26T02:57:58,540   copying build/lib/cryodrgn/commands/analyze_landscape_full.py -> build/bdist.linux-armv7l/wheel/cryodrgn/commands
2024-06-26T02:57:58,543   copying build/lib/cryodrgn/commands/graph_traversal.py -> build/bdist.linux-armv7l/wheel/cryodrgn/commands
2024-06-26T02:57:58,546   copying build/lib/cryodrgn/beta_schedule.py -> build/bdist.linux-armv7l/wheel/cryodrgn
2024-06-26T02:57:58,548   copying build/lib/cryodrgn/make_healpy.py -> build/bdist.linux-armv7l/wheel/cryodrgn
2024-06-26T02:57:58,550   copying build/lib/cryodrgn/starfile.py -> build/bdist.linux-armv7l/wheel/cryodrgn
2024-06-26T02:57:58,552   copying build/lib/cryodrgn/source.py -> build/bdist.linux-armv7l/wheel/cryodrgn
2024-06-26T02:57:58,556   creating build/bdist.linux-armv7l/wheel/cryodrgn/templates
2024-06-26T02:57:58,557   copying build/lib/cryodrgn/templates/cryoDRGN_viz_template.ipynb -> build/bdist.linux-armv7l/wheel/cryodrgn/templates
2024-06-26T02:57:58,560   copying build/lib/cryodrgn/templates/cryoDRGN_figures_template.ipynb -> build/bdist.linux-armv7l/wheel/cryodrgn/templates
2024-06-26T02:57:58,563   copying build/lib/cryodrgn/templates/cryoDRGN_filtering_template.ipynb -> build/bdist.linux-armv7l/wheel/cryodrgn/templates
2024-06-26T02:57:58,566   copying build/lib/cryodrgn/templates/cryoDRGN_ET_viz_template.ipynb -> build/bdist.linux-armv7l/wheel/cryodrgn/templates
2024-06-26T02:57:58,569   copying build/lib/cryodrgn/templates/cryoDRGN_analyze_landscape_template.ipynb -> build/bdist.linux-armv7l/wheel/cryodrgn/templates
2024-06-26T02:57:58,571   running install_egg_info
2024-06-26T02:57:58,577   Copying cryodrgn.egg-info to build/bdist.linux-armv7l/wheel/cryodrgn-3.3.3-py3.9.egg-info
2024-06-26T02:57:58,591   running install_scripts
2024-06-26T02:57:58,620   creating build/bdist.linux-armv7l/wheel/cryodrgn-3.3.3.dist-info/WHEEL
2024-06-26T02:57:58,624   creating '/tmp/pip-wheel-ivycpfm4/.tmp-odj436m6/cryodrgn-3.3.3-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2024-06-26T02:57:58,627   adding 'cryodrgn/__init__.py'
2024-06-26T02:57:58,628   adding 'cryodrgn/_version.py'
2024-06-26T02:57:58,631   adding 'cryodrgn/analysis.py'
2024-06-26T02:57:58,633   adding 'cryodrgn/beta_schedule.py'
2024-06-26T02:57:58,634   adding 'cryodrgn/command_line.py'
2024-06-26T02:57:58,635   adding 'cryodrgn/config.py'
2024-06-26T02:57:58,637   adding 'cryodrgn/ctf.py'
2024-06-26T02:57:58,639   adding 'cryodrgn/dataset.py'
2024-06-26T02:57:58,641   adding 'cryodrgn/fft.py'
2024-06-26T02:57:59,420   adding 'cryodrgn/healpy_grid.json'
2024-06-26T02:57:59,486   adding 'cryodrgn/lattice.py'
2024-06-26T02:57:59,487   adding 'cryodrgn/lie_tools.py'
2024-06-26T02:57:59,489   adding 'cryodrgn/losses.py'
2024-06-26T02:57:59,490   adding 'cryodrgn/make_healpy.py'
2024-06-26T02:57:59,494   adding 'cryodrgn/models.py'
2024-06-26T02:57:59,496   adding 'cryodrgn/mrc.py'
2024-06-26T02:57:59,498   adding 'cryodrgn/pose.py'
2024-06-26T02:57:59,500   adding 'cryodrgn/pose_search.py'
2024-06-26T02:57:59,502   adding 'cryodrgn/shift_grid.py'
2024-06-26T02:57:59,503   adding 'cryodrgn/shift_grid3.py'
2024-06-26T02:57:59,504   adding 'cryodrgn/so3_grid.py'
2024-06-26T02:57:59,507   adding 'cryodrgn/source.py'
2024-06-26T02:57:59,508   adding 'cryodrgn/starfile.py'
2024-06-26T02:57:59,510   adding 'cryodrgn/utils.py'
2024-06-26T02:57:59,512   adding 'cryodrgn/commands/README.md'
2024-06-26T02:57:59,513   adding 'cryodrgn/commands/__init__.py'
2024-06-26T02:57:59,518   adding 'cryodrgn/commands/abinit_het.py'
2024-06-26T02:57:59,521   adding 'cryodrgn/commands/abinit_homo.py'
2024-06-26T02:57:59,524   adding 'cryodrgn/commands/analyze.py'
2024-06-26T02:57:59,526   adding 'cryodrgn/commands/analyze_landscape.py'
2024-06-26T02:57:59,528   adding 'cryodrgn/commands/analyze_landscape_full.py'
2024-06-26T02:57:59,530   adding 'cryodrgn/commands/backproject_voxel.py'
2024-06-26T02:57:59,532   adding 'cryodrgn/commands/direct_traversal.py'
2024-06-26T02:57:59,534   adding 'cryodrgn/commands/downsample.py'
2024-06-26T02:57:59,536   adding 'cryodrgn/commands/eval_images.py'
2024-06-26T02:57:59,537   adding 'cryodrgn/commands/eval_vol.py'
2024-06-26T02:57:59,539   adding 'cryodrgn/commands/filter.py'
2024-06-26T02:57:59,541   adding 'cryodrgn/commands/graph_traversal.py'
2024-06-26T02:57:59,543   adding 'cryodrgn/commands/parse_ctf_csparc.py'
2024-06-26T02:57:59,544   adding 'cryodrgn/commands/parse_ctf_star.py'
2024-06-26T02:57:59,546   adding 'cryodrgn/commands/parse_pose_csparc.py'
2024-06-26T02:57:59,547   adding 'cryodrgn/commands/parse_pose_star.py'
2024-06-26T02:57:59,548   adding 'cryodrgn/commands/pc_traversal.py'
2024-06-26T02:57:59,551   adding 'cryodrgn/commands/train_nn.py'
2024-06-26T02:57:59,555   adding 'cryodrgn/commands/train_vae.py'
2024-06-26T02:57:59,556   adding 'cryodrgn/commands/view_config.py'
2024-06-26T02:57:59,558   adding 'cryodrgn/commands_utils/README.md'
2024-06-26T02:57:59,559   adding 'cryodrgn/commands_utils/__init__.py'
2024-06-26T02:57:59,560   adding 'cryodrgn/commands_utils/add_psize.py'
2024-06-26T02:57:59,562   adding 'cryodrgn/commands_utils/clean.py'
2024-06-26T02:57:59,563   adding 'cryodrgn/commands_utils/concat_pkls.py'
2024-06-26T02:57:59,565   adding 'cryodrgn/commands_utils/filter_mrcs.py'
2024-06-26T02:57:59,566   adding 'cryodrgn/commands_utils/filter_pkl.py'
2024-06-26T02:57:59,567   adding 'cryodrgn/commands_utils/filter_star.py'
2024-06-26T02:57:59,568   adding 'cryodrgn/commands_utils/flip_hand.py'
2024-06-26T02:57:59,570   adding 'cryodrgn/commands_utils/fsc.py'
2024-06-26T02:57:59,571   adding 'cryodrgn/commands_utils/gen_mask.py'
2024-06-26T02:57:59,572   adding 'cryodrgn/commands_utils/invert_contrast.py'
2024-06-26T02:57:59,574   adding 'cryodrgn/commands_utils/phase_flip.py'
2024-06-26T02:57:59,575   adding 'cryodrgn/commands_utils/plot_fsc.py'
2024-06-26T02:57:59,576   adding 'cryodrgn/commands_utils/select_clusters.py'
2024-06-26T02:57:59,578   adding 'cryodrgn/commands_utils/select_random.py'
2024-06-26T02:57:59,579   adding 'cryodrgn/commands_utils/translate_mrcs.py'
2024-06-26T02:57:59,580   adding 'cryodrgn/commands_utils/view_cs_header.py'
2024-06-26T02:57:59,581   adding 'cryodrgn/commands_utils/view_header.py'
2024-06-26T02:57:59,583   adding 'cryodrgn/commands_utils/view_mrcs.py'
2024-06-26T02:57:59,584   adding 'cryodrgn/commands_utils/write_cs.py'
2024-06-26T02:57:59,586   adding 'cryodrgn/commands_utils/write_star.py'
2024-06-26T02:57:59,589   adding 'cryodrgn/templates/cryoDRGN_ET_viz_template.ipynb'
2024-06-26T02:57:59,591   adding 'cryodrgn/templates/cryoDRGN_analyze_landscape_template.ipynb'
2024-06-26T02:57:59,592   adding 'cryodrgn/templates/cryoDRGN_figures_template.ipynb'
2024-06-26T02:57:59,595   adding 'cryodrgn/templates/cryoDRGN_filtering_template.ipynb'
2024-06-26T02:57:59,598   adding 'cryodrgn/templates/cryoDRGN_viz_template.ipynb'
2024-06-26T02:57:59,605   adding 'cryodrgn-3.3.3.dist-info/LICENSE.txt'
2024-06-26T02:57:59,610   adding 'cryodrgn-3.3.3.dist-info/METADATA'
2024-06-26T02:57:59,611   adding 'cryodrgn-3.3.3.dist-info/WHEEL'
2024-06-26T02:57:59,612   adding 'cryodrgn-3.3.3.dist-info/entry_points.txt'
2024-06-26T02:57:59,613   adding 'cryodrgn-3.3.3.dist-info/top_level.txt'
2024-06-26T02:57:59,614   adding 'cryodrgn-3.3.3.dist-info/RECORD'
2024-06-26T02:57:59,637   removing build/bdist.linux-armv7l/wheel
2024-06-26T02:57:59,770   Building wheel for cryodrgn (pyproject.toml): finished with status 'done'
2024-06-26T02:57:59,798   Created wheel for cryodrgn: filename=cryodrgn-3.3.3-py3-none-any.whl size=1163247 sha256=ff7c01a3ef9512e092ed9f9c11a163cc4a9c99f25678455ad500d4dca322f1a0
2024-06-26T02:57:59,799   Stored in directory: /tmp/pip-ephem-wheel-cache-69q5cyiy/wheels/1c/7e/09/24d4244f75519ce279783ef35fb65cc25a7ece45423a2b86e6
2024-06-26T02:57:59,817 Successfully built cryodrgn
2024-06-26T02:57:59,851 Removed build tracker: '/tmp/pip-build-tracker-1gn0g4zl'