2024-06-28T12:28:29,329 Created temporary directory: /tmp/pip-build-tracker-u7p1rp2x 2024-06-28T12:28:29,330 Initialized build tracking at /tmp/pip-build-tracker-u7p1rp2x 2024-06-28T12:28:29,331 Created build tracker: /tmp/pip-build-tracker-u7p1rp2x 2024-06-28T12:28:29,331 Entered build tracker: /tmp/pip-build-tracker-u7p1rp2x 2024-06-28T12:28:29,332 Created temporary directory: /tmp/pip-wheel-lxoeub7x 2024-06-28T12:28:29,335 Created temporary directory: /tmp/pip-ephem-wheel-cache-0myxg_1h 2024-06-28T12:28:29,358 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2024-06-28T12:28:29,361 2 location(s) to search for versions of galaxy-app: 2024-06-28T12:28:29,361 * https://pypi.org/simple/galaxy-app/ 2024-06-28T12:28:29,361 * https://www.piwheels.org/simple/galaxy-app/ 2024-06-28T12:28:29,362 Fetching project page and analyzing links: https://pypi.org/simple/galaxy-app/ 2024-06-28T12:28:29,363 Getting page https://pypi.org/simple/galaxy-app/ 2024-06-28T12:28:29,364 Found index url https://pypi.org/simple/ 2024-06-28T12:28:29,583 Fetched page https://pypi.org/simple/galaxy-app/ as application/vnd.pypi.simple.v1+json 2024-06-28T12:28:29,591 Found link https://files.pythonhosted.org/packages/cd/3d/994b7f4faaee2a95a31af125e96734f3daa9f39e6decd0f7a09950ef686c/galaxy-app-20.5.0.tar.gz (from https://pypi.org/simple/galaxy-app/), version: 20.5.0 2024-06-28T12:28:29,591 Skipping link: No binaries permitted for galaxy-app: https://files.pythonhosted.org/packages/0e/45/8db530ec699e0de1e6307285126e8bba3dca8ffe575e9994b0c56aa01e35/galaxy_app-20.5.0-py2.py3-none-any.whl (from https://pypi.org/simple/galaxy-app/) 2024-06-28T12:28:29,592 Found link https://files.pythonhosted.org/packages/39/7b/ed47204e833f922db4fc7e96d8de33650a57856999b95145a9e5414270b1/galaxy-app-20.9.0.tar.gz (from https://pypi.org/simple/galaxy-app/), version: 20.9.0 2024-06-28T12:28:29,592 Skipping link: No binaries permitted for galaxy-app: https://files.pythonhosted.org/packages/74/6e/cd07342b2790bc4ec0f3d03eb559fdee76513d00657c2897ad5517615704/galaxy_app-20.9.0-py2.py3-none-any.whl (from https://pypi.org/simple/galaxy-app/) 2024-06-28T12:28:29,593 Found link https://files.pythonhosted.org/packages/bb/d4/bbe8b30220b07000291c571508565a6b2c803c8b3580f4edb50dec7dfb25/galaxy-app-21.9.0.tar.gz (from https://pypi.org/simple/galaxy-app/), version: 21.9.0 2024-06-28T12:28:29,594 Skipping link: No binaries permitted for galaxy-app: https://files.pythonhosted.org/packages/2a/c8/f3c20efbe004b6968ac2f89cfc60e77d96b0a45844d864f7d4f84e985b6e/galaxy_app-21.9.0-py2.py3-none-any.whl (from https://pypi.org/simple/galaxy-app/) 2024-06-28T12:28:29,594 Found link https://files.pythonhosted.org/packages/ac/8b/73350a0f611102667eabde41fa8bcd6ffb49ed5a726f6077366504f8bb42/galaxy-app-22.1.1.tar.gz (from https://pypi.org/simple/galaxy-app/), version: 22.1.1 2024-06-28T12:28:29,595 Skipping link: No binaries permitted for galaxy-app: https://files.pythonhosted.org/packages/e4/40/ca62a2cd45b022310bd0d4ce05f5ed3d59e8f994d19e31c3fc0410da4b45/galaxy_app-22.1.1-py2.py3-none-any.whl (from https://pypi.org/simple/galaxy-app/) 2024-06-28T12:28:29,596 Found link https://files.pythonhosted.org/packages/89/47/4d9cc66c90213feb9f0a8e10fcea2ab93f66d90f289f5e0d72ef6dafcab9/galaxy-app-23.0.1.tar.gz (from https://pypi.org/simple/galaxy-app/) (requires-python:>=3.7), version: 23.0.1 2024-06-28T12:28:29,597 Skipping link: No binaries permitted for galaxy-app: https://files.pythonhosted.org/packages/d6/1d/9c9721f6bdcb3de36c2f9946af6639696d33f43a3934d9edd95f00d349e5/galaxy_app-23.0.1-py3-none-any.whl (from https://pypi.org/simple/galaxy-app/) (requires-python:>=3.7) 2024-06-28T12:28:29,598 Found link https://files.pythonhosted.org/packages/fc/5e/993fc4df93a146b8e11719fd70d92dddf4b5a2e14c2a5006ad5c7320857e/galaxy-app-23.0.2.tar.gz (from https://pypi.org/simple/galaxy-app/) (requires-python:>=3.7), version: 23.0.2 2024-06-28T12:28:29,599 Skipping link: No binaries permitted for galaxy-app: https://files.pythonhosted.org/packages/7c/cf/3e8752a5c5858f6a096a04d57f31653c5fdbdcb0740ec4f00d29db037a65/galaxy_app-23.0.2-py3-none-any.whl (from https://pypi.org/simple/galaxy-app/) (requires-python:>=3.7) 2024-06-28T12:28:29,600 Found link https://files.pythonhosted.org/packages/86/9a/1c845471521630df79226096bed68473fe2e355985ac4c2830ee0f2d6420/galaxy-app-23.0.3.tar.gz (from https://pypi.org/simple/galaxy-app/) (requires-python:>=3.7), version: 23.0.3 2024-06-28T12:28:29,601 Skipping link: No binaries permitted for galaxy-app: https://files.pythonhosted.org/packages/08/19/3c5252502bf8984448c6713825aea0efb9ba4de747eb073568b2679afc94/galaxy_app-23.0.3-py3-none-any.whl (from https://pypi.org/simple/galaxy-app/) (requires-python:>=3.7) 2024-06-28T12:28:29,602 Found link https://files.pythonhosted.org/packages/7b/69/05dfb348db46268dfd2096cea8f42d37bb0d5f6e55202f684607fc4fa1e2/galaxy-app-23.0.4.tar.gz (from https://pypi.org/simple/galaxy-app/) (requires-python:>=3.7), version: 23.0.4 2024-06-28T12:28:29,602 Skipping link: No binaries permitted for galaxy-app: https://files.pythonhosted.org/packages/12/d3/cd3e8e4b280236df34705ac5745d6cb657593b9b6064e6980df863dbfba0/galaxy_app-23.0.4-py3-none-any.whl (from https://pypi.org/simple/galaxy-app/) (requires-python:>=3.7) 2024-06-28T12:28:29,603 Found link https://files.pythonhosted.org/packages/9f/d5/eca55f6fa4a9147f5b72dd6a593a0c36280f2bc3a5bf95d95cb4112f92a8/galaxy-app-23.0.5.tar.gz (from https://pypi.org/simple/galaxy-app/) (requires-python:>=3.7), version: 23.0.5 2024-06-28T12:28:29,603 Skipping link: No binaries permitted for galaxy-app: https://files.pythonhosted.org/packages/d4/26/d168ceb65d4c9d6ef67c88f061d8eb88d7e845a2f10f10b7d1270d5acb37/galaxy_app-23.0.5-py3-none-any.whl (from https://pypi.org/simple/galaxy-app/) (requires-python:>=3.7) 2024-06-28T12:28:29,604 Found link https://files.pythonhosted.org/packages/86/9e/41165df0dabc7ff036d7a2daa00fe555770e7dbfb1e208f2847d756be48c/galaxy-app-23.0.6.tar.gz (from https://pypi.org/simple/galaxy-app/) (requires-python:>=3.7), version: 23.0.6 2024-06-28T12:28:29,605 Skipping link: No binaries permitted for galaxy-app: https://files.pythonhosted.org/packages/e8/73/abf8595c6097c3b6ffbe95cd4cdbf404a5cf6ad7b292545cc4d1cb87d4a0/galaxy_app-23.0.6-py3-none-any.whl (from https://pypi.org/simple/galaxy-app/) (requires-python:>=3.7) 2024-06-28T12:28:29,606 Found link https://files.pythonhosted.org/packages/41/07/083718b816053a9f97e5e678ac9bed14b31d3a224026170e58be13f37fba/galaxy-app-23.1.dev0.tar.gz (from https://pypi.org/simple/galaxy-app/) (requires-python:>=3.7), version: 23.1.dev0 2024-06-28T12:28:29,607 Skipping link: No binaries permitted for galaxy-app: https://files.pythonhosted.org/packages/7a/89/50a4575db66b638bee6f241f902f556eaa27855d7f0fd3323551bdb09f5d/galaxy_app-23.1.dev0-py3-none-any.whl (from https://pypi.org/simple/galaxy-app/) (requires-python:>=3.7) 2024-06-28T12:28:29,608 Found link https://files.pythonhosted.org/packages/96/67/be959ad3f838e23eec1821ba494202846a79ed3add7f603feab6a46e21f3/galaxy-app-23.1.1.tar.gz (from https://pypi.org/simple/galaxy-app/) (requires-python:>=3.7), version: 23.1.1 2024-06-28T12:28:29,608 Skipping link: No binaries permitted for galaxy-app: https://files.pythonhosted.org/packages/c8/f7/a84fe8d48fb96f5e96981ca3f60491f856efa4f2463722fa75ad8dcec7a7/galaxy_app-23.1.1-py3-none-any.whl (from https://pypi.org/simple/galaxy-app/) (requires-python:>=3.7) 2024-06-28T12:28:29,609 Found link https://files.pythonhosted.org/packages/ad/a6/798ae0b3aa469f382a3b4350fc394ebe60559177717140e48f97ae81d4a3/galaxy-app-23.1.2.tar.gz (from https://pypi.org/simple/galaxy-app/) (requires-python:>=3.7), version: 23.1.2 2024-06-28T12:28:29,610 Skipping link: No binaries permitted for galaxy-app: https://files.pythonhosted.org/packages/54/ef/8264cbce6eca0cd434001d62c838cd4798aa478a6af7879b83299c28193d/galaxy_app-23.1.2-py3-none-any.whl (from https://pypi.org/simple/galaxy-app/) (requires-python:>=3.7) 2024-06-28T12:28:29,611 Found link https://files.pythonhosted.org/packages/26/ba/0995031cda92688ec41ab4ad0cc11b148fd5caecf21e414928464bea82f8/galaxy-app-23.1.3.tar.gz (from https://pypi.org/simple/galaxy-app/) (requires-python:>=3.7), version: 23.1.3 2024-06-28T12:28:29,611 Skipping link: No binaries permitted for galaxy-app: https://files.pythonhosted.org/packages/03/0f/747509841f1baad002247bb2956344ce1ebb9703ab941c149f5456b32c31/galaxy_app-23.1.3-py3-none-any.whl (from https://pypi.org/simple/galaxy-app/) (requires-python:>=3.7) 2024-06-28T12:28:29,613 Found link https://files.pythonhosted.org/packages/de/63/8be8d20cf1c913da72f9b69af53b711dccc0a998718c2abf93349bdf5301/galaxy-app-23.1.4.tar.gz (from https://pypi.org/simple/galaxy-app/) (requires-python:>=3.7), version: 23.1.4 2024-06-28T12:28:29,613 Skipping link: No binaries permitted for galaxy-app: https://files.pythonhosted.org/packages/60/97/43d48dc8d2d332faab8a4439b68c7cbbd528f7b9d48c8a0092d60cc5124d/galaxy_app-23.1.4-py3-none-any.whl (from https://pypi.org/simple/galaxy-app/) (requires-python:>=3.7) 2024-06-28T12:28:29,614 Found link https://files.pythonhosted.org/packages/2f/6c/b024d7c86132a8926709338c49bef02ac75821d997e60030744cf4e65ed0/galaxy-app-23.2.1.tar.gz (from https://pypi.org/simple/galaxy-app/) (requires-python:>=3.7), version: 23.2.1 2024-06-28T12:28:29,615 Skipping link: No binaries permitted for galaxy-app: https://files.pythonhosted.org/packages/b9/89/c6d435aa81c1e8bfc9a11ffe2ce1212d1f7251be748aa684ad150a337b25/galaxy_app-23.2.1-py3-none-any.whl (from https://pypi.org/simple/galaxy-app/) (requires-python:>=3.7) 2024-06-28T12:28:29,615 Found link https://files.pythonhosted.org/packages/10/8a/8722621711150c5522028ae4f5ecd1a7e12cd7e430a6b9cf2f8f4d1ff409/galaxy-app-24.0.0.tar.gz (from https://pypi.org/simple/galaxy-app/) (requires-python:>=3.8), version: 24.0.0 2024-06-28T12:28:29,616 Skipping link: No binaries permitted for galaxy-app: https://files.pythonhosted.org/packages/23/72/37370b092b6ea34491efdb854990cba6068b4a3b6eef26947c2ab1274f69/galaxy_app-24.0.0-py3-none-any.whl (from https://pypi.org/simple/galaxy-app/) (requires-python:>=3.8) 2024-06-28T12:28:29,617 Skipping link: No binaries permitted for galaxy-app: https://files.pythonhosted.org/packages/8a/2b/e66673f317e13ca426074d88f5180a2836f281f3c292275db2fdb44d15fe/galaxy_app-24.0.1-py3-none-any.whl (from https://pypi.org/simple/galaxy-app/) (requires-python:>=3.8) 2024-06-28T12:28:29,618 Found link https://files.pythonhosted.org/packages/1b/a9/861c3fdb557700065a00872db1752b8f4797de95325630397f96c99146bd/galaxy_app-24.0.1.tar.gz (from https://pypi.org/simple/galaxy-app/) (requires-python:>=3.8), version: 24.0.1 2024-06-28T12:28:29,619 Skipping link: No binaries permitted for galaxy-app: https://files.pythonhosted.org/packages/0a/a5/2c0d3d616a72e3ee35b36a3aa9d449b8c174fc181a993c01d4078e6443b1/galaxy_app-24.0.2-py3-none-any.whl (from https://pypi.org/simple/galaxy-app/) (requires-python:>=3.8) 2024-06-28T12:28:29,620 Found link https://files.pythonhosted.org/packages/31/53/8f944700770dbafae351efe5557d476c3ad478f8dddb0cf8c0e5d0269bd8/galaxy_app-24.0.2.tar.gz (from https://pypi.org/simple/galaxy-app/) (requires-python:>=3.8), version: 24.0.2 2024-06-28T12:28:29,620 Skipping link: No binaries permitted for galaxy-app: https://files.pythonhosted.org/packages/e7/44/e5c37f7ebac240ff67705b771890f8741a1f3ab6d6096e4413f44c690230/galaxy_app-24.0.3-py3-none-any.whl (from https://pypi.org/simple/galaxy-app/) (requires-python:>=3.8) 2024-06-28T12:28:29,621 Found link https://files.pythonhosted.org/packages/b6/50/b2598fe6756e78bbb2d4d816b17700ebbda5a18099a99676d7a882b23973/galaxy_app-24.0.3.tar.gz (from https://pypi.org/simple/galaxy-app/) (requires-python:>=3.8), version: 24.0.3 2024-06-28T12:28:29,622 Fetching project page and analyzing links: https://www.piwheels.org/simple/galaxy-app/ 2024-06-28T12:28:29,623 Getting page https://www.piwheels.org/simple/galaxy-app/ 2024-06-28T12:28:29,624 Found index url https://www.piwheels.org/simple/ 2024-06-28T12:28:29,788 Fetched page https://www.piwheels.org/simple/galaxy-app/ as text/html 2024-06-28T12:28:29,794 Skipping link: No binaries permitted for galaxy-app: https://www.piwheels.org/simple/galaxy-app/galaxy_app-24.0.2-py3-none-any.whl#sha256=c42cadb7f2e6473f37ca6a906c35ab3eccaa056126134a7519406842ef57b63f (from https://www.piwheels.org/simple/galaxy-app/) (requires-python:>=3.8) 2024-06-28T12:28:29,795 Skipping link: No binaries permitted for galaxy-app: https://www.piwheels.org/simple/galaxy-app/galaxy_app-24.0.1-py3-none-any.whl#sha256=a203d2b0535783470077aeef294bcf5ef0664ea223202a97c46f96899a1d723b (from https://www.piwheels.org/simple/galaxy-app/) (requires-python:>=3.8) 2024-06-28T12:28:29,796 Skipping link: No binaries permitted for galaxy-app: https://www.piwheels.org/simple/galaxy-app/galaxy_app-24.0.0-py3-none-any.whl#sha256=2b9d3bce166e31abb2ffc8c574fc111268b8f1a67dea6324c88de325d8b110d4 (from https://www.piwheels.org/simple/galaxy-app/) (requires-python:>=3.8) 2024-06-28T12:28:29,796 Skipping link: No binaries permitted for galaxy-app: https://www.piwheels.org/simple/galaxy-app/galaxy_app-23.2.1-py3-none-any.whl#sha256=e37a8c0551dded98be57102c74e99152b15aa0369a4b28287c95e0b0e1b0c7f9 (from https://www.piwheels.org/simple/galaxy-app/) (requires-python:>=3.7) 2024-06-28T12:28:29,797 Skipping link: No binaries permitted for galaxy-app: https://www.piwheels.org/simple/galaxy-app/galaxy_app-23.1.4-py3-none-any.whl#sha256=a0d156aebf5163d1c632ec4c512d86f60cd8848ff63bfdee5e72f0b2b1ea9942 (from https://www.piwheels.org/simple/galaxy-app/) (requires-python:>=3.7) 2024-06-28T12:28:29,797 Skipping link: No binaries permitted for galaxy-app: https://www.piwheels.org/simple/galaxy-app/galaxy_app-23.1.3-py3-none-any.whl#sha256=31efbe6b15793cf934e6d3fa0acf8fa040a1110373f2af602c1384f2fddc61a5 (from https://www.piwheels.org/simple/galaxy-app/) (requires-python:>=3.7) 2024-06-28T12:28:29,798 Skipping link: No binaries permitted for galaxy-app: https://www.piwheels.org/simple/galaxy-app/galaxy_app-23.1.2-py3-none-any.whl#sha256=af60799c6e1c91da02a7b4d1dc70fa1285c49cbb474f15dad9f74fc50ef0d214 (from https://www.piwheels.org/simple/galaxy-app/) (requires-python:>=3.7) 2024-06-28T12:28:29,798 Skipping link: No binaries permitted for galaxy-app: https://www.piwheels.org/simple/galaxy-app/galaxy_app-23.1.1-py3-none-any.whl#sha256=c2a889aa873a367630a84277ea40ae425c8ccfb9d29770e60ed120e11f16287b (from https://www.piwheels.org/simple/galaxy-app/) (requires-python:>=3.7) 2024-06-28T12:28:29,799 Skipping link: No binaries permitted for galaxy-app: https://www.piwheels.org/simple/galaxy-app/galaxy_app-23.1.dev0-py3-none-any.whl#sha256=c9198ae7cb3065b124471a6e7c9b40207d05b9dd860896249bd107558b62eabd (from https://www.piwheels.org/simple/galaxy-app/) (requires-python:>=3.7) 2024-06-28T12:28:29,799 Skipping link: No binaries permitted for galaxy-app: https://www.piwheels.org/simple/galaxy-app/galaxy_app-23.0.6-py3-none-any.whl#sha256=2c529481de193d71a8c059551d9713d602fa4e7817856a393fc657711fd26a80 (from https://www.piwheels.org/simple/galaxy-app/) (requires-python:>=3.7) 2024-06-28T12:28:29,800 Skipping link: No binaries permitted for galaxy-app: https://www.piwheels.org/simple/galaxy-app/galaxy_app-23.0.5-py3-none-any.whl#sha256=1e9b1a29eee6bf66924f5da034af625e193ea4f7fe6585b2fee5379f94add213 (from https://www.piwheels.org/simple/galaxy-app/) (requires-python:>=3.7) 2024-06-28T12:28:29,800 Skipping link: No binaries permitted for galaxy-app: https://www.piwheels.org/simple/galaxy-app/galaxy_app-23.0.4-py3-none-any.whl#sha256=0645d80a13b5594f7067c91e672962bdc25e46a38081f18d11d0aeaa34f8ee3d (from https://www.piwheels.org/simple/galaxy-app/) (requires-python:>=3.7) 2024-06-28T12:28:29,801 Skipping link: No binaries permitted for galaxy-app: https://www.piwheels.org/simple/galaxy-app/galaxy_app-23.0.3-py3-none-any.whl#sha256=a65f158d80ecabd0d612e24816a2e517007a19648a67381bdee48058c8236014 (from https://www.piwheels.org/simple/galaxy-app/) (requires-python:>=3.7) 2024-06-28T12:28:29,801 Skipping link: No binaries permitted for galaxy-app: https://www.piwheels.org/simple/galaxy-app/galaxy_app-23.0.2-py3-none-any.whl#sha256=09f32912adb5c90cdbbcc5e2f3168a54501cb7595d207b2e660e4235e7e46067 (from https://www.piwheels.org/simple/galaxy-app/) (requires-python:>=3.7) 2024-06-28T12:28:29,802 Skipping link: No binaries permitted for galaxy-app: https://www.piwheels.org/simple/galaxy-app/galaxy_app-23.0.1-py3-none-any.whl#sha256=e16745e48d15e5e5cb83991066b1e2dcb2333d49dac992e2601b9fc6af8f45a4 (from https://www.piwheels.org/simple/galaxy-app/) (requires-python:>=3.7) 2024-06-28T12:28:29,803 Skipping link: No binaries permitted for galaxy-app: https://www.piwheels.org/simple/galaxy-app/galaxy_app-20.9.0-py2.py3-none-any.whl#sha256=d6b3897be5b3c63e0c7f914f9ce7df087cb3df8fa6d55b1475c7d933cdb09a29 (from https://www.piwheels.org/simple/galaxy-app/) 2024-06-28T12:28:29,803 Skipping link: No binaries permitted for galaxy-app: https://www.piwheels.org/simple/galaxy-app/galaxy_app-20.5.0-py2.py3-none-any.whl#sha256=2aa533c8296a5843fd06ce934c7c817845b12286e6b62fb94bb685f0259d9ad0 (from https://www.piwheels.org/simple/galaxy-app/) 2024-06-28T12:28:29,804 Skipping link: not a file: https://www.piwheels.org/simple/galaxy-app/ 2024-06-28T12:28:29,804 Skipping link: not a file: https://pypi.org/simple/galaxy-app/ 2024-06-28T12:28:29,827 Given no hashes to check 1 links for project 'galaxy-app': discarding no candidates 2024-06-28T12:28:29,847 Collecting galaxy-app==24.0.3 2024-06-28T12:28:29,849 Created temporary directory: /tmp/pip-unpack-_rca3tcv 2024-06-28T12:28:30,069 Downloading galaxy_app-24.0.3.tar.gz (1.2 MB) 2024-06-28T12:28:31,526 Added galaxy-app==24.0.3 from https://files.pythonhosted.org/packages/b6/50/b2598fe6756e78bbb2d4d816b17700ebbda5a18099a99676d7a882b23973/galaxy_app-24.0.3.tar.gz to build tracker '/tmp/pip-build-tracker-u7p1rp2x' 2024-06-28T12:28:31,529 Created temporary directory: /tmp/pip-build-env-0_gg1da7 2024-06-28T12:28:31,533 Installing build dependencies: started 2024-06-28T12:28:31,535 Running command pip subprocess to install build dependencies 2024-06-28T12:28:32,698 Using pip 24.0 from /usr/local/lib/python3.11/dist-packages/pip (python 3.11) 2024-06-28T12:28:33,205 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2024-06-28T12:28:34,667 Collecting setuptools 2024-06-28T12:28:34,681 Using cached https://www.piwheels.org/simple/setuptools/setuptools-70.1.1-py3-none-any.whl (883 kB) 2024-06-28T12:28:37,336 Installing collected packages: setuptools 2024-06-28T12:28:39,729 Successfully installed setuptools-70.1.1 2024-06-28T12:28:40,036 [notice] A new release of pip is available: 24.0 -> 24.1 2024-06-28T12:28:40,037 [notice] To update, run: python3 -m pip install --upgrade pip 2024-06-28T12:28:40,303 Installing build dependencies: finished with status 'done' 2024-06-28T12:28:40,307 Getting requirements to build wheel: started 2024-06-28T12:28:40,308 Running command Getting requirements to build wheel 2024-06-28T12:28:41,004 running egg_info 2024-06-28T12:28:41,008 writing galaxy_app.egg-info/PKG-INFO 2024-06-28T12:28:41,015 writing dependency_links to galaxy_app.egg-info/dependency_links.txt 2024-06-28T12:28:41,016 writing entry points to galaxy_app.egg-info/entry_points.txt 2024-06-28T12:28:41,019 writing requirements to galaxy_app.egg-info/requires.txt 2024-06-28T12:28:41,020 writing top-level names to galaxy_app.egg-info/top_level.txt 2024-06-28T12:28:41,096 reading manifest file 'galaxy_app.egg-info/SOURCES.txt' 2024-06-28T12:28:41,144 reading manifest template 'MANIFEST.in' 2024-06-28T12:28:41,624 adding license file 'LICENSE' 2024-06-28T12:28:41,652 writing manifest file 'galaxy_app.egg-info/SOURCES.txt' 2024-06-28T12:28:41,738 Getting requirements to build wheel: finished with status 'done' 2024-06-28T12:28:41,742 Created temporary directory: /tmp/pip-modern-metadata-meiao5gr 2024-06-28T12:28:41,744 Preparing metadata (pyproject.toml): started 2024-06-28T12:28:41,745 Running command Preparing metadata (pyproject.toml) 2024-06-28T12:28:42,333 running dist_info 2024-06-28T12:28:42,337 creating /tmp/pip-modern-metadata-meiao5gr/galaxy_app.egg-info 2024-06-28T12:28:42,341 writing /tmp/pip-modern-metadata-meiao5gr/galaxy_app.egg-info/PKG-INFO 2024-06-28T12:28:42,348 writing dependency_links to /tmp/pip-modern-metadata-meiao5gr/galaxy_app.egg-info/dependency_links.txt 2024-06-28T12:28:42,350 writing entry points to /tmp/pip-modern-metadata-meiao5gr/galaxy_app.egg-info/entry_points.txt 2024-06-28T12:28:42,352 writing requirements to /tmp/pip-modern-metadata-meiao5gr/galaxy_app.egg-info/requires.txt 2024-06-28T12:28:42,353 writing top-level names to /tmp/pip-modern-metadata-meiao5gr/galaxy_app.egg-info/top_level.txt 2024-06-28T12:28:42,354 writing manifest file '/tmp/pip-modern-metadata-meiao5gr/galaxy_app.egg-info/SOURCES.txt' 2024-06-28T12:28:42,420 reading manifest file '/tmp/pip-modern-metadata-meiao5gr/galaxy_app.egg-info/SOURCES.txt' 2024-06-28T12:28:42,422 reading manifest template 'MANIFEST.in' 2024-06-28T12:28:42,918 adding license file 'LICENSE' 2024-06-28T12:28:42,938 writing manifest file '/tmp/pip-modern-metadata-meiao5gr/galaxy_app.egg-info/SOURCES.txt' 2024-06-28T12:28:42,940 creating '/tmp/pip-modern-metadata-meiao5gr/galaxy_app-24.0.3.dist-info' 2024-06-28T12:28:43,087 Preparing metadata (pyproject.toml): finished with status 'done' 2024-06-28T12:28:43,096 Source in /tmp/pip-wheel-lxoeub7x/galaxy-app_629f00c08f2a4a6bba8416ded7b03336 has version 24.0.3, which satisfies requirement galaxy-app==24.0.3 from https://files.pythonhosted.org/packages/b6/50/b2598fe6756e78bbb2d4d816b17700ebbda5a18099a99676d7a882b23973/galaxy_app-24.0.3.tar.gz 2024-06-28T12:28:43,097 Removed galaxy-app==24.0.3 from https://files.pythonhosted.org/packages/b6/50/b2598fe6756e78bbb2d4d816b17700ebbda5a18099a99676d7a882b23973/galaxy_app-24.0.3.tar.gz from build tracker '/tmp/pip-build-tracker-u7p1rp2x' 2024-06-28T12:28:43,110 Created temporary directory: /tmp/pip-unpack-cfm_s8ht 2024-06-28T12:28:43,111 Created temporary directory: /tmp/pip-unpack-p1e8jb__ 2024-06-28T12:28:43,162 Building wheels for collected packages: galaxy-app 2024-06-28T12:28:43,166 Created temporary directory: /tmp/pip-wheel-4zxps6bf 2024-06-28T12:28:43,166 Destination directory: /tmp/pip-wheel-4zxps6bf 2024-06-28T12:28:43,169 Building wheel for galaxy-app (pyproject.toml): started 2024-06-28T12:28:43,170 Running command Building wheel for galaxy-app (pyproject.toml) 2024-06-28T12:28:43,738 running bdist_wheel 2024-06-28T12:28:43,777 running build 2024-06-28T12:28:43,778 running build_py 2024-06-28T12:28:43,785 creating build 2024-06-28T12:28:43,786 creating build/lib 2024-06-28T12:28:43,787 creating build/lib/galaxy 2024-06-28T12:28:43,788 copying galaxy/structured_app.py -> build/lib/galaxy 2024-06-28T12:28:43,790 copying galaxy/queues.py -> build/lib/galaxy 2024-06-28T12:28:43,792 copying galaxy/di.py -> build/lib/galaxy 2024-06-28T12:28:43,794 copying galaxy/main_config.py -> build/lib/galaxy 2024-06-28T12:28:43,796 copying galaxy/__init__.py -> build/lib/galaxy 2024-06-28T12:28:43,797 copying galaxy/queue_worker.py -> build/lib/galaxy 2024-06-28T12:28:43,799 copying galaxy/config_watchers.py -> build/lib/galaxy 2024-06-28T12:28:43,802 copying galaxy/main.py -> build/lib/galaxy 2024-06-28T12:28:43,804 copying galaxy/app.py -> build/lib/galaxy 2024-06-28T12:28:43,808 creating build/lib/galaxy_ext 2024-06-28T12:28:43,808 copying galaxy_ext/__init__.py -> build/lib/galaxy_ext 2024-06-28T12:28:43,811 creating build/lib/tool_shed_client 2024-06-28T12:28:43,812 copying tool_shed_client/trs_util.py -> build/lib/tool_shed_client 2024-06-28T12:28:43,813 copying tool_shed_client/__init__.py -> build/lib/tool_shed_client 2024-06-28T12:28:43,815 creating build/lib/galaxy/webhooks 2024-06-28T12:28:43,816 copying galaxy/webhooks/__init__.py -> build/lib/galaxy/webhooks 2024-06-28T12:28:43,819 creating build/lib/galaxy/celery 2024-06-28T12:28:43,820 copying galaxy/celery/base_task.py -> build/lib/galaxy/celery 2024-06-28T12:28:43,822 copying galaxy/celery/tasks.py -> build/lib/galaxy/celery 2024-06-28T12:28:43,825 copying galaxy/celery/__init__.py -> build/lib/galaxy/celery 2024-06-28T12:28:43,827 copying galaxy/celery/_serialization.py -> build/lib/galaxy/celery 2024-06-28T12:28:43,829 creating build/lib/galaxy/actions 2024-06-28T12:28:43,830 copying galaxy/actions/__init__.py -> build/lib/galaxy/actions 2024-06-28T12:28:43,831 copying galaxy/actions/library.py -> build/lib/galaxy/actions 2024-06-28T12:28:43,834 creating build/lib/galaxy/authnz 2024-06-28T12:28:43,835 copying galaxy/authnz/util.py -> build/lib/galaxy/authnz 2024-06-28T12:28:43,837 copying galaxy/authnz/custos_authnz.py -> build/lib/galaxy/authnz 2024-06-28T12:28:43,839 copying galaxy/authnz/managers.py -> build/lib/galaxy/authnz 2024-06-28T12:28:43,841 copying galaxy/authnz/__init__.py -> build/lib/galaxy/authnz 2024-06-28T12:28:43,843 copying galaxy/authnz/psa_authnz.py -> build/lib/galaxy/authnz 2024-06-28T12:28:43,846 creating build/lib/galaxy/work 2024-06-28T12:28:43,847 copying galaxy/work/context.py -> build/lib/galaxy/work 2024-06-28T12:28:43,849 copying galaxy/work/__init__.py -> build/lib/galaxy/work 2024-06-28T12:28:43,852 creating build/lib/galaxy/managers 2024-06-28T12:28:43,853 copying galaxy/managers/quotas.py -> build/lib/galaxy/managers 2024-06-28T12:28:43,855 copying galaxy/managers/markdown_parse.py -> build/lib/galaxy/managers 2024-06-28T12:28:43,857 copying galaxy/managers/pages.py -> build/lib/galaxy/managers 2024-06-28T12:28:43,860 copying galaxy/managers/libraries.py -> build/lib/galaxy/managers 2024-06-28T12:28:43,862 copying galaxy/managers/jobs.py -> build/lib/galaxy/managers 2024-06-28T12:28:43,865 copying galaxy/managers/collections.py -> build/lib/galaxy/managers 2024-06-28T12:28:43,869 copying galaxy/managers/api_keys.py -> build/lib/galaxy/managers 2024-06-28T12:28:43,870 copying galaxy/managers/deletable.py -> build/lib/galaxy/managers 2024-06-28T12:28:43,872 copying galaxy/managers/ratable.py -> build/lib/galaxy/managers 2024-06-28T12:28:43,874 copying galaxy/managers/tool_data.py -> build/lib/galaxy/managers 2024-06-28T12:28:43,876 copying galaxy/managers/users.py -> build/lib/galaxy/managers 2024-06-28T12:28:43,879 copying galaxy/managers/configuration.py -> build/lib/galaxy/managers 2024-06-28T12:28:43,881 copying galaxy/managers/workflows.py -> build/lib/galaxy/managers 2024-06-28T12:28:43,886 copying galaxy/managers/item_tags.py -> build/lib/galaxy/managers 2024-06-28T12:28:43,887 copying galaxy/managers/base.py -> build/lib/galaxy/managers 2024-06-28T12:28:43,890 copying galaxy/managers/interactivetool.py -> build/lib/galaxy/managers 2024-06-28T12:28:43,893 copying galaxy/managers/dbkeys.py -> build/lib/galaxy/managers 2024-06-28T12:28:43,895 copying galaxy/managers/tasks.py -> build/lib/galaxy/managers 2024-06-28T12:28:43,896 copying galaxy/managers/executables.py -> build/lib/galaxy/managers 2024-06-28T12:28:43,898 copying galaxy/managers/collections_util.py -> build/lib/galaxy/managers 2024-06-28T12:28:43,900 copying galaxy/managers/forms.py -> build/lib/galaxy/managers 2024-06-28T12:28:43,902 copying galaxy/managers/secured.py -> build/lib/galaxy/managers 2024-06-28T12:28:43,904 copying galaxy/managers/annotatable.py -> build/lib/galaxy/managers 2024-06-28T12:28:43,906 copying galaxy/managers/markdown_util.py -> build/lib/galaxy/managers 2024-06-28T12:28:43,909 copying galaxy/managers/datatypes.py -> build/lib/galaxy/managers 2024-06-28T12:28:43,911 copying galaxy/managers/group_roles.py -> build/lib/galaxy/managers 2024-06-28T12:28:43,913 copying galaxy/managers/visualizations.py -> build/lib/galaxy/managers 2024-06-28T12:28:43,914 copying galaxy/managers/metrics.py -> build/lib/galaxy/managers 2024-06-28T12:28:43,917 copying galaxy/managers/sharable.py -> build/lib/galaxy/managers 2024-06-28T12:28:43,919 copying galaxy/managers/taggable.py -> build/lib/galaxy/managers 2024-06-28T12:28:43,921 copying galaxy/managers/folders.py -> build/lib/galaxy/managers 2024-06-28T12:28:43,923 copying galaxy/managers/context.py -> build/lib/galaxy/managers 2024-06-28T12:28:43,925 copying galaxy/managers/rbac_secured.py -> build/lib/galaxy/managers 2024-06-28T12:28:43,928 copying galaxy/managers/roles.py -> build/lib/galaxy/managers 2024-06-28T12:28:43,930 copying galaxy/managers/remote_files.py -> build/lib/galaxy/managers 2024-06-28T12:28:43,932 copying galaxy/managers/session.py -> build/lib/galaxy/managers 2024-06-28T12:28:43,933 copying galaxy/managers/__init__.py -> build/lib/galaxy/managers 2024-06-28T12:28:43,935 copying galaxy/managers/group_users.py -> build/lib/galaxy/managers 2024-06-28T12:28:43,937 copying galaxy/managers/lddas.py -> build/lib/galaxy/managers 2024-06-28T12:28:43,938 copying galaxy/managers/datasets.py -> build/lib/galaxy/managers 2024-06-28T12:28:43,941 copying galaxy/managers/export_tracker.py -> build/lib/galaxy/managers 2024-06-28T12:28:43,943 copying galaxy/managers/groups.py -> build/lib/galaxy/managers 2024-06-28T12:28:43,945 copying galaxy/managers/cloudauthzs.py -> build/lib/galaxy/managers 2024-06-28T12:28:43,947 copying galaxy/managers/tools.py -> build/lib/galaxy/managers 2024-06-28T12:28:43,949 copying galaxy/managers/histories.py -> build/lib/galaxy/managers 2024-06-28T12:28:43,952 copying galaxy/managers/licenses.py -> build/lib/galaxy/managers 2024-06-28T12:28:43,953 copying galaxy/managers/library_datasets.py -> build/lib/galaxy/managers 2024-06-28T12:28:43,955 copying galaxy/managers/hdcas.py -> build/lib/galaxy/managers 2024-06-28T12:28:43,957 copying galaxy/managers/cloud.py -> build/lib/galaxy/managers 2024-06-28T12:28:43,960 copying galaxy/managers/hdas.py -> build/lib/galaxy/managers 2024-06-28T12:28:43,963 copying galaxy/managers/tags.py -> build/lib/galaxy/managers 2024-06-28T12:28:43,964 copying galaxy/managers/history_contents.py -> build/lib/galaxy/managers 2024-06-28T12:28:43,967 copying galaxy/managers/job_connections.py -> build/lib/galaxy/managers 2024-06-28T12:28:43,969 copying galaxy/managers/notification.py -> build/lib/galaxy/managers 2024-06-28T12:28:43,972 copying galaxy/managers/model_stores.py -> build/lib/galaxy/managers 2024-06-28T12:28:43,974 copying galaxy/managers/citations.py -> build/lib/galaxy/managers 2024-06-28T12:28:43,977 copying galaxy/managers/display_applications.py -> build/lib/galaxy/managers 2024-06-28T12:28:43,978 copying galaxy/managers/genomes.py -> build/lib/galaxy/managers 2024-06-28T12:28:43,981 creating build/lib/galaxy/tools 2024-06-28T12:28:43,982 copying galaxy/tools/wrappers.py -> build/lib/galaxy/tools 2024-06-28T12:28:43,985 copying galaxy/tools/execute.py -> build/lib/galaxy/tools 2024-06-28T12:28:43,988 copying galaxy/tools/exception_handling.py -> build/lib/galaxy/tools 2024-06-28T12:28:43,989 copying galaxy/tools/cache.py -> build/lib/galaxy/tools 2024-06-28T12:28:43,992 copying galaxy/tools/remote_tool_eval.py -> build/lib/galaxy/tools 2024-06-28T12:28:43,994 copying galaxy/tools/data_fetch.py -> build/lib/galaxy/tools 2024-06-28T12:28:43,996 copying galaxy/tools/special_tools.py -> build/lib/galaxy/tools 2024-06-28T12:28:43,998 copying galaxy/tools/__init__.py -> build/lib/galaxy/tools 2024-06-28T12:28:44,003 copying galaxy/tools/biotools.py -> build/lib/galaxy/tools 2024-06-28T12:28:44,005 copying galaxy/tools/recommendations.py -> build/lib/galaxy/tools 2024-06-28T12:28:44,007 copying galaxy/tools/evaluation.py -> build/lib/galaxy/tools 2024-06-28T12:28:44,010 copying galaxy/tools/test.py -> build/lib/galaxy/tools 2024-06-28T12:28:44,013 copying galaxy/tools/errors.py -> build/lib/galaxy/tools 2024-06-28T12:28:44,015 copying galaxy/tools/repositories.py -> build/lib/galaxy/tools 2024-06-28T12:28:44,017 creating build/lib/galaxy/dependencies 2024-06-28T12:28:44,018 copying galaxy/dependencies/__init__.py -> build/lib/galaxy/dependencies 2024-06-28T12:28:44,021 creating build/lib/galaxy/jobs 2024-06-28T12:28:44,022 copying galaxy/jobs/dynamic_tool_destination.py -> build/lib/galaxy/jobs 2024-06-28T12:28:44,026 copying galaxy/jobs/stock_rules.py -> build/lib/galaxy/jobs 2024-06-28T12:28:44,028 copying galaxy/jobs/command_factory.py -> build/lib/galaxy/jobs 2024-06-28T12:28:44,030 copying galaxy/jobs/rule_helper.py -> build/lib/galaxy/jobs 2024-06-28T12:28:44,032 copying galaxy/jobs/__init__.py -> build/lib/galaxy/jobs 2024-06-28T12:28:44,037 copying galaxy/jobs/manager.py -> build/lib/galaxy/jobs 2024-06-28T12:28:44,039 copying galaxy/jobs/handler.py -> build/lib/galaxy/jobs 2024-06-28T12:28:44,042 copying galaxy/jobs/mapper.py -> build/lib/galaxy/jobs 2024-06-28T12:28:44,044 creating build/lib/galaxy/carbon_emissions 2024-06-28T12:28:44,045 copying galaxy/carbon_emissions/__init__.py -> build/lib/galaxy/carbon_emissions 2024-06-28T12:28:44,047 creating build/lib/galaxy/short_term_storage 2024-06-28T12:28:44,048 copying galaxy/short_term_storage/__init__.py -> build/lib/galaxy/short_term_storage 2024-06-28T12:28:44,051 creating build/lib/galaxy/app_unittest_utils 2024-06-28T12:28:44,052 copying galaxy/app_unittest_utils/galaxy_mock.py -> build/lib/galaxy/app_unittest_utils 2024-06-28T12:28:44,054 copying galaxy/app_unittest_utils/tools_support.py -> build/lib/galaxy/app_unittest_utils 2024-06-28T12:28:44,056 copying galaxy/app_unittest_utils/__init__.py -> build/lib/galaxy/app_unittest_utils 2024-06-28T12:28:44,058 copying galaxy/app_unittest_utils/toolbox_support.py -> build/lib/galaxy/app_unittest_utils 2024-06-28T12:28:44,060 creating build/lib/galaxy/visualization 2024-06-28T12:28:44,061 copying galaxy/visualization/__init__.py -> build/lib/galaxy/visualization 2024-06-28T12:28:44,062 copying galaxy/visualization/genomes.py -> build/lib/galaxy/visualization 2024-06-28T12:28:44,065 creating build/lib/galaxy/forms 2024-06-28T12:28:44,066 copying galaxy/forms/forms.py -> build/lib/galaxy/forms 2024-06-28T12:28:44,068 copying galaxy/forms/__init__.py -> build/lib/galaxy/forms 2024-06-28T12:28:44,070 creating build/lib/galaxy/workflow 2024-06-28T12:28:44,071 copying galaxy/workflow/modules.py -> build/lib/galaxy/workflow 2024-06-28T12:28:44,076 copying galaxy/workflow/run.py -> build/lib/galaxy/workflow 2024-06-28T12:28:44,079 copying galaxy/workflow/steps.py -> build/lib/galaxy/workflow 2024-06-28T12:28:44,081 copying galaxy/workflow/run_request.py -> build/lib/galaxy/workflow 2024-06-28T12:28:44,083 copying galaxy/workflow/extract.py -> build/lib/galaxy/workflow 2024-06-28T12:28:44,086 copying galaxy/workflow/__init__.py -> build/lib/galaxy/workflow 2024-06-28T12:28:44,087 copying galaxy/workflow/render.py -> build/lib/galaxy/workflow 2024-06-28T12:28:44,089 copying galaxy/workflow/trs_proxy.py -> build/lib/galaxy/workflow 2024-06-28T12:28:44,091 copying galaxy/workflow/scheduling_manager.py -> build/lib/galaxy/workflow 2024-06-28T12:28:44,094 creating build/lib/galaxy/tool_shed 2024-06-28T12:28:44,095 copying galaxy/tool_shed/cache.py -> build/lib/galaxy/tool_shed 2024-06-28T12:28:44,097 copying galaxy/tool_shed/repository_type.py -> build/lib/galaxy/tool_shed 2024-06-28T12:28:44,099 copying galaxy/tool_shed/__init__.py -> build/lib/galaxy/tool_shed 2024-06-28T12:28:44,100 creating build/lib/galaxy/tools/imp_exp 2024-06-28T12:28:44,101 copying galaxy/tools/imp_exp/export_history.py -> build/lib/galaxy/tools/imp_exp 2024-06-28T12:28:44,103 copying galaxy/tools/imp_exp/unpack_tar_gz_archive.py -> build/lib/galaxy/tools/imp_exp 2024-06-28T12:28:44,105 copying galaxy/tools/imp_exp/__init__.py -> build/lib/galaxy/tools/imp_exp 2024-06-28T12:28:44,108 creating build/lib/galaxy/tools/actions 2024-06-28T12:28:44,109 copying galaxy/tools/actions/history_imp_exp.py -> build/lib/galaxy/tools/actions 2024-06-28T12:28:44,111 copying galaxy/tools/actions/data_source.py -> build/lib/galaxy/tools/actions 2024-06-28T12:28:44,113 copying galaxy/tools/actions/upload.py -> build/lib/galaxy/tools/actions 2024-06-28T12:28:44,115 copying galaxy/tools/actions/metadata.py -> build/lib/galaxy/tools/actions 2024-06-28T12:28:44,118 copying galaxy/tools/actions/__init__.py -> build/lib/galaxy/tools/actions 2024-06-28T12:28:44,121 copying galaxy/tools/actions/upload_common.py -> build/lib/galaxy/tools/actions 2024-06-28T12:28:44,124 copying galaxy/tools/actions/data_manager.py -> build/lib/galaxy/tools/actions 2024-06-28T12:28:44,126 copying galaxy/tools/actions/model_operations.py -> build/lib/galaxy/tools/actions 2024-06-28T12:28:44,128 creating build/lib/galaxy/tools/expressions 2024-06-28T12:28:44,129 copying galaxy/tools/expressions/util.py -> build/lib/galaxy/tools/expressions 2024-06-28T12:28:44,131 copying galaxy/tools/expressions/__init__.py -> build/lib/galaxy/tools/expressions 2024-06-28T12:28:44,132 copying galaxy/tools/expressions/evaluation.py -> build/lib/galaxy/tools/expressions 2024-06-28T12:28:44,134 copying galaxy/tools/expressions/script.py -> build/lib/galaxy/tools/expressions 2024-06-28T12:28:44,136 creating build/lib/galaxy/tools/filters 2024-06-28T12:28:44,137 copying galaxy/tools/filters/__init__.py -> build/lib/galaxy/tools/filters 2024-06-28T12:28:44,139 creating build/lib/galaxy/tools/data_manager 2024-06-28T12:28:44,139 copying galaxy/tools/data_manager/__init__.py -> build/lib/galaxy/tools/data_manager 2024-06-28T12:28:44,141 copying galaxy/tools/data_manager/manager.py -> build/lib/galaxy/tools/data_manager 2024-06-28T12:28:44,144 creating build/lib/galaxy/tools/search 2024-06-28T12:28:44,145 copying galaxy/tools/search/__init__.py -> build/lib/galaxy/tools/search 2024-06-28T12:28:44,148 creating build/lib/galaxy/tools/parameters 2024-06-28T12:28:44,148 copying galaxy/tools/parameters/input_translation.py -> build/lib/galaxy/tools/parameters 2024-06-28T12:28:44,151 copying galaxy/tools/parameters/workflow_utils.py -> build/lib/galaxy/tools/parameters 2024-06-28T12:28:44,152 copying galaxy/tools/parameters/grouping.py -> build/lib/galaxy/tools/parameters 2024-06-28T12:28:44,155 copying galaxy/tools/parameters/wrapped_json.py -> build/lib/galaxy/tools/parameters 2024-06-28T12:28:44,157 copying galaxy/tools/parameters/basic.py -> build/lib/galaxy/tools/parameters 2024-06-28T12:28:44,162 copying galaxy/tools/parameters/wrapped.py -> build/lib/galaxy/tools/parameters 2024-06-28T12:28:44,164 copying galaxy/tools/parameters/validation.py -> build/lib/galaxy/tools/parameters 2024-06-28T12:28:44,166 copying galaxy/tools/parameters/meta.py -> build/lib/galaxy/tools/parameters 2024-06-28T12:28:44,169 copying galaxy/tools/parameters/__init__.py -> build/lib/galaxy/tools/parameters 2024-06-28T12:28:44,171 copying galaxy/tools/parameters/history_query.py -> build/lib/galaxy/tools/parameters 2024-06-28T12:28:44,173 copying galaxy/tools/parameters/dataset_matcher.py -> build/lib/galaxy/tools/parameters 2024-06-28T12:28:44,175 copying galaxy/tools/parameters/sanitize.py -> build/lib/galaxy/tools/parameters 2024-06-28T12:28:44,177 copying galaxy/tools/parameters/cancelable_request.py -> build/lib/galaxy/tools/parameters 2024-06-28T12:28:44,179 copying galaxy/tools/parameters/dynamic_options.py -> build/lib/galaxy/tools/parameters 2024-06-28T12:28:44,182 creating build/lib/galaxy/tools/util 2024-06-28T12:28:44,183 copying galaxy/tools/util/__init__.py -> build/lib/galaxy/tools/util 2024-06-28T12:28:44,185 copying galaxy/tools/util/maf_utilities.py -> build/lib/galaxy/tools/util 2024-06-28T12:28:44,188 creating build/lib/galaxy/tools/error_reports 2024-06-28T12:28:44,189 copying galaxy/tools/error_reports/__init__.py -> build/lib/galaxy/tools/error_reports 2024-06-28T12:28:44,191 creating build/lib/galaxy/tools/data 2024-06-28T12:28:44,192 copying galaxy/tools/data/__init__.py -> build/lib/galaxy/tools/data 2024-06-28T12:28:44,195 creating build/lib/galaxy/tools/util/galaxyops 2024-06-28T12:28:44,196 copying galaxy/tools/util/galaxyops/__init__.py -> build/lib/galaxy/tools/util/galaxyops 2024-06-28T12:28:44,199 creating build/lib/galaxy/tools/error_reports/plugins 2024-06-28T12:28:44,200 copying galaxy/tools/error_reports/plugins/base_git.py -> build/lib/galaxy/tools/error_reports/plugins 2024-06-28T12:28:44,202 copying galaxy/tools/error_reports/plugins/sentry.py -> build/lib/galaxy/tools/error_reports/plugins 2024-06-28T12:28:44,204 copying galaxy/tools/error_reports/plugins/gitlab.py -> build/lib/galaxy/tools/error_reports/plugins 2024-06-28T12:28:44,206 copying galaxy/tools/error_reports/plugins/github.py -> build/lib/galaxy/tools/error_reports/plugins 2024-06-28T12:28:44,208 copying galaxy/tools/error_reports/plugins/email.py -> build/lib/galaxy/tools/error_reports/plugins 2024-06-28T12:28:44,210 copying galaxy/tools/error_reports/plugins/__init__.py -> build/lib/galaxy/tools/error_reports/plugins 2024-06-28T12:28:44,211 copying galaxy/tools/error_reports/plugins/json.py -> build/lib/galaxy/tools/error_reports/plugins 2024-06-28T12:28:44,213 copying galaxy/tools/error_reports/plugins/influxdb.py -> build/lib/galaxy/tools/error_reports/plugins 2024-06-28T12:28:44,214 copying galaxy/tools/error_reports/plugins/slack.py -> build/lib/galaxy/tools/error_reports/plugins 2024-06-28T12:28:44,216 creating build/lib/galaxy/jobs/splitters 2024-06-28T12:28:44,217 copying galaxy/jobs/splitters/multi.py -> build/lib/galaxy/jobs/splitters 2024-06-28T12:28:44,220 copying galaxy/jobs/splitters/basic.py -> build/lib/galaxy/jobs/splitters 2024-06-28T12:28:44,221 copying galaxy/jobs/splitters/__init__.py -> build/lib/galaxy/jobs/splitters 2024-06-28T12:28:44,223 creating build/lib/galaxy/jobs/rules 2024-06-28T12:28:44,224 copying galaxy/jobs/rules/__init__.py -> build/lib/galaxy/jobs/rules 2024-06-28T12:28:44,226 creating build/lib/galaxy/jobs/runners 2024-06-28T12:28:44,227 copying galaxy/jobs/runners/chronos.py -> build/lib/galaxy/jobs/runners 2024-06-28T12:28:44,229 copying galaxy/jobs/runners/pulsar.py -> build/lib/galaxy/jobs/runners 2024-06-28T12:28:44,232 copying galaxy/jobs/runners/state_handler_factory.py -> build/lib/galaxy/jobs/runners 2024-06-28T12:28:44,234 copying galaxy/jobs/runners/condor.py -> build/lib/galaxy/jobs/runners 2024-06-28T12:28:44,236 copying galaxy/jobs/runners/kubernetes.py -> build/lib/galaxy/jobs/runners 2024-06-28T12:28:44,239 copying galaxy/jobs/runners/tasks.py -> build/lib/galaxy/jobs/runners 2024-06-28T12:28:44,241 copying galaxy/jobs/runners/godocker.py -> build/lib/galaxy/jobs/runners 2024-06-28T12:28:44,244 copying galaxy/jobs/runners/cli.py -> build/lib/galaxy/jobs/runners 2024-06-28T12:28:44,246 copying galaxy/jobs/runners/slurm.py -> build/lib/galaxy/jobs/runners 2024-06-28T12:28:44,249 copying galaxy/jobs/runners/__init__.py -> build/lib/galaxy/jobs/runners 2024-06-28T12:28:44,252 copying galaxy/jobs/runners/drmaa.py -> build/lib/galaxy/jobs/runners 2024-06-28T12:28:44,254 copying galaxy/jobs/runners/local.py -> build/lib/galaxy/jobs/runners 2024-06-28T12:28:44,256 copying galaxy/jobs/runners/univa.py -> build/lib/galaxy/jobs/runners 2024-06-28T12:28:44,258 copying galaxy/jobs/runners/pbs.py -> build/lib/galaxy/jobs/runners 2024-06-28T12:28:44,260 copying galaxy/jobs/runners/aws.py -> build/lib/galaxy/jobs/runners 2024-06-28T12:28:44,263 creating build/lib/galaxy/jobs/runners/state_handlers 2024-06-28T12:28:44,264 copying galaxy/jobs/runners/state_handlers/_safe_eval.py -> build/lib/galaxy/jobs/runners/state_handlers 2024-06-28T12:28:44,267 copying galaxy/jobs/runners/state_handlers/__init__.py -> build/lib/galaxy/jobs/runners/state_handlers 2024-06-28T12:28:44,268 copying galaxy/jobs/runners/state_handlers/resubmit.py -> build/lib/galaxy/jobs/runners/state_handlers 2024-06-28T12:28:44,271 creating build/lib/galaxy/jobs/runners/util 2024-06-28T12:28:44,272 copying galaxy/jobs/runners/util/external.py -> build/lib/galaxy/jobs/runners/util 2024-06-28T12:28:44,273 copying galaxy/jobs/runners/util/fork_safe_write.py -> build/lib/galaxy/jobs/runners/util 2024-06-28T12:28:44,275 copying galaxy/jobs/runners/util/sudo.py -> build/lib/galaxy/jobs/runners/util 2024-06-28T12:28:44,277 copying galaxy/jobs/runners/util/kill.py -> build/lib/galaxy/jobs/runners/util 2024-06-28T12:28:44,278 copying galaxy/jobs/runners/util/process_groups.py -> build/lib/galaxy/jobs/runners/util 2024-06-28T12:28:44,280 copying galaxy/jobs/runners/util/__init__.py -> build/lib/galaxy/jobs/runners/util 2024-06-28T12:28:44,282 copying galaxy/jobs/runners/util/pykube_util.py -> build/lib/galaxy/jobs/runners/util 2024-06-28T12:28:44,284 copying galaxy/jobs/runners/util/env.py -> build/lib/galaxy/jobs/runners/util 2024-06-28T12:28:44,286 creating build/lib/galaxy/jobs/runners/util/cli 2024-06-28T12:28:44,287 copying galaxy/jobs/runners/util/cli/factory.py -> build/lib/galaxy/jobs/runners/util/cli 2024-06-28T12:28:44,288 copying galaxy/jobs/runners/util/cli/__init__.py -> build/lib/galaxy/jobs/runners/util/cli 2024-06-28T12:28:44,290 creating build/lib/galaxy/jobs/runners/util/condor 2024-06-28T12:28:44,291 copying galaxy/jobs/runners/util/condor/__init__.py -> build/lib/galaxy/jobs/runners/util/condor 2024-06-28T12:28:44,293 creating build/lib/galaxy/jobs/runners/util/job_script 2024-06-28T12:28:44,294 copying galaxy/jobs/runners/util/job_script/__init__.py -> build/lib/galaxy/jobs/runners/util/job_script 2024-06-28T12:28:44,297 creating build/lib/galaxy/jobs/runners/util/cli/job 2024-06-28T12:28:44,298 copying galaxy/jobs/runners/util/cli/job/slurm_torque.py -> build/lib/galaxy/jobs/runners/util/cli/job 2024-06-28T12:28:44,299 copying galaxy/jobs/runners/util/cli/job/lsf.py -> build/lib/galaxy/jobs/runners/util/cli/job 2024-06-28T12:28:44,301 copying galaxy/jobs/runners/util/cli/job/torque.py -> build/lib/galaxy/jobs/runners/util/cli/job 2024-06-28T12:28:44,303 copying galaxy/jobs/runners/util/cli/job/slurm.py -> build/lib/galaxy/jobs/runners/util/cli/job 2024-06-28T12:28:44,305 copying galaxy/jobs/runners/util/cli/job/__init__.py -> build/lib/galaxy/jobs/runners/util/cli/job 2024-06-28T12:28:44,306 copying galaxy/jobs/runners/util/cli/job/pbs.py -> build/lib/galaxy/jobs/runners/util/cli/job 2024-06-28T12:28:44,308 creating build/lib/galaxy/jobs/runners/util/cli/shell 2024-06-28T12:28:44,309 copying galaxy/jobs/runners/util/cli/shell/rsh.py -> build/lib/galaxy/jobs/runners/util/cli/shell 2024-06-28T12:28:44,311 copying galaxy/jobs/runners/util/cli/shell/__init__.py -> build/lib/galaxy/jobs/runners/util/cli/shell 2024-06-28T12:28:44,313 copying galaxy/jobs/runners/util/cli/shell/local.py -> build/lib/galaxy/jobs/runners/util/cli/shell 2024-06-28T12:28:44,315 creating build/lib/galaxy/visualization/plugins 2024-06-28T12:28:44,316 copying galaxy/visualization/plugins/plugin.py -> build/lib/galaxy/visualization/plugins 2024-06-28T12:28:44,318 copying galaxy/visualization/plugins/utils.py -> build/lib/galaxy/visualization/plugins 2024-06-28T12:28:44,319 copying galaxy/visualization/plugins/resource_parser.py -> build/lib/galaxy/visualization/plugins 2024-06-28T12:28:44,322 copying galaxy/visualization/plugins/config_parser.py -> build/lib/galaxy/visualization/plugins 2024-06-28T12:28:44,324 copying galaxy/visualization/plugins/__init__.py -> build/lib/galaxy/visualization/plugins 2024-06-28T12:28:44,326 copying galaxy/visualization/plugins/registry.py -> build/lib/galaxy/visualization/plugins 2024-06-28T12:28:44,329 creating build/lib/galaxy/visualization/data_providers 2024-06-28T12:28:44,329 copying galaxy/visualization/data_providers/genome.py -> build/lib/galaxy/visualization/data_providers 2024-06-28T12:28:44,333 copying galaxy/visualization/data_providers/basic.py -> build/lib/galaxy/visualization/data_providers 2024-06-28T12:28:44,335 copying galaxy/visualization/data_providers/__init__.py -> build/lib/galaxy/visualization/data_providers 2024-06-28T12:28:44,337 copying galaxy/visualization/data_providers/registry.py -> build/lib/galaxy/visualization/data_providers 2024-06-28T12:28:44,339 copying galaxy/visualization/data_providers/cigar.py -> build/lib/galaxy/visualization/data_providers 2024-06-28T12:28:44,341 creating build/lib/galaxy/visualization/tracks 2024-06-28T12:28:44,342 copying galaxy/visualization/tracks/__init__.py -> build/lib/galaxy/visualization/tracks 2024-06-28T12:28:44,344 creating build/lib/galaxy/visualization/genome 2024-06-28T12:28:44,345 copying galaxy/visualization/genome/__init__.py -> build/lib/galaxy/visualization/genome 2024-06-28T12:28:44,347 creating build/lib/galaxy/visualization/data_providers/phyloviz 2024-06-28T12:28:44,348 copying galaxy/visualization/data_providers/phyloviz/phyloxmlparser.py -> build/lib/galaxy/visualization/data_providers/phyloviz 2024-06-28T12:28:44,351 copying galaxy/visualization/data_providers/phyloviz/nexusparser.py -> build/lib/galaxy/visualization/data_providers/phyloviz 2024-06-28T12:28:44,352 copying galaxy/visualization/data_providers/phyloviz/__init__.py -> build/lib/galaxy/visualization/data_providers/phyloviz 2024-06-28T12:28:44,354 copying galaxy/visualization/data_providers/phyloviz/baseparser.py -> build/lib/galaxy/visualization/data_providers/phyloviz 2024-06-28T12:28:44,356 copying galaxy/visualization/data_providers/phyloviz/newickparser.py -> build/lib/galaxy/visualization/data_providers/phyloviz 2024-06-28T12:28:44,358 creating build/lib/galaxy/workflow/reports 2024-06-28T12:28:44,359 copying galaxy/workflow/reports/__init__.py -> build/lib/galaxy/workflow/reports 2024-06-28T12:28:44,361 creating build/lib/galaxy/workflow/resources 2024-06-28T12:28:44,362 copying galaxy/workflow/resources/__init__.py -> build/lib/galaxy/workflow/resources 2024-06-28T12:28:44,365 creating build/lib/galaxy/workflow/schedulers 2024-06-28T12:28:44,365 copying galaxy/workflow/schedulers/__init__.py -> build/lib/galaxy/workflow/schedulers 2024-06-28T12:28:44,367 copying galaxy/workflow/schedulers/core.py -> build/lib/galaxy/workflow/schedulers 2024-06-28T12:28:44,369 creating build/lib/galaxy/workflow/refactor 2024-06-28T12:28:44,370 copying galaxy/workflow/refactor/execute.py -> build/lib/galaxy/workflow/refactor 2024-06-28T12:28:44,373 copying galaxy/workflow/refactor/__init__.py -> build/lib/galaxy/workflow/refactor 2024-06-28T12:28:44,374 copying galaxy/workflow/refactor/schema.py -> build/lib/galaxy/workflow/refactor 2024-06-28T12:28:44,378 creating build/lib/galaxy/workflow/reports/generators 2024-06-28T12:28:44,379 copying galaxy/workflow/reports/generators/__init__.py -> build/lib/galaxy/workflow/reports/generators 2024-06-28T12:28:44,381 copying galaxy/workflow/reports/generators/markdown.py -> build/lib/galaxy/workflow/reports/generators 2024-06-28T12:28:44,384 creating build/lib/galaxy/tool_shed/metadata 2024-06-28T12:28:44,385 copying galaxy/tool_shed/metadata/metadata_generator.py -> build/lib/galaxy/tool_shed/metadata 2024-06-28T12:28:44,389 copying galaxy/tool_shed/metadata/__init__.py -> build/lib/galaxy/tool_shed/metadata 2024-06-28T12:28:44,391 creating build/lib/galaxy/tool_shed/tools 2024-06-28T12:28:44,392 copying galaxy/tool_shed/tools/tool_validator.py -> build/lib/galaxy/tool_shed/tools 2024-06-28T12:28:44,395 copying galaxy/tool_shed/tools/data_table_manager.py -> build/lib/galaxy/tool_shed/tools 2024-06-28T12:28:44,398 copying galaxy/tool_shed/tools/__init__.py -> build/lib/galaxy/tool_shed/tools 2024-06-28T12:28:44,400 creating build/lib/galaxy/tool_shed/unittest_utils 2024-06-28T12:28:44,401 copying galaxy/tool_shed/unittest_utils/__init__.py -> build/lib/galaxy/tool_shed/unittest_utils 2024-06-28T12:28:44,405 creating build/lib/galaxy/tool_shed/galaxy_install 2024-06-28T12:28:44,406 copying galaxy/tool_shed/galaxy_install/installed_repository_manager.py -> build/lib/galaxy/tool_shed/galaxy_install 2024-06-28T12:28:44,410 copying galaxy/tool_shed/galaxy_install/install_manager.py -> build/lib/galaxy/tool_shed/galaxy_install 2024-06-28T12:28:44,414 copying galaxy/tool_shed/galaxy_install/update_repository_manager.py -> build/lib/galaxy/tool_shed/galaxy_install 2024-06-28T12:28:44,417 copying galaxy/tool_shed/galaxy_install/__init__.py -> build/lib/galaxy/tool_shed/galaxy_install 2024-06-28T12:28:44,419 copying galaxy/tool_shed/galaxy_install/client.py -> build/lib/galaxy/tool_shed/galaxy_install 2024-06-28T12:28:44,422 creating build/lib/galaxy/tool_shed/util 2024-06-28T12:28:44,424 copying galaxy/tool_shed/util/metadata_util.py -> build/lib/galaxy/tool_shed/util 2024-06-28T12:28:44,426 copying galaxy/tool_shed/util/dependency_display.py -> build/lib/galaxy/tool_shed/util 2024-06-28T12:28:44,429 copying galaxy/tool_shed/util/hg_util.py -> build/lib/galaxy/tool_shed/util 2024-06-28T12:28:44,432 copying galaxy/tool_shed/util/utility_container_manager.py -> build/lib/galaxy/tool_shed/util 2024-06-28T12:28:44,437 copying galaxy/tool_shed/util/repository_util.py -> build/lib/galaxy/tool_shed/util 2024-06-28T12:28:44,441 copying galaxy/tool_shed/util/tool_dependency_util.py -> build/lib/galaxy/tool_shed/util 2024-06-28T12:28:44,444 copying galaxy/tool_shed/util/container_util.py -> build/lib/galaxy/tool_shed/util 2024-06-28T12:28:44,446 copying galaxy/tool_shed/util/shed_util_common.py -> build/lib/galaxy/tool_shed/util 2024-06-28T12:28:44,450 copying galaxy/tool_shed/util/__init__.py -> build/lib/galaxy/tool_shed/util 2024-06-28T12:28:44,452 copying galaxy/tool_shed/util/basic_util.py -> build/lib/galaxy/tool_shed/util 2024-06-28T12:28:44,454 copying galaxy/tool_shed/util/tool_util.py -> build/lib/galaxy/tool_shed/util 2024-06-28T12:28:44,458 creating build/lib/galaxy/tool_shed/galaxy_install/metadata 2024-06-28T12:28:44,459 copying galaxy/tool_shed/galaxy_install/metadata/installed_repository_metadata_manager.py -> build/lib/galaxy/tool_shed/galaxy_install/metadata 2024-06-28T12:28:44,461 copying galaxy/tool_shed/galaxy_install/metadata/__init__.py -> build/lib/galaxy/tool_shed/galaxy_install/metadata 2024-06-28T12:28:44,464 creating build/lib/galaxy/tool_shed/galaxy_install/repository_dependencies 2024-06-28T12:28:44,465 copying galaxy/tool_shed/galaxy_install/repository_dependencies/__init__.py -> build/lib/galaxy/tool_shed/galaxy_install/repository_dependencies 2024-06-28T12:28:44,466 copying galaxy/tool_shed/galaxy_install/repository_dependencies/repository_dependency_manager.py -> build/lib/galaxy/tool_shed/galaxy_install/repository_dependencies 2024-06-28T12:28:44,471 creating build/lib/galaxy/tool_shed/galaxy_install/tools 2024-06-28T12:28:44,472 copying galaxy/tool_shed/galaxy_install/tools/tool_panel_manager.py -> build/lib/galaxy/tool_shed/galaxy_install/tools 2024-06-28T12:28:44,475 copying galaxy/tool_shed/galaxy_install/tools/__init__.py -> build/lib/galaxy/tool_shed/galaxy_install/tools 2024-06-28T12:28:44,477 copying galaxy/tool_shed/galaxy_install/tools/data_manager.py -> build/lib/galaxy/tool_shed/galaxy_install/tools 2024-06-28T12:28:44,480 creating build/lib/galaxy_ext/metadata 2024-06-28T12:28:44,481 copying galaxy_ext/metadata/set_metadata.py -> build/lib/galaxy_ext/metadata 2024-06-28T12:28:44,482 copying galaxy_ext/metadata/__init__.py -> build/lib/galaxy_ext/metadata 2024-06-28T12:28:44,484 creating build/lib/galaxy_ext/expressions 2024-06-28T12:28:44,485 copying galaxy_ext/expressions/__init__.py -> build/lib/galaxy_ext/expressions 2024-06-28T12:28:44,487 copying galaxy_ext/expressions/handle_job.py -> build/lib/galaxy_ext/expressions 2024-06-28T12:28:44,489 creating build/lib/galaxy_ext/container_monitor 2024-06-28T12:28:44,490 copying galaxy_ext/container_monitor/monitor.py -> build/lib/galaxy_ext/container_monitor 2024-06-28T12:28:44,492 copying galaxy_ext/container_monitor/__init__.py -> build/lib/galaxy_ext/container_monitor 2024-06-28T12:28:44,494 creating build/lib/tool_shed_client/schema 2024-06-28T12:28:44,495 copying tool_shed_client/schema/__init__.py -> build/lib/tool_shed_client/schema 2024-06-28T12:28:44,497 copying tool_shed_client/schema/trs_service_info.py -> build/lib/tool_shed_client/schema 2024-06-28T12:28:44,499 copying tool_shed_client/schema/trs.py -> build/lib/tool_shed_client/schema 2024-06-28T12:28:44,502 running egg_info 2024-06-28T12:28:44,505 writing galaxy_app.egg-info/PKG-INFO 2024-06-28T12:28:44,512 writing dependency_links to galaxy_app.egg-info/dependency_links.txt 2024-06-28T12:28:44,514 writing entry points to galaxy_app.egg-info/entry_points.txt 2024-06-28T12:28:44,516 writing requirements to galaxy_app.egg-info/requires.txt 2024-06-28T12:28:44,517 writing top-level names to galaxy_app.egg-info/top_level.txt 2024-06-28T12:28:44,571 reading manifest file 'galaxy_app.egg-info/SOURCES.txt' 2024-06-28T12:28:44,586 reading manifest template 'MANIFEST.in' 2024-06-28T12:28:45,090 adding license file 'LICENSE' 2024-06-28T12:28:45,117 writing manifest file 'galaxy_app.egg-info/SOURCES.txt' 2024-06-28T12:28:45,122 /tmp/pip-build-env-0_gg1da7/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'galaxy.tools.bundled' is absent from the `packages` configuration. 2024-06-28T12:28:45,123 !! 2024-06-28T12:28:45,124 ******************************************************************************** 2024-06-28T12:28:45,124 ############################ 2024-06-28T12:28:45,125 # Package would be ignored # 2024-06-28T12:28:45,126 ############################ 2024-06-28T12:28:45,126 Python recognizes 'galaxy.tools.bundled' as an importable package[^1], 2024-06-28T12:28:45,126 but it is absent from setuptools' `packages` configuration. 2024-06-28T12:28:45,127 This leads to an ambiguous overall configuration. If you want to distribute this 2024-06-28T12:28:45,128 package, please make sure that 'galaxy.tools.bundled' is explicitly added 2024-06-28T12:28:45,128 to the `packages` configuration field. 2024-06-28T12:28:45,129 Alternatively, you can also rely on setuptools' discovery methods 2024-06-28T12:28:45,129 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-06-28T12:28:45,130 instead of `find_packages(...)`/`find:`). 2024-06-28T12:28:45,131 You can read more about "package discovery" on setuptools documentation page: 2024-06-28T12:28:45,132 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-06-28T12:28:45,133 If you don't want 'galaxy.tools.bundled' to be distributed and are 2024-06-28T12:28:45,134 already explicitly excluding 'galaxy.tools.bundled' via 2024-06-28T12:28:45,135 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-06-28T12:28:45,135 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-06-28T12:28:45,136 combination with a more fine grained `package-data` configuration. 2024-06-28T12:28:45,137 You can read more about "package data files" on setuptools documentation page: 2024-06-28T12:28:45,139 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-06-28T12:28:45,141 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-06-28T12:28:45,142 even if it does not contain any `.py` files. 2024-06-28T12:28:45,142 On the other hand, currently there is no concept of package data 2024-06-28T12:28:45,143 directory, all directories are treated like packages. 2024-06-28T12:28:45,143 ******************************************************************************** 2024-06-28T12:28:45,145 !! 2024-06-28T12:28:45,145 check.warn(importable) 2024-06-28T12:28:45,146 /tmp/pip-build-env-0_gg1da7/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'galaxy.tools.bundled.data_export' is absent from the `packages` configuration. 2024-06-28T12:28:45,146 !! 2024-06-28T12:28:45,147 ******************************************************************************** 2024-06-28T12:28:45,148 ############################ 2024-06-28T12:28:45,149 # Package would be ignored # 2024-06-28T12:28:45,149 ############################ 2024-06-28T12:28:45,150 Python recognizes 'galaxy.tools.bundled.data_export' as an importable package[^1], 2024-06-28T12:28:45,150 but it is absent from setuptools' `packages` configuration. 2024-06-28T12:28:45,152 This leads to an ambiguous overall configuration. If you want to distribute this 2024-06-28T12:28:45,152 package, please make sure that 'galaxy.tools.bundled.data_export' is explicitly added 2024-06-28T12:28:45,153 to the `packages` configuration field. 2024-06-28T12:28:45,154 Alternatively, you can also rely on setuptools' discovery methods 2024-06-28T12:28:45,155 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-06-28T12:28:45,155 instead of `find_packages(...)`/`find:`). 2024-06-28T12:28:45,156 You can read more about "package discovery" on setuptools documentation page: 2024-06-28T12:28:45,157 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-06-28T12:28:45,158 If you don't want 'galaxy.tools.bundled.data_export' to be distributed and are 2024-06-28T12:28:45,158 already explicitly excluding 'galaxy.tools.bundled.data_export' via 2024-06-28T12:28:45,158 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-06-28T12:28:45,159 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-06-28T12:28:45,159 combination with a more fine grained `package-data` configuration. 2024-06-28T12:28:45,160 You can read more about "package data files" on setuptools documentation page: 2024-06-28T12:28:45,161 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-06-28T12:28:45,162 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-06-28T12:28:45,162 even if it does not contain any `.py` files. 2024-06-28T12:28:45,163 On the other hand, currently there is no concept of package data 2024-06-28T12:28:45,163 directory, all directories are treated like packages. 2024-06-28T12:28:45,164 ******************************************************************************** 2024-06-28T12:28:45,165 !! 2024-06-28T12:28:45,166 check.warn(importable) 2024-06-28T12:28:45,166 /tmp/pip-build-env-0_gg1da7/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'galaxy.tools.bundled.data_source' is absent from the `packages` configuration. 2024-06-28T12:28:45,167 !! 2024-06-28T12:28:45,168 ******************************************************************************** 2024-06-28T12:28:45,169 ############################ 2024-06-28T12:28:45,169 # Package would be ignored # 2024-06-28T12:28:45,170 ############################ 2024-06-28T12:28:45,170 Python recognizes 'galaxy.tools.bundled.data_source' as an importable package[^1], 2024-06-28T12:28:45,171 but it is absent from setuptools' `packages` configuration. 2024-06-28T12:28:45,172 This leads to an ambiguous overall configuration. If you want to distribute this 2024-06-28T12:28:45,172 package, please make sure that 'galaxy.tools.bundled.data_source' is explicitly added 2024-06-28T12:28:45,173 to the `packages` configuration field. 2024-06-28T12:28:45,174 Alternatively, you can also rely on setuptools' discovery methods 2024-06-28T12:28:45,175 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-06-28T12:28:45,175 instead of `find_packages(...)`/`find:`). 2024-06-28T12:28:45,176 You can read more about "package discovery" on setuptools documentation page: 2024-06-28T12:28:45,178 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-06-28T12:28:45,179 If you don't want 'galaxy.tools.bundled.data_source' to be distributed and are 2024-06-28T12:28:45,179 already explicitly excluding 'galaxy.tools.bundled.data_source' via 2024-06-28T12:28:45,180 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-06-28T12:28:45,181 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-06-28T12:28:45,181 combination with a more fine grained `package-data` configuration. 2024-06-28T12:28:45,183 You can read more about "package data files" on setuptools documentation page: 2024-06-28T12:28:45,184 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-06-28T12:28:45,185 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-06-28T12:28:45,185 even if it does not contain any `.py` files. 2024-06-28T12:28:45,186 On the other hand, currently there is no concept of package data 2024-06-28T12:28:45,186 directory, all directories are treated like packages. 2024-06-28T12:28:45,187 ******************************************************************************** 2024-06-28T12:28:45,188 !! 2024-06-28T12:28:45,188 check.warn(importable) 2024-06-28T12:28:45,189 /tmp/pip-build-env-0_gg1da7/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'galaxy.tools.bundled.expression_tools' is absent from the `packages` configuration. 2024-06-28T12:28:45,189 !! 2024-06-28T12:28:45,190 ******************************************************************************** 2024-06-28T12:28:45,190 ############################ 2024-06-28T12:28:45,191 # Package would be ignored # 2024-06-28T12:28:45,191 ############################ 2024-06-28T12:28:45,192 Python recognizes 'galaxy.tools.bundled.expression_tools' as an importable package[^1], 2024-06-28T12:28:45,192 but it is absent from setuptools' `packages` configuration. 2024-06-28T12:28:45,193 This leads to an ambiguous overall configuration. If you want to distribute this 2024-06-28T12:28:45,194 package, please make sure that 'galaxy.tools.bundled.expression_tools' is explicitly added 2024-06-28T12:28:45,194 to the `packages` configuration field. 2024-06-28T12:28:45,195 Alternatively, you can also rely on setuptools' discovery methods 2024-06-28T12:28:45,196 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-06-28T12:28:45,196 instead of `find_packages(...)`/`find:`). 2024-06-28T12:28:45,197 You can read more about "package discovery" on setuptools documentation page: 2024-06-28T12:28:45,199 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-06-28T12:28:45,200 If you don't want 'galaxy.tools.bundled.expression_tools' to be distributed and are 2024-06-28T12:28:45,200 already explicitly excluding 'galaxy.tools.bundled.expression_tools' via 2024-06-28T12:28:45,200 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-06-28T12:28:45,201 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-06-28T12:28:45,201 combination with a more fine grained `package-data` configuration. 2024-06-28T12:28:45,202 You can read more about "package data files" on setuptools documentation page: 2024-06-28T12:28:45,203 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-06-28T12:28:45,205 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-06-28T12:28:45,205 even if it does not contain any `.py` files. 2024-06-28T12:28:45,206 On the other hand, currently there is no concept of package data 2024-06-28T12:28:45,206 directory, all directories are treated like packages. 2024-06-28T12:28:45,207 ******************************************************************************** 2024-06-28T12:28:45,210 !! 2024-06-28T12:28:45,211 check.warn(importable) 2024-06-28T12:28:45,211 /tmp/pip-build-env-0_gg1da7/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'galaxy.tools.bundled.extract' is absent from the `packages` configuration. 2024-06-28T12:28:45,212 !! 2024-06-28T12:28:45,213 ******************************************************************************** 2024-06-28T12:28:45,213 ############################ 2024-06-28T12:28:45,214 # Package would be ignored # 2024-06-28T12:28:45,215 ############################ 2024-06-28T12:28:45,215 Python recognizes 'galaxy.tools.bundled.extract' as an importable package[^1], 2024-06-28T12:28:45,215 but it is absent from setuptools' `packages` configuration. 2024-06-28T12:28:45,216 This leads to an ambiguous overall configuration. If you want to distribute this 2024-06-28T12:28:45,216 package, please make sure that 'galaxy.tools.bundled.extract' is explicitly added 2024-06-28T12:28:45,217 to the `packages` configuration field. 2024-06-28T12:28:45,218 Alternatively, you can also rely on setuptools' discovery methods 2024-06-28T12:28:45,218 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-06-28T12:28:45,218 instead of `find_packages(...)`/`find:`). 2024-06-28T12:28:45,219 You can read more about "package discovery" on setuptools documentation page: 2024-06-28T12:28:45,220 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-06-28T12:28:45,221 If you don't want 'galaxy.tools.bundled.extract' to be distributed and are 2024-06-28T12:28:45,222 already explicitly excluding 'galaxy.tools.bundled.extract' via 2024-06-28T12:28:45,222 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-06-28T12:28:45,223 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-06-28T12:28:45,223 combination with a more fine grained `package-data` configuration. 2024-06-28T12:28:45,224 You can read more about "package data files" on setuptools documentation page: 2024-06-28T12:28:45,225 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-06-28T12:28:45,226 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-06-28T12:28:45,227 even if it does not contain any `.py` files. 2024-06-28T12:28:45,228 On the other hand, currently there is no concept of package data 2024-06-28T12:28:45,228 directory, all directories are treated like packages. 2024-06-28T12:28:45,228 ******************************************************************************** 2024-06-28T12:28:45,229 !! 2024-06-28T12:28:45,230 check.warn(importable) 2024-06-28T12:28:45,230 /tmp/pip-build-env-0_gg1da7/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'galaxy.tools.bundled.filters' is absent from the `packages` configuration. 2024-06-28T12:28:45,231 !! 2024-06-28T12:28:45,232 ******************************************************************************** 2024-06-28T12:28:45,232 ############################ 2024-06-28T12:28:45,233 # Package would be ignored # 2024-06-28T12:28:45,233 ############################ 2024-06-28T12:28:45,234 Python recognizes 'galaxy.tools.bundled.filters' as an importable package[^1], 2024-06-28T12:28:45,234 but it is absent from setuptools' `packages` configuration. 2024-06-28T12:28:45,235 This leads to an ambiguous overall configuration. If you want to distribute this 2024-06-28T12:28:45,236 package, please make sure that 'galaxy.tools.bundled.filters' is explicitly added 2024-06-28T12:28:45,236 to the `packages` configuration field. 2024-06-28T12:28:45,237 Alternatively, you can also rely on setuptools' discovery methods 2024-06-28T12:28:45,238 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-06-28T12:28:45,238 instead of `find_packages(...)`/`find:`). 2024-06-28T12:28:45,240 You can read more about "package discovery" on setuptools documentation page: 2024-06-28T12:28:45,241 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-06-28T12:28:45,242 If you don't want 'galaxy.tools.bundled.filters' to be distributed and are 2024-06-28T12:28:45,242 already explicitly excluding 'galaxy.tools.bundled.filters' via 2024-06-28T12:28:45,243 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-06-28T12:28:45,243 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-06-28T12:28:45,243 combination with a more fine grained `package-data` configuration. 2024-06-28T12:28:45,244 You can read more about "package data files" on setuptools documentation page: 2024-06-28T12:28:45,245 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-06-28T12:28:45,247 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-06-28T12:28:45,247 even if it does not contain any `.py` files. 2024-06-28T12:28:45,247 On the other hand, currently there is no concept of package data 2024-06-28T12:28:45,248 directory, all directories are treated like packages. 2024-06-28T12:28:45,248 ******************************************************************************** 2024-06-28T12:28:45,249 !! 2024-06-28T12:28:45,250 check.warn(importable) 2024-06-28T12:28:45,250 /tmp/pip-build-env-0_gg1da7/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'galaxy.tools.bundled.filters.gff' is absent from the `packages` configuration. 2024-06-28T12:28:45,251 !! 2024-06-28T12:28:45,252 ******************************************************************************** 2024-06-28T12:28:45,252 ############################ 2024-06-28T12:28:45,253 # Package would be ignored # 2024-06-28T12:28:45,253 ############################ 2024-06-28T12:28:45,254 Python recognizes 'galaxy.tools.bundled.filters.gff' as an importable package[^1], 2024-06-28T12:28:45,254 but it is absent from setuptools' `packages` configuration. 2024-06-28T12:28:45,255 This leads to an ambiguous overall configuration. If you want to distribute this 2024-06-28T12:28:45,256 package, please make sure that 'galaxy.tools.bundled.filters.gff' is explicitly added 2024-06-28T12:28:45,256 to the `packages` configuration field. 2024-06-28T12:28:45,257 Alternatively, you can also rely on setuptools' discovery methods 2024-06-28T12:28:45,258 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-06-28T12:28:45,258 instead of `find_packages(...)`/`find:`). 2024-06-28T12:28:45,259 You can read more about "package discovery" on setuptools documentation page: 2024-06-28T12:28:45,260 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-06-28T12:28:45,261 If you don't want 'galaxy.tools.bundled.filters.gff' to be distributed and are 2024-06-28T12:28:45,262 already explicitly excluding 'galaxy.tools.bundled.filters.gff' via 2024-06-28T12:28:45,262 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-06-28T12:28:45,263 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-06-28T12:28:45,263 combination with a more fine grained `package-data` configuration. 2024-06-28T12:28:45,264 You can read more about "package data files" on setuptools documentation page: 2024-06-28T12:28:45,265 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-06-28T12:28:45,267 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-06-28T12:28:45,267 even if it does not contain any `.py` files. 2024-06-28T12:28:45,268 On the other hand, currently there is no concept of package data 2024-06-28T12:28:45,268 directory, all directories are treated like packages. 2024-06-28T12:28:45,269 ******************************************************************************** 2024-06-28T12:28:45,270 !! 2024-06-28T12:28:45,270 check.warn(importable) 2024-06-28T12:28:45,271 /tmp/pip-build-env-0_gg1da7/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'galaxy.tools.bundled.interactive' is absent from the `packages` configuration. 2024-06-28T12:28:45,271 !! 2024-06-28T12:28:45,272 ******************************************************************************** 2024-06-28T12:28:45,272 ############################ 2024-06-28T12:28:45,273 # Package would be ignored # 2024-06-28T12:28:45,273 ############################ 2024-06-28T12:28:45,274 Python recognizes 'galaxy.tools.bundled.interactive' as an importable package[^1], 2024-06-28T12:28:45,274 but it is absent from setuptools' `packages` configuration. 2024-06-28T12:28:45,275 This leads to an ambiguous overall configuration. If you want to distribute this 2024-06-28T12:28:45,276 package, please make sure that 'galaxy.tools.bundled.interactive' is explicitly added 2024-06-28T12:28:45,276 to the `packages` configuration field. 2024-06-28T12:28:45,277 Alternatively, you can also rely on setuptools' discovery methods 2024-06-28T12:28:45,277 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-06-28T12:28:45,278 instead of `find_packages(...)`/`find:`). 2024-06-28T12:28:45,279 You can read more about "package discovery" on setuptools documentation page: 2024-06-28T12:28:45,279 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-06-28T12:28:45,280 If you don't want 'galaxy.tools.bundled.interactive' to be distributed and are 2024-06-28T12:28:45,281 already explicitly excluding 'galaxy.tools.bundled.interactive' via 2024-06-28T12:28:45,282 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-06-28T12:28:45,282 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-06-28T12:28:45,282 combination with a more fine grained `package-data` configuration. 2024-06-28T12:28:45,283 You can read more about "package data files" on setuptools documentation page: 2024-06-28T12:28:45,284 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-06-28T12:28:45,286 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-06-28T12:28:45,286 even if it does not contain any `.py` files. 2024-06-28T12:28:45,287 On the other hand, currently there is no concept of package data 2024-06-28T12:28:45,287 directory, all directories are treated like packages. 2024-06-28T12:28:45,288 ******************************************************************************** 2024-06-28T12:28:45,289 !! 2024-06-28T12:28:45,289 check.warn(importable) 2024-06-28T12:28:45,290 /tmp/pip-build-env-0_gg1da7/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'galaxy.tools.bundled.maf' is absent from the `packages` configuration. 2024-06-28T12:28:45,290 !! 2024-06-28T12:28:45,291 ******************************************************************************** 2024-06-28T12:28:45,292 ############################ 2024-06-28T12:28:45,292 # Package would be ignored # 2024-06-28T12:28:45,293 ############################ 2024-06-28T12:28:45,293 Python recognizes 'galaxy.tools.bundled.maf' as an importable package[^1], 2024-06-28T12:28:45,294 but it is absent from setuptools' `packages` configuration. 2024-06-28T12:28:45,295 This leads to an ambiguous overall configuration. If you want to distribute this 2024-06-28T12:28:45,296 package, please make sure that 'galaxy.tools.bundled.maf' is explicitly added 2024-06-28T12:28:45,296 to the `packages` configuration field. 2024-06-28T12:28:45,297 Alternatively, you can also rely on setuptools' discovery methods 2024-06-28T12:28:45,298 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-06-28T12:28:45,298 instead of `find_packages(...)`/`find:`). 2024-06-28T12:28:45,299 You can read more about "package discovery" on setuptools documentation page: 2024-06-28T12:28:45,300 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-06-28T12:28:45,301 If you don't want 'galaxy.tools.bundled.maf' to be distributed and are 2024-06-28T12:28:45,301 already explicitly excluding 'galaxy.tools.bundled.maf' via 2024-06-28T12:28:45,302 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-06-28T12:28:45,302 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-06-28T12:28:45,303 combination with a more fine grained `package-data` configuration. 2024-06-28T12:28:45,303 You can read more about "package data files" on setuptools documentation page: 2024-06-28T12:28:45,304 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-06-28T12:28:45,306 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-06-28T12:28:45,306 even if it does not contain any `.py` files. 2024-06-28T12:28:45,307 On the other hand, currently there is no concept of package data 2024-06-28T12:28:45,307 directory, all directories are treated like packages. 2024-06-28T12:28:45,308 ******************************************************************************** 2024-06-28T12:28:45,309 !! 2024-06-28T12:28:45,309 check.warn(importable) 2024-06-28T12:28:45,309 /tmp/pip-build-env-0_gg1da7/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'galaxy.tools.bundled.meme' is absent from the `packages` configuration. 2024-06-28T12:28:45,310 !! 2024-06-28T12:28:45,311 ******************************************************************************** 2024-06-28T12:28:45,311 ############################ 2024-06-28T12:28:45,312 # Package would be ignored # 2024-06-28T12:28:45,312 ############################ 2024-06-28T12:28:45,313 Python recognizes 'galaxy.tools.bundled.meme' as an importable package[^1], 2024-06-28T12:28:45,314 but it is absent from setuptools' `packages` configuration. 2024-06-28T12:28:45,315 This leads to an ambiguous overall configuration. If you want to distribute this 2024-06-28T12:28:45,315 package, please make sure that 'galaxy.tools.bundled.meme' is explicitly added 2024-06-28T12:28:45,316 to the `packages` configuration field. 2024-06-28T12:28:45,317 Alternatively, you can also rely on setuptools' discovery methods 2024-06-28T12:28:45,317 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-06-28T12:28:45,318 instead of `find_packages(...)`/`find:`). 2024-06-28T12:28:45,319 You can read more about "package discovery" on setuptools documentation page: 2024-06-28T12:28:45,320 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-06-28T12:28:45,321 If you don't want 'galaxy.tools.bundled.meme' to be distributed and are 2024-06-28T12:28:45,321 already explicitly excluding 'galaxy.tools.bundled.meme' via 2024-06-28T12:28:45,322 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-06-28T12:28:45,322 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-06-28T12:28:45,323 combination with a more fine grained `package-data` configuration. 2024-06-28T12:28:45,324 You can read more about "package data files" on setuptools documentation page: 2024-06-28T12:28:45,325 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-06-28T12:28:45,327 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-06-28T12:28:45,327 even if it does not contain any `.py` files. 2024-06-28T12:28:45,327 On the other hand, currently there is no concept of package data 2024-06-28T12:28:45,328 directory, all directories are treated like packages. 2024-06-28T12:28:45,328 ******************************************************************************** 2024-06-28T12:28:45,329 !! 2024-06-28T12:28:45,329 check.warn(importable) 2024-06-28T12:28:45,330 /tmp/pip-build-env-0_gg1da7/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'galaxy.tools.bundled.metag_tools' is absent from the `packages` configuration. 2024-06-28T12:28:45,330 !! 2024-06-28T12:28:45,331 ******************************************************************************** 2024-06-28T12:28:45,331 ############################ 2024-06-28T12:28:45,332 # Package would be ignored # 2024-06-28T12:28:45,332 ############################ 2024-06-28T12:28:45,333 Python recognizes 'galaxy.tools.bundled.metag_tools' as an importable package[^1], 2024-06-28T12:28:45,333 but it is absent from setuptools' `packages` configuration. 2024-06-28T12:28:45,334 This leads to an ambiguous overall configuration. If you want to distribute this 2024-06-28T12:28:45,334 package, please make sure that 'galaxy.tools.bundled.metag_tools' is explicitly added 2024-06-28T12:28:45,335 to the `packages` configuration field. 2024-06-28T12:28:45,336 Alternatively, you can also rely on setuptools' discovery methods 2024-06-28T12:28:45,336 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-06-28T12:28:45,337 instead of `find_packages(...)`/`find:`). 2024-06-28T12:28:45,338 You can read more about "package discovery" on setuptools documentation page: 2024-06-28T12:28:45,339 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-06-28T12:28:45,340 If you don't want 'galaxy.tools.bundled.metag_tools' to be distributed and are 2024-06-28T12:28:45,340 already explicitly excluding 'galaxy.tools.bundled.metag_tools' via 2024-06-28T12:28:45,341 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-06-28T12:28:45,341 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-06-28T12:28:45,342 combination with a more fine grained `package-data` configuration. 2024-06-28T12:28:45,343 You can read more about "package data files" on setuptools documentation page: 2024-06-28T12:28:45,344 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-06-28T12:28:45,346 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-06-28T12:28:45,346 even if it does not contain any `.py` files. 2024-06-28T12:28:45,347 On the other hand, currently there is no concept of package data 2024-06-28T12:28:45,347 directory, all directories are treated like packages. 2024-06-28T12:28:45,348 ******************************************************************************** 2024-06-28T12:28:45,349 !! 2024-06-28T12:28:45,349 check.warn(importable) 2024-06-28T12:28:45,350 /tmp/pip-build-env-0_gg1da7/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'galaxy.tools.bundled.next_gen_conversion' is absent from the `packages` configuration. 2024-06-28T12:28:45,350 !! 2024-06-28T12:28:45,351 ******************************************************************************** 2024-06-28T12:28:45,352 ############################ 2024-06-28T12:28:45,353 # Package would be ignored # 2024-06-28T12:28:45,353 ############################ 2024-06-28T12:28:45,354 Python recognizes 'galaxy.tools.bundled.next_gen_conversion' as an importable package[^1], 2024-06-28T12:28:45,354 but it is absent from setuptools' `packages` configuration. 2024-06-28T12:28:45,355 This leads to an ambiguous overall configuration. If you want to distribute this 2024-06-28T12:28:45,355 package, please make sure that 'galaxy.tools.bundled.next_gen_conversion' is explicitly added 2024-06-28T12:28:45,356 to the `packages` configuration field. 2024-06-28T12:28:45,357 Alternatively, you can also rely on setuptools' discovery methods 2024-06-28T12:28:45,357 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-06-28T12:28:45,358 instead of `find_packages(...)`/`find:`). 2024-06-28T12:28:45,359 You can read more about "package discovery" on setuptools documentation page: 2024-06-28T12:28:45,359 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-06-28T12:28:45,360 If you don't want 'galaxy.tools.bundled.next_gen_conversion' to be distributed and are 2024-06-28T12:28:45,361 already explicitly excluding 'galaxy.tools.bundled.next_gen_conversion' via 2024-06-28T12:28:45,361 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-06-28T12:28:45,362 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-06-28T12:28:45,362 combination with a more fine grained `package-data` configuration. 2024-06-28T12:28:45,363 You can read more about "package data files" on setuptools documentation page: 2024-06-28T12:28:45,364 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-06-28T12:28:45,366 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-06-28T12:28:45,366 even if it does not contain any `.py` files. 2024-06-28T12:28:45,367 On the other hand, currently there is no concept of package data 2024-06-28T12:28:45,367 directory, all directories are treated like packages. 2024-06-28T12:28:45,368 ******************************************************************************** 2024-06-28T12:28:45,368 !! 2024-06-28T12:28:45,369 check.warn(importable) 2024-06-28T12:28:45,370 /tmp/pip-build-env-0_gg1da7/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'galaxy.tools.bundled.ngs_simulation' is absent from the `packages` configuration. 2024-06-28T12:28:45,370 !! 2024-06-28T12:28:45,371 ******************************************************************************** 2024-06-28T12:28:45,371 ############################ 2024-06-28T12:28:45,372 # Package would be ignored # 2024-06-28T12:28:45,372 ############################ 2024-06-28T12:28:45,373 Python recognizes 'galaxy.tools.bundled.ngs_simulation' as an importable package[^1], 2024-06-28T12:28:45,373 but it is absent from setuptools' `packages` configuration. 2024-06-28T12:28:45,374 This leads to an ambiguous overall configuration. If you want to distribute this 2024-06-28T12:28:45,375 package, please make sure that 'galaxy.tools.bundled.ngs_simulation' is explicitly added 2024-06-28T12:28:45,375 to the `packages` configuration field. 2024-06-28T12:28:45,376 Alternatively, you can also rely on setuptools' discovery methods 2024-06-28T12:28:45,377 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-06-28T12:28:45,378 instead of `find_packages(...)`/`find:`). 2024-06-28T12:28:45,378 You can read more about "package discovery" on setuptools documentation page: 2024-06-28T12:28:45,380 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-06-28T12:28:45,381 If you don't want 'galaxy.tools.bundled.ngs_simulation' to be distributed and are 2024-06-28T12:28:45,382 already explicitly excluding 'galaxy.tools.bundled.ngs_simulation' via 2024-06-28T12:28:45,382 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-06-28T12:28:45,382 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-06-28T12:28:45,383 combination with a more fine grained `package-data` configuration. 2024-06-28T12:28:45,384 You can read more about "package data files" on setuptools documentation page: 2024-06-28T12:28:45,385 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-06-28T12:28:45,386 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-06-28T12:28:45,386 even if it does not contain any `.py` files. 2024-06-28T12:28:45,387 On the other hand, currently there is no concept of package data 2024-06-28T12:28:45,388 directory, all directories are treated like packages. 2024-06-28T12:28:45,388 ******************************************************************************** 2024-06-28T12:28:45,389 !! 2024-06-28T12:28:45,390 check.warn(importable) 2024-06-28T12:28:45,390 /tmp/pip-build-env-0_gg1da7/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'galaxy.tools.bundled.phenotype_association' is absent from the `packages` configuration. 2024-06-28T12:28:45,391 !! 2024-06-28T12:28:45,391 ******************************************************************************** 2024-06-28T12:28:45,392 ############################ 2024-06-28T12:28:45,392 # Package would be ignored # 2024-06-28T12:28:45,393 ############################ 2024-06-28T12:28:45,393 Python recognizes 'galaxy.tools.bundled.phenotype_association' as an importable package[^1], 2024-06-28T12:28:45,394 but it is absent from setuptools' `packages` configuration. 2024-06-28T12:28:45,395 This leads to an ambiguous overall configuration. If you want to distribute this 2024-06-28T12:28:45,395 package, please make sure that 'galaxy.tools.bundled.phenotype_association' is explicitly added 2024-06-28T12:28:45,396 to the `packages` configuration field. 2024-06-28T12:28:45,397 Alternatively, you can also rely on setuptools' discovery methods 2024-06-28T12:28:45,397 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-06-28T12:28:45,398 instead of `find_packages(...)`/`find:`). 2024-06-28T12:28:45,399 You can read more about "package discovery" on setuptools documentation page: 2024-06-28T12:28:45,400 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-06-28T12:28:45,401 If you don't want 'galaxy.tools.bundled.phenotype_association' to be distributed and are 2024-06-28T12:28:45,401 already explicitly excluding 'galaxy.tools.bundled.phenotype_association' via 2024-06-28T12:28:45,402 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-06-28T12:28:45,402 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-06-28T12:28:45,403 combination with a more fine grained `package-data` configuration. 2024-06-28T12:28:45,404 You can read more about "package data files" on setuptools documentation page: 2024-06-28T12:28:45,405 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-06-28T12:28:45,407 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-06-28T12:28:45,407 even if it does not contain any `.py` files. 2024-06-28T12:28:45,408 On the other hand, currently there is no concept of package data 2024-06-28T12:28:45,409 directory, all directories are treated like packages. 2024-06-28T12:28:45,409 ******************************************************************************** 2024-06-28T12:28:45,410 !! 2024-06-28T12:28:45,411 check.warn(importable) 2024-06-28T12:28:45,411 /tmp/pip-build-env-0_gg1da7/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'galaxy.tools.bundled.plotting' is absent from the `packages` configuration. 2024-06-28T12:28:45,411 !! 2024-06-28T12:28:45,412 ******************************************************************************** 2024-06-28T12:28:45,412 ############################ 2024-06-28T12:28:45,413 # Package would be ignored # 2024-06-28T12:28:45,413 ############################ 2024-06-28T12:28:45,414 Python recognizes 'galaxy.tools.bundled.plotting' as an importable package[^1], 2024-06-28T12:28:45,414 but it is absent from setuptools' `packages` configuration. 2024-06-28T12:28:45,415 This leads to an ambiguous overall configuration. If you want to distribute this 2024-06-28T12:28:45,415 package, please make sure that 'galaxy.tools.bundled.plotting' is explicitly added 2024-06-28T12:28:45,416 to the `packages` configuration field. 2024-06-28T12:28:45,417 Alternatively, you can also rely on setuptools' discovery methods 2024-06-28T12:28:45,417 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-06-28T12:28:45,418 instead of `find_packages(...)`/`find:`). 2024-06-28T12:28:45,418 You can read more about "package discovery" on setuptools documentation page: 2024-06-28T12:28:45,419 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-06-28T12:28:45,420 If you don't want 'galaxy.tools.bundled.plotting' to be distributed and are 2024-06-28T12:28:45,421 already explicitly excluding 'galaxy.tools.bundled.plotting' via 2024-06-28T12:28:45,421 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-06-28T12:28:45,422 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-06-28T12:28:45,422 combination with a more fine grained `package-data` configuration. 2024-06-28T12:28:45,423 You can read more about "package data files" on setuptools documentation page: 2024-06-28T12:28:45,424 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-06-28T12:28:45,426 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-06-28T12:28:45,426 even if it does not contain any `.py` files. 2024-06-28T12:28:45,427 On the other hand, currently there is no concept of package data 2024-06-28T12:28:45,427 directory, all directories are treated like packages. 2024-06-28T12:28:45,428 ******************************************************************************** 2024-06-28T12:28:45,428 !! 2024-06-28T12:28:45,429 check.warn(importable) 2024-06-28T12:28:45,429 /tmp/pip-build-env-0_gg1da7/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'galaxy.tools.bundled.solid_tools' is absent from the `packages` configuration. 2024-06-28T12:28:45,430 !! 2024-06-28T12:28:45,431 ******************************************************************************** 2024-06-28T12:28:45,431 ############################ 2024-06-28T12:28:45,432 # Package would be ignored # 2024-06-28T12:28:45,433 ############################ 2024-06-28T12:28:45,433 Python recognizes 'galaxy.tools.bundled.solid_tools' as an importable package[^1], 2024-06-28T12:28:45,433 but it is absent from setuptools' `packages` configuration. 2024-06-28T12:28:45,435 This leads to an ambiguous overall configuration. If you want to distribute this 2024-06-28T12:28:45,435 package, please make sure that 'galaxy.tools.bundled.solid_tools' is explicitly added 2024-06-28T12:28:45,436 to the `packages` configuration field. 2024-06-28T12:28:45,437 Alternatively, you can also rely on setuptools' discovery methods 2024-06-28T12:28:45,437 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-06-28T12:28:45,438 instead of `find_packages(...)`/`find:`). 2024-06-28T12:28:45,438 You can read more about "package discovery" on setuptools documentation page: 2024-06-28T12:28:45,439 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-06-28T12:28:45,440 If you don't want 'galaxy.tools.bundled.solid_tools' to be distributed and are 2024-06-28T12:28:45,440 already explicitly excluding 'galaxy.tools.bundled.solid_tools' via 2024-06-28T12:28:45,441 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-06-28T12:28:45,441 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-06-28T12:28:45,442 combination with a more fine grained `package-data` configuration. 2024-06-28T12:28:45,443 You can read more about "package data files" on setuptools documentation page: 2024-06-28T12:28:45,444 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-06-28T12:28:45,445 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-06-28T12:28:45,445 even if it does not contain any `.py` files. 2024-06-28T12:28:45,446 On the other hand, currently there is no concept of package data 2024-06-28T12:28:45,446 directory, all directories are treated like packages. 2024-06-28T12:28:45,447 ******************************************************************************** 2024-06-28T12:28:45,448 !! 2024-06-28T12:28:45,448 check.warn(importable) 2024-06-28T12:28:45,449 /tmp/pip-build-env-0_gg1da7/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'galaxy.tools.bundled.sr_assembly' is absent from the `packages` configuration. 2024-06-28T12:28:45,449 !! 2024-06-28T12:28:45,450 ******************************************************************************** 2024-06-28T12:28:45,451 ############################ 2024-06-28T12:28:45,452 # Package would be ignored # 2024-06-28T12:28:45,452 ############################ 2024-06-28T12:28:45,452 Python recognizes 'galaxy.tools.bundled.sr_assembly' as an importable package[^1], 2024-06-28T12:28:45,453 but it is absent from setuptools' `packages` configuration. 2024-06-28T12:28:45,454 This leads to an ambiguous overall configuration. If you want to distribute this 2024-06-28T12:28:45,455 package, please make sure that 'galaxy.tools.bundled.sr_assembly' is explicitly added 2024-06-28T12:28:45,455 to the `packages` configuration field. 2024-06-28T12:28:45,456 Alternatively, you can also rely on setuptools' discovery methods 2024-06-28T12:28:45,457 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-06-28T12:28:45,457 instead of `find_packages(...)`/`find:`). 2024-06-28T12:28:45,458 You can read more about "package discovery" on setuptools documentation page: 2024-06-28T12:28:45,459 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-06-28T12:28:45,460 If you don't want 'galaxy.tools.bundled.sr_assembly' to be distributed and are 2024-06-28T12:28:45,460 already explicitly excluding 'galaxy.tools.bundled.sr_assembly' via 2024-06-28T12:28:45,461 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-06-28T12:28:45,461 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-06-28T12:28:45,462 combination with a more fine grained `package-data` configuration. 2024-06-28T12:28:45,463 You can read more about "package data files" on setuptools documentation page: 2024-06-28T12:28:45,464 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-06-28T12:28:45,465 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-06-28T12:28:45,466 even if it does not contain any `.py` files. 2024-06-28T12:28:45,466 On the other hand, currently there is no concept of package data 2024-06-28T12:28:45,466 directory, all directories are treated like packages. 2024-06-28T12:28:45,467 ******************************************************************************** 2024-06-28T12:28:45,468 !! 2024-06-28T12:28:45,468 check.warn(importable) 2024-06-28T12:28:45,469 /tmp/pip-build-env-0_gg1da7/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'galaxy.tools.bundled.sr_mapping' is absent from the `packages` configuration. 2024-06-28T12:28:45,469 !! 2024-06-28T12:28:45,470 ******************************************************************************** 2024-06-28T12:28:45,470 ############################ 2024-06-28T12:28:45,471 # Package would be ignored # 2024-06-28T12:28:45,471 ############################ 2024-06-28T12:28:45,471 Python recognizes 'galaxy.tools.bundled.sr_mapping' as an importable package[^1], 2024-06-28T12:28:45,472 but it is absent from setuptools' `packages` configuration. 2024-06-28T12:28:45,473 This leads to an ambiguous overall configuration. If you want to distribute this 2024-06-28T12:28:45,473 package, please make sure that 'galaxy.tools.bundled.sr_mapping' is explicitly added 2024-06-28T12:28:45,474 to the `packages` configuration field. 2024-06-28T12:28:45,475 Alternatively, you can also rely on setuptools' discovery methods 2024-06-28T12:28:45,475 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-06-28T12:28:45,475 instead of `find_packages(...)`/`find:`). 2024-06-28T12:28:45,476 You can read more about "package discovery" on setuptools documentation page: 2024-06-28T12:28:45,477 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-06-28T12:28:45,478 If you don't want 'galaxy.tools.bundled.sr_mapping' to be distributed and are 2024-06-28T12:28:45,479 already explicitly excluding 'galaxy.tools.bundled.sr_mapping' via 2024-06-28T12:28:45,479 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-06-28T12:28:45,480 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-06-28T12:28:45,480 combination with a more fine grained `package-data` configuration. 2024-06-28T12:28:45,481 You can read more about "package data files" on setuptools documentation page: 2024-06-28T12:28:45,482 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-06-28T12:28:45,484 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-06-28T12:28:45,484 even if it does not contain any `.py` files. 2024-06-28T12:28:45,485 On the other hand, currently there is no concept of package data 2024-06-28T12:28:45,486 directory, all directories are treated like packages. 2024-06-28T12:28:45,486 ******************************************************************************** 2024-06-28T12:28:45,487 !! 2024-06-28T12:28:45,487 check.warn(importable) 2024-06-28T12:28:45,488 /tmp/pip-build-env-0_gg1da7/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'galaxy.tools.bundled.stats' is absent from the `packages` configuration. 2024-06-28T12:28:45,489 !! 2024-06-28T12:28:45,489 ******************************************************************************** 2024-06-28T12:28:45,490 ############################ 2024-06-28T12:28:45,491 # Package would be ignored # 2024-06-28T12:28:45,491 ############################ 2024-06-28T12:28:45,491 Python recognizes 'galaxy.tools.bundled.stats' as an importable package[^1], 2024-06-28T12:28:45,492 but it is absent from setuptools' `packages` configuration. 2024-06-28T12:28:45,493 This leads to an ambiguous overall configuration. If you want to distribute this 2024-06-28T12:28:45,493 package, please make sure that 'galaxy.tools.bundled.stats' is explicitly added 2024-06-28T12:28:45,494 to the `packages` configuration field. 2024-06-28T12:28:45,494 Alternatively, you can also rely on setuptools' discovery methods 2024-06-28T12:28:45,495 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-06-28T12:28:45,495 instead of `find_packages(...)`/`find:`). 2024-06-28T12:28:45,496 You can read more about "package discovery" on setuptools documentation page: 2024-06-28T12:28:45,497 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-06-28T12:28:45,498 If you don't want 'galaxy.tools.bundled.stats' to be distributed and are 2024-06-28T12:28:45,498 already explicitly excluding 'galaxy.tools.bundled.stats' via 2024-06-28T12:28:45,499 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-06-28T12:28:45,499 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-06-28T12:28:45,499 combination with a more fine grained `package-data` configuration. 2024-06-28T12:28:45,500 You can read more about "package data files" on setuptools documentation page: 2024-06-28T12:28:45,501 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-06-28T12:28:45,503 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-06-28T12:28:45,503 even if it does not contain any `.py` files. 2024-06-28T12:28:45,504 On the other hand, currently there is no concept of package data 2024-06-28T12:28:45,504 directory, all directories are treated like packages. 2024-06-28T12:28:45,505 ******************************************************************************** 2024-06-28T12:28:45,505 !! 2024-06-28T12:28:45,506 check.warn(importable) 2024-06-28T12:28:45,506 copying galaxy/py.typed -> build/lib/galaxy 2024-06-28T12:28:45,507 copying galaxy_ext/py.typed -> build/lib/galaxy_ext 2024-06-28T12:28:45,507 copying tool_shed_client/py.typed -> build/lib/tool_shed_client 2024-06-28T12:28:45,508 copying galaxy/managers/licenses.json -> build/lib/galaxy/managers 2024-06-28T12:28:45,508 copying galaxy/managers/markdown_export_base.css -> build/lib/galaxy/managers 2024-06-28T12:28:45,509 copying galaxy/tools/apply_rules.xml -> build/lib/galaxy/tools 2024-06-28T12:28:45,510 copying galaxy/tools/build_list.xml -> build/lib/galaxy/tools 2024-06-28T12:28:45,510 copying galaxy/tools/build_list_1.2.0.xml -> build/lib/galaxy/tools 2024-06-28T12:28:45,511 copying galaxy/tools/data_fetch.xml -> build/lib/galaxy/tools 2024-06-28T12:28:45,511 copying galaxy/tools/duplicate_file_to_collection.xml -> build/lib/galaxy/tools 2024-06-28T12:28:45,512 copying galaxy/tools/extract_dataset.xml -> build/lib/galaxy/tools 2024-06-28T12:28:45,512 copying galaxy/tools/filter_empty_collection.xml -> build/lib/galaxy/tools 2024-06-28T12:28:45,513 copying galaxy/tools/filter_failed_collection.xml -> build/lib/galaxy/tools 2024-06-28T12:28:45,513 copying galaxy/tools/filter_from_file.xml -> build/lib/galaxy/tools 2024-06-28T12:28:45,514 copying galaxy/tools/flatten_collection.xml -> build/lib/galaxy/tools 2024-06-28T12:28:45,514 copying galaxy/tools/harmonize_two_collections_list.xml -> build/lib/galaxy/tools 2024-06-28T12:28:45,515 copying galaxy/tools/keep_success_collection.xml -> build/lib/galaxy/tools 2024-06-28T12:28:45,516 copying galaxy/tools/merge_collection.xml -> build/lib/galaxy/tools 2024-06-28T12:28:45,516 copying galaxy/tools/relabel_from_file.xml -> build/lib/galaxy/tools 2024-06-28T12:28:45,517 copying galaxy/tools/sort_collection_list.xml -> build/lib/galaxy/tools 2024-06-28T12:28:45,517 copying galaxy/tools/tag_collection_from_file.xml -> build/lib/galaxy/tools 2024-06-28T12:28:45,518 copying galaxy/tools/unzip_collection.xml -> build/lib/galaxy/tools 2024-06-28T12:28:45,518 copying galaxy/tools/zip_collection.xml -> build/lib/galaxy/tools 2024-06-28T12:28:45,519 creating build/lib/galaxy/tools/bundled 2024-06-28T12:28:45,519 copying galaxy/tools/bundled/__init__.py -> build/lib/galaxy/tools/bundled 2024-06-28T12:28:45,520 creating build/lib/galaxy/tools/bundled/data_export 2024-06-28T12:28:45,520 copying galaxy/tools/bundled/data_export/export_remote.py -> build/lib/galaxy/tools/bundled/data_export 2024-06-28T12:28:45,520 copying galaxy/tools/bundled/data_export/export_remote.xml -> build/lib/galaxy/tools/bundled/data_export 2024-06-28T12:28:45,521 copying galaxy/tools/bundled/data_export/send.py -> build/lib/galaxy/tools/bundled/data_export 2024-06-28T12:28:45,522 copying galaxy/tools/bundled/data_export/send.xml -> build/lib/galaxy/tools/bundled/data_export 2024-06-28T12:28:45,522 creating build/lib/galaxy/tools/bundled/data_source 2024-06-28T12:28:45,522 copying galaxy/tools/bundled/data_source/__init__.py -> build/lib/galaxy/tools/bundled/data_source 2024-06-28T12:28:45,523 copying galaxy/tools/bundled/data_source/access_libraries.xml -> build/lib/galaxy/tools/bundled/data_source 2024-06-28T12:28:45,523 copying galaxy/tools/bundled/data_source/biomart.xml -> build/lib/galaxy/tools/bundled/data_source 2024-06-28T12:28:45,524 copying galaxy/tools/bundled/data_source/biomart_test.xml -> build/lib/galaxy/tools/bundled/data_source 2024-06-28T12:28:45,524 copying galaxy/tools/bundled/data_source/cbi_rice_mart.xml -> build/lib/galaxy/tools/bundled/data_source 2024-06-28T12:28:45,525 copying galaxy/tools/bundled/data_source/data_source.py -> build/lib/galaxy/tools/bundled/data_source 2024-06-28T12:28:45,525 copying galaxy/tools/bundled/data_source/ebi_sra.xml -> build/lib/galaxy/tools/bundled/data_source 2024-06-28T12:28:45,526 copying galaxy/tools/bundled/data_source/eupathdb.xml -> build/lib/galaxy/tools/bundled/data_source 2024-06-28T12:28:45,527 copying galaxy/tools/bundled/data_source/fly_modencode.xml -> build/lib/galaxy/tools/bundled/data_source 2024-06-28T12:28:45,527 copying galaxy/tools/bundled/data_source/flymine.xml -> build/lib/galaxy/tools/bundled/data_source 2024-06-28T12:28:45,528 copying galaxy/tools/bundled/data_source/flymine_test.xml -> build/lib/galaxy/tools/bundled/data_source 2024-06-28T12:28:45,528 copying galaxy/tools/bundled/data_source/genbank.py -> build/lib/galaxy/tools/bundled/data_source 2024-06-28T12:28:45,529 copying galaxy/tools/bundled/data_source/genbank.xml -> build/lib/galaxy/tools/bundled/data_source 2024-06-28T12:28:45,530 copying galaxy/tools/bundled/data_source/gramene_mart.xml -> build/lib/galaxy/tools/bundled/data_source 2024-06-28T12:28:45,530 copying galaxy/tools/bundled/data_source/hapmapmart.xml -> build/lib/galaxy/tools/bundled/data_source 2024-06-28T12:28:45,530 copying galaxy/tools/bundled/data_source/hbvar.xml -> build/lib/galaxy/tools/bundled/data_source 2024-06-28T12:28:45,531 copying galaxy/tools/bundled/data_source/import.py -> build/lib/galaxy/tools/bundled/data_source 2024-06-28T12:28:45,531 copying galaxy/tools/bundled/data_source/import.xml -> build/lib/galaxy/tools/bundled/data_source 2024-06-28T12:28:45,532 copying galaxy/tools/bundled/data_source/intermine.xml -> build/lib/galaxy/tools/bundled/data_source 2024-06-28T12:28:45,532 copying galaxy/tools/bundled/data_source/metabolicmine.xml -> build/lib/galaxy/tools/bundled/data_source 2024-06-28T12:28:45,533 copying galaxy/tools/bundled/data_source/microbial_import.py -> build/lib/galaxy/tools/bundled/data_source 2024-06-28T12:28:45,534 copying galaxy/tools/bundled/data_source/microbial_import.xml -> build/lib/galaxy/tools/bundled/data_source 2024-06-28T12:28:45,534 copying galaxy/tools/bundled/data_source/microbial_import_code.py -> build/lib/galaxy/tools/bundled/data_source 2024-06-28T12:28:45,535 copying galaxy/tools/bundled/data_source/modmine.xml -> build/lib/galaxy/tools/bundled/data_source 2024-06-28T12:28:45,535 copying galaxy/tools/bundled/data_source/mousemine.xml -> build/lib/galaxy/tools/bundled/data_source 2024-06-28T12:28:45,535 copying galaxy/tools/bundled/data_source/ncbi_datasets.xml -> build/lib/galaxy/tools/bundled/data_source 2024-06-28T12:28:45,536 copying galaxy/tools/bundled/data_source/ratmine.xml -> build/lib/galaxy/tools/bundled/data_source 2024-06-28T12:28:45,536 copying galaxy/tools/bundled/data_source/sra.xml -> build/lib/galaxy/tools/bundled/data_source 2024-06-28T12:28:45,537 copying galaxy/tools/bundled/data_source/ucsc_tablebrowser.xml -> build/lib/galaxy/tools/bundled/data_source 2024-06-28T12:28:45,537 copying galaxy/tools/bundled/data_source/ucsc_tablebrowser_archaea.xml -> build/lib/galaxy/tools/bundled/data_source 2024-06-28T12:28:45,537 copying galaxy/tools/bundled/data_source/ucsc_tablebrowser_test.xml -> build/lib/galaxy/tools/bundled/data_source 2024-06-28T12:28:45,538 copying galaxy/tools/bundled/data_source/upload.py -> build/lib/galaxy/tools/bundled/data_source 2024-06-28T12:28:45,538 copying galaxy/tools/bundled/data_source/upload.xml -> build/lib/galaxy/tools/bundled/data_source 2024-06-28T12:28:45,539 copying galaxy/tools/bundled/data_source/worm_modencode.xml -> build/lib/galaxy/tools/bundled/data_source 2024-06-28T12:28:45,539 copying galaxy/tools/bundled/data_source/wormbase.xml -> build/lib/galaxy/tools/bundled/data_source 2024-06-28T12:28:45,540 copying galaxy/tools/bundled/data_source/wormbase_test.xml -> build/lib/galaxy/tools/bundled/data_source 2024-06-28T12:28:45,540 copying galaxy/tools/bundled/data_source/yeastmine.xml -> build/lib/galaxy/tools/bundled/data_source 2024-06-28T12:28:45,541 copying galaxy/tools/bundled/data_source/zebrafishmine.xml -> build/lib/galaxy/tools/bundled/data_source 2024-06-28T12:28:45,541 creating build/lib/galaxy/tools/bundled/expression_tools 2024-06-28T12:28:45,542 copying galaxy/tools/bundled/expression_tools/expression_macros.xml -> build/lib/galaxy/tools/bundled/expression_tools 2024-06-28T12:28:45,542 copying galaxy/tools/bundled/expression_tools/parse_values_from_file.xml -> build/lib/galaxy/tools/bundled/expression_tools 2024-06-28T12:28:45,542 copying galaxy/tools/bundled/expression_tools/pick_value.xml -> build/lib/galaxy/tools/bundled/expression_tools 2024-06-28T12:28:45,543 creating build/lib/galaxy/tools/bundled/extract 2024-06-28T12:28:45,543 copying galaxy/tools/bundled/extract/__init__.py -> build/lib/galaxy/tools/bundled/extract 2024-06-28T12:28:45,544 copying galaxy/tools/bundled/extract/extract_genomic_dna.py -> build/lib/galaxy/tools/bundled/extract 2024-06-28T12:28:45,544 copying galaxy/tools/bundled/extract/extract_genomic_dna.xml -> build/lib/galaxy/tools/bundled/extract 2024-06-28T12:28:45,545 copying galaxy/tools/bundled/extract/liftOver_wrapper.py -> build/lib/galaxy/tools/bundled/extract 2024-06-28T12:28:45,546 copying galaxy/tools/bundled/extract/liftOver_wrapper.xml -> build/lib/galaxy/tools/bundled/extract 2024-06-28T12:28:45,546 creating build/lib/galaxy/tools/bundled/filters 2024-06-28T12:28:45,546 copying galaxy/tools/bundled/filters/CreateInterval.pl -> build/lib/galaxy/tools/bundled/filters 2024-06-28T12:28:45,547 copying galaxy/tools/bundled/filters/CreateInterval.xml -> build/lib/galaxy/tools/bundled/filters 2024-06-28T12:28:45,547 copying galaxy/tools/bundled/filters/__init__.py -> build/lib/galaxy/tools/bundled/filters 2024-06-28T12:28:45,548 copying galaxy/tools/bundled/filters/axt_to_concat_fasta.py -> build/lib/galaxy/tools/bundled/filters 2024-06-28T12:28:45,549 copying galaxy/tools/bundled/filters/axt_to_concat_fasta.xml -> build/lib/galaxy/tools/bundled/filters 2024-06-28T12:28:45,549 copying galaxy/tools/bundled/filters/axt_to_fasta.py -> build/lib/galaxy/tools/bundled/filters 2024-06-28T12:28:45,550 copying galaxy/tools/bundled/filters/axt_to_fasta.xml -> build/lib/galaxy/tools/bundled/filters 2024-06-28T12:28:45,550 copying galaxy/tools/bundled/filters/axt_to_lav.py -> build/lib/galaxy/tools/bundled/filters 2024-06-28T12:28:45,550 copying galaxy/tools/bundled/filters/axt_to_lav.xml -> build/lib/galaxy/tools/bundled/filters 2024-06-28T12:28:45,551 copying galaxy/tools/bundled/filters/axt_to_lav_code.py -> build/lib/galaxy/tools/bundled/filters 2024-06-28T12:28:45,551 copying galaxy/tools/bundled/filters/bed2gff.xml -> build/lib/galaxy/tools/bundled/filters 2024-06-28T12:28:45,552 copying galaxy/tools/bundled/filters/bed_to_bigbed.xml -> build/lib/galaxy/tools/bundled/filters 2024-06-28T12:28:45,552 copying galaxy/tools/bundled/filters/bed_to_gff_converter.py -> build/lib/galaxy/tools/bundled/filters 2024-06-28T12:28:45,552 copying galaxy/tools/bundled/filters/catWrapper.py -> build/lib/galaxy/tools/bundled/filters 2024-06-28T12:28:45,553 copying galaxy/tools/bundled/filters/catWrapper.xml -> build/lib/galaxy/tools/bundled/filters 2024-06-28T12:28:45,553 copying galaxy/tools/bundled/filters/changeCase.pl -> build/lib/galaxy/tools/bundled/filters 2024-06-28T12:28:45,554 copying galaxy/tools/bundled/filters/changeCase.xml -> build/lib/galaxy/tools/bundled/filters 2024-06-28T12:28:45,554 copying galaxy/tools/bundled/filters/commWrapper.pl -> build/lib/galaxy/tools/bundled/filters 2024-06-28T12:28:45,555 copying galaxy/tools/bundled/filters/commWrapper.xml -> build/lib/galaxy/tools/bundled/filters 2024-06-28T12:28:45,556 copying galaxy/tools/bundled/filters/compare.xml -> build/lib/galaxy/tools/bundled/filters 2024-06-28T12:28:45,556 copying galaxy/tools/bundled/filters/condense_characters.pl -> build/lib/galaxy/tools/bundled/filters 2024-06-28T12:28:45,556 copying galaxy/tools/bundled/filters/condense_characters.xml -> build/lib/galaxy/tools/bundled/filters 2024-06-28T12:28:45,557 copying galaxy/tools/bundled/filters/convert_characters.py -> build/lib/galaxy/tools/bundled/filters 2024-06-28T12:28:45,557 copying galaxy/tools/bundled/filters/convert_characters.xml -> build/lib/galaxy/tools/bundled/filters 2024-06-28T12:28:45,558 copying galaxy/tools/bundled/filters/cutWrapper.pl -> build/lib/galaxy/tools/bundled/filters 2024-06-28T12:28:45,558 copying galaxy/tools/bundled/filters/cutWrapper.xml -> build/lib/galaxy/tools/bundled/filters 2024-06-28T12:28:45,559 copying galaxy/tools/bundled/filters/fileGrep.xml -> build/lib/galaxy/tools/bundled/filters 2024-06-28T12:28:45,559 copying galaxy/tools/bundled/filters/fixedValueColumn.pl -> build/lib/galaxy/tools/bundled/filters 2024-06-28T12:28:45,560 copying galaxy/tools/bundled/filters/fixedValueColumn.xml -> build/lib/galaxy/tools/bundled/filters 2024-06-28T12:28:45,560 copying galaxy/tools/bundled/filters/gff2bed.xml -> build/lib/galaxy/tools/bundled/filters 2024-06-28T12:28:45,561 copying galaxy/tools/bundled/filters/gff_to_bed_converter.py -> build/lib/galaxy/tools/bundled/filters 2024-06-28T12:28:45,561 copying galaxy/tools/bundled/filters/grep.py -> build/lib/galaxy/tools/bundled/filters 2024-06-28T12:28:45,562 copying galaxy/tools/bundled/filters/grep.xml -> build/lib/galaxy/tools/bundled/filters 2024-06-28T12:28:45,562 copying galaxy/tools/bundled/filters/grep_1.0.1.xml -> build/lib/galaxy/tools/bundled/filters 2024-06-28T12:28:45,563 copying galaxy/tools/bundled/filters/gtf2bedgraph.xml -> build/lib/galaxy/tools/bundled/filters 2024-06-28T12:28:45,563 copying galaxy/tools/bundled/filters/gtf_to_bedgraph_converter.py -> build/lib/galaxy/tools/bundled/filters 2024-06-28T12:28:45,564 copying galaxy/tools/bundled/filters/headWrapper.xml -> build/lib/galaxy/tools/bundled/filters 2024-06-28T12:28:45,564 copying galaxy/tools/bundled/filters/join.py -> build/lib/galaxy/tools/bundled/filters 2024-06-28T12:28:45,565 copying galaxy/tools/bundled/filters/joinWrapper.py -> build/lib/galaxy/tools/bundled/filters 2024-06-28T12:28:45,566 copying galaxy/tools/bundled/filters/joiner.xml -> build/lib/galaxy/tools/bundled/filters 2024-06-28T12:28:45,566 copying galaxy/tools/bundled/filters/joiner2.xml -> build/lib/galaxy/tools/bundled/filters 2024-06-28T12:28:45,566 copying galaxy/tools/bundled/filters/lav_to_bed.py -> build/lib/galaxy/tools/bundled/filters 2024-06-28T12:28:45,567 copying galaxy/tools/bundled/filters/lav_to_bed.xml -> build/lib/galaxy/tools/bundled/filters 2024-06-28T12:28:45,567 copying galaxy/tools/bundled/filters/lav_to_bed_code.py -> build/lib/galaxy/tools/bundled/filters 2024-06-28T12:28:45,568 copying galaxy/tools/bundled/filters/mergeCols.py -> build/lib/galaxy/tools/bundled/filters 2024-06-28T12:28:45,568 copying galaxy/tools/bundled/filters/mergeCols.xml -> build/lib/galaxy/tools/bundled/filters 2024-06-28T12:28:45,568 copying galaxy/tools/bundled/filters/pasteWrapper.pl -> build/lib/galaxy/tools/bundled/filters 2024-06-28T12:28:45,569 copying galaxy/tools/bundled/filters/pasteWrapper.xml -> build/lib/galaxy/tools/bundled/filters 2024-06-28T12:28:45,569 copying galaxy/tools/bundled/filters/random_lines_two_pass.py -> build/lib/galaxy/tools/bundled/filters 2024-06-28T12:28:45,570 copying galaxy/tools/bundled/filters/randomlines.py -> build/lib/galaxy/tools/bundled/filters 2024-06-28T12:28:45,570 copying galaxy/tools/bundled/filters/randomlines.xml -> build/lib/galaxy/tools/bundled/filters 2024-06-28T12:28:45,571 copying galaxy/tools/bundled/filters/remove_beginning.pl -> build/lib/galaxy/tools/bundled/filters 2024-06-28T12:28:45,571 copying galaxy/tools/bundled/filters/remove_beginning.xml -> build/lib/galaxy/tools/bundled/filters 2024-06-28T12:28:45,571 copying galaxy/tools/bundled/filters/secure_hash_message_digest.py -> build/lib/galaxy/tools/bundled/filters 2024-06-28T12:28:45,572 copying galaxy/tools/bundled/filters/secure_hash_message_digest.xml -> build/lib/galaxy/tools/bundled/filters 2024-06-28T12:28:45,572 copying galaxy/tools/bundled/filters/sff_extract.py -> build/lib/galaxy/tools/bundled/filters 2024-06-28T12:28:45,573 copying galaxy/tools/bundled/filters/sff_extractor.xml -> build/lib/galaxy/tools/bundled/filters 2024-06-28T12:28:45,573 copying galaxy/tools/bundled/filters/sorter.py -> build/lib/galaxy/tools/bundled/filters 2024-06-28T12:28:45,574 copying galaxy/tools/bundled/filters/sorter.xml -> build/lib/galaxy/tools/bundled/filters 2024-06-28T12:28:45,574 copying galaxy/tools/bundled/filters/tailWrapper.xml -> build/lib/galaxy/tools/bundled/filters 2024-06-28T12:28:45,575 copying galaxy/tools/bundled/filters/trimmer.py -> build/lib/galaxy/tools/bundled/filters 2024-06-28T12:28:45,575 copying galaxy/tools/bundled/filters/trimmer.xml -> build/lib/galaxy/tools/bundled/filters 2024-06-28T12:28:45,576 copying galaxy/tools/bundled/filters/ucsc_gene_bed_to_exon_bed.py -> build/lib/galaxy/tools/bundled/filters 2024-06-28T12:28:45,576 copying galaxy/tools/bundled/filters/ucsc_gene_bed_to_exon_bed.xml -> build/lib/galaxy/tools/bundled/filters 2024-06-28T12:28:45,577 copying galaxy/tools/bundled/filters/ucsc_gene_bed_to_intron_bed.py -> build/lib/galaxy/tools/bundled/filters 2024-06-28T12:28:45,577 copying galaxy/tools/bundled/filters/ucsc_gene_bed_to_intron_bed.xml -> build/lib/galaxy/tools/bundled/filters 2024-06-28T12:28:45,578 copying galaxy/tools/bundled/filters/ucsc_gene_table_to_intervals.py -> build/lib/galaxy/tools/bundled/filters 2024-06-28T12:28:45,578 copying galaxy/tools/bundled/filters/ucsc_gene_table_to_intervals.xml -> build/lib/galaxy/tools/bundled/filters 2024-06-28T12:28:45,579 copying galaxy/tools/bundled/filters/uniq.py -> build/lib/galaxy/tools/bundled/filters 2024-06-28T12:28:45,579 copying galaxy/tools/bundled/filters/uniq.xml -> build/lib/galaxy/tools/bundled/filters 2024-06-28T12:28:45,580 copying galaxy/tools/bundled/filters/wc_gnu.xml -> build/lib/galaxy/tools/bundled/filters 2024-06-28T12:28:45,581 copying galaxy/tools/bundled/filters/wig_to_bigwig.xml -> build/lib/galaxy/tools/bundled/filters 2024-06-28T12:28:45,581 copying galaxy/tools/bundled/filters/wiggle_to_simple.py -> build/lib/galaxy/tools/bundled/filters 2024-06-28T12:28:45,582 copying galaxy/tools/bundled/filters/wiggle_to_simple.xml -> build/lib/galaxy/tools/bundled/filters 2024-06-28T12:28:45,582 creating build/lib/galaxy/tools/bundled/filters/gff 2024-06-28T12:28:45,583 copying galaxy/tools/bundled/filters/gff/__init__.py -> build/lib/galaxy/tools/bundled/filters/gff 2024-06-28T12:28:45,583 copying galaxy/tools/bundled/filters/gff/extract_GFF_Features.py -> build/lib/galaxy/tools/bundled/filters/gff 2024-06-28T12:28:45,584 copying galaxy/tools/bundled/filters/gff/extract_GFF_Features.xml -> build/lib/galaxy/tools/bundled/filters/gff 2024-06-28T12:28:45,584 copying galaxy/tools/bundled/filters/gff/gff_filter_by_attribute.py -> build/lib/galaxy/tools/bundled/filters/gff 2024-06-28T12:28:45,585 copying galaxy/tools/bundled/filters/gff/gff_filter_by_attribute.xml -> build/lib/galaxy/tools/bundled/filters/gff 2024-06-28T12:28:45,586 copying galaxy/tools/bundled/filters/gff/gff_filter_by_feature_count.py -> build/lib/galaxy/tools/bundled/filters/gff 2024-06-28T12:28:45,588 copying galaxy/tools/bundled/filters/gff/gff_filter_by_feature_count.xml -> build/lib/galaxy/tools/bundled/filters/gff 2024-06-28T12:28:45,590 copying galaxy/tools/bundled/filters/gff/gtf_filter_by_attribute_values_list.py -> build/lib/galaxy/tools/bundled/filters/gff 2024-06-28T12:28:45,592 copying galaxy/tools/bundled/filters/gff/gtf_filter_by_attribute_values_list.xml -> build/lib/galaxy/tools/bundled/filters/gff 2024-06-28T12:28:45,594 creating build/lib/galaxy/tools/bundled/interactive 2024-06-28T12:28:45,595 copying galaxy/tools/bundled/interactive/default_notebook.ipynb -> build/lib/galaxy/tools/bundled/interactive 2024-06-28T12:28:45,597 copying galaxy/tools/bundled/interactive/interactivetool_askomics.xml -> build/lib/galaxy/tools/bundled/interactive 2024-06-28T12:28:45,600 copying galaxy/tools/bundled/interactive/interactivetool_bam_iobio.xml -> build/lib/galaxy/tools/bundled/interactive 2024-06-28T12:28:45,602 copying galaxy/tools/bundled/interactive/interactivetool_cellxgene_0.16.2.xml -> build/lib/galaxy/tools/bundled/interactive 2024-06-28T12:28:45,603 copying galaxy/tools/bundled/interactive/interactivetool_cellxgene_1.1.1.xml -> build/lib/galaxy/tools/bundled/interactive 2024-06-28T12:28:45,606 copying galaxy/tools/bundled/interactive/interactivetool_climate_notebook.xml -> build/lib/galaxy/tools/bundled/interactive 2024-06-28T12:28:45,608 copying galaxy/tools/bundled/interactive/interactivetool_ethercalc.xml -> build/lib/galaxy/tools/bundled/interactive 2024-06-28T12:28:45,610 copying galaxy/tools/bundled/interactive/interactivetool_geoexplorer.xml -> build/lib/galaxy/tools/bundled/interactive 2024-06-28T12:28:45,612 copying galaxy/tools/bundled/interactive/interactivetool_guacamole_desktop.xml -> build/lib/galaxy/tools/bundled/interactive 2024-06-28T12:28:45,614 copying galaxy/tools/bundled/interactive/interactivetool_hicbrowser.xml -> build/lib/galaxy/tools/bundled/interactive 2024-06-28T12:28:45,616 copying galaxy/tools/bundled/interactive/interactivetool_higlass.xml -> build/lib/galaxy/tools/bundled/interactive 2024-06-28T12:28:45,618 copying galaxy/tools/bundled/interactive/interactivetool_isee.xml -> build/lib/galaxy/tools/bundled/interactive 2024-06-28T12:28:45,621 copying galaxy/tools/bundled/interactive/interactivetool_jupyter_notebook.xml -> build/lib/galaxy/tools/bundled/interactive 2024-06-28T12:28:45,623 copying galaxy/tools/bundled/interactive/interactivetool_jupyter_notebook_1.0.0.xml -> build/lib/galaxy/tools/bundled/interactive 2024-06-28T12:28:45,626 copying galaxy/tools/bundled/interactive/interactivetool_metashark.xml -> build/lib/galaxy/tools/bundled/interactive 2024-06-28T12:28:45,628 copying galaxy/tools/bundled/interactive/interactivetool_mgnify_notebook.xml -> build/lib/galaxy/tools/bundled/interactive 2024-06-28T12:28:45,630 copying galaxy/tools/bundled/interactive/interactivetool_ml_jupyter_notebook.xml -> build/lib/galaxy/tools/bundled/interactive 2024-06-28T12:28:45,633 copying galaxy/tools/bundled/interactive/interactivetool_neo4j.xml -> build/lib/galaxy/tools/bundled/interactive 2024-06-28T12:28:45,635 copying galaxy/tools/bundled/interactive/interactivetool_openrefine.xml -> build/lib/galaxy/tools/bundled/interactive 2024-06-28T12:28:45,637 copying galaxy/tools/bundled/interactive/interactivetool_pangeo_notebook.xml -> build/lib/galaxy/tools/bundled/interactive 2024-06-28T12:28:45,639 copying galaxy/tools/bundled/interactive/interactivetool_panoply.xml -> build/lib/galaxy/tools/bundled/interactive 2024-06-28T12:28:45,641 copying galaxy/tools/bundled/interactive/interactivetool_paraview.xml -> build/lib/galaxy/tools/bundled/interactive 2024-06-28T12:28:45,643 copying galaxy/tools/bundled/interactive/interactivetool_pavian.xml -> build/lib/galaxy/tools/bundled/interactive 2024-06-28T12:28:45,645 copying galaxy/tools/bundled/interactive/interactivetool_phinch.xml -> build/lib/galaxy/tools/bundled/interactive 2024-06-28T12:28:45,647 copying galaxy/tools/bundled/interactive/interactivetool_pyiron.xml -> build/lib/galaxy/tools/bundled/interactive 2024-06-28T12:28:45,649 copying galaxy/tools/bundled/interactive/interactivetool_qiskit_jupyter_notebook.xml -> build/lib/galaxy/tools/bundled/interactive 2024-06-28T12:28:45,652 copying galaxy/tools/bundled/interactive/interactivetool_radiant.xml -> build/lib/galaxy/tools/bundled/interactive 2024-06-28T12:28:45,653 copying galaxy/tools/bundled/interactive/interactivetool_rstudio.xml -> build/lib/galaxy/tools/bundled/interactive 2024-06-28T12:28:45,655 copying galaxy/tools/bundled/interactive/interactivetool_simtext_app.xml -> build/lib/galaxy/tools/bundled/interactive 2024-06-28T12:28:45,657 copying galaxy/tools/bundled/interactive/interactivetool_vcf_iobio.xml -> build/lib/galaxy/tools/bundled/interactive 2024-06-28T12:28:45,659 copying galaxy/tools/bundled/interactive/interactivetool_vrm_editor.xml -> build/lib/galaxy/tools/bundled/interactive 2024-06-28T12:28:45,661 copying galaxy/tools/bundled/interactive/interactivetool_wallace.xml -> build/lib/galaxy/tools/bundled/interactive 2024-06-28T12:28:45,663 copying galaxy/tools/bundled/interactive/interactivetool_wilson.xml -> build/lib/galaxy/tools/bundled/interactive 2024-06-28T12:28:45,665 copying galaxy/tools/bundled/interactive/simtext_app.R -> build/lib/galaxy/tools/bundled/interactive 2024-06-28T12:28:45,668 creating build/lib/galaxy/tools/bundled/maf 2024-06-28T12:28:45,669 copying galaxy/tools/bundled/maf/__init__.py -> build/lib/galaxy/tools/bundled/maf 2024-06-28T12:28:45,671 copying galaxy/tools/bundled/maf/genebed_maf_to_fasta.xml -> build/lib/galaxy/tools/bundled/maf 2024-06-28T12:28:45,673 copying galaxy/tools/bundled/maf/interval2maf.py -> build/lib/galaxy/tools/bundled/maf 2024-06-28T12:28:45,676 copying galaxy/tools/bundled/maf/interval2maf.xml -> build/lib/galaxy/tools/bundled/maf 2024-06-28T12:28:45,678 copying galaxy/tools/bundled/maf/interval2maf_pairwise.xml -> build/lib/galaxy/tools/bundled/maf 2024-06-28T12:28:45,680 copying galaxy/tools/bundled/maf/interval_maf_to_merged_fasta.py -> build/lib/galaxy/tools/bundled/maf 2024-06-28T12:28:45,683 copying galaxy/tools/bundled/maf/interval_maf_to_merged_fasta.xml -> build/lib/galaxy/tools/bundled/maf 2024-06-28T12:28:45,685 copying galaxy/tools/bundled/maf/macros.xml -> build/lib/galaxy/tools/bundled/maf 2024-06-28T12:28:45,687 copying galaxy/tools/bundled/maf/maf_by_block_number.py -> build/lib/galaxy/tools/bundled/maf 2024-06-28T12:28:45,689 copying galaxy/tools/bundled/maf/maf_by_block_number.xml -> build/lib/galaxy/tools/bundled/maf 2024-06-28T12:28:45,691 copying galaxy/tools/bundled/maf/maf_filter.py -> build/lib/galaxy/tools/bundled/maf 2024-06-28T12:28:45,693 copying galaxy/tools/bundled/maf/maf_filter.xml -> build/lib/galaxy/tools/bundled/maf 2024-06-28T12:28:45,695 copying galaxy/tools/bundled/maf/maf_limit_size.py -> build/lib/galaxy/tools/bundled/maf 2024-06-28T12:28:45,697 copying galaxy/tools/bundled/maf/maf_limit_size.xml -> build/lib/galaxy/tools/bundled/maf 2024-06-28T12:28:45,699 copying galaxy/tools/bundled/maf/maf_limit_to_species.py -> build/lib/galaxy/tools/bundled/maf 2024-06-28T12:28:45,701 copying galaxy/tools/bundled/maf/maf_limit_to_species.xml -> build/lib/galaxy/tools/bundled/maf 2024-06-28T12:28:45,703 copying galaxy/tools/bundled/maf/maf_reverse_complement.py -> build/lib/galaxy/tools/bundled/maf 2024-06-28T12:28:45,705 copying galaxy/tools/bundled/maf/maf_reverse_complement.xml -> build/lib/galaxy/tools/bundled/maf 2024-06-28T12:28:45,707 copying galaxy/tools/bundled/maf/maf_split_by_species.py -> build/lib/galaxy/tools/bundled/maf 2024-06-28T12:28:45,709 copying galaxy/tools/bundled/maf/maf_split_by_species.xml -> build/lib/galaxy/tools/bundled/maf 2024-06-28T12:28:45,711 copying galaxy/tools/bundled/maf/maf_stats.py -> build/lib/galaxy/tools/bundled/maf 2024-06-28T12:28:45,714 copying galaxy/tools/bundled/maf/maf_stats.xml -> build/lib/galaxy/tools/bundled/maf 2024-06-28T12:28:45,716 copying galaxy/tools/bundled/maf/maf_thread_for_species.py -> build/lib/galaxy/tools/bundled/maf 2024-06-28T12:28:45,718 copying galaxy/tools/bundled/maf/maf_thread_for_species.xml -> build/lib/galaxy/tools/bundled/maf 2024-06-28T12:28:45,720 copying galaxy/tools/bundled/maf/maf_to_bed.py -> build/lib/galaxy/tools/bundled/maf 2024-06-28T12:28:45,722 copying galaxy/tools/bundled/maf/maf_to_bed.xml -> build/lib/galaxy/tools/bundled/maf 2024-06-28T12:28:45,724 copying galaxy/tools/bundled/maf/maf_to_bed_code.py -> build/lib/galaxy/tools/bundled/maf 2024-06-28T12:28:45,726 copying galaxy/tools/bundled/maf/maf_to_fasta.xml -> build/lib/galaxy/tools/bundled/maf 2024-06-28T12:28:45,728 copying galaxy/tools/bundled/maf/maf_to_fasta_concat.py -> build/lib/galaxy/tools/bundled/maf 2024-06-28T12:28:45,730 copying galaxy/tools/bundled/maf/maf_to_fasta_multiple_sets.py -> build/lib/galaxy/tools/bundled/maf 2024-06-28T12:28:45,732 copying galaxy/tools/bundled/maf/maf_to_interval.py -> build/lib/galaxy/tools/bundled/maf 2024-06-28T12:28:45,734 copying galaxy/tools/bundled/maf/maf_to_interval.xml -> build/lib/galaxy/tools/bundled/maf 2024-06-28T12:28:45,737 copying galaxy/tools/bundled/maf/vcf_to_maf_customtrack.py -> build/lib/galaxy/tools/bundled/maf 2024-06-28T12:28:45,739 copying galaxy/tools/bundled/maf/vcf_to_maf_customtrack.xml -> build/lib/galaxy/tools/bundled/maf 2024-06-28T12:28:45,742 creating build/lib/galaxy/tools/bundled/meme 2024-06-28T12:28:45,742 copying galaxy/tools/bundled/meme/__init__.py -> build/lib/galaxy/tools/bundled/meme 2024-06-28T12:28:45,744 copying galaxy/tools/bundled/meme/fimo.xml -> build/lib/galaxy/tools/bundled/meme 2024-06-28T12:28:45,747 copying galaxy/tools/bundled/meme/fimo_wrapper.py -> build/lib/galaxy/tools/bundled/meme 2024-06-28T12:28:45,749 copying galaxy/tools/bundled/meme/meme.xml -> build/lib/galaxy/tools/bundled/meme 2024-06-28T12:28:45,751 creating build/lib/galaxy/tools/bundled/metag_tools 2024-06-28T12:28:45,752 copying galaxy/tools/bundled/metag_tools/__init__.py -> build/lib/galaxy/tools/bundled/metag_tools 2024-06-28T12:28:45,754 copying galaxy/tools/bundled/metag_tools/blat_wrapper.py -> build/lib/galaxy/tools/bundled/metag_tools 2024-06-28T12:28:45,756 copying galaxy/tools/bundled/metag_tools/blat_wrapper.xml -> build/lib/galaxy/tools/bundled/metag_tools 2024-06-28T12:28:45,758 copying galaxy/tools/bundled/metag_tools/shrimp_color_wrapper.py -> build/lib/galaxy/tools/bundled/metag_tools 2024-06-28T12:28:45,760 copying galaxy/tools/bundled/metag_tools/shrimp_color_wrapper.xml -> build/lib/galaxy/tools/bundled/metag_tools 2024-06-28T12:28:45,763 copying galaxy/tools/bundled/metag_tools/shrimp_wrapper.py -> build/lib/galaxy/tools/bundled/metag_tools 2024-06-28T12:28:45,765 copying galaxy/tools/bundled/metag_tools/shrimp_wrapper.xml -> build/lib/galaxy/tools/bundled/metag_tools 2024-06-28T12:28:45,768 creating build/lib/galaxy/tools/bundled/next_gen_conversion 2024-06-28T12:28:45,769 copying galaxy/tools/bundled/next_gen_conversion/bwa_solid2fastq_modified.pl -> build/lib/galaxy/tools/bundled/next_gen_conversion 2024-06-28T12:28:45,771 copying galaxy/tools/bundled/next_gen_conversion/fastq_conversions.py -> build/lib/galaxy/tools/bundled/next_gen_conversion 2024-06-28T12:28:45,773 copying galaxy/tools/bundled/next_gen_conversion/fastq_conversions.xml -> build/lib/galaxy/tools/bundled/next_gen_conversion 2024-06-28T12:28:45,775 copying galaxy/tools/bundled/next_gen_conversion/fastq_gen_conv.py -> build/lib/galaxy/tools/bundled/next_gen_conversion 2024-06-28T12:28:45,777 copying galaxy/tools/bundled/next_gen_conversion/fastq_gen_conv.xml -> build/lib/galaxy/tools/bundled/next_gen_conversion 2024-06-28T12:28:45,780 copying galaxy/tools/bundled/next_gen_conversion/solid2fastq.py -> build/lib/galaxy/tools/bundled/next_gen_conversion 2024-06-28T12:28:45,782 copying galaxy/tools/bundled/next_gen_conversion/solid2fastq.xml -> build/lib/galaxy/tools/bundled/next_gen_conversion 2024-06-28T12:28:45,784 copying galaxy/tools/bundled/next_gen_conversion/solid_to_fastq.py -> build/lib/galaxy/tools/bundled/next_gen_conversion 2024-06-28T12:28:45,786 copying galaxy/tools/bundled/next_gen_conversion/solid_to_fastq.xml -> build/lib/galaxy/tools/bundled/next_gen_conversion 2024-06-28T12:28:45,788 creating build/lib/galaxy/tools/bundled/ngs_simulation 2024-06-28T12:28:45,788 copying galaxy/tools/bundled/ngs_simulation/__init__.py -> build/lib/galaxy/tools/bundled/ngs_simulation 2024-06-28T12:28:45,790 copying galaxy/tools/bundled/ngs_simulation/ngs_simulation.py -> build/lib/galaxy/tools/bundled/ngs_simulation 2024-06-28T12:28:45,793 copying galaxy/tools/bundled/ngs_simulation/ngs_simulation.xml -> build/lib/galaxy/tools/bundled/ngs_simulation 2024-06-28T12:28:45,795 creating build/lib/galaxy/tools/bundled/phenotype_association 2024-06-28T12:28:45,796 copying galaxy/tools/bundled/phenotype_association/BEAM2_wrapper.sh -> build/lib/galaxy/tools/bundled/phenotype_association 2024-06-28T12:28:45,798 copying galaxy/tools/bundled/phenotype_association/__init__.py -> build/lib/galaxy/tools/bundled/phenotype_association 2024-06-28T12:28:45,800 copying galaxy/tools/bundled/phenotype_association/beam.xml -> build/lib/galaxy/tools/bundled/phenotype_association 2024-06-28T12:28:45,802 copying galaxy/tools/bundled/phenotype_association/gpass.pl -> build/lib/galaxy/tools/bundled/phenotype_association 2024-06-28T12:28:45,804 copying galaxy/tools/bundled/phenotype_association/gpass.xml -> build/lib/galaxy/tools/bundled/phenotype_association 2024-06-28T12:28:45,806 copying galaxy/tools/bundled/phenotype_association/ldtools.xml -> build/lib/galaxy/tools/bundled/phenotype_association 2024-06-28T12:28:45,809 copying galaxy/tools/bundled/phenotype_association/ldtools_wrapper.sh -> build/lib/galaxy/tools/bundled/phenotype_association 2024-06-28T12:28:45,810 copying galaxy/tools/bundled/phenotype_association/linkToDavid.pl -> build/lib/galaxy/tools/bundled/phenotype_association 2024-06-28T12:28:45,812 copying galaxy/tools/bundled/phenotype_association/linkToDavid.xml -> build/lib/galaxy/tools/bundled/phenotype_association 2024-06-28T12:28:45,815 copying galaxy/tools/bundled/phenotype_association/linkToGProfile.pl -> build/lib/galaxy/tools/bundled/phenotype_association 2024-06-28T12:28:45,817 copying galaxy/tools/bundled/phenotype_association/linkToGProfile.xml -> build/lib/galaxy/tools/bundled/phenotype_association 2024-06-28T12:28:45,819 copying galaxy/tools/bundled/phenotype_association/lped_to_geno.pl -> build/lib/galaxy/tools/bundled/phenotype_association 2024-06-28T12:28:45,821 copying galaxy/tools/bundled/phenotype_association/lps.xml -> build/lib/galaxy/tools/bundled/phenotype_association 2024-06-28T12:28:45,823 copying galaxy/tools/bundled/phenotype_association/lps_tool_wrapper.sh -> build/lib/galaxy/tools/bundled/phenotype_association 2024-06-28T12:28:45,825 copying galaxy/tools/bundled/phenotype_association/master2gd_snp.pl -> build/lib/galaxy/tools/bundled/phenotype_association 2024-06-28T12:28:45,828 copying galaxy/tools/bundled/phenotype_association/master2gd_snp.xml -> build/lib/galaxy/tools/bundled/phenotype_association 2024-06-28T12:28:45,830 copying galaxy/tools/bundled/phenotype_association/master2pg.pl -> build/lib/galaxy/tools/bundled/phenotype_association 2024-06-28T12:28:45,832 copying galaxy/tools/bundled/phenotype_association/master2pg.xml -> build/lib/galaxy/tools/bundled/phenotype_association 2024-06-28T12:28:45,834 copying galaxy/tools/bundled/phenotype_association/mergeSnps.pl -> build/lib/galaxy/tools/bundled/phenotype_association 2024-06-28T12:28:45,836 copying galaxy/tools/bundled/phenotype_association/pagetag.py -> build/lib/galaxy/tools/bundled/phenotype_association 2024-06-28T12:28:45,838 copying galaxy/tools/bundled/phenotype_association/pass.xml -> build/lib/galaxy/tools/bundled/phenotype_association 2024-06-28T12:28:45,840 copying galaxy/tools/bundled/phenotype_association/pass_wrapper.sh -> build/lib/galaxy/tools/bundled/phenotype_association 2024-06-28T12:28:45,842 copying galaxy/tools/bundled/phenotype_association/senatag.py -> build/lib/galaxy/tools/bundled/phenotype_association 2024-06-28T12:28:45,844 copying galaxy/tools/bundled/phenotype_association/sift.xml -> build/lib/galaxy/tools/bundled/phenotype_association 2024-06-28T12:28:45,846 copying galaxy/tools/bundled/phenotype_association/sift_variants_wrapper.sh -> build/lib/galaxy/tools/bundled/phenotype_association 2024-06-28T12:28:45,848 creating build/lib/galaxy/tools/bundled/plotting 2024-06-28T12:28:45,849 copying galaxy/tools/bundled/plotting/bar_chart.py -> build/lib/galaxy/tools/bundled/plotting 2024-06-28T12:28:45,852 copying galaxy/tools/bundled/plotting/bar_chart.xml -> build/lib/galaxy/tools/bundled/plotting 2024-06-28T12:28:45,854 copying galaxy/tools/bundled/plotting/boxplot.xml -> build/lib/galaxy/tools/bundled/plotting 2024-06-28T12:28:45,856 creating build/lib/galaxy/tools/bundled/solid_tools 2024-06-28T12:28:45,857 copying galaxy/tools/bundled/solid_tools/__init__.py -> build/lib/galaxy/tools/bundled/solid_tools 2024-06-28T12:28:45,859 copying galaxy/tools/bundled/solid_tools/maq_cs_wrapper.py -> build/lib/galaxy/tools/bundled/solid_tools 2024-06-28T12:28:45,862 copying galaxy/tools/bundled/solid_tools/maq_cs_wrapper.xml -> build/lib/galaxy/tools/bundled/solid_tools 2024-06-28T12:28:45,864 copying galaxy/tools/bundled/solid_tools/maq_cs_wrapper_code.py -> build/lib/galaxy/tools/bundled/solid_tools 2024-06-28T12:28:45,866 copying galaxy/tools/bundled/solid_tools/qualsolid_boxplot_graph.sh -> build/lib/galaxy/tools/bundled/solid_tools 2024-06-28T12:28:45,868 copying galaxy/tools/bundled/solid_tools/solid_qual_boxplot.xml -> build/lib/galaxy/tools/bundled/solid_tools 2024-06-28T12:28:45,870 copying galaxy/tools/bundled/solid_tools/solid_qual_stats.py -> build/lib/galaxy/tools/bundled/solid_tools 2024-06-28T12:28:45,872 copying galaxy/tools/bundled/solid_tools/solid_qual_stats.xml -> build/lib/galaxy/tools/bundled/solid_tools 2024-06-28T12:28:45,874 creating build/lib/galaxy/tools/bundled/sr_assembly 2024-06-28T12:28:45,875 copying galaxy/tools/bundled/sr_assembly/__init__.py -> build/lib/galaxy/tools/bundled/sr_assembly 2024-06-28T12:28:45,877 copying galaxy/tools/bundled/sr_assembly/velvetg.xml -> build/lib/galaxy/tools/bundled/sr_assembly 2024-06-28T12:28:45,880 copying galaxy/tools/bundled/sr_assembly/velvetg_wrapper.py -> build/lib/galaxy/tools/bundled/sr_assembly 2024-06-28T12:28:45,882 copying galaxy/tools/bundled/sr_assembly/velveth.xml -> build/lib/galaxy/tools/bundled/sr_assembly 2024-06-28T12:28:45,885 copying galaxy/tools/bundled/sr_assembly/velveth_wrapper.py -> build/lib/galaxy/tools/bundled/sr_assembly 2024-06-28T12:28:45,887 creating build/lib/galaxy/tools/bundled/sr_mapping 2024-06-28T12:28:45,888 copying galaxy/tools/bundled/sr_mapping/PerM.xml -> build/lib/galaxy/tools/bundled/sr_mapping 2024-06-28T12:28:45,891 copying galaxy/tools/bundled/sr_mapping/__init__.py -> build/lib/galaxy/tools/bundled/sr_mapping 2024-06-28T12:28:45,893 copying galaxy/tools/bundled/sr_mapping/bfast_wrapper.py -> build/lib/galaxy/tools/bundled/sr_mapping 2024-06-28T12:28:45,897 copying galaxy/tools/bundled/sr_mapping/bfast_wrapper.xml -> build/lib/galaxy/tools/bundled/sr_mapping 2024-06-28T12:28:45,900 copying galaxy/tools/bundled/sr_mapping/fastq_statistics.xml -> build/lib/galaxy/tools/bundled/sr_mapping 2024-06-28T12:28:45,902 copying galaxy/tools/bundled/sr_mapping/mosaik.xml -> build/lib/galaxy/tools/bundled/sr_mapping 2024-06-28T12:28:45,905 copying galaxy/tools/bundled/sr_mapping/srma_wrapper.py -> build/lib/galaxy/tools/bundled/sr_mapping 2024-06-28T12:28:45,908 copying galaxy/tools/bundled/sr_mapping/srma_wrapper.xml -> build/lib/galaxy/tools/bundled/sr_mapping 2024-06-28T12:28:45,911 creating build/lib/galaxy/tools/bundled/stats 2024-06-28T12:28:45,912 copying galaxy/tools/bundled/stats/__init__.py -> build/lib/galaxy/tools/bundled/stats 2024-06-28T12:28:45,914 copying galaxy/tools/bundled/stats/aggregate_binned_scores_in_intervals.xml -> build/lib/galaxy/tools/bundled/stats 2024-06-28T12:28:45,917 copying galaxy/tools/bundled/stats/aggregate_scores_in_intervals.py -> build/lib/galaxy/tools/bundled/stats 2024-06-28T12:28:45,920 copying galaxy/tools/bundled/stats/filtering.py -> build/lib/galaxy/tools/bundled/stats 2024-06-28T12:28:45,923 copying galaxy/tools/bundled/stats/filtering.xml -> build/lib/galaxy/tools/bundled/stats 2024-06-28T12:28:45,926 copying galaxy/tools/bundled/stats/filtering_1_1_0.xml -> build/lib/galaxy/tools/bundled/stats 2024-06-28T12:28:45,929 copying galaxy/tools/bundled/stats/grouping.py -> build/lib/galaxy/tools/bundled/stats 2024-06-28T12:28:45,931 copying galaxy/tools/bundled/stats/grouping.xml -> build/lib/galaxy/tools/bundled/stats 2024-06-28T12:28:45,934 copying galaxy/tools/bundled/stats/gsummary.py -> build/lib/galaxy/tools/bundled/stats 2024-06-28T12:28:45,937 copying galaxy/tools/bundled/stats/gsummary.xml -> build/lib/galaxy/tools/bundled/stats 2024-06-28T12:28:45,939 copying galaxy/tools/bundled/stats/r_wrapper.sh -> build/lib/galaxy/tools/bundled/stats 2024-06-28T12:28:45,942 copying galaxy/dependencies/conditional-requirements.txt -> build/lib/galaxy/dependencies 2024-06-28T12:28:45,944 copying galaxy/dependencies/dev-requirements.txt -> build/lib/galaxy/dependencies 2024-06-28T12:28:45,947 copying galaxy/dependencies/lint-requirements.txt -> build/lib/galaxy/dependencies 2024-06-28T12:28:45,949 copying galaxy/dependencies/pinned-lint-requirements.txt -> build/lib/galaxy/dependencies 2024-06-28T12:28:45,952 copying galaxy/dependencies/pinned-requirements.txt -> build/lib/galaxy/dependencies 2024-06-28T12:28:45,955 copying galaxy/dependencies/pinned-typecheck-requirements.txt -> build/lib/galaxy/dependencies 2024-06-28T12:28:45,957 copying galaxy/dependencies/update.sh -> build/lib/galaxy/dependencies 2024-06-28T12:28:45,960 copying galaxy/dependencies/update_lint_requirements.sh -> build/lib/galaxy/dependencies 2024-06-28T12:28:45,962 copying galaxy/tools/imp_exp/exp_history_to_archive.xml -> build/lib/galaxy/tools/imp_exp 2024-06-28T12:28:45,964 copying galaxy/tools/imp_exp/exp_history_to_uri.xml -> build/lib/galaxy/tools/imp_exp 2024-06-28T12:28:45,967 copying galaxy/tools/imp_exp/imp_history_from_archive.xml -> build/lib/galaxy/tools/imp_exp 2024-06-28T12:28:45,969 copying galaxy/tools/expressions/cwlNodeEngine.js -> build/lib/galaxy/tools/expressions 2024-06-28T12:28:45,972 copying galaxy/jobs/runners/util/job_script/CLUSTER_SLOTS_STATEMENT.sh -> build/lib/galaxy/jobs/runners/util/job_script 2024-06-28T12:28:45,974 copying galaxy/jobs/runners/util/job_script/DEFAULT_JOB_FILE_TEMPLATE.sh -> build/lib/galaxy/jobs/runners/util/job_script 2024-06-28T12:28:45,977 copying galaxy/jobs/runners/util/job_script/MEMORY_STATEMENT_TEMPLATE.sh -> build/lib/galaxy/jobs/runners/util/job_script 2024-06-28T12:28:45,979 copying galaxy/workflow/resources/example.py.sample -> build/lib/galaxy/workflow/resources 2024-06-28T12:28:46,018 installing to build/bdist.linux-armv7l/wheel 2024-06-28T12:28:46,019 running install 2024-06-28T12:28:46,043 running install_lib 2024-06-28T12:28:46,049 creating build/bdist.linux-armv7l 2024-06-28T12:28:46,049 creating build/bdist.linux-armv7l/wheel 2024-06-28T12:28:46,051 creating build/bdist.linux-armv7l/wheel/galaxy 2024-06-28T12:28:46,052 copying build/lib/galaxy/structured_app.py -> build/bdist.linux-armv7l/wheel/galaxy 2024-06-28T12:28:46,054 creating build/bdist.linux-armv7l/wheel/galaxy/webhooks 2024-06-28T12:28:46,055 copying build/lib/galaxy/webhooks/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/webhooks 2024-06-28T12:28:46,057 creating build/bdist.linux-armv7l/wheel/galaxy/celery 2024-06-28T12:28:46,058 copying build/lib/galaxy/celery/base_task.py -> build/bdist.linux-armv7l/wheel/galaxy/celery 2024-06-28T12:28:46,060 copying build/lib/galaxy/celery/tasks.py -> build/bdist.linux-armv7l/wheel/galaxy/celery 2024-06-28T12:28:46,062 copying build/lib/galaxy/celery/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/celery 2024-06-28T12:28:46,064 copying build/lib/galaxy/celery/_serialization.py -> build/bdist.linux-armv7l/wheel/galaxy/celery 2024-06-28T12:28:46,067 creating build/bdist.linux-armv7l/wheel/galaxy/actions 2024-06-28T12:28:46,067 copying build/lib/galaxy/actions/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/actions 2024-06-28T12:28:46,069 copying build/lib/galaxy/actions/library.py -> build/bdist.linux-armv7l/wheel/galaxy/actions 2024-06-28T12:28:46,071 copying build/lib/galaxy/queues.py -> build/bdist.linux-armv7l/wheel/galaxy 2024-06-28T12:28:46,073 copying build/lib/galaxy/di.py -> build/bdist.linux-armv7l/wheel/galaxy 2024-06-28T12:28:46,075 creating build/bdist.linux-armv7l/wheel/galaxy/authnz 2024-06-28T12:28:46,076 copying build/lib/galaxy/authnz/util.py -> build/bdist.linux-armv7l/wheel/galaxy/authnz 2024-06-28T12:28:46,078 copying build/lib/galaxy/authnz/custos_authnz.py -> build/bdist.linux-armv7l/wheel/galaxy/authnz 2024-06-28T12:28:46,080 copying build/lib/galaxy/authnz/managers.py -> build/bdist.linux-armv7l/wheel/galaxy/authnz 2024-06-28T12:28:46,083 copying build/lib/galaxy/authnz/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/authnz 2024-06-28T12:28:46,085 copying build/lib/galaxy/authnz/psa_authnz.py -> build/bdist.linux-armv7l/wheel/galaxy/authnz 2024-06-28T12:28:46,088 creating build/bdist.linux-armv7l/wheel/galaxy/work 2024-06-28T12:28:46,089 copying build/lib/galaxy/work/context.py -> build/bdist.linux-armv7l/wheel/galaxy/work 2024-06-28T12:28:46,091 copying build/lib/galaxy/work/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/work 2024-06-28T12:28:46,093 creating build/bdist.linux-armv7l/wheel/galaxy/managers 2024-06-28T12:28:46,094 copying build/lib/galaxy/managers/quotas.py -> build/bdist.linux-armv7l/wheel/galaxy/managers 2024-06-28T12:28:46,097 copying build/lib/galaxy/managers/markdown_parse.py -> build/bdist.linux-armv7l/wheel/galaxy/managers 2024-06-28T12:28:46,099 copying build/lib/galaxy/managers/pages.py -> build/bdist.linux-armv7l/wheel/galaxy/managers 2024-06-28T12:28:46,101 copying build/lib/galaxy/managers/libraries.py -> build/bdist.linux-armv7l/wheel/galaxy/managers 2024-06-28T12:28:46,104 copying build/lib/galaxy/managers/jobs.py -> build/bdist.linux-armv7l/wheel/galaxy/managers 2024-06-28T12:28:46,107 copying build/lib/galaxy/managers/collections.py -> build/bdist.linux-armv7l/wheel/galaxy/managers 2024-06-28T12:28:46,110 copying build/lib/galaxy/managers/api_keys.py -> build/bdist.linux-armv7l/wheel/galaxy/managers 2024-06-28T12:28:46,112 copying build/lib/galaxy/managers/deletable.py -> build/bdist.linux-armv7l/wheel/galaxy/managers 2024-06-28T12:28:46,114 copying build/lib/galaxy/managers/ratable.py -> build/bdist.linux-armv7l/wheel/galaxy/managers 2024-06-28T12:28:46,116 copying build/lib/galaxy/managers/tool_data.py -> build/bdist.linux-armv7l/wheel/galaxy/managers 2024-06-28T12:28:46,118 copying build/lib/galaxy/managers/users.py -> build/bdist.linux-armv7l/wheel/galaxy/managers 2024-06-28T12:28:46,120 copying build/lib/galaxy/managers/configuration.py -> build/bdist.linux-armv7l/wheel/galaxy/managers 2024-06-28T12:28:46,122 copying build/lib/galaxy/managers/workflows.py -> build/bdist.linux-armv7l/wheel/galaxy/managers 2024-06-28T12:28:46,126 copying build/lib/galaxy/managers/item_tags.py -> build/bdist.linux-armv7l/wheel/galaxy/managers 2024-06-28T12:28:46,128 copying build/lib/galaxy/managers/base.py -> build/bdist.linux-armv7l/wheel/galaxy/managers 2024-06-28T12:28:46,131 copying build/lib/galaxy/managers/interactivetool.py -> build/bdist.linux-armv7l/wheel/galaxy/managers 2024-06-28T12:28:46,133 copying build/lib/galaxy/managers/dbkeys.py -> build/bdist.linux-armv7l/wheel/galaxy/managers 2024-06-28T12:28:46,135 copying build/lib/galaxy/managers/tasks.py -> build/bdist.linux-armv7l/wheel/galaxy/managers 2024-06-28T12:28:46,137 copying build/lib/galaxy/managers/executables.py -> build/bdist.linux-armv7l/wheel/galaxy/managers 2024-06-28T12:28:46,139 copying build/lib/galaxy/managers/licenses.json -> build/bdist.linux-armv7l/wheel/galaxy/managers 2024-06-28T12:28:46,144 copying build/lib/galaxy/managers/collections_util.py -> build/bdist.linux-armv7l/wheel/galaxy/managers 2024-06-28T12:28:46,146 copying build/lib/galaxy/managers/forms.py -> build/bdist.linux-armv7l/wheel/galaxy/managers 2024-06-28T12:28:46,148 copying build/lib/galaxy/managers/secured.py -> build/bdist.linux-armv7l/wheel/galaxy/managers 2024-06-28T12:28:46,150 copying build/lib/galaxy/managers/annotatable.py -> build/bdist.linux-armv7l/wheel/galaxy/managers 2024-06-28T12:28:46,152 copying build/lib/galaxy/managers/markdown_util.py -> build/bdist.linux-armv7l/wheel/galaxy/managers 2024-06-28T12:28:46,155 copying build/lib/galaxy/managers/datatypes.py -> build/bdist.linux-armv7l/wheel/galaxy/managers 2024-06-28T12:28:46,157 copying build/lib/galaxy/managers/group_roles.py -> build/bdist.linux-armv7l/wheel/galaxy/managers 2024-06-28T12:28:46,159 copying build/lib/galaxy/managers/visualizations.py -> build/bdist.linux-armv7l/wheel/galaxy/managers 2024-06-28T12:28:46,161 copying build/lib/galaxy/managers/metrics.py -> build/bdist.linux-armv7l/wheel/galaxy/managers 2024-06-28T12:28:46,163 copying build/lib/galaxy/managers/sharable.py -> build/bdist.linux-armv7l/wheel/galaxy/managers 2024-06-28T12:28:46,166 copying build/lib/galaxy/managers/taggable.py -> build/bdist.linux-armv7l/wheel/galaxy/managers 2024-06-28T12:28:46,168 copying build/lib/galaxy/managers/folders.py -> build/bdist.linux-armv7l/wheel/galaxy/managers 2024-06-28T12:28:46,170 copying build/lib/galaxy/managers/context.py -> build/bdist.linux-armv7l/wheel/galaxy/managers 2024-06-28T12:28:46,172 copying build/lib/galaxy/managers/rbac_secured.py -> build/bdist.linux-armv7l/wheel/galaxy/managers 2024-06-28T12:28:46,174 copying build/lib/galaxy/managers/roles.py -> build/bdist.linux-armv7l/wheel/galaxy/managers 2024-06-28T12:28:46,176 copying build/lib/galaxy/managers/remote_files.py -> build/bdist.linux-armv7l/wheel/galaxy/managers 2024-06-28T12:28:46,178 copying build/lib/galaxy/managers/session.py -> build/bdist.linux-armv7l/wheel/galaxy/managers 2024-06-28T12:28:46,180 copying build/lib/galaxy/managers/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/managers 2024-06-28T12:28:46,182 copying build/lib/galaxy/managers/group_users.py -> build/bdist.linux-armv7l/wheel/galaxy/managers 2024-06-28T12:28:46,183 copying build/lib/galaxy/managers/lddas.py -> build/bdist.linux-armv7l/wheel/galaxy/managers 2024-06-28T12:28:46,185 copying build/lib/galaxy/managers/datasets.py -> build/bdist.linux-armv7l/wheel/galaxy/managers 2024-06-28T12:28:46,188 copying build/lib/galaxy/managers/export_tracker.py -> build/bdist.linux-armv7l/wheel/galaxy/managers 2024-06-28T12:28:46,190 copying build/lib/galaxy/managers/groups.py -> build/bdist.linux-armv7l/wheel/galaxy/managers 2024-06-28T12:28:46,192 copying build/lib/galaxy/managers/cloudauthzs.py -> build/bdist.linux-armv7l/wheel/galaxy/managers 2024-06-28T12:28:46,194 copying build/lib/galaxy/managers/tools.py -> build/bdist.linux-armv7l/wheel/galaxy/managers 2024-06-28T12:28:46,196 copying build/lib/galaxy/managers/histories.py -> build/bdist.linux-armv7l/wheel/galaxy/managers 2024-06-28T12:28:46,199 copying build/lib/galaxy/managers/licenses.py -> build/bdist.linux-armv7l/wheel/galaxy/managers 2024-06-28T12:28:46,201 copying build/lib/galaxy/managers/library_datasets.py -> build/bdist.linux-armv7l/wheel/galaxy/managers 2024-06-28T12:28:46,203 copying build/lib/galaxy/managers/hdcas.py -> build/bdist.linux-armv7l/wheel/galaxy/managers 2024-06-28T12:28:46,205 copying build/lib/galaxy/managers/cloud.py -> build/bdist.linux-armv7l/wheel/galaxy/managers 2024-06-28T12:28:46,208 copying build/lib/galaxy/managers/hdas.py -> build/bdist.linux-armv7l/wheel/galaxy/managers 2024-06-28T12:28:46,210 copying build/lib/galaxy/managers/tags.py -> build/bdist.linux-armv7l/wheel/galaxy/managers 2024-06-28T12:28:46,212 copying build/lib/galaxy/managers/history_contents.py -> build/bdist.linux-armv7l/wheel/galaxy/managers 2024-06-28T12:28:46,214 copying build/lib/galaxy/managers/job_connections.py -> build/bdist.linux-armv7l/wheel/galaxy/managers 2024-06-28T12:28:46,216 copying build/lib/galaxy/managers/notification.py -> build/bdist.linux-armv7l/wheel/galaxy/managers 2024-06-28T12:28:46,219 copying build/lib/galaxy/managers/model_stores.py -> build/bdist.linux-armv7l/wheel/galaxy/managers 2024-06-28T12:28:46,221 copying build/lib/galaxy/managers/citations.py -> build/bdist.linux-armv7l/wheel/galaxy/managers 2024-06-28T12:28:46,223 copying build/lib/galaxy/managers/display_applications.py -> build/bdist.linux-armv7l/wheel/galaxy/managers 2024-06-28T12:28:46,225 copying build/lib/galaxy/managers/genomes.py -> build/bdist.linux-armv7l/wheel/galaxy/managers 2024-06-28T12:28:46,227 copying build/lib/galaxy/managers/markdown_export_base.css -> build/bdist.linux-armv7l/wheel/galaxy/managers 2024-06-28T12:28:46,230 creating build/bdist.linux-armv7l/wheel/galaxy/tools 2024-06-28T12:28:46,231 copying build/lib/galaxy/tools/wrappers.py -> build/bdist.linux-armv7l/wheel/galaxy/tools 2024-06-28T12:28:46,234 copying build/lib/galaxy/tools/execute.py -> build/bdist.linux-armv7l/wheel/galaxy/tools 2024-06-28T12:28:46,237 creating build/bdist.linux-armv7l/wheel/galaxy/tools/imp_exp 2024-06-28T12:28:46,238 copying build/lib/galaxy/tools/imp_exp/export_history.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/imp_exp 2024-06-28T12:28:46,240 copying build/lib/galaxy/tools/imp_exp/exp_history_to_uri.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/imp_exp 2024-06-28T12:28:46,242 copying build/lib/galaxy/tools/imp_exp/imp_history_from_archive.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/imp_exp 2024-06-28T12:28:46,243 copying build/lib/galaxy/tools/imp_exp/unpack_tar_gz_archive.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/imp_exp 2024-06-28T12:28:46,245 copying build/lib/galaxy/tools/imp_exp/exp_history_to_archive.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/imp_exp 2024-06-28T12:28:46,247 copying build/lib/galaxy/tools/imp_exp/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/imp_exp 2024-06-28T12:28:46,249 creating build/bdist.linux-armv7l/wheel/galaxy/tools/actions 2024-06-28T12:28:46,250 copying build/lib/galaxy/tools/actions/history_imp_exp.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/actions 2024-06-28T12:28:46,252 copying build/lib/galaxy/tools/actions/data_source.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/actions 2024-06-28T12:28:46,254 copying build/lib/galaxy/tools/actions/upload.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/actions 2024-06-28T12:28:46,257 copying build/lib/galaxy/tools/actions/metadata.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/actions 2024-06-28T12:28:46,259 copying build/lib/galaxy/tools/actions/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/actions 2024-06-28T12:28:46,262 copying build/lib/galaxy/tools/actions/upload_common.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/actions 2024-06-28T12:28:46,265 copying build/lib/galaxy/tools/actions/data_manager.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/actions 2024-06-28T12:28:46,266 copying build/lib/galaxy/tools/actions/model_operations.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/actions 2024-06-28T12:28:46,268 copying build/lib/galaxy/tools/exception_handling.py -> build/bdist.linux-armv7l/wheel/galaxy/tools 2024-06-28T12:28:46,270 copying build/lib/galaxy/tools/cache.py -> build/bdist.linux-armv7l/wheel/galaxy/tools 2024-06-28T12:28:46,272 copying build/lib/galaxy/tools/remote_tool_eval.py -> build/bdist.linux-armv7l/wheel/galaxy/tools 2024-06-28T12:28:46,275 creating build/bdist.linux-armv7l/wheel/galaxy/tools/expressions 2024-06-28T12:28:46,275 copying build/lib/galaxy/tools/expressions/util.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/expressions 2024-06-28T12:28:46,277 copying build/lib/galaxy/tools/expressions/cwlNodeEngine.js -> build/bdist.linux-armv7l/wheel/galaxy/tools/expressions 2024-06-28T12:28:46,279 copying build/lib/galaxy/tools/expressions/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/expressions 2024-06-28T12:28:46,280 copying build/lib/galaxy/tools/expressions/evaluation.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/expressions 2024-06-28T12:28:46,282 copying build/lib/galaxy/tools/expressions/script.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/expressions 2024-06-28T12:28:46,284 creating build/bdist.linux-armv7l/wheel/galaxy/tools/filters 2024-06-28T12:28:46,285 copying build/lib/galaxy/tools/filters/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/filters 2024-06-28T12:28:46,287 creating build/bdist.linux-armv7l/wheel/galaxy/tools/data_manager 2024-06-28T12:28:46,288 copying build/lib/galaxy/tools/data_manager/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/data_manager 2024-06-28T12:28:46,289 copying build/lib/galaxy/tools/data_manager/manager.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/data_manager 2024-06-28T12:28:46,292 copying build/lib/galaxy/tools/data_fetch.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools 2024-06-28T12:28:46,294 copying build/lib/galaxy/tools/filter_from_file.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools 2024-06-28T12:28:46,295 copying build/lib/galaxy/tools/duplicate_file_to_collection.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools 2024-06-28T12:28:46,297 copying build/lib/galaxy/tools/data_fetch.py -> build/bdist.linux-armv7l/wheel/galaxy/tools 2024-06-28T12:28:46,300 copying build/lib/galaxy/tools/special_tools.py -> build/bdist.linux-armv7l/wheel/galaxy/tools 2024-06-28T12:28:46,301 copying build/lib/galaxy/tools/zip_collection.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools 2024-06-28T12:28:46,303 copying build/lib/galaxy/tools/relabel_from_file.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools 2024-06-28T12:28:46,306 creating build/bdist.linux-armv7l/wheel/galaxy/tools/search 2024-06-28T12:28:46,307 copying build/lib/galaxy/tools/search/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/search 2024-06-28T12:28:46,309 copying build/lib/galaxy/tools/build_list_1.2.0.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools 2024-06-28T12:28:46,311 copying build/lib/galaxy/tools/tag_collection_from_file.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools 2024-06-28T12:28:46,314 creating build/bdist.linux-armv7l/wheel/galaxy/tools/parameters 2024-06-28T12:28:46,315 copying build/lib/galaxy/tools/parameters/input_translation.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/parameters 2024-06-28T12:28:46,317 copying build/lib/galaxy/tools/parameters/workflow_utils.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/parameters 2024-06-28T12:28:46,319 copying build/lib/galaxy/tools/parameters/grouping.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/parameters 2024-06-28T12:28:46,321 copying build/lib/galaxy/tools/parameters/wrapped_json.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/parameters 2024-06-28T12:28:46,323 copying build/lib/galaxy/tools/parameters/basic.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/parameters 2024-06-28T12:28:46,329 copying build/lib/galaxy/tools/parameters/wrapped.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/parameters 2024-06-28T12:28:46,331 copying build/lib/galaxy/tools/parameters/validation.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/parameters 2024-06-28T12:28:46,333 copying build/lib/galaxy/tools/parameters/meta.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/parameters 2024-06-28T12:28:46,336 copying build/lib/galaxy/tools/parameters/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/parameters 2024-06-28T12:28:46,338 copying build/lib/galaxy/tools/parameters/history_query.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/parameters 2024-06-28T12:28:46,340 copying build/lib/galaxy/tools/parameters/dataset_matcher.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/parameters 2024-06-28T12:28:46,342 copying build/lib/galaxy/tools/parameters/sanitize.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/parameters 2024-06-28T12:28:46,344 copying build/lib/galaxy/tools/parameters/cancelable_request.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/parameters 2024-06-28T12:28:46,346 copying build/lib/galaxy/tools/parameters/dynamic_options.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/parameters 2024-06-28T12:28:46,348 copying build/lib/galaxy/tools/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tools 2024-06-28T12:28:46,353 copying build/lib/galaxy/tools/sort_collection_list.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools 2024-06-28T12:28:46,356 copying build/lib/galaxy/tools/extract_dataset.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools 2024-06-28T12:28:46,358 copying build/lib/galaxy/tools/biotools.py -> build/bdist.linux-armv7l/wheel/galaxy/tools 2024-06-28T12:28:46,359 copying build/lib/galaxy/tools/recommendations.py -> build/bdist.linux-armv7l/wheel/galaxy/tools 2024-06-28T12:28:46,362 copying build/lib/galaxy/tools/evaluation.py -> build/bdist.linux-armv7l/wheel/galaxy/tools 2024-06-28T12:28:46,364 copying build/lib/galaxy/tools/test.py -> build/bdist.linux-armv7l/wheel/galaxy/tools 2024-06-28T12:28:46,367 copying build/lib/galaxy/tools/harmonize_two_collections_list.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools 2024-06-28T12:28:46,369 copying build/lib/galaxy/tools/errors.py -> build/bdist.linux-armv7l/wheel/galaxy/tools 2024-06-28T12:28:46,371 copying build/lib/galaxy/tools/flatten_collection.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools 2024-06-28T12:28:46,373 copying build/lib/galaxy/tools/filter_empty_collection.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools 2024-06-28T12:28:46,375 copying build/lib/galaxy/tools/merge_collection.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools 2024-06-28T12:28:46,378 creating build/bdist.linux-armv7l/wheel/galaxy/tools/bundled 2024-06-28T12:28:46,380 creating build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/data_export 2024-06-28T12:28:46,381 copying build/lib/galaxy/tools/bundled/data_export/export_remote.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/data_export 2024-06-28T12:28:46,383 copying build/lib/galaxy/tools/bundled/data_export/export_remote.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/data_export 2024-06-28T12:28:46,385 copying build/lib/galaxy/tools/bundled/data_export/send.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/data_export 2024-06-28T12:28:46,387 copying build/lib/galaxy/tools/bundled/data_export/send.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/data_export 2024-06-28T12:28:46,389 creating build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/ngs_simulation 2024-06-28T12:28:46,390 copying build/lib/galaxy/tools/bundled/ngs_simulation/ngs_simulation.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/ngs_simulation 2024-06-28T12:28:46,392 copying build/lib/galaxy/tools/bundled/ngs_simulation/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/ngs_simulation 2024-06-28T12:28:46,394 copying build/lib/galaxy/tools/bundled/ngs_simulation/ngs_simulation.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/ngs_simulation 2024-06-28T12:28:46,396 creating build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/plotting 2024-06-28T12:28:46,397 copying build/lib/galaxy/tools/bundled/plotting/bar_chart.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/plotting 2024-06-28T12:28:46,399 copying build/lib/galaxy/tools/bundled/plotting/boxplot.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/plotting 2024-06-28T12:28:46,401 copying build/lib/galaxy/tools/bundled/plotting/bar_chart.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/plotting 2024-06-28T12:28:46,403 creating build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/extract 2024-06-28T12:28:46,404 copying build/lib/galaxy/tools/bundled/extract/liftOver_wrapper.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/extract 2024-06-28T12:28:46,406 copying build/lib/galaxy/tools/bundled/extract/liftOver_wrapper.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/extract 2024-06-28T12:28:46,408 copying build/lib/galaxy/tools/bundled/extract/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/extract 2024-06-28T12:28:46,409 copying build/lib/galaxy/tools/bundled/extract/extract_genomic_dna.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/extract 2024-06-28T12:28:46,412 copying build/lib/galaxy/tools/bundled/extract/extract_genomic_dna.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/extract 2024-06-28T12:28:46,415 creating build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/maf 2024-06-28T12:28:46,416 copying build/lib/galaxy/tools/bundled/maf/maf_reverse_complement.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/maf 2024-06-28T12:28:46,418 copying build/lib/galaxy/tools/bundled/maf/maf_limit_size.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/maf 2024-06-28T12:28:46,420 copying build/lib/galaxy/tools/bundled/maf/maf_to_fasta_multiple_sets.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/maf 2024-06-28T12:28:46,422 copying build/lib/galaxy/tools/bundled/maf/interval2maf.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/maf 2024-06-28T12:28:46,424 copying build/lib/galaxy/tools/bundled/maf/maf_stats.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/maf 2024-06-28T12:28:46,427 copying build/lib/galaxy/tools/bundled/maf/maf_filter.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/maf 2024-06-28T12:28:46,429 copying build/lib/galaxy/tools/bundled/maf/vcf_to_maf_customtrack.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/maf 2024-06-28T12:28:46,431 copying build/lib/galaxy/tools/bundled/maf/interval_maf_to_merged_fasta.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/maf 2024-06-28T12:28:46,433 copying build/lib/galaxy/tools/bundled/maf/genebed_maf_to_fasta.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/maf 2024-06-28T12:28:46,435 copying build/lib/galaxy/tools/bundled/maf/vcf_to_maf_customtrack.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/maf 2024-06-28T12:28:46,437 copying build/lib/galaxy/tools/bundled/maf/maf_to_fasta_concat.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/maf 2024-06-28T12:28:46,439 copying build/lib/galaxy/tools/bundled/maf/maf_by_block_number.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/maf 2024-06-28T12:28:46,441 copying build/lib/galaxy/tools/bundled/maf/maf_limit_to_species.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/maf 2024-06-28T12:28:46,443 copying build/lib/galaxy/tools/bundled/maf/maf_to_fasta.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/maf 2024-06-28T12:28:46,445 copying build/lib/galaxy/tools/bundled/maf/maf_to_bed.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/maf 2024-06-28T12:28:46,447 copying build/lib/galaxy/tools/bundled/maf/maf_reverse_complement.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/maf 2024-06-28T12:28:46,449 copying build/lib/galaxy/tools/bundled/maf/maf_by_block_number.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/maf 2024-06-28T12:28:46,451 copying build/lib/galaxy/tools/bundled/maf/maf_thread_for_species.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/maf 2024-06-28T12:28:46,452 copying build/lib/galaxy/tools/bundled/maf/maf_to_interval.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/maf 2024-06-28T12:28:46,454 copying build/lib/galaxy/tools/bundled/maf/maf_to_bed_code.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/maf 2024-06-28T12:28:46,456 copying build/lib/galaxy/tools/bundled/maf/interval2maf_pairwise.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/maf 2024-06-28T12:28:46,457 copying build/lib/galaxy/tools/bundled/maf/maf_filter.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/maf 2024-06-28T12:28:46,459 copying build/lib/galaxy/tools/bundled/maf/maf_stats.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/maf 2024-06-28T12:28:46,461 copying build/lib/galaxy/tools/bundled/maf/interval_maf_to_merged_fasta.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/maf 2024-06-28T12:28:46,463 copying build/lib/galaxy/tools/bundled/maf/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/maf 2024-06-28T12:28:46,464 copying build/lib/galaxy/tools/bundled/maf/macros.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/maf 2024-06-28T12:28:46,466 copying build/lib/galaxy/tools/bundled/maf/maf_limit_size.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/maf 2024-06-28T12:28:46,468 copying build/lib/galaxy/tools/bundled/maf/interval2maf.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/maf 2024-06-28T12:28:46,470 copying build/lib/galaxy/tools/bundled/maf/maf_limit_to_species.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/maf 2024-06-28T12:28:46,472 copying build/lib/galaxy/tools/bundled/maf/maf_split_by_species.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/maf 2024-06-28T12:28:46,473 copying build/lib/galaxy/tools/bundled/maf/maf_split_by_species.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/maf 2024-06-28T12:28:46,476 copying build/lib/galaxy/tools/bundled/maf/maf_to_bed.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/maf 2024-06-28T12:28:46,478 copying build/lib/galaxy/tools/bundled/maf/maf_thread_for_species.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/maf 2024-06-28T12:28:46,480 copying build/lib/galaxy/tools/bundled/maf/maf_to_interval.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/maf 2024-06-28T12:28:46,483 creating build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/solid_tools 2024-06-28T12:28:46,483 copying build/lib/galaxy/tools/bundled/solid_tools/solid_qual_stats.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/solid_tools 2024-06-28T12:28:46,486 copying build/lib/galaxy/tools/bundled/solid_tools/solid_qual_stats.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/solid_tools 2024-06-28T12:28:46,488 copying build/lib/galaxy/tools/bundled/solid_tools/maq_cs_wrapper.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/solid_tools 2024-06-28T12:28:46,490 copying build/lib/galaxy/tools/bundled/solid_tools/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/solid_tools 2024-06-28T12:28:46,491 copying build/lib/galaxy/tools/bundled/solid_tools/qualsolid_boxplot_graph.sh -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/solid_tools 2024-06-28T12:28:46,493 copying build/lib/galaxy/tools/bundled/solid_tools/maq_cs_wrapper.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/solid_tools 2024-06-28T12:28:46,495 copying build/lib/galaxy/tools/bundled/solid_tools/maq_cs_wrapper_code.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/solid_tools 2024-06-28T12:28:46,497 copying build/lib/galaxy/tools/bundled/solid_tools/solid_qual_boxplot.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/solid_tools 2024-06-28T12:28:46,500 creating build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2024-06-28T12:28:46,501 copying build/lib/galaxy/tools/bundled/filters/axt_to_lav.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2024-06-28T12:28:46,504 copying build/lib/galaxy/tools/bundled/filters/CreateInterval.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2024-06-28T12:28:46,505 copying build/lib/galaxy/tools/bundled/filters/fixedValueColumn.pl -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2024-06-28T12:28:46,507 copying build/lib/galaxy/tools/bundled/filters/ucsc_gene_bed_to_intron_bed.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2024-06-28T12:28:46,509 copying build/lib/galaxy/tools/bundled/filters/grep.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2024-06-28T12:28:46,511 copying build/lib/galaxy/tools/bundled/filters/axt_to_concat_fasta.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2024-06-28T12:28:46,513 copying build/lib/galaxy/tools/bundled/filters/joiner2.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2024-06-28T12:28:46,514 copying build/lib/galaxy/tools/bundled/filters/joinWrapper.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2024-06-28T12:28:46,516 copying build/lib/galaxy/tools/bundled/filters/uniq.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2024-06-28T12:28:46,518 copying build/lib/galaxy/tools/bundled/filters/bed_to_gff_converter.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2024-06-28T12:28:46,520 copying build/lib/galaxy/tools/bundled/filters/bed2gff.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2024-06-28T12:28:46,522 copying build/lib/galaxy/tools/bundled/filters/uniq.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2024-06-28T12:28:46,524 copying build/lib/galaxy/tools/bundled/filters/axt_to_concat_fasta.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2024-06-28T12:28:46,526 copying build/lib/galaxy/tools/bundled/filters/changeCase.pl -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2024-06-28T12:28:46,528 copying build/lib/galaxy/tools/bundled/filters/lav_to_bed.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2024-06-28T12:28:46,529 copying build/lib/galaxy/tools/bundled/filters/condense_characters.pl -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2024-06-28T12:28:46,531 copying build/lib/galaxy/tools/bundled/filters/sff_extract.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2024-06-28T12:28:46,534 copying build/lib/galaxy/tools/bundled/filters/remove_beginning.pl -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2024-06-28T12:28:46,536 copying build/lib/galaxy/tools/bundled/filters/axt_to_lav_code.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2024-06-28T12:28:46,538 copying build/lib/galaxy/tools/bundled/filters/ucsc_gene_bed_to_exon_bed.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2024-06-28T12:28:46,540 copying build/lib/galaxy/tools/bundled/filters/headWrapper.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2024-06-28T12:28:46,542 copying build/lib/galaxy/tools/bundled/filters/changeCase.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2024-06-28T12:28:46,543 copying build/lib/galaxy/tools/bundled/filters/catWrapper.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2024-06-28T12:28:46,546 creating build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters/gff 2024-06-28T12:28:46,547 copying build/lib/galaxy/tools/bundled/filters/gff/gff_filter_by_feature_count.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters/gff 2024-06-28T12:28:46,549 copying build/lib/galaxy/tools/bundled/filters/gff/gtf_filter_by_attribute_values_list.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters/gff 2024-06-28T12:28:46,551 copying build/lib/galaxy/tools/bundled/filters/gff/extract_GFF_Features.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters/gff 2024-06-28T12:28:46,553 copying build/lib/galaxy/tools/bundled/filters/gff/extract_GFF_Features.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters/gff 2024-06-28T12:28:46,555 copying build/lib/galaxy/tools/bundled/filters/gff/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters/gff 2024-06-28T12:28:46,557 copying build/lib/galaxy/tools/bundled/filters/gff/gff_filter_by_feature_count.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters/gff 2024-06-28T12:28:46,559 copying build/lib/galaxy/tools/bundled/filters/gff/gff_filter_by_attribute.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters/gff 2024-06-28T12:28:46,560 copying build/lib/galaxy/tools/bundled/filters/gff/gtf_filter_by_attribute_values_list.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters/gff 2024-06-28T12:28:46,563 copying build/lib/galaxy/tools/bundled/filters/gff/gff_filter_by_attribute.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters/gff 2024-06-28T12:28:46,565 copying build/lib/galaxy/tools/bundled/filters/secure_hash_message_digest.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2024-06-28T12:28:46,567 copying build/lib/galaxy/tools/bundled/filters/sorter.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2024-06-28T12:28:46,569 copying build/lib/galaxy/tools/bundled/filters/sorter.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2024-06-28T12:28:46,571 copying build/lib/galaxy/tools/bundled/filters/condense_characters.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2024-06-28T12:28:46,573 copying build/lib/galaxy/tools/bundled/filters/wiggle_to_simple.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2024-06-28T12:28:46,575 copying build/lib/galaxy/tools/bundled/filters/randomlines.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2024-06-28T12:28:46,577 copying build/lib/galaxy/tools/bundled/filters/secure_hash_message_digest.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2024-06-28T12:28:46,579 copying build/lib/galaxy/tools/bundled/filters/cutWrapper.pl -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2024-06-28T12:28:46,581 copying build/lib/galaxy/tools/bundled/filters/convert_characters.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2024-06-28T12:28:46,584 copying build/lib/galaxy/tools/bundled/filters/mergeCols.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2024-06-28T12:28:46,586 copying build/lib/galaxy/tools/bundled/filters/join.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2024-06-28T12:28:46,589 copying build/lib/galaxy/tools/bundled/filters/wig_to_bigwig.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2024-06-28T12:28:46,591 copying build/lib/galaxy/tools/bundled/filters/joiner.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2024-06-28T12:28:46,593 copying build/lib/galaxy/tools/bundled/filters/remove_beginning.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2024-06-28T12:28:46,595 copying build/lib/galaxy/tools/bundled/filters/pasteWrapper.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2024-06-28T12:28:46,597 copying build/lib/galaxy/tools/bundled/filters/convert_characters.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2024-06-28T12:28:46,600 copying build/lib/galaxy/tools/bundled/filters/sff_extractor.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2024-06-28T12:28:46,602 copying build/lib/galaxy/tools/bundled/filters/axt_to_lav.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2024-06-28T12:28:46,604 copying build/lib/galaxy/tools/bundled/filters/gtf2bedgraph.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2024-06-28T12:28:46,607 copying build/lib/galaxy/tools/bundled/filters/gff2bed.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2024-06-28T12:28:46,609 copying build/lib/galaxy/tools/bundled/filters/fileGrep.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2024-06-28T12:28:46,611 copying build/lib/galaxy/tools/bundled/filters/mergeCols.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2024-06-28T12:28:46,613 copying build/lib/galaxy/tools/bundled/filters/trimmer.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2024-06-28T12:28:46,616 copying build/lib/galaxy/tools/bundled/filters/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2024-06-28T12:28:46,617 copying build/lib/galaxy/tools/bundled/filters/trimmer.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2024-06-28T12:28:46,619 copying build/lib/galaxy/tools/bundled/filters/axt_to_fasta.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2024-06-28T12:28:46,621 copying build/lib/galaxy/tools/bundled/filters/commWrapper.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2024-06-28T12:28:46,623 copying build/lib/galaxy/tools/bundled/filters/grep.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2024-06-28T12:28:46,625 copying build/lib/galaxy/tools/bundled/filters/CreateInterval.pl -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2024-06-28T12:28:46,627 copying build/lib/galaxy/tools/bundled/filters/ucsc_gene_bed_to_intron_bed.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2024-06-28T12:28:46,629 copying build/lib/galaxy/tools/bundled/filters/compare.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2024-06-28T12:28:46,632 copying build/lib/galaxy/tools/bundled/filters/cutWrapper.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2024-06-28T12:28:46,634 copying build/lib/galaxy/tools/bundled/filters/catWrapper.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2024-06-28T12:28:46,636 copying build/lib/galaxy/tools/bundled/filters/axt_to_fasta.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2024-06-28T12:28:46,638 copying build/lib/galaxy/tools/bundled/filters/tailWrapper.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2024-06-28T12:28:46,640 copying build/lib/galaxy/tools/bundled/filters/random_lines_two_pass.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2024-06-28T12:28:46,643 copying build/lib/galaxy/tools/bundled/filters/randomlines.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2024-06-28T12:28:46,645 copying build/lib/galaxy/tools/bundled/filters/pasteWrapper.pl -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2024-06-28T12:28:46,647 copying build/lib/galaxy/tools/bundled/filters/bed_to_bigbed.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2024-06-28T12:28:46,649 copying build/lib/galaxy/tools/bundled/filters/ucsc_gene_table_to_intervals.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2024-06-28T12:28:46,652 copying build/lib/galaxy/tools/bundled/filters/gff_to_bed_converter.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2024-06-28T12:28:46,655 copying build/lib/galaxy/tools/bundled/filters/wiggle_to_simple.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2024-06-28T12:28:46,657 copying build/lib/galaxy/tools/bundled/filters/fixedValueColumn.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2024-06-28T12:28:46,659 copying build/lib/galaxy/tools/bundled/filters/commWrapper.pl -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2024-06-28T12:28:46,661 copying build/lib/galaxy/tools/bundled/filters/lav_to_bed_code.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2024-06-28T12:28:46,663 copying build/lib/galaxy/tools/bundled/filters/lav_to_bed.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2024-06-28T12:28:46,665 copying build/lib/galaxy/tools/bundled/filters/ucsc_gene_bed_to_exon_bed.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2024-06-28T12:28:46,668 copying build/lib/galaxy/tools/bundled/filters/grep_1.0.1.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2024-06-28T12:28:46,670 copying build/lib/galaxy/tools/bundled/filters/wc_gnu.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2024-06-28T12:28:46,672 copying build/lib/galaxy/tools/bundled/filters/gtf_to_bedgraph_converter.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2024-06-28T12:28:46,674 copying build/lib/galaxy/tools/bundled/filters/ucsc_gene_table_to_intervals.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2024-06-28T12:28:46,677 creating build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/expression_tools 2024-06-28T12:28:46,678 copying build/lib/galaxy/tools/bundled/expression_tools/pick_value.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/expression_tools 2024-06-28T12:28:46,681 copying build/lib/galaxy/tools/bundled/expression_tools/expression_macros.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/expression_tools 2024-06-28T12:28:46,682 copying build/lib/galaxy/tools/bundled/expression_tools/parse_values_from_file.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/expression_tools 2024-06-28T12:28:46,685 creating build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/stats 2024-06-28T12:28:46,686 copying build/lib/galaxy/tools/bundled/stats/filtering_1_1_0.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/stats 2024-06-28T12:28:46,689 copying build/lib/galaxy/tools/bundled/stats/grouping.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/stats 2024-06-28T12:28:46,692 copying build/lib/galaxy/tools/bundled/stats/aggregate_binned_scores_in_intervals.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/stats 2024-06-28T12:28:46,695 copying build/lib/galaxy/tools/bundled/stats/filtering.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/stats 2024-06-28T12:28:46,698 copying build/lib/galaxy/tools/bundled/stats/gsummary.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/stats 2024-06-28T12:28:46,700 copying build/lib/galaxy/tools/bundled/stats/r_wrapper.sh -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/stats 2024-06-28T12:28:46,703 copying build/lib/galaxy/tools/bundled/stats/gsummary.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/stats 2024-06-28T12:28:46,706 copying build/lib/galaxy/tools/bundled/stats/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/stats 2024-06-28T12:28:46,708 copying build/lib/galaxy/tools/bundled/stats/grouping.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/stats 2024-06-28T12:28:46,711 copying build/lib/galaxy/tools/bundled/stats/aggregate_scores_in_intervals.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/stats 2024-06-28T12:28:46,715 copying build/lib/galaxy/tools/bundled/stats/filtering.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/stats 2024-06-28T12:28:46,719 creating build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/phenotype_association 2024-06-28T12:28:46,720 copying build/lib/galaxy/tools/bundled/phenotype_association/beam.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/phenotype_association 2024-06-28T12:28:46,723 copying build/lib/galaxy/tools/bundled/phenotype_association/senatag.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/phenotype_association 2024-06-28T12:28:46,726 copying build/lib/galaxy/tools/bundled/phenotype_association/sift.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/phenotype_association 2024-06-28T12:28:46,729 copying build/lib/galaxy/tools/bundled/phenotype_association/mergeSnps.pl -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/phenotype_association 2024-06-28T12:28:46,731 copying build/lib/galaxy/tools/bundled/phenotype_association/linkToDavid.pl -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/phenotype_association 2024-06-28T12:28:46,733 copying build/lib/galaxy/tools/bundled/phenotype_association/ldtools_wrapper.sh -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/phenotype_association 2024-06-28T12:28:46,735 copying build/lib/galaxy/tools/bundled/phenotype_association/lped_to_geno.pl -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/phenotype_association 2024-06-28T12:28:46,737 copying build/lib/galaxy/tools/bundled/phenotype_association/ldtools.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/phenotype_association 2024-06-28T12:28:46,740 copying build/lib/galaxy/tools/bundled/phenotype_association/master2gd_snp.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/phenotype_association 2024-06-28T12:28:46,742 copying build/lib/galaxy/tools/bundled/phenotype_association/lps_tool_wrapper.sh -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/phenotype_association 2024-06-28T12:28:46,744 copying build/lib/galaxy/tools/bundled/phenotype_association/gpass.pl -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/phenotype_association 2024-06-28T12:28:46,746 copying build/lib/galaxy/tools/bundled/phenotype_association/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/phenotype_association 2024-06-28T12:28:46,748 copying build/lib/galaxy/tools/bundled/phenotype_association/sift_variants_wrapper.sh -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/phenotype_association 2024-06-28T12:28:46,751 copying build/lib/galaxy/tools/bundled/phenotype_association/linkToGProfile.pl -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/phenotype_association 2024-06-28T12:28:46,753 copying build/lib/galaxy/tools/bundled/phenotype_association/pagetag.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/phenotype_association 2024-06-28T12:28:46,755 copying build/lib/galaxy/tools/bundled/phenotype_association/lps.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/phenotype_association 2024-06-28T12:28:46,758 copying build/lib/galaxy/tools/bundled/phenotype_association/linkToDavid.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/phenotype_association 2024-06-28T12:28:46,761 copying build/lib/galaxy/tools/bundled/phenotype_association/BEAM2_wrapper.sh -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/phenotype_association 2024-06-28T12:28:46,763 copying build/lib/galaxy/tools/bundled/phenotype_association/pass_wrapper.sh -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/phenotype_association 2024-06-28T12:28:46,765 copying build/lib/galaxy/tools/bundled/phenotype_association/linkToGProfile.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/phenotype_association 2024-06-28T12:28:46,768 copying build/lib/galaxy/tools/bundled/phenotype_association/master2pg.pl -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/phenotype_association 2024-06-28T12:28:46,770 copying build/lib/galaxy/tools/bundled/phenotype_association/master2pg.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/phenotype_association 2024-06-28T12:28:46,772 copying build/lib/galaxy/tools/bundled/phenotype_association/gpass.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/phenotype_association 2024-06-28T12:28:46,775 copying build/lib/galaxy/tools/bundled/phenotype_association/pass.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/phenotype_association 2024-06-28T12:28:46,778 copying build/lib/galaxy/tools/bundled/phenotype_association/master2gd_snp.pl -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/phenotype_association 2024-06-28T12:28:46,782 creating build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/data_source 2024-06-28T12:28:46,783 copying build/lib/galaxy/tools/bundled/data_source/biomart_test.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/data_source 2024-06-28T12:28:46,786 copying build/lib/galaxy/tools/bundled/data_source/hapmapmart.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/data_source 2024-06-28T12:28:46,788 copying build/lib/galaxy/tools/bundled/data_source/upload.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/data_source 2024-06-28T12:28:46,791 copying build/lib/galaxy/tools/bundled/data_source/data_source.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/data_source 2024-06-28T12:28:46,793 copying build/lib/galaxy/tools/bundled/data_source/hbvar.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/data_source 2024-06-28T12:28:46,796 copying build/lib/galaxy/tools/bundled/data_source/cbi_rice_mart.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/data_source 2024-06-28T12:28:46,798 copying build/lib/galaxy/tools/bundled/data_source/ratmine.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/data_source 2024-06-28T12:28:46,800 copying build/lib/galaxy/tools/bundled/data_source/import.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/data_source 2024-06-28T12:28:46,802 copying build/lib/galaxy/tools/bundled/data_source/ebi_sra.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/data_source 2024-06-28T12:28:46,804 copying build/lib/galaxy/tools/bundled/data_source/fly_modencode.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/data_source 2024-06-28T12:28:46,807 copying build/lib/galaxy/tools/bundled/data_source/zebrafishmine.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/data_source 2024-06-28T12:28:46,809 copying build/lib/galaxy/tools/bundled/data_source/upload.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/data_source 2024-06-28T12:28:46,812 copying build/lib/galaxy/tools/bundled/data_source/ncbi_datasets.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/data_source 2024-06-28T12:28:46,818 copying build/lib/galaxy/tools/bundled/data_source/ucsc_tablebrowser.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/data_source 2024-06-28T12:28:46,820 copying build/lib/galaxy/tools/bundled/data_source/metabolicmine.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/data_source 2024-06-28T12:28:46,823 copying build/lib/galaxy/tools/bundled/data_source/eupathdb.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/data_source 2024-06-28T12:28:46,825 copying build/lib/galaxy/tools/bundled/data_source/intermine.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/data_source 2024-06-28T12:28:46,827 copying build/lib/galaxy/tools/bundled/data_source/yeastmine.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/data_source 2024-06-28T12:28:46,829 copying build/lib/galaxy/tools/bundled/data_source/genbank.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/data_source 2024-06-28T12:28:46,831 copying build/lib/galaxy/tools/bundled/data_source/ucsc_tablebrowser_archaea.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/data_source 2024-06-28T12:28:46,834 copying build/lib/galaxy/tools/bundled/data_source/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/data_source 2024-06-28T12:28:46,835 copying build/lib/galaxy/tools/bundled/data_source/wormbase_test.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/data_source 2024-06-28T12:28:46,838 copying build/lib/galaxy/tools/bundled/data_source/microbial_import.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/data_source 2024-06-28T12:28:46,840 copying build/lib/galaxy/tools/bundled/data_source/genbank.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/data_source 2024-06-28T12:28:46,843 copying build/lib/galaxy/tools/bundled/data_source/biomart.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/data_source 2024-06-28T12:28:46,845 copying build/lib/galaxy/tools/bundled/data_source/microbial_import_code.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/data_source 2024-06-28T12:28:46,848 copying build/lib/galaxy/tools/bundled/data_source/mousemine.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/data_source 2024-06-28T12:28:46,851 copying build/lib/galaxy/tools/bundled/data_source/flymine_test.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/data_source 2024-06-28T12:28:46,853 copying build/lib/galaxy/tools/bundled/data_source/modmine.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/data_source 2024-06-28T12:28:46,855 copying build/lib/galaxy/tools/bundled/data_source/flymine.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/data_source 2024-06-28T12:28:46,858 copying build/lib/galaxy/tools/bundled/data_source/gramene_mart.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/data_source 2024-06-28T12:28:46,860 copying build/lib/galaxy/tools/bundled/data_source/worm_modencode.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/data_source 2024-06-28T12:28:46,862 copying build/lib/galaxy/tools/bundled/data_source/sra.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/data_source 2024-06-28T12:28:46,864 copying build/lib/galaxy/tools/bundled/data_source/access_libraries.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/data_source 2024-06-28T12:28:46,866 copying build/lib/galaxy/tools/bundled/data_source/microbial_import.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/data_source 2024-06-28T12:28:46,869 copying build/lib/galaxy/tools/bundled/data_source/import.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/data_source 2024-06-28T12:28:46,871 copying build/lib/galaxy/tools/bundled/data_source/wormbase.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/data_source 2024-06-28T12:28:46,873 copying build/lib/galaxy/tools/bundled/data_source/ucsc_tablebrowser_test.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/data_source 2024-06-28T12:28:46,876 creating build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/meme 2024-06-28T12:28:46,877 copying build/lib/galaxy/tools/bundled/meme/meme.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/meme 2024-06-28T12:28:46,880 copying build/lib/galaxy/tools/bundled/meme/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/meme 2024-06-28T12:28:46,882 copying build/lib/galaxy/tools/bundled/meme/fimo_wrapper.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/meme 2024-06-28T12:28:46,884 copying build/lib/galaxy/tools/bundled/meme/fimo.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/meme 2024-06-28T12:28:46,888 creating build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/sr_mapping 2024-06-28T12:28:46,890 copying build/lib/galaxy/tools/bundled/sr_mapping/PerM.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/sr_mapping 2024-06-28T12:28:46,893 copying build/lib/galaxy/tools/bundled/sr_mapping/bfast_wrapper.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/sr_mapping 2024-06-28T12:28:46,895 copying build/lib/galaxy/tools/bundled/sr_mapping/srma_wrapper.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/sr_mapping 2024-06-28T12:28:46,898 copying build/lib/galaxy/tools/bundled/sr_mapping/fastq_statistics.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/sr_mapping 2024-06-28T12:28:46,900 copying build/lib/galaxy/tools/bundled/sr_mapping/bfast_wrapper.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/sr_mapping 2024-06-28T12:28:46,903 copying build/lib/galaxy/tools/bundled/sr_mapping/srma_wrapper.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/sr_mapping 2024-06-28T12:28:46,905 copying build/lib/galaxy/tools/bundled/sr_mapping/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/sr_mapping 2024-06-28T12:28:46,906 copying build/lib/galaxy/tools/bundled/sr_mapping/mosaik.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/sr_mapping 2024-06-28T12:28:46,908 copying build/lib/galaxy/tools/bundled/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled 2024-06-28T12:28:46,910 creating build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/metag_tools 2024-06-28T12:28:46,911 copying build/lib/galaxy/tools/bundled/metag_tools/shrimp_color_wrapper.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/metag_tools 2024-06-28T12:28:46,914 copying build/lib/galaxy/tools/bundled/metag_tools/shrimp_wrapper.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/metag_tools 2024-06-28T12:28:46,916 copying build/lib/galaxy/tools/bundled/metag_tools/blat_wrapper.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/metag_tools 2024-06-28T12:28:46,918 copying build/lib/galaxy/tools/bundled/metag_tools/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/metag_tools 2024-06-28T12:28:46,919 copying build/lib/galaxy/tools/bundled/metag_tools/blat_wrapper.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/metag_tools 2024-06-28T12:28:46,921 copying build/lib/galaxy/tools/bundled/metag_tools/shrimp_wrapper.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/metag_tools 2024-06-28T12:28:46,923 copying build/lib/galaxy/tools/bundled/metag_tools/shrimp_color_wrapper.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/metag_tools 2024-06-28T12:28:46,926 creating build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/interactive 2024-06-28T12:28:46,927 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_panoply.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/interactive 2024-06-28T12:28:46,929 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_neo4j.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/interactive 2024-06-28T12:28:46,930 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_wilson.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/interactive 2024-06-28T12:28:46,932 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_vrm_editor.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/interactive 2024-06-28T12:28:46,934 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_radiant.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/interactive 2024-06-28T12:28:46,936 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_higlass.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/interactive 2024-06-28T12:28:46,938 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_openrefine.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/interactive 2024-06-28T12:28:46,940 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_pangeo_notebook.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/interactive 2024-06-28T12:28:46,942 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_qiskit_jupyter_notebook.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/interactive 2024-06-28T12:28:46,944 copying build/lib/galaxy/tools/bundled/interactive/simtext_app.R -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/interactive 2024-06-28T12:28:46,947 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_jupyter_notebook.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/interactive 2024-06-28T12:28:46,949 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_guacamole_desktop.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/interactive 2024-06-28T12:28:46,951 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_pyiron.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/interactive 2024-06-28T12:28:46,953 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_pavian.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/interactive 2024-06-28T12:28:46,955 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_rstudio.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/interactive 2024-06-28T12:28:46,957 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_metashark.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/interactive 2024-06-28T12:28:46,959 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_simtext_app.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/interactive 2024-06-28T12:28:46,960 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_cellxgene_0.16.2.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/interactive 2024-06-28T12:28:46,962 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_climate_notebook.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/interactive 2024-06-28T12:28:46,964 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_geoexplorer.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/interactive 2024-06-28T12:28:46,966 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_jupyter_notebook_1.0.0.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/interactive 2024-06-28T12:28:46,969 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_wallace.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/interactive 2024-06-28T12:28:46,970 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_vcf_iobio.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/interactive 2024-06-28T12:28:46,972 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_phinch.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/interactive 2024-06-28T12:28:46,973 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_bam_iobio.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/interactive 2024-06-28T12:28:46,975 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_paraview.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/interactive 2024-06-28T12:28:46,977 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_mgnify_notebook.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/interactive 2024-06-28T12:28:46,979 copying build/lib/galaxy/tools/bundled/interactive/default_notebook.ipynb -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/interactive 2024-06-28T12:28:46,981 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_ethercalc.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/interactive 2024-06-28T12:28:46,983 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_ml_jupyter_notebook.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/interactive 2024-06-28T12:28:46,985 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_hicbrowser.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/interactive 2024-06-28T12:28:46,987 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_askomics.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/interactive 2024-06-28T12:28:46,989 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_isee.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/interactive 2024-06-28T12:28:46,991 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_cellxgene_1.1.1.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/interactive 2024-06-28T12:28:46,994 creating build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/sr_assembly 2024-06-28T12:28:46,995 copying build/lib/galaxy/tools/bundled/sr_assembly/velveth.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/sr_assembly 2024-06-28T12:28:46,997 copying build/lib/galaxy/tools/bundled/sr_assembly/velvetg_wrapper.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/sr_assembly 2024-06-28T12:28:46,999 copying build/lib/galaxy/tools/bundled/sr_assembly/velveth_wrapper.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/sr_assembly 2024-06-28T12:28:47,001 copying build/lib/galaxy/tools/bundled/sr_assembly/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/sr_assembly 2024-06-28T12:28:47,002 copying build/lib/galaxy/tools/bundled/sr_assembly/velvetg.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/sr_assembly 2024-06-28T12:28:47,005 creating build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/next_gen_conversion 2024-06-28T12:28:47,006 copying build/lib/galaxy/tools/bundled/next_gen_conversion/solid2fastq.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/next_gen_conversion 2024-06-28T12:28:47,008 copying build/lib/galaxy/tools/bundled/next_gen_conversion/solid_to_fastq.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/next_gen_conversion 2024-06-28T12:28:47,010 copying build/lib/galaxy/tools/bundled/next_gen_conversion/solid2fastq.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/next_gen_conversion 2024-06-28T12:28:47,012 copying build/lib/galaxy/tools/bundled/next_gen_conversion/fastq_conversions.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/next_gen_conversion 2024-06-28T12:28:47,014 copying build/lib/galaxy/tools/bundled/next_gen_conversion/fastq_gen_conv.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/next_gen_conversion 2024-06-28T12:28:47,016 copying build/lib/galaxy/tools/bundled/next_gen_conversion/bwa_solid2fastq_modified.pl -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/next_gen_conversion 2024-06-28T12:28:47,017 copying build/lib/galaxy/tools/bundled/next_gen_conversion/solid_to_fastq.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/next_gen_conversion 2024-06-28T12:28:47,019 copying build/lib/galaxy/tools/bundled/next_gen_conversion/fastq_conversions.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/next_gen_conversion 2024-06-28T12:28:47,021 copying build/lib/galaxy/tools/bundled/next_gen_conversion/fastq_gen_conv.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/next_gen_conversion 2024-06-28T12:28:47,023 copying build/lib/galaxy/tools/keep_success_collection.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools 2024-06-28T12:28:47,025 copying build/lib/galaxy/tools/unzip_collection.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools 2024-06-28T12:28:47,027 creating build/bdist.linux-armv7l/wheel/galaxy/tools/util 2024-06-28T12:28:47,028 creating build/bdist.linux-armv7l/wheel/galaxy/tools/util/galaxyops 2024-06-28T12:28:47,029 copying build/lib/galaxy/tools/util/galaxyops/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/util/galaxyops 2024-06-28T12:28:47,031 copying build/lib/galaxy/tools/util/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/util 2024-06-28T12:28:47,032 copying build/lib/galaxy/tools/util/maf_utilities.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/util 2024-06-28T12:28:47,035 copying build/lib/galaxy/tools/build_list.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools 2024-06-28T12:28:47,037 copying build/lib/galaxy/tools/apply_rules.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools 2024-06-28T12:28:47,039 creating build/bdist.linux-armv7l/wheel/galaxy/tools/error_reports 2024-06-28T12:28:47,040 creating build/bdist.linux-armv7l/wheel/galaxy/tools/error_reports/plugins 2024-06-28T12:28:47,041 copying build/lib/galaxy/tools/error_reports/plugins/base_git.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/error_reports/plugins 2024-06-28T12:28:47,043 copying build/lib/galaxy/tools/error_reports/plugins/sentry.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/error_reports/plugins 2024-06-28T12:28:47,045 copying build/lib/galaxy/tools/error_reports/plugins/gitlab.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/error_reports/plugins 2024-06-28T12:28:47,048 copying build/lib/galaxy/tools/error_reports/plugins/github.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/error_reports/plugins 2024-06-28T12:28:47,050 copying build/lib/galaxy/tools/error_reports/plugins/email.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/error_reports/plugins 2024-06-28T12:28:47,052 copying build/lib/galaxy/tools/error_reports/plugins/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/error_reports/plugins 2024-06-28T12:28:47,053 copying build/lib/galaxy/tools/error_reports/plugins/json.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/error_reports/plugins 2024-06-28T12:28:47,055 copying build/lib/galaxy/tools/error_reports/plugins/influxdb.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/error_reports/plugins 2024-06-28T12:28:47,057 copying build/lib/galaxy/tools/error_reports/plugins/slack.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/error_reports/plugins 2024-06-28T12:28:47,059 copying build/lib/galaxy/tools/error_reports/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/error_reports 2024-06-28T12:28:47,061 copying build/lib/galaxy/tools/repositories.py -> build/bdist.linux-armv7l/wheel/galaxy/tools 2024-06-28T12:28:47,063 copying build/lib/galaxy/tools/filter_failed_collection.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools 2024-06-28T12:28:47,065 creating build/bdist.linux-armv7l/wheel/galaxy/tools/data 2024-06-28T12:28:47,066 copying build/lib/galaxy/tools/data/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/data 2024-06-28T12:28:47,068 creating build/bdist.linux-armv7l/wheel/galaxy/dependencies 2024-06-28T12:28:47,069 copying build/lib/galaxy/dependencies/lint-requirements.txt -> build/bdist.linux-armv7l/wheel/galaxy/dependencies 2024-06-28T12:28:47,071 copying build/lib/galaxy/dependencies/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/dependencies 2024-06-28T12:28:47,073 copying build/lib/galaxy/dependencies/update_lint_requirements.sh -> build/bdist.linux-armv7l/wheel/galaxy/dependencies 2024-06-28T12:28:47,074 copying build/lib/galaxy/dependencies/conditional-requirements.txt -> build/bdist.linux-armv7l/wheel/galaxy/dependencies 2024-06-28T12:28:47,076 copying build/lib/galaxy/dependencies/update.sh -> build/bdist.linux-armv7l/wheel/galaxy/dependencies 2024-06-28T12:28:47,078 copying build/lib/galaxy/dependencies/pinned-requirements.txt -> build/bdist.linux-armv7l/wheel/galaxy/dependencies 2024-06-28T12:28:47,080 copying build/lib/galaxy/dependencies/dev-requirements.txt -> build/bdist.linux-armv7l/wheel/galaxy/dependencies 2024-06-28T12:28:47,082 copying build/lib/galaxy/dependencies/pinned-typecheck-requirements.txt -> build/bdist.linux-armv7l/wheel/galaxy/dependencies 2024-06-28T12:28:47,084 copying build/lib/galaxy/dependencies/pinned-lint-requirements.txt -> build/bdist.linux-armv7l/wheel/galaxy/dependencies 2024-06-28T12:28:47,086 creating build/bdist.linux-armv7l/wheel/galaxy/jobs 2024-06-28T12:28:47,087 copying build/lib/galaxy/jobs/dynamic_tool_destination.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs 2024-06-28T12:28:47,090 copying build/lib/galaxy/jobs/stock_rules.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs 2024-06-28T12:28:47,092 copying build/lib/galaxy/jobs/command_factory.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs 2024-06-28T12:28:47,095 copying build/lib/galaxy/jobs/rule_helper.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs 2024-06-28T12:28:47,098 creating build/bdist.linux-armv7l/wheel/galaxy/jobs/splitters 2024-06-28T12:28:47,098 copying build/lib/galaxy/jobs/splitters/multi.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs/splitters 2024-06-28T12:28:47,101 copying build/lib/galaxy/jobs/splitters/basic.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs/splitters 2024-06-28T12:28:47,103 copying build/lib/galaxy/jobs/splitters/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs/splitters 2024-06-28T12:28:47,104 copying build/lib/galaxy/jobs/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs 2024-06-28T12:28:47,108 copying build/lib/galaxy/jobs/manager.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs 2024-06-28T12:28:47,110 copying build/lib/galaxy/jobs/handler.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs 2024-06-28T12:28:47,114 creating build/bdist.linux-armv7l/wheel/galaxy/jobs/rules 2024-06-28T12:28:47,115 copying build/lib/galaxy/jobs/rules/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs/rules 2024-06-28T12:28:47,116 copying build/lib/galaxy/jobs/mapper.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs 2024-06-28T12:28:47,119 creating build/bdist.linux-armv7l/wheel/galaxy/jobs/runners 2024-06-28T12:28:47,120 copying build/lib/galaxy/jobs/runners/chronos.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs/runners 2024-06-28T12:28:47,122 copying build/lib/galaxy/jobs/runners/pulsar.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs/runners 2024-06-28T12:28:47,126 copying build/lib/galaxy/jobs/runners/state_handler_factory.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs/runners 2024-06-28T12:28:47,127 copying build/lib/galaxy/jobs/runners/condor.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs/runners 2024-06-28T12:28:47,129 copying build/lib/galaxy/jobs/runners/kubernetes.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs/runners 2024-06-28T12:28:47,133 creating build/bdist.linux-armv7l/wheel/galaxy/jobs/runners/state_handlers 2024-06-28T12:28:47,133 copying build/lib/galaxy/jobs/runners/state_handlers/_safe_eval.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs/runners/state_handlers 2024-06-28T12:28:47,136 copying build/lib/galaxy/jobs/runners/state_handlers/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs/runners/state_handlers 2024-06-28T12:28:47,137 copying build/lib/galaxy/jobs/runners/state_handlers/resubmit.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs/runners/state_handlers 2024-06-28T12:28:47,139 copying build/lib/galaxy/jobs/runners/tasks.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs/runners 2024-06-28T12:28:47,141 copying build/lib/galaxy/jobs/runners/godocker.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs/runners 2024-06-28T12:28:47,144 copying build/lib/galaxy/jobs/runners/cli.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs/runners 2024-06-28T12:28:47,146 copying build/lib/galaxy/jobs/runners/slurm.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs/runners 2024-06-28T12:28:47,148 copying build/lib/galaxy/jobs/runners/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs/runners 2024-06-28T12:28:47,151 copying build/lib/galaxy/jobs/runners/drmaa.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs/runners 2024-06-28T12:28:47,153 copying build/lib/galaxy/jobs/runners/local.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs/runners 2024-06-28T12:28:47,156 copying build/lib/galaxy/jobs/runners/univa.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs/runners 2024-06-28T12:28:47,158 copying build/lib/galaxy/jobs/runners/pbs.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs/runners 2024-06-28T12:28:47,161 creating build/bdist.linux-armv7l/wheel/galaxy/jobs/runners/util 2024-06-28T12:28:47,162 copying build/lib/galaxy/jobs/runners/util/external.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs/runners/util 2024-06-28T12:28:47,165 creating build/bdist.linux-armv7l/wheel/galaxy/jobs/runners/util/cli 2024-06-28T12:28:47,166 copying build/lib/galaxy/jobs/runners/util/cli/factory.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs/runners/util/cli 2024-06-28T12:28:47,167 copying build/lib/galaxy/jobs/runners/util/cli/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs/runners/util/cli 2024-06-28T12:28:47,170 creating build/bdist.linux-armv7l/wheel/galaxy/jobs/runners/util/cli/job 2024-06-28T12:28:47,171 copying build/lib/galaxy/jobs/runners/util/cli/job/slurm_torque.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs/runners/util/cli/job 2024-06-28T12:28:47,173 copying build/lib/galaxy/jobs/runners/util/cli/job/lsf.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs/runners/util/cli/job 2024-06-28T12:28:47,175 copying build/lib/galaxy/jobs/runners/util/cli/job/torque.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs/runners/util/cli/job 2024-06-28T12:28:47,177 copying build/lib/galaxy/jobs/runners/util/cli/job/slurm.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs/runners/util/cli/job 2024-06-28T12:28:47,179 copying build/lib/galaxy/jobs/runners/util/cli/job/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs/runners/util/cli/job 2024-06-28T12:28:47,181 copying build/lib/galaxy/jobs/runners/util/cli/job/pbs.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs/runners/util/cli/job 2024-06-28T12:28:47,183 creating build/bdist.linux-armv7l/wheel/galaxy/jobs/runners/util/cli/shell 2024-06-28T12:28:47,184 copying build/lib/galaxy/jobs/runners/util/cli/shell/rsh.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs/runners/util/cli/shell 2024-06-28T12:28:47,186 copying build/lib/galaxy/jobs/runners/util/cli/shell/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs/runners/util/cli/shell 2024-06-28T12:28:47,188 copying build/lib/galaxy/jobs/runners/util/cli/shell/local.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs/runners/util/cli/shell 2024-06-28T12:28:47,190 copying build/lib/galaxy/jobs/runners/util/fork_safe_write.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs/runners/util 2024-06-28T12:28:47,191 copying build/lib/galaxy/jobs/runners/util/sudo.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs/runners/util 2024-06-28T12:28:47,193 copying build/lib/galaxy/jobs/runners/util/kill.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs/runners/util 2024-06-28T12:28:47,195 creating build/bdist.linux-armv7l/wheel/galaxy/jobs/runners/util/condor 2024-06-28T12:28:47,196 copying build/lib/galaxy/jobs/runners/util/condor/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs/runners/util/condor 2024-06-28T12:28:47,198 copying build/lib/galaxy/jobs/runners/util/process_groups.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs/runners/util 2024-06-28T12:28:47,200 creating build/bdist.linux-armv7l/wheel/galaxy/jobs/runners/util/job_script 2024-06-28T12:28:47,201 copying build/lib/galaxy/jobs/runners/util/job_script/MEMORY_STATEMENT_TEMPLATE.sh -> build/bdist.linux-armv7l/wheel/galaxy/jobs/runners/util/job_script 2024-06-28T12:28:47,203 copying build/lib/galaxy/jobs/runners/util/job_script/CLUSTER_SLOTS_STATEMENT.sh -> build/bdist.linux-armv7l/wheel/galaxy/jobs/runners/util/job_script 2024-06-28T12:28:47,205 copying build/lib/galaxy/jobs/runners/util/job_script/DEFAULT_JOB_FILE_TEMPLATE.sh -> build/bdist.linux-armv7l/wheel/galaxy/jobs/runners/util/job_script 2024-06-28T12:28:47,206 copying build/lib/galaxy/jobs/runners/util/job_script/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs/runners/util/job_script 2024-06-28T12:28:47,209 copying build/lib/galaxy/jobs/runners/util/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs/runners/util 2024-06-28T12:28:47,210 copying build/lib/galaxy/jobs/runners/util/pykube_util.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs/runners/util 2024-06-28T12:28:47,212 copying build/lib/galaxy/jobs/runners/util/env.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs/runners/util 2024-06-28T12:28:47,214 copying build/lib/galaxy/jobs/runners/aws.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs/runners 2024-06-28T12:28:47,217 copying build/lib/galaxy/main_config.py -> build/bdist.linux-armv7l/wheel/galaxy 2024-06-28T12:28:47,219 creating build/bdist.linux-armv7l/wheel/galaxy/carbon_emissions 2024-06-28T12:28:47,220 copying build/lib/galaxy/carbon_emissions/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/carbon_emissions 2024-06-28T12:28:47,222 creating build/bdist.linux-armv7l/wheel/galaxy/short_term_storage 2024-06-28T12:28:47,223 copying build/lib/galaxy/short_term_storage/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/short_term_storage 2024-06-28T12:28:47,225 copying build/lib/galaxy/py.typed -> build/bdist.linux-armv7l/wheel/galaxy 2024-06-28T12:28:47,226 copying build/lib/galaxy/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy 2024-06-28T12:28:47,228 creating build/bdist.linux-armv7l/wheel/galaxy/app_unittest_utils 2024-06-28T12:28:47,229 copying build/lib/galaxy/app_unittest_utils/galaxy_mock.py -> build/bdist.linux-armv7l/wheel/galaxy/app_unittest_utils 2024-06-28T12:28:47,232 copying build/lib/galaxy/app_unittest_utils/tools_support.py -> build/bdist.linux-armv7l/wheel/galaxy/app_unittest_utils 2024-06-28T12:28:47,234 copying build/lib/galaxy/app_unittest_utils/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/app_unittest_utils 2024-06-28T12:28:47,235 copying build/lib/galaxy/app_unittest_utils/toolbox_support.py -> build/bdist.linux-armv7l/wheel/galaxy/app_unittest_utils 2024-06-28T12:28:47,238 creating build/bdist.linux-armv7l/wheel/galaxy/visualization 2024-06-28T12:28:47,239 creating build/bdist.linux-armv7l/wheel/galaxy/visualization/plugins 2024-06-28T12:28:47,240 copying build/lib/galaxy/visualization/plugins/plugin.py -> build/bdist.linux-armv7l/wheel/galaxy/visualization/plugins 2024-06-28T12:28:47,243 copying build/lib/galaxy/visualization/plugins/utils.py -> build/bdist.linux-armv7l/wheel/galaxy/visualization/plugins 2024-06-28T12:28:47,244 copying build/lib/galaxy/visualization/plugins/resource_parser.py -> build/bdist.linux-armv7l/wheel/galaxy/visualization/plugins 2024-06-28T12:28:47,247 copying build/lib/galaxy/visualization/plugins/config_parser.py -> build/bdist.linux-armv7l/wheel/galaxy/visualization/plugins 2024-06-28T12:28:47,249 copying build/lib/galaxy/visualization/plugins/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/visualization/plugins 2024-06-28T12:28:47,250 copying build/lib/galaxy/visualization/plugins/registry.py -> build/bdist.linux-armv7l/wheel/galaxy/visualization/plugins 2024-06-28T12:28:47,253 creating build/bdist.linux-armv7l/wheel/galaxy/visualization/data_providers 2024-06-28T12:28:47,254 copying build/lib/galaxy/visualization/data_providers/genome.py -> build/bdist.linux-armv7l/wheel/galaxy/visualization/data_providers 2024-06-28T12:28:47,257 creating build/bdist.linux-armv7l/wheel/galaxy/visualization/data_providers/phyloviz 2024-06-28T12:28:47,258 copying build/lib/galaxy/visualization/data_providers/phyloviz/phyloxmlparser.py -> build/bdist.linux-armv7l/wheel/galaxy/visualization/data_providers/phyloviz 2024-06-28T12:28:47,260 copying build/lib/galaxy/visualization/data_providers/phyloviz/nexusparser.py -> build/bdist.linux-armv7l/wheel/galaxy/visualization/data_providers/phyloviz 2024-06-28T12:28:47,262 copying build/lib/galaxy/visualization/data_providers/phyloviz/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/visualization/data_providers/phyloviz 2024-06-28T12:28:47,264 copying build/lib/galaxy/visualization/data_providers/phyloviz/baseparser.py -> build/bdist.linux-armv7l/wheel/galaxy/visualization/data_providers/phyloviz 2024-06-28T12:28:47,266 copying build/lib/galaxy/visualization/data_providers/phyloviz/newickparser.py -> build/bdist.linux-armv7l/wheel/galaxy/visualization/data_providers/phyloviz 2024-06-28T12:28:47,268 copying build/lib/galaxy/visualization/data_providers/basic.py -> build/bdist.linux-armv7l/wheel/galaxy/visualization/data_providers 2024-06-28T12:28:47,270 copying build/lib/galaxy/visualization/data_providers/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/visualization/data_providers 2024-06-28T12:28:47,272 copying build/lib/galaxy/visualization/data_providers/registry.py -> build/bdist.linux-armv7l/wheel/galaxy/visualization/data_providers 2024-06-28T12:28:47,274 copying build/lib/galaxy/visualization/data_providers/cigar.py -> build/bdist.linux-armv7l/wheel/galaxy/visualization/data_providers 2024-06-28T12:28:47,276 creating build/bdist.linux-armv7l/wheel/galaxy/visualization/tracks 2024-06-28T12:28:47,277 copying build/lib/galaxy/visualization/tracks/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/visualization/tracks 2024-06-28T12:28:47,279 copying build/lib/galaxy/visualization/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/visualization 2024-06-28T12:28:47,281 creating build/bdist.linux-armv7l/wheel/galaxy/visualization/genome 2024-06-28T12:28:47,282 copying build/lib/galaxy/visualization/genome/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/visualization/genome 2024-06-28T12:28:47,284 copying build/lib/galaxy/visualization/genomes.py -> build/bdist.linux-armv7l/wheel/galaxy/visualization 2024-06-28T12:28:47,286 creating build/bdist.linux-armv7l/wheel/galaxy/forms 2024-06-28T12:28:47,287 copying build/lib/galaxy/forms/forms.py -> build/bdist.linux-armv7l/wheel/galaxy/forms 2024-06-28T12:28:47,290 copying build/lib/galaxy/forms/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/forms 2024-06-28T12:28:47,291 copying build/lib/galaxy/queue_worker.py -> build/bdist.linux-armv7l/wheel/galaxy 2024-06-28T12:28:47,294 creating build/bdist.linux-armv7l/wheel/galaxy/workflow 2024-06-28T12:28:47,295 copying build/lib/galaxy/workflow/modules.py -> build/bdist.linux-armv7l/wheel/galaxy/workflow 2024-06-28T12:28:47,300 creating build/bdist.linux-armv7l/wheel/galaxy/workflow/reports 2024-06-28T12:28:47,301 creating build/bdist.linux-armv7l/wheel/galaxy/workflow/reports/generators 2024-06-28T12:28:47,302 copying build/lib/galaxy/workflow/reports/generators/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/workflow/reports/generators 2024-06-28T12:28:47,304 copying build/lib/galaxy/workflow/reports/generators/markdown.py -> build/bdist.linux-armv7l/wheel/galaxy/workflow/reports/generators 2024-06-28T12:28:47,305 copying build/lib/galaxy/workflow/reports/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/workflow/reports 2024-06-28T12:28:47,307 copying build/lib/galaxy/workflow/run.py -> build/bdist.linux-armv7l/wheel/galaxy/workflow 2024-06-28T12:28:47,309 copying build/lib/galaxy/workflow/steps.py -> build/bdist.linux-armv7l/wheel/galaxy/workflow 2024-06-28T12:28:47,311 copying build/lib/galaxy/workflow/run_request.py -> build/bdist.linux-armv7l/wheel/galaxy/workflow 2024-06-28T12:28:47,314 creating build/bdist.linux-armv7l/wheel/galaxy/workflow/resources 2024-06-28T12:28:47,315 copying build/lib/galaxy/workflow/resources/example.py.sample -> build/bdist.linux-armv7l/wheel/galaxy/workflow/resources 2024-06-28T12:28:47,317 copying build/lib/galaxy/workflow/resources/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/workflow/resources 2024-06-28T12:28:47,319 creating build/bdist.linux-armv7l/wheel/galaxy/workflow/schedulers 2024-06-28T12:28:47,320 copying build/lib/galaxy/workflow/schedulers/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/workflow/schedulers 2024-06-28T12:28:47,322 copying build/lib/galaxy/workflow/schedulers/core.py -> build/bdist.linux-armv7l/wheel/galaxy/workflow/schedulers 2024-06-28T12:28:47,324 copying build/lib/galaxy/workflow/extract.py -> build/bdist.linux-armv7l/wheel/galaxy/workflow 2024-06-28T12:28:47,326 copying build/lib/galaxy/workflow/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/workflow 2024-06-28T12:28:47,327 copying build/lib/galaxy/workflow/render.py -> build/bdist.linux-armv7l/wheel/galaxy/workflow 2024-06-28T12:28:47,330 creating build/bdist.linux-armv7l/wheel/galaxy/workflow/refactor 2024-06-28T12:28:47,331 copying build/lib/galaxy/workflow/refactor/execute.py -> build/bdist.linux-armv7l/wheel/galaxy/workflow/refactor 2024-06-28T12:28:47,334 copying build/lib/galaxy/workflow/refactor/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/workflow/refactor 2024-06-28T12:28:47,335 copying build/lib/galaxy/workflow/refactor/schema.py -> build/bdist.linux-armv7l/wheel/galaxy/workflow/refactor 2024-06-28T12:28:47,338 copying build/lib/galaxy/workflow/trs_proxy.py -> build/bdist.linux-armv7l/wheel/galaxy/workflow 2024-06-28T12:28:47,340 copying build/lib/galaxy/workflow/scheduling_manager.py -> build/bdist.linux-armv7l/wheel/galaxy/workflow 2024-06-28T12:28:47,342 copying build/lib/galaxy/config_watchers.py -> build/bdist.linux-armv7l/wheel/galaxy 2024-06-28T12:28:47,344 copying build/lib/galaxy/main.py -> build/bdist.linux-armv7l/wheel/galaxy 2024-06-28T12:28:47,346 copying build/lib/galaxy/app.py -> build/bdist.linux-armv7l/wheel/galaxy 2024-06-28T12:28:47,349 creating build/bdist.linux-armv7l/wheel/galaxy/tool_shed 2024-06-28T12:28:47,351 creating build/bdist.linux-armv7l/wheel/galaxy/tool_shed/metadata 2024-06-28T12:28:47,352 copying build/lib/galaxy/tool_shed/metadata/metadata_generator.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_shed/metadata 2024-06-28T12:28:47,355 copying build/lib/galaxy/tool_shed/metadata/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_shed/metadata 2024-06-28T12:28:47,356 copying build/lib/galaxy/tool_shed/cache.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_shed 2024-06-28T12:28:47,358 creating build/bdist.linux-armv7l/wheel/galaxy/tool_shed/tools 2024-06-28T12:28:47,359 copying build/lib/galaxy/tool_shed/tools/tool_validator.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_shed/tools 2024-06-28T12:28:47,361 copying build/lib/galaxy/tool_shed/tools/data_table_manager.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_shed/tools 2024-06-28T12:28:47,364 copying build/lib/galaxy/tool_shed/tools/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_shed/tools 2024-06-28T12:28:47,365 copying build/lib/galaxy/tool_shed/repository_type.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_shed 2024-06-28T12:28:47,367 copying build/lib/galaxy/tool_shed/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_shed 2024-06-28T12:28:47,368 creating build/bdist.linux-armv7l/wheel/galaxy/tool_shed/unittest_utils 2024-06-28T12:28:47,369 copying build/lib/galaxy/tool_shed/unittest_utils/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_shed/unittest_utils 2024-06-28T12:28:47,372 creating build/bdist.linux-armv7l/wheel/galaxy/tool_shed/galaxy_install 2024-06-28T12:28:47,373 creating build/bdist.linux-armv7l/wheel/galaxy/tool_shed/galaxy_install/metadata 2024-06-28T12:28:47,374 copying build/lib/galaxy/tool_shed/galaxy_install/metadata/installed_repository_metadata_manager.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_shed/galaxy_install/metadata 2024-06-28T12:28:47,376 copying build/lib/galaxy/tool_shed/galaxy_install/metadata/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_shed/galaxy_install/metadata 2024-06-28T12:28:47,378 copying build/lib/galaxy/tool_shed/galaxy_install/installed_repository_manager.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_shed/galaxy_install 2024-06-28T12:28:47,381 creating build/bdist.linux-armv7l/wheel/galaxy/tool_shed/galaxy_install/repository_dependencies 2024-06-28T12:28:47,382 copying build/lib/galaxy/tool_shed/galaxy_install/repository_dependencies/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_shed/galaxy_install/repository_dependencies 2024-06-28T12:28:47,383 copying build/lib/galaxy/tool_shed/galaxy_install/repository_dependencies/repository_dependency_manager.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_shed/galaxy_install/repository_dependencies 2024-06-28T12:28:47,386 copying build/lib/galaxy/tool_shed/galaxy_install/install_manager.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_shed/galaxy_install 2024-06-28T12:28:47,389 copying build/lib/galaxy/tool_shed/galaxy_install/update_repository_manager.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_shed/galaxy_install 2024-06-28T12:28:47,391 creating build/bdist.linux-armv7l/wheel/galaxy/tool_shed/galaxy_install/tools 2024-06-28T12:28:47,392 copying build/lib/galaxy/tool_shed/galaxy_install/tools/tool_panel_manager.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_shed/galaxy_install/tools 2024-06-28T12:28:47,395 copying build/lib/galaxy/tool_shed/galaxy_install/tools/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_shed/galaxy_install/tools 2024-06-28T12:28:47,396 copying build/lib/galaxy/tool_shed/galaxy_install/tools/data_manager.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_shed/galaxy_install/tools 2024-06-28T12:28:47,399 copying build/lib/galaxy/tool_shed/galaxy_install/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_shed/galaxy_install 2024-06-28T12:28:47,400 copying build/lib/galaxy/tool_shed/galaxy_install/client.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_shed/galaxy_install 2024-06-28T12:28:47,402 creating build/bdist.linux-armv7l/wheel/galaxy/tool_shed/util 2024-06-28T12:28:47,403 copying build/lib/galaxy/tool_shed/util/metadata_util.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_shed/util 2024-06-28T12:28:47,405 copying build/lib/galaxy/tool_shed/util/dependency_display.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_shed/util 2024-06-28T12:28:47,408 copying build/lib/galaxy/tool_shed/util/hg_util.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_shed/util 2024-06-28T12:28:47,410 copying build/lib/galaxy/tool_shed/util/utility_container_manager.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_shed/util 2024-06-28T12:28:47,412 copying build/lib/galaxy/tool_shed/util/repository_util.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_shed/util 2024-06-28T12:28:47,415 copying build/lib/galaxy/tool_shed/util/tool_dependency_util.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_shed/util 2024-06-28T12:28:47,418 copying build/lib/galaxy/tool_shed/util/container_util.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_shed/util 2024-06-28T12:28:47,419 copying build/lib/galaxy/tool_shed/util/shed_util_common.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_shed/util 2024-06-28T12:28:47,422 copying build/lib/galaxy/tool_shed/util/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_shed/util 2024-06-28T12:28:47,423 copying build/lib/galaxy/tool_shed/util/basic_util.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_shed/util 2024-06-28T12:28:47,425 copying build/lib/galaxy/tool_shed/util/tool_util.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_shed/util 2024-06-28T12:28:47,427 creating build/bdist.linux-armv7l/wheel/galaxy_ext 2024-06-28T12:28:47,428 creating build/bdist.linux-armv7l/wheel/galaxy_ext/metadata 2024-06-28T12:28:47,429 copying build/lib/galaxy_ext/metadata/set_metadata.py -> build/bdist.linux-armv7l/wheel/galaxy_ext/metadata 2024-06-28T12:28:47,431 copying build/lib/galaxy_ext/metadata/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy_ext/metadata 2024-06-28T12:28:47,433 creating build/bdist.linux-armv7l/wheel/galaxy_ext/expressions 2024-06-28T12:28:47,434 copying build/lib/galaxy_ext/expressions/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy_ext/expressions 2024-06-28T12:28:47,435 copying build/lib/galaxy_ext/expressions/handle_job.py -> build/bdist.linux-armv7l/wheel/galaxy_ext/expressions 2024-06-28T12:28:47,438 creating build/bdist.linux-armv7l/wheel/galaxy_ext/container_monitor 2024-06-28T12:28:47,438 copying build/lib/galaxy_ext/container_monitor/monitor.py -> build/bdist.linux-armv7l/wheel/galaxy_ext/container_monitor 2024-06-28T12:28:47,440 copying build/lib/galaxy_ext/container_monitor/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy_ext/container_monitor 2024-06-28T12:28:47,441 copying build/lib/galaxy_ext/py.typed -> build/bdist.linux-armv7l/wheel/galaxy_ext 2024-06-28T12:28:47,443 copying build/lib/galaxy_ext/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy_ext 2024-06-28T12:28:47,445 creating build/bdist.linux-armv7l/wheel/tool_shed_client 2024-06-28T12:28:47,446 creating build/bdist.linux-armv7l/wheel/tool_shed_client/schema 2024-06-28T12:28:47,447 copying build/lib/tool_shed_client/schema/__init__.py -> build/bdist.linux-armv7l/wheel/tool_shed_client/schema 2024-06-28T12:28:47,450 copying build/lib/tool_shed_client/schema/trs_service_info.py -> build/bdist.linux-armv7l/wheel/tool_shed_client/schema 2024-06-28T12:28:47,451 copying build/lib/tool_shed_client/schema/trs.py -> build/bdist.linux-armv7l/wheel/tool_shed_client/schema 2024-06-28T12:28:47,454 copying build/lib/tool_shed_client/trs_util.py -> build/bdist.linux-armv7l/wheel/tool_shed_client 2024-06-28T12:28:47,455 copying build/lib/tool_shed_client/py.typed -> build/bdist.linux-armv7l/wheel/tool_shed_client 2024-06-28T12:28:47,457 copying build/lib/tool_shed_client/__init__.py -> build/bdist.linux-armv7l/wheel/tool_shed_client 2024-06-28T12:28:47,458 running install_egg_info 2024-06-28T12:28:47,468 Copying galaxy_app.egg-info to build/bdist.linux-armv7l/wheel/galaxy_app-24.0.3-py3.11.egg-info 2024-06-28T12:28:47,480 running install_scripts 2024-06-28T12:28:47,512 creating build/bdist.linux-armv7l/wheel/galaxy_app-24.0.3.dist-info/WHEEL 2024-06-28T12:28:47,514 creating '/tmp/pip-wheel-4zxps6bf/.tmp-oqfhp5j9/galaxy_app-24.0.3-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2024-06-28T12:28:47,517 adding 'galaxy/__init__.py' 2024-06-28T12:28:47,521 adding 'galaxy/app.py' 2024-06-28T12:28:47,523 adding 'galaxy/config_watchers.py' 2024-06-28T12:28:47,524 adding 'galaxy/di.py' 2024-06-28T12:28:47,526 adding 'galaxy/main.py' 2024-06-28T12:28:47,528 adding 'galaxy/main_config.py' 2024-06-28T12:28:47,529 adding 'galaxy/py.typed' 2024-06-28T12:28:47,531 adding 'galaxy/queue_worker.py' 2024-06-28T12:28:47,533 adding 'galaxy/queues.py' 2024-06-28T12:28:47,534 adding 'galaxy/structured_app.py' 2024-06-28T12:28:47,536 adding 'galaxy/actions/__init__.py' 2024-06-28T12:28:47,538 adding 'galaxy/actions/library.py' 2024-06-28T12:28:47,540 adding 'galaxy/app_unittest_utils/__init__.py' 2024-06-28T12:28:47,542 adding 'galaxy/app_unittest_utils/galaxy_mock.py' 2024-06-28T12:28:47,543 adding 'galaxy/app_unittest_utils/toolbox_support.py' 2024-06-28T12:28:47,545 adding 'galaxy/app_unittest_utils/tools_support.py' 2024-06-28T12:28:47,547 adding 'galaxy/authnz/__init__.py' 2024-06-28T12:28:47,550 adding 'galaxy/authnz/custos_authnz.py' 2024-06-28T12:28:47,553 adding 'galaxy/authnz/managers.py' 2024-06-28T12:28:47,556 adding 'galaxy/authnz/psa_authnz.py' 2024-06-28T12:28:47,557 adding 'galaxy/authnz/util.py' 2024-06-28T12:28:47,558 adding 'galaxy/carbon_emissions/__init__.py' 2024-06-28T12:28:47,560 adding 'galaxy/celery/__init__.py' 2024-06-28T12:28:47,561 adding 'galaxy/celery/_serialization.py' 2024-06-28T12:28:47,563 adding 'galaxy/celery/base_task.py' 2024-06-28T12:28:47,565 adding 'galaxy/celery/tasks.py' 2024-06-28T12:28:47,568 adding 'galaxy/dependencies/__init__.py' 2024-06-28T12:28:47,569 adding 'galaxy/dependencies/conditional-requirements.txt' 2024-06-28T12:28:47,571 adding 'galaxy/dependencies/dev-requirements.txt' 2024-06-28T12:28:47,572 adding 'galaxy/dependencies/lint-requirements.txt' 2024-06-28T12:28:47,573 adding 'galaxy/dependencies/pinned-lint-requirements.txt' 2024-06-28T12:28:47,575 adding 'galaxy/dependencies/pinned-requirements.txt' 2024-06-28T12:28:47,576 adding 'galaxy/dependencies/pinned-typecheck-requirements.txt' 2024-06-28T12:28:47,577 adding 'galaxy/dependencies/update.sh' 2024-06-28T12:28:47,578 adding 'galaxy/dependencies/update_lint_requirements.sh' 2024-06-28T12:28:47,580 adding 'galaxy/forms/__init__.py' 2024-06-28T12:28:47,581 adding 'galaxy/forms/forms.py' 2024-06-28T12:28:47,597 adding 'galaxy/jobs/__init__.py' 2024-06-28T12:28:47,600 adding 'galaxy/jobs/command_factory.py' 2024-06-28T12:28:47,611 adding 'galaxy/jobs/dynamic_tool_destination.py' 2024-06-28T12:28:47,621 adding 'galaxy/jobs/handler.py' 2024-06-28T12:28:47,624 adding 'galaxy/jobs/manager.py' 2024-06-28T12:28:47,626 adding 'galaxy/jobs/mapper.py' 2024-06-28T12:28:47,629 adding 'galaxy/jobs/rule_helper.py' 2024-06-28T12:28:47,630 adding 'galaxy/jobs/stock_rules.py' 2024-06-28T12:28:47,632 adding 'galaxy/jobs/rules/__init__.py' 2024-06-28T12:28:47,640 adding 'galaxy/jobs/runners/__init__.py' 2024-06-28T12:28:47,644 adding 'galaxy/jobs/runners/aws.py' 2024-06-28T12:28:47,647 adding 'galaxy/jobs/runners/chronos.py' 2024-06-28T12:28:47,649 adding 'galaxy/jobs/runners/cli.py' 2024-06-28T12:28:47,652 adding 'galaxy/jobs/runners/condor.py' 2024-06-28T12:28:47,656 adding 'galaxy/jobs/runners/drmaa.py' 2024-06-28T12:28:47,660 adding 'galaxy/jobs/runners/godocker.py' 2024-06-28T12:28:47,668 adding 'galaxy/jobs/runners/kubernetes.py' 2024-06-28T12:28:47,671 adding 'galaxy/jobs/runners/local.py' 2024-06-28T12:28:47,675 adding 'galaxy/jobs/runners/pbs.py' 2024-06-28T12:28:47,684 adding 'galaxy/jobs/runners/pulsar.py' 2024-06-28T12:28:47,687 adding 'galaxy/jobs/runners/slurm.py' 2024-06-28T12:28:47,689 adding 'galaxy/jobs/runners/state_handler_factory.py' 2024-06-28T12:28:47,691 adding 'galaxy/jobs/runners/tasks.py' 2024-06-28T12:28:47,697 adding 'galaxy/jobs/runners/univa.py' 2024-06-28T12:28:47,699 adding 'galaxy/jobs/runners/state_handlers/__init__.py' 2024-06-28T12:28:47,700 adding 'galaxy/jobs/runners/state_handlers/_safe_eval.py' 2024-06-28T12:28:47,702 adding 'galaxy/jobs/runners/state_handlers/resubmit.py' 2024-06-28T12:28:47,704 adding 'galaxy/jobs/runners/util/__init__.py' 2024-06-28T12:28:47,705 adding 'galaxy/jobs/runners/util/env.py' 2024-06-28T12:28:47,706 adding 'galaxy/jobs/runners/util/external.py' 2024-06-28T12:28:47,708 adding 'galaxy/jobs/runners/util/fork_safe_write.py' 2024-06-28T12:28:47,709 adding 'galaxy/jobs/runners/util/kill.py' 2024-06-28T12:28:47,710 adding 'galaxy/jobs/runners/util/process_groups.py' 2024-06-28T12:28:47,712 adding 'galaxy/jobs/runners/util/pykube_util.py' 2024-06-28T12:28:47,713 adding 'galaxy/jobs/runners/util/sudo.py' 2024-06-28T12:28:47,715 adding 'galaxy/jobs/runners/util/cli/__init__.py' 2024-06-28T12:28:47,716 adding 'galaxy/jobs/runners/util/cli/factory.py' 2024-06-28T12:28:47,718 adding 'galaxy/jobs/runners/util/cli/job/__init__.py' 2024-06-28T12:28:47,719 adding 'galaxy/jobs/runners/util/cli/job/lsf.py' 2024-06-28T12:28:47,720 adding 'galaxy/jobs/runners/util/cli/job/pbs.py' 2024-06-28T12:28:47,722 adding 'galaxy/jobs/runners/util/cli/job/slurm.py' 2024-06-28T12:28:47,723 adding 'galaxy/jobs/runners/util/cli/job/slurm_torque.py' 2024-06-28T12:28:47,724 adding 'galaxy/jobs/runners/util/cli/job/torque.py' 2024-06-28T12:28:47,726 adding 'galaxy/jobs/runners/util/cli/shell/__init__.py' 2024-06-28T12:28:47,727 adding 'galaxy/jobs/runners/util/cli/shell/local.py' 2024-06-28T12:28:47,728 adding 'galaxy/jobs/runners/util/cli/shell/rsh.py' 2024-06-28T12:28:47,730 adding 'galaxy/jobs/runners/util/condor/__init__.py' 2024-06-28T12:28:47,732 adding 'galaxy/jobs/runners/util/job_script/CLUSTER_SLOTS_STATEMENT.sh' 2024-06-28T12:28:47,733 adding 'galaxy/jobs/runners/util/job_script/DEFAULT_JOB_FILE_TEMPLATE.sh' 2024-06-28T12:28:47,734 adding 'galaxy/jobs/runners/util/job_script/MEMORY_STATEMENT_TEMPLATE.sh' 2024-06-28T12:28:47,736 adding 'galaxy/jobs/runners/util/job_script/__init__.py' 2024-06-28T12:28:47,737 adding 'galaxy/jobs/splitters/__init__.py' 2024-06-28T12:28:47,738 adding 'galaxy/jobs/splitters/basic.py' 2024-06-28T12:28:47,740 adding 'galaxy/jobs/splitters/multi.py' 2024-06-28T12:28:47,743 adding 'galaxy/managers/__init__.py' 2024-06-28T12:28:47,744 adding 'galaxy/managers/annotatable.py' 2024-06-28T12:28:47,745 adding 'galaxy/managers/api_keys.py' 2024-06-28T12:28:47,753 adding 'galaxy/managers/base.py' 2024-06-28T12:28:47,754 adding 'galaxy/managers/citations.py' 2024-06-28T12:28:47,757 adding 'galaxy/managers/cloud.py' 2024-06-28T12:28:47,758 adding 'galaxy/managers/cloudauthzs.py' 2024-06-28T12:28:47,763 adding 'galaxy/managers/collections.py' 2024-06-28T12:28:47,765 adding 'galaxy/managers/collections_util.py' 2024-06-28T12:28:47,767 adding 'galaxy/managers/configuration.py' 2024-06-28T12:28:47,769 adding 'galaxy/managers/context.py' 2024-06-28T12:28:47,774 adding 'galaxy/managers/datasets.py' 2024-06-28T12:28:47,776 adding 'galaxy/managers/datatypes.py' 2024-06-28T12:28:47,777 adding 'galaxy/managers/dbkeys.py' 2024-06-28T12:28:47,779 adding 'galaxy/managers/deletable.py' 2024-06-28T12:28:47,780 adding 'galaxy/managers/display_applications.py' 2024-06-28T12:28:47,782 adding 'galaxy/managers/executables.py' 2024-06-28T12:28:47,783 adding 'galaxy/managers/export_tracker.py' 2024-06-28T12:28:47,786 adding 'galaxy/managers/folders.py' 2024-06-28T12:28:47,787 adding 'galaxy/managers/forms.py' 2024-06-28T12:28:47,788 adding 'galaxy/managers/genomes.py' 2024-06-28T12:28:47,790 adding 'galaxy/managers/group_roles.py' 2024-06-28T12:28:47,791 adding 'galaxy/managers/group_users.py' 2024-06-28T12:28:47,793 adding 'galaxy/managers/groups.py' 2024-06-28T12:28:47,796 adding 'galaxy/managers/hdas.py' 2024-06-28T12:28:47,798 adding 'galaxy/managers/hdcas.py' 2024-06-28T12:28:47,803 adding 'galaxy/managers/histories.py' 2024-06-28T12:28:47,808 adding 'galaxy/managers/history_contents.py' 2024-06-28T12:28:47,810 adding 'galaxy/managers/interactivetool.py' 2024-06-28T12:28:47,811 adding 'galaxy/managers/item_tags.py' 2024-06-28T12:28:47,813 adding 'galaxy/managers/job_connections.py' 2024-06-28T12:28:47,818 adding 'galaxy/managers/jobs.py' 2024-06-28T12:28:47,819 adding 'galaxy/managers/lddas.py' 2024-06-28T12:28:47,821 adding 'galaxy/managers/libraries.py' 2024-06-28T12:28:47,823 adding 'galaxy/managers/library_datasets.py' 2024-06-28T12:28:47,834 adding 'galaxy/managers/licenses.json' 2024-06-28T12:28:47,839 adding 'galaxy/managers/licenses.py' 2024-06-28T12:28:47,841 adding 'galaxy/managers/markdown_export_base.css' 2024-06-28T12:28:47,843 adding 'galaxy/managers/markdown_parse.py' 2024-06-28T12:28:47,847 adding 'galaxy/managers/markdown_util.py' 2024-06-28T12:28:47,849 adding 'galaxy/managers/metrics.py' 2024-06-28T12:28:47,851 adding 'galaxy/managers/model_stores.py' 2024-06-28T12:28:47,853 adding 'galaxy/managers/notification.py' 2024-06-28T12:28:47,856 adding 'galaxy/managers/pages.py' 2024-06-28T12:28:47,858 adding 'galaxy/managers/quotas.py' 2024-06-28T12:28:47,860 adding 'galaxy/managers/ratable.py' 2024-06-28T12:28:47,861 adding 'galaxy/managers/rbac_secured.py' 2024-06-28T12:28:47,863 adding 'galaxy/managers/remote_files.py' 2024-06-28T12:28:47,864 adding 'galaxy/managers/roles.py' 2024-06-28T12:28:47,866 adding 'galaxy/managers/secured.py' 2024-06-28T12:28:47,867 adding 'galaxy/managers/session.py' 2024-06-28T12:28:47,869 adding 'galaxy/managers/sharable.py' 2024-06-28T12:28:47,871 adding 'galaxy/managers/taggable.py' 2024-06-28T12:28:47,872 adding 'galaxy/managers/tags.py' 2024-06-28T12:28:47,873 adding 'galaxy/managers/tasks.py' 2024-06-28T12:28:47,875 adding 'galaxy/managers/tool_data.py' 2024-06-28T12:28:47,876 adding 'galaxy/managers/tools.py' 2024-06-28T12:28:47,881 adding 'galaxy/managers/users.py' 2024-06-28T12:28:47,883 adding 'galaxy/managers/visualizations.py' 2024-06-28T12:28:47,894 adding 'galaxy/managers/workflows.py' 2024-06-28T12:28:47,897 adding 'galaxy/short_term_storage/__init__.py' 2024-06-28T12:28:47,898 adding 'galaxy/tool_shed/__init__.py' 2024-06-28T12:28:47,900 adding 'galaxy/tool_shed/cache.py' 2024-06-28T12:28:47,901 adding 'galaxy/tool_shed/repository_type.py' 2024-06-28T12:28:47,902 adding 'galaxy/tool_shed/galaxy_install/__init__.py' 2024-06-28T12:28:47,904 adding 'galaxy/tool_shed/galaxy_install/client.py' 2024-06-28T12:28:47,909 adding 'galaxy/tool_shed/galaxy_install/install_manager.py' 2024-06-28T12:28:47,914 adding 'galaxy/tool_shed/galaxy_install/installed_repository_manager.py' 2024-06-28T12:28:47,916 adding 'galaxy/tool_shed/galaxy_install/update_repository_manager.py' 2024-06-28T12:28:47,917 adding 'galaxy/tool_shed/galaxy_install/metadata/__init__.py' 2024-06-28T12:28:47,919 adding 'galaxy/tool_shed/galaxy_install/metadata/installed_repository_metadata_manager.py' 2024-06-28T12:28:47,921 adding 'galaxy/tool_shed/galaxy_install/repository_dependencies/__init__.py' 2024-06-28T12:28:47,924 adding 'galaxy/tool_shed/galaxy_install/repository_dependencies/repository_dependency_manager.py' 2024-06-28T12:28:47,926 adding 'galaxy/tool_shed/galaxy_install/tools/__init__.py' 2024-06-28T12:28:47,928 adding 'galaxy/tool_shed/galaxy_install/tools/data_manager.py' 2024-06-28T12:28:47,931 adding 'galaxy/tool_shed/galaxy_install/tools/tool_panel_manager.py' 2024-06-28T12:28:47,933 adding 'galaxy/tool_shed/metadata/__init__.py' 2024-06-28T12:28:47,938 adding 'galaxy/tool_shed/metadata/metadata_generator.py' 2024-06-28T12:28:47,940 adding 'galaxy/tool_shed/tools/__init__.py' 2024-06-28T12:28:47,942 adding 'galaxy/tool_shed/tools/data_table_manager.py' 2024-06-28T12:28:47,943 adding 'galaxy/tool_shed/tools/tool_validator.py' 2024-06-28T12:28:47,945 adding 'galaxy/tool_shed/unittest_utils/__init__.py' 2024-06-28T12:28:47,947 adding 'galaxy/tool_shed/util/__init__.py' 2024-06-28T12:28:47,948 adding 'galaxy/tool_shed/util/basic_util.py' 2024-06-28T12:28:47,950 adding 'galaxy/tool_shed/util/container_util.py' 2024-06-28T12:28:47,952 adding 'galaxy/tool_shed/util/dependency_display.py' 2024-06-28T12:28:47,954 adding 'galaxy/tool_shed/util/hg_util.py' 2024-06-28T12:28:47,955 adding 'galaxy/tool_shed/util/metadata_util.py' 2024-06-28T12:28:47,959 adding 'galaxy/tool_shed/util/repository_util.py' 2024-06-28T12:28:47,961 adding 'galaxy/tool_shed/util/shed_util_common.py' 2024-06-28T12:28:47,963 adding 'galaxy/tool_shed/util/tool_dependency_util.py' 2024-06-28T12:28:47,965 adding 'galaxy/tool_shed/util/tool_util.py' 2024-06-28T12:28:47,969 adding 'galaxy/tool_shed/util/utility_container_manager.py' 2024-06-28T12:28:47,990 adding 'galaxy/tools/__init__.py' 2024-06-28T12:28:47,993 adding 'galaxy/tools/apply_rules.xml' 2024-06-28T12:28:47,994 adding 'galaxy/tools/biotools.py' 2024-06-28T12:28:47,995 adding 'galaxy/tools/build_list.xml' 2024-06-28T12:28:47,996 adding 'galaxy/tools/build_list_1.2.0.xml' 2024-06-28T12:28:47,998 adding 'galaxy/tools/cache.py' 2024-06-28T12:28:48,001 adding 'galaxy/tools/data_fetch.py' 2024-06-28T12:28:48,002 adding 'galaxy/tools/data_fetch.xml' 2024-06-28T12:28:48,004 adding 'galaxy/tools/duplicate_file_to_collection.xml' 2024-06-28T12:28:48,005 adding 'galaxy/tools/errors.py' 2024-06-28T12:28:48,010 adding 'galaxy/tools/evaluation.py' 2024-06-28T12:28:48,011 adding 'galaxy/tools/exception_handling.py' 2024-06-28T12:28:48,014 adding 'galaxy/tools/execute.py' 2024-06-28T12:28:48,016 adding 'galaxy/tools/extract_dataset.xml' 2024-06-28T12:28:48,017 adding 'galaxy/tools/filter_empty_collection.xml' 2024-06-28T12:28:48,019 adding 'galaxy/tools/filter_failed_collection.xml' 2024-06-28T12:28:48,020 adding 'galaxy/tools/filter_from_file.xml' 2024-06-28T12:28:48,021 adding 'galaxy/tools/flatten_collection.xml' 2024-06-28T12:28:48,023 adding 'galaxy/tools/harmonize_two_collections_list.xml' 2024-06-28T12:28:48,024 adding 'galaxy/tools/keep_success_collection.xml' 2024-06-28T12:28:48,026 adding 'galaxy/tools/merge_collection.xml' 2024-06-28T12:28:48,028 adding 'galaxy/tools/recommendations.py' 2024-06-28T12:28:48,030 adding 'galaxy/tools/relabel_from_file.xml' 2024-06-28T12:28:48,031 adding 'galaxy/tools/remote_tool_eval.py' 2024-06-28T12:28:48,032 adding 'galaxy/tools/repositories.py' 2024-06-28T12:28:48,034 adding 'galaxy/tools/sort_collection_list.xml' 2024-06-28T12:28:48,035 adding 'galaxy/tools/special_tools.py' 2024-06-28T12:28:48,036 adding 'galaxy/tools/tag_collection_from_file.xml' 2024-06-28T12:28:48,039 adding 'galaxy/tools/test.py' 2024-06-28T12:28:48,040 adding 'galaxy/tools/unzip_collection.xml' 2024-06-28T12:28:48,044 adding 'galaxy/tools/wrappers.py' 2024-06-28T12:28:48,045 adding 'galaxy/tools/zip_collection.xml' 2024-06-28T12:28:48,053 adding 'galaxy/tools/actions/__init__.py' 2024-06-28T12:28:48,054 adding 'galaxy/tools/actions/data_manager.py' 2024-06-28T12:28:48,056 adding 'galaxy/tools/actions/data_source.py' 2024-06-28T12:28:48,057 adding 'galaxy/tools/actions/history_imp_exp.py' 2024-06-28T12:28:48,059 adding 'galaxy/tools/actions/metadata.py' 2024-06-28T12:28:48,060 adding 'galaxy/tools/actions/model_operations.py' 2024-06-28T12:28:48,062 adding 'galaxy/tools/actions/upload.py' 2024-06-28T12:28:48,064 adding 'galaxy/tools/actions/upload_common.py' 2024-06-28T12:28:48,066 adding 'galaxy/tools/bundled/__init__.py' 2024-06-28T12:28:48,068 adding 'galaxy/tools/bundled/data_export/export_remote.py' 2024-06-28T12:28:48,069 adding 'galaxy/tools/bundled/data_export/export_remote.xml' 2024-06-28T12:28:48,071 adding 'galaxy/tools/bundled/data_export/send.py' 2024-06-28T12:28:48,072 adding 'galaxy/tools/bundled/data_export/send.xml' 2024-06-28T12:28:48,074 adding 'galaxy/tools/bundled/data_source/__init__.py' 2024-06-28T12:28:48,075 adding 'galaxy/tools/bundled/data_source/access_libraries.xml' 2024-06-28T12:28:48,077 adding 'galaxy/tools/bundled/data_source/biomart.xml' 2024-06-28T12:28:48,078 adding 'galaxy/tools/bundled/data_source/biomart_test.xml' 2024-06-28T12:28:48,079 adding 'galaxy/tools/bundled/data_source/cbi_rice_mart.xml' 2024-06-28T12:28:48,081 adding 'galaxy/tools/bundled/data_source/data_source.py' 2024-06-28T12:28:48,082 adding 'galaxy/tools/bundled/data_source/ebi_sra.xml' 2024-06-28T12:28:48,083 adding 'galaxy/tools/bundled/data_source/eupathdb.xml' 2024-06-28T12:28:48,084 adding 'galaxy/tools/bundled/data_source/fly_modencode.xml' 2024-06-28T12:28:48,086 adding 'galaxy/tools/bundled/data_source/flymine.xml' 2024-06-28T12:28:48,087 adding 'galaxy/tools/bundled/data_source/flymine_test.xml' 2024-06-28T12:28:48,088 adding 'galaxy/tools/bundled/data_source/genbank.py' 2024-06-28T12:28:48,089 adding 'galaxy/tools/bundled/data_source/genbank.xml' 2024-06-28T12:28:48,090 adding 'galaxy/tools/bundled/data_source/gramene_mart.xml' 2024-06-28T12:28:48,092 adding 'galaxy/tools/bundled/data_source/hapmapmart.xml' 2024-06-28T12:28:48,093 adding 'galaxy/tools/bundled/data_source/hbvar.xml' 2024-06-28T12:28:48,094 adding 'galaxy/tools/bundled/data_source/import.py' 2024-06-28T12:28:48,095 adding 'galaxy/tools/bundled/data_source/import.xml' 2024-06-28T12:28:48,096 adding 'galaxy/tools/bundled/data_source/intermine.xml' 2024-06-28T12:28:48,097 adding 'galaxy/tools/bundled/data_source/metabolicmine.xml' 2024-06-28T12:28:48,099 adding 'galaxy/tools/bundled/data_source/microbial_import.py' 2024-06-28T12:28:48,100 adding 'galaxy/tools/bundled/data_source/microbial_import.xml' 2024-06-28T12:28:48,101 adding 'galaxy/tools/bundled/data_source/microbial_import_code.py' 2024-06-28T12:28:48,103 adding 'galaxy/tools/bundled/data_source/modmine.xml' 2024-06-28T12:28:48,104 adding 'galaxy/tools/bundled/data_source/mousemine.xml' 2024-06-28T12:28:48,105 adding 'galaxy/tools/bundled/data_source/ncbi_datasets.xml' 2024-06-28T12:28:48,106 adding 'galaxy/tools/bundled/data_source/ratmine.xml' 2024-06-28T12:28:48,108 adding 'galaxy/tools/bundled/data_source/sra.xml' 2024-06-28T12:28:48,109 adding 'galaxy/tools/bundled/data_source/ucsc_tablebrowser.xml' 2024-06-28T12:28:48,110 adding 'galaxy/tools/bundled/data_source/ucsc_tablebrowser_archaea.xml' 2024-06-28T12:28:48,111 adding 'galaxy/tools/bundled/data_source/ucsc_tablebrowser_test.xml' 2024-06-28T12:28:48,113 adding 'galaxy/tools/bundled/data_source/upload.py' 2024-06-28T12:28:48,115 adding 'galaxy/tools/bundled/data_source/upload.xml' 2024-06-28T12:28:48,117 adding 'galaxy/tools/bundled/data_source/worm_modencode.xml' 2024-06-28T12:28:48,118 adding 'galaxy/tools/bundled/data_source/wormbase.xml' 2024-06-28T12:28:48,119 adding 'galaxy/tools/bundled/data_source/wormbase_test.xml' 2024-06-28T12:28:48,120 adding 'galaxy/tools/bundled/data_source/yeastmine.xml' 2024-06-28T12:28:48,121 adding 'galaxy/tools/bundled/data_source/zebrafishmine.xml' 2024-06-28T12:28:48,123 adding 'galaxy/tools/bundled/expression_tools/expression_macros.xml' 2024-06-28T12:28:48,124 adding 'galaxy/tools/bundled/expression_tools/parse_values_from_file.xml' 2024-06-28T12:28:48,126 adding 'galaxy/tools/bundled/expression_tools/pick_value.xml' 2024-06-28T12:28:48,128 adding 'galaxy/tools/bundled/extract/__init__.py' 2024-06-28T12:28:48,130 adding 'galaxy/tools/bundled/extract/extract_genomic_dna.py' 2024-06-28T12:28:48,132 adding 'galaxy/tools/bundled/extract/extract_genomic_dna.xml' 2024-06-28T12:28:48,133 adding 'galaxy/tools/bundled/extract/liftOver_wrapper.py' 2024-06-28T12:28:48,135 adding 'galaxy/tools/bundled/extract/liftOver_wrapper.xml' 2024-06-28T12:28:48,137 adding 'galaxy/tools/bundled/filters/CreateInterval.pl' 2024-06-28T12:28:48,139 adding 'galaxy/tools/bundled/filters/CreateInterval.xml' 2024-06-28T12:28:48,140 adding 'galaxy/tools/bundled/filters/__init__.py' 2024-06-28T12:28:48,141 adding 'galaxy/tools/bundled/filters/axt_to_concat_fasta.py' 2024-06-28T12:28:48,142 adding 'galaxy/tools/bundled/filters/axt_to_concat_fasta.xml' 2024-06-28T12:28:48,144 adding 'galaxy/tools/bundled/filters/axt_to_fasta.py' 2024-06-28T12:28:48,145 adding 'galaxy/tools/bundled/filters/axt_to_fasta.xml' 2024-06-28T12:28:48,147 adding 'galaxy/tools/bundled/filters/axt_to_lav.py' 2024-06-28T12:28:48,148 adding 'galaxy/tools/bundled/filters/axt_to_lav.xml' 2024-06-28T12:28:48,149 adding 'galaxy/tools/bundled/filters/axt_to_lav_code.py' 2024-06-28T12:28:48,151 adding 'galaxy/tools/bundled/filters/bed2gff.xml' 2024-06-28T12:28:48,152 adding 'galaxy/tools/bundled/filters/bed_to_bigbed.xml' 2024-06-28T12:28:48,153 adding 'galaxy/tools/bundled/filters/bed_to_gff_converter.py' 2024-06-28T12:28:48,155 adding 'galaxy/tools/bundled/filters/catWrapper.py' 2024-06-28T12:28:48,156 adding 'galaxy/tools/bundled/filters/catWrapper.xml' 2024-06-28T12:28:48,157 adding 'galaxy/tools/bundled/filters/changeCase.pl' 2024-06-28T12:28:48,158 adding 'galaxy/tools/bundled/filters/changeCase.xml' 2024-06-28T12:28:48,159 adding 'galaxy/tools/bundled/filters/commWrapper.pl' 2024-06-28T12:28:48,160 adding 'galaxy/tools/bundled/filters/commWrapper.xml' 2024-06-28T12:28:48,161 adding 'galaxy/tools/bundled/filters/compare.xml' 2024-06-28T12:28:48,163 adding 'galaxy/tools/bundled/filters/condense_characters.pl' 2024-06-28T12:28:48,164 adding 'galaxy/tools/bundled/filters/condense_characters.xml' 2024-06-28T12:28:48,165 adding 'galaxy/tools/bundled/filters/convert_characters.py' 2024-06-28T12:28:48,166 adding 'galaxy/tools/bundled/filters/convert_characters.xml' 2024-06-28T12:28:48,167 adding 'galaxy/tools/bundled/filters/cutWrapper.pl' 2024-06-28T12:28:48,169 adding 'galaxy/tools/bundled/filters/cutWrapper.xml' 2024-06-28T12:28:48,170 adding 'galaxy/tools/bundled/filters/fileGrep.xml' 2024-06-28T12:28:48,171 adding 'galaxy/tools/bundled/filters/fixedValueColumn.pl' 2024-06-28T12:28:48,172 adding 'galaxy/tools/bundled/filters/fixedValueColumn.xml' 2024-06-28T12:28:48,174 adding 'galaxy/tools/bundled/filters/gff2bed.xml' 2024-06-28T12:28:48,175 adding 'galaxy/tools/bundled/filters/gff_to_bed_converter.py' 2024-06-28T12:28:48,177 adding 'galaxy/tools/bundled/filters/grep.py' 2024-06-28T12:28:48,178 adding 'galaxy/tools/bundled/filters/grep.xml' 2024-06-28T12:28:48,179 adding 'galaxy/tools/bundled/filters/grep_1.0.1.xml' 2024-06-28T12:28:48,181 adding 'galaxy/tools/bundled/filters/gtf2bedgraph.xml' 2024-06-28T12:28:48,182 adding 'galaxy/tools/bundled/filters/gtf_to_bedgraph_converter.py' 2024-06-28T12:28:48,183 adding 'galaxy/tools/bundled/filters/headWrapper.xml' 2024-06-28T12:28:48,185 adding 'galaxy/tools/bundled/filters/join.py' 2024-06-28T12:28:48,187 adding 'galaxy/tools/bundled/filters/joinWrapper.py' 2024-06-28T12:28:48,188 adding 'galaxy/tools/bundled/filters/joiner.xml' 2024-06-28T12:28:48,190 adding 'galaxy/tools/bundled/filters/joiner2.xml' 2024-06-28T12:28:48,191 adding 'galaxy/tools/bundled/filters/lav_to_bed.py' 2024-06-28T12:28:48,192 adding 'galaxy/tools/bundled/filters/lav_to_bed.xml' 2024-06-28T12:28:48,193 adding 'galaxy/tools/bundled/filters/lav_to_bed_code.py' 2024-06-28T12:28:48,194 adding 'galaxy/tools/bundled/filters/mergeCols.py' 2024-06-28T12:28:48,196 adding 'galaxy/tools/bundled/filters/mergeCols.xml' 2024-06-28T12:28:48,197 adding 'galaxy/tools/bundled/filters/pasteWrapper.pl' 2024-06-28T12:28:48,198 adding 'galaxy/tools/bundled/filters/pasteWrapper.xml' 2024-06-28T12:28:48,200 adding 'galaxy/tools/bundled/filters/random_lines_two_pass.py' 2024-06-28T12:28:48,201 adding 'galaxy/tools/bundled/filters/randomlines.py' 2024-06-28T12:28:48,202 adding 'galaxy/tools/bundled/filters/randomlines.xml' 2024-06-28T12:28:48,203 adding 'galaxy/tools/bundled/filters/remove_beginning.pl' 2024-06-28T12:28:48,204 adding 'galaxy/tools/bundled/filters/remove_beginning.xml' 2024-06-28T12:28:48,206 adding 'galaxy/tools/bundled/filters/secure_hash_message_digest.py' 2024-06-28T12:28:48,207 adding 'galaxy/tools/bundled/filters/secure_hash_message_digest.xml' 2024-06-28T12:28:48,213 adding 'galaxy/tools/bundled/filters/sff_extract.py' 2024-06-28T12:28:48,214 adding 'galaxy/tools/bundled/filters/sff_extractor.xml' 2024-06-28T12:28:48,216 adding 'galaxy/tools/bundled/filters/sorter.py' 2024-06-28T12:28:48,217 adding 'galaxy/tools/bundled/filters/sorter.xml' 2024-06-28T12:28:48,219 adding 'galaxy/tools/bundled/filters/tailWrapper.xml' 2024-06-28T12:28:48,220 adding 'galaxy/tools/bundled/filters/trimmer.py' 2024-06-28T12:28:48,222 adding 'galaxy/tools/bundled/filters/trimmer.xml' 2024-06-28T12:28:48,223 adding 'galaxy/tools/bundled/filters/ucsc_gene_bed_to_exon_bed.py' 2024-06-28T12:28:48,224 adding 'galaxy/tools/bundled/filters/ucsc_gene_bed_to_exon_bed.xml' 2024-06-28T12:28:48,226 adding 'galaxy/tools/bundled/filters/ucsc_gene_bed_to_intron_bed.py' 2024-06-28T12:28:48,227 adding 'galaxy/tools/bundled/filters/ucsc_gene_bed_to_intron_bed.xml' 2024-06-28T12:28:48,228 adding 'galaxy/tools/bundled/filters/ucsc_gene_table_to_intervals.py' 2024-06-28T12:28:48,229 adding 'galaxy/tools/bundled/filters/ucsc_gene_table_to_intervals.xml' 2024-06-28T12:28:48,231 adding 'galaxy/tools/bundled/filters/uniq.py' 2024-06-28T12:28:48,232 adding 'galaxy/tools/bundled/filters/uniq.xml' 2024-06-28T12:28:48,233 adding 'galaxy/tools/bundled/filters/wc_gnu.xml' 2024-06-28T12:28:48,234 adding 'galaxy/tools/bundled/filters/wig_to_bigwig.xml' 2024-06-28T12:28:48,236 adding 'galaxy/tools/bundled/filters/wiggle_to_simple.py' 2024-06-28T12:28:48,237 adding 'galaxy/tools/bundled/filters/wiggle_to_simple.xml' 2024-06-28T12:28:48,238 adding 'galaxy/tools/bundled/filters/gff/__init__.py' 2024-06-28T12:28:48,240 adding 'galaxy/tools/bundled/filters/gff/extract_GFF_Features.py' 2024-06-28T12:28:48,241 adding 'galaxy/tools/bundled/filters/gff/extract_GFF_Features.xml' 2024-06-28T12:28:48,243 adding 'galaxy/tools/bundled/filters/gff/gff_filter_by_attribute.py' 2024-06-28T12:28:48,244 adding 'galaxy/tools/bundled/filters/gff/gff_filter_by_attribute.xml' 2024-06-28T12:28:48,246 adding 'galaxy/tools/bundled/filters/gff/gff_filter_by_feature_count.py' 2024-06-28T12:28:48,247 adding 'galaxy/tools/bundled/filters/gff/gff_filter_by_feature_count.xml' 2024-06-28T12:28:48,248 adding 'galaxy/tools/bundled/filters/gff/gtf_filter_by_attribute_values_list.py' 2024-06-28T12:28:48,250 adding 'galaxy/tools/bundled/filters/gff/gtf_filter_by_attribute_values_list.xml' 2024-06-28T12:28:48,252 adding 'galaxy/tools/bundled/interactive/default_notebook.ipynb' 2024-06-28T12:28:48,253 adding 'galaxy/tools/bundled/interactive/interactivetool_askomics.xml' 2024-06-28T12:28:48,254 adding 'galaxy/tools/bundled/interactive/interactivetool_bam_iobio.xml' 2024-06-28T12:28:48,256 adding 'galaxy/tools/bundled/interactive/interactivetool_cellxgene_0.16.2.xml' 2024-06-28T12:28:48,257 adding 'galaxy/tools/bundled/interactive/interactivetool_cellxgene_1.1.1.xml' 2024-06-28T12:28:48,259 adding 'galaxy/tools/bundled/interactive/interactivetool_climate_notebook.xml' 2024-06-28T12:28:48,260 adding 'galaxy/tools/bundled/interactive/interactivetool_ethercalc.xml' 2024-06-28T12:28:48,261 adding 'galaxy/tools/bundled/interactive/interactivetool_geoexplorer.xml' 2024-06-28T12:28:48,263 adding 'galaxy/tools/bundled/interactive/interactivetool_guacamole_desktop.xml' 2024-06-28T12:28:48,264 adding 'galaxy/tools/bundled/interactive/interactivetool_hicbrowser.xml' 2024-06-28T12:28:48,266 adding 'galaxy/tools/bundled/interactive/interactivetool_higlass.xml' 2024-06-28T12:28:48,267 adding 'galaxy/tools/bundled/interactive/interactivetool_isee.xml' 2024-06-28T12:28:48,269 adding 'galaxy/tools/bundled/interactive/interactivetool_jupyter_notebook.xml' 2024-06-28T12:28:48,271 adding 'galaxy/tools/bundled/interactive/interactivetool_jupyter_notebook_1.0.0.xml' 2024-06-28T12:28:48,272 adding 'galaxy/tools/bundled/interactive/interactivetool_metashark.xml' 2024-06-28T12:28:48,274 adding 'galaxy/tools/bundled/interactive/interactivetool_mgnify_notebook.xml' 2024-06-28T12:28:48,276 adding 'galaxy/tools/bundled/interactive/interactivetool_ml_jupyter_notebook.xml' 2024-06-28T12:28:48,277 adding 'galaxy/tools/bundled/interactive/interactivetool_neo4j.xml' 2024-06-28T12:28:48,279 adding 'galaxy/tools/bundled/interactive/interactivetool_openrefine.xml' 2024-06-28T12:28:48,280 adding 'galaxy/tools/bundled/interactive/interactivetool_pangeo_notebook.xml' 2024-06-28T12:28:48,281 adding 'galaxy/tools/bundled/interactive/interactivetool_panoply.xml' 2024-06-28T12:28:48,283 adding 'galaxy/tools/bundled/interactive/interactivetool_paraview.xml' 2024-06-28T12:28:48,284 adding 'galaxy/tools/bundled/interactive/interactivetool_pavian.xml' 2024-06-28T12:28:48,285 adding 'galaxy/tools/bundled/interactive/interactivetool_phinch.xml' 2024-06-28T12:28:48,287 adding 'galaxy/tools/bundled/interactive/interactivetool_pyiron.xml' 2024-06-28T12:28:48,289 adding 'galaxy/tools/bundled/interactive/interactivetool_qiskit_jupyter_notebook.xml' 2024-06-28T12:28:48,290 adding 'galaxy/tools/bundled/interactive/interactivetool_radiant.xml' 2024-06-28T12:28:48,292 adding 'galaxy/tools/bundled/interactive/interactivetool_rstudio.xml' 2024-06-28T12:28:48,293 adding 'galaxy/tools/bundled/interactive/interactivetool_simtext_app.xml' 2024-06-28T12:28:48,294 adding 'galaxy/tools/bundled/interactive/interactivetool_vcf_iobio.xml' 2024-06-28T12:28:48,295 adding 'galaxy/tools/bundled/interactive/interactivetool_vrm_editor.xml' 2024-06-28T12:28:48,297 adding 'galaxy/tools/bundled/interactive/interactivetool_wallace.xml' 2024-06-28T12:28:48,298 adding 'galaxy/tools/bundled/interactive/interactivetool_wilson.xml' 2024-06-28T12:28:48,300 adding 'galaxy/tools/bundled/interactive/simtext_app.R' 2024-06-28T12:28:48,303 adding 'galaxy/tools/bundled/maf/__init__.py' 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'galaxy/tools/bundled/maf/maf_limit_size.xml' 2024-06-28T12:28:48,322 adding 'galaxy/tools/bundled/maf/maf_limit_to_species.py' 2024-06-28T12:28:48,323 adding 'galaxy/tools/bundled/maf/maf_limit_to_species.xml' 2024-06-28T12:28:48,324 adding 'galaxy/tools/bundled/maf/maf_reverse_complement.py' 2024-06-28T12:28:48,326 adding 'galaxy/tools/bundled/maf/maf_reverse_complement.xml' 2024-06-28T12:28:48,327 adding 'galaxy/tools/bundled/maf/maf_split_by_species.py' 2024-06-28T12:28:48,329 adding 'galaxy/tools/bundled/maf/maf_split_by_species.xml' 2024-06-28T12:28:48,330 adding 'galaxy/tools/bundled/maf/maf_stats.py' 2024-06-28T12:28:48,331 adding 'galaxy/tools/bundled/maf/maf_stats.xml' 2024-06-28T12:28:48,333 adding 'galaxy/tools/bundled/maf/maf_thread_for_species.py' 2024-06-28T12:28:48,334 adding 'galaxy/tools/bundled/maf/maf_thread_for_species.xml' 2024-06-28T12:28:48,336 adding 'galaxy/tools/bundled/maf/maf_to_bed.py' 2024-06-28T12:28:48,337 adding 'galaxy/tools/bundled/maf/maf_to_bed.xml' 2024-06-28T12:28:48,338 adding 'galaxy/tools/bundled/maf/maf_to_bed_code.py' 2024-06-28T12:28:48,340 adding 'galaxy/tools/bundled/maf/maf_to_fasta.xml' 2024-06-28T12:28:48,341 adding 'galaxy/tools/bundled/maf/maf_to_fasta_concat.py' 2024-06-28T12:28:48,343 adding 'galaxy/tools/bundled/maf/maf_to_fasta_multiple_sets.py' 2024-06-28T12:28:48,344 adding 'galaxy/tools/bundled/maf/maf_to_interval.py' 2024-06-28T12:28:48,346 adding 'galaxy/tools/bundled/maf/maf_to_interval.xml' 2024-06-28T12:28:48,347 adding 'galaxy/tools/bundled/maf/vcf_to_maf_customtrack.py' 2024-06-28T12:28:48,349 adding 'galaxy/tools/bundled/maf/vcf_to_maf_customtrack.xml' 2024-06-28T12:28:48,350 adding 'galaxy/tools/bundled/meme/__init__.py' 2024-06-28T12:28:48,352 adding 'galaxy/tools/bundled/meme/fimo.xml' 2024-06-28T12:28:48,354 adding 'galaxy/tools/bundled/meme/fimo_wrapper.py' 2024-06-28T12:28:48,356 adding 'galaxy/tools/bundled/meme/meme.xml' 2024-06-28T12:28:48,357 adding 'galaxy/tools/bundled/metag_tools/__init__.py' 2024-06-28T12:28:48,359 adding 'galaxy/tools/bundled/metag_tools/blat_wrapper.py' 2024-06-28T12:28:48,360 adding 'galaxy/tools/bundled/metag_tools/blat_wrapper.xml' 2024-06-28T12:28:48,361 adding 'galaxy/tools/bundled/metag_tools/shrimp_color_wrapper.py' 2024-06-28T12:28:48,363 adding 'galaxy/tools/bundled/metag_tools/shrimp_color_wrapper.xml' 2024-06-28T12:28:48,366 adding 'galaxy/tools/bundled/metag_tools/shrimp_wrapper.py' 2024-06-28T12:28:48,368 adding 'galaxy/tools/bundled/metag_tools/shrimp_wrapper.xml' 2024-06-28T12:28:48,370 adding 'galaxy/tools/bundled/next_gen_conversion/bwa_solid2fastq_modified.pl' 2024-06-28T12:28:48,371 adding 'galaxy/tools/bundled/next_gen_conversion/fastq_conversions.py' 2024-06-28T12:28:48,373 adding 'galaxy/tools/bundled/next_gen_conversion/fastq_conversions.xml' 2024-06-28T12:28:48,374 adding 'galaxy/tools/bundled/next_gen_conversion/fastq_gen_conv.py' 2024-06-28T12:28:48,375 adding 'galaxy/tools/bundled/next_gen_conversion/fastq_gen_conv.xml' 2024-06-28T12:28:48,377 adding 'galaxy/tools/bundled/next_gen_conversion/solid2fastq.py' 2024-06-28T12:28:48,379 adding 'galaxy/tools/bundled/next_gen_conversion/solid2fastq.xml' 2024-06-28T12:28:48,380 adding 'galaxy/tools/bundled/next_gen_conversion/solid_to_fastq.py' 2024-06-28T12:28:48,381 adding 'galaxy/tools/bundled/next_gen_conversion/solid_to_fastq.xml' 2024-06-28T12:28:48,383 adding 'galaxy/tools/bundled/ngs_simulation/__init__.py' 2024-06-28T12:28:48,385 adding 'galaxy/tools/bundled/ngs_simulation/ngs_simulation.py' 2024-06-28T12:28:48,387 adding 'galaxy/tools/bundled/ngs_simulation/ngs_simulation.xml' 2024-06-28T12:28:48,389 adding 'galaxy/tools/bundled/phenotype_association/BEAM2_wrapper.sh' 2024-06-28T12:28:48,390 adding 'galaxy/tools/bundled/phenotype_association/__init__.py' 2024-06-28T12:28:48,391 adding 'galaxy/tools/bundled/phenotype_association/beam.xml' 2024-06-28T12:28:48,393 adding 'galaxy/tools/bundled/phenotype_association/gpass.pl' 2024-06-28T12:28:48,394 adding 'galaxy/tools/bundled/phenotype_association/gpass.xml' 2024-06-28T12:28:48,396 adding 'galaxy/tools/bundled/phenotype_association/ldtools.xml' 2024-06-28T12:28:48,397 adding 'galaxy/tools/bundled/phenotype_association/ldtools_wrapper.sh' 2024-06-28T12:28:48,398 adding 'galaxy/tools/bundled/phenotype_association/linkToDavid.pl' 2024-06-28T12:28:48,399 adding 'galaxy/tools/bundled/phenotype_association/linkToDavid.xml' 2024-06-28T12:28:48,401 adding 'galaxy/tools/bundled/phenotype_association/linkToGProfile.pl' 2024-06-28T12:28:48,402 adding 'galaxy/tools/bundled/phenotype_association/linkToGProfile.xml' 2024-06-28T12:28:48,403 adding 'galaxy/tools/bundled/phenotype_association/lped_to_geno.pl' 2024-06-28T12:28:48,406 adding 'galaxy/tools/bundled/phenotype_association/lps.xml' 2024-06-28T12:28:48,407 adding 'galaxy/tools/bundled/phenotype_association/lps_tool_wrapper.sh' 2024-06-28T12:28:48,409 adding 'galaxy/tools/bundled/phenotype_association/master2gd_snp.pl' 2024-06-28T12:28:48,410 adding 'galaxy/tools/bundled/phenotype_association/master2gd_snp.xml' 2024-06-28T12:28:48,412 adding 'galaxy/tools/bundled/phenotype_association/master2pg.pl' 2024-06-28T12:28:48,413 adding 'galaxy/tools/bundled/phenotype_association/master2pg.xml' 2024-06-28T12:28:48,414 adding 'galaxy/tools/bundled/phenotype_association/mergeSnps.pl' 2024-06-28T12:28:48,416 adding 'galaxy/tools/bundled/phenotype_association/pagetag.py' 2024-06-28T12:28:48,418 adding 'galaxy/tools/bundled/phenotype_association/pass.xml' 2024-06-28T12:28:48,419 adding 'galaxy/tools/bundled/phenotype_association/pass_wrapper.sh' 2024-06-28T12:28:48,421 adding 'galaxy/tools/bundled/phenotype_association/senatag.py' 2024-06-28T12:28:48,422 adding 'galaxy/tools/bundled/phenotype_association/sift.xml' 2024-06-28T12:28:48,424 adding 'galaxy/tools/bundled/phenotype_association/sift_variants_wrapper.sh' 2024-06-28T12:28:48,426 adding 'galaxy/tools/bundled/plotting/bar_chart.py' 2024-06-28T12:28:48,427 adding 'galaxy/tools/bundled/plotting/bar_chart.xml' 2024-06-28T12:28:48,429 adding 'galaxy/tools/bundled/plotting/boxplot.xml' 2024-06-28T12:28:48,430 adding 'galaxy/tools/bundled/solid_tools/__init__.py' 2024-06-28T12:28:48,432 adding 'galaxy/tools/bundled/solid_tools/maq_cs_wrapper.py' 2024-06-28T12:28:48,433 adding 'galaxy/tools/bundled/solid_tools/maq_cs_wrapper.xml' 2024-06-28T12:28:48,434 adding 'galaxy/tools/bundled/solid_tools/maq_cs_wrapper_code.py' 2024-06-28T12:28:48,436 adding 'galaxy/tools/bundled/solid_tools/qualsolid_boxplot_graph.sh' 2024-06-28T12:28:48,437 adding 'galaxy/tools/bundled/solid_tools/solid_qual_boxplot.xml' 2024-06-28T12:28:48,438 adding 'galaxy/tools/bundled/solid_tools/solid_qual_stats.py' 2024-06-28T12:28:48,439 adding 'galaxy/tools/bundled/solid_tools/solid_qual_stats.xml' 2024-06-28T12:28:48,441 adding 'galaxy/tools/bundled/sr_assembly/__init__.py' 2024-06-28T12:28:48,443 adding 'galaxy/tools/bundled/sr_assembly/velvetg.xml' 2024-06-28T12:28:48,444 adding 'galaxy/tools/bundled/sr_assembly/velvetg_wrapper.py' 2024-06-28T12:28:48,446 adding 'galaxy/tools/bundled/sr_assembly/velveth.xml' 2024-06-28T12:28:48,447 adding 'galaxy/tools/bundled/sr_assembly/velveth_wrapper.py' 2024-06-28T12:28:48,450 adding 'galaxy/tools/bundled/sr_mapping/PerM.xml' 2024-06-28T12:28:48,451 adding 'galaxy/tools/bundled/sr_mapping/__init__.py' 2024-06-28T12:28:48,453 adding 'galaxy/tools/bundled/sr_mapping/bfast_wrapper.py' 2024-06-28T12:28:48,456 adding 'galaxy/tools/bundled/sr_mapping/bfast_wrapper.xml' 2024-06-28T12:28:48,458 adding 'galaxy/tools/bundled/sr_mapping/fastq_statistics.xml' 2024-06-28T12:28:48,459 adding 'galaxy/tools/bundled/sr_mapping/mosaik.xml' 2024-06-28T12:28:48,461 adding 'galaxy/tools/bundled/sr_mapping/srma_wrapper.py' 2024-06-28T12:28:48,463 adding 'galaxy/tools/bundled/sr_mapping/srma_wrapper.xml' 2024-06-28T12:28:48,465 adding 'galaxy/tools/bundled/stats/__init__.py' 2024-06-28T12:28:48,466 adding 'galaxy/tools/bundled/stats/aggregate_binned_scores_in_intervals.xml' 2024-06-28T12:28:48,468 adding 'galaxy/tools/bundled/stats/aggregate_scores_in_intervals.py' 2024-06-28T12:28:48,470 adding 'galaxy/tools/bundled/stats/filtering.py' 2024-06-28T12:28:48,471 adding 'galaxy/tools/bundled/stats/filtering.xml' 2024-06-28T12:28:48,472 adding 'galaxy/tools/bundled/stats/filtering_1_1_0.xml' 2024-06-28T12:28:48,474 adding 'galaxy/tools/bundled/stats/grouping.py' 2024-06-28T12:28:48,476 adding 'galaxy/tools/bundled/stats/grouping.xml' 2024-06-28T12:28:48,477 adding 'galaxy/tools/bundled/stats/gsummary.py' 2024-06-28T12:28:48,479 adding 'galaxy/tools/bundled/stats/gsummary.xml' 2024-06-28T12:28:48,480 adding 'galaxy/tools/bundled/stats/r_wrapper.sh' 2024-06-28T12:28:48,482 adding 'galaxy/tools/data/__init__.py' 2024-06-28T12:28:48,483 adding 'galaxy/tools/data_manager/__init__.py' 2024-06-28T12:28:48,485 adding 'galaxy/tools/data_manager/manager.py' 2024-06-28T12:28:48,487 adding 'galaxy/tools/error_reports/__init__.py' 2024-06-28T12:28:48,489 adding 'galaxy/tools/error_reports/plugins/__init__.py' 2024-06-28T12:28:48,490 adding 'galaxy/tools/error_reports/plugins/base_git.py' 2024-06-28T12:28:48,491 adding 'galaxy/tools/error_reports/plugins/email.py' 2024-06-28T12:28:48,493 adding 'galaxy/tools/error_reports/plugins/github.py' 2024-06-28T12:28:48,495 adding 'galaxy/tools/error_reports/plugins/gitlab.py' 2024-06-28T12:28:48,497 adding 'galaxy/tools/error_reports/plugins/influxdb.py' 2024-06-28T12:28:48,498 adding 'galaxy/tools/error_reports/plugins/json.py' 2024-06-28T12:28:48,499 adding 'galaxy/tools/error_reports/plugins/sentry.py' 2024-06-28T12:28:48,501 adding 'galaxy/tools/error_reports/plugins/slack.py' 2024-06-28T12:28:48,502 adding 'galaxy/tools/expressions/__init__.py' 2024-06-28T12:28:48,503 adding 'galaxy/tools/expressions/cwlNodeEngine.js' 2024-06-28T12:28:48,505 adding 'galaxy/tools/expressions/evaluation.py' 2024-06-28T12:28:48,506 adding 'galaxy/tools/expressions/script.py' 2024-06-28T12:28:48,507 adding 'galaxy/tools/expressions/util.py' 2024-06-28T12:28:48,508 adding 'galaxy/tools/filters/__init__.py' 2024-06-28T12:28:48,510 adding 'galaxy/tools/imp_exp/__init__.py' 2024-06-28T12:28:48,511 adding 'galaxy/tools/imp_exp/exp_history_to_archive.xml' 2024-06-28T12:28:48,512 adding 'galaxy/tools/imp_exp/exp_history_to_uri.xml' 2024-06-28T12:28:48,514 adding 'galaxy/tools/imp_exp/export_history.py' 2024-06-28T12:28:48,515 adding 'galaxy/tools/imp_exp/imp_history_from_archive.xml' 2024-06-28T12:28:48,516 adding 'galaxy/tools/imp_exp/unpack_tar_gz_archive.py' 2024-06-28T12:28:48,519 adding 'galaxy/tools/parameters/__init__.py' 2024-06-28T12:28:48,532 adding 'galaxy/tools/parameters/basic.py' 2024-06-28T12:28:48,534 adding 'galaxy/tools/parameters/cancelable_request.py' 2024-06-28T12:28:48,535 adding 'galaxy/tools/parameters/dataset_matcher.py' 2024-06-28T12:28:48,540 adding 'galaxy/tools/parameters/dynamic_options.py' 2024-06-28T12:28:48,544 adding 'galaxy/tools/parameters/grouping.py' 2024-06-28T12:28:48,545 adding 'galaxy/tools/parameters/history_query.py' 2024-06-28T12:28:48,547 adding 'galaxy/tools/parameters/input_translation.py' 2024-06-28T12:28:48,549 adding 'galaxy/tools/parameters/meta.py' 2024-06-28T12:28:48,550 adding 'galaxy/tools/parameters/sanitize.py' 2024-06-28T12:28:48,553 adding 'galaxy/tools/parameters/validation.py' 2024-06-28T12:28:48,554 adding 'galaxy/tools/parameters/workflow_utils.py' 2024-06-28T12:28:48,556 adding 'galaxy/tools/parameters/wrapped.py' 2024-06-28T12:28:48,557 adding 'galaxy/tools/parameters/wrapped_json.py' 2024-06-28T12:28:48,560 adding 'galaxy/tools/search/__init__.py' 2024-06-28T12:28:48,562 adding 'galaxy/tools/util/__init__.py' 2024-06-28T12:28:48,566 adding 'galaxy/tools/util/maf_utilities.py' 2024-06-28T12:28:48,568 adding 'galaxy/tools/util/galaxyops/__init__.py' 2024-06-28T12:28:48,569 adding 'galaxy/visualization/__init__.py' 2024-06-28T12:28:48,571 adding 'galaxy/visualization/genomes.py' 2024-06-28T12:28:48,573 adding 'galaxy/visualization/data_providers/__init__.py' 2024-06-28T12:28:48,575 adding 'galaxy/visualization/data_providers/basic.py' 2024-06-28T12:28:48,576 adding 'galaxy/visualization/data_providers/cigar.py' 2024-06-28T12:28:48,583 adding 'galaxy/visualization/data_providers/genome.py' 2024-06-28T12:28:48,585 adding 'galaxy/visualization/data_providers/registry.py' 2024-06-28T12:28:48,587 adding 'galaxy/visualization/data_providers/phyloviz/__init__.py' 2024-06-28T12:28:48,588 adding 'galaxy/visualization/data_providers/phyloviz/baseparser.py' 2024-06-28T12:28:48,590 adding 'galaxy/visualization/data_providers/phyloviz/newickparser.py' 2024-06-28T12:28:48,591 adding 'galaxy/visualization/data_providers/phyloviz/nexusparser.py' 2024-06-28T12:28:48,593 adding 'galaxy/visualization/data_providers/phyloviz/phyloxmlparser.py' 2024-06-28T12:28:48,594 adding 'galaxy/visualization/genome/__init__.py' 2024-06-28T12:28:48,596 adding 'galaxy/visualization/plugins/__init__.py' 2024-06-28T12:28:48,599 adding 'galaxy/visualization/plugins/config_parser.py' 2024-06-28T12:28:48,601 adding 'galaxy/visualization/plugins/plugin.py' 2024-06-28T12:28:48,603 adding 'galaxy/visualization/plugins/registry.py' 2024-06-28T12:28:48,605 adding 'galaxy/visualization/plugins/resource_parser.py' 2024-06-28T12:28:48,606 adding 'galaxy/visualization/plugins/utils.py' 2024-06-28T12:28:48,607 adding 'galaxy/visualization/tracks/__init__.py' 2024-06-28T12:28:48,609 adding 'galaxy/webhooks/__init__.py' 2024-06-28T12:28:48,611 adding 'galaxy/work/__init__.py' 2024-06-28T12:28:48,612 adding 'galaxy/work/context.py' 2024-06-28T12:28:48,614 adding 'galaxy/workflow/__init__.py' 2024-06-28T12:28:48,617 adding 'galaxy/workflow/extract.py' 2024-06-28T12:28:48,630 adding 'galaxy/workflow/modules.py' 2024-06-28T12:28:48,633 adding 'galaxy/workflow/render.py' 2024-06-28T12:28:48,636 adding 'galaxy/workflow/run.py' 2024-06-28T12:28:48,640 adding 'galaxy/workflow/run_request.py' 2024-06-28T12:28:48,643 adding 'galaxy/workflow/scheduling_manager.py' 2024-06-28T12:28:48,644 adding 'galaxy/workflow/steps.py' 2024-06-28T12:28:48,645 adding 'galaxy/workflow/trs_proxy.py' 2024-06-28T12:28:48,647 adding 'galaxy/workflow/refactor/__init__.py' 2024-06-28T12:28:48,650 adding 'galaxy/workflow/refactor/execute.py' 2024-06-28T12:28:48,652 adding 'galaxy/workflow/refactor/schema.py' 2024-06-28T12:28:48,654 adding 'galaxy/workflow/reports/__init__.py' 2024-06-28T12:28:48,655 adding 'galaxy/workflow/reports/generators/__init__.py' 2024-06-28T12:28:48,656 adding 'galaxy/workflow/reports/generators/markdown.py' 2024-06-28T12:28:48,658 adding 'galaxy/workflow/resources/__init__.py' 2024-06-28T12:28:48,660 adding 'galaxy/workflow/resources/example.py.sample' 2024-06-28T12:28:48,661 adding 'galaxy/workflow/schedulers/__init__.py' 2024-06-28T12:28:48,662 adding 'galaxy/workflow/schedulers/core.py' 2024-06-28T12:28:48,665 adding 'galaxy_ext/__init__.py' 2024-06-28T12:28:48,666 adding 'galaxy_ext/py.typed' 2024-06-28T12:28:48,667 adding 'galaxy_ext/container_monitor/__init__.py' 2024-06-28T12:28:48,668 adding 'galaxy_ext/container_monitor/monitor.py' 2024-06-28T12:28:48,670 adding 'galaxy_ext/expressions/__init__.py' 2024-06-28T12:28:48,671 adding 'galaxy_ext/expressions/handle_job.py' 2024-06-28T12:28:48,672 adding 'galaxy_ext/metadata/__init__.py' 2024-06-28T12:28:48,674 adding 'galaxy_ext/metadata/set_metadata.py' 2024-06-28T12:28:48,675 adding 'tool_shed_client/__init__.py' 2024-06-28T12:28:48,676 adding 'tool_shed_client/py.typed' 2024-06-28T12:28:48,677 adding 'tool_shed_client/trs_util.py' 2024-06-28T12:28:48,680 adding 'tool_shed_client/schema/__init__.py' 2024-06-28T12:28:48,681 adding 'tool_shed_client/schema/trs.py' 2024-06-28T12:28:48,683 adding 'tool_shed_client/schema/trs_service_info.py' 2024-06-28T12:28:48,685 adding 'galaxy_app-24.0.3.dist-info/LICENSE' 2024-06-28T12:28:48,691 adding 'galaxy_app-24.0.3.dist-info/METADATA' 2024-06-28T12:28:48,693 adding 'galaxy_app-24.0.3.dist-info/WHEEL' 2024-06-28T12:28:48,693 adding 'galaxy_app-24.0.3.dist-info/entry_points.txt' 2024-06-28T12:28:48,694 adding 'galaxy_app-24.0.3.dist-info/top_level.txt' 2024-06-28T12:28:48,704 adding 'galaxy_app-24.0.3.dist-info/RECORD' 2024-06-28T12:28:48,730 removing build/bdist.linux-armv7l/wheel 2024-06-28T12:28:48,978 Building wheel for galaxy-app (pyproject.toml): finished with status 'done' 2024-06-28T12:28:49,016 Created wheel for galaxy-app: filename=galaxy_app-24.0.3-py3-none-any.whl size=1461399 sha256=485bacde600c1e704bf96d444683f8d254f03dcad9d59cbecc6ef6434be032f9 2024-06-28T12:28:49,017 Stored in directory: /tmp/pip-ephem-wheel-cache-0myxg_1h/wheels/3d/97/2e/e3cc3df95aa6791ec49697f5a211902fdf8a4aa4eb3664ea2c 2024-06-28T12:28:49,058 Successfully built galaxy-app 2024-06-28T12:28:49,103 Removed build tracker: '/tmp/pip-build-tracker-u7p1rp2x'