2024-07-02T12:20:00,451 Created temporary directory: /tmp/pip-build-tracker-7g4myr6k
2024-07-02T12:20:00,452 Initialized build tracking at /tmp/pip-build-tracker-7g4myr6k
2024-07-02T12:20:00,452 Created build tracker: /tmp/pip-build-tracker-7g4myr6k
2024-07-02T12:20:00,453 Entered build tracker: /tmp/pip-build-tracker-7g4myr6k
2024-07-02T12:20:00,454 Created temporary directory: /tmp/pip-wheel-qp3zfzj7
2024-07-02T12:20:00,457 Created temporary directory: /tmp/pip-ephem-wheel-cache-wxuo8k97
2024-07-02T12:20:00,479 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2024-07-02T12:20:00,482 2 location(s) to search for versions of crispector2:
2024-07-02T12:20:00,482 * https://pypi.org/simple/crispector2/
2024-07-02T12:20:00,482 * https://www.piwheels.org/simple/crispector2/
2024-07-02T12:20:00,483 Fetching project page and analyzing links: https://pypi.org/simple/crispector2/
2024-07-02T12:20:00,484 Getting page https://pypi.org/simple/crispector2/
2024-07-02T12:20:00,486 Found index url https://pypi.org/simple/
2024-07-02T12:20:00,698 Fetched page https://pypi.org/simple/crispector2/ as application/vnd.pypi.simple.v1+json
2024-07-02T12:20:00,701   Skipping link: No binaries permitted for crispector2: https://files.pythonhosted.org/packages/bb/5a/50eaff3c829e6d5acc61fee35051c0b9f837b947f831b80eebd47f50ceda/crispector2-2.0.7-py2.py3-none-any.whl (from https://pypi.org/simple/crispector2/) (requires-python:>=3.7)
2024-07-02T12:20:00,702   Found link https://files.pythonhosted.org/packages/db/06/4973e211590ec29330f4209fe4db7e2ebe9261d3df3cb9672741338e61db/crispector2-2.0.7.tar.gz (from https://pypi.org/simple/crispector2/) (requires-python:>=3.7), version: 2.0.7
2024-07-02T12:20:00,702   Skipping link: No binaries permitted for crispector2: https://files.pythonhosted.org/packages/46/d1/0f612c417fb2d66d948300a517d1686d085e6a4a18db3948a230b3d55e7e/crispector2-2.0.8-py2.py3-none-any.whl (from https://pypi.org/simple/crispector2/) (requires-python:>=3.7)
2024-07-02T12:20:00,703   Found link https://files.pythonhosted.org/packages/6d/79/3a27ec43b377e9665b18c78951f8902c640e4046bdbe8e255f06b0e9da7b/crispector2-2.0.8.tar.gz (from https://pypi.org/simple/crispector2/) (requires-python:>=3.7), version: 2.0.8
2024-07-02T12:20:00,704   Skipping link: No binaries permitted for crispector2: https://files.pythonhosted.org/packages/d6/63/e57b6b7e2feb9abafbb3362686242f1e13f1329ab2470c312b34b854a32c/crispector2-2.0.9-py3-none-any.whl (from https://pypi.org/simple/crispector2/)
2024-07-02T12:20:00,705   Found link https://files.pythonhosted.org/packages/1c/bb/c566e70eabd0d85862b55ed7aacd4f27a921b5a07032942487544ab89f08/crispector2-2.0.9.tar.gz (from https://pypi.org/simple/crispector2/), version: 2.0.9
2024-07-02T12:20:00,705   Skipping link: No binaries permitted for crispector2: https://files.pythonhosted.org/packages/86/f0/d2ef53cfc071f00e4fbbe8a60037496432a782c675ec0f56f86202690597/crispector2-2.1.1-py3-none-any.whl (from https://pypi.org/simple/crispector2/)
2024-07-02T12:20:00,706   Found link https://files.pythonhosted.org/packages/79/7b/4e41052ae11ab3a8761fce7bddfd9c697b80f88a31e5efe36e8bfe4a1e8b/crispector2-2.1.1.tar.gz (from https://pypi.org/simple/crispector2/), version: 2.1.1
2024-07-02T12:20:00,707 Fetching project page and analyzing links: https://www.piwheels.org/simple/crispector2/
2024-07-02T12:20:00,708 Getting page https://www.piwheels.org/simple/crispector2/
2024-07-02T12:20:00,709 Found index url https://www.piwheels.org/simple/
2024-07-02T12:20:00,877 Fetched page https://www.piwheels.org/simple/crispector2/ as text/html
2024-07-02T12:20:00,879   Skipping link: No binaries permitted for crispector2: https://www.piwheels.org/simple/crispector2/crispector2-2.0.9-py3-none-any.whl#sha256=11f36e2f879276d9b369df6d68f5385bb562192656acf10bc4909e51c9a0620e (from https://www.piwheels.org/simple/crispector2/)
2024-07-02T12:20:00,879   Skipping link: No binaries permitted for crispector2: https://www.piwheels.org/simple/crispector2/crispector2-2.0.8-py2.py3-none-any.whl#sha256=f222d0d4bb178770571ae530e472b4e231beaad1d23086a159edd7dfa54074eb (from https://www.piwheels.org/simple/crispector2/) (requires-python:>=3.7)
2024-07-02T12:20:00,880   Skipping link: No binaries permitted for crispector2: https://www.piwheels.org/simple/crispector2/crispector2-2.0.7-py2.py3-none-any.whl#sha256=6ff640c1b6141b08057f68d1f3c5f51ee814fdd573a7af2c20b2d37d71321f9f (from https://www.piwheels.org/simple/crispector2/) (requires-python:>=3.7)
2024-07-02T12:20:00,881 Skipping link: not a file: https://www.piwheels.org/simple/crispector2/
2024-07-02T12:20:00,881 Skipping link: not a file: https://pypi.org/simple/crispector2/
2024-07-02T12:20:00,901 Given no hashes to check 1 links for project 'crispector2': discarding no candidates
2024-07-02T12:20:00,921 Collecting crispector2==2.1.1
2024-07-02T12:20:00,923   Created temporary directory: /tmp/pip-unpack-e35mydy1
2024-07-02T12:20:01,139   Downloading crispector2-2.1.1.tar.gz (429 kB)
2024-07-02T12:20:01,363   Added crispector2==2.1.1 from https://files.pythonhosted.org/packages/79/7b/4e41052ae11ab3a8761fce7bddfd9c697b80f88a31e5efe36e8bfe4a1e8b/crispector2-2.1.1.tar.gz to build tracker '/tmp/pip-build-tracker-7g4myr6k'
2024-07-02T12:20:01,367   Created temporary directory: /tmp/pip-build-env-1o0nm818
2024-07-02T12:20:01,372   Installing build dependencies: started
2024-07-02T12:20:01,373   Running command pip subprocess to install build dependencies
2024-07-02T12:20:02,520   Using pip 24.0 from /usr/local/lib/python3.11/dist-packages/pip (python 3.11)
2024-07-02T12:20:03,035   Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2024-07-02T12:20:04,484   Collecting setuptools
2024-07-02T12:20:04,500     Using cached https://www.piwheels.org/simple/setuptools/setuptools-70.2.0-py3-none-any.whl (930 kB)
2024-07-02T12:20:07,156   Installing collected packages: setuptools
2024-07-02T12:20:09,705   Successfully installed setuptools-70.2.0

2024-07-02T12:20:10,016   [notice] A new release of pip is available: 24.0 -> 24.1.1
2024-07-02T12:20:10,017   [notice] To update, run: python3 -m pip install --upgrade pip
2024-07-02T12:20:10,282   Installing build dependencies: finished with status 'done'
2024-07-02T12:20:10,286   Getting requirements to build wheel: started
2024-07-02T12:20:10,287   Running command Getting requirements to build wheel
2024-07-02T12:20:10,866   /tmp/pip-build-env-1o0nm818/overlay/local/lib/python3.11/dist-packages/setuptools/config/expand.py:129: SetuptoolsWarning: File '/tmp/pip-wheel-qp3zfzj7/crispector2_fee0d7c98aed4783bc26715bac4cef0f/LICENSE.txt' cannot be found
2024-07-02T12:20:10,866     return '\n'.join(
2024-07-02T12:20:11,115   running egg_info
2024-07-02T12:20:11,118   writing crispector2.egg-info/PKG-INFO
2024-07-02T12:20:11,122   writing dependency_links to crispector2.egg-info/dependency_links.txt
2024-07-02T12:20:11,124   writing entry points to crispector2.egg-info/entry_points.txt
2024-07-02T12:20:11,126   writing requirements to crispector2.egg-info/requires.txt
2024-07-02T12:20:11,127   writing top-level names to crispector2.egg-info/top_level.txt
2024-07-02T12:20:11,149   reading manifest file 'crispector2.egg-info/SOURCES.txt'
2024-07-02T12:20:11,152   reading manifest template 'MANIFEST.in'
2024-07-02T12:20:11,154   adding license file 'LICENSE'
2024-07-02T12:20:11,158   writing manifest file 'crispector2.egg-info/SOURCES.txt'
2024-07-02T12:20:11,277   Getting requirements to build wheel: finished with status 'done'
2024-07-02T12:20:11,280   Created temporary directory: /tmp/pip-modern-metadata-u_17e78k
2024-07-02T12:20:11,282   Preparing metadata (pyproject.toml): started
2024-07-02T12:20:11,283   Running command Preparing metadata (pyproject.toml)
2024-07-02T12:20:11,861   /tmp/pip-build-env-1o0nm818/overlay/local/lib/python3.11/dist-packages/setuptools/config/expand.py:129: SetuptoolsWarning: File '/tmp/pip-wheel-qp3zfzj7/crispector2_fee0d7c98aed4783bc26715bac4cef0f/LICENSE.txt' cannot be found
2024-07-02T12:20:11,862     return '\n'.join(
2024-07-02T12:20:12,087   running dist_info
2024-07-02T12:20:12,092   creating /tmp/pip-modern-metadata-u_17e78k/crispector2.egg-info
2024-07-02T12:20:12,095   writing /tmp/pip-modern-metadata-u_17e78k/crispector2.egg-info/PKG-INFO
2024-07-02T12:20:12,099   writing dependency_links to /tmp/pip-modern-metadata-u_17e78k/crispector2.egg-info/dependency_links.txt
2024-07-02T12:20:12,101   writing entry points to /tmp/pip-modern-metadata-u_17e78k/crispector2.egg-info/entry_points.txt
2024-07-02T12:20:12,103   writing requirements to /tmp/pip-modern-metadata-u_17e78k/crispector2.egg-info/requires.txt
2024-07-02T12:20:12,104   writing top-level names to /tmp/pip-modern-metadata-u_17e78k/crispector2.egg-info/top_level.txt
2024-07-02T12:20:12,105   writing manifest file '/tmp/pip-modern-metadata-u_17e78k/crispector2.egg-info/SOURCES.txt'
2024-07-02T12:20:12,123   reading manifest file '/tmp/pip-modern-metadata-u_17e78k/crispector2.egg-info/SOURCES.txt'
2024-07-02T12:20:12,125   reading manifest template 'MANIFEST.in'
2024-07-02T12:20:12,126   adding license file 'LICENSE'
2024-07-02T12:20:12,129   writing manifest file '/tmp/pip-modern-metadata-u_17e78k/crispector2.egg-info/SOURCES.txt'
2024-07-02T12:20:12,130   creating '/tmp/pip-modern-metadata-u_17e78k/crispector2-2.1.1.dist-info'
2024-07-02T12:20:12,280   Preparing metadata (pyproject.toml): finished with status 'done'
2024-07-02T12:20:12,286   Source in /tmp/pip-wheel-qp3zfzj7/crispector2_fee0d7c98aed4783bc26715bac4cef0f has version 2.1.1, which satisfies requirement crispector2==2.1.1 from https://files.pythonhosted.org/packages/79/7b/4e41052ae11ab3a8761fce7bddfd9c697b80f88a31e5efe36e8bfe4a1e8b/crispector2-2.1.1.tar.gz
2024-07-02T12:20:12,287   Removed crispector2==2.1.1 from https://files.pythonhosted.org/packages/79/7b/4e41052ae11ab3a8761fce7bddfd9c697b80f88a31e5efe36e8bfe4a1e8b/crispector2-2.1.1.tar.gz from build tracker '/tmp/pip-build-tracker-7g4myr6k'
2024-07-02T12:20:12,293 Created temporary directory: /tmp/pip-unpack-qhx8edkv
2024-07-02T12:20:12,293 Created temporary directory: /tmp/pip-unpack-4c7crccv
2024-07-02T12:20:12,313 Building wheels for collected packages: crispector2
2024-07-02T12:20:12,318   Created temporary directory: /tmp/pip-wheel-n7p9j6d7
2024-07-02T12:20:12,318   Destination directory: /tmp/pip-wheel-n7p9j6d7
2024-07-02T12:20:12,320   Building wheel for crispector2 (pyproject.toml): started
2024-07-02T12:20:12,321   Running command Building wheel for crispector2 (pyproject.toml)
2024-07-02T12:20:12,848   /tmp/pip-build-env-1o0nm818/overlay/local/lib/python3.11/dist-packages/setuptools/config/expand.py:129: SetuptoolsWarning: File '/tmp/pip-wheel-qp3zfzj7/crispector2_fee0d7c98aed4783bc26715bac4cef0f/LICENSE.txt' cannot be found
2024-07-02T12:20:12,849     return '\n'.join(
2024-07-02T12:20:13,068   running bdist_wheel
2024-07-02T12:20:13,082   running build
2024-07-02T12:20:13,083   running build_py
2024-07-02T12:20:13,087   creating build
2024-07-02T12:20:13,087   creating build/lib
2024-07-02T12:20:13,088   creating build/lib/crispector2
2024-07-02T12:20:13,089   copying crispector2/crispector_main.py -> build/lib/crispector2
2024-07-02T12:20:13,092   copying crispector2/cli.py -> build/lib/crispector2
2024-07-02T12:20:13,094   copying crispector2/__init__.py -> build/lib/crispector2
2024-07-02T12:20:13,096   creating build/lib/crispector2/report
2024-07-02T12:20:13,097   copying crispector2/report/visualization_and_output.py -> build/lib/crispector2/report
2024-07-02T12:20:13,100   copying crispector2/report/__init__.py -> build/lib/crispector2/report
2024-07-02T12:20:13,102   copying crispector2/report/html_report.py -> build/lib/crispector2/report
2024-07-02T12:20:13,104   creating build/lib/crispector2/utils
2024-07-02T12:20:13,105   copying crispector2/utils/exceptions.py -> build/lib/crispector2/utils
2024-07-02T12:20:13,107   copying crispector2/utils/constants_and_types.py -> build/lib/crispector2/utils
2024-07-02T12:20:13,109   copying crispector2/utils/constants_and_types_old.py -> build/lib/crispector2/utils
2024-07-02T12:20:13,111   copying crispector2/utils/logger.py -> build/lib/crispector2/utils
2024-07-02T12:20:13,113   copying crispector2/utils/__init__.py -> build/lib/crispector2/utils
2024-07-02T12:20:13,114   copying crispector2/utils/configurator.py -> build/lib/crispector2/utils
2024-07-02T12:20:13,117   creating build/lib/crispector2/config
2024-07-02T12:20:13,118   copying crispector2/config/__init__.py -> build/lib/crispector2/config
2024-07-02T12:20:13,120   creating build/lib/crispector2/allele
2024-07-02T12:20:13,120   copying crispector2/allele/allele_tx.py -> build/lib/crispector2/allele
2024-07-02T12:20:13,123   copying crispector2/allele/allele_mock.py -> build/lib/crispector2/allele
2024-07-02T12:20:13,126   copying crispector2/allele/inconsistent_allele_freq.py -> build/lib/crispector2/allele
2024-07-02T12:20:13,127   copying crispector2/allele/random_reads_handler.py -> build/lib/crispector2/allele
2024-07-02T12:20:13,130   copying crispector2/allele/__init__.py -> build/lib/crispector2/allele
2024-07-02T12:20:13,131   copying crispector2/allele/allele_reference_df.py -> build/lib/crispector2/allele
2024-07-02T12:20:13,133   creating build/lib/crispector2/modifications
2024-07-02T12:20:13,134   copying crispector2/modifications/modification_tables.py -> build/lib/crispector2/modifications
2024-07-02T12:20:13,136   copying crispector2/modifications/__init__.py -> build/lib/crispector2/modifications
2024-07-02T12:20:13,137   copying crispector2/modifications/modification_types.py -> build/lib/crispector2/modifications
2024-07-02T12:20:13,140   creating build/lib/crispector2/input_processing
2024-07-02T12:20:13,140   copying crispector2/input_processing/input_processing.py -> build/lib/crispector2/input_processing
2024-07-02T12:20:13,143   copying crispector2/input_processing/alignment.py -> build/lib/crispector2/input_processing
2024-07-02T12:20:13,146   copying crispector2/input_processing/utils.py -> build/lib/crispector2/input_processing
2024-07-02T12:20:13,148   copying crispector2/input_processing/__init__.py -> build/lib/crispector2/input_processing
2024-07-02T12:20:13,150   creating build/lib/crispector2/algorithm
2024-07-02T12:20:13,151   copying crispector2/algorithm/translocations_original.py -> build/lib/crispector2/algorithm
2024-07-02T12:20:13,153   copying crispector2/algorithm/binomial_probability.py -> build/lib/crispector2/algorithm
2024-07-02T12:20:13,155   copying crispector2/algorithm/core_algorithm.py -> build/lib/crispector2/algorithm
2024-07-02T12:20:13,157   copying crispector2/algorithm/translocations.py -> build/lib/crispector2/algorithm
2024-07-02T12:20:13,159   copying crispector2/algorithm/__init__.py -> build/lib/crispector2/algorithm
2024-07-02T12:20:13,160   running egg_info
2024-07-02T12:20:13,163   writing crispector2.egg-info/PKG-INFO
2024-07-02T12:20:13,167   writing dependency_links to crispector2.egg-info/dependency_links.txt
2024-07-02T12:20:13,168   writing entry points to crispector2.egg-info/entry_points.txt
2024-07-02T12:20:13,170   writing requirements to crispector2.egg-info/requires.txt
2024-07-02T12:20:13,171   writing top-level names to crispector2.egg-info/top_level.txt
2024-07-02T12:20:13,184   reading manifest file 'crispector2.egg-info/SOURCES.txt'
2024-07-02T12:20:13,186   reading manifest template 'MANIFEST.in'
2024-07-02T12:20:13,188   adding license file 'LICENSE'
2024-07-02T12:20:13,192   writing manifest file 'crispector2.egg-info/SOURCES.txt'
2024-07-02T12:20:13,197   copying crispector2/config/default_config.yml -> build/lib/crispector2/config
2024-07-02T12:20:13,200   creating build/lib/crispector2/report/html_templates
2024-07-02T12:20:13,201   copying crispector2/report/html_templates/.DS_Store -> build/lib/crispector2/report/html_templates
2024-07-02T12:20:13,203   copying crispector2/report/html_templates/crispector_logo.jpg -> build/lib/crispector2/report/html_templates
2024-07-02T12:20:13,209   copying crispector2/report/html_templates/crispector_logo.png -> build/lib/crispector2/report/html_templates
2024-07-02T12:20:13,214   copying crispector2/report/html_templates/file_to_render.html -> build/lib/crispector2/report/html_templates
2024-07-02T12:20:13,217   copying crispector2/report/html_templates/file_to_render_old.html -> build/lib/crispector2/report/html_templates
2024-07-02T12:20:13,219   copying crispector2/report/html_templates/final_layout.html -> build/lib/crispector2/report/html_templates
2024-07-02T12:20:13,222   copying crispector2/report/html_templates/final_layout_old.html -> build/lib/crispector2/report/html_templates
2024-07-02T12:20:13,225   copying crispector2/report/html_templates/site_file_to_render.html -> build/lib/crispector2/report/html_templates
2024-07-02T12:20:13,227   copying crispector2/report/html_templates/site_layout.html -> build/lib/crispector2/report/html_templates
2024-07-02T12:20:13,238   installing to build/bdist.linux-armv7l/wheel
2024-07-02T12:20:13,238   running install
2024-07-02T12:20:13,263   running install_lib
2024-07-02T12:20:13,267   creating build/bdist.linux-armv7l
2024-07-02T12:20:13,267   creating build/bdist.linux-armv7l/wheel
2024-07-02T12:20:13,269   creating build/bdist.linux-armv7l/wheel/crispector2
2024-07-02T12:20:13,270   creating build/bdist.linux-armv7l/wheel/crispector2/report
2024-07-02T12:20:13,271   copying build/lib/crispector2/report/visualization_and_output.py -> build/bdist.linux-armv7l/wheel/crispector2/report
2024-07-02T12:20:13,275   copying build/lib/crispector2/report/__init__.py -> build/bdist.linux-armv7l/wheel/crispector2/report
2024-07-02T12:20:13,276   creating build/bdist.linux-armv7l/wheel/crispector2/report/html_templates
2024-07-02T12:20:13,277   copying build/lib/crispector2/report/html_templates/file_to_render.html -> build/bdist.linux-armv7l/wheel/crispector2/report/html_templates
2024-07-02T12:20:13,280   copying build/lib/crispector2/report/html_templates/.DS_Store -> build/bdist.linux-armv7l/wheel/crispector2/report/html_templates
2024-07-02T12:20:13,282   copying build/lib/crispector2/report/html_templates/file_to_render_old.html -> build/bdist.linux-armv7l/wheel/crispector2/report/html_templates
2024-07-02T12:20:13,284   copying build/lib/crispector2/report/html_templates/crispector_logo.png -> build/bdist.linux-armv7l/wheel/crispector2/report/html_templates
2024-07-02T12:20:13,289   copying build/lib/crispector2/report/html_templates/final_layout_old.html -> build/bdist.linux-armv7l/wheel/crispector2/report/html_templates
2024-07-02T12:20:13,291   copying build/lib/crispector2/report/html_templates/site_file_to_render.html -> build/bdist.linux-armv7l/wheel/crispector2/report/html_templates
2024-07-02T12:20:13,293   copying build/lib/crispector2/report/html_templates/final_layout.html -> build/bdist.linux-armv7l/wheel/crispector2/report/html_templates
2024-07-02T12:20:13,295   copying build/lib/crispector2/report/html_templates/crispector_logo.jpg -> build/bdist.linux-armv7l/wheel/crispector2/report/html_templates
2024-07-02T12:20:13,300   copying build/lib/crispector2/report/html_templates/site_layout.html -> build/bdist.linux-armv7l/wheel/crispector2/report/html_templates
2024-07-02T12:20:13,302   copying build/lib/crispector2/report/html_report.py -> build/bdist.linux-armv7l/wheel/crispector2/report
2024-07-02T12:20:13,305   creating build/bdist.linux-armv7l/wheel/crispector2/utils
2024-07-02T12:20:13,305   copying build/lib/crispector2/utils/exceptions.py -> build/bdist.linux-armv7l/wheel/crispector2/utils
2024-07-02T12:20:13,307   copying build/lib/crispector2/utils/constants_and_types.py -> build/bdist.linux-armv7l/wheel/crispector2/utils
2024-07-02T12:20:13,310   copying build/lib/crispector2/utils/constants_and_types_old.py -> build/bdist.linux-armv7l/wheel/crispector2/utils
2024-07-02T12:20:13,312   copying build/lib/crispector2/utils/logger.py -> build/bdist.linux-armv7l/wheel/crispector2/utils
2024-07-02T12:20:13,314   copying build/lib/crispector2/utils/__init__.py -> build/bdist.linux-armv7l/wheel/crispector2/utils
2024-07-02T12:20:13,316   copying build/lib/crispector2/utils/configurator.py -> build/bdist.linux-armv7l/wheel/crispector2/utils
2024-07-02T12:20:13,318   creating build/bdist.linux-armv7l/wheel/crispector2/config
2024-07-02T12:20:13,319   copying build/lib/crispector2/config/__init__.py -> build/bdist.linux-armv7l/wheel/crispector2/config
2024-07-02T12:20:13,320   copying build/lib/crispector2/config/default_config.yml -> build/bdist.linux-armv7l/wheel/crispector2/config
2024-07-02T12:20:13,323   creating build/bdist.linux-armv7l/wheel/crispector2/allele
2024-07-02T12:20:13,324   copying build/lib/crispector2/allele/allele_tx.py -> build/bdist.linux-armv7l/wheel/crispector2/allele
2024-07-02T12:20:13,326   copying build/lib/crispector2/allele/allele_mock.py -> build/bdist.linux-armv7l/wheel/crispector2/allele
2024-07-02T12:20:13,329   copying build/lib/crispector2/allele/inconsistent_allele_freq.py -> build/bdist.linux-armv7l/wheel/crispector2/allele
2024-07-02T12:20:13,330   copying build/lib/crispector2/allele/random_reads_handler.py -> build/bdist.linux-armv7l/wheel/crispector2/allele
2024-07-02T12:20:13,333   copying build/lib/crispector2/allele/__init__.py -> build/bdist.linux-armv7l/wheel/crispector2/allele
2024-07-02T12:20:13,334   copying build/lib/crispector2/allele/allele_reference_df.py -> build/bdist.linux-armv7l/wheel/crispector2/allele
2024-07-02T12:20:13,336   copying build/lib/crispector2/crispector_main.py -> build/bdist.linux-armv7l/wheel/crispector2
2024-07-02T12:20:13,339   copying build/lib/crispector2/cli.py -> build/bdist.linux-armv7l/wheel/crispector2
2024-07-02T12:20:13,341   creating build/bdist.linux-armv7l/wheel/crispector2/modifications
2024-07-02T12:20:13,342   copying build/lib/crispector2/modifications/modification_tables.py -> build/bdist.linux-armv7l/wheel/crispector2/modifications
2024-07-02T12:20:13,344   copying build/lib/crispector2/modifications/__init__.py -> build/bdist.linux-armv7l/wheel/crispector2/modifications
2024-07-02T12:20:13,345   copying build/lib/crispector2/modifications/modification_types.py -> build/bdist.linux-armv7l/wheel/crispector2/modifications
2024-07-02T12:20:13,347   copying build/lib/crispector2/__init__.py -> build/bdist.linux-armv7l/wheel/crispector2
2024-07-02T12:20:13,350   creating build/bdist.linux-armv7l/wheel/crispector2/input_processing
2024-07-02T12:20:13,351   copying build/lib/crispector2/input_processing/input_processing.py -> build/bdist.linux-armv7l/wheel/crispector2/input_processing
2024-07-02T12:20:13,354   copying build/lib/crispector2/input_processing/alignment.py -> build/bdist.linux-armv7l/wheel/crispector2/input_processing
2024-07-02T12:20:13,357   copying build/lib/crispector2/input_processing/utils.py -> build/bdist.linux-armv7l/wheel/crispector2/input_processing
2024-07-02T12:20:13,359   copying build/lib/crispector2/input_processing/__init__.py -> build/bdist.linux-armv7l/wheel/crispector2/input_processing
2024-07-02T12:20:13,361   creating build/bdist.linux-armv7l/wheel/crispector2/algorithm
2024-07-02T12:20:13,362   copying build/lib/crispector2/algorithm/translocations_original.py -> build/bdist.linux-armv7l/wheel/crispector2/algorithm
2024-07-02T12:20:13,364   copying build/lib/crispector2/algorithm/binomial_probability.py -> build/bdist.linux-armv7l/wheel/crispector2/algorithm
2024-07-02T12:20:13,367   copying build/lib/crispector2/algorithm/core_algorithm.py -> build/bdist.linux-armv7l/wheel/crispector2/algorithm
2024-07-02T12:20:13,369   copying build/lib/crispector2/algorithm/translocations.py -> build/bdist.linux-armv7l/wheel/crispector2/algorithm
2024-07-02T12:20:13,371   copying build/lib/crispector2/algorithm/__init__.py -> build/bdist.linux-armv7l/wheel/crispector2/algorithm
2024-07-02T12:20:13,372   running install_egg_info
2024-07-02T12:20:13,375   Copying crispector2.egg-info to build/bdist.linux-armv7l/wheel/crispector2-2.1.1-py3.11.egg-info
2024-07-02T12:20:13,387   running install_scripts
2024-07-02T12:20:13,408   creating build/bdist.linux-armv7l/wheel/crispector2-2.1.1.dist-info/WHEEL
2024-07-02T12:20:13,410   creating '/tmp/pip-wheel-n7p9j6d7/.tmp-azj1h7rf/crispector2-2.1.1-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2024-07-02T12:20:13,413   adding 'crispector2/__init__.py'
2024-07-02T12:20:13,415   adding 'crispector2/cli.py'
2024-07-02T12:20:13,417   adding 'crispector2/crispector_main.py'
2024-07-02T12:20:13,419   adding 'crispector2/algorithm/__init__.py'
2024-07-02T12:20:13,421   adding 'crispector2/algorithm/binomial_probability.py'
2024-07-02T12:20:13,423   adding 'crispector2/algorithm/core_algorithm.py'
2024-07-02T12:20:13,424   adding 'crispector2/algorithm/translocations.py'
2024-07-02T12:20:13,426   adding 'crispector2/algorithm/translocations_original.py'
2024-07-02T12:20:13,428   adding 'crispector2/allele/__init__.py'
2024-07-02T12:20:13,433   adding 'crispector2/allele/allele_mock.py'
2024-07-02T12:20:13,434   adding 'crispector2/allele/allele_reference_df.py'
2024-07-02T12:20:13,436   adding 'crispector2/allele/allele_tx.py'
2024-07-02T12:20:13,437   adding 'crispector2/allele/inconsistent_allele_freq.py'
2024-07-02T12:20:13,441   adding 'crispector2/allele/random_reads_handler.py'
2024-07-02T12:20:13,442   adding 'crispector2/config/__init__.py'
2024-07-02T12:20:13,444   adding 'crispector2/config/default_config.yml'
2024-07-02T12:20:13,445   adding 'crispector2/input_processing/__init__.py'
2024-07-02T12:20:13,449   adding 'crispector2/input_processing/alignment.py'
2024-07-02T12:20:13,453   adding 'crispector2/input_processing/input_processing.py'
2024-07-02T12:20:13,455   adding 'crispector2/input_processing/utils.py'
2024-07-02T12:20:13,456   adding 'crispector2/modifications/__init__.py'
2024-07-02T12:20:13,458   adding 'crispector2/modifications/modification_tables.py'
2024-07-02T12:20:13,459   adding 'crispector2/modifications/modification_types.py'
2024-07-02T12:20:13,461   adding 'crispector2/report/__init__.py'
2024-07-02T12:20:13,462   adding 'crispector2/report/html_report.py'
2024-07-02T12:20:13,468   adding 'crispector2/report/visualization_and_output.py'
2024-07-02T12:20:13,471   adding 'crispector2/report/html_templates/.DS_Store'
2024-07-02T12:20:13,492   adding 'crispector2/report/html_templates/crispector_logo.jpg'
2024-07-02T12:20:13,515   adding 'crispector2/report/html_templates/crispector_logo.png'
2024-07-02T12:20:13,518   adding 'crispector2/report/html_templates/file_to_render.html'
2024-07-02T12:20:13,519   adding 'crispector2/report/html_templates/file_to_render_old.html'
2024-07-02T12:20:13,521   adding 'crispector2/report/html_templates/final_layout.html'
2024-07-02T12:20:13,523   adding 'crispector2/report/html_templates/final_layout_old.html'
2024-07-02T12:20:13,524   adding 'crispector2/report/html_templates/site_file_to_render.html'
2024-07-02T12:20:13,526   adding 'crispector2/report/html_templates/site_layout.html'
2024-07-02T12:20:13,527   adding 'crispector2/utils/__init__.py'
2024-07-02T12:20:13,529   adding 'crispector2/utils/configurator.py'
2024-07-02T12:20:13,530   adding 'crispector2/utils/constants_and_types.py'
2024-07-02T12:20:13,532   adding 'crispector2/utils/constants_and_types_old.py'
2024-07-02T12:20:13,533   adding 'crispector2/utils/exceptions.py'
2024-07-02T12:20:13,535   adding 'crispector2/utils/logger.py'
2024-07-02T12:20:13,537   adding 'crispector2-2.1.1.dist-info/LICENSE'
2024-07-02T12:20:13,540   adding 'crispector2-2.1.1.dist-info/METADATA'
2024-07-02T12:20:13,541   adding 'crispector2-2.1.1.dist-info/WHEEL'
2024-07-02T12:20:13,542   adding 'crispector2-2.1.1.dist-info/entry_points.txt'
2024-07-02T12:20:13,543   adding 'crispector2-2.1.1.dist-info/top_level.txt'
2024-07-02T12:20:13,544   adding 'crispector2-2.1.1.dist-info/RECORD'
2024-07-02T12:20:13,550   removing build/bdist.linux-armv7l/wheel
2024-07-02T12:20:13,683   Building wheel for crispector2 (pyproject.toml): finished with status 'done'
2024-07-02T12:20:13,698   Created wheel for crispector2: filename=crispector2-2.1.1-py3-none-any.whl size=440910 sha256=33c1af7cd0af56f5be4a7e66ffa5a62b3c11142283fb2a72524b094e599c9242
2024-07-02T12:20:13,699   Stored in directory: /tmp/pip-ephem-wheel-cache-wxuo8k97/wheels/b1/54/c4/c48cd58e5339e0e4d2debc8f1f3daef1fa061ceb1c0bb68417
2024-07-02T12:20:13,714 Successfully built crispector2
2024-07-02T12:20:13,727 Removed build tracker: '/tmp/pip-build-tracker-7g4myr6k'