2024-06-28T12:27:40,227 Created temporary directory: /tmp/pip-build-tracker-ge8t7lam 2024-06-28T12:27:40,228 Initialized build tracking at /tmp/pip-build-tracker-ge8t7lam 2024-06-28T12:27:40,229 Created build tracker: /tmp/pip-build-tracker-ge8t7lam 2024-06-28T12:27:40,229 Entered build tracker: /tmp/pip-build-tracker-ge8t7lam 2024-06-28T12:27:40,230 Created temporary directory: /tmp/pip-wheel-8wtjwaji 2024-06-28T12:27:40,233 Created temporary directory: /tmp/pip-ephem-wheel-cache-k59o8y_5 2024-06-28T12:27:40,258 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2024-06-28T12:27:40,262 2 location(s) to search for versions of galaxy-data: 2024-06-28T12:27:40,262 * https://pypi.org/simple/galaxy-data/ 2024-06-28T12:27:40,262 * https://www.piwheels.org/simple/galaxy-data/ 2024-06-28T12:27:40,263 Fetching project page and analyzing links: https://pypi.org/simple/galaxy-data/ 2024-06-28T12:27:40,263 Getting page https://pypi.org/simple/galaxy-data/ 2024-06-28T12:27:40,265 Found index url https://pypi.org/simple/ 2024-06-28T12:27:40,477 Fetched page https://pypi.org/simple/galaxy-data/ as application/vnd.pypi.simple.v1+json 2024-06-28T12:27:40,487 Found link https://files.pythonhosted.org/packages/1f/fa/d8f43cf473dabba250bd9d5fed96b1a5acc89517739bc26b91489f61fa57/galaxy-data-19.9.0.dev0.tar.gz (from https://pypi.org/simple/galaxy-data/), version: 19.9.0.dev0 2024-06-28T12:27:40,488 Skipping link: No binaries permitted for galaxy-data: https://files.pythonhosted.org/packages/42/ed/b96a4bff7db2009e0aaf27fa1b4e85c7dc2d247792888f0ba985a77da73c/galaxy_data-19.9.0.dev0-py2-none-any.whl (from https://pypi.org/simple/galaxy-data/) 2024-06-28T12:27:40,488 Found link https://files.pythonhosted.org/packages/6e/e3/475e99a40432070b9490ccf497bcfb330899422c99301b23609eb73a04c2/galaxy-data-19.9.0.dev1.tar.gz (from https://pypi.org/simple/galaxy-data/), version: 19.9.0.dev1 2024-06-28T12:27:40,489 Skipping link: No binaries permitted for 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https://files.pythonhosted.org/packages/5f/6c/f5b407cdf499231ed506bb3cf63fbb71bf9b2bb54a235ac175c0ca635dc5/galaxy-data-23.0.5.tar.gz (from https://pypi.org/simple/galaxy-data/) (requires-python:>=3.7), version: 23.0.5 2024-06-28T12:27:40,508 Skipping link: No binaries permitted for galaxy-data: https://files.pythonhosted.org/packages/61/f5/15ef661e4e484bc2f1191261d618892b1f710cc795045da3aed37a0c5bec/galaxy_data-23.0.5-py3-none-any.whl (from https://pypi.org/simple/galaxy-data/) (requires-python:>=3.7) 2024-06-28T12:27:40,509 Found link https://files.pythonhosted.org/packages/60/bc/4c89e828ee5cecd30763f2d6b48a345393c43aa37cecfb02e7ee2647c9c8/galaxy-data-23.0.6.tar.gz (from https://pypi.org/simple/galaxy-data/) (requires-python:>=3.7), version: 23.0.6 2024-06-28T12:27:40,510 Skipping link: No binaries permitted for galaxy-data: https://files.pythonhosted.org/packages/97/d4/34dc616c07622d2f18955df9eedaedf75ffe1b54ee40a2fa12e2899b7347/galaxy_data-23.0.6-py3-none-any.whl (from https://pypi.org/simple/galaxy-data/) (requires-python:>=3.7) 2024-06-28T12:27:40,511 Found link https://files.pythonhosted.org/packages/c7/c1/934150514c5aa9103f1912d3875c0633d2d220c30fb5c81e0d91feefff44/galaxy-data-23.1.dev0.tar.gz (from https://pypi.org/simple/galaxy-data/) (requires-python:>=3.7), version: 23.1.dev0 2024-06-28T12:27:40,511 Skipping link: No binaries permitted for galaxy-data: https://files.pythonhosted.org/packages/23/4e/c3b4d8e869c3e3d6e3f65347f2b74c4d5a7bd991e09dcd51769f22b7d675/galaxy_data-23.1.dev0-py3-none-any.whl (from https://pypi.org/simple/galaxy-data/) (requires-python:>=3.7) 2024-06-28T12:27:40,512 Found link https://files.pythonhosted.org/packages/2e/ab/c779d329cab0ea8f9c97cc150bea27cd03fd548abd5b4f53e7b99325f307/galaxy-data-23.1.1.tar.gz (from https://pypi.org/simple/galaxy-data/) (requires-python:>=3.7), version: 23.1.1 2024-06-28T12:27:40,513 Skipping link: No binaries permitted for galaxy-data: https://files.pythonhosted.org/packages/f3/b9/530eca4618ee9e5d2e9ecd2182ed65da8baa49a8e65fedaed6a0916d9ed8/galaxy_data-23.1.1-py3-none-any.whl (from https://pypi.org/simple/galaxy-data/) (requires-python:>=3.7) 2024-06-28T12:27:40,514 Found link https://files.pythonhosted.org/packages/86/91/aefff6da9dfd69458f79466ddb092673e9f650262e619e10eafc0d029ca1/galaxy-data-23.1.2.tar.gz (from https://pypi.org/simple/galaxy-data/) (requires-python:>=3.7), version: 23.1.2 2024-06-28T12:27:40,514 Skipping link: No binaries permitted for galaxy-data: https://files.pythonhosted.org/packages/56/a7/b21e07e4b2c6056705ba5684ce1d200f9b67e2ffbaacde7071e863f6787f/galaxy_data-23.1.2-py3-none-any.whl (from https://pypi.org/simple/galaxy-data/) (requires-python:>=3.7) 2024-06-28T12:27:40,515 Found link https://files.pythonhosted.org/packages/ec/1c/ccd88151b664c86ca871ee8fb7541f7d894848001f9479e85ca6f5c4657c/galaxy-data-23.1.3.tar.gz (from https://pypi.org/simple/galaxy-data/) (requires-python:>=3.7), version: 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https://files.pythonhosted.org/packages/9d/d0/fc3e64789bfbb4a1151023ee826f1b9d97789572dc2c4b249a3dde336fd0/galaxy-data-23.2.1.tar.gz (from https://pypi.org/simple/galaxy-data/) (requires-python:>=3.7), version: 23.2.1 2024-06-28T12:27:40,520 Skipping link: No binaries permitted for galaxy-data: https://files.pythonhosted.org/packages/3a/1a/51695e668d5559c441f4727bf41aea99e08b68216dfcbdfbf1f30431e098/galaxy_data-23.2.1-py3-none-any.whl (from https://pypi.org/simple/galaxy-data/) (requires-python:>=3.7) 2024-06-28T12:27:40,521 Found link https://files.pythonhosted.org/packages/23/44/9ba68186f7d05ee715fbd49ea248d50914b554f40d25c13e4879c35606cd/galaxy-data-24.0.0.tar.gz (from https://pypi.org/simple/galaxy-data/) (requires-python:>=3.8), version: 24.0.0 2024-06-28T12:27:40,522 Skipping link: No binaries permitted for galaxy-data: https://files.pythonhosted.org/packages/7e/e6/5eff55e243ef31a97b6b0c61958fbe1697c54cb19a96ef6e70faa0664ad4/galaxy_data-24.0.0-py3-none-any.whl (from 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https://files.pythonhosted.org/packages/15/c2/c45c7e3b665cf7b11d2119d78bd6a1565298ea6bc9c8c884e0fa9d38f469/galaxy_data-24.0.2.tar.gz (from https://pypi.org/simple/galaxy-data/) (requires-python:>=3.8), version: 24.0.2 2024-06-28T12:27:40,525 Skipping link: No binaries permitted for galaxy-data: https://files.pythonhosted.org/packages/b8/41/a026815381f2318fc4c998c3efd21dec00afd29b8f2f21d343c64da20de6/galaxy_data-24.0.3-py3-none-any.whl (from https://pypi.org/simple/galaxy-data/) (requires-python:>=3.8) 2024-06-28T12:27:40,526 Found link https://files.pythonhosted.org/packages/ff/34/25dd6cf69cd7e60e9d58cb69c714d7fbe817cd7a933e2196da0452714b28/galaxy_data-24.0.3.tar.gz (from https://pypi.org/simple/galaxy-data/) (requires-python:>=3.8), version: 24.0.3 2024-06-28T12:27:40,526 Fetching project page and analyzing links: https://www.piwheels.org/simple/galaxy-data/ 2024-06-28T12:27:40,527 Getting page https://www.piwheels.org/simple/galaxy-data/ 2024-06-28T12:27:40,529 Found index url 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2024-06-28T12:27:40,719 Skipping link: No binaries permitted for galaxy-data: https://www.piwheels.org/simple/galaxy-data/galaxy_data-23.1.2-py3-none-any.whl#sha256=6bc2bf81f9d19cc7f8c36895d91310bb81c9665bd6734da2d822c97268795271 (from https://www.piwheels.org/simple/galaxy-data/) (requires-python:>=3.7) 2024-06-28T12:27:40,719 Skipping link: No binaries permitted for galaxy-data: https://www.piwheels.org/simple/galaxy-data/galaxy_data-23.1.1-py3-none-any.whl#sha256=f427d6cda528220b4f2e49bd96c760316c0ce7a163426b85318cd7e839ee2f36 (from https://www.piwheels.org/simple/galaxy-data/) (requires-python:>=3.7) 2024-06-28T12:27:40,720 Skipping link: No binaries permitted for galaxy-data: https://www.piwheels.org/simple/galaxy-data/galaxy_data-23.1.dev0-py3-none-any.whl#sha256=d8bdc54c892782be56993b9430444e6e975e9a3c16a39ece618774bfb75789d8 (from https://www.piwheels.org/simple/galaxy-data/) (requires-python:>=3.7) 2024-06-28T12:27:40,720 Skipping link: No binaries permitted for galaxy-data: https://www.piwheels.org/simple/galaxy-data/galaxy_data-23.0.6-py3-none-any.whl#sha256=1e5ed6cae0510e76e323813199175a56f1b4f2cb3ed9ed3fb1ac8428f8f30be5 (from https://www.piwheels.org/simple/galaxy-data/) (requires-python:>=3.7) 2024-06-28T12:27:40,721 Skipping link: No binaries permitted for galaxy-data: https://www.piwheels.org/simple/galaxy-data/galaxy_data-23.0.5-py3-none-any.whl#sha256=5d7a907df2f9960fc2ecec8662179e56cdcba1fb16b8566835cf8ef787f30475 (from https://www.piwheels.org/simple/galaxy-data/) (requires-python:>=3.7) 2024-06-28T12:27:40,721 Skipping link: No binaries permitted for galaxy-data: https://www.piwheels.org/simple/galaxy-data/galaxy_data-23.0.4-py3-none-any.whl#sha256=3d5ad2502fa48e10c71a6fcdb795b447622b4e1123eaf7cd1f35fda65247e6e0 (from https://www.piwheels.org/simple/galaxy-data/) (requires-python:>=3.7) 2024-06-28T12:27:40,722 Skipping link: No binaries permitted for galaxy-data: https://www.piwheels.org/simple/galaxy-data/galaxy_data-23.0.3-py3-none-any.whl#sha256=a1ec090ccffc228e8f898443429b4bc9bc58012ca46e62e260cdf45066f73a8c (from https://www.piwheels.org/simple/galaxy-data/) (requires-python:>=3.7) 2024-06-28T12:27:40,722 Skipping link: No binaries permitted for galaxy-data: https://www.piwheels.org/simple/galaxy-data/galaxy_data-23.0.2-py3-none-any.whl#sha256=18a9d01cacbdcae2910e2f789500232af1ef28514b68aff9665647c9e3a4d88a (from https://www.piwheels.org/simple/galaxy-data/) (requires-python:>=3.7) 2024-06-28T12:27:40,723 Skipping link: No binaries permitted for galaxy-data: https://www.piwheels.org/simple/galaxy-data/galaxy_data-23.0.1-py3-none-any.whl#sha256=38f45c3df5f937ec7f557046dca6148d6b279b6706c66a18de89ab5c111c712c (from https://www.piwheels.org/simple/galaxy-data/) (requires-python:>=3.7) 2024-06-28T12:27:40,724 Skipping link: No binaries permitted for galaxy-data: https://www.piwheels.org/simple/galaxy-data/galaxy_data-22.1.1-py2.py3-none-any.whl#sha256=ecc837f08336d9e32b26184803927f5386aec84e8d67d2a30e198498bb951b19 (from https://www.piwheels.org/simple/galaxy-data/) 2024-06-28T12:27:40,724 Skipping link: No binaries permitted for galaxy-data: https://www.piwheels.org/simple/galaxy-data/galaxy_data-21.9.0-py2.py3-none-any.whl#sha256=7bd7fa30190a424a66c62f96012c6dd667990fc8ae39dcb1e4ddc6811e6c9a4d (from https://www.piwheels.org/simple/galaxy-data/) 2024-06-28T12:27:40,725 Skipping link: No binaries permitted for galaxy-data: https://www.piwheels.org/simple/galaxy-data/galaxy_data-20.9.1-py2.py3-none-any.whl#sha256=6a456ec927643665dae5c649a6a18460d79474bd5e1277274ea2174e952f94c2 (from https://www.piwheels.org/simple/galaxy-data/) 2024-06-28T12:27:40,725 Skipping link: No binaries permitted for galaxy-data: https://www.piwheels.org/simple/galaxy-data/galaxy_data-20.9.0-py2.py3-none-any.whl#sha256=ec937bfcfff347039541431d9724018b14a295ecc49f0831145f8947264a5d3b (from https://www.piwheels.org/simple/galaxy-data/) 2024-06-28T12:27:40,726 Skipping link: No binaries permitted for galaxy-data: https://www.piwheels.org/simple/galaxy-data/galaxy_data-20.5.0-py2.py3-none-any.whl#sha256=7ee3d488fc5ef68f91d03116383adac3f4db74334062abb069386b01b39d80f4 (from https://www.piwheels.org/simple/galaxy-data/) 2024-06-28T12:27:40,727 Skipping link: No binaries permitted for galaxy-data: https://www.piwheels.org/simple/galaxy-data/galaxy_data-19.9.0.dev3-py2.py3-none-any.whl#sha256=52651203dfccbfdf8b37326330598785a8c0002d69a461fba17f6a7031bdce85 (from https://www.piwheels.org/simple/galaxy-data/) 2024-06-28T12:27:40,727 Skipping link: No binaries permitted for galaxy-data: https://www.piwheels.org/simple/galaxy-data/galaxy_data-19.9.0.dev2-py2.py3-none-any.whl#sha256=be58e78b806fa3f85a8a8d45b7f040439a0c95d461003172d2b7b4430002d33f (from https://www.piwheels.org/simple/galaxy-data/) 2024-06-28T12:27:40,728 Skipping link: No binaries permitted for galaxy-data: https://www.piwheels.org/simple/galaxy-data/galaxy_data-19.9.0.dev1-py2.py3-none-any.whl#sha256=ef242b3d745ced066c572d137b43095eb7df42074a5e1e8eca76ea52cf065a92 (from https://www.piwheels.org/simple/galaxy-data/) 2024-06-28T12:27:40,728 Skipping link: No binaries permitted for galaxy-data: https://www.piwheels.org/simple/galaxy-data/galaxy_data-19.9.0.dev0-py3-none-any.whl#sha256=d4831c48a07316758b909a471cb006e270083f3ceccc3d174f78b44b07a914ff (from https://www.piwheels.org/simple/galaxy-data/) 2024-06-28T12:27:40,729 Skipping link: not a file: https://www.piwheels.org/simple/galaxy-data/ 2024-06-28T12:27:40,729 Skipping link: not a file: https://pypi.org/simple/galaxy-data/ 2024-06-28T12:27:40,752 Given no hashes to check 1 links for project 'galaxy-data': discarding no candidates 2024-06-28T12:27:40,772 Collecting galaxy-data==24.0.3 2024-06-28T12:27:40,775 Created temporary directory: /tmp/pip-unpack-fdky8kow 2024-06-28T12:27:40,998 Downloading galaxy_data-24.0.3.tar.gz (549 kB) 2024-06-28T12:27:41,722 Added galaxy-data==24.0.3 from https://files.pythonhosted.org/packages/ff/34/25dd6cf69cd7e60e9d58cb69c714d7fbe817cd7a933e2196da0452714b28/galaxy_data-24.0.3.tar.gz to build tracker '/tmp/pip-build-tracker-ge8t7lam' 2024-06-28T12:27:41,726 Created temporary directory: /tmp/pip-build-env-uy7ni6v2 2024-06-28T12:27:41,730 Installing build dependencies: started 2024-06-28T12:27:41,731 Running command pip subprocess to install build dependencies 2024-06-28T12:27:42,863 Using pip 24.0 from /usr/local/lib/python3.11/dist-packages/pip (python 3.11) 2024-06-28T12:27:43,365 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2024-06-28T12:27:44,824 Collecting setuptools 2024-06-28T12:27:44,840 Using cached https://www.piwheels.org/simple/setuptools/setuptools-70.1.1-py3-none-any.whl (883 kB) 2024-06-28T12:27:47,465 Installing collected packages: setuptools 2024-06-28T12:27:49,876 Successfully installed setuptools-70.1.1 2024-06-28T12:27:50,189 [notice] A new release of pip is available: 24.0 -> 24.1 2024-06-28T12:27:50,190 [notice] To update, run: python3 -m pip install --upgrade pip 2024-06-28T12:27:50,459 Installing build dependencies: finished with status 'done' 2024-06-28T12:27:50,462 Getting requirements to build wheel: started 2024-06-28T12:27:50,463 Running command Getting requirements to build wheel 2024-06-28T12:27:51,110 running egg_info 2024-06-28T12:27:51,113 writing galaxy_data.egg-info/PKG-INFO 2024-06-28T12:27:51,119 writing dependency_links to galaxy_data.egg-info/dependency_links.txt 2024-06-28T12:27:51,121 writing entry points to galaxy_data.egg-info/entry_points.txt 2024-06-28T12:27:51,123 writing requirements to galaxy_data.egg-info/requires.txt 2024-06-28T12:27:51,125 writing top-level names to galaxy_data.egg-info/top_level.txt 2024-06-28T12:27:51,163 reading manifest file 'galaxy_data.egg-info/SOURCES.txt' 2024-06-28T12:27:51,180 reading manifest template 'MANIFEST.in' 2024-06-28T12:27:51,207 adding license file 'LICENSE' 2024-06-28T12:27:51,222 writing manifest file 'galaxy_data.egg-info/SOURCES.txt' 2024-06-28T12:27:51,308 Getting requirements to build wheel: finished with status 'done' 2024-06-28T12:27:51,311 Created temporary directory: /tmp/pip-modern-metadata-pk_w8058 2024-06-28T12:27:51,313 Preparing metadata (pyproject.toml): started 2024-06-28T12:27:51,315 Running command Preparing metadata (pyproject.toml) 2024-06-28T12:27:51,894 running dist_info 2024-06-28T12:27:51,899 creating /tmp/pip-modern-metadata-pk_w8058/galaxy_data.egg-info 2024-06-28T12:27:51,902 writing /tmp/pip-modern-metadata-pk_w8058/galaxy_data.egg-info/PKG-INFO 2024-06-28T12:27:51,908 writing dependency_links to /tmp/pip-modern-metadata-pk_w8058/galaxy_data.egg-info/dependency_links.txt 2024-06-28T12:27:51,910 writing entry points to /tmp/pip-modern-metadata-pk_w8058/galaxy_data.egg-info/entry_points.txt 2024-06-28T12:27:51,911 writing requirements to /tmp/pip-modern-metadata-pk_w8058/galaxy_data.egg-info/requires.txt 2024-06-28T12:27:51,912 writing top-level names to /tmp/pip-modern-metadata-pk_w8058/galaxy_data.egg-info/top_level.txt 2024-06-28T12:27:51,914 writing manifest file '/tmp/pip-modern-metadata-pk_w8058/galaxy_data.egg-info/SOURCES.txt' 2024-06-28T12:27:51,946 reading manifest file '/tmp/pip-modern-metadata-pk_w8058/galaxy_data.egg-info/SOURCES.txt' 2024-06-28T12:27:51,948 reading manifest template 'MANIFEST.in' 2024-06-28T12:27:51,970 adding license file 'LICENSE' 2024-06-28T12:27:51,981 writing manifest file '/tmp/pip-modern-metadata-pk_w8058/galaxy_data.egg-info/SOURCES.txt' 2024-06-28T12:27:51,983 creating '/tmp/pip-modern-metadata-pk_w8058/galaxy_data-24.0.3.dist-info' 2024-06-28T12:27:52,123 Preparing metadata (pyproject.toml): finished with status 'done' 2024-06-28T12:27:52,130 Source in /tmp/pip-wheel-8wtjwaji/galaxy-data_5701465bbc5e4db4ba663be590823481 has version 24.0.3, which satisfies requirement galaxy-data==24.0.3 from https://files.pythonhosted.org/packages/ff/34/25dd6cf69cd7e60e9d58cb69c714d7fbe817cd7a933e2196da0452714b28/galaxy_data-24.0.3.tar.gz 2024-06-28T12:27:52,131 Removed galaxy-data==24.0.3 from https://files.pythonhosted.org/packages/ff/34/25dd6cf69cd7e60e9d58cb69c714d7fbe817cd7a933e2196da0452714b28/galaxy_data-24.0.3.tar.gz from build tracker '/tmp/pip-build-tracker-ge8t7lam' 2024-06-28T12:27:52,141 Created temporary directory: /tmp/pip-unpack-xftnu7fv 2024-06-28T12:27:52,142 Created temporary directory: /tmp/pip-unpack-zokldf4y 2024-06-28T12:27:52,179 Building wheels for collected packages: galaxy-data 2024-06-28T12:27:52,184 Created temporary directory: /tmp/pip-wheel-_uvlpc7w 2024-06-28T12:27:52,184 Destination directory: /tmp/pip-wheel-_uvlpc7w 2024-06-28T12:27:52,186 Building wheel for galaxy-data (pyproject.toml): started 2024-06-28T12:27:52,188 Running command Building wheel for galaxy-data (pyproject.toml) 2024-06-28T12:27:52,751 running bdist_wheel 2024-06-28T12:27:52,790 running build 2024-06-28T12:27:52,791 running build_py 2024-06-28T12:27:52,797 creating build 2024-06-28T12:27:52,798 creating build/lib 2024-06-28T12:27:52,798 creating build/lib/galaxy 2024-06-28T12:27:52,800 copying galaxy/__init__.py -> build/lib/galaxy 2024-06-28T12:27:52,803 creating build/lib/galaxy/model 2024-06-28T12:27:52,804 copying galaxy/model/database_object_names.py -> build/lib/galaxy/model 2024-06-28T12:27:52,806 copying galaxy/model/database_heartbeat.py -> build/lib/galaxy/model 2024-06-28T12:27:52,808 copying galaxy/model/item_attrs.py -> build/lib/galaxy/model 2024-06-28T12:27:52,810 copying galaxy/model/base.py -> build/lib/galaxy/model 2024-06-28T12:27:52,813 copying galaxy/model/index_filter_util.py -> build/lib/galaxy/model 2024-06-28T12:27:52,815 copying galaxy/model/metadata.py -> build/lib/galaxy/model 2024-06-28T12:27:52,818 copying galaxy/model/custom_types.py -> build/lib/galaxy/model 2024-06-28T12:27:52,820 copying galaxy/model/__init__.py -> build/lib/galaxy/model 2024-06-28T12:27:52,831 copying galaxy/model/none_like.py -> build/lib/galaxy/model 2024-06-28T12:27:52,833 copying galaxy/model/mapping.py -> build/lib/galaxy/model 2024-06-28T12:27:52,835 copying galaxy/model/security.py -> build/lib/galaxy/model 2024-06-28T12:27:52,839 copying galaxy/model/database_utils.py -> build/lib/galaxy/model 2024-06-28T12:27:52,842 copying galaxy/model/deferred.py -> build/lib/galaxy/model 2024-06-28T12:27:52,844 copying galaxy/model/tags.py -> build/lib/galaxy/model 2024-06-28T12:27:52,846 copying galaxy/model/scoped_session.py -> build/lib/galaxy/model 2024-06-28T12:27:52,850 creating build/lib/galaxy/datatypes 2024-06-28T12:27:52,851 copying galaxy/datatypes/data.py -> build/lib/galaxy/datatypes 2024-06-28T12:27:52,854 copying galaxy/datatypes/xml.py -> build/lib/galaxy/datatypes 2024-06-28T12:27:52,856 copying galaxy/datatypes/speech.py -> build/lib/galaxy/datatypes 2024-06-28T12:27:52,858 copying galaxy/datatypes/annotation.py -> build/lib/galaxy/datatypes 2024-06-28T12:27:52,860 copying galaxy/datatypes/assembly.py -> build/lib/galaxy/datatypes 2024-06-28T12:27:52,862 copying galaxy/datatypes/spaln.py -> build/lib/galaxy/datatypes 2024-06-28T12:27:52,864 copying galaxy/datatypes/media.py -> build/lib/galaxy/datatypes 2024-06-28T12:27:52,866 copying galaxy/datatypes/larch.py -> build/lib/galaxy/datatypes 2024-06-28T12:27:52,869 copying galaxy/datatypes/ngsindex.py -> build/lib/galaxy/datatypes 2024-06-28T12:27:52,870 copying galaxy/datatypes/chain.py -> build/lib/galaxy/datatypes 2024-06-28T12:27:52,872 copying galaxy/datatypes/protocols.py -> build/lib/galaxy/datatypes 2024-06-28T12:27:52,874 copying galaxy/datatypes/metacyto.py -> build/lib/galaxy/datatypes 2024-06-28T12:27:52,876 copying galaxy/datatypes/graph.py -> build/lib/galaxy/datatypes 2024-06-28T12:27:52,878 copying galaxy/datatypes/tabular.py -> build/lib/galaxy/datatypes 2024-06-28T12:27:52,882 copying galaxy/datatypes/isa.py -> build/lib/galaxy/datatypes 2024-06-28T12:27:52,884 copying galaxy/datatypes/metadata.py -> build/lib/galaxy/datatypes 2024-06-28T12:27:52,886 copying galaxy/datatypes/anvio.py -> build/lib/galaxy/datatypes 2024-06-28T12:27:52,888 copying galaxy/datatypes/sequence.py -> build/lib/galaxy/datatypes 2024-06-28T12:27:52,891 copying galaxy/datatypes/qualityscore.py -> build/lib/galaxy/datatypes 2024-06-28T12:27:52,893 copying galaxy/datatypes/goldenpath.py -> build/lib/galaxy/datatypes 2024-06-28T12:27:52,895 copying galaxy/datatypes/neo4j.py -> build/lib/galaxy/datatypes 2024-06-28T12:27:52,897 copying galaxy/datatypes/proteomics.py -> build/lib/galaxy/datatypes 2024-06-28T12:27:52,900 copying galaxy/datatypes/upload_util.py -> build/lib/galaxy/datatypes 2024-06-28T12:27:52,902 copying galaxy/datatypes/flow.py -> build/lib/galaxy/datatypes 2024-06-28T12:27:52,904 copying galaxy/datatypes/gis.py -> build/lib/galaxy/datatypes 2024-06-28T12:27:52,907 copying galaxy/datatypes/__init__.py -> build/lib/galaxy/datatypes 2024-06-28T12:27:52,908 copying galaxy/datatypes/triples.py -> build/lib/galaxy/datatypes 2024-06-28T12:27:52,910 copying galaxy/datatypes/plant_tribes.py -> build/lib/galaxy/datatypes 2024-06-28T12:27:52,912 copying galaxy/datatypes/blast.py -> build/lib/galaxy/datatypes 2024-06-28T12:27:52,915 copying galaxy/datatypes/binary.py -> build/lib/galaxy/datatypes 2024-06-28T12:27:52,920 copying galaxy/datatypes/text.py -> build/lib/galaxy/datatypes 2024-06-28T12:27:52,923 copying galaxy/datatypes/registry.py -> build/lib/galaxy/datatypes 2024-06-28T12:27:52,926 copying galaxy/datatypes/phylip.py -> build/lib/galaxy/datatypes 2024-06-28T12:27:52,928 copying galaxy/datatypes/coverage.py -> build/lib/galaxy/datatypes 2024-06-28T12:27:52,930 copying galaxy/datatypes/msa.py -> build/lib/galaxy/datatypes 2024-06-28T12:27:52,932 copying galaxy/datatypes/hdf5.py -> build/lib/galaxy/datatypes 2024-06-28T12:27:52,934 copying galaxy/datatypes/tracks.py -> build/lib/galaxy/datatypes 2024-06-28T12:27:52,936 copying galaxy/datatypes/_schema.py -> build/lib/galaxy/datatypes 2024-06-28T12:27:52,938 copying galaxy/datatypes/sniff.py -> build/lib/galaxy/datatypes 2024-06-28T12:27:52,940 copying galaxy/datatypes/images.py -> build/lib/galaxy/datatypes 2024-06-28T12:27:52,943 copying galaxy/datatypes/mothur.py -> build/lib/galaxy/datatypes 2024-06-28T12:27:52,946 copying galaxy/datatypes/chrominfo.py -> build/lib/galaxy/datatypes 2024-06-28T12:27:52,947 copying galaxy/datatypes/interval.py -> build/lib/galaxy/datatypes 2024-06-28T12:27:52,950 copying galaxy/datatypes/genetics.py -> build/lib/galaxy/datatypes 2024-06-28T12:27:52,954 copying galaxy/datatypes/checkers.py -> build/lib/galaxy/datatypes 2024-06-28T12:27:52,955 copying galaxy/datatypes/microarrays.py -> build/lib/galaxy/datatypes 2024-06-28T12:27:52,957 copying galaxy/datatypes/molecules.py -> build/lib/galaxy/datatypes 2024-06-28T12:27:52,960 copying galaxy/datatypes/qiime2.py -> build/lib/galaxy/datatypes 2024-06-28T12:27:52,963 copying galaxy/datatypes/constructive_solid_geometry.py -> build/lib/galaxy/datatypes 2024-06-28T12:27:52,966 creating build/lib/galaxy/quota 2024-06-28T12:27:52,967 copying galaxy/quota/__init__.py -> build/lib/galaxy/quota 2024-06-28T12:27:52,969 copying galaxy/quota/_schema.py -> build/lib/galaxy/quota 2024-06-28T12:27:52,972 creating build/lib/galaxy/security 2024-06-28T12:27:52,973 copying galaxy/security/validate_user_input.py -> build/lib/galaxy/security 2024-06-28T12:27:52,976 copying galaxy/security/idencoding.py -> build/lib/galaxy/security 2024-06-28T12:27:52,978 copying galaxy/security/vault.py -> build/lib/galaxy/security 2024-06-28T12:27:52,980 copying galaxy/security/ssh_util.py -> build/lib/galaxy/security 2024-06-28T12:27:52,982 copying galaxy/security/__init__.py -> build/lib/galaxy/security 2024-06-28T12:27:52,984 copying galaxy/security/passwords.py -> build/lib/galaxy/security 2024-06-28T12:27:52,986 copying galaxy/security/object_wrapper.py -> build/lib/galaxy/security 2024-06-28T12:27:52,989 creating build/lib/galaxy/model/store 2024-06-28T12:27:52,990 copying galaxy/model/store/load_objects.py -> build/lib/galaxy/model/store 2024-06-28T12:27:52,992 copying galaxy/model/store/_bco_convert_utils.py -> build/lib/galaxy/model/store 2024-06-28T12:27:52,993 copying galaxy/model/store/discover.py -> build/lib/galaxy/model/store 2024-06-28T12:27:52,996 copying galaxy/model/store/build_objects.py -> build/lib/galaxy/model/store 2024-06-28T12:27:52,999 copying galaxy/model/store/__init__.py -> build/lib/galaxy/model/store 2024-06-28T12:27:53,003 copying galaxy/model/store/ro_crate_utils.py -> build/lib/galaxy/model/store 2024-06-28T12:27:53,006 creating build/lib/galaxy/model/migrations 2024-06-28T12:27:53,007 copying galaxy/model/migrations/util.py -> build/lib/galaxy/model/migrations 2024-06-28T12:27:53,010 copying galaxy/model/migrations/exceptions.py -> build/lib/galaxy/model/migrations 2024-06-28T12:27:53,012 copying galaxy/model/migrations/scripts.py -> build/lib/galaxy/model/migrations 2024-06-28T12:27:53,014 copying galaxy/model/migrations/base.py -> build/lib/galaxy/model/migrations 2024-06-28T12:27:53,016 copying galaxy/model/migrations/__init__.py -> build/lib/galaxy/model/migrations 2024-06-28T12:27:53,019 copying galaxy/model/migrations/dbscript.py -> build/lib/galaxy/model/migrations 2024-06-28T12:27:53,021 creating build/lib/galaxy/model/tool_shed_install 2024-06-28T12:27:53,022 copying galaxy/model/tool_shed_install/__init__.py -> build/lib/galaxy/model/tool_shed_install 2024-06-28T12:27:53,025 copying galaxy/model/tool_shed_install/mapping.py -> build/lib/galaxy/model/tool_shed_install 2024-06-28T12:27:53,028 creating build/lib/galaxy/model/unittest_utils 2024-06-28T12:27:53,029 copying galaxy/model/unittest_utils/model_testing_utils.py -> build/lib/galaxy/model/unittest_utils 2024-06-28T12:27:53,031 copying galaxy/model/unittest_utils/gxy_model_fixtures.py -> build/lib/galaxy/model/unittest_utils 2024-06-28T12:27:53,034 copying galaxy/model/unittest_utils/beaker_testing_utils.py -> build/lib/galaxy/model/unittest_utils 2024-06-28T12:27:53,036 copying galaxy/model/unittest_utils/store_fixtures.py -> build/lib/galaxy/model/unittest_utils 2024-06-28T12:27:53,038 copying galaxy/model/unittest_utils/tsi_model_fixtures.py -> build/lib/galaxy/model/unittest_utils 2024-06-28T12:27:53,040 copying galaxy/model/unittest_utils/migration_scripts_testing_utils.py -> build/lib/galaxy/model/unittest_utils 2024-06-28T12:27:53,041 copying galaxy/model/unittest_utils/__init__.py -> build/lib/galaxy/model/unittest_utils 2024-06-28T12:27:53,043 copying galaxy/model/unittest_utils/data_app.py -> build/lib/galaxy/model/unittest_utils 2024-06-28T12:27:53,045 copying galaxy/model/unittest_utils/mapping_testing_utils.py -> build/lib/galaxy/model/unittest_utils 2024-06-28T12:27:53,047 creating build/lib/galaxy/model/orm 2024-06-28T12:27:53,048 copying galaxy/model/orm/util.py -> build/lib/galaxy/model/orm 2024-06-28T12:27:53,051 copying galaxy/model/orm/scripts.py -> build/lib/galaxy/model/orm 2024-06-28T12:27:53,053 copying galaxy/model/orm/__init__.py -> build/lib/galaxy/model/orm 2024-06-28T12:27:53,054 copying galaxy/model/orm/engine_factory.py -> build/lib/galaxy/model/orm 2024-06-28T12:27:53,056 copying galaxy/model/orm/now.py -> build/lib/galaxy/model/orm 2024-06-28T12:27:53,059 creating build/lib/galaxy/model/dataset_collections 2024-06-28T12:27:53,060 copying galaxy/model/dataset_collections/type_description.py -> build/lib/galaxy/model/dataset_collections 2024-06-28T12:27:53,062 copying galaxy/model/dataset_collections/structure.py -> build/lib/galaxy/model/dataset_collections 2024-06-28T12:27:53,064 copying galaxy/model/dataset_collections/matching.py -> build/lib/galaxy/model/dataset_collections 2024-06-28T12:27:53,066 copying galaxy/model/dataset_collections/builder.py -> build/lib/galaxy/model/dataset_collections 2024-06-28T12:27:53,068 copying galaxy/model/dataset_collections/__init__.py -> build/lib/galaxy/model/dataset_collections 2024-06-28T12:27:53,070 copying galaxy/model/dataset_collections/registry.py -> build/lib/galaxy/model/dataset_collections 2024-06-28T12:27:53,072 copying galaxy/model/dataset_collections/subcollections.py -> build/lib/galaxy/model/dataset_collections 2024-06-28T12:27:53,074 creating build/lib/galaxy/model/triggers 2024-06-28T12:27:53,075 copying galaxy/model/triggers/update_audit_table.py -> build/lib/galaxy/model/triggers 2024-06-28T12:27:53,077 copying galaxy/model/triggers/utils.py -> build/lib/galaxy/model/triggers 2024-06-28T12:27:53,079 copying galaxy/model/triggers/__init__.py -> build/lib/galaxy/model/triggers 2024-06-28T12:27:53,081 copying galaxy/model/triggers/history_update_time_field.py -> build/lib/galaxy/model/triggers 2024-06-28T12:27:53,083 creating build/lib/galaxy/model/dataset_collections/types 2024-06-28T12:27:53,084 copying galaxy/model/dataset_collections/types/__init__.py -> build/lib/galaxy/model/dataset_collections/types 2024-06-28T12:27:53,086 copying galaxy/model/dataset_collections/types/list.py -> build/lib/galaxy/model/dataset_collections/types 2024-06-28T12:27:53,088 copying galaxy/model/dataset_collections/types/paired.py -> build/lib/galaxy/model/dataset_collections/types 2024-06-28T12:27:53,090 creating build/lib/galaxy/datatypes/dataproviders 2024-06-28T12:27:53,091 copying galaxy/datatypes/dataproviders/exceptions.py -> build/lib/galaxy/datatypes/dataproviders 2024-06-28T12:27:53,093 copying galaxy/datatypes/dataproviders/chunk.py -> build/lib/galaxy/datatypes/dataproviders 2024-06-28T12:27:53,095 copying galaxy/datatypes/dataproviders/external.py -> build/lib/galaxy/datatypes/dataproviders 2024-06-28T12:27:53,097 copying galaxy/datatypes/dataproviders/base.py -> build/lib/galaxy/datatypes/dataproviders 2024-06-28T12:27:53,099 copying galaxy/datatypes/dataproviders/decorators.py -> build/lib/galaxy/datatypes/dataproviders 2024-06-28T12:27:53,101 copying galaxy/datatypes/dataproviders/hierarchy.py -> build/lib/galaxy/datatypes/dataproviders 2024-06-28T12:27:53,103 copying galaxy/datatypes/dataproviders/__init__.py -> build/lib/galaxy/datatypes/dataproviders 2024-06-28T12:27:53,105 copying galaxy/datatypes/dataproviders/line.py -> build/lib/galaxy/datatypes/dataproviders 2024-06-28T12:27:53,107 copying galaxy/datatypes/dataproviders/column.py -> build/lib/galaxy/datatypes/dataproviders 2024-06-28T12:27:53,109 copying galaxy/datatypes/dataproviders/dataset.py -> build/lib/galaxy/datatypes/dataproviders 2024-06-28T12:27:53,113 creating build/lib/galaxy/datatypes/converters 2024-06-28T12:27:53,114 copying galaxy/datatypes/converters/fasta_to_len.py -> build/lib/galaxy/datatypes/converters 2024-06-28T12:27:53,116 copying galaxy/datatypes/converters/maf_to_fasta_converter.py -> build/lib/galaxy/datatypes/converters 2024-06-28T12:27:53,117 copying galaxy/datatypes/converters/bed_to_gff_converter.py -> build/lib/galaxy/datatypes/converters 2024-06-28T12:27:53,119 copying galaxy/datatypes/converters/gff_to_interval_index_converter.py -> build/lib/galaxy/datatypes/converters 2024-06-28T12:27:53,121 copying galaxy/datatypes/converters/fastq_to_fqtoc.py -> build/lib/galaxy/datatypes/converters 2024-06-28T12:27:53,123 copying galaxy/datatypes/converters/picard_interval_list_to_bed6_converter.py -> build/lib/galaxy/datatypes/converters 2024-06-28T12:27:53,124 copying galaxy/datatypes/converters/ref_to_seq_taxonomy_converter.py -> build/lib/galaxy/datatypes/converters 2024-06-28T12:27:53,126 copying galaxy/datatypes/converters/parquet_to_csv_converter.py -> build/lib/galaxy/datatypes/converters 2024-06-28T12:27:53,128 copying galaxy/datatypes/converters/pbed_ldreduced_converter.py -> build/lib/galaxy/datatypes/converters 2024-06-28T12:27:53,130 copying galaxy/datatypes/converters/fasta_to_tabular_converter.py -> build/lib/galaxy/datatypes/converters 2024-06-28T12:27:53,131 copying galaxy/datatypes/converters/lped_to_pbed_converter.py -> build/lib/galaxy/datatypes/converters 2024-06-28T12:27:53,134 copying galaxy/datatypes/converters/maf_to_interval_converter.py -> build/lib/galaxy/datatypes/converters 2024-06-28T12:27:53,135 copying galaxy/datatypes/converters/fastqsolexa_to_qual_converter.py -> build/lib/galaxy/datatypes/converters 2024-06-28T12:27:53,137 copying galaxy/datatypes/converters/interval_to_interval_index_converter.py -> build/lib/galaxy/datatypes/converters 2024-06-28T12:27:53,139 copying galaxy/datatypes/converters/__init__.py -> build/lib/galaxy/datatypes/converters 2024-06-28T12:27:53,141 copying galaxy/datatypes/converters/interval_to_fli.py -> build/lib/galaxy/datatypes/converters 2024-06-28T12:27:53,142 copying galaxy/datatypes/converters/interval_to_bedstrict_converter.py -> build/lib/galaxy/datatypes/converters 2024-06-28T12:27:53,145 copying galaxy/datatypes/converters/lped_to_fped_converter.py -> build/lib/galaxy/datatypes/converters 2024-06-28T12:27:53,147 copying galaxy/datatypes/converters/wiggle_to_simple_converter.py -> build/lib/galaxy/datatypes/converters 2024-06-28T12:27:53,148 copying galaxy/datatypes/converters/fastqsolexa_to_fasta_converter.py -> build/lib/galaxy/datatypes/converters 2024-06-28T12:27:53,150 copying galaxy/datatypes/converters/pbed_to_lped_converter.py -> build/lib/galaxy/datatypes/converters 2024-06-28T12:27:53,152 copying galaxy/datatypes/converters/interval_to_bed_converter.py -> build/lib/galaxy/datatypes/converters 2024-06-28T12:27:53,154 copying galaxy/datatypes/converters/pileup_to_interval_index_converter.py -> build/lib/galaxy/datatypes/converters 2024-06-28T12:27:53,156 copying galaxy/datatypes/converters/gff_to_bed_converter.py -> build/lib/galaxy/datatypes/converters 2024-06-28T12:27:53,158 copying galaxy/datatypes/converters/vcf_to_interval_index_converter.py -> build/lib/galaxy/datatypes/converters 2024-06-28T12:27:53,160 copying galaxy/datatypes/converters/tabular_csv.py -> build/lib/galaxy/datatypes/converters 2024-06-28T12:27:53,162 creating build/lib/galaxy/datatypes/display_applications 2024-06-28T12:27:53,163 copying galaxy/datatypes/display_applications/util.py -> build/lib/galaxy/datatypes/display_applications 2024-06-28T12:27:53,165 copying galaxy/datatypes/display_applications/__init__.py -> build/lib/galaxy/datatypes/display_applications 2024-06-28T12:27:53,167 copying galaxy/datatypes/display_applications/parameters.py -> build/lib/galaxy/datatypes/display_applications 2024-06-28T12:27:53,169 copying galaxy/datatypes/display_applications/application.py -> build/lib/galaxy/datatypes/display_applications 2024-06-28T12:27:53,172 creating build/lib/galaxy/datatypes/util 2024-06-28T12:27:53,173 copying galaxy/datatypes/util/gff_util.py -> build/lib/galaxy/datatypes/util 2024-06-28T12:27:53,176 copying galaxy/datatypes/util/generic_util.py -> build/lib/galaxy/datatypes/util 2024-06-28T12:27:53,178 copying galaxy/datatypes/util/__init__.py -> build/lib/galaxy/datatypes/util 2024-06-28T12:27:53,179 copying galaxy/datatypes/util/maf_utilities.py -> build/lib/galaxy/datatypes/util 2024-06-28T12:27:53,182 running egg_info 2024-06-28T12:27:53,185 writing galaxy_data.egg-info/PKG-INFO 2024-06-28T12:27:53,191 writing dependency_links to galaxy_data.egg-info/dependency_links.txt 2024-06-28T12:27:53,192 writing entry points to galaxy_data.egg-info/entry_points.txt 2024-06-28T12:27:53,194 writing requirements to galaxy_data.egg-info/requires.txt 2024-06-28T12:27:53,195 writing top-level names to galaxy_data.egg-info/top_level.txt 2024-06-28T12:27:53,220 reading manifest file 'galaxy_data.egg-info/SOURCES.txt' 2024-06-28T12:27:53,227 reading manifest template 'MANIFEST.in' 2024-06-28T12:27:53,250 adding license file 'LICENSE' 2024-06-28T12:27:53,264 writing manifest file 'galaxy_data.egg-info/SOURCES.txt' 2024-06-28T12:27:53,269 /tmp/pip-build-env-uy7ni6v2/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'galaxy.datatypes.display_applications.configs.biom' is absent from the `packages` configuration. 2024-06-28T12:27:53,269 !! 2024-06-28T12:27:53,270 ******************************************************************************** 2024-06-28T12:27:53,271 ############################ 2024-06-28T12:27:53,271 # Package would be ignored # 2024-06-28T12:27:53,272 ############################ 2024-06-28T12:27:53,272 Python recognizes 'galaxy.datatypes.display_applications.configs.biom' as an importable package[^1], 2024-06-28T12:27:53,273 but it is absent from setuptools' `packages` configuration. 2024-06-28T12:27:53,275 This leads to an ambiguous overall configuration. If you want to distribute this 2024-06-28T12:27:53,275 package, please make sure that 'galaxy.datatypes.display_applications.configs.biom' is explicitly added 2024-06-28T12:27:53,276 to the `packages` configuration field. 2024-06-28T12:27:53,277 Alternatively, you can also rely on setuptools' discovery methods 2024-06-28T12:27:53,278 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-06-28T12:27:53,278 instead of `find_packages(...)`/`find:`). 2024-06-28T12:27:53,279 You can read more about "package discovery" on setuptools documentation page: 2024-06-28T12:27:53,281 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-06-28T12:27:53,282 If you don't want 'galaxy.datatypes.display_applications.configs.biom' to be distributed and are 2024-06-28T12:27:53,282 already explicitly excluding 'galaxy.datatypes.display_applications.configs.biom' via 2024-06-28T12:27:53,283 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-06-28T12:27:53,283 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-06-28T12:27:53,284 combination with a more fine grained `package-data` configuration. 2024-06-28T12:27:53,285 You can read more about "package data files" on setuptools documentation page: 2024-06-28T12:27:53,286 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-06-28T12:27:53,288 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-06-28T12:27:53,288 even if it does not contain any `.py` files. 2024-06-28T12:27:53,289 On the other hand, currently there is no concept of package data 2024-06-28T12:27:53,289 directory, all directories are treated like packages. 2024-06-28T12:27:53,290 ******************************************************************************** 2024-06-28T12:27:53,290 !! 2024-06-28T12:27:53,291 check.warn(importable) 2024-06-28T12:27:53,291 /tmp/pip-build-env-uy7ni6v2/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'galaxy.datatypes.display_applications.configs.ensembl' is absent from the `packages` configuration. 2024-06-28T12:27:53,292 !! 2024-06-28T12:27:53,292 ******************************************************************************** 2024-06-28T12:27:53,293 ############################ 2024-06-28T12:27:53,293 # Package would be ignored # 2024-06-28T12:27:53,294 ############################ 2024-06-28T12:27:53,294 Python recognizes 'galaxy.datatypes.display_applications.configs.ensembl' as an importable package[^1], 2024-06-28T12:27:53,295 but it is absent from setuptools' `packages` configuration. 2024-06-28T12:27:53,296 This leads to an ambiguous overall configuration. If you want to distribute this 2024-06-28T12:27:53,296 package, please make sure that 'galaxy.datatypes.display_applications.configs.ensembl' is explicitly added 2024-06-28T12:27:53,296 to the `packages` configuration field. 2024-06-28T12:27:53,297 Alternatively, you can also rely on setuptools' discovery methods 2024-06-28T12:27:53,298 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-06-28T12:27:53,298 instead of `find_packages(...)`/`find:`). 2024-06-28T12:27:53,299 You can read more about "package discovery" on setuptools documentation page: 2024-06-28T12:27:53,301 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-06-28T12:27:53,302 If you don't want 'galaxy.datatypes.display_applications.configs.ensembl' to be distributed and are 2024-06-28T12:27:53,302 already explicitly excluding 'galaxy.datatypes.display_applications.configs.ensembl' via 2024-06-28T12:27:53,303 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-06-28T12:27:53,303 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-06-28T12:27:53,304 combination with a more fine grained `package-data` configuration. 2024-06-28T12:27:53,305 You can read more about "package data files" on setuptools documentation page: 2024-06-28T12:27:53,306 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-06-28T12:27:53,307 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-06-28T12:27:53,308 even if it does not contain any `.py` files. 2024-06-28T12:27:53,308 On the other hand, currently there is no concept of package data 2024-06-28T12:27:53,309 directory, all directories are treated like packages. 2024-06-28T12:27:53,310 ******************************************************************************** 2024-06-28T12:27:53,311 !! 2024-06-28T12:27:53,311 check.warn(importable) 2024-06-28T12:27:53,312 /tmp/pip-build-env-uy7ni6v2/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'galaxy.datatypes.display_applications.configs.gbrowse' is absent from the `packages` configuration. 2024-06-28T12:27:53,312 !! 2024-06-28T12:27:53,313 ******************************************************************************** 2024-06-28T12:27:53,314 ############################ 2024-06-28T12:27:53,315 # Package would be ignored # 2024-06-28T12:27:53,315 ############################ 2024-06-28T12:27:53,316 Python recognizes 'galaxy.datatypes.display_applications.configs.gbrowse' as an importable package[^1], 2024-06-28T12:27:53,316 but it is absent from setuptools' `packages` configuration. 2024-06-28T12:27:53,317 This leads to an ambiguous overall configuration. If you want to distribute this 2024-06-28T12:27:53,318 package, please make sure that 'galaxy.datatypes.display_applications.configs.gbrowse' is explicitly added 2024-06-28T12:27:53,318 to the `packages` configuration field. 2024-06-28T12:27:53,319 Alternatively, you can also rely on setuptools' discovery methods 2024-06-28T12:27:53,320 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-06-28T12:27:53,320 instead of `find_packages(...)`/`find:`). 2024-06-28T12:27:53,321 You can read more about "package discovery" on setuptools documentation page: 2024-06-28T12:27:53,322 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-06-28T12:27:53,323 If you don't want 'galaxy.datatypes.display_applications.configs.gbrowse' to be distributed and are 2024-06-28T12:27:53,323 already explicitly excluding 'galaxy.datatypes.display_applications.configs.gbrowse' via 2024-06-28T12:27:53,324 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-06-28T12:27:53,324 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-06-28T12:27:53,325 combination with a more fine grained `package-data` configuration. 2024-06-28T12:27:53,326 You can read more about "package data files" on setuptools documentation page: 2024-06-28T12:27:53,327 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-06-28T12:27:53,329 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-06-28T12:27:53,329 even if it does not contain any `.py` files. 2024-06-28T12:27:53,330 On the other hand, currently there is no concept of package data 2024-06-28T12:27:53,330 directory, all directories are treated like packages. 2024-06-28T12:27:53,331 ******************************************************************************** 2024-06-28T12:27:53,332 !! 2024-06-28T12:27:53,332 check.warn(importable) 2024-06-28T12:27:53,333 /tmp/pip-build-env-uy7ni6v2/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'galaxy.datatypes.display_applications.configs.icn3d' is absent from the `packages` configuration. 2024-06-28T12:27:53,334 !! 2024-06-28T12:27:53,334 ******************************************************************************** 2024-06-28T12:27:53,335 ############################ 2024-06-28T12:27:53,336 # Package would be ignored # 2024-06-28T12:27:53,336 ############################ 2024-06-28T12:27:53,337 Python recognizes 'galaxy.datatypes.display_applications.configs.icn3d' as an importable package[^1], 2024-06-28T12:27:53,337 but it is absent from setuptools' `packages` configuration. 2024-06-28T12:27:53,338 This leads to an ambiguous overall configuration. If you want to distribute this 2024-06-28T12:27:53,339 package, please make sure that 'galaxy.datatypes.display_applications.configs.icn3d' is explicitly added 2024-06-28T12:27:53,339 to the `packages` configuration field. 2024-06-28T12:27:53,341 Alternatively, you can also rely on setuptools' discovery methods 2024-06-28T12:27:53,341 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-06-28T12:27:53,342 instead of `find_packages(...)`/`find:`). 2024-06-28T12:27:53,343 You can read more about "package discovery" on setuptools documentation page: 2024-06-28T12:27:53,344 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-06-28T12:27:53,345 If you don't want 'galaxy.datatypes.display_applications.configs.icn3d' to be distributed and are 2024-06-28T12:27:53,345 already explicitly excluding 'galaxy.datatypes.display_applications.configs.icn3d' via 2024-06-28T12:27:53,346 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-06-28T12:27:53,346 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-06-28T12:27:53,347 combination with a more fine grained `package-data` configuration. 2024-06-28T12:27:53,348 You can read more about "package data files" on setuptools documentation page: 2024-06-28T12:27:53,349 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-06-28T12:27:53,350 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-06-28T12:27:53,351 even if it does not contain any `.py` files. 2024-06-28T12:27:53,351 On the other hand, currently there is no concept of package data 2024-06-28T12:27:53,351 directory, all directories are treated like packages. 2024-06-28T12:27:53,352 ******************************************************************************** 2024-06-28T12:27:53,353 !! 2024-06-28T12:27:53,353 check.warn(importable) 2024-06-28T12:27:53,354 /tmp/pip-build-env-uy7ni6v2/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'galaxy.datatypes.display_applications.configs.igb' is absent from the `packages` configuration. 2024-06-28T12:27:53,355 !! 2024-06-28T12:27:53,356 ******************************************************************************** 2024-06-28T12:27:53,356 ############################ 2024-06-28T12:27:53,357 # Package would be ignored # 2024-06-28T12:27:53,357 ############################ 2024-06-28T12:27:53,358 Python recognizes 'galaxy.datatypes.display_applications.configs.igb' as an importable package[^1], 2024-06-28T12:27:53,358 but it is absent from setuptools' `packages` configuration. 2024-06-28T12:27:53,359 This leads to an ambiguous overall configuration. If you want to distribute this 2024-06-28T12:27:53,360 package, please make sure that 'galaxy.datatypes.display_applications.configs.igb' is explicitly added 2024-06-28T12:27:53,360 to the `packages` configuration field. 2024-06-28T12:27:53,361 Alternatively, you can also rely on setuptools' discovery methods 2024-06-28T12:27:53,362 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-06-28T12:27:53,363 instead of `find_packages(...)`/`find:`). 2024-06-28T12:27:53,363 You can read more about "package discovery" on setuptools documentation page: 2024-06-28T12:27:53,364 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-06-28T12:27:53,366 If you don't want 'galaxy.datatypes.display_applications.configs.igb' to be distributed and are 2024-06-28T12:27:53,366 already explicitly excluding 'galaxy.datatypes.display_applications.configs.igb' via 2024-06-28T12:27:53,367 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-06-28T12:27:53,368 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-06-28T12:27:53,368 combination with a more fine grained `package-data` configuration. 2024-06-28T12:27:53,369 You can read more about "package data files" on setuptools documentation page: 2024-06-28T12:27:53,370 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-06-28T12:27:53,372 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-06-28T12:27:53,373 even if it does not contain any `.py` files. 2024-06-28T12:27:53,374 On the other hand, currently there is no concept of package data 2024-06-28T12:27:53,374 directory, all directories are treated like packages. 2024-06-28T12:27:53,375 ******************************************************************************** 2024-06-28T12:27:53,376 !! 2024-06-28T12:27:53,376 check.warn(importable) 2024-06-28T12:27:53,377 /tmp/pip-build-env-uy7ni6v2/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'galaxy.datatypes.display_applications.configs.igv' is absent from the `packages` configuration. 2024-06-28T12:27:53,377 !! 2024-06-28T12:27:53,378 ******************************************************************************** 2024-06-28T12:27:53,379 ############################ 2024-06-28T12:27:53,379 # Package would be ignored # 2024-06-28T12:27:53,380 ############################ 2024-06-28T12:27:53,380 Python recognizes 'galaxy.datatypes.display_applications.configs.igv' as an importable package[^1], 2024-06-28T12:27:53,380 but it is absent from setuptools' `packages` configuration. 2024-06-28T12:27:53,381 This leads to an ambiguous overall configuration. If you want to distribute this 2024-06-28T12:27:53,382 package, please make sure that 'galaxy.datatypes.display_applications.configs.igv' is explicitly added 2024-06-28T12:27:53,382 to the `packages` configuration field. 2024-06-28T12:27:53,384 Alternatively, you can also rely on setuptools' discovery methods 2024-06-28T12:27:53,384 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-06-28T12:27:53,384 instead of `find_packages(...)`/`find:`). 2024-06-28T12:27:53,386 You can read more about "package discovery" on setuptools documentation page: 2024-06-28T12:27:53,386 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-06-28T12:27:53,387 If you don't want 'galaxy.datatypes.display_applications.configs.igv' to be distributed and are 2024-06-28T12:27:53,388 already explicitly excluding 'galaxy.datatypes.display_applications.configs.igv' via 2024-06-28T12:27:53,388 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-06-28T12:27:53,389 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-06-28T12:27:53,389 combination with a more fine grained `package-data` configuration. 2024-06-28T12:27:53,390 You can read more about "package data files" on setuptools documentation page: 2024-06-28T12:27:53,391 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-06-28T12:27:53,393 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-06-28T12:27:53,393 even if it does not contain any `.py` files. 2024-06-28T12:27:53,394 On the other hand, currently there is no concept of package data 2024-06-28T12:27:53,394 directory, all directories are treated like packages. 2024-06-28T12:27:53,395 ******************************************************************************** 2024-06-28T12:27:53,396 !! 2024-06-28T12:27:53,396 check.warn(importable) 2024-06-28T12:27:53,397 /tmp/pip-build-env-uy7ni6v2/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'galaxy.datatypes.display_applications.configs.image' is absent from the `packages` configuration. 2024-06-28T12:27:53,397 !! 2024-06-28T12:27:53,398 ******************************************************************************** 2024-06-28T12:27:53,399 ############################ 2024-06-28T12:27:53,399 # Package would be ignored # 2024-06-28T12:27:53,400 ############################ 2024-06-28T12:27:53,400 Python recognizes 'galaxy.datatypes.display_applications.configs.image' as an importable package[^1], 2024-06-28T12:27:53,401 but it is absent from setuptools' `packages` configuration. 2024-06-28T12:27:53,402 This leads to an ambiguous overall configuration. If you want to distribute this 2024-06-28T12:27:53,403 package, please make sure that 'galaxy.datatypes.display_applications.configs.image' is explicitly added 2024-06-28T12:27:53,403 to the `packages` configuration field. 2024-06-28T12:27:53,404 Alternatively, you can also rely on setuptools' discovery methods 2024-06-28T12:27:53,404 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-06-28T12:27:53,405 instead of `find_packages(...)`/`find:`). 2024-06-28T12:27:53,405 You can read more about "package discovery" on setuptools documentation page: 2024-06-28T12:27:53,406 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-06-28T12:27:53,407 If you don't want 'galaxy.datatypes.display_applications.configs.image' to be distributed and are 2024-06-28T12:27:53,407 already explicitly excluding 'galaxy.datatypes.display_applications.configs.image' via 2024-06-28T12:27:53,408 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-06-28T12:27:53,408 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-06-28T12:27:53,408 combination with a more fine grained `package-data` configuration. 2024-06-28T12:27:53,410 You can read more about "package data files" on setuptools documentation page: 2024-06-28T12:27:53,410 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-06-28T12:27:53,412 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-06-28T12:27:53,412 even if it does not contain any `.py` files. 2024-06-28T12:27:53,413 On the other hand, currently there is no concept of package data 2024-06-28T12:27:53,413 directory, all directories are treated like packages. 2024-06-28T12:27:53,414 ******************************************************************************** 2024-06-28T12:27:53,415 !! 2024-06-28T12:27:53,415 check.warn(importable) 2024-06-28T12:27:53,416 /tmp/pip-build-env-uy7ni6v2/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'galaxy.datatypes.display_applications.configs.intermine' is absent from the `packages` configuration. 2024-06-28T12:27:53,416 !! 2024-06-28T12:27:53,417 ******************************************************************************** 2024-06-28T12:27:53,418 ############################ 2024-06-28T12:27:53,418 # Package would be ignored # 2024-06-28T12:27:53,419 ############################ 2024-06-28T12:27:53,419 Python recognizes 'galaxy.datatypes.display_applications.configs.intermine' as an importable package[^1], 2024-06-28T12:27:53,419 but it is absent from setuptools' `packages` configuration. 2024-06-28T12:27:53,420 This leads to an ambiguous overall configuration. If you want to distribute this 2024-06-28T12:27:53,421 package, please make sure that 'galaxy.datatypes.display_applications.configs.intermine' is explicitly added 2024-06-28T12:27:53,421 to the `packages` configuration field. 2024-06-28T12:27:53,422 Alternatively, you can also rely on setuptools' discovery methods 2024-06-28T12:27:53,423 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-06-28T12:27:53,423 instead of `find_packages(...)`/`find:`). 2024-06-28T12:27:53,424 You can read more about "package discovery" on setuptools documentation page: 2024-06-28T12:27:53,425 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-06-28T12:27:53,427 If you don't want 'galaxy.datatypes.display_applications.configs.intermine' to be distributed and are 2024-06-28T12:27:53,427 already explicitly excluding 'galaxy.datatypes.display_applications.configs.intermine' via 2024-06-28T12:27:53,428 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-06-28T12:27:53,428 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-06-28T12:27:53,429 combination with a more fine grained `package-data` configuration. 2024-06-28T12:27:53,430 You can read more about "package data files" on setuptools documentation page: 2024-06-28T12:27:53,430 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-06-28T12:27:53,432 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-06-28T12:27:53,432 even if it does not contain any `.py` files. 2024-06-28T12:27:53,432 On the other hand, currently there is no concept of package data 2024-06-28T12:27:53,433 directory, all directories are treated like packages. 2024-06-28T12:27:53,433 ******************************************************************************** 2024-06-28T12:27:53,434 !! 2024-06-28T12:27:53,434 check.warn(importable) 2024-06-28T12:27:53,435 /tmp/pip-build-env-uy7ni6v2/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'galaxy.datatypes.display_applications.configs.iobio' is absent from the `packages` configuration. 2024-06-28T12:27:53,435 !! 2024-06-28T12:27:53,436 ******************************************************************************** 2024-06-28T12:27:53,437 ############################ 2024-06-28T12:27:53,438 # Package would be ignored # 2024-06-28T12:27:53,439 ############################ 2024-06-28T12:27:53,439 Python recognizes 'galaxy.datatypes.display_applications.configs.iobio' as an importable package[^1], 2024-06-28T12:27:53,440 but it is absent from setuptools' `packages` configuration. 2024-06-28T12:27:53,442 This leads to an ambiguous overall configuration. If you want to distribute this 2024-06-28T12:27:53,443 package, please make sure that 'galaxy.datatypes.display_applications.configs.iobio' is explicitly added 2024-06-28T12:27:53,443 to the `packages` configuration field. 2024-06-28T12:27:53,445 Alternatively, you can also rely on setuptools' discovery methods 2024-06-28T12:27:53,445 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-06-28T12:27:53,446 instead of `find_packages(...)`/`find:`). 2024-06-28T12:27:53,447 You can read more about "package discovery" on setuptools documentation page: 2024-06-28T12:27:53,449 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-06-28T12:27:53,451 If you don't want 'galaxy.datatypes.display_applications.configs.iobio' to be distributed and are 2024-06-28T12:27:53,451 already explicitly excluding 'galaxy.datatypes.display_applications.configs.iobio' via 2024-06-28T12:27:53,452 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-06-28T12:27:53,453 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-06-28T12:27:53,454 combination with a more fine grained `package-data` configuration. 2024-06-28T12:27:53,455 You can read more about "package data files" on setuptools documentation page: 2024-06-28T12:27:53,456 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-06-28T12:27:53,459 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-06-28T12:27:53,460 even if it does not contain any `.py` files. 2024-06-28T12:27:53,460 On the other hand, currently there is no concept of package data 2024-06-28T12:27:53,461 directory, all directories are treated like packages. 2024-06-28T12:27:53,462 ******************************************************************************** 2024-06-28T12:27:53,463 !! 2024-06-28T12:27:53,464 check.warn(importable) 2024-06-28T12:27:53,464 /tmp/pip-build-env-uy7ni6v2/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'galaxy.datatypes.display_applications.configs.minerva' is absent from the `packages` configuration. 2024-06-28T12:27:53,465 !! 2024-06-28T12:27:53,467 ******************************************************************************** 2024-06-28T12:27:53,468 ############################ 2024-06-28T12:27:53,468 # Package would be ignored # 2024-06-28T12:27:53,469 ############################ 2024-06-28T12:27:53,470 Python recognizes 'galaxy.datatypes.display_applications.configs.minerva' as an importable package[^1], 2024-06-28T12:27:53,471 but it is absent from setuptools' `packages` configuration. 2024-06-28T12:27:53,472 This leads to an ambiguous overall configuration. If you want to distribute this 2024-06-28T12:27:53,473 package, please make sure that 'galaxy.datatypes.display_applications.configs.minerva' is explicitly added 2024-06-28T12:27:53,474 to the `packages` configuration field. 2024-06-28T12:27:53,476 Alternatively, you can also rely on setuptools' discovery methods 2024-06-28T12:27:53,476 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-06-28T12:27:53,477 instead of `find_packages(...)`/`find:`). 2024-06-28T12:27:53,478 You can read more about "package discovery" on setuptools documentation page: 2024-06-28T12:27:53,480 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-06-28T12:27:53,481 If you don't want 'galaxy.datatypes.display_applications.configs.minerva' to be distributed and are 2024-06-28T12:27:53,482 already explicitly excluding 'galaxy.datatypes.display_applications.configs.minerva' via 2024-06-28T12:27:53,483 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-06-28T12:27:53,484 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-06-28T12:27:53,485 combination with a more fine grained `package-data` configuration. 2024-06-28T12:27:53,486 You can read more about "package data files" on setuptools documentation page: 2024-06-28T12:27:53,487 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-06-28T12:27:53,489 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-06-28T12:27:53,489 even if it does not contain any `.py` files. 2024-06-28T12:27:53,490 On the other hand, currently there is no concept of package data 2024-06-28T12:27:53,490 directory, all directories are treated like packages. 2024-06-28T12:27:53,491 ******************************************************************************** 2024-06-28T12:27:53,492 !! 2024-06-28T12:27:53,492 check.warn(importable) 2024-06-28T12:27:53,493 /tmp/pip-build-env-uy7ni6v2/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'galaxy.datatypes.display_applications.configs.qiime.qiime2' is absent from the `packages` configuration. 2024-06-28T12:27:53,493 !! 2024-06-28T12:27:53,494 ******************************************************************************** 2024-06-28T12:27:53,495 ############################ 2024-06-28T12:27:53,496 # Package would be ignored # 2024-06-28T12:27:53,496 ############################ 2024-06-28T12:27:53,497 Python recognizes 'galaxy.datatypes.display_applications.configs.qiime.qiime2' as an importable package[^1], 2024-06-28T12:27:53,497 but it is absent from setuptools' `packages` configuration. 2024-06-28T12:27:53,499 This leads to an ambiguous overall configuration. If you want to distribute this 2024-06-28T12:27:53,499 package, please make sure that 'galaxy.datatypes.display_applications.configs.qiime.qiime2' is explicitly added 2024-06-28T12:27:53,500 to the `packages` configuration field. 2024-06-28T12:27:53,501 Alternatively, you can also rely on setuptools' discovery methods 2024-06-28T12:27:53,501 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-06-28T12:27:53,501 instead of `find_packages(...)`/`find:`). 2024-06-28T12:27:53,503 You can read more about "package discovery" on setuptools documentation page: 2024-06-28T12:27:53,504 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-06-28T12:27:53,505 If you don't want 'galaxy.datatypes.display_applications.configs.qiime.qiime2' to be distributed and are 2024-06-28T12:27:53,505 already explicitly excluding 'galaxy.datatypes.display_applications.configs.qiime.qiime2' via 2024-06-28T12:27:53,505 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-06-28T12:27:53,506 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-06-28T12:27:53,506 combination with a more fine grained `package-data` configuration. 2024-06-28T12:27:53,507 You can read more about "package data files" on setuptools documentation page: 2024-06-28T12:27:53,509 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-06-28T12:27:53,510 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-06-28T12:27:53,511 even if it does not contain any `.py` files. 2024-06-28T12:27:53,511 On the other hand, currently there is no concept of package data 2024-06-28T12:27:53,511 directory, all directories are treated like packages. 2024-06-28T12:27:53,512 ******************************************************************************** 2024-06-28T12:27:53,513 !! 2024-06-28T12:27:53,514 check.warn(importable) 2024-06-28T12:27:53,514 /tmp/pip-build-env-uy7ni6v2/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'galaxy.datatypes.display_applications.configs.rviewer' is absent from the `packages` configuration. 2024-06-28T12:27:53,515 !! 2024-06-28T12:27:53,516 ******************************************************************************** 2024-06-28T12:27:53,517 ############################ 2024-06-28T12:27:53,517 # Package would be ignored # 2024-06-28T12:27:53,518 ############################ 2024-06-28T12:27:53,518 Python recognizes 'galaxy.datatypes.display_applications.configs.rviewer' as an importable package[^1], 2024-06-28T12:27:53,519 but it is absent from setuptools' `packages` configuration. 2024-06-28T12:27:53,520 This leads to an ambiguous overall configuration. If you want to distribute this 2024-06-28T12:27:53,520 package, please make sure that 'galaxy.datatypes.display_applications.configs.rviewer' is explicitly added 2024-06-28T12:27:53,521 to the `packages` configuration field. 2024-06-28T12:27:53,522 Alternatively, you can also rely on setuptools' discovery methods 2024-06-28T12:27:53,523 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-06-28T12:27:53,523 instead of `find_packages(...)`/`find:`). 2024-06-28T12:27:53,524 You can read more about "package discovery" on setuptools documentation page: 2024-06-28T12:27:53,526 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-06-28T12:27:53,526 If you don't want 'galaxy.datatypes.display_applications.configs.rviewer' to be distributed and are 2024-06-28T12:27:53,527 already explicitly excluding 'galaxy.datatypes.display_applications.configs.rviewer' via 2024-06-28T12:27:53,528 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-06-28T12:27:53,528 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-06-28T12:27:53,529 combination with a more fine grained `package-data` configuration. 2024-06-28T12:27:53,530 You can read more about "package data files" on setuptools documentation page: 2024-06-28T12:27:53,531 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-06-28T12:27:53,532 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-06-28T12:27:53,533 even if it does not contain any `.py` files. 2024-06-28T12:27:53,533 On the other hand, currently there is no concept of package data 2024-06-28T12:27:53,534 directory, all directories are treated like packages. 2024-06-28T12:27:53,534 ******************************************************************************** 2024-06-28T12:27:53,535 !! 2024-06-28T12:27:53,536 check.warn(importable) 2024-06-28T12:27:53,536 /tmp/pip-build-env-uy7ni6v2/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'galaxy.datatypes.display_applications.configs.ucsc' is absent from the `packages` configuration. 2024-06-28T12:27:53,537 !! 2024-06-28T12:27:53,538 ******************************************************************************** 2024-06-28T12:27:53,538 ############################ 2024-06-28T12:27:53,539 # Package would be ignored # 2024-06-28T12:27:53,539 ############################ 2024-06-28T12:27:53,540 Python recognizes 'galaxy.datatypes.display_applications.configs.ucsc' as an importable package[^1], 2024-06-28T12:27:53,540 but it is absent from setuptools' `packages` configuration. 2024-06-28T12:27:53,541 This leads to an ambiguous overall configuration. If you want to distribute this 2024-06-28T12:27:53,542 package, please make sure that 'galaxy.datatypes.display_applications.configs.ucsc' is explicitly added 2024-06-28T12:27:53,542 to the `packages` configuration field. 2024-06-28T12:27:53,543 Alternatively, you can also rely on setuptools' discovery methods 2024-06-28T12:27:53,543 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-06-28T12:27:53,544 instead of `find_packages(...)`/`find:`). 2024-06-28T12:27:53,545 You can read more about "package discovery" on setuptools documentation page: 2024-06-28T12:27:53,546 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-06-28T12:27:53,547 If you don't want 'galaxy.datatypes.display_applications.configs.ucsc' to be distributed and are 2024-06-28T12:27:53,548 already explicitly excluding 'galaxy.datatypes.display_applications.configs.ucsc' via 2024-06-28T12:27:53,548 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-06-28T12:27:53,549 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-06-28T12:27:53,549 combination with a more fine grained `package-data` configuration. 2024-06-28T12:27:53,550 You can read more about "package data files" on setuptools documentation page: 2024-06-28T12:27:53,552 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-06-28T12:27:53,553 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-06-28T12:27:53,554 even if it does not contain any `.py` files. 2024-06-28T12:27:53,554 On the other hand, currently there is no concept of package data 2024-06-28T12:27:53,555 directory, all directories are treated like packages. 2024-06-28T12:27:53,555 ******************************************************************************** 2024-06-28T12:27:53,557 !! 2024-06-28T12:27:53,558 check.warn(importable) 2024-06-28T12:27:53,558 /tmp/pip-build-env-uy7ni6v2/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'galaxy.datatypes.display_applications.xsd' is absent from the `packages` configuration. 2024-06-28T12:27:53,559 !! 2024-06-28T12:27:53,560 ******************************************************************************** 2024-06-28T12:27:53,560 ############################ 2024-06-28T12:27:53,561 # Package would be ignored # 2024-06-28T12:27:53,561 ############################ 2024-06-28T12:27:53,561 Python recognizes 'galaxy.datatypes.display_applications.xsd' as an importable package[^1], 2024-06-28T12:27:53,562 but it is absent from setuptools' `packages` configuration. 2024-06-28T12:27:53,563 This leads to an ambiguous overall configuration. If you want to distribute this 2024-06-28T12:27:53,563 package, please make sure that 'galaxy.datatypes.display_applications.xsd' is explicitly added 2024-06-28T12:27:53,564 to the `packages` configuration field. 2024-06-28T12:27:53,565 Alternatively, you can also rely on setuptools' discovery methods 2024-06-28T12:27:53,565 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-06-28T12:27:53,565 instead of `find_packages(...)`/`find:`). 2024-06-28T12:27:53,566 You can read more about "package discovery" on setuptools documentation page: 2024-06-28T12:27:53,567 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-06-28T12:27:53,568 If you don't want 'galaxy.datatypes.display_applications.xsd' to be distributed and are 2024-06-28T12:27:53,569 already explicitly excluding 'galaxy.datatypes.display_applications.xsd' via 2024-06-28T12:27:53,569 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-06-28T12:27:53,570 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-06-28T12:27:53,570 combination with a more fine grained `package-data` configuration. 2024-06-28T12:27:53,571 You can read more about "package data files" on setuptools documentation page: 2024-06-28T12:27:53,573 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-06-28T12:27:53,574 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-06-28T12:27:53,575 even if it does not contain any `.py` files. 2024-06-28T12:27:53,575 On the other hand, currently there is no concept of package data 2024-06-28T12:27:53,576 directory, all directories are treated like packages. 2024-06-28T12:27:53,576 ******************************************************************************** 2024-06-28T12:27:53,578 !! 2024-06-28T12:27:53,578 check.warn(importable) 2024-06-28T12:27:53,579 /tmp/pip-build-env-uy7ni6v2/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'galaxy.model.migrations.alembic' is absent from the `packages` configuration. 2024-06-28T12:27:53,579 !! 2024-06-28T12:27:53,580 ******************************************************************************** 2024-06-28T12:27:53,581 ############################ 2024-06-28T12:27:53,581 # Package would be ignored # 2024-06-28T12:27:53,582 ############################ 2024-06-28T12:27:53,583 Python recognizes 'galaxy.model.migrations.alembic' as an importable package[^1], 2024-06-28T12:27:53,583 but it is absent from setuptools' `packages` configuration. 2024-06-28T12:27:53,584 This leads to an ambiguous overall configuration. If you want to distribute this 2024-06-28T12:27:53,585 package, please make sure that 'galaxy.model.migrations.alembic' is explicitly added 2024-06-28T12:27:53,586 to the `packages` configuration field. 2024-06-28T12:27:53,587 Alternatively, you can also rely on setuptools' discovery methods 2024-06-28T12:27:53,587 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-06-28T12:27:53,588 instead of `find_packages(...)`/`find:`). 2024-06-28T12:27:53,589 You can read more about "package discovery" on setuptools documentation page: 2024-06-28T12:27:53,590 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-06-28T12:27:53,590 If you don't want 'galaxy.model.migrations.alembic' to be distributed and are 2024-06-28T12:27:53,591 already explicitly excluding 'galaxy.model.migrations.alembic' via 2024-06-28T12:27:53,591 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-06-28T12:27:53,592 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-06-28T12:27:53,592 combination with a more fine grained `package-data` configuration. 2024-06-28T12:27:53,593 You can read more about "package data files" on setuptools documentation page: 2024-06-28T12:27:53,594 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-06-28T12:27:53,595 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-06-28T12:27:53,596 even if it does not contain any `.py` files. 2024-06-28T12:27:53,596 On the other hand, currently there is no concept of package data 2024-06-28T12:27:53,597 directory, all directories are treated like packages. 2024-06-28T12:27:53,597 ******************************************************************************** 2024-06-28T12:27:53,598 !! 2024-06-28T12:27:53,598 check.warn(importable) 2024-06-28T12:27:53,599 /tmp/pip-build-env-uy7ni6v2/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'galaxy.model.migrations.alembic.versions_gxy' is absent from the `packages` configuration. 2024-06-28T12:27:53,599 !! 2024-06-28T12:27:53,601 ******************************************************************************** 2024-06-28T12:27:53,601 ############################ 2024-06-28T12:27:53,601 # Package would be ignored # 2024-06-28T12:27:53,602 ############################ 2024-06-28T12:27:53,602 Python recognizes 'galaxy.model.migrations.alembic.versions_gxy' as an importable package[^1], 2024-06-28T12:27:53,603 but it is absent from setuptools' `packages` configuration. 2024-06-28T12:27:53,604 This leads to an ambiguous overall configuration. If you want to distribute this 2024-06-28T12:27:53,604 package, please make sure that 'galaxy.model.migrations.alembic.versions_gxy' is explicitly added 2024-06-28T12:27:53,605 to the `packages` configuration field. 2024-06-28T12:27:53,606 Alternatively, you can also rely on setuptools' discovery methods 2024-06-28T12:27:53,606 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-06-28T12:27:53,607 instead of `find_packages(...)`/`find:`). 2024-06-28T12:27:53,608 You can read more about "package discovery" on setuptools documentation page: 2024-06-28T12:27:53,609 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-06-28T12:27:53,610 If you don't want 'galaxy.model.migrations.alembic.versions_gxy' to be distributed and are 2024-06-28T12:27:53,611 already explicitly excluding 'galaxy.model.migrations.alembic.versions_gxy' via 2024-06-28T12:27:53,611 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-06-28T12:27:53,612 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-06-28T12:27:53,612 combination with a more fine grained `package-data` configuration. 2024-06-28T12:27:53,613 You can read more about "package data files" on setuptools documentation page: 2024-06-28T12:27:53,614 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-06-28T12:27:53,616 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-06-28T12:27:53,616 even if it does not contain any `.py` files. 2024-06-28T12:27:53,616 On the other hand, currently there is no concept of package data 2024-06-28T12:27:53,617 directory, all directories are treated like packages. 2024-06-28T12:27:53,617 ******************************************************************************** 2024-06-28T12:27:53,618 !! 2024-06-28T12:27:53,619 check.warn(importable) 2024-06-28T12:27:53,619 /tmp/pip-build-env-uy7ni6v2/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'galaxy.model.migrations.alembic.versions_tsi' is absent from the `packages` configuration. 2024-06-28T12:27:53,619 !! 2024-06-28T12:27:53,620 ******************************************************************************** 2024-06-28T12:27:53,621 ############################ 2024-06-28T12:27:53,622 # Package would be ignored # 2024-06-28T12:27:53,622 ############################ 2024-06-28T12:27:53,623 Python recognizes 'galaxy.model.migrations.alembic.versions_tsi' as an importable package[^1], 2024-06-28T12:27:53,623 but it is absent from setuptools' `packages` configuration. 2024-06-28T12:27:53,624 This leads to an ambiguous overall configuration. If you want to distribute this 2024-06-28T12:27:53,625 package, please make sure that 'galaxy.model.migrations.alembic.versions_tsi' is explicitly added 2024-06-28T12:27:53,625 to the `packages` configuration field. 2024-06-28T12:27:53,626 Alternatively, you can also rely on setuptools' discovery methods 2024-06-28T12:27:53,627 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-06-28T12:27:53,627 instead of `find_packages(...)`/`find:`). 2024-06-28T12:27:53,628 You can read more about "package discovery" on setuptools documentation page: 2024-06-28T12:27:53,629 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-06-28T12:27:53,630 If you don't want 'galaxy.model.migrations.alembic.versions_tsi' to be distributed and are 2024-06-28T12:27:53,630 already explicitly excluding 'galaxy.model.migrations.alembic.versions_tsi' via 2024-06-28T12:27:53,631 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-06-28T12:27:53,631 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-06-28T12:27:53,632 combination with a more fine grained `package-data` configuration. 2024-06-28T12:27:53,633 You can read more about "package data files" on setuptools documentation page: 2024-06-28T12:27:53,634 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-06-28T12:27:53,636 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-06-28T12:27:53,636 even if it does not contain any `.py` files. 2024-06-28T12:27:53,637 On the other hand, currently there is no concept of package data 2024-06-28T12:27:53,637 directory, all directories are treated like packages. 2024-06-28T12:27:53,638 ******************************************************************************** 2024-06-28T12:27:53,639 !! 2024-06-28T12:27:53,640 check.warn(importable) 2024-06-28T12:27:53,640 copying galaxy/py.typed -> build/lib/galaxy 2024-06-28T12:27:53,641 copying galaxy/datatypes/set_metadata_tool.xml -> build/lib/galaxy/datatypes 2024-06-28T12:27:53,642 copying galaxy/model/migrations/README.md -> build/lib/galaxy/model/migrations 2024-06-28T12:27:53,642 copying galaxy/model/migrations/alembic.ini -> build/lib/galaxy/model/migrations 2024-06-28T12:27:53,643 creating build/lib/galaxy/model/migrations/alembic 2024-06-28T12:27:53,644 copying galaxy/model/migrations/alembic/env.py -> build/lib/galaxy/model/migrations/alembic 2024-06-28T12:27:53,644 copying galaxy/model/migrations/alembic/script.py.mako -> build/lib/galaxy/model/migrations/alembic 2024-06-28T12:27:53,644 creating build/lib/galaxy/model/migrations/alembic/versions_gxy 2024-06-28T12:27:53,645 copying galaxy/model/migrations/alembic/versions_gxy/186d4835587b_drop_job_state_history_update_time_.py -> build/lib/galaxy/model/migrations/alembic/versions_gxy 2024-06-28T12:27:53,645 copying galaxy/model/migrations/alembic/versions_gxy/2d749563e1fe_add_notification_system_tables.py -> build/lib/galaxy/model/migrations/alembic/versions_gxy 2024-06-28T12:27:53,646 copying galaxy/model/migrations/alembic/versions_gxy/2dc3386d091f_add_indexes_for_workflow_comment_.py -> build/lib/galaxy/model/migrations/alembic/versions_gxy 2024-06-28T12:27:53,646 copying galaxy/model/migrations/alembic/versions_gxy/3100452fa030_add_workflow_invocation_message_table.py -> build/lib/galaxy/model/migrations/alembic/versions_gxy 2024-06-28T12:27:53,647 copying galaxy/model/migrations/alembic/versions_gxy/3356bc2ecfc4_drop_view.py -> build/lib/galaxy/model/migrations/alembic/versions_gxy 2024-06-28T12:27:53,647 copying galaxy/model/migrations/alembic/versions_gxy/3a2914d703ca_add_index_wf_r_s_s__workflow_invocation_.py -> build/lib/galaxy/model/migrations/alembic/versions_gxy 2024-06-28T12:27:53,648 copying galaxy/model/migrations/alembic/versions_gxy/460d0ecd1dd8_.py -> build/lib/galaxy/model/migrations/alembic/versions_gxy 2024-06-28T12:27:53,648 copying galaxy/model/migrations/alembic/versions_gxy/518c8438a91b_add_when_expression_column.py -> build/lib/galaxy/model/migrations/alembic/versions_gxy 2024-06-28T12:27:53,649 copying galaxy/model/migrations/alembic/versions_gxy/55f02fd8ab6c_add_index_on_hda_extension.py -> build/lib/galaxy/model/migrations/alembic/versions_gxy 2024-06-28T12:27:53,649 copying galaxy/model/migrations/alembic/versions_gxy/59e024ceaca1_add_export_association_table.py -> build/lib/galaxy/model/migrations/alembic/versions_gxy 2024-06-28T12:27:53,650 copying galaxy/model/migrations/alembic/versions_gxy/6a67bf27e6a6_deferred_data_tables.py -> build/lib/galaxy/model/migrations/alembic/versions_gxy 2024-06-28T12:27:53,650 copying galaxy/model/migrations/alembic/versions_gxy/8a19186a6ee7_add_columns_to_interactivetool_entry_point.py -> build/lib/galaxy/model/migrations/alembic/versions_gxy 2024-06-28T12:27:53,651 copying galaxy/model/migrations/alembic/versions_gxy/92fb564c7095_.py -> build/lib/galaxy/model/migrations/alembic/versions_gxy 2024-06-28T12:27:53,651 copying galaxy/model/migrations/alembic/versions_gxy/9540a051226e_preferred_object_store_ids.py -> build/lib/galaxy/model/migrations/alembic/versions_gxy 2024-06-28T12:27:53,652 copying galaxy/model/migrations/alembic/versions_gxy/987ce9839ecb_create_celery_user_rate_limit_table.py -> build/lib/galaxy/model/migrations/alembic/versions_gxy 2024-06-28T12:27:53,653 copying galaxy/model/migrations/alembic/versions_gxy/b182f655505f_add_workflow_source_metadata_column.py -> build/lib/galaxy/model/migrations/alembic/versions_gxy 2024-06-28T12:27:53,653 copying galaxy/model/migrations/alembic/versions_gxy/b855b714e8b8_make_api_keys_deleted_non_nullable.py -> build/lib/galaxy/model/migrations/alembic/versions_gxy 2024-06-28T12:27:53,654 copying galaxy/model/migrations/alembic/versions_gxy/c39f1de47a04_add_skipped_state_to_collection_job_.py -> build/lib/galaxy/model/migrations/alembic/versions_gxy 2024-06-28T12:27:53,654 copying galaxy/model/migrations/alembic/versions_gxy/caa7742f7bca_add_index_wf_r_i_p__workflow_invocation_.py -> build/lib/galaxy/model/migrations/alembic/versions_gxy 2024-06-28T12:27:53,655 copying galaxy/model/migrations/alembic/versions_gxy/d0583094c8cd_add_quota_source_labels.py -> build/lib/galaxy/model/migrations/alembic/versions_gxy 2024-06-28T12:27:53,655 copying galaxy/model/migrations/alembic/versions_gxy/ddbdbc40bdc1_add_workflow_comment_table.py -> build/lib/galaxy/model/migrations/alembic/versions_gxy 2024-06-28T12:27:53,656 copying galaxy/model/migrations/alembic/versions_gxy/e0561d5fc8c7_add_archived_columns_to_history.py -> build/lib/galaxy/model/migrations/alembic/versions_gxy 2024-06-28T12:27:53,656 copying galaxy/model/migrations/alembic/versions_gxy/e0e3bb173ee6_add_column_deleted_to_api_keys.py -> build/lib/galaxy/model/migrations/alembic/versions_gxy 2024-06-28T12:27:53,657 copying galaxy/model/migrations/alembic/versions_gxy/e7b6dcb09efd_create_gxy_branch.py -> build/lib/galaxy/model/migrations/alembic/versions_gxy 2024-06-28T12:27:53,658 copying galaxy/model/migrations/alembic/versions_gxy/e93c5d0b47a9_alter_column_external_user_id.py -> build/lib/galaxy/model/migrations/alembic/versions_gxy 2024-06-28T12:27:53,658 creating build/lib/galaxy/model/migrations/alembic/versions_tsi 2024-06-28T12:27:53,658 copying galaxy/model/migrations/alembic/versions_tsi/d4a650f47a3c_create_tsi_branch.py -> build/lib/galaxy/model/migrations/alembic/versions_tsi 2024-06-28T12:27:53,659 copying galaxy/datatypes/converters/bam_to_bai.xml -> build/lib/galaxy/datatypes/converters 2024-06-28T12:27:53,659 copying galaxy/datatypes/converters/bam_to_bigwig_converter.xml -> build/lib/galaxy/datatypes/converters 2024-06-28T12:27:53,660 copying galaxy/datatypes/converters/bcf_bcf_uncompressed_converter.xml -> build/lib/galaxy/datatypes/converters 2024-06-28T12:27:53,660 copying galaxy/datatypes/converters/bed_gff_or_vcf_to_bigwig_converter.xml -> build/lib/galaxy/datatypes/converters 2024-06-28T12:27:53,661 copying galaxy/datatypes/converters/bed_to_fli_converter.xml -> build/lib/galaxy/datatypes/converters 2024-06-28T12:27:53,661 copying galaxy/datatypes/converters/bed_to_gff_converter.xml -> build/lib/galaxy/datatypes/converters 2024-06-28T12:27:53,662 copying galaxy/datatypes/converters/bed_to_interval_index_converter.xml -> build/lib/galaxy/datatypes/converters 2024-06-28T12:27:53,662 copying galaxy/datatypes/converters/bedgraph_to_bigwig_converter.xml -> build/lib/galaxy/datatypes/converters 2024-06-28T12:27:53,662 copying galaxy/datatypes/converters/bigwig_to_wig_converter.xml -> build/lib/galaxy/datatypes/converters 2024-06-28T12:27:53,663 copying galaxy/datatypes/converters/biom.xml -> build/lib/galaxy/datatypes/converters 2024-06-28T12:27:53,663 copying galaxy/datatypes/converters/bz2_to_uncompressed.xml -> build/lib/galaxy/datatypes/converters 2024-06-28T12:27:53,664 copying galaxy/datatypes/converters/cml_to_smi_converter.xml -> build/lib/galaxy/datatypes/converters 2024-06-28T12:27:53,664 copying galaxy/datatypes/converters/cram_to_bam_converter.xml -> build/lib/galaxy/datatypes/converters 2024-06-28T12:27:53,665 copying galaxy/datatypes/converters/csv_to_tabular.xml -> build/lib/galaxy/datatypes/converters 2024-06-28T12:27:53,666 copying galaxy/datatypes/converters/fasta_to_2bit.xml -> build/lib/galaxy/datatypes/converters 2024-06-28T12:27:53,666 copying galaxy/datatypes/converters/fasta_to_bowtie_base_index_converter.xml -> build/lib/galaxy/datatypes/converters 2024-06-28T12:27:53,667 copying galaxy/datatypes/converters/fasta_to_bowtie_color_index_converter.xml -> build/lib/galaxy/datatypes/converters 2024-06-28T12:27:53,667 copying galaxy/datatypes/converters/fasta_to_fai.xml -> build/lib/galaxy/datatypes/converters 2024-06-28T12:27:53,668 copying galaxy/datatypes/converters/fasta_to_len.xml -> build/lib/galaxy/datatypes/converters 2024-06-28T12:27:53,668 copying galaxy/datatypes/converters/fasta_to_tabular_converter.xml -> build/lib/galaxy/datatypes/converters 2024-06-28T12:27:53,669 copying galaxy/datatypes/converters/fastq_to_fqtoc.xml -> build/lib/galaxy/datatypes/converters 2024-06-28T12:27:53,669 copying galaxy/datatypes/converters/fastqsolexa_to_fasta_converter.xml -> build/lib/galaxy/datatypes/converters 2024-06-28T12:27:53,670 copying galaxy/datatypes/converters/fastqsolexa_to_qual_converter.xml -> build/lib/galaxy/datatypes/converters 2024-06-28T12:27:53,671 copying galaxy/datatypes/converters/gff_to_bed_converter.xml -> build/lib/galaxy/datatypes/converters 2024-06-28T12:27:53,672 copying galaxy/datatypes/converters/gff_to_fli_converter.xml -> build/lib/galaxy/datatypes/converters 2024-06-28T12:27:53,672 copying galaxy/datatypes/converters/gff_to_interval_index_converter.xml -> build/lib/galaxy/datatypes/converters 2024-06-28T12:27:53,672 copying galaxy/datatypes/converters/gro_to_pdb.xml -> build/lib/galaxy/datatypes/converters 2024-06-28T12:27:53,673 copying galaxy/datatypes/converters/gz_to_uncompressed.xml -> build/lib/galaxy/datatypes/converters 2024-06-28T12:27:53,673 copying galaxy/datatypes/converters/inchi_to_mol_converter.xml -> build/lib/galaxy/datatypes/converters 2024-06-28T12:27:53,674 copying galaxy/datatypes/converters/interval_to_bed12_converter.xml -> build/lib/galaxy/datatypes/converters 2024-06-28T12:27:53,674 copying galaxy/datatypes/converters/interval_to_bed6_converter.xml -> build/lib/galaxy/datatypes/converters 2024-06-28T12:27:53,674 copying galaxy/datatypes/converters/interval_to_bed_converter.xml -> build/lib/galaxy/datatypes/converters 2024-06-28T12:27:53,675 copying galaxy/datatypes/converters/interval_to_bedstrict_converter.xml -> build/lib/galaxy/datatypes/converters 2024-06-28T12:27:53,675 copying galaxy/datatypes/converters/interval_to_bgzip_converter.xml -> build/lib/galaxy/datatypes/converters 2024-06-28T12:27:53,676 copying galaxy/datatypes/converters/interval_to_bigwig_converter.xml -> build/lib/galaxy/datatypes/converters 2024-06-28T12:27:53,676 copying galaxy/datatypes/converters/interval_to_interval_index_converter.xml -> build/lib/galaxy/datatypes/converters 2024-06-28T12:27:53,677 copying galaxy/datatypes/converters/interval_to_tabix_converter.xml -> build/lib/galaxy/datatypes/converters 2024-06-28T12:27:53,677 copying galaxy/datatypes/converters/len_to_linecount.xml -> build/lib/galaxy/datatypes/converters 2024-06-28T12:27:53,678 copying galaxy/datatypes/converters/lped_to_fped_converter.xml -> build/lib/galaxy/datatypes/converters 2024-06-28T12:27:53,678 copying galaxy/datatypes/converters/lped_to_pbed_converter.xml -> build/lib/galaxy/datatypes/converters 2024-06-28T12:27:53,679 copying galaxy/datatypes/converters/maf_to_fasta_converter.xml -> build/lib/galaxy/datatypes/converters 2024-06-28T12:27:53,679 copying galaxy/datatypes/converters/maf_to_interval_converter.xml -> build/lib/galaxy/datatypes/converters 2024-06-28T12:27:53,680 copying galaxy/datatypes/converters/mdconvert.xml -> build/lib/galaxy/datatypes/converters 2024-06-28T12:27:53,680 copying galaxy/datatypes/converters/mol2_to_mol_converter.xml -> build/lib/galaxy/datatypes/converters 2024-06-28T12:27:53,681 copying galaxy/datatypes/converters/molecules_converter.xml -> build/lib/galaxy/datatypes/converters 2024-06-28T12:27:53,681 copying galaxy/datatypes/converters/neostorezip_to_neostore_converter.xml -> build/lib/galaxy/datatypes/converters 2024-06-28T12:27:53,682 copying galaxy/datatypes/converters/parquet_to_csv_converter.xml -> build/lib/galaxy/datatypes/converters 2024-06-28T12:27:53,682 copying galaxy/datatypes/converters/pbed_ldreduced_converter.xml -> build/lib/galaxy/datatypes/converters 2024-06-28T12:27:53,683 copying galaxy/datatypes/converters/pbed_to_lped_converter.xml -> build/lib/galaxy/datatypes/converters 2024-06-28T12:27:53,683 copying galaxy/datatypes/converters/pdb_to_gro.xml -> build/lib/galaxy/datatypes/converters 2024-06-28T12:27:53,684 copying galaxy/datatypes/converters/picard_interval_list_to_bed6_converter.xml -> build/lib/galaxy/datatypes/converters 2024-06-28T12:27:53,684 copying galaxy/datatypes/converters/pileup_to_interval_index_converter.xml -> build/lib/galaxy/datatypes/converters 2024-06-28T12:27:53,685 copying galaxy/datatypes/converters/ref_to_seq_taxonomy_converter.xml -> build/lib/galaxy/datatypes/converters 2024-06-28T12:27:53,686 copying galaxy/datatypes/converters/sam_to_bigwig_converter.xml -> build/lib/galaxy/datatypes/converters 2024-06-28T12:27:53,686 copying galaxy/datatypes/converters/sam_to_unsorted_bam.xml -> build/lib/galaxy/datatypes/converters 2024-06-28T12:27:53,687 copying galaxy/datatypes/converters/smi_to_mol_converter.xml -> build/lib/galaxy/datatypes/converters 2024-06-28T12:27:53,688 copying galaxy/datatypes/converters/smi_to_smi_converter.xml -> build/lib/galaxy/datatypes/converters 2024-06-28T12:27:53,688 copying galaxy/datatypes/converters/tabular_to_csv.xml -> build/lib/galaxy/datatypes/converters 2024-06-28T12:27:53,689 copying galaxy/datatypes/converters/tabular_to_dbnsfp.xml -> build/lib/galaxy/datatypes/converters 2024-06-28T12:27:53,689 copying galaxy/datatypes/converters/tar_to_directory.xml -> build/lib/galaxy/datatypes/converters 2024-06-28T12:27:53,690 copying galaxy/datatypes/converters/to_coordinate_sorted_bam.xml -> build/lib/galaxy/datatypes/converters 2024-06-28T12:27:53,690 copying galaxy/datatypes/converters/to_qname_sorted_bam.xml -> build/lib/galaxy/datatypes/converters 2024-06-28T12:27:53,690 copying galaxy/datatypes/converters/uncompressed_to_gz.xml -> build/lib/galaxy/datatypes/converters 2024-06-28T12:27:53,691 copying galaxy/datatypes/converters/vcf_bgzip_to_tabix_converter.xml -> build/lib/galaxy/datatypes/converters 2024-06-28T12:27:53,691 copying galaxy/datatypes/converters/vcf_to_interval_index_converter.xml -> build/lib/galaxy/datatypes/converters 2024-06-28T12:27:53,692 copying galaxy/datatypes/converters/vcf_to_vcf_bgzip_converter.xml -> build/lib/galaxy/datatypes/converters 2024-06-28T12:27:53,692 copying galaxy/datatypes/converters/wig_to_bigwig_converter.xml -> build/lib/galaxy/datatypes/converters 2024-06-28T12:27:53,692 copying galaxy/datatypes/converters/wiggle_to_simple_converter.xml -> build/lib/galaxy/datatypes/converters 2024-06-28T12:27:53,693 creating build/lib/galaxy/datatypes/display_applications/configs 2024-06-28T12:27:53,693 creating build/lib/galaxy/datatypes/display_applications/configs/biom 2024-06-28T12:27:53,694 copying galaxy/datatypes/display_applications/configs/biom/biom_simple.xml -> build/lib/galaxy/datatypes/display_applications/configs/biom 2024-06-28T12:27:53,694 creating build/lib/galaxy/datatypes/display_applications/configs/ensembl 2024-06-28T12:27:53,695 copying galaxy/datatypes/display_applications/configs/ensembl/ensembl_bam.xml -> build/lib/galaxy/datatypes/display_applications/configs/ensembl 2024-06-28T12:27:53,696 copying galaxy/datatypes/display_applications/configs/ensembl/ensembl_gff.xml -> build/lib/galaxy/datatypes/display_applications/configs/ensembl 2024-06-28T12:27:53,696 copying galaxy/datatypes/display_applications/configs/ensembl/ensembl_interval_as_bed.xml -> build/lib/galaxy/datatypes/display_applications/configs/ensembl 2024-06-28T12:27:53,697 creating build/lib/galaxy/datatypes/display_applications/configs/gbrowse 2024-06-28T12:27:53,698 copying galaxy/datatypes/display_applications/configs/gbrowse/gbrowse_gff.xml -> build/lib/galaxy/datatypes/display_applications/configs/gbrowse 2024-06-28T12:27:53,698 copying galaxy/datatypes/display_applications/configs/gbrowse/gbrowse_interval_as_bed.xml -> build/lib/galaxy/datatypes/display_applications/configs/gbrowse 2024-06-28T12:27:53,699 copying galaxy/datatypes/display_applications/configs/gbrowse/gbrowse_wig.xml -> build/lib/galaxy/datatypes/display_applications/configs/gbrowse 2024-06-28T12:27:53,699 creating build/lib/galaxy/datatypes/display_applications/configs/icn3d 2024-06-28T12:27:53,700 copying galaxy/datatypes/display_applications/configs/icn3d/icn3d_simple.xml -> build/lib/galaxy/datatypes/display_applications/configs/icn3d 2024-06-28T12:27:53,701 creating build/lib/galaxy/datatypes/display_applications/configs/igb 2024-06-28T12:27:53,701 copying galaxy/datatypes/display_applications/configs/igb/bam.xml -> build/lib/galaxy/datatypes/display_applications/configs/igb 2024-06-28T12:27:53,702 copying galaxy/datatypes/display_applications/configs/igb/bb.xml -> build/lib/galaxy/datatypes/display_applications/configs/igb 2024-06-28T12:27:53,702 copying galaxy/datatypes/display_applications/configs/igb/bed.xml -> build/lib/galaxy/datatypes/display_applications/configs/igb 2024-06-28T12:27:53,703 copying galaxy/datatypes/display_applications/configs/igb/bedgraph.xml -> build/lib/galaxy/datatypes/display_applications/configs/igb 2024-06-28T12:27:53,704 copying galaxy/datatypes/display_applications/configs/igb/bigwig.xml -> build/lib/galaxy/datatypes/display_applications/configs/igb 2024-06-28T12:27:53,704 copying galaxy/datatypes/display_applications/configs/igb/gtf.xml -> build/lib/galaxy/datatypes/display_applications/configs/igb 2024-06-28T12:27:53,705 copying galaxy/datatypes/display_applications/configs/igb/wig.xml -> build/lib/galaxy/datatypes/display_applications/configs/igb 2024-06-28T12:27:53,705 creating build/lib/galaxy/datatypes/display_applications/configs/igv 2024-06-28T12:27:53,706 copying galaxy/datatypes/display_applications/configs/igv/bam.xml -> build/lib/galaxy/datatypes/display_applications/configs/igv 2024-06-28T12:27:53,706 copying galaxy/datatypes/display_applications/configs/igv/bigwig.xml -> build/lib/galaxy/datatypes/display_applications/configs/igv 2024-06-28T12:27:53,707 copying galaxy/datatypes/display_applications/configs/igv/genbank.xml -> build/lib/galaxy/datatypes/display_applications/configs/igv 2024-06-28T12:27:53,707 copying galaxy/datatypes/display_applications/configs/igv/genome_fasta.xml -> build/lib/galaxy/datatypes/display_applications/configs/igv 2024-06-28T12:27:53,708 copying galaxy/datatypes/display_applications/configs/igv/gff.xml -> build/lib/galaxy/datatypes/display_applications/configs/igv 2024-06-28T12:27:53,708 copying galaxy/datatypes/display_applications/configs/igv/interval_as_bed.xml -> build/lib/galaxy/datatypes/display_applications/configs/igv 2024-06-28T12:27:53,709 copying galaxy/datatypes/display_applications/configs/igv/vcf.xml -> build/lib/galaxy/datatypes/display_applications/configs/igv 2024-06-28T12:27:53,709 creating build/lib/galaxy/datatypes/display_applications/configs/image 2024-06-28T12:27:53,710 copying galaxy/datatypes/display_applications/configs/image/avivator.xml -> build/lib/galaxy/datatypes/display_applications/configs/image 2024-06-28T12:27:53,710 creating build/lib/galaxy/datatypes/display_applications/configs/intermine 2024-06-28T12:27:53,711 copying galaxy/datatypes/display_applications/configs/intermine/intermine_simple.xml -> build/lib/galaxy/datatypes/display_applications/configs/intermine 2024-06-28T12:27:53,711 creating build/lib/galaxy/datatypes/display_applications/configs/iobio 2024-06-28T12:27:53,712 copying galaxy/datatypes/display_applications/configs/iobio/bam.xml -> build/lib/galaxy/datatypes/display_applications/configs/iobio 2024-06-28T12:27:53,713 copying galaxy/datatypes/display_applications/configs/iobio/vcf.xml -> build/lib/galaxy/datatypes/display_applications/configs/iobio 2024-06-28T12:27:53,713 creating build/lib/galaxy/datatypes/display_applications/configs/minerva 2024-06-28T12:27:53,714 copying galaxy/datatypes/display_applications/configs/minerva/tabular.xml -> build/lib/galaxy/datatypes/display_applications/configs/minerva 2024-06-28T12:27:53,714 creating build/lib/galaxy/datatypes/display_applications/configs/qiime 2024-06-28T12:27:53,715 creating build/lib/galaxy/datatypes/display_applications/configs/qiime/qiime2 2024-06-28T12:27:53,715 copying galaxy/datatypes/display_applications/configs/qiime/qiime2/q2view.xml -> build/lib/galaxy/datatypes/display_applications/configs/qiime/qiime2 2024-06-28T12:27:53,716 creating build/lib/galaxy/datatypes/display_applications/configs/rviewer 2024-06-28T12:27:53,716 copying galaxy/datatypes/display_applications/configs/rviewer/bed.xml -> build/lib/galaxy/datatypes/display_applications/configs/rviewer 2024-06-28T12:27:53,717 copying galaxy/datatypes/display_applications/configs/rviewer/vcf.xml -> build/lib/galaxy/datatypes/display_applications/configs/rviewer 2024-06-28T12:27:53,718 creating build/lib/galaxy/datatypes/display_applications/configs/ucsc 2024-06-28T12:27:53,718 copying galaxy/datatypes/display_applications/configs/ucsc/bam.xml -> build/lib/galaxy/datatypes/display_applications/configs/ucsc 2024-06-28T12:27:53,719 copying galaxy/datatypes/display_applications/configs/ucsc/bigbed.xml -> build/lib/galaxy/datatypes/display_applications/configs/ucsc 2024-06-28T12:27:53,719 copying galaxy/datatypes/display_applications/configs/ucsc/bigwig.xml -> build/lib/galaxy/datatypes/display_applications/configs/ucsc 2024-06-28T12:27:53,720 copying galaxy/datatypes/display_applications/configs/ucsc/interval_as_bed.xml -> build/lib/galaxy/datatypes/display_applications/configs/ucsc 2024-06-28T12:27:53,720 copying galaxy/datatypes/display_applications/configs/ucsc/maf_customtrack.xml -> build/lib/galaxy/datatypes/display_applications/configs/ucsc 2024-06-28T12:27:53,721 copying galaxy/datatypes/display_applications/configs/ucsc/trackhub.xml -> build/lib/galaxy/datatypes/display_applications/configs/ucsc 2024-06-28T12:27:53,721 copying galaxy/datatypes/display_applications/configs/ucsc/vcf.xml -> build/lib/galaxy/datatypes/display_applications/configs/ucsc 2024-06-28T12:27:53,722 creating build/lib/galaxy/datatypes/display_applications/xsd 2024-06-28T12:27:53,722 copying galaxy/datatypes/display_applications/xsd/geda.xsd -> build/lib/galaxy/datatypes/display_applications/xsd 2024-06-28T12:27:53,723 installing to build/bdist.linux-armv7l/wheel 2024-06-28T12:27:53,723 running install 2024-06-28T12:27:53,737 running install_lib 2024-06-28T12:27:53,743 creating build/bdist.linux-armv7l 2024-06-28T12:27:53,743 creating build/bdist.linux-armv7l/wheel 2024-06-28T12:27:53,745 creating build/bdist.linux-armv7l/wheel/galaxy 2024-06-28T12:27:53,747 creating build/bdist.linux-armv7l/wheel/galaxy/model 2024-06-28T12:27:53,748 copying build/lib/galaxy/model/database_object_names.py -> build/bdist.linux-armv7l/wheel/galaxy/model 2024-06-28T12:27:53,750 copying build/lib/galaxy/model/database_heartbeat.py -> build/bdist.linux-armv7l/wheel/galaxy/model 2024-06-28T12:27:53,753 creating build/bdist.linux-armv7l/wheel/galaxy/model/store 2024-06-28T12:27:53,753 copying build/lib/galaxy/model/store/load_objects.py -> build/bdist.linux-armv7l/wheel/galaxy/model/store 2024-06-28T12:27:53,756 copying build/lib/galaxy/model/store/_bco_convert_utils.py -> build/bdist.linux-armv7l/wheel/galaxy/model/store 2024-06-28T12:27:53,758 copying build/lib/galaxy/model/store/discover.py -> build/bdist.linux-armv7l/wheel/galaxy/model/store 2024-06-28T12:27:53,762 copying build/lib/galaxy/model/store/build_objects.py -> build/bdist.linux-armv7l/wheel/galaxy/model/store 2024-06-28T12:27:53,764 copying build/lib/galaxy/model/store/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/model/store 2024-06-28T12:27:53,769 copying build/lib/galaxy/model/store/ro_crate_utils.py -> build/bdist.linux-armv7l/wheel/galaxy/model/store 2024-06-28T12:27:53,771 copying build/lib/galaxy/model/item_attrs.py -> build/bdist.linux-armv7l/wheel/galaxy/model 2024-06-28T12:27:53,774 copying build/lib/galaxy/model/base.py -> build/bdist.linux-armv7l/wheel/galaxy/model 2024-06-28T12:27:53,776 copying build/lib/galaxy/model/index_filter_util.py -> build/bdist.linux-armv7l/wheel/galaxy/model 2024-06-28T12:27:53,779 creating build/bdist.linux-armv7l/wheel/galaxy/model/migrations 2024-06-28T12:27:53,779 copying build/lib/galaxy/model/migrations/util.py -> build/bdist.linux-armv7l/wheel/galaxy/model/migrations 2024-06-28T12:27:53,783 copying build/lib/galaxy/model/migrations/alembic.ini -> build/bdist.linux-armv7l/wheel/galaxy/model/migrations 2024-06-28T12:27:53,784 copying build/lib/galaxy/model/migrations/exceptions.py -> build/bdist.linux-armv7l/wheel/galaxy/model/migrations 2024-06-28T12:27:53,786 copying build/lib/galaxy/model/migrations/README.md -> build/bdist.linux-armv7l/wheel/galaxy/model/migrations 2024-06-28T12:27:53,788 copying build/lib/galaxy/model/migrations/scripts.py -> build/bdist.linux-armv7l/wheel/galaxy/model/migrations 2024-06-28T12:27:53,791 copying build/lib/galaxy/model/migrations/base.py -> build/bdist.linux-armv7l/wheel/galaxy/model/migrations 2024-06-28T12:27:53,794 copying build/lib/galaxy/model/migrations/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/model/migrations 2024-06-28T12:27:53,796 creating build/bdist.linux-armv7l/wheel/galaxy/model/migrations/alembic 2024-06-28T12:27:53,798 creating build/bdist.linux-armv7l/wheel/galaxy/model/migrations/alembic/versions_gxy 2024-06-28T12:27:53,799 copying build/lib/galaxy/model/migrations/alembic/versions_gxy/6a67bf27e6a6_deferred_data_tables.py -> build/bdist.linux-armv7l/wheel/galaxy/model/migrations/alembic/versions_gxy 2024-06-28T12:27:53,801 copying build/lib/galaxy/model/migrations/alembic/versions_gxy/8a19186a6ee7_add_columns_to_interactivetool_entry_point.py -> build/bdist.linux-armv7l/wheel/galaxy/model/migrations/alembic/versions_gxy 2024-06-28T12:27:53,803 copying build/lib/galaxy/model/migrations/alembic/versions_gxy/3a2914d703ca_add_index_wf_r_s_s__workflow_invocation_.py -> build/bdist.linux-armv7l/wheel/galaxy/model/migrations/alembic/versions_gxy 2024-06-28T12:27:53,805 copying build/lib/galaxy/model/migrations/alembic/versions_gxy/ddbdbc40bdc1_add_workflow_comment_table.py -> build/bdist.linux-armv7l/wheel/galaxy/model/migrations/alembic/versions_gxy 2024-06-28T12:27:53,807 copying build/lib/galaxy/model/migrations/alembic/versions_gxy/3356bc2ecfc4_drop_view.py -> build/bdist.linux-armv7l/wheel/galaxy/model/migrations/alembic/versions_gxy 2024-06-28T12:27:53,809 copying build/lib/galaxy/model/migrations/alembic/versions_gxy/460d0ecd1dd8_.py -> build/bdist.linux-armv7l/wheel/galaxy/model/migrations/alembic/versions_gxy 2024-06-28T12:27:53,811 copying build/lib/galaxy/model/migrations/alembic/versions_gxy/c39f1de47a04_add_skipped_state_to_collection_job_.py -> build/bdist.linux-armv7l/wheel/galaxy/model/migrations/alembic/versions_gxy 2024-06-28T12:27:53,814 copying build/lib/galaxy/model/migrations/alembic/versions_gxy/55f02fd8ab6c_add_index_on_hda_extension.py -> build/bdist.linux-armv7l/wheel/galaxy/model/migrations/alembic/versions_gxy 2024-06-28T12:27:53,815 copying build/lib/galaxy/model/migrations/alembic/versions_gxy/987ce9839ecb_create_celery_user_rate_limit_table.py -> build/bdist.linux-armv7l/wheel/galaxy/model/migrations/alembic/versions_gxy 2024-06-28T12:27:53,817 copying build/lib/galaxy/model/migrations/alembic/versions_gxy/9540a051226e_preferred_object_store_ids.py -> build/bdist.linux-armv7l/wheel/galaxy/model/migrations/alembic/versions_gxy 2024-06-28T12:27:53,819 copying build/lib/galaxy/model/migrations/alembic/versions_gxy/e0561d5fc8c7_add_archived_columns_to_history.py -> build/bdist.linux-armv7l/wheel/galaxy/model/migrations/alembic/versions_gxy 2024-06-28T12:27:53,821 copying build/lib/galaxy/model/migrations/alembic/versions_gxy/518c8438a91b_add_when_expression_column.py -> build/bdist.linux-armv7l/wheel/galaxy/model/migrations/alembic/versions_gxy 2024-06-28T12:27:53,823 copying build/lib/galaxy/model/migrations/alembic/versions_gxy/e0e3bb173ee6_add_column_deleted_to_api_keys.py -> build/bdist.linux-armv7l/wheel/galaxy/model/migrations/alembic/versions_gxy 2024-06-28T12:27:53,824 copying build/lib/galaxy/model/migrations/alembic/versions_gxy/3100452fa030_add_workflow_invocation_message_table.py -> build/bdist.linux-armv7l/wheel/galaxy/model/migrations/alembic/versions_gxy 2024-06-28T12:27:53,827 copying build/lib/galaxy/model/migrations/alembic/versions_gxy/b855b714e8b8_make_api_keys_deleted_non_nullable.py -> build/bdist.linux-armv7l/wheel/galaxy/model/migrations/alembic/versions_gxy 2024-06-28T12:27:53,828 copying build/lib/galaxy/model/migrations/alembic/versions_gxy/e7b6dcb09efd_create_gxy_branch.py -> build/bdist.linux-armv7l/wheel/galaxy/model/migrations/alembic/versions_gxy 2024-06-28T12:27:53,830 copying build/lib/galaxy/model/migrations/alembic/versions_gxy/e93c5d0b47a9_alter_column_external_user_id.py -> build/bdist.linux-armv7l/wheel/galaxy/model/migrations/alembic/versions_gxy 2024-06-28T12:27:53,832 copying build/lib/galaxy/model/migrations/alembic/versions_gxy/d0583094c8cd_add_quota_source_labels.py -> build/bdist.linux-armv7l/wheel/galaxy/model/migrations/alembic/versions_gxy 2024-06-28T12:27:53,834 copying build/lib/galaxy/model/migrations/alembic/versions_gxy/2d749563e1fe_add_notification_system_tables.py -> build/bdist.linux-armv7l/wheel/galaxy/model/migrations/alembic/versions_gxy 2024-06-28T12:27:53,836 copying build/lib/galaxy/model/migrations/alembic/versions_gxy/92fb564c7095_.py -> build/bdist.linux-armv7l/wheel/galaxy/model/migrations/alembic/versions_gxy 2024-06-28T12:27:53,838 copying build/lib/galaxy/model/migrations/alembic/versions_gxy/186d4835587b_drop_job_state_history_update_time_.py -> build/bdist.linux-armv7l/wheel/galaxy/model/migrations/alembic/versions_gxy 2024-06-28T12:27:53,839 copying build/lib/galaxy/model/migrations/alembic/versions_gxy/2dc3386d091f_add_indexes_for_workflow_comment_.py -> build/bdist.linux-armv7l/wheel/galaxy/model/migrations/alembic/versions_gxy 2024-06-28T12:27:53,841 copying build/lib/galaxy/model/migrations/alembic/versions_gxy/caa7742f7bca_add_index_wf_r_i_p__workflow_invocation_.py -> build/bdist.linux-armv7l/wheel/galaxy/model/migrations/alembic/versions_gxy 2024-06-28T12:27:53,843 copying build/lib/galaxy/model/migrations/alembic/versions_gxy/59e024ceaca1_add_export_association_table.py -> build/bdist.linux-armv7l/wheel/galaxy/model/migrations/alembic/versions_gxy 2024-06-28T12:27:53,845 copying build/lib/galaxy/model/migrations/alembic/versions_gxy/b182f655505f_add_workflow_source_metadata_column.py -> build/bdist.linux-armv7l/wheel/galaxy/model/migrations/alembic/versions_gxy 2024-06-28T12:27:53,847 creating build/bdist.linux-armv7l/wheel/galaxy/model/migrations/alembic/versions_tsi 2024-06-28T12:27:53,848 copying build/lib/galaxy/model/migrations/alembic/versions_tsi/d4a650f47a3c_create_tsi_branch.py -> build/bdist.linux-armv7l/wheel/galaxy/model/migrations/alembic/versions_tsi 2024-06-28T12:27:53,851 copying build/lib/galaxy/model/migrations/alembic/script.py.mako -> build/bdist.linux-armv7l/wheel/galaxy/model/migrations/alembic 2024-06-28T12:27:53,853 copying build/lib/galaxy/model/migrations/alembic/env.py -> build/bdist.linux-armv7l/wheel/galaxy/model/migrations/alembic 2024-06-28T12:27:53,855 copying build/lib/galaxy/model/migrations/dbscript.py -> build/bdist.linux-armv7l/wheel/galaxy/model/migrations 2024-06-28T12:27:53,857 copying build/lib/galaxy/model/metadata.py -> build/bdist.linux-armv7l/wheel/galaxy/model 2024-06-28T12:27:53,860 copying build/lib/galaxy/model/custom_types.py -> build/bdist.linux-armv7l/wheel/galaxy/model 2024-06-28T12:27:53,863 creating build/bdist.linux-armv7l/wheel/galaxy/model/tool_shed_install 2024-06-28T12:27:53,864 copying build/lib/galaxy/model/tool_shed_install/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/model/tool_shed_install 2024-06-28T12:27:53,867 copying build/lib/galaxy/model/tool_shed_install/mapping.py -> build/bdist.linux-armv7l/wheel/galaxy/model/tool_shed_install 2024-06-28T12:27:53,869 copying build/lib/galaxy/model/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/model 2024-06-28T12:27:53,879 creating build/bdist.linux-armv7l/wheel/galaxy/model/unittest_utils 2024-06-28T12:27:53,880 copying build/lib/galaxy/model/unittest_utils/model_testing_utils.py -> build/bdist.linux-armv7l/wheel/galaxy/model/unittest_utils 2024-06-28T12:27:53,883 copying build/lib/galaxy/model/unittest_utils/gxy_model_fixtures.py -> build/bdist.linux-armv7l/wheel/galaxy/model/unittest_utils 2024-06-28T12:27:53,886 copying build/lib/galaxy/model/unittest_utils/beaker_testing_utils.py -> build/bdist.linux-armv7l/wheel/galaxy/model/unittest_utils 2024-06-28T12:27:53,888 copying build/lib/galaxy/model/unittest_utils/store_fixtures.py -> build/bdist.linux-armv7l/wheel/galaxy/model/unittest_utils 2024-06-28T12:27:53,890 copying build/lib/galaxy/model/unittest_utils/tsi_model_fixtures.py -> build/bdist.linux-armv7l/wheel/galaxy/model/unittest_utils 2024-06-28T12:27:53,892 copying build/lib/galaxy/model/unittest_utils/migration_scripts_testing_utils.py -> build/bdist.linux-armv7l/wheel/galaxy/model/unittest_utils 2024-06-28T12:27:53,894 copying build/lib/galaxy/model/unittest_utils/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/model/unittest_utils 2024-06-28T12:27:53,896 copying build/lib/galaxy/model/unittest_utils/data_app.py -> build/bdist.linux-armv7l/wheel/galaxy/model/unittest_utils 2024-06-28T12:27:53,898 copying build/lib/galaxy/model/unittest_utils/mapping_testing_utils.py -> build/bdist.linux-armv7l/wheel/galaxy/model/unittest_utils 2024-06-28T12:27:53,900 creating build/bdist.linux-armv7l/wheel/galaxy/model/orm 2024-06-28T12:27:53,902 copying build/lib/galaxy/model/orm/util.py -> build/bdist.linux-armv7l/wheel/galaxy/model/orm 2024-06-28T12:27:53,903 copying build/lib/galaxy/model/orm/scripts.py -> build/bdist.linux-armv7l/wheel/galaxy/model/orm 2024-06-28T12:27:53,906 copying build/lib/galaxy/model/orm/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/model/orm 2024-06-28T12:27:53,907 copying build/lib/galaxy/model/orm/engine_factory.py -> build/bdist.linux-armv7l/wheel/galaxy/model/orm 2024-06-28T12:27:53,910 copying build/lib/galaxy/model/orm/now.py -> build/bdist.linux-armv7l/wheel/galaxy/model/orm 2024-06-28T12:27:53,911 copying build/lib/galaxy/model/none_like.py -> build/bdist.linux-armv7l/wheel/galaxy/model 2024-06-28T12:27:53,914 creating build/bdist.linux-armv7l/wheel/galaxy/model/dataset_collections 2024-06-28T12:27:53,915 copying build/lib/galaxy/model/dataset_collections/type_description.py -> build/bdist.linux-armv7l/wheel/galaxy/model/dataset_collections 2024-06-28T12:27:53,917 copying build/lib/galaxy/model/dataset_collections/structure.py -> build/bdist.linux-armv7l/wheel/galaxy/model/dataset_collections 2024-06-28T12:27:53,920 creating build/bdist.linux-armv7l/wheel/galaxy/model/dataset_collections/types 2024-06-28T12:27:53,921 copying build/lib/galaxy/model/dataset_collections/types/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/model/dataset_collections/types 2024-06-28T12:27:53,923 copying build/lib/galaxy/model/dataset_collections/types/list.py -> build/bdist.linux-armv7l/wheel/galaxy/model/dataset_collections/types 2024-06-28T12:27:53,925 copying build/lib/galaxy/model/dataset_collections/types/paired.py -> build/bdist.linux-armv7l/wheel/galaxy/model/dataset_collections/types 2024-06-28T12:27:53,927 copying build/lib/galaxy/model/dataset_collections/matching.py -> build/bdist.linux-armv7l/wheel/galaxy/model/dataset_collections 2024-06-28T12:27:53,929 copying build/lib/galaxy/model/dataset_collections/builder.py -> build/bdist.linux-armv7l/wheel/galaxy/model/dataset_collections 2024-06-28T12:27:53,931 copying build/lib/galaxy/model/dataset_collections/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/model/dataset_collections 2024-06-28T12:27:53,933 copying build/lib/galaxy/model/dataset_collections/registry.py -> build/bdist.linux-armv7l/wheel/galaxy/model/dataset_collections 2024-06-28T12:27:53,934 copying build/lib/galaxy/model/dataset_collections/subcollections.py -> build/bdist.linux-armv7l/wheel/galaxy/model/dataset_collections 2024-06-28T12:27:53,936 copying build/lib/galaxy/model/mapping.py -> build/bdist.linux-armv7l/wheel/galaxy/model 2024-06-28T12:27:53,938 copying build/lib/galaxy/model/security.py -> build/bdist.linux-armv7l/wheel/galaxy/model 2024-06-28T12:27:53,942 copying build/lib/galaxy/model/database_utils.py -> build/bdist.linux-armv7l/wheel/galaxy/model 2024-06-28T12:27:53,944 copying build/lib/galaxy/model/deferred.py -> build/bdist.linux-armv7l/wheel/galaxy/model 2024-06-28T12:27:53,947 creating build/bdist.linux-armv7l/wheel/galaxy/model/triggers 2024-06-28T12:27:53,948 copying build/lib/galaxy/model/triggers/update_audit_table.py -> build/bdist.linux-armv7l/wheel/galaxy/model/triggers 2024-06-28T12:27:53,951 copying build/lib/galaxy/model/triggers/utils.py -> build/bdist.linux-armv7l/wheel/galaxy/model/triggers 2024-06-28T12:27:53,953 copying build/lib/galaxy/model/triggers/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/model/triggers 2024-06-28T12:27:53,954 copying build/lib/galaxy/model/triggers/history_update_time_field.py -> build/bdist.linux-armv7l/wheel/galaxy/model/triggers 2024-06-28T12:27:53,956 copying build/lib/galaxy/model/tags.py -> build/bdist.linux-armv7l/wheel/galaxy/model 2024-06-28T12:27:53,959 copying build/lib/galaxy/model/scoped_session.py -> build/bdist.linux-armv7l/wheel/galaxy/model 2024-06-28T12:27:53,961 creating build/bdist.linux-armv7l/wheel/galaxy/datatypes 2024-06-28T12:27:53,962 copying build/lib/galaxy/datatypes/data.py -> build/bdist.linux-armv7l/wheel/galaxy/datatypes 2024-06-28T12:27:53,965 copying build/lib/galaxy/datatypes/xml.py -> build/bdist.linux-armv7l/wheel/galaxy/datatypes 2024-06-28T12:27:53,967 copying build/lib/galaxy/datatypes/speech.py -> build/bdist.linux-armv7l/wheel/galaxy/datatypes 2024-06-28T12:27:53,969 copying build/lib/galaxy/datatypes/annotation.py -> build/bdist.linux-armv7l/wheel/galaxy/datatypes 2024-06-28T12:27:53,971 copying build/lib/galaxy/datatypes/assembly.py -> build/bdist.linux-armv7l/wheel/galaxy/datatypes 2024-06-28T12:27:53,973 creating build/bdist.linux-armv7l/wheel/galaxy/datatypes/dataproviders 2024-06-28T12:27:53,974 copying build/lib/galaxy/datatypes/dataproviders/exceptions.py -> build/bdist.linux-armv7l/wheel/galaxy/datatypes/dataproviders 2024-06-28T12:27:53,976 copying build/lib/galaxy/datatypes/dataproviders/chunk.py -> build/bdist.linux-armv7l/wheel/galaxy/datatypes/dataproviders 2024-06-28T12:27:53,978 copying build/lib/galaxy/datatypes/dataproviders/external.py -> build/bdist.linux-armv7l/wheel/galaxy/datatypes/dataproviders 2024-06-28T12:27:53,980 copying build/lib/galaxy/datatypes/dataproviders/base.py -> build/bdist.linux-armv7l/wheel/galaxy/datatypes/dataproviders 2024-06-28T12:27:53,982 copying build/lib/galaxy/datatypes/dataproviders/decorators.py -> build/bdist.linux-armv7l/wheel/galaxy/datatypes/dataproviders 2024-06-28T12:27:53,984 copying build/lib/galaxy/datatypes/dataproviders/hierarchy.py -> build/bdist.linux-armv7l/wheel/galaxy/datatypes/dataproviders 2024-06-28T12:27:53,986 copying build/lib/galaxy/datatypes/dataproviders/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/datatypes/dataproviders 2024-06-28T12:27:53,988 copying build/lib/galaxy/datatypes/dataproviders/line.py -> build/bdist.linux-armv7l/wheel/galaxy/datatypes/dataproviders 2024-06-28T12:27:53,990 copying build/lib/galaxy/datatypes/dataproviders/column.py -> build/bdist.linux-armv7l/wheel/galaxy/datatypes/dataproviders 2024-06-28T12:27:53,992 copying build/lib/galaxy/datatypes/dataproviders/dataset.py -> build/bdist.linux-armv7l/wheel/galaxy/datatypes/dataproviders 2024-06-28T12:27:53,995 copying build/lib/galaxy/datatypes/spaln.py -> build/bdist.linux-armv7l/wheel/galaxy/datatypes 2024-06-28T12:27:53,997 copying build/lib/galaxy/datatypes/media.py -> build/bdist.linux-armv7l/wheel/galaxy/datatypes 2024-06-28T12:27:53,999 copying build/lib/galaxy/datatypes/larch.py -> build/bdist.linux-armv7l/wheel/galaxy/datatypes 2024-06-28T12:27:54,001 copying build/lib/galaxy/datatypes/ngsindex.py -> build/bdist.linux-armv7l/wheel/galaxy/datatypes 2024-06-28T12:27:54,003 copying build/lib/galaxy/datatypes/chain.py -> build/bdist.linux-armv7l/wheel/galaxy/datatypes 2024-06-28T12:27:54,005 copying build/lib/galaxy/datatypes/protocols.py -> build/bdist.linux-armv7l/wheel/galaxy/datatypes 2024-06-28T12:27:54,007 copying build/lib/galaxy/datatypes/metacyto.py -> build/bdist.linux-armv7l/wheel/galaxy/datatypes 2024-06-28T12:27:54,009 copying build/lib/galaxy/datatypes/graph.py -> build/bdist.linux-armv7l/wheel/galaxy/datatypes 2024-06-28T12:27:54,011 copying build/lib/galaxy/datatypes/tabular.py -> build/bdist.linux-armv7l/wheel/galaxy/datatypes 2024-06-28T12:27:54,014 copying build/lib/galaxy/datatypes/isa.py -> build/bdist.linux-armv7l/wheel/galaxy/datatypes 2024-06-28T12:27:54,017 copying build/lib/galaxy/datatypes/metadata.py -> build/bdist.linux-armv7l/wheel/galaxy/datatypes 2024-06-28T12:27:54,019 copying build/lib/galaxy/datatypes/anvio.py -> build/bdist.linux-armv7l/wheel/galaxy/datatypes 2024-06-28T12:27:54,021 copying build/lib/galaxy/datatypes/sequence.py -> build/bdist.linux-armv7l/wheel/galaxy/datatypes 2024-06-28T12:27:54,024 copying build/lib/galaxy/datatypes/qualityscore.py -> build/bdist.linux-armv7l/wheel/galaxy/datatypes 2024-06-28T12:27:54,026 copying build/lib/galaxy/datatypes/goldenpath.py -> build/bdist.linux-armv7l/wheel/galaxy/datatypes 2024-06-28T12:27:54,028 copying build/lib/galaxy/datatypes/neo4j.py -> build/bdist.linux-armv7l/wheel/galaxy/datatypes 2024-06-28T12:27:54,031 copying build/lib/galaxy/datatypes/proteomics.py -> build/bdist.linux-armv7l/wheel/galaxy/datatypes 2024-06-28T12:27:54,033 copying build/lib/galaxy/datatypes/upload_util.py -> build/bdist.linux-armv7l/wheel/galaxy/datatypes 2024-06-28T12:27:54,035 copying build/lib/galaxy/datatypes/flow.py -> build/bdist.linux-armv7l/wheel/galaxy/datatypes 2024-06-28T12:27:54,037 copying build/lib/galaxy/datatypes/gis.py -> build/bdist.linux-armv7l/wheel/galaxy/datatypes 2024-06-28T12:27:54,039 copying build/lib/galaxy/datatypes/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/datatypes 2024-06-28T12:27:54,040 copying build/lib/galaxy/datatypes/triples.py -> build/bdist.linux-armv7l/wheel/galaxy/datatypes 2024-06-28T12:27:54,042 copying build/lib/galaxy/datatypes/plant_tribes.py -> build/bdist.linux-armv7l/wheel/galaxy/datatypes 2024-06-28T12:27:54,044 copying build/lib/galaxy/datatypes/blast.py -> build/bdist.linux-armv7l/wheel/galaxy/datatypes 2024-06-28T12:27:54,047 copying build/lib/galaxy/datatypes/binary.py -> build/bdist.linux-armv7l/wheel/galaxy/datatypes 2024-06-28T12:27:54,051 copying build/lib/galaxy/datatypes/text.py -> build/bdist.linux-armv7l/wheel/galaxy/datatypes 2024-06-28T12:27:54,054 copying build/lib/galaxy/datatypes/registry.py -> build/bdist.linux-armv7l/wheel/galaxy/datatypes 2024-06-28T12:27:54,058 copying build/lib/galaxy/datatypes/phylip.py -> build/bdist.linux-armv7l/wheel/galaxy/datatypes 2024-06-28T12:27:54,062 creating build/bdist.linux-armv7l/wheel/galaxy/datatypes/converters 2024-06-28T12:27:54,063 copying build/lib/galaxy/datatypes/converters/fasta_to_len.py -> build/bdist.linux-armv7l/wheel/galaxy/datatypes/converters 2024-06-28T12:27:54,065 copying build/lib/galaxy/datatypes/converters/biom.xml -> build/bdist.linux-armv7l/wheel/galaxy/datatypes/converters 2024-06-28T12:27:54,067 copying build/lib/galaxy/datatypes/converters/lped_to_fped_converter.xml -> build/bdist.linux-armv7l/wheel/galaxy/datatypes/converters 2024-06-28T12:27:54,068 copying build/lib/galaxy/datatypes/converters/to_qname_sorted_bam.xml -> build/bdist.linux-armv7l/wheel/galaxy/datatypes/converters 2024-06-28T12:27:54,070 copying build/lib/galaxy/datatypes/converters/inchi_to_mol_converter.xml -> build/bdist.linux-armv7l/wheel/galaxy/datatypes/converters 2024-06-28T12:27:54,072 copying build/lib/galaxy/datatypes/converters/maf_to_fasta_converter.py -> build/bdist.linux-armv7l/wheel/galaxy/datatypes/converters 2024-06-28T12:27:54,074 copying build/lib/galaxy/datatypes/converters/bed_to_gff_converter.py -> build/bdist.linux-armv7l/wheel/galaxy/datatypes/converters 2024-06-28T12:27:54,075 copying build/lib/galaxy/datatypes/converters/gff_to_interval_index_converter.xml -> build/bdist.linux-armv7l/wheel/galaxy/datatypes/converters 2024-06-28T12:27:54,077 copying build/lib/galaxy/datatypes/converters/sam_to_unsorted_bam.xml -> build/bdist.linux-armv7l/wheel/galaxy/datatypes/converters 2024-06-28T12:27:54,079 copying build/lib/galaxy/datatypes/converters/vcf_to_vcf_bgzip_converter.xml -> build/bdist.linux-armv7l/wheel/galaxy/datatypes/converters 2024-06-28T12:27:54,080 copying build/lib/galaxy/datatypes/converters/csv_to_tabular.xml -> build/bdist.linux-armv7l/wheel/galaxy/datatypes/converters 2024-06-28T12:27:54,082 copying build/lib/galaxy/datatypes/converters/gff_to_interval_index_converter.py -> build/bdist.linux-armv7l/wheel/galaxy/datatypes/converters 2024-06-28T12:27:54,084 copying build/lib/galaxy/datatypes/converters/cml_to_smi_converter.xml -> build/bdist.linux-armv7l/wheel/galaxy/datatypes/converters 2024-06-28T12:27:54,086 copying build/lib/galaxy/datatypes/converters/fastq_to_fqtoc.py -> build/bdist.linux-armv7l/wheel/galaxy/datatypes/converters 2024-06-28T12:27:54,088 copying build/lib/galaxy/datatypes/converters/to_coordinate_sorted_bam.xml -> build/bdist.linux-armv7l/wheel/galaxy/datatypes/converters 2024-06-28T12:27:54,089 copying build/lib/galaxy/datatypes/converters/interval_to_bedstrict_converter.xml -> build/bdist.linux-armv7l/wheel/galaxy/datatypes/converters 2024-06-28T12:27:54,091 copying build/lib/galaxy/datatypes/converters/tabular_to_dbnsfp.xml -> build/bdist.linux-armv7l/wheel/galaxy/datatypes/converters 2024-06-28T12:27:54,093 copying build/lib/galaxy/datatypes/converters/bam_to_bai.xml -> build/bdist.linux-armv7l/wheel/galaxy/datatypes/converters 2024-06-28T12:27:54,095 copying build/lib/galaxy/datatypes/converters/bed_to_fli_converter.xml -> build/bdist.linux-armv7l/wheel/galaxy/datatypes/converters 2024-06-28T12:27:54,096 copying build/lib/galaxy/datatypes/converters/picard_interval_list_to_bed6_converter.py -> build/bdist.linux-armv7l/wheel/galaxy/datatypes/converters 2024-06-28T12:27:54,098 copying build/lib/galaxy/datatypes/converters/ref_to_seq_taxonomy_converter.py -> build/bdist.linux-armv7l/wheel/galaxy/datatypes/converters 2024-06-28T12:27:54,100 copying build/lib/galaxy/datatypes/converters/parquet_to_csv_converter.py -> build/bdist.linux-armv7l/wheel/galaxy/datatypes/converters 2024-06-28T12:27:54,101 copying build/lib/galaxy/datatypes/converters/fastq_to_fqtoc.xml -> build/bdist.linux-armv7l/wheel/galaxy/datatypes/converters 2024-06-28T12:27:54,103 copying build/lib/galaxy/datatypes/converters/pbed_ldreduced_converter.py -> build/bdist.linux-armv7l/wheel/galaxy/datatypes/converters 2024-06-28T12:27:54,105 copying build/lib/galaxy/datatypes/converters/fasta_to_tabular_converter.py -> build/bdist.linux-armv7l/wheel/galaxy/datatypes/converters 2024-06-28T12:27:54,107 copying build/lib/galaxy/datatypes/converters/lped_to_pbed_converter.py -> build/bdist.linux-armv7l/wheel/galaxy/datatypes/converters 2024-06-28T12:27:54,109 copying build/lib/galaxy/datatypes/converters/neostorezip_to_neostore_converter.xml -> build/bdist.linux-armv7l/wheel/galaxy/datatypes/converters 2024-06-28T12:27:54,111 copying build/lib/galaxy/datatypes/converters/pbed_to_lped_converter.xml -> build/bdist.linux-armv7l/wheel/galaxy/datatypes/converters 2024-06-28T12:27:54,112 copying build/lib/galaxy/datatypes/converters/parquet_to_csv_converter.xml -> build/bdist.linux-armv7l/wheel/galaxy/datatypes/converters 2024-06-28T12:27:54,114 copying build/lib/galaxy/datatypes/converters/interval_to_bed12_converter.xml -> build/bdist.linux-armv7l/wheel/galaxy/datatypes/converters 2024-06-28T12:27:54,116 copying build/lib/galaxy/datatypes/converters/interval_to_bed6_converter.xml -> build/bdist.linux-armv7l/wheel/galaxy/datatypes/converters 2024-06-28T12:27:54,117 copying build/lib/galaxy/datatypes/converters/maf_to_interval_converter.py -> build/bdist.linux-armv7l/wheel/galaxy/datatypes/converters 2024-06-28T12:27:54,119 copying build/lib/galaxy/datatypes/converters/fastqsolexa_to_qual_converter.xml -> build/bdist.linux-armv7l/wheel/galaxy/datatypes/converters 2024-06-28T12:27:54,121 copying build/lib/galaxy/datatypes/converters/smi_to_mol_converter.xml -> build/bdist.linux-armv7l/wheel/galaxy/datatypes/converters 2024-06-28T12:27:54,123 copying build/lib/galaxy/datatypes/converters/lped_to_pbed_converter.xml -> build/bdist.linux-armv7l/wheel/galaxy/datatypes/converters 2024-06-28T12:27:54,124 copying build/lib/galaxy/datatypes/converters/bed_to_gff_converter.xml -> build/bdist.linux-armv7l/wheel/galaxy/datatypes/converters 2024-06-28T12:27:54,126 copying build/lib/galaxy/datatypes/converters/uncompressed_to_gz.xml -> build/bdist.linux-armv7l/wheel/galaxy/datatypes/converters 2024-06-28T12:27:54,128 copying build/lib/galaxy/datatypes/converters/interval_to_tabix_converter.xml -> build/bdist.linux-armv7l/wheel/galaxy/datatypes/converters 2024-06-28T12:27:54,130 copying build/lib/galaxy/datatypes/converters/tar_to_directory.xml -> build/bdist.linux-armv7l/wheel/galaxy/datatypes/converters 2024-06-28T12:27:54,132 copying build/lib/galaxy/datatypes/converters/fastqsolexa_to_qual_converter.py -> build/bdist.linux-armv7l/wheel/galaxy/datatypes/converters 2024-06-28T12:27:54,133 copying build/lib/galaxy/datatypes/converters/interval_to_interval_index_converter.py -> build/bdist.linux-armv7l/wheel/galaxy/datatypes/converters 2024-06-28T12:27:54,135 copying build/lib/galaxy/datatypes/converters/interval_to_bed_converter.xml -> build/bdist.linux-armv7l/wheel/galaxy/datatypes/converters 2024-06-28T12:27:54,137 copying build/lib/galaxy/datatypes/converters/gz_to_uncompressed.xml -> build/bdist.linux-armv7l/wheel/galaxy/datatypes/converters 2024-06-28T12:27:54,139 copying build/lib/galaxy/datatypes/converters/mdconvert.xml -> build/bdist.linux-armv7l/wheel/galaxy/datatypes/converters 2024-06-28T12:27:54,140 copying build/lib/galaxy/datatypes/converters/vcf_to_interval_index_converter.xml -> build/bdist.linux-armv7l/wheel/galaxy/datatypes/converters 2024-06-28T12:27:54,142 copying build/lib/galaxy/datatypes/converters/bz2_to_uncompressed.xml -> build/bdist.linux-armv7l/wheel/galaxy/datatypes/converters 2024-06-28T12:27:54,144 copying build/lib/galaxy/datatypes/converters/maf_to_interval_converter.xml -> build/bdist.linux-armv7l/wheel/galaxy/datatypes/converters 2024-06-28T12:27:54,146 copying build/lib/galaxy/datatypes/converters/len_to_linecount.xml -> build/bdist.linux-armv7l/wheel/galaxy/datatypes/converters 2024-06-28T12:27:54,148 copying build/lib/galaxy/datatypes/converters/vcf_bgzip_to_tabix_converter.xml -> build/bdist.linux-armv7l/wheel/galaxy/datatypes/converters 2024-06-28T12:27:54,150 copying build/lib/galaxy/datatypes/converters/fasta_to_bowtie_base_index_converter.xml -> build/bdist.linux-armv7l/wheel/galaxy/datatypes/converters 2024-06-28T12:27:54,152 copying build/lib/galaxy/datatypes/converters/sam_to_bigwig_converter.xml -> build/bdist.linux-armv7l/wheel/galaxy/datatypes/converters 2024-06-28T12:27:54,154 copying build/lib/galaxy/datatypes/converters/bigwig_to_wig_converter.xml -> build/bdist.linux-armv7l/wheel/galaxy/datatypes/converters 2024-06-28T12:27:54,157 copying build/lib/galaxy/datatypes/converters/bed_gff_or_vcf_to_bigwig_converter.xml -> build/bdist.linux-armv7l/wheel/galaxy/datatypes/converters 2024-06-28T12:27:54,159 copying build/lib/galaxy/datatypes/converters/ref_to_seq_taxonomy_converter.xml -> build/bdist.linux-armv7l/wheel/galaxy/datatypes/converters 2024-06-28T12:27:54,161 copying build/lib/galaxy/datatypes/converters/molecules_converter.xml -> build/bdist.linux-armv7l/wheel/galaxy/datatypes/converters 2024-06-28T12:27:54,164 copying build/lib/galaxy/datatypes/converters/bcf_bcf_uncompressed_converter.xml -> build/bdist.linux-armv7l/wheel/galaxy/datatypes/converters 2024-06-28T12:27:54,166 copying build/lib/galaxy/datatypes/converters/fasta_to_fai.xml -> build/bdist.linux-armv7l/wheel/galaxy/datatypes/converters 2024-06-28T12:27:54,168 copying build/lib/galaxy/datatypes/converters/pileup_to_interval_index_converter.xml -> build/bdist.linux-armv7l/wheel/galaxy/datatypes/converters 2024-06-28T12:27:54,170 copying build/lib/galaxy/datatypes/converters/maf_to_fasta_converter.xml -> build/bdist.linux-armv7l/wheel/galaxy/datatypes/converters 2024-06-28T12:27:54,172 copying build/lib/galaxy/datatypes/converters/interval_to_interval_index_converter.xml -> build/bdist.linux-armv7l/wheel/galaxy/datatypes/converters 2024-06-28T12:27:54,174 copying build/lib/galaxy/datatypes/converters/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/datatypes/converters 2024-06-28T12:27:54,176 copying build/lib/galaxy/datatypes/converters/interval_to_fli.py -> build/bdist.linux-armv7l/wheel/galaxy/datatypes/converters 2024-06-28T12:27:54,179 copying build/lib/galaxy/datatypes/converters/wig_to_bigwig_converter.xml -> build/bdist.linux-armv7l/wheel/galaxy/datatypes/converters 2024-06-28T12:27:54,181 copying build/lib/galaxy/datatypes/converters/interval_to_bedstrict_converter.py -> build/bdist.linux-armv7l/wheel/galaxy/datatypes/converters 2024-06-28T12:27:54,184 copying build/lib/galaxy/datatypes/converters/tabular_to_csv.xml -> build/bdist.linux-armv7l/wheel/galaxy/datatypes/converters 2024-06-28T12:27:54,186 copying build/lib/galaxy/datatypes/converters/lped_to_fped_converter.py -> build/bdist.linux-armv7l/wheel/galaxy/datatypes/converters 2024-06-28T12:27:54,188 copying build/lib/galaxy/datatypes/converters/gro_to_pdb.xml -> build/bdist.linux-armv7l/wheel/galaxy/datatypes/converters 2024-06-28T12:27:54,190 copying build/lib/galaxy/datatypes/converters/interval_to_bgzip_converter.xml -> build/bdist.linux-armv7l/wheel/galaxy/datatypes/converters 2024-06-28T12:27:54,192 copying build/lib/galaxy/datatypes/converters/gff_to_fli_converter.xml -> build/bdist.linux-armv7l/wheel/galaxy/datatypes/converters 2024-06-28T12:27:54,194 copying build/lib/galaxy/datatypes/converters/bam_to_bigwig_converter.xml -> build/bdist.linux-armv7l/wheel/galaxy/datatypes/converters 2024-06-28T12:27:54,197 copying build/lib/galaxy/datatypes/converters/interval_to_bigwig_converter.xml -> build/bdist.linux-armv7l/wheel/galaxy/datatypes/converters 2024-06-28T12:27:54,199 copying build/lib/galaxy/datatypes/converters/wiggle_to_simple_converter.py -> build/bdist.linux-armv7l/wheel/galaxy/datatypes/converters 2024-06-28T12:27:54,201 copying build/lib/galaxy/datatypes/converters/wiggle_to_simple_converter.xml -> build/bdist.linux-armv7l/wheel/galaxy/datatypes/converters 2024-06-28T12:27:54,203 copying build/lib/galaxy/datatypes/converters/fastqsolexa_to_fasta_converter.py -> build/bdist.linux-armv7l/wheel/galaxy/datatypes/converters 2024-06-28T12:27:54,205 copying build/lib/galaxy/datatypes/converters/pbed_to_lped_converter.py -> build/bdist.linux-armv7l/wheel/galaxy/datatypes/converters 2024-06-28T12:27:54,207 copying build/lib/galaxy/datatypes/converters/fasta_to_2bit.xml -> build/bdist.linux-armv7l/wheel/galaxy/datatypes/converters 2024-06-28T12:27:54,209 copying build/lib/galaxy/datatypes/converters/interval_to_bed_converter.py -> build/bdist.linux-armv7l/wheel/galaxy/datatypes/converters 2024-06-28T12:27:54,211 copying build/lib/galaxy/datatypes/converters/mol2_to_mol_converter.xml -> build/bdist.linux-armv7l/wheel/galaxy/datatypes/converters 2024-06-28T12:27:54,213 copying build/lib/galaxy/datatypes/converters/fastqsolexa_to_fasta_converter.xml -> build/bdist.linux-armv7l/wheel/galaxy/datatypes/converters 2024-06-28T12:27:54,215 copying build/lib/galaxy/datatypes/converters/fasta_to_tabular_converter.xml -> build/bdist.linux-armv7l/wheel/galaxy/datatypes/converters 2024-06-28T12:27:54,218 copying build/lib/galaxy/datatypes/converters/pileup_to_interval_index_converter.py -> build/bdist.linux-armv7l/wheel/galaxy/datatypes/converters 2024-06-28T12:27:54,220 copying build/lib/galaxy/datatypes/converters/gff_to_bed_converter.py -> build/bdist.linux-armv7l/wheel/galaxy/datatypes/converters 2024-06-28T12:27:54,222 copying build/lib/galaxy/datatypes/converters/pbed_ldreduced_converter.xml -> build/bdist.linux-armv7l/wheel/galaxy/datatypes/converters 2024-06-28T12:27:54,224 copying build/lib/galaxy/datatypes/converters/gff_to_bed_converter.xml -> build/bdist.linux-armv7l/wheel/galaxy/datatypes/converters 2024-06-28T12:27:54,227 copying build/lib/galaxy/datatypes/converters/picard_interval_list_to_bed6_converter.xml -> build/bdist.linux-armv7l/wheel/galaxy/datatypes/converters 2024-06-28T12:27:54,229 copying build/lib/galaxy/datatypes/converters/fasta_to_len.xml -> build/bdist.linux-armv7l/wheel/galaxy/datatypes/converters 2024-06-28T12:27:54,231 copying build/lib/galaxy/datatypes/converters/bed_to_interval_index_converter.xml -> build/bdist.linux-armv7l/wheel/galaxy/datatypes/converters 2024-06-28T12:27:54,234 copying build/lib/galaxy/datatypes/converters/smi_to_smi_converter.xml -> build/bdist.linux-armv7l/wheel/galaxy/datatypes/converters 2024-06-28T12:27:54,236 copying build/lib/galaxy/datatypes/converters/pdb_to_gro.xml -> build/bdist.linux-armv7l/wheel/galaxy/datatypes/converters 2024-06-28T12:27:54,238 copying build/lib/galaxy/datatypes/converters/vcf_to_interval_index_converter.py -> build/bdist.linux-armv7l/wheel/galaxy/datatypes/converters 2024-06-28T12:27:54,240 copying build/lib/galaxy/datatypes/converters/tabular_csv.py -> build/bdist.linux-armv7l/wheel/galaxy/datatypes/converters 2024-06-28T12:27:54,243 copying build/lib/galaxy/datatypes/converters/cram_to_bam_converter.xml -> build/bdist.linux-armv7l/wheel/galaxy/datatypes/converters 2024-06-28T12:27:54,244 copying build/lib/galaxy/datatypes/converters/fasta_to_bowtie_color_index_converter.xml -> build/bdist.linux-armv7l/wheel/galaxy/datatypes/converters 2024-06-28T12:27:54,246 copying build/lib/galaxy/datatypes/converters/bedgraph_to_bigwig_converter.xml -> build/bdist.linux-armv7l/wheel/galaxy/datatypes/converters 2024-06-28T12:27:54,248 copying build/lib/galaxy/datatypes/coverage.py -> build/bdist.linux-armv7l/wheel/galaxy/datatypes 2024-06-28T12:27:54,249 copying build/lib/galaxy/datatypes/msa.py -> build/bdist.linux-armv7l/wheel/galaxy/datatypes 2024-06-28T12:27:54,252 creating build/bdist.linux-armv7l/wheel/galaxy/datatypes/display_applications 2024-06-28T12:27:54,253 copying build/lib/galaxy/datatypes/display_applications/util.py -> build/bdist.linux-armv7l/wheel/galaxy/datatypes/display_applications 2024-06-28T12:27:54,255 creating build/bdist.linux-armv7l/wheel/galaxy/datatypes/display_applications/xsd 2024-06-28T12:27:54,256 copying build/lib/galaxy/datatypes/display_applications/xsd/geda.xsd -> build/bdist.linux-armv7l/wheel/galaxy/datatypes/display_applications/xsd 2024-06-28T12:27:54,259 creating build/bdist.linux-armv7l/wheel/galaxy/datatypes/display_applications/configs 2024-06-28T12:27:54,261 creating build/bdist.linux-armv7l/wheel/galaxy/datatypes/display_applications/configs/image 2024-06-28T12:27:54,262 copying build/lib/galaxy/datatypes/display_applications/configs/image/avivator.xml -> build/bdist.linux-armv7l/wheel/galaxy/datatypes/display_applications/configs/image 2024-06-28T12:27:54,264 creating build/bdist.linux-armv7l/wheel/galaxy/datatypes/display_applications/configs/minerva 2024-06-28T12:27:54,265 copying build/lib/galaxy/datatypes/display_applications/configs/minerva/tabular.xml -> build/bdist.linux-armv7l/wheel/galaxy/datatypes/display_applications/configs/minerva 2024-06-28T12:27:54,267 creating build/bdist.linux-armv7l/wheel/galaxy/datatypes/display_applications/configs/biom 2024-06-28T12:27:54,268 copying build/lib/galaxy/datatypes/display_applications/configs/biom/biom_simple.xml -> build/bdist.linux-armv7l/wheel/galaxy/datatypes/display_applications/configs/biom 2024-06-28T12:27:54,270 creating build/bdist.linux-armv7l/wheel/galaxy/datatypes/display_applications/configs/igv 2024-06-28T12:27:54,271 copying build/lib/galaxy/datatypes/display_applications/configs/igv/interval_as_bed.xml -> build/bdist.linux-armv7l/wheel/galaxy/datatypes/display_applications/configs/igv 2024-06-28T12:27:54,273 copying build/lib/galaxy/datatypes/display_applications/configs/igv/bam.xml -> build/bdist.linux-armv7l/wheel/galaxy/datatypes/display_applications/configs/igv 2024-06-28T12:27:54,275 copying build/lib/galaxy/datatypes/display_applications/configs/igv/gff.xml -> build/bdist.linux-armv7l/wheel/galaxy/datatypes/display_applications/configs/igv 2024-06-28T12:27:54,278 copying build/lib/galaxy/datatypes/display_applications/configs/igv/bigwig.xml -> build/bdist.linux-armv7l/wheel/galaxy/datatypes/display_applications/configs/igv 2024-06-28T12:27:54,280 copying build/lib/galaxy/datatypes/display_applications/configs/igv/genbank.xml -> build/bdist.linux-armv7l/wheel/galaxy/datatypes/display_applications/configs/igv 2024-06-28T12:27:54,282 copying build/lib/galaxy/datatypes/display_applications/configs/igv/vcf.xml -> build/bdist.linux-armv7l/wheel/galaxy/datatypes/display_applications/configs/igv 2024-06-28T12:27:54,284 copying build/lib/galaxy/datatypes/display_applications/configs/igv/genome_fasta.xml -> build/bdist.linux-armv7l/wheel/galaxy/datatypes/display_applications/configs/igv 2024-06-28T12:27:54,287 creating build/bdist.linux-armv7l/wheel/galaxy/datatypes/display_applications/configs/icn3d 2024-06-28T12:27:54,288 copying build/lib/galaxy/datatypes/display_applications/configs/icn3d/icn3d_simple.xml -> build/bdist.linux-armv7l/wheel/galaxy/datatypes/display_applications/configs/icn3d 2024-06-28T12:27:54,290 creating build/bdist.linux-armv7l/wheel/galaxy/datatypes/display_applications/configs/rviewer 2024-06-28T12:27:54,291 copying build/lib/galaxy/datatypes/display_applications/configs/rviewer/bed.xml -> build/bdist.linux-armv7l/wheel/galaxy/datatypes/display_applications/configs/rviewer 2024-06-28T12:27:54,293 copying build/lib/galaxy/datatypes/display_applications/configs/rviewer/vcf.xml -> build/bdist.linux-armv7l/wheel/galaxy/datatypes/display_applications/configs/rviewer 2024-06-28T12:27:54,295 creating build/bdist.linux-armv7l/wheel/galaxy/datatypes/display_applications/configs/ensembl 2024-06-28T12:27:54,296 copying build/lib/galaxy/datatypes/display_applications/configs/ensembl/ensembl_interval_as_bed.xml -> build/bdist.linux-armv7l/wheel/galaxy/datatypes/display_applications/configs/ensembl 2024-06-28T12:27:54,298 copying build/lib/galaxy/datatypes/display_applications/configs/ensembl/ensembl_gff.xml -> build/bdist.linux-armv7l/wheel/galaxy/datatypes/display_applications/configs/ensembl 2024-06-28T12:27:54,299 copying build/lib/galaxy/datatypes/display_applications/configs/ensembl/ensembl_bam.xml -> build/bdist.linux-armv7l/wheel/galaxy/datatypes/display_applications/configs/ensembl 2024-06-28T12:27:54,302 creating build/bdist.linux-armv7l/wheel/galaxy/datatypes/display_applications/configs/ucsc 2024-06-28T12:27:54,303 copying build/lib/galaxy/datatypes/display_applications/configs/ucsc/interval_as_bed.xml -> build/bdist.linux-armv7l/wheel/galaxy/datatypes/display_applications/configs/ucsc 2024-06-28T12:27:54,305 copying build/lib/galaxy/datatypes/display_applications/configs/ucsc/bam.xml -> build/bdist.linux-armv7l/wheel/galaxy/datatypes/display_applications/configs/ucsc 2024-06-28T12:27:54,307 copying build/lib/galaxy/datatypes/display_applications/configs/ucsc/bigbed.xml -> build/bdist.linux-armv7l/wheel/galaxy/datatypes/display_applications/configs/ucsc 2024-06-28T12:27:54,308 copying build/lib/galaxy/datatypes/display_applications/configs/ucsc/bigwig.xml -> build/bdist.linux-armv7l/wheel/galaxy/datatypes/display_applications/configs/ucsc 2024-06-28T12:27:54,310 copying build/lib/galaxy/datatypes/display_applications/configs/ucsc/trackhub.xml -> build/bdist.linux-armv7l/wheel/galaxy/datatypes/display_applications/configs/ucsc 2024-06-28T12:27:54,312 copying build/lib/galaxy/datatypes/display_applications/configs/ucsc/maf_customtrack.xml -> build/bdist.linux-armv7l/wheel/galaxy/datatypes/display_applications/configs/ucsc 2024-06-28T12:27:54,313 copying build/lib/galaxy/datatypes/display_applications/configs/ucsc/vcf.xml -> build/bdist.linux-armv7l/wheel/galaxy/datatypes/display_applications/configs/ucsc 2024-06-28T12:27:54,316 creating build/bdist.linux-armv7l/wheel/galaxy/datatypes/display_applications/configs/gbrowse 2024-06-28T12:27:54,317 copying build/lib/galaxy/datatypes/display_applications/configs/gbrowse/gbrowse_interval_as_bed.xml -> build/bdist.linux-armv7l/wheel/galaxy/datatypes/display_applications/configs/gbrowse 2024-06-28T12:27:54,319 copying build/lib/galaxy/datatypes/display_applications/configs/gbrowse/gbrowse_wig.xml -> build/bdist.linux-armv7l/wheel/galaxy/datatypes/display_applications/configs/gbrowse 2024-06-28T12:27:54,320 copying build/lib/galaxy/datatypes/display_applications/configs/gbrowse/gbrowse_gff.xml -> build/bdist.linux-armv7l/wheel/galaxy/datatypes/display_applications/configs/gbrowse 2024-06-28T12:27:54,323 creating build/bdist.linux-armv7l/wheel/galaxy/datatypes/display_applications/configs/iobio 2024-06-28T12:27:54,323 copying build/lib/galaxy/datatypes/display_applications/configs/iobio/bam.xml -> build/bdist.linux-armv7l/wheel/galaxy/datatypes/display_applications/configs/iobio 2024-06-28T12:27:54,325 copying build/lib/galaxy/datatypes/display_applications/configs/iobio/vcf.xml -> build/bdist.linux-armv7l/wheel/galaxy/datatypes/display_applications/configs/iobio 2024-06-28T12:27:54,327 creating build/bdist.linux-armv7l/wheel/galaxy/datatypes/display_applications/configs/intermine 2024-06-28T12:27:54,328 copying build/lib/galaxy/datatypes/display_applications/configs/intermine/intermine_simple.xml -> build/bdist.linux-armv7l/wheel/galaxy/datatypes/display_applications/configs/intermine 2024-06-28T12:27:54,330 creating build/bdist.linux-armv7l/wheel/galaxy/datatypes/display_applications/configs/igb 2024-06-28T12:27:54,331 copying build/lib/galaxy/datatypes/display_applications/configs/igb/bed.xml -> build/bdist.linux-armv7l/wheel/galaxy/datatypes/display_applications/configs/igb 2024-06-28T12:27:54,333 copying build/lib/galaxy/datatypes/display_applications/configs/igb/gtf.xml -> build/bdist.linux-armv7l/wheel/galaxy/datatypes/display_applications/configs/igb 2024-06-28T12:27:54,334 copying build/lib/galaxy/datatypes/display_applications/configs/igb/bb.xml -> build/bdist.linux-armv7l/wheel/galaxy/datatypes/display_applications/configs/igb 2024-06-28T12:27:54,336 copying build/lib/galaxy/datatypes/display_applications/configs/igb/bam.xml -> build/bdist.linux-armv7l/wheel/galaxy/datatypes/display_applications/configs/igb 2024-06-28T12:27:54,337 copying build/lib/galaxy/datatypes/display_applications/configs/igb/wig.xml -> build/bdist.linux-armv7l/wheel/galaxy/datatypes/display_applications/configs/igb 2024-06-28T12:27:54,339 copying build/lib/galaxy/datatypes/display_applications/configs/igb/bedgraph.xml -> build/bdist.linux-armv7l/wheel/galaxy/datatypes/display_applications/configs/igb 2024-06-28T12:27:54,341 copying build/lib/galaxy/datatypes/display_applications/configs/igb/bigwig.xml -> build/bdist.linux-armv7l/wheel/galaxy/datatypes/display_applications/configs/igb 2024-06-28T12:27:54,343 creating build/bdist.linux-armv7l/wheel/galaxy/datatypes/display_applications/configs/qiime 2024-06-28T12:27:54,344 creating build/bdist.linux-armv7l/wheel/galaxy/datatypes/display_applications/configs/qiime/qiime2 2024-06-28T12:27:54,345 copying build/lib/galaxy/datatypes/display_applications/configs/qiime/qiime2/q2view.xml -> build/bdist.linux-armv7l/wheel/galaxy/datatypes/display_applications/configs/qiime/qiime2 2024-06-28T12:27:54,347 copying build/lib/galaxy/datatypes/display_applications/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/datatypes/display_applications 2024-06-28T12:27:54,349 copying build/lib/galaxy/datatypes/display_applications/parameters.py -> build/bdist.linux-armv7l/wheel/galaxy/datatypes/display_applications 2024-06-28T12:27:54,351 copying build/lib/galaxy/datatypes/display_applications/application.py -> build/bdist.linux-armv7l/wheel/galaxy/datatypes/display_applications 2024-06-28T12:27:54,353 copying build/lib/galaxy/datatypes/hdf5.py -> build/bdist.linux-armv7l/wheel/galaxy/datatypes 2024-06-28T12:27:54,355 copying build/lib/galaxy/datatypes/set_metadata_tool.xml -> build/bdist.linux-armv7l/wheel/galaxy/datatypes 2024-06-28T12:27:54,357 copying build/lib/galaxy/datatypes/tracks.py -> build/bdist.linux-armv7l/wheel/galaxy/datatypes 2024-06-28T12:27:54,359 copying build/lib/galaxy/datatypes/_schema.py -> build/bdist.linux-armv7l/wheel/galaxy/datatypes 2024-06-28T12:27:54,361 copying build/lib/galaxy/datatypes/sniff.py -> build/bdist.linux-armv7l/wheel/galaxy/datatypes 2024-06-28T12:27:54,364 copying build/lib/galaxy/datatypes/images.py -> build/bdist.linux-armv7l/wheel/galaxy/datatypes 2024-06-28T12:27:54,367 copying build/lib/galaxy/datatypes/mothur.py -> build/bdist.linux-armv7l/wheel/galaxy/datatypes 2024-06-28T12:27:54,370 copying build/lib/galaxy/datatypes/chrominfo.py -> build/bdist.linux-armv7l/wheel/galaxy/datatypes 2024-06-28T12:27:54,371 copying build/lib/galaxy/datatypes/interval.py -> build/bdist.linux-armv7l/wheel/galaxy/datatypes 2024-06-28T12:27:54,375 copying build/lib/galaxy/datatypes/genetics.py -> build/bdist.linux-armv7l/wheel/galaxy/datatypes 2024-06-28T12:27:54,378 copying build/lib/galaxy/datatypes/checkers.py -> build/bdist.linux-armv7l/wheel/galaxy/datatypes 2024-06-28T12:27:54,380 copying build/lib/galaxy/datatypes/microarrays.py -> build/bdist.linux-armv7l/wheel/galaxy/datatypes 2024-06-28T12:27:54,382 copying build/lib/galaxy/datatypes/molecules.py -> build/bdist.linux-armv7l/wheel/galaxy/datatypes 2024-06-28T12:27:54,385 creating build/bdist.linux-armv7l/wheel/galaxy/datatypes/util 2024-06-28T12:27:54,386 copying build/lib/galaxy/datatypes/util/gff_util.py -> build/bdist.linux-armv7l/wheel/galaxy/datatypes/util 2024-06-28T12:27:54,388 copying build/lib/galaxy/datatypes/util/generic_util.py -> build/bdist.linux-armv7l/wheel/galaxy/datatypes/util 2024-06-28T12:27:54,390 copying build/lib/galaxy/datatypes/util/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/datatypes/util 2024-06-28T12:27:54,392 copying build/lib/galaxy/datatypes/util/maf_utilities.py -> build/bdist.linux-armv7l/wheel/galaxy/datatypes/util 2024-06-28T12:27:54,394 copying build/lib/galaxy/datatypes/qiime2.py -> build/bdist.linux-armv7l/wheel/galaxy/datatypes 2024-06-28T12:27:54,396 copying build/lib/galaxy/datatypes/constructive_solid_geometry.py -> build/bdist.linux-armv7l/wheel/galaxy/datatypes 2024-06-28T12:27:54,400 creating build/bdist.linux-armv7l/wheel/galaxy/quota 2024-06-28T12:27:54,401 copying build/lib/galaxy/quota/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/quota 2024-06-28T12:27:54,403 copying build/lib/galaxy/quota/_schema.py -> build/bdist.linux-armv7l/wheel/galaxy/quota 2024-06-28T12:27:54,405 copying build/lib/galaxy/py.typed -> build/bdist.linux-armv7l/wheel/galaxy 2024-06-28T12:27:54,407 copying build/lib/galaxy/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy 2024-06-28T12:27:54,409 creating build/bdist.linux-armv7l/wheel/galaxy/security 2024-06-28T12:27:54,410 copying build/lib/galaxy/security/validate_user_input.py -> build/bdist.linux-armv7l/wheel/galaxy/security 2024-06-28T12:27:54,412 copying build/lib/galaxy/security/idencoding.py -> build/bdist.linux-armv7l/wheel/galaxy/security 2024-06-28T12:27:54,415 copying build/lib/galaxy/security/vault.py -> build/bdist.linux-armv7l/wheel/galaxy/security 2024-06-28T12:27:54,417 copying build/lib/galaxy/security/ssh_util.py -> build/bdist.linux-armv7l/wheel/galaxy/security 2024-06-28T12:27:54,419 copying build/lib/galaxy/security/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/security 2024-06-28T12:27:54,421 copying build/lib/galaxy/security/passwords.py -> build/bdist.linux-armv7l/wheel/galaxy/security 2024-06-28T12:27:54,422 copying build/lib/galaxy/security/object_wrapper.py -> build/bdist.linux-armv7l/wheel/galaxy/security 2024-06-28T12:27:54,425 running install_egg_info 2024-06-28T12:27:54,435 Copying galaxy_data.egg-info to build/bdist.linux-armv7l/wheel/galaxy_data-24.0.3-py3.11.egg-info 2024-06-28T12:27:54,448 running install_scripts 2024-06-28T12:27:54,475 creating build/bdist.linux-armv7l/wheel/galaxy_data-24.0.3.dist-info/WHEEL 2024-06-28T12:27:54,477 creating '/tmp/pip-wheel-_uvlpc7w/.tmp-67fea_af/galaxy_data-24.0.3-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2024-06-28T12:27:54,479 adding 'galaxy/__init__.py' 2024-06-28T12:27:54,480 adding 'galaxy/py.typed' 2024-06-28T12:27:54,483 adding 'galaxy/datatypes/__init__.py' 2024-06-28T12:27:54,484 adding 'galaxy/datatypes/_schema.py' 2024-06-28T12:27:54,486 adding 'galaxy/datatypes/annotation.py' 2024-06-28T12:27:54,488 adding 'galaxy/datatypes/anvio.py' 2024-06-28T12:27:54,490 adding 'galaxy/datatypes/assembly.py' 2024-06-28T12:27:54,504 adding 'galaxy/datatypes/binary.py' 2024-06-28T12:27:54,507 adding 'galaxy/datatypes/blast.py' 2024-06-28T12:27:54,509 adding 'galaxy/datatypes/chain.py' 2024-06-28T12:27:54,510 adding 'galaxy/datatypes/checkers.py' 2024-06-28T12:27:54,512 adding 'galaxy/datatypes/chrominfo.py' 2024-06-28T12:27:54,515 adding 'galaxy/datatypes/constructive_solid_geometry.py' 2024-06-28T12:27:54,517 adding 'galaxy/datatypes/coverage.py' 2024-06-28T12:27:54,524 adding 'galaxy/datatypes/data.py' 2024-06-28T12:27:54,526 adding 'galaxy/datatypes/flow.py' 2024-06-28T12:27:54,531 adding 'galaxy/datatypes/genetics.py' 2024-06-28T12:27:54,533 adding 'galaxy/datatypes/gis.py' 2024-06-28T12:27:54,536 adding 'galaxy/datatypes/goldenpath.py' 2024-06-28T12:27:54,537 adding 'galaxy/datatypes/graph.py' 2024-06-28T12:27:54,539 adding 'galaxy/datatypes/hdf5.py' 2024-06-28T12:27:54,541 adding 'galaxy/datatypes/images.py' 2024-06-28T12:27:54,549 adding 'galaxy/datatypes/interval.py' 2024-06-28T12:27:54,552 adding 'galaxy/datatypes/isa.py' 2024-06-28T12:27:54,553 adding 'galaxy/datatypes/larch.py' 2024-06-28T12:27:54,555 adding 'galaxy/datatypes/media.py' 2024-06-28T12:27:54,556 adding 'galaxy/datatypes/metacyto.py' 2024-06-28T12:27:54,558 adding 'galaxy/datatypes/metadata.py' 2024-06-28T12:27:54,559 adding 'galaxy/datatypes/microarrays.py' 2024-06-28T12:27:54,564 adding 'galaxy/datatypes/molecules.py' 2024-06-28T12:27:54,568 adding 'galaxy/datatypes/mothur.py' 2024-06-28T12:27:54,570 adding 'galaxy/datatypes/msa.py' 2024-06-28T12:27:54,572 adding 'galaxy/datatypes/neo4j.py' 2024-06-28T12:27:54,573 adding 'galaxy/datatypes/ngsindex.py' 2024-06-28T12:27:54,575 adding 'galaxy/datatypes/phylip.py' 2024-06-28T12:27:54,576 adding 'galaxy/datatypes/plant_tribes.py' 2024-06-28T12:27:54,580 adding 'galaxy/datatypes/proteomics.py' 2024-06-28T12:27:54,582 adding 'galaxy/datatypes/protocols.py' 2024-06-28T12:27:54,584 adding 'galaxy/datatypes/qiime2.py' 2024-06-28T12:27:54,585 adding 'galaxy/datatypes/qualityscore.py' 2024-06-28T12:27:54,591 adding 'galaxy/datatypes/registry.py' 2024-06-28T12:27:54,598 adding 'galaxy/datatypes/sequence.py' 2024-06-28T12:27:54,600 adding 'galaxy/datatypes/set_metadata_tool.xml' 2024-06-28T12:27:54,604 adding 'galaxy/datatypes/sniff.py' 2024-06-28T12:27:54,606 adding 'galaxy/datatypes/spaln.py' 2024-06-28T12:27:54,608 adding 'galaxy/datatypes/speech.py' 2024-06-28T12:27:54,616 adding 'galaxy/datatypes/tabular.py' 2024-06-28T12:27:54,621 adding 'galaxy/datatypes/text.py' 2024-06-28T12:27:54,623 adding 'galaxy/datatypes/tracks.py' 2024-06-28T12:27:54,624 adding 'galaxy/datatypes/triples.py' 2024-06-28T12:27:54,626 adding 'galaxy/datatypes/upload_util.py' 2024-06-28T12:27:54,627 adding 'galaxy/datatypes/xml.py' 2024-06-28T12:27:54,631 adding 'galaxy/datatypes/converters/__init__.py' 2024-06-28T12:27:54,632 adding 'galaxy/datatypes/converters/bam_to_bai.xml' 2024-06-28T12:27:54,633 adding 'galaxy/datatypes/converters/bam_to_bigwig_converter.xml' 2024-06-28T12:27:54,634 adding 'galaxy/datatypes/converters/bcf_bcf_uncompressed_converter.xml' 2024-06-28T12:27:54,636 adding 'galaxy/datatypes/converters/bed_gff_or_vcf_to_bigwig_converter.xml' 2024-06-28T12:27:54,637 adding 'galaxy/datatypes/converters/bed_to_fli_converter.xml' 2024-06-28T12:27:54,638 adding 'galaxy/datatypes/converters/bed_to_gff_converter.py' 2024-06-28T12:27:54,640 adding 'galaxy/datatypes/converters/bed_to_gff_converter.xml' 2024-06-28T12:27:54,641 adding 'galaxy/datatypes/converters/bed_to_interval_index_converter.xml' 2024-06-28T12:27:54,642 adding 'galaxy/datatypes/converters/bedgraph_to_bigwig_converter.xml' 2024-06-28T12:27:54,643 adding 'galaxy/datatypes/converters/bigwig_to_wig_converter.xml' 2024-06-28T12:27:54,645 adding 'galaxy/datatypes/converters/biom.xml' 2024-06-28T12:27:54,646 adding 'galaxy/datatypes/converters/bz2_to_uncompressed.xml' 2024-06-28T12:27:54,647 adding 'galaxy/datatypes/converters/cml_to_smi_converter.xml' 2024-06-28T12:27:54,648 adding 'galaxy/datatypes/converters/cram_to_bam_converter.xml' 2024-06-28T12:27:54,650 adding 'galaxy/datatypes/converters/csv_to_tabular.xml' 2024-06-28T12:27:54,651 adding 'galaxy/datatypes/converters/fasta_to_2bit.xml' 2024-06-28T12:27:54,652 adding 'galaxy/datatypes/converters/fasta_to_bowtie_base_index_converter.xml' 2024-06-28T12:27:54,653 adding 'galaxy/datatypes/converters/fasta_to_bowtie_color_index_converter.xml' 2024-06-28T12:27:54,654 adding 'galaxy/datatypes/converters/fasta_to_fai.xml' 2024-06-28T12:27:54,656 adding 'galaxy/datatypes/converters/fasta_to_len.py' 2024-06-28T12:27:54,657 adding 'galaxy/datatypes/converters/fasta_to_len.xml' 2024-06-28T12:27:54,658 adding 'galaxy/datatypes/converters/fasta_to_tabular_converter.py' 2024-06-28T12:27:54,659 adding 'galaxy/datatypes/converters/fasta_to_tabular_converter.xml' 2024-06-28T12:27:54,660 adding 'galaxy/datatypes/converters/fastq_to_fqtoc.py' 2024-06-28T12:27:54,661 adding 'galaxy/datatypes/converters/fastq_to_fqtoc.xml' 2024-06-28T12:27:54,663 adding 'galaxy/datatypes/converters/fastqsolexa_to_fasta_converter.py' 2024-06-28T12:27:54,664 adding 'galaxy/datatypes/converters/fastqsolexa_to_fasta_converter.xml' 2024-06-28T12:27:54,665 adding 'galaxy/datatypes/converters/fastqsolexa_to_qual_converter.py' 2024-06-28T12:27:54,667 adding 'galaxy/datatypes/converters/fastqsolexa_to_qual_converter.xml' 2024-06-28T12:27:54,668 adding 'galaxy/datatypes/converters/gff_to_bed_converter.py' 2024-06-28T12:27:54,669 adding 'galaxy/datatypes/converters/gff_to_bed_converter.xml' 2024-06-28T12:27:54,670 adding 'galaxy/datatypes/converters/gff_to_fli_converter.xml' 2024-06-28T12:27:54,671 adding 'galaxy/datatypes/converters/gff_to_interval_index_converter.py' 2024-06-28T12:27:54,672 adding 'galaxy/datatypes/converters/gff_to_interval_index_converter.xml' 2024-06-28T12:27:54,673 adding 'galaxy/datatypes/converters/gro_to_pdb.xml' 2024-06-28T12:27:54,675 adding 'galaxy/datatypes/converters/gz_to_uncompressed.xml' 2024-06-28T12:27:54,676 adding 'galaxy/datatypes/converters/inchi_to_mol_converter.xml' 2024-06-28T12:27:54,677 adding 'galaxy/datatypes/converters/interval_to_bed12_converter.xml' 2024-06-28T12:27:54,679 adding 'galaxy/datatypes/converters/interval_to_bed6_converter.xml' 2024-06-28T12:27:54,680 adding 'galaxy/datatypes/converters/interval_to_bed_converter.py' 2024-06-28T12:27:54,681 adding 'galaxy/datatypes/converters/interval_to_bed_converter.xml' 2024-06-28T12:27:54,683 adding 'galaxy/datatypes/converters/interval_to_bedstrict_converter.py' 2024-06-28T12:27:54,684 adding 'galaxy/datatypes/converters/interval_to_bedstrict_converter.xml' 2024-06-28T12:27:54,686 adding 'galaxy/datatypes/converters/interval_to_bgzip_converter.xml' 2024-06-28T12:27:54,687 adding 'galaxy/datatypes/converters/interval_to_bigwig_converter.xml' 2024-06-28T12:27:54,688 adding 'galaxy/datatypes/converters/interval_to_fli.py' 2024-06-28T12:27:54,690 adding 'galaxy/datatypes/converters/interval_to_interval_index_converter.py' 2024-06-28T12:27:54,691 adding 'galaxy/datatypes/converters/interval_to_interval_index_converter.xml' 2024-06-28T12:27:54,692 adding 'galaxy/datatypes/converters/interval_to_tabix_converter.xml' 2024-06-28T12:27:54,693 adding 'galaxy/datatypes/converters/len_to_linecount.xml' 2024-06-28T12:27:54,695 adding 'galaxy/datatypes/converters/lped_to_fped_converter.py' 2024-06-28T12:27:54,696 adding 'galaxy/datatypes/converters/lped_to_fped_converter.xml' 2024-06-28T12:27:54,698 adding 'galaxy/datatypes/converters/lped_to_pbed_converter.py' 2024-06-28T12:27:54,699 adding 'galaxy/datatypes/converters/lped_to_pbed_converter.xml' 2024-06-28T12:27:54,700 adding 'galaxy/datatypes/converters/maf_to_fasta_converter.py' 2024-06-28T12:27:54,701 adding 'galaxy/datatypes/converters/maf_to_fasta_converter.xml' 2024-06-28T12:27:54,703 adding 'galaxy/datatypes/converters/maf_to_interval_converter.py' 2024-06-28T12:27:54,704 adding 'galaxy/datatypes/converters/maf_to_interval_converter.xml' 2024-06-28T12:27:54,705 adding 'galaxy/datatypes/converters/mdconvert.xml' 2024-06-28T12:27:54,706 adding 'galaxy/datatypes/converters/mol2_to_mol_converter.xml' 2024-06-28T12:27:54,708 adding 'galaxy/datatypes/converters/molecules_converter.xml' 2024-06-28T12:27:54,709 adding 'galaxy/datatypes/converters/neostorezip_to_neostore_converter.xml' 2024-06-28T12:27:54,710 adding 'galaxy/datatypes/converters/parquet_to_csv_converter.py' 2024-06-28T12:27:54,712 adding 'galaxy/datatypes/converters/parquet_to_csv_converter.xml' 2024-06-28T12:27:54,713 adding 'galaxy/datatypes/converters/pbed_ldreduced_converter.py' 2024-06-28T12:27:54,714 adding 'galaxy/datatypes/converters/pbed_ldreduced_converter.xml' 2024-06-28T12:27:54,716 adding 'galaxy/datatypes/converters/pbed_to_lped_converter.py' 2024-06-28T12:27:54,717 adding 'galaxy/datatypes/converters/pbed_to_lped_converter.xml' 2024-06-28T12:27:54,718 adding 'galaxy/datatypes/converters/pdb_to_gro.xml' 2024-06-28T12:27:54,719 adding 'galaxy/datatypes/converters/picard_interval_list_to_bed6_converter.py' 2024-06-28T12:27:54,720 adding 'galaxy/datatypes/converters/picard_interval_list_to_bed6_converter.xml' 2024-06-28T12:27:54,721 adding 'galaxy/datatypes/converters/pileup_to_interval_index_converter.py' 2024-06-28T12:27:54,723 adding 'galaxy/datatypes/converters/pileup_to_interval_index_converter.xml' 2024-06-28T12:27:54,724 adding 'galaxy/datatypes/converters/ref_to_seq_taxonomy_converter.py' 2024-06-28T12:27:54,725 adding 'galaxy/datatypes/converters/ref_to_seq_taxonomy_converter.xml' 2024-06-28T12:27:54,727 adding 'galaxy/datatypes/converters/sam_to_bigwig_converter.xml' 2024-06-28T12:27:54,728 adding 'galaxy/datatypes/converters/sam_to_unsorted_bam.xml' 2024-06-28T12:27:54,729 adding 'galaxy/datatypes/converters/smi_to_mol_converter.xml' 2024-06-28T12:27:54,730 adding 'galaxy/datatypes/converters/smi_to_smi_converter.xml' 2024-06-28T12:27:54,731 adding 'galaxy/datatypes/converters/tabular_csv.py' 2024-06-28T12:27:54,733 adding 'galaxy/datatypes/converters/tabular_to_csv.xml' 2024-06-28T12:27:54,734 adding 'galaxy/datatypes/converters/tabular_to_dbnsfp.xml' 2024-06-28T12:27:54,735 adding 'galaxy/datatypes/converters/tar_to_directory.xml' 2024-06-28T12:27:54,736 adding 'galaxy/datatypes/converters/to_coordinate_sorted_bam.xml' 2024-06-28T12:27:54,738 adding 'galaxy/datatypes/converters/to_qname_sorted_bam.xml' 2024-06-28T12:27:54,739 adding 'galaxy/datatypes/converters/uncompressed_to_gz.xml' 2024-06-28T12:27:54,740 adding 'galaxy/datatypes/converters/vcf_bgzip_to_tabix_converter.xml' 2024-06-28T12:27:54,741 adding 'galaxy/datatypes/converters/vcf_to_interval_index_converter.py' 2024-06-28T12:27:54,742 adding 'galaxy/datatypes/converters/vcf_to_interval_index_converter.xml' 2024-06-28T12:27:54,744 adding 'galaxy/datatypes/converters/vcf_to_vcf_bgzip_converter.xml' 2024-06-28T12:27:54,745 adding 'galaxy/datatypes/converters/wig_to_bigwig_converter.xml' 2024-06-28T12:27:54,746 adding 'galaxy/datatypes/converters/wiggle_to_simple_converter.py' 2024-06-28T12:27:54,748 adding 'galaxy/datatypes/converters/wiggle_to_simple_converter.xml' 2024-06-28T12:27:54,750 adding 'galaxy/datatypes/dataproviders/__init__.py' 2024-06-28T12:27:54,752 adding 'galaxy/datatypes/dataproviders/base.py' 2024-06-28T12:27:54,753 adding 'galaxy/datatypes/dataproviders/chunk.py' 2024-06-28T12:27:54,756 adding 'galaxy/datatypes/dataproviders/column.py' 2024-06-28T12:27:54,759 adding 'galaxy/datatypes/dataproviders/dataset.py' 2024-06-28T12:27:54,761 adding 'galaxy/datatypes/dataproviders/decorators.py' 2024-06-28T12:27:54,762 adding 'galaxy/datatypes/dataproviders/exceptions.py' 2024-06-28T12:27:54,763 adding 'galaxy/datatypes/dataproviders/external.py' 2024-06-28T12:27:54,765 adding 'galaxy/datatypes/dataproviders/hierarchy.py' 2024-06-28T12:27:54,767 adding 'galaxy/datatypes/dataproviders/line.py' 2024-06-28T12:27:54,769 adding 'galaxy/datatypes/display_applications/__init__.py' 2024-06-28T12:27:54,771 adding 'galaxy/datatypes/display_applications/application.py' 2024-06-28T12:27:54,773 adding 'galaxy/datatypes/display_applications/parameters.py' 2024-06-28T12:27:54,774 adding 'galaxy/datatypes/display_applications/util.py' 2024-06-28T12:27:54,777 adding 'galaxy/datatypes/display_applications/configs/biom/biom_simple.xml' 2024-06-28T12:27:54,778 adding 'galaxy/datatypes/display_applications/configs/ensembl/ensembl_bam.xml' 2024-06-28T12:27:54,780 adding 'galaxy/datatypes/display_applications/configs/ensembl/ensembl_gff.xml' 2024-06-28T12:27:54,781 adding 'galaxy/datatypes/display_applications/configs/ensembl/ensembl_interval_as_bed.xml' 2024-06-28T12:27:54,783 adding 'galaxy/datatypes/display_applications/configs/gbrowse/gbrowse_gff.xml' 2024-06-28T12:27:54,784 adding 'galaxy/datatypes/display_applications/configs/gbrowse/gbrowse_interval_as_bed.xml' 2024-06-28T12:27:54,785 adding 'galaxy/datatypes/display_applications/configs/gbrowse/gbrowse_wig.xml' 2024-06-28T12:27:54,787 adding 'galaxy/datatypes/display_applications/configs/icn3d/icn3d_simple.xml' 2024-06-28T12:27:54,788 adding 'galaxy/datatypes/display_applications/configs/igb/bam.xml' 2024-06-28T12:27:54,789 adding 'galaxy/datatypes/display_applications/configs/igb/bb.xml' 2024-06-28T12:27:54,791 adding 'galaxy/datatypes/display_applications/configs/igb/bed.xml' 2024-06-28T12:27:54,792 adding 'galaxy/datatypes/display_applications/configs/igb/bedgraph.xml' 2024-06-28T12:27:54,793 adding 'galaxy/datatypes/display_applications/configs/igb/bigwig.xml' 2024-06-28T12:27:54,794 adding 'galaxy/datatypes/display_applications/configs/igb/gtf.xml' 2024-06-28T12:27:54,795 adding 'galaxy/datatypes/display_applications/configs/igb/wig.xml' 2024-06-28T12:27:54,797 adding 'galaxy/datatypes/display_applications/configs/igv/bam.xml' 2024-06-28T12:27:54,799 adding 'galaxy/datatypes/display_applications/configs/igv/bigwig.xml' 2024-06-28T12:27:54,800 adding 'galaxy/datatypes/display_applications/configs/igv/genbank.xml' 2024-06-28T12:27:54,802 adding 'galaxy/datatypes/display_applications/configs/igv/genome_fasta.xml' 2024-06-28T12:27:54,803 adding 'galaxy/datatypes/display_applications/configs/igv/gff.xml' 2024-06-28T12:27:54,804 adding 'galaxy/datatypes/display_applications/configs/igv/interval_as_bed.xml' 2024-06-28T12:27:54,806 adding 'galaxy/datatypes/display_applications/configs/igv/vcf.xml' 2024-06-28T12:27:54,808 adding 'galaxy/datatypes/display_applications/configs/image/avivator.xml' 2024-06-28T12:27:54,809 adding 'galaxy/datatypes/display_applications/configs/intermine/intermine_simple.xml' 2024-06-28T12:27:54,811 adding 'galaxy/datatypes/display_applications/configs/iobio/bam.xml' 2024-06-28T12:27:54,812 adding 'galaxy/datatypes/display_applications/configs/iobio/vcf.xml' 2024-06-28T12:27:54,814 adding 'galaxy/datatypes/display_applications/configs/minerva/tabular.xml' 2024-06-28T12:27:54,816 adding 'galaxy/datatypes/display_applications/configs/qiime/qiime2/q2view.xml' 2024-06-28T12:27:54,818 adding 'galaxy/datatypes/display_applications/configs/rviewer/bed.xml' 2024-06-28T12:27:54,819 adding 'galaxy/datatypes/display_applications/configs/rviewer/vcf.xml' 2024-06-28T12:27:54,821 adding 'galaxy/datatypes/display_applications/configs/ucsc/bam.xml' 2024-06-28T12:27:54,822 adding 'galaxy/datatypes/display_applications/configs/ucsc/bigbed.xml' 2024-06-28T12:27:54,823 adding 'galaxy/datatypes/display_applications/configs/ucsc/bigwig.xml' 2024-06-28T12:27:54,825 adding 'galaxy/datatypes/display_applications/configs/ucsc/interval_as_bed.xml' 2024-06-28T12:27:54,826 adding 'galaxy/datatypes/display_applications/configs/ucsc/maf_customtrack.xml' 2024-06-28T12:27:54,827 adding 'galaxy/datatypes/display_applications/configs/ucsc/trackhub.xml' 2024-06-28T12:27:54,828 adding 'galaxy/datatypes/display_applications/configs/ucsc/vcf.xml' 2024-06-28T12:27:54,831 adding 'galaxy/datatypes/display_applications/xsd/geda.xsd' 2024-06-28T12:27:54,833 adding 'galaxy/datatypes/util/__init__.py' 2024-06-28T12:27:54,834 adding 'galaxy/datatypes/util/generic_util.py' 2024-06-28T12:27:54,837 adding 'galaxy/datatypes/util/gff_util.py' 2024-06-28T12:27:54,841 adding 'galaxy/datatypes/util/maf_utilities.py' 2024-06-28T12:27:54,889 adding 'galaxy/model/__init__.py' 2024-06-28T12:27:54,893 adding 'galaxy/model/base.py' 2024-06-28T12:27:54,895 adding 'galaxy/model/custom_types.py' 2024-06-28T12:27:54,896 adding 'galaxy/model/database_heartbeat.py' 2024-06-28T12:27:54,898 adding 'galaxy/model/database_object_names.py' 2024-06-28T12:27:54,899 adding 'galaxy/model/database_utils.py' 2024-06-28T12:27:54,901 adding 'galaxy/model/deferred.py' 2024-06-28T12:27:54,902 adding 'galaxy/model/index_filter_util.py' 2024-06-28T12:27:54,903 adding 'galaxy/model/item_attrs.py' 2024-06-28T12:27:54,905 adding 'galaxy/model/mapping.py' 2024-06-28T12:27:54,908 adding 'galaxy/model/metadata.py' 2024-06-28T12:27:54,910 adding 'galaxy/model/none_like.py' 2024-06-28T12:27:54,911 adding 'galaxy/model/scoped_session.py' 2024-06-28T12:27:54,920 adding 'galaxy/model/security.py' 2024-06-28T12:27:54,924 adding 'galaxy/model/tags.py' 2024-06-28T12:27:54,925 adding 'galaxy/model/dataset_collections/__init__.py' 2024-06-28T12:27:54,927 adding 'galaxy/model/dataset_collections/builder.py' 2024-06-28T12:27:54,928 adding 'galaxy/model/dataset_collections/matching.py' 2024-06-28T12:27:54,930 adding 'galaxy/model/dataset_collections/registry.py' 2024-06-28T12:27:54,931 adding 'galaxy/model/dataset_collections/structure.py' 2024-06-28T12:27:54,932 adding 'galaxy/model/dataset_collections/subcollections.py' 2024-06-28T12:27:54,934 adding 'galaxy/model/dataset_collections/type_description.py' 2024-06-28T12:27:54,935 adding 'galaxy/model/dataset_collections/types/__init__.py' 2024-06-28T12:27:54,936 adding 'galaxy/model/dataset_collections/types/list.py' 2024-06-28T12:27:54,938 adding 'galaxy/model/dataset_collections/types/paired.py' 2024-06-28T12:27:54,939 adding 'galaxy/model/migrations/README.md' 2024-06-28T12:27:54,941 adding 'galaxy/model/migrations/__init__.py' 2024-06-28T12:27:54,943 adding 'galaxy/model/migrations/alembic.ini' 2024-06-28T12:27:54,945 adding 'galaxy/model/migrations/base.py' 2024-06-28T12:27:54,946 adding 'galaxy/model/migrations/dbscript.py' 2024-06-28T12:27:54,948 adding 'galaxy/model/migrations/exceptions.py' 2024-06-28T12:27:54,949 adding 'galaxy/model/migrations/scripts.py' 2024-06-28T12:27:54,951 adding 'galaxy/model/migrations/util.py' 2024-06-28T12:27:54,953 adding 'galaxy/model/migrations/alembic/env.py' 2024-06-28T12:27:54,954 adding 'galaxy/model/migrations/alembic/script.py.mako' 2024-06-28T12:27:54,959 adding 'galaxy/model/migrations/alembic/versions_gxy/186d4835587b_drop_job_state_history_update_time_.py' 2024-06-28T12:27:54,960 adding 'galaxy/model/migrations/alembic/versions_gxy/2d749563e1fe_add_notification_system_tables.py' 2024-06-28T12:27:54,962 adding 'galaxy/model/migrations/alembic/versions_gxy/2dc3386d091f_add_indexes_for_workflow_comment_.py' 2024-06-28T12:27:54,963 adding 'galaxy/model/migrations/alembic/versions_gxy/3100452fa030_add_workflow_invocation_message_table.py' 2024-06-28T12:27:54,964 adding 'galaxy/model/migrations/alembic/versions_gxy/3356bc2ecfc4_drop_view.py' 2024-06-28T12:27:54,965 adding 'galaxy/model/migrations/alembic/versions_gxy/3a2914d703ca_add_index_wf_r_s_s__workflow_invocation_.py' 2024-06-28T12:27:54,967 adding 'galaxy/model/migrations/alembic/versions_gxy/460d0ecd1dd8_.py' 2024-06-28T12:27:54,968 adding 'galaxy/model/migrations/alembic/versions_gxy/518c8438a91b_add_when_expression_column.py' 2024-06-28T12:27:54,969 adding 'galaxy/model/migrations/alembic/versions_gxy/55f02fd8ab6c_add_index_on_hda_extension.py' 2024-06-28T12:27:54,970 adding 'galaxy/model/migrations/alembic/versions_gxy/59e024ceaca1_add_export_association_table.py' 2024-06-28T12:27:54,971 adding 'galaxy/model/migrations/alembic/versions_gxy/6a67bf27e6a6_deferred_data_tables.py' 2024-06-28T12:27:54,973 adding 'galaxy/model/migrations/alembic/versions_gxy/8a19186a6ee7_add_columns_to_interactivetool_entry_point.py' 2024-06-28T12:27:54,974 adding 'galaxy/model/migrations/alembic/versions_gxy/92fb564c7095_.py' 2024-06-28T12:27:54,976 adding 'galaxy/model/migrations/alembic/versions_gxy/9540a051226e_preferred_object_store_ids.py' 2024-06-28T12:27:54,977 adding 'galaxy/model/migrations/alembic/versions_gxy/987ce9839ecb_create_celery_user_rate_limit_table.py' 2024-06-28T12:27:54,978 adding 'galaxy/model/migrations/alembic/versions_gxy/b182f655505f_add_workflow_source_metadata_column.py' 2024-06-28T12:27:54,979 adding 'galaxy/model/migrations/alembic/versions_gxy/b855b714e8b8_make_api_keys_deleted_non_nullable.py' 2024-06-28T12:27:54,980 adding 'galaxy/model/migrations/alembic/versions_gxy/c39f1de47a04_add_skipped_state_to_collection_job_.py' 2024-06-28T12:27:54,982 adding 'galaxy/model/migrations/alembic/versions_gxy/caa7742f7bca_add_index_wf_r_i_p__workflow_invocation_.py' 2024-06-28T12:27:54,983 adding 'galaxy/model/migrations/alembic/versions_gxy/d0583094c8cd_add_quota_source_labels.py' 2024-06-28T12:27:54,984 adding 'galaxy/model/migrations/alembic/versions_gxy/ddbdbc40bdc1_add_workflow_comment_table.py' 2024-06-28T12:27:54,985 adding 'galaxy/model/migrations/alembic/versions_gxy/e0561d5fc8c7_add_archived_columns_to_history.py' 2024-06-28T12:27:54,987 adding 'galaxy/model/migrations/alembic/versions_gxy/e0e3bb173ee6_add_column_deleted_to_api_keys.py' 2024-06-28T12:27:54,988 adding 'galaxy/model/migrations/alembic/versions_gxy/e7b6dcb09efd_create_gxy_branch.py' 2024-06-28T12:27:54,989 adding 'galaxy/model/migrations/alembic/versions_gxy/e93c5d0b47a9_alter_column_external_user_id.py' 2024-06-28T12:27:54,990 adding 'galaxy/model/migrations/alembic/versions_tsi/d4a650f47a3c_create_tsi_branch.py' 2024-06-28T12:27:54,992 adding 'galaxy/model/orm/__init__.py' 2024-06-28T12:27:54,993 adding 'galaxy/model/orm/engine_factory.py' 2024-06-28T12:27:54,994 adding 'galaxy/model/orm/now.py' 2024-06-28T12:27:54,996 adding 'galaxy/model/orm/scripts.py' 2024-06-28T12:27:54,997 adding 'galaxy/model/orm/util.py' 2024-06-28T12:27:55,012 adding 'galaxy/model/store/__init__.py' 2024-06-28T12:27:55,014 adding 'galaxy/model/store/_bco_convert_utils.py' 2024-06-28T12:27:55,015 adding 'galaxy/model/store/build_objects.py' 2024-06-28T12:27:55,020 adding 'galaxy/model/store/discover.py' 2024-06-28T12:27:55,022 adding 'galaxy/model/store/load_objects.py' 2024-06-28T12:27:55,024 adding 'galaxy/model/store/ro_crate_utils.py' 2024-06-28T12:27:55,028 adding 'galaxy/model/tool_shed_install/__init__.py' 2024-06-28T12:27:55,029 adding 'galaxy/model/tool_shed_install/mapping.py' 2024-06-28T12:27:55,030 adding 'galaxy/model/triggers/__init__.py' 2024-06-28T12:27:55,032 adding 'galaxy/model/triggers/history_update_time_field.py' 2024-06-28T12:27:55,033 adding 'galaxy/model/triggers/update_audit_table.py' 2024-06-28T12:27:55,034 adding 'galaxy/model/triggers/utils.py' 2024-06-28T12:27:55,036 adding 'galaxy/model/unittest_utils/__init__.py' 2024-06-28T12:27:55,037 adding 'galaxy/model/unittest_utils/beaker_testing_utils.py' 2024-06-28T12:27:55,039 adding 'galaxy/model/unittest_utils/data_app.py' 2024-06-28T12:27:55,041 adding 'galaxy/model/unittest_utils/gxy_model_fixtures.py' 2024-06-28T12:27:55,043 adding 'galaxy/model/unittest_utils/mapping_testing_utils.py' 2024-06-28T12:27:55,044 adding 'galaxy/model/unittest_utils/migration_scripts_testing_utils.py' 2024-06-28T12:27:55,046 adding 'galaxy/model/unittest_utils/model_testing_utils.py' 2024-06-28T12:27:55,048 adding 'galaxy/model/unittest_utils/store_fixtures.py' 2024-06-28T12:27:55,049 adding 'galaxy/model/unittest_utils/tsi_model_fixtures.py' 2024-06-28T12:27:55,052 adding 'galaxy/quota/__init__.py' 2024-06-28T12:27:55,054 adding 'galaxy/quota/_schema.py' 2024-06-28T12:27:55,056 adding 'galaxy/security/__init__.py' 2024-06-28T12:27:55,058 adding 'galaxy/security/idencoding.py' 2024-06-28T12:27:55,060 adding 'galaxy/security/object_wrapper.py' 2024-06-28T12:27:55,061 adding 'galaxy/security/passwords.py' 2024-06-28T12:27:55,063 adding 'galaxy/security/ssh_util.py' 2024-06-28T12:27:55,064 adding 'galaxy/security/validate_user_input.py' 2024-06-28T12:27:55,066 adding 'galaxy/security/vault.py' 2024-06-28T12:27:55,070 adding 'galaxy_data-24.0.3.dist-info/LICENSE' 2024-06-28T12:27:55,073 adding 'galaxy_data-24.0.3.dist-info/METADATA' 2024-06-28T12:27:55,074 adding 'galaxy_data-24.0.3.dist-info/WHEEL' 2024-06-28T12:27:55,075 adding 'galaxy_data-24.0.3.dist-info/entry_points.txt' 2024-06-28T12:27:55,076 adding 'galaxy_data-24.0.3.dist-info/top_level.txt' 2024-06-28T12:27:55,081 adding 'galaxy_data-24.0.3.dist-info/RECORD' 2024-06-28T12:27:55,094 removing build/bdist.linux-armv7l/wheel 2024-06-28T12:27:55,260 Building wheel for galaxy-data (pyproject.toml): finished with status 'done' 2024-06-28T12:27:55,282 Created wheel for galaxy-data: filename=galaxy_data-24.0.3-py3-none-any.whl size=672990 sha256=24c6b51777b0113a4b2482bcb341da59dd52cf42a3a5d4ecbe15ec60cc81c4e2 2024-06-28T12:27:55,283 Stored in directory: /tmp/pip-ephem-wheel-cache-k59o8y_5/wheels/32/41/8c/398b1245ae0d08d228631126c78cdec4b4c557255ea80f2cba 2024-06-28T12:27:55,310 Successfully built galaxy-data 2024-06-28T12:27:55,330 Removed build tracker: '/tmp/pip-build-tracker-ge8t7lam'