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1 links for project 'vsc-install': discarding no candidates 2024-06-27T09:34:03,539 Collecting vsc-install==0.21.0 2024-06-27T09:34:03,542 Created temporary directory: /tmp/pip-unpack-c_rgneza 2024-06-27T09:34:03,752 Downloading vsc_install-0.21.0.tar.gz (81 kB) 2024-06-27T09:34:03,874 Added vsc-install==0.21.0 from https://files.pythonhosted.org/packages/9f/3a/0bc31269a5effab0800f76d6ea0c82db1fdf2c72811ef1fc7a3e9be0ac94/vsc_install-0.21.0.tar.gz to build tracker '/tmp/pip-build-tracker-6hzeunjl' 2024-06-27T09:34:03,875 Running setup.py (path:/tmp/pip-wheel-jrf792pc/vsc-install_dbe949f0f78c4a09b3f61727347c7461/setup.py) egg_info for package vsc-install 2024-06-27T09:34:03,876 Created temporary directory: /tmp/pip-pip-egg-info-7c2uyabx 2024-06-27T09:34:03,877 Preparing metadata (setup.py): started 2024-06-27T09:34:03,878 Running command python setup.py egg_info 2024-06-27T09:34:04,668 /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/log.py:45: UserWarning: Logging class to prefix the message with a human readable log level 2024-06-27T09:34:04,668 warnings.warn(Log.__doc__) # avoid DeprecationWarning to ensure warn is shown 2024-06-27T09:34:04,676 WARN: cleanup lib/vsc_install.egg-info 2024-06-27T09:34:04,732 new target {'cmdclass': {'bdist_rpm': , 'egg_info': , 'install_scripts': , 'sdist': , 'test': , 'vsc_release': }, 'command_packages': ['vsc.install.shared_setup', 'shared_setup_dist_only', 'setuptools.command', 'distutils.command'], 'download_url': 'Author: Stijn De Weirdt;Andy Georges;Jens Timmerman', 'package_dir': {'': 'lib'}, 'setup_requires': ['setuptools'], 'test_suite': 'test', 'url': 'https://github.com/hpcugent/vsc-install', 'dependency_links': [], 'install_requires': ['setuptools < 54.0', 'mock'], 'tests_require': ['mock', 'pylint < 3', 'prospector < 1.10.4', 'pylint-plugin-utils < 0.8', 'pylint-django < 2.5.4', 'astroid <= 2.17.0-dev0', 'pycodestyle < 2.10', 'requirementslib < 2.3.1'], 'packages': dict_keys(['vsc', 'vsc.install']), 'classifiers': ['License :: OSI Approved :: GNU Lesser General Public License v2 or later (LGPLv2+)'], 'license': 'LGPLv2+', 'description': "vsc-install provides shared setuptools functions and classes for python libraries developed by UGent's HPC group", 'long_description': 'Description\n===========\nvsc-install provides shared setuptools functions and classes for python libraries developed by UGent\'s HPC group\n\nCommon pitfalls\n=========\nbdist_rpm will fail if your install_requires = \'setuptools\' because it will fail to find a setuptools rpm.\n```\nexport VSC_RPM_PYTHON=1\n```\nwill make sure the `python-` prefix is added to the packages in install_requires for building RPM\'s so python-setuptools will be used.\n\nAdd tests\n=========\n\nTest are python modules in the `test` directory which have subclass of `TestCase`\nand at least one method that has a name starting with `test_`\n\nYou are advised to use\n```python\nfrom vsc.install.testing import TestCase\n```\n(instead of basic `TestCase` from `unittest`).\n\nAnd any `__main__` or `suite()` is not needed (anymore).\n\nInitialise the test directory with\n\n```bash\nmkdir -p test\necho \'\' > test/__init__.py\necho \'from vsc.install.commontest import CommonTest\' > test/00-import.py\n```\n\nWhen the tests are run, `test`, `lib` and `bin` (if relevant) are added to `sys.path`,\nso no need to do so in the tets modules.\n\nRun tests\n=========\n\n```bash\npython setup.py test\n```\n\nFilter tests with `-F` (test module names) and `-f` (test method names)\n\nSee also\n\n```bash\npython setup.py test --help\n```\n\nThe dependencies are installed automatically in the `.eggs` directory. It will first try\n`github.ugent.be` and then `github.com` to install them. The same method is used as through\nwhich the original repository was cloned (http, ssh, ...). In case you need private\ndependencies, always clone with ssh.\n\nIn case following error occurs, it means there is a test module `XYZ` that cannot be imported.\n\n```txt\nFile "setup.py", line 499, in loadTestsFromModule\n testsuites = ScanningLoader.loadTestsFromModule(self, module)\nFile "build/bdist.linux-x86_64/egg/setuptools/command/test.py", line 37, in loadTestsFromModule\nFile "/usr/lib64/python2.7/unittest/loader.py", line 100, in loadTestsFromName\n parent, obj = obj, getattr(obj, part)\nAttributeError: \'module\' object has no attribute \'XYZ\'\n```\n\nYou can try get the actual import error for fixing the issue with\n```bash\npython -c \'import sys;sys.path.insert(0, "test");import XYZ;\'\n```\n\nFix failing tests\n=================\n\n* Missing / incorrect `LICENSE`\n\n * Copy the appropirate license file under `known_licenses` in the project directory and name the file `LICENSE`\n\n* Missing `README.md`\n\n * Create a `README.md` file with at least a `Description` section\n\n* Fix license headers as described in https://github.com/hpcugent/vsc-install/blob/master/lib/vsc/install/headers.py\n\n ```\n cd \n REPO_BASE_DIR=$PWD python -m vsc.install.headers path/to/file script_or_not\n ```\n\n Fix them all at once using find\n\n ```\n find ./{lib,test} -type f -name \'*.py\' | REPO_BASE_DIR=$PWD xargs -I \'{}\' python -m vsc.install.headers \'{}\'\n find ./bin -type f -name \'*.py\' | REPO_BASE_DIR=$PWD xargs -I \'{}\' python -m vsc.install.headers \'{}\' 1\n ```\n\n Do not forget to check the diff.\n Modules/scripts without docstring (or magic comment \'### END OF HEADER\') (incl. test modules)\n will get correct header appended to existing one. Add a docstring (or magic comment) to resolve this.\n* Python scripts (i.e. with a python shebang and installed as scripts in setup) have to use `#!/usr/bin/env python` as shebang\n* Remove any `build_rpms_settings.sh` leftovers\n* The `TARGET` dict in `setup.py` should be minimal unless you really know what you are doing (i.e. if it is truly different from defaults)\n\n * Remove `name`, `scripts`, ...\n\n* `Exception: vsc namespace packages do not allow non-shared namespace`\n\n * Add to the `__init__.py`\n\n ```python\n """\n Allow other packages to extend this namespace, zip safe setuptools style\n """\n import pkg_resources\n pkg_resources.declare_namespace(__name__)\n ```\n\n\nbare-except\n-----------\n```python\ntry:\n # something\nexcept:\n```\nThis is bad, because this except will also catch sys.exit() or Keyboardinterupts, something you\ntypically do not want, if you catch these the program will be in a weird state and then continue on,\nwhilst the person who just pressed ctrl+c is wondering what is going on and why it is not stopping.\n\nso at the very least make this\nexcept Exception (which doesn\'t catch sys.exit and KeyboardInterupt)\nand it would be appreciated if you could actually figure out what exceptions to expect and only catch those\nand let your program crash if something you did not intend happens\nbecause it helps developers catch weird errors on their side better.\n\nif you do something like\n```python\ntry:\n Path(int(somestring)).write_text(\'important data\')\nexcept Exception:\n pass # if somestring is not an integer, we didn\'t need to write anyway, but otherwise we do\n```\nbecause you know sometimes this string does not contain an integer, so the int() call can fail\nyou should really only catch ValueError, because this will also fail when your disk is full, or you don\'t have permissions\nor xxx other reasons, and the important data will not be written out and nobody will notice anything!\n\n\n\nif not \'a\' in somelist -> if \'a\' not in somelist\n-------------------------------------------------\n\nthis isn\'t that big of a deal, but if everyone is consistent it\'s less likely to introduce bugs when a not is added or removed where it didn\'t need to.\nAlso helps code review, not in reads better, like english.\n\n\narguments-differ\n-----------------\n\nthis will give you errors if you override a function of a superclass but don\'t use the same amount of arguments,\nusing less will surely give you errors, so the linter catches this for you now\n\nunused-argument\n-----------------\nif you have a function definition witch accepts an argument that is never used in the function body this will now give an error.\nclean up your function definition, or fix the error where you actually do need to take this argument into account\n\nunused-variable\n----------------\ndefining a variable and then not using it anymore smells bad, why did you do that?\nsometimes you do things like\n```python\nout, exit_code = run_command(something)\n```\nbut you are not interested in the out, only in the exit code,\nin this case, write\n```python\n_, exit_code = run_command(something)\n```\n\nusing _ as a variable name lets pylint and other readers know you do not intend to use that output in the first place.\n\n\nreimported\n-------------\nwhen you re import a name somewhere else,\nusually this is just an import to much, or 2 imports with the same name, pay attention.\n```python\nimport six\nfrom django import six\n```\n=>\n```python\nimport six\nfrom django import six as django_six\n```\n\nredefinition of unused name\n----------------------------\nthis usually also points to something you did not expect\n```python\nfrom vsc.accountpageclient import VscGroup\n\n\nclass VscGroup(object):\n pass\n```\n\n=> do you need the import? use import as\ndid you mean to use the same name? ...\n\nRedefined builtin\n-----------------\nuse different name, for example change\n\n```python\ndef filter(b_b):\n """Function filter"""\n return b_b\n```\n=>\n```python\ndef new_filter(b_b):\n """Function filter"""\n return b_b\n```\n\nlogging-not-lazy\n----------------\n\nDon\'t use string interpolation when logging if not needed:\n\n```python\nimport logging\nname = \'world\'\nprogram =\'python\'\nlogging.info(\'Hello %s! This is %s.\' % (name, program))\n```\n=>\n```python\nimport logging\nname = \'world\'\nprogram =\'python\'\nlogging.info(\'Hello %s! This is %s.\', name, program)\n```\n\n\nFix Python 3 failing tests\n==========================\n\n* We try to follow https://docs.python.org/3/howto/pyporting.html\n* some useful info can be found here as well https://portingguide.readthedocs.io/en/latest/index.html\n\nunpacking-in-except / redefine-in-handler\n-----------------------------------------\n\nMultiple exception have to be grouped in a tuple like\n\n```python\n ...\nexcept (ExceptionOne, ExceptionTwo) ...\n ...\n```\n\n(espcially when used like `except A, B:` which should be `except (A, B):`.\n\nOld raise syntax\n----------------\nPython 2’s **raise** statement was designed at a time when exceptions weren’t classes, and an exception’s _type_, _value_, and _traceback_ components were three separate objects. In Python 3, one single object includes all information about an exception.\n\n```python\nraise NameError, "Error"\n```\n=>\n```python\nraise NameError("Error")\n```\n\nor change\n```python\nraise NameError, "Error", some_traceback\n```\n=>\n```python\nraise NameError("Error")\n\ne = NameError("Error")\ne.__traceback__ = some_traceback\n```\n\nbacktick\n--------\n\n```python\nA = 2\nB = `A`\n```\n=>\n```python\nA = 2\nB = str(A)\n```\n\nOld ne operator\n---------------\n\n```python\nif 2 <> 3:\n```\n=>\n```python\nif 2 != 3:\n```\n\nOctal literal\n-------------\n\n```python\nos.chmod(foo, 0700)\n```\n=>\n```python\nos.chmod(foo, 0o700)\n```\n\nImport star module level\n------------------------\nDo not import \\*, be more specific. If it is impossible, import it in the top level (and suppress the pyflakes error F403.)\n```python\ndef coords(angle, distance):\n """Function coords"""\n from math import *\n return distance * cos(angle), distance * sin(angle)\n```\n=>\n```python\nfrom math import * # noqa: F403\ndef coords(angle, distance):\n """Function coords"""\n return distance * cos(angle), distance * sin(angle)\n```\n\nRaising string\n--------------\n```python\nraise ValueError, \'message\'\n```\n=>\n```python\nraise ValueError(\'message\')\n```\n\nIndexing exception\n------------------\n```python\nexcept IndexError as err:\n err[0]\n```\n=>\n```python\nexcept IndexError as err:\n IndexError.args[0]\n```\n\nturning off these errors\n-------------------------\n\nIf in any of these cases you think: yes, I really needed to do this,\nI\'m monkeypatching things, I\'m adding extra functionality that does indeed have an extra(default) paramenter, etc, etc\nyou can let pylint know to ignore this error in this one specific block of code\nby adding e.g. the comment `# pylint: disable=`\n\n```python\nclass Something(object):\n def dosomething(self, some, thing):\n # do something\n\nclass MyFancyThing(SomeThing):\n # pylint: disable=arguments-differ\n def dosomething(self, some, thing, fancy=None):\n # do something fancy\n```\n\nFull list with all codes is available at http://pylint-messages.wikidot.com/all-codes\n\nAuto-generated `Jenkinsfile` / `tox.ini`\n========================================\n\n`vsc-install` has support for auto-generating the `Jenkinsfile` (and accompanying `tox.ini`), via:\n\n python -m vsc.install.ci\n\nFailing check on (contents of) `Jenkinsfile` or `tox.ini`\n---------------------------------------------------------\n\nThere are dedicated tests that check whether the `Jenkinsfile` and `tox.ini` files were auto-generated\nby `vsc-install`.\n\nTo fix the tests, simply run `python -m vsc.install.ci` using the latest version of `vsc-install`\nto re-generate `Jenkinsfile` and `tox.ini`, and then commit & push the changes.\n\nIf the contents of the file that is auto-generated by the latest version of `vsc-install` is incorrect\nfor whatever reason, you can temporarily bypass the failing test by adding an a file named `Jenkinsfile.NOT_AUTOGENERATED_YET` or `tox.ini.NOT_AUTOGENERATED_YET`.\n\nThe file **must** contain the URL of a vsc-install issue, created via via https://github.com/hpcugent/vsc-install/issues/new, where the incorrectly generated file is reported.\n\nExample:\n\n echo "see https://github.com/hpcugent/vsc-install/issues/1234 for more info" > Jenkinsfile.NOT_AUTOGENERATED_YET\n\n\nRequiring JIRA issue ref in PR title\n------------------------------------\n\nTo also include a check in the `Jenkinsfile` for having a JIRA issue ref (like `[HPC-1234]`) in the pull request title,\nadd a configuration file for `python -m vsc.install.ci` named `vsc-ci.ini` like this into the repository:\n\n```ini\n[vsc-ci]\njira_issue_id_in_pr_title=1\n```\n\nRunning shellcheck\n------------------\n\nTo also run `shellcheck` in the generated `Jenkinsfile`, specify this via a `vsc-ci.ini` configuration file:\n\n```ini\n[vsc-ci]\nrun_shellcheck=1\n```\n\nAdding additional test commands to Jenkinsfile\n----------------------------------------------\n\nIf additional custom test commands (other than `shellcheck`) need to be run by the `Jenkinsfile`,\nyou can speicfy this in `vsc-ci.ini` via `additional_test_commands`.\n\nTo add a single custom test command:\n\n```ini\n[vsc-ci]\nadditional_test_commands=./more_test.sh\n```\n\nTo add multiple test commands:\n\n```ini\n[vsc-ci]\nadditional_test_commands=\n first-test-cmd\n second-test-cmd\n third-test-cmd\n```\n\nOverriding install location of scripts\n--------------------------------------\n\nIn some repositories we specify a system-wide install location for scripts via `setup.cfg`\n(see for example the `icinga-checks` repository), which causes problems when installing `vsc-install` in the tox\nenvironment.\n\nTo override the installation prefix for scripts (only in the tox environment where the tests are run),\nspecify this via a `vsc-ci.ini` configuration file:\n\n```ini\n[vsc-ci]\ninstall_scripts_prefix_override=1\n```\n\nUse \'easy_install\' to install tox\n---------------------------------\n\nFor legacy reasons easy_install is still supported. If you still need it you can enable it (not recommended):\n\n```ini\n[vsc-ci]\neasy_install_tox=1\n```\n\nAvoid running ``pip install`` in repo checkout\n----------------------------------------------\n\nFor some repositories, running ``pip install`` to install ``tox`` from the checked out repository is problematic,\nbecause of the ``setup.cfg`` containing things that should not be picked up by ``pip``.\n\nFor those repositories, you can specify that the installation commands in the ``Jenkinsfile`` should be\nrun from ``$HOME``, via:\n\n```ini\n[vsc-ci]\nhome_install=1\n```\n\nLeveraging system (Python) packages\n-----------------------------------\n\nIf a repository requires Python packages as dependencies that are installed as OS packages (for example, ``pyslurm``),\ntox must be configured to inherit these packages in the test environment. This can be enabled via:\n\n```ini\n[vsc-ci]\ninherit_site_packages=1\n```\n\nPre-installing dependencies before running tests\n------------------------------------------------\n\nAlthough ``vsc-install`` will automatically install all dependencies listed in ``setup.py`` prior to running the\ntests, there are cases where this doesn\'t work out as expected.\nSome Python packages only support being installed with ``pip install`` (for example because they use a namespace\nthat is spread across multiple different Python packages, like ``fs`` and ``fs.sshfs``).\n\nYou can specify Python packages that should be installed (with ``pip install``) before running the tests via\n``pip_install_test_deps`` in ``vsc-ci.ini``:\n\n```ini\n[vsc-ci]\npip_install_test_deps=\n foo\n bar<1.0\n```\n\nThis results in corresponding ``pip install`` commands being added to the ``commands_pre`` section in ``tox.ini``:\n\n```ini\n[testenv]\ncommands_pre =\n pip install \'foo\'\n pip install \'bar<1.0\'\n pip install \'setuptools<42.0\'\n python -m easy_install -U vsc-install\n```\n', 'long_description_content_type': 'text/markdown', 'scripts': ['bin/python-noenv.sh', 'bin/python-stripped-env'], 'namespace_packages': ['vsc'], 'version': '0.21.0', 'author': 'Stijn De Weirdt;Andy Georges;Jens Timmerman', 'author_email': 'stijn.deweirdt@ugent.be, andy.georges@ugent.be, jens.timmerman@ugent.be', 'maintainer': 'Stijn De Weirdt;Andy Georges;Jens Timmerman', 'maintainer_email': 'stijn.deweirdt@ugent.be, andy.georges@ugent.be, jens.timmerman@ugent.be', 'name': 'vsc-install'}/usr/local/lib/python3.11/dist-packages/setuptools/dist.py:476: SetuptoolsDeprecationWarning: Invalid dash-separated options 2024-06-27T09:34:04,733 !! 2024-06-27T09:34:04,735 ******************************************************************************** 2024-06-27T09:34:04,735 Usage of dash-separated 'description-file' will not be supported in future 2024-06-27T09:34:04,736 versions. Please use the underscore name 'description_file' instead. 2024-06-27T09:34:04,737 By 2024-Sep-26, you need to update your project and remove deprecated calls 2024-06-27T09:34:04,737 or your builds will no longer be supported. 2024-06-27T09:34:04,738 See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. 2024-06-27T09:34:04,739 ******************************************************************************** 2024-06-27T09:34:04,740 !! 2024-06-27T09:34:04,741 opt = self.warn_dash_deprecation(opt, section) 2024-06-27T09:34:04,746 /usr/local/lib/python3.11/dist-packages/setuptools/__init__.py:80: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. 2024-06-27T09:34:04,746 !! 2024-06-27T09:34:04,748 ******************************************************************************** 2024-06-27T09:34:04,748 Requirements should be satisfied by a PEP 517 installer. 2024-06-27T09:34:04,749 If you are using pip, you can try `pip install --use-pep517`. 2024-06-27T09:34:04,749 ******************************************************************************** 2024-06-27T09:34:04,750 !! 2024-06-27T09:34:04,751 dist.fetch_build_eggs(dist.setup_requires) 2024-06-27T09:34:05,085 /usr/local/lib/python3.11/dist-packages/setuptools/dist.py:679: SetuptoolsDeprecationWarning: The namespace_packages parameter is deprecated. 2024-06-27T09:34:05,085 !! 2024-06-27T09:34:05,086 ******************************************************************************** 2024-06-27T09:34:05,087 Please replace its usage with implicit namespaces (PEP 420). 2024-06-27T09:34:05,088 See https://setuptools.pypa.io/en/latest/references/keywords.html#keyword-namespace-packages for details. 2024-06-27T09:34:05,089 ******************************************************************************** 2024-06-27T09:34:05,090 !! 2024-06-27T09:34:05,091 ep.load()(self, ep.name, value) 2024-06-27T09:34:05,099 running egg_info 2024-06-27T09:34:05,102 creating /tmp/pip-pip-egg-info-7c2uyabx/vsc_install.egg-info 2024-06-27T09:34:05,134 writing manifest file '/tmp/pip-pip-egg-info-7c2uyabx/vsc_install.egg-info/SOURCES.txt' 2024-06-27T09:34:05,240 writing manifest file '/tmp/pip-pip-egg-info-7c2uyabx/vsc_install.egg-info/SOURCES.txt' 2024-06-27T09:34:05,368 Preparing metadata (setup.py): finished with status 'done' 2024-06-27T09:34:05,373 Source in /tmp/pip-wheel-jrf792pc/vsc-install_dbe949f0f78c4a09b3f61727347c7461 has version 0.21.0, which satisfies requirement vsc-install==0.21.0 from https://files.pythonhosted.org/packages/9f/3a/0bc31269a5effab0800f76d6ea0c82db1fdf2c72811ef1fc7a3e9be0ac94/vsc_install-0.21.0.tar.gz 2024-06-27T09:34:05,374 Removed vsc-install==0.21.0 from https://files.pythonhosted.org/packages/9f/3a/0bc31269a5effab0800f76d6ea0c82db1fdf2c72811ef1fc7a3e9be0ac94/vsc_install-0.21.0.tar.gz from build tracker '/tmp/pip-build-tracker-6hzeunjl' 2024-06-27T09:34:05,381 Created temporary directory: /tmp/pip-unpack-z8bsyinh 2024-06-27T09:34:05,382 Created temporary directory: /tmp/pip-unpack-kkdmgyqt 2024-06-27T09:34:05,389 Building wheels for collected packages: vsc-install 2024-06-27T09:34:05,393 Created temporary directory: /tmp/pip-wheel-fp41qprh 2024-06-27T09:34:05,394 Building wheel for vsc-install (setup.py): started 2024-06-27T09:34:05,395 Destination directory: /tmp/pip-wheel-fp41qprh 2024-06-27T09:34:05,396 Running command python setup.py bdist_wheel 2024-06-27T09:34:06,140 /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/log.py:45: UserWarning: Logging class to prefix the message with a human readable log level 2024-06-27T09:34:06,140 warnings.warn(Log.__doc__) # avoid DeprecationWarning to ensure warn is shown 2024-06-27T09:34:06,159 new target {'cmdclass': {'bdist_rpm': , 'egg_info': , 'install_scripts': , 'sdist': , 'test': , 'vsc_release': }, 'command_packages': ['vsc.install.shared_setup', 'shared_setup_dist_only', 'setuptools.command', 'distutils.command'], 'download_url': 'Author: Stijn De Weirdt;Andy Georges;Jens Timmerman', 'package_dir': {'': 'lib'}, 'setup_requires': ['setuptools'], 'test_suite': 'test', 'url': 'https://github.com/hpcugent/vsc-install', 'dependency_links': [], 'install_requires': ['setuptools < 54.0', 'mock'], 'tests_require': ['mock', 'pylint < 3', 'prospector < 1.10.4', 'pylint-plugin-utils < 0.8', 'pylint-django < 2.5.4', 'astroid <= 2.17.0-dev0', 'pycodestyle < 2.10', 'requirementslib < 2.3.1'], 'packages': dict_keys(['vsc', 'vsc.install']), 'classifiers': ['License :: OSI Approved :: GNU Lesser General Public License v2 or later (LGPLv2+)'], 'license': 'LGPLv2+', 'description': "vsc-install provides shared setuptools functions and classes for python libraries developed by UGent's HPC group", 'long_description': 'Description\n===========\nvsc-install provides shared setuptools functions and classes for python libraries developed by UGent\'s HPC group\n\nCommon pitfalls\n=========\nbdist_rpm will fail if your install_requires = \'setuptools\' because it will fail to find a setuptools rpm.\n```\nexport VSC_RPM_PYTHON=1\n```\nwill make sure the `python-` prefix is added to the packages in install_requires for building RPM\'s so python-setuptools will be used.\n\nAdd tests\n=========\n\nTest are python modules in the `test` directory which have subclass of `TestCase`\nand at least one method that has a name starting with `test_`\n\nYou are advised to use\n```python\nfrom vsc.install.testing import TestCase\n```\n(instead of basic `TestCase` from `unittest`).\n\nAnd any `__main__` or `suite()` is not needed (anymore).\n\nInitialise the test directory with\n\n```bash\nmkdir -p test\necho \'\' > test/__init__.py\necho \'from vsc.install.commontest import CommonTest\' > test/00-import.py\n```\n\nWhen the tests are run, `test`, `lib` and `bin` (if relevant) are added to `sys.path`,\nso no need to do so in the tets modules.\n\nRun tests\n=========\n\n```bash\npython setup.py test\n```\n\nFilter tests with `-F` (test module names) and `-f` (test method names)\n\nSee also\n\n```bash\npython setup.py test --help\n```\n\nThe dependencies are installed automatically in the `.eggs` directory. It will first try\n`github.ugent.be` and then `github.com` to install them. The same method is used as through\nwhich the original repository was cloned (http, ssh, ...). In case you need private\ndependencies, always clone with ssh.\n\nIn case following error occurs, it means there is a test module `XYZ` that cannot be imported.\n\n```txt\nFile "setup.py", line 499, in loadTestsFromModule\n testsuites = ScanningLoader.loadTestsFromModule(self, module)\nFile "build/bdist.linux-x86_64/egg/setuptools/command/test.py", line 37, in loadTestsFromModule\nFile "/usr/lib64/python2.7/unittest/loader.py", line 100, in loadTestsFromName\n parent, obj = obj, getattr(obj, part)\nAttributeError: \'module\' object has no attribute \'XYZ\'\n```\n\nYou can try get the actual import error for fixing the issue with\n```bash\npython -c \'import sys;sys.path.insert(0, "test");import XYZ;\'\n```\n\nFix failing tests\n=================\n\n* Missing / incorrect `LICENSE`\n\n * Copy the appropirate license file under `known_licenses` in the project directory and name the file `LICENSE`\n\n* Missing `README.md`\n\n * Create a `README.md` file with at least a `Description` section\n\n* Fix license headers as described in https://github.com/hpcugent/vsc-install/blob/master/lib/vsc/install/headers.py\n\n ```\n cd \n REPO_BASE_DIR=$PWD python -m vsc.install.headers path/to/file script_or_not\n ```\n\n Fix them all at once using find\n\n ```\n find ./{lib,test} -type f -name \'*.py\' | REPO_BASE_DIR=$PWD xargs -I \'{}\' python -m vsc.install.headers \'{}\'\n find ./bin -type f -name \'*.py\' | REPO_BASE_DIR=$PWD xargs -I \'{}\' python -m vsc.install.headers \'{}\' 1\n ```\n\n Do not forget to check the diff.\n Modules/scripts without docstring (or magic comment \'### END OF HEADER\') (incl. test modules)\n will get correct header appended to existing one. Add a docstring (or magic comment) to resolve this.\n* Python scripts (i.e. with a python shebang and installed as scripts in setup) have to use `#!/usr/bin/env python` as shebang\n* Remove any `build_rpms_settings.sh` leftovers\n* The `TARGET` dict in `setup.py` should be minimal unless you really know what you are doing (i.e. if it is truly different from defaults)\n\n * Remove `name`, `scripts`, ...\n\n* `Exception: vsc namespace packages do not allow non-shared namespace`\n\n * Add to the `__init__.py`\n\n ```python\n """\n Allow other packages to extend this namespace, zip safe setuptools style\n """\n import pkg_resources\n pkg_resources.declare_namespace(__name__)\n ```\n\n\nbare-except\n-----------\n```python\ntry:\n # something\nexcept:\n```\nThis is bad, because this except will also catch sys.exit() or Keyboardinterupts, something you\ntypically do not want, if you catch these the program will be in a weird state and then continue on,\nwhilst the person who just pressed ctrl+c is wondering what is going on and why it is not stopping.\n\nso at the very least make this\nexcept Exception (which doesn\'t catch sys.exit and KeyboardInterupt)\nand it would be appreciated if you could actually figure out what exceptions to expect and only catch those\nand let your program crash if something you did not intend happens\nbecause it helps developers catch weird errors on their side better.\n\nif you do something like\n```python\ntry:\n Path(int(somestring)).write_text(\'important data\')\nexcept Exception:\n pass # if somestring is not an integer, we didn\'t need to write anyway, but otherwise we do\n```\nbecause you know sometimes this string does not contain an integer, so the int() call can fail\nyou should really only catch ValueError, because this will also fail when your disk is full, or you don\'t have permissions\nor xxx other reasons, and the important data will not be written out and nobody will notice anything!\n\n\n\nif not \'a\' in somelist -> if \'a\' not in somelist\n-------------------------------------------------\n\nthis isn\'t that big of a deal, but if everyone is consistent it\'s less likely to introduce bugs when a not is added or removed where it didn\'t need to.\nAlso helps code review, not in reads better, like english.\n\n\narguments-differ\n-----------------\n\nthis will give you errors if you override a function of a superclass but don\'t use the same amount of arguments,\nusing less will surely give you errors, so the linter catches this for you now\n\nunused-argument\n-----------------\nif you have a function definition witch accepts an argument that is never used in the function body this will now give an error.\nclean up your function definition, or fix the error where you actually do need to take this argument into account\n\nunused-variable\n----------------\ndefining a variable and then not using it anymore smells bad, why did you do that?\nsometimes you do things like\n```python\nout, exit_code = run_command(something)\n```\nbut you are not interested in the out, only in the exit code,\nin this case, write\n```python\n_, exit_code = run_command(something)\n```\n\nusing _ as a variable name lets pylint and other readers know you do not intend to use that output in the first place.\n\n\nreimported\n-------------\nwhen you re import a name somewhere else,\nusually this is just an import to much, or 2 imports with the same name, pay attention.\n```python\nimport six\nfrom django import six\n```\n=>\n```python\nimport six\nfrom django import six as django_six\n```\n\nredefinition of unused name\n----------------------------\nthis usually also points to something you did not expect\n```python\nfrom vsc.accountpageclient import VscGroup\n\n\nclass VscGroup(object):\n pass\n```\n\n=> do you need the import? use import as\ndid you mean to use the same name? ...\n\nRedefined builtin\n-----------------\nuse different name, for example change\n\n```python\ndef filter(b_b):\n """Function filter"""\n return b_b\n```\n=>\n```python\ndef new_filter(b_b):\n """Function filter"""\n return b_b\n```\n\nlogging-not-lazy\n----------------\n\nDon\'t use string interpolation when logging if not needed:\n\n```python\nimport logging\nname = \'world\'\nprogram =\'python\'\nlogging.info(\'Hello %s! This is %s.\' % (name, program))\n```\n=>\n```python\nimport logging\nname = \'world\'\nprogram =\'python\'\nlogging.info(\'Hello %s! This is %s.\', name, program)\n```\n\n\nFix Python 3 failing tests\n==========================\n\n* We try to follow https://docs.python.org/3/howto/pyporting.html\n* some useful info can be found here as well https://portingguide.readthedocs.io/en/latest/index.html\n\nunpacking-in-except / redefine-in-handler\n-----------------------------------------\n\nMultiple exception have to be grouped in a tuple like\n\n```python\n ...\nexcept (ExceptionOne, ExceptionTwo) ...\n ...\n```\n\n(espcially when used like `except A, B:` which should be `except (A, B):`.\n\nOld raise syntax\n----------------\nPython 2’s **raise** statement was designed at a time when exceptions weren’t classes, and an exception’s _type_, _value_, and _traceback_ components were three separate objects. In Python 3, one single object includes all information about an exception.\n\n```python\nraise NameError, "Error"\n```\n=>\n```python\nraise NameError("Error")\n```\n\nor change\n```python\nraise NameError, "Error", some_traceback\n```\n=>\n```python\nraise NameError("Error")\n\ne = NameError("Error")\ne.__traceback__ = some_traceback\n```\n\nbacktick\n--------\n\n```python\nA = 2\nB = `A`\n```\n=>\n```python\nA = 2\nB = str(A)\n```\n\nOld ne operator\n---------------\n\n```python\nif 2 <> 3:\n```\n=>\n```python\nif 2 != 3:\n```\n\nOctal literal\n-------------\n\n```python\nos.chmod(foo, 0700)\n```\n=>\n```python\nos.chmod(foo, 0o700)\n```\n\nImport star module level\n------------------------\nDo not import \\*, be more specific. If it is impossible, import it in the top level (and suppress the pyflakes error F403.)\n```python\ndef coords(angle, distance):\n """Function coords"""\n from math import *\n return distance * cos(angle), distance * sin(angle)\n```\n=>\n```python\nfrom math import * # noqa: F403\ndef coords(angle, distance):\n """Function coords"""\n return distance * cos(angle), distance * sin(angle)\n```\n\nRaising string\n--------------\n```python\nraise ValueError, \'message\'\n```\n=>\n```python\nraise ValueError(\'message\')\n```\n\nIndexing exception\n------------------\n```python\nexcept IndexError as err:\n err[0]\n```\n=>\n```python\nexcept IndexError as err:\n IndexError.args[0]\n```\n\nturning off these errors\n-------------------------\n\nIf in any of these cases you think: yes, I really needed to do this,\nI\'m monkeypatching things, I\'m adding extra functionality that does indeed have an extra(default) paramenter, etc, etc\nyou can let pylint know to ignore this error in this one specific block of code\nby adding e.g. the comment `# pylint: disable=`\n\n```python\nclass Something(object):\n def dosomething(self, some, thing):\n # do something\n\nclass MyFancyThing(SomeThing):\n # pylint: disable=arguments-differ\n def dosomething(self, some, thing, fancy=None):\n # do something fancy\n```\n\nFull list with all codes is available at http://pylint-messages.wikidot.com/all-codes\n\nAuto-generated `Jenkinsfile` / `tox.ini`\n========================================\n\n`vsc-install` has support for auto-generating the `Jenkinsfile` (and accompanying `tox.ini`), via:\n\n python -m vsc.install.ci\n\nFailing check on (contents of) `Jenkinsfile` or `tox.ini`\n---------------------------------------------------------\n\nThere are dedicated tests that check whether the `Jenkinsfile` and `tox.ini` files were auto-generated\nby `vsc-install`.\n\nTo fix the tests, simply run `python -m vsc.install.ci` using the latest version of `vsc-install`\nto re-generate `Jenkinsfile` and `tox.ini`, and then commit & push the changes.\n\nIf the contents of the file that is auto-generated by the latest version of `vsc-install` is incorrect\nfor whatever reason, you can temporarily bypass the failing test by adding an a file named `Jenkinsfile.NOT_AUTOGENERATED_YET` or `tox.ini.NOT_AUTOGENERATED_YET`.\n\nThe file **must** contain the URL of a vsc-install issue, created via via https://github.com/hpcugent/vsc-install/issues/new, where the incorrectly generated file is reported.\n\nExample:\n\n echo "see https://github.com/hpcugent/vsc-install/issues/1234 for more info" > Jenkinsfile.NOT_AUTOGENERATED_YET\n\n\nRequiring JIRA issue ref in PR title\n------------------------------------\n\nTo also include a check in the `Jenkinsfile` for having a JIRA issue ref (like `[HPC-1234]`) in the pull request title,\nadd a configuration file for `python -m vsc.install.ci` named `vsc-ci.ini` like this into the repository:\n\n```ini\n[vsc-ci]\njira_issue_id_in_pr_title=1\n```\n\nRunning shellcheck\n------------------\n\nTo also run `shellcheck` in the generated `Jenkinsfile`, specify this via a `vsc-ci.ini` configuration file:\n\n```ini\n[vsc-ci]\nrun_shellcheck=1\n```\n\nAdding additional test commands to Jenkinsfile\n----------------------------------------------\n\nIf additional custom test commands (other than `shellcheck`) need to be run by the `Jenkinsfile`,\nyou can speicfy this in `vsc-ci.ini` via `additional_test_commands`.\n\nTo add a single custom test command:\n\n```ini\n[vsc-ci]\nadditional_test_commands=./more_test.sh\n```\n\nTo add multiple test commands:\n\n```ini\n[vsc-ci]\nadditional_test_commands=\n first-test-cmd\n second-test-cmd\n third-test-cmd\n```\n\nOverriding install location of scripts\n--------------------------------------\n\nIn some repositories we specify a system-wide install location for scripts via `setup.cfg`\n(see for example the `icinga-checks` repository), which causes problems when installing `vsc-install` in the tox\nenvironment.\n\nTo override the installation prefix for scripts (only in the tox environment where the tests are run),\nspecify this via a `vsc-ci.ini` configuration file:\n\n```ini\n[vsc-ci]\ninstall_scripts_prefix_override=1\n```\n\nUse \'easy_install\' to install tox\n---------------------------------\n\nFor legacy reasons easy_install is still supported. If you still need it you can enable it (not recommended):\n\n```ini\n[vsc-ci]\neasy_install_tox=1\n```\n\nAvoid running ``pip install`` in repo checkout\n----------------------------------------------\n\nFor some repositories, running ``pip install`` to install ``tox`` from the checked out repository is problematic,\nbecause of the ``setup.cfg`` containing things that should not be picked up by ``pip``.\n\nFor those repositories, you can specify that the installation commands in the ``Jenkinsfile`` should be\nrun from ``$HOME``, via:\n\n```ini\n[vsc-ci]\nhome_install=1\n```\n\nLeveraging system (Python) packages\n-----------------------------------\n\nIf a repository requires Python packages as dependencies that are installed as OS packages (for example, ``pyslurm``),\ntox must be configured to inherit these packages in the test environment. This can be enabled via:\n\n```ini\n[vsc-ci]\ninherit_site_packages=1\n```\n\nPre-installing dependencies before running tests\n------------------------------------------------\n\nAlthough ``vsc-install`` will automatically install all dependencies listed in ``setup.py`` prior to running the\ntests, there are cases where this doesn\'t work out as expected.\nSome Python packages only support being installed with ``pip install`` (for example because they use a namespace\nthat is spread across multiple different Python packages, like ``fs`` and ``fs.sshfs``).\n\nYou can specify Python packages that should be installed (with ``pip install``) before running the tests via\n``pip_install_test_deps`` in ``vsc-ci.ini``:\n\n```ini\n[vsc-ci]\npip_install_test_deps=\n foo\n bar<1.0\n```\n\nThis results in corresponding ``pip install`` commands being added to the ``commands_pre`` section in ``tox.ini``:\n\n```ini\n[testenv]\ncommands_pre =\n pip install \'foo\'\n pip install \'bar<1.0\'\n pip install \'setuptools<42.0\'\n python -m easy_install -U vsc-install\n```\n', 'long_description_content_type': 'text/markdown', 'scripts': ['bin/python-noenv.sh', 'bin/python-stripped-env'], 'namespace_packages': ['vsc'], 'version': '0.21.0', 'author': 'Stijn De Weirdt;Andy Georges;Jens Timmerman', 'author_email': 'stijn.deweirdt@ugent.be, andy.georges@ugent.be, jens.timmerman@ugent.be', 'maintainer': 'Stijn De Weirdt;Andy Georges;Jens Timmerman', 'maintainer_email': 'stijn.deweirdt@ugent.be, andy.georges@ugent.be, jens.timmerman@ugent.be', 'name': 'vsc-install'} 2024-06-27T09:34:06,198 /usr/local/lib/python3.11/dist-packages/setuptools/dist.py:476: SetuptoolsDeprecationWarning: Invalid dash-separated options 2024-06-27T09:34:06,199 !! 2024-06-27T09:34:06,200 ******************************************************************************** 2024-06-27T09:34:06,200 Usage of dash-separated 'description-file' will not be supported in future 2024-06-27T09:34:06,201 versions. Please use the underscore name 'description_file' instead. 2024-06-27T09:34:06,202 By 2024-Sep-26, you need to update your project and remove deprecated calls 2024-06-27T09:34:06,203 or your builds will no longer be supported. 2024-06-27T09:34:06,204 See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. 2024-06-27T09:34:06,204 ******************************************************************************** 2024-06-27T09:34:06,206 !! 2024-06-27T09:34:06,206 opt = self.warn_dash_deprecation(opt, section) 2024-06-27T09:34:06,210 /usr/local/lib/python3.11/dist-packages/setuptools/__init__.py:80: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. 2024-06-27T09:34:06,210 !! 2024-06-27T09:34:06,212 ******************************************************************************** 2024-06-27T09:34:06,212 Requirements should be satisfied by a PEP 517 installer. 2024-06-27T09:34:06,213 If you are using pip, you can try `pip install --use-pep517`. 2024-06-27T09:34:06,214 ******************************************************************************** 2024-06-27T09:34:06,215 !! 2024-06-27T09:34:06,215 dist.fetch_build_eggs(dist.setup_requires) 2024-06-27T09:34:06,549 /usr/local/lib/python3.11/dist-packages/setuptools/dist.py:679: SetuptoolsDeprecationWarning: The namespace_packages parameter is deprecated. 2024-06-27T09:34:06,550 !! 2024-06-27T09:34:06,551 ******************************************************************************** 2024-06-27T09:34:06,551 Please replace its usage with implicit namespaces (PEP 420). 2024-06-27T09:34:06,552 See https://setuptools.pypa.io/en/latest/references/keywords.html#keyword-namespace-packages for details. 2024-06-27T09:34:06,552 ******************************************************************************** 2024-06-27T09:34:06,553 !! 2024-06-27T09:34:06,554 ep.load()(self, ep.name, value) 2024-06-27T09:34:06,587 running bdist_wheel 2024-06-27T09:34:06,684 running build 2024-06-27T09:34:06,684 running build_py 2024-06-27T09:34:06,709 creating build 2024-06-27T09:34:06,710 creating build/lib 2024-06-27T09:34:06,710 creating build/lib/vsc 2024-06-27T09:34:06,712 copying lib/vsc/__init__.py -> build/lib/vsc 2024-06-27T09:34:06,714 creating build/lib/vsc/install 2024-06-27T09:34:06,715 copying lib/vsc/install/testing.py -> build/lib/vsc/install 2024-06-27T09:34:06,718 copying lib/vsc/install/__init__.py -> build/lib/vsc/install 2024-06-27T09:34:06,720 copying lib/vsc/install/ci.py -> build/lib/vsc/install 2024-06-27T09:34:06,723 copying lib/vsc/install/commontest.py -> build/lib/vsc/install 2024-06-27T09:34:06,725 copying lib/vsc/install/shared_setup.py -> build/lib/vsc/install 2024-06-27T09:34:06,730 copying lib/vsc/install/headers.py -> build/lib/vsc/install 2024-06-27T09:34:06,732 copying lib/vsc/install/methodinspector.py -> build/lib/vsc/install 2024-06-27T09:34:06,736 running build_scripts 2024-06-27T09:34:06,737 creating build/scripts-3.11 2024-06-27T09:34:06,738 copying bin/python-noenv.sh -> build/scripts-3.11 2024-06-27T09:34:06,741 copying bin/python-stripped-env -> build/scripts-3.11 2024-06-27T09:34:06,742 changing mode of build/scripts-3.11/python-noenv.sh from 644 to 755 2024-06-27T09:34:06,768 /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. 2024-06-27T09:34:06,768 !! 2024-06-27T09:34:06,770 ******************************************************************************** 2024-06-27T09:34:06,770 Please avoid running ``setup.py`` directly. 2024-06-27T09:34:06,771 Instead, use pypa/build, pypa/installer or other 2024-06-27T09:34:06,772 standards-based tools. 2024-06-27T09:34:06,773 See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. 2024-06-27T09:34:06,774 ******************************************************************************** 2024-06-27T09:34:06,775 !! 2024-06-27T09:34:06,776 self.initialize_options() 2024-06-27T09:34:06,776 installing to build/bdist.linux-armv7l/wheel 2024-06-27T09:34:06,777 running install 2024-06-27T09:34:06,793 running install_lib 2024-06-27T09:34:06,823 WARN: Skipping installation of build/bdist.linux-armv7l/wheel/vsc/__init__.py (namespace package) 2024-06-27T09:34:06,843 running install_egg_info 2024-06-27T09:34:06,871 running egg_info 2024-06-27T09:34:06,872 creating lib/vsc_install.egg-info 2024-06-27T09:34:06,903 writing manifest file 'lib/vsc_install.egg-info/SOURCES.txt' 2024-06-27T09:34:06,934 writing manifest file 'lib/vsc_install.egg-info/SOURCES.txt' 2024-06-27T09:34:06,936 Copying lib/vsc_install.egg-info to build/bdist.linux-armv7l/wheel/vsc_install-0.21.0-py3.11.egg-info 2024-06-27T09:34:06,950 running install_scripts 2024-06-27T09:34:06,951 creating build/bdist.linux-armv7l/wheel/vsc_install-0.21.0.data 2024-06-27T09:34:06,952 creating build/bdist.linux-armv7l/wheel/vsc_install-0.21.0.data/scripts 2024-06-27T09:34:06,953 copying build/scripts-3.11/python-noenv.sh -> build/bdist.linux-armv7l/wheel/vsc_install-0.21.0.data/scripts 2024-06-27T09:34:06,955 copying build/scripts-3.11/python-stripped-env -> build/bdist.linux-armv7l/wheel/vsc_install-0.21.0.data/scripts 2024-06-27T09:34:06,956 changing mode of build/bdist.linux-armv7l/wheel/vsc_install-0.21.0.data/scripts/python-noenv.sh to 755 2024-06-27T09:34:06,957 changing mode of build/bdist.linux-armv7l/wheel/vsc_install-0.21.0.data/scripts/python-stripped-env to 755 2024-06-27T09:34:06,976 creating build/bdist.linux-armv7l/wheel/vsc_install-0.21.0.dist-info/WHEEL 2024-06-27T09:34:06,978 creating '/tmp/pip-wheel-fp41qprh/vsc_install-0.21.0-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2024-06-27T09:34:06,980 adding 'vsc_install-0.21.0-py3.11-nspkg.pth' 2024-06-27T09:34:06,982 adding 'vsc/install/__init__.py' 2024-06-27T09:34:06,984 adding 'vsc/install/ci.py' 2024-06-27T09:34:06,987 adding 'vsc/install/commontest.py' 2024-06-27T09:34:06,989 adding 'vsc/install/headers.py' 2024-06-27T09:34:06,990 adding 'vsc/install/methodinspector.py' 2024-06-27T09:34:07,000 adding 'vsc/install/shared_setup.py' 2024-06-27T09:34:07,002 adding 'vsc/install/testing.py' 2024-06-27T09:34:07,005 adding 'vsc_install-0.21.0.data/scripts/python-noenv' 2024-06-27T09:34:07,006 adding 'vsc_install-0.21.0.data/scripts/python-stripped-env' 2024-06-27T09:34:07,011 adding 'vsc_install-0.21.0.dist-info/LICENSE' 2024-06-27T09:34:07,013 adding 'vsc_install-0.21.0.dist-info/METADATA' 2024-06-27T09:34:07,014 adding 'vsc_install-0.21.0.dist-info/WHEEL' 2024-06-27T09:34:07,015 adding 'vsc_install-0.21.0.dist-info/namespace_packages.txt' 2024-06-27T09:34:07,016 adding 'vsc_install-0.21.0.dist-info/top_level.txt' 2024-06-27T09:34:07,017 adding 'vsc_install-0.21.0.dist-info/RECORD' 2024-06-27T09:34:07,019 removing build/bdist.linux-armv7l/wheel 2024-06-27T09:34:07,154 Building wheel for vsc-install (setup.py): finished with status 'done' 2024-06-27T09:34:07,157 Created wheel for vsc-install: filename=vsc_install-0.21.0-py3-none-any.whl size=61603 sha256=abc9ee382561a923fb421021d8a9ab799adea05f3bdd24a3784bd2a0b58687b6 2024-06-27T09:34:07,158 Stored in directory: /tmp/pip-ephem-wheel-cache-v24us8m2/wheels/0f/60/ab/baa7e5977694d72cd5b90ec335fa58f96a8aa349c1db7f6ed2 2024-06-27T09:34:07,173 Successfully built vsc-install 2024-06-27T09:34:07,177 Removed build tracker: '/tmp/pip-build-tracker-6hzeunjl'