2024-06-28T21:04:49,973 Created temporary directory: /tmp/pip-build-tracker-0kbnfyj0
2024-06-28T21:04:49,974 Initialized build tracking at /tmp/pip-build-tracker-0kbnfyj0
2024-06-28T21:04:49,975 Created build tracker: /tmp/pip-build-tracker-0kbnfyj0
2024-06-28T21:04:49,975 Entered build tracker: /tmp/pip-build-tracker-0kbnfyj0
2024-06-28T21:04:49,976 Created temporary directory: /tmp/pip-wheel-85hk54j9
2024-06-28T21:04:49,979 Created temporary directory: /tmp/pip-ephem-wheel-cache-2pniydqf
2024-06-28T21:04:50,001 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2024-06-28T21:04:50,004 2 location(s) to search for versions of ghoshtools:
2024-06-28T21:04:50,004 * https://pypi.org/simple/ghoshtools/
2024-06-28T21:04:50,004 * https://www.piwheels.org/simple/ghoshtools/
2024-06-28T21:04:50,005 Fetching project page and analyzing links: https://pypi.org/simple/ghoshtools/
2024-06-28T21:04:50,006 Getting page https://pypi.org/simple/ghoshtools/
2024-06-28T21:04:50,007 Found index url https://pypi.org/simple/
2024-06-28T21:04:50,220 Fetched page https://pypi.org/simple/ghoshtools/ as application/vnd.pypi.simple.v1+json
2024-06-28T21:04:50,221   Skipping link: No binaries permitted for ghoshtools: https://files.pythonhosted.org/packages/3e/15/94feada1bc8bbd2541ca0303cfcd6d64100cebb2ec84f4a93990494cffa4/ghoshtools-0.1.0-py2.py3-none-any.whl (from https://pypi.org/simple/ghoshtools/) (requires-python:>=3.6)
2024-06-28T21:04:50,222   Found link https://files.pythonhosted.org/packages/5a/03/7307d37b6216a4ac446c582d123977319a1b79c0ccccd6b6b43174d59b5d/ghoshtools-0.1.0.tar.gz (from https://pypi.org/simple/ghoshtools/) (requires-python:>=3.6), version: 0.1.0
2024-06-28T21:04:50,223 Fetching project page and analyzing links: https://www.piwheels.org/simple/ghoshtools/
2024-06-28T21:04:50,223 Getting page https://www.piwheels.org/simple/ghoshtools/
2024-06-28T21:04:50,225 Found index url https://www.piwheels.org/simple/
2024-06-28T21:04:50,384 Fetched page https://www.piwheels.org/simple/ghoshtools/ as text/html
2024-06-28T21:04:50,385 Skipping link: not a file: https://www.piwheels.org/simple/ghoshtools/
2024-06-28T21:04:50,386 Skipping link: not a file: https://pypi.org/simple/ghoshtools/
2024-06-28T21:04:50,406 Given no hashes to check 1 links for project 'ghoshtools': discarding no candidates
2024-06-28T21:04:50,425 Collecting ghoshtools==0.1.0
2024-06-28T21:04:50,427   Created temporary directory: /tmp/pip-unpack-gxkm32tp
2024-06-28T21:04:50,638   Downloading ghoshtools-0.1.0.tar.gz (22 kB)
2024-06-28T21:04:50,932   Added ghoshtools==0.1.0 from https://files.pythonhosted.org/packages/5a/03/7307d37b6216a4ac446c582d123977319a1b79c0ccccd6b6b43174d59b5d/ghoshtools-0.1.0.tar.gz to build tracker '/tmp/pip-build-tracker-0kbnfyj0'
2024-06-28T21:04:50,934   Running setup.py (path:/tmp/pip-wheel-85hk54j9/ghoshtools_328eed9965114795bc99af8c55c5268c/setup.py) egg_info for package ghoshtools
2024-06-28T21:04:50,935   Created temporary directory: /tmp/pip-pip-egg-info-a6b10yw0
2024-06-28T21:04:50,935   Preparing metadata (setup.py): started
2024-06-28T21:04:50,937   Running command python setup.py egg_info
2024-06-28T21:04:52,091   running egg_info
2024-06-28T21:04:52,092   creating /tmp/pip-pip-egg-info-a6b10yw0/ghoshtools.egg-info
2024-06-28T21:04:52,117   writing /tmp/pip-pip-egg-info-a6b10yw0/ghoshtools.egg-info/PKG-INFO
2024-06-28T21:04:52,120   writing dependency_links to /tmp/pip-pip-egg-info-a6b10yw0/ghoshtools.egg-info/dependency_links.txt
2024-06-28T21:04:52,122   writing requirements to /tmp/pip-pip-egg-info-a6b10yw0/ghoshtools.egg-info/requires.txt
2024-06-28T21:04:52,124   writing top-level names to /tmp/pip-pip-egg-info-a6b10yw0/ghoshtools.egg-info/top_level.txt
2024-06-28T21:04:52,125   writing manifest file '/tmp/pip-pip-egg-info-a6b10yw0/ghoshtools.egg-info/SOURCES.txt'
2024-06-28T21:04:52,205   reading manifest file '/tmp/pip-pip-egg-info-a6b10yw0/ghoshtools.egg-info/SOURCES.txt'
2024-06-28T21:04:52,207   reading manifest template 'MANIFEST.in'
2024-06-28T21:04:52,210   warning: no previously-included files matching '__pycache__' found under directory '*'
2024-06-28T21:04:52,211   warning: no previously-included files matching '*.py[co]' found under directory '*'
2024-06-28T21:04:52,224   warning: no files found matching '*.jpg' under directory 'docs'
2024-06-28T21:04:52,228   warning: no files found matching '*.png' under directory 'docs'
2024-06-28T21:04:52,232   warning: no files found matching '*.gif' under directory 'docs'
2024-06-28T21:04:52,232   adding license file 'LICENSE'
2024-06-28T21:04:52,233   adding license file 'AUTHORS.rst'
2024-06-28T21:04:52,234   writing manifest file '/tmp/pip-pip-egg-info-a6b10yw0/ghoshtools.egg-info/SOURCES.txt'
2024-06-28T21:04:52,354   Preparing metadata (setup.py): finished with status 'done'
2024-06-28T21:04:52,358   Source in /tmp/pip-wheel-85hk54j9/ghoshtools_328eed9965114795bc99af8c55c5268c has version 0.1.0, which satisfies requirement ghoshtools==0.1.0 from https://files.pythonhosted.org/packages/5a/03/7307d37b6216a4ac446c582d123977319a1b79c0ccccd6b6b43174d59b5d/ghoshtools-0.1.0.tar.gz
2024-06-28T21:04:52,359   Removed ghoshtools==0.1.0 from https://files.pythonhosted.org/packages/5a/03/7307d37b6216a4ac446c582d123977319a1b79c0ccccd6b6b43174d59b5d/ghoshtools-0.1.0.tar.gz from build tracker '/tmp/pip-build-tracker-0kbnfyj0'
2024-06-28T21:04:52,365 Created temporary directory: /tmp/pip-unpack-jpg3dyan
2024-06-28T21:04:52,366 Created temporary directory: /tmp/pip-unpack-e0m64xm2
2024-06-28T21:04:52,374 Building wheels for collected packages: ghoshtools
2024-06-28T21:04:52,377   Created temporary directory: /tmp/pip-wheel-7x0mm0ob
2024-06-28T21:04:52,378   Building wheel for ghoshtools (setup.py): started
2024-06-28T21:04:52,379   Destination directory: /tmp/pip-wheel-7x0mm0ob
2024-06-28T21:04:52,380   Running command python setup.py bdist_wheel
2024-06-28T21:04:53,510   running bdist_wheel
2024-06-28T21:04:53,609   running build
2024-06-28T21:04:53,610   running build_py
2024-06-28T21:04:53,637   creating build
2024-06-28T21:04:53,638   creating build/lib
2024-06-28T21:04:53,639   creating build/lib/ghoshtools
2024-06-28T21:04:53,640   copying ghoshtools/utils.py -> build/lib/ghoshtools
2024-06-28T21:04:53,642   copying ghoshtools/extract_method.py -> build/lib/ghoshtools
2024-06-28T21:04:53,644   copying ghoshtools/__init__.py -> build/lib/ghoshtools
2024-06-28T21:04:53,646   copying ghoshtools/ghoshtools.py -> build/lib/ghoshtools
2024-06-28T21:04:53,648   copying ghoshtools/globals.py -> build/lib/ghoshtools
2024-06-28T21:04:53,649   running egg_info
2024-06-28T21:04:53,709   writing ghoshtools.egg-info/PKG-INFO
2024-06-28T21:04:53,712   writing dependency_links to ghoshtools.egg-info/dependency_links.txt
2024-06-28T21:04:53,714   writing requirements to ghoshtools.egg-info/requires.txt
2024-06-28T21:04:53,715   writing top-level names to ghoshtools.egg-info/top_level.txt
2024-06-28T21:04:53,745   reading manifest file 'ghoshtools.egg-info/SOURCES.txt'
2024-06-28T21:04:53,747   reading manifest template 'MANIFEST.in'
2024-06-28T21:04:53,750   warning: no previously-included files matching '__pycache__' found under directory '*'
2024-06-28T21:04:53,751   warning: no previously-included files matching '*.py[co]' found under directory '*'
2024-06-28T21:04:53,765   warning: no files found matching '*.jpg' under directory 'docs'
2024-06-28T21:04:53,769   warning: no files found matching '*.png' under directory 'docs'
2024-06-28T21:04:53,773   warning: no files found matching '*.gif' under directory 'docs'
2024-06-28T21:04:53,774   adding license file 'LICENSE'
2024-06-28T21:04:53,774   adding license file 'AUTHORS.rst'
2024-06-28T21:04:53,776   writing manifest file 'ghoshtools.egg-info/SOURCES.txt'
2024-06-28T21:04:53,779   /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'ghoshtools.resources' is absent from the `packages` configuration.
2024-06-28T21:04:53,780   !!

2024-06-28T21:04:53,781           ********************************************************************************
2024-06-28T21:04:53,782           ############################
2024-06-28T21:04:53,782           # Package would be ignored #
2024-06-28T21:04:53,783           ############################
2024-06-28T21:04:53,784           Python recognizes 'ghoshtools.resources' as an importable package[^1],
2024-06-28T21:04:53,784           but it is absent from setuptools' `packages` configuration.

2024-06-28T21:04:53,785           This leads to an ambiguous overall configuration. If you want to distribute this
2024-06-28T21:04:53,785           package, please make sure that 'ghoshtools.resources' is explicitly added
2024-06-28T21:04:53,786           to the `packages` configuration field.

2024-06-28T21:04:53,787           Alternatively, you can also rely on setuptools' discovery methods
2024-06-28T21:04:53,787           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-06-28T21:04:53,787           instead of `find_packages(...)`/`find:`).

2024-06-28T21:04:53,788           You can read more about "package discovery" on setuptools documentation page:

2024-06-28T21:04:53,794           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-06-28T21:04:53,795           If you don't want 'ghoshtools.resources' to be distributed and are
2024-06-28T21:04:53,795           already explicitly excluding 'ghoshtools.resources' via
2024-06-28T21:04:53,796           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-06-28T21:04:53,796           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-06-28T21:04:53,797           combination with a more fine grained `package-data` configuration.

2024-06-28T21:04:53,798           You can read more about "package data files" on setuptools documentation page:

2024-06-28T21:04:53,799           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-06-28T21:04:53,800           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-06-28T21:04:53,801                 even if it does not contain any `.py` files.
2024-06-28T21:04:53,802                 On the other hand, currently there is no concept of package data
2024-06-28T21:04:53,802                 directory, all directories are treated like packages.
2024-06-28T21:04:53,803           ********************************************************************************

2024-06-28T21:04:53,804   !!
2024-06-28T21:04:53,805     check.warn(importable)
2024-06-28T21:04:53,805   creating build/lib/ghoshtools/resources
2024-06-28T21:04:53,806   copying ghoshtools/resources/nextflow.config -> build/lib/ghoshtools/resources
2024-06-28T21:04:53,807   copying ghoshtools/resources/nextflow_helper_script.py -> build/lib/ghoshtools/resources
2024-06-28T21:04:53,807   copying ghoshtools/resources/poop.yml -> build/lib/ghoshtools/resources
2024-06-28T21:04:53,808   copying ghoshtools/resources/run_python_function.nf -> build/lib/ghoshtools/resources
2024-06-28T21:04:53,808   copying ghoshtools/resources/run_python_function_batched.nf -> build/lib/ghoshtools/resources
2024-06-28T21:04:53,831   /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated.
2024-06-28T21:04:53,831   !!

2024-06-28T21:04:53,833           ********************************************************************************
2024-06-28T21:04:53,833           Please avoid running ``setup.py`` directly.
2024-06-28T21:04:53,834           Instead, use pypa/build, pypa/installer or other
2024-06-28T21:04:53,834           standards-based tools.

2024-06-28T21:04:53,835           See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details.
2024-06-28T21:04:53,836           ********************************************************************************

2024-06-28T21:04:53,837   !!
2024-06-28T21:04:53,838     self.initialize_options()
2024-06-28T21:04:53,859   installing to build/bdist.linux-armv7l/wheel
2024-06-28T21:04:53,859   running install
2024-06-28T21:04:53,883   running install_lib
2024-06-28T21:04:53,908   creating build/bdist.linux-armv7l
2024-06-28T21:04:53,909   creating build/bdist.linux-armv7l/wheel
2024-06-28T21:04:53,911   creating build/bdist.linux-armv7l/wheel/ghoshtools
2024-06-28T21:04:53,912   copying build/lib/ghoshtools/utils.py -> build/bdist.linux-armv7l/wheel/ghoshtools
2024-06-28T21:04:53,914   copying build/lib/ghoshtools/extract_method.py -> build/bdist.linux-armv7l/wheel/ghoshtools
2024-06-28T21:04:53,915   copying build/lib/ghoshtools/__init__.py -> build/bdist.linux-armv7l/wheel/ghoshtools
2024-06-28T21:04:53,917   copying build/lib/ghoshtools/ghoshtools.py -> build/bdist.linux-armv7l/wheel/ghoshtools
2024-06-28T21:04:53,919   copying build/lib/ghoshtools/globals.py -> build/bdist.linux-armv7l/wheel/ghoshtools
2024-06-28T21:04:53,922   creating build/bdist.linux-armv7l/wheel/ghoshtools/resources
2024-06-28T21:04:53,922   copying build/lib/ghoshtools/resources/poop.yml -> build/bdist.linux-armv7l/wheel/ghoshtools/resources
2024-06-28T21:04:53,925   copying build/lib/ghoshtools/resources/run_python_function_batched.nf -> build/bdist.linux-armv7l/wheel/ghoshtools/resources
2024-06-28T21:04:53,927   copying build/lib/ghoshtools/resources/nextflow.config -> build/bdist.linux-armv7l/wheel/ghoshtools/resources
2024-06-28T21:04:53,929   copying build/lib/ghoshtools/resources/run_python_function.nf -> build/bdist.linux-armv7l/wheel/ghoshtools/resources
2024-06-28T21:04:53,930   copying build/lib/ghoshtools/resources/nextflow_helper_script.py -> build/bdist.linux-armv7l/wheel/ghoshtools/resources
2024-06-28T21:04:53,932   running install_egg_info
2024-06-28T21:04:53,962   Copying ghoshtools.egg-info to build/bdist.linux-armv7l/wheel/ghoshtools-0.1.0-py3.11.egg-info
2024-06-28T21:04:53,973   running install_scripts
2024-06-28T21:04:53,988   creating build/bdist.linux-armv7l/wheel/ghoshtools-0.1.0.dist-info/WHEEL
2024-06-28T21:04:53,990   creating '/tmp/pip-wheel-7x0mm0ob/ghoshtools-0.1.0-py2.py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2024-06-28T21:04:53,993   adding 'ghoshtools/__init__.py'
2024-06-28T21:04:53,994   adding 'ghoshtools/extract_method.py'
2024-06-28T21:04:53,996   adding 'ghoshtools/ghoshtools.py'
2024-06-28T21:04:53,998   adding 'ghoshtools/globals.py'
2024-06-28T21:04:53,999   adding 'ghoshtools/utils.py'
2024-06-28T21:04:54,001   adding 'ghoshtools/resources/nextflow.config'
2024-06-28T21:04:54,002   adding 'ghoshtools/resources/nextflow_helper_script.py'
2024-06-28T21:04:54,005   adding 'ghoshtools/resources/poop.yml'
2024-06-28T21:04:54,006   adding 'ghoshtools/resources/run_python_function.nf'
2024-06-28T21:04:54,007   adding 'ghoshtools/resources/run_python_function_batched.nf'
2024-06-28T21:04:54,009   adding 'ghoshtools-0.1.0.dist-info/AUTHORS.rst'
2024-06-28T21:04:54,010   adding 'ghoshtools-0.1.0.dist-info/LICENSE'
2024-06-28T21:04:54,011   adding 'ghoshtools-0.1.0.dist-info/METADATA'
2024-06-28T21:04:54,012   adding 'ghoshtools-0.1.0.dist-info/WHEEL'
2024-06-28T21:04:54,013   adding 'ghoshtools-0.1.0.dist-info/top_level.txt'
2024-06-28T21:04:54,014   adding 'ghoshtools-0.1.0.dist-info/RECORD'
2024-06-28T21:04:54,015   removing build/bdist.linux-armv7l/wheel
2024-06-28T21:04:54,143   Building wheel for ghoshtools (setup.py): finished with status 'done'
2024-06-28T21:04:54,146   Created wheel for ghoshtools: filename=ghoshtools-0.1.0-py2.py3-none-any.whl size=18620 sha256=0fdb464b66e8a6b5a3ceee50c0ed6f4b98c566d7360bc1141a4da5b65c56e228
2024-06-28T21:04:54,147   Stored in directory: /tmp/pip-ephem-wheel-cache-2pniydqf/wheels/e2/f3/10/bc621fcc3981221c36a072725ff47e649ec85a13410d358bce
2024-06-28T21:04:54,157 Successfully built ghoshtools
2024-06-28T21:04:54,160 Removed build tracker: '/tmp/pip-build-tracker-0kbnfyj0'