2024-07-02T15:30:42,058 Created temporary directory: /tmp/pip-build-tracker-baife35b
2024-07-02T15:30:42,059 Initialized build tracking at /tmp/pip-build-tracker-baife35b
2024-07-02T15:30:42,059 Created build tracker: /tmp/pip-build-tracker-baife35b
2024-07-02T15:30:42,059 Entered build tracker: /tmp/pip-build-tracker-baife35b
2024-07-02T15:30:42,060 Created temporary directory: /tmp/pip-wheel-lq4k8z0z
2024-07-02T15:30:42,064 Created temporary directory: /tmp/pip-ephem-wheel-cache-ozjiex57
2024-07-02T15:30:42,088 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2024-07-02T15:30:42,092 2 location(s) to search for versions of moleculekit:
2024-07-02T15:30:42,092 * https://pypi.org/simple/moleculekit/
2024-07-02T15:30:42,092 * https://www.piwheels.org/simple/moleculekit/
2024-07-02T15:30:42,092 Fetching project page and analyzing links: https://pypi.org/simple/moleculekit/
2024-07-02T15:30:42,093 Getting page https://pypi.org/simple/moleculekit/
2024-07-02T15:30:42,094 Found index url https://pypi.org/simple/
2024-07-02T15:30:42,224 Fetched page https://pypi.org/simple/moleculekit/ as application/vnd.pypi.simple.v1+json
2024-07-02T15:30:42,268   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/91/e6/25b6853357dfef8a4026325e420d8213d34c17c078a2f13b60cbb6213ea3/moleculekit-0.1.4-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-07-02T15:30:42,268   Found link https://files.pythonhosted.org/packages/13/0f/a200e8e7632d3a521cfc7c15fa4d0270802efce40f98ac5a5cae58385b7e/moleculekit-0.1.4.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.4
2024-07-02T15:30:42,269   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/9f/a5/eac32fcb2e9ff0d30298aa4cec8e152c95d675c4dd1a1a5d7676986d4d75/moleculekit-0.1.5-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-07-02T15:30:42,269   Found link https://files.pythonhosted.org/packages/c5/6f/ae7d1b8513eb23ec0fa8e153c42fda0ee96f9e29c6e4808c5ff78c115e89/moleculekit-0.1.5.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.5
2024-07-02T15:30:42,269   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/e2/51/0f4e4b95d0d5c16664ede7f2cd31e6d6003e9c940a8fbe28c74de91de627/moleculekit-0.1.6-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-07-02T15:30:42,270   Found link https://files.pythonhosted.org/packages/08/fa/bc1b5918a1715901fd0ea1e796de9e6647276943983962616f2ddceb1c3b/moleculekit-0.1.6.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.6
2024-07-02T15:30:42,270   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/49/59/ddf780e7a574dde727d5db8b93c41bcc3d19436a8ae9f468bad5ea48529e/moleculekit-0.1.7-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-07-02T15:30:42,270   Found link https://files.pythonhosted.org/packages/c7/cb/d1b609de2d59d10a60ca74c9d1a044534f608e323dc16a87e5bd77ee0eb0/moleculekit-0.1.7.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.7
2024-07-02T15:30:42,270   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/5b/a4/59e6017c4e5b99be72d8e0eb6b6442061f338e309d91c25d607162298d11/moleculekit-0.1.8-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-07-02T15:30:42,270   Found link https://files.pythonhosted.org/packages/c0/1d/753c7461942457e39fb069504cdc381518a4ef18f486de0a42572236095e/moleculekit-0.1.8.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.8
2024-07-02T15:30:42,271   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/28/39/e4219020234475a17077f38ebcbdff236872d8e3a0455b376edb847f4141/moleculekit-0.1.9-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-07-02T15:30:42,271   Found link https://files.pythonhosted.org/packages/e0/c6/5d47b6257a3d1aca76d635d1dc8fffd6ed712fbe324bfeb2f2da47edda09/moleculekit-0.1.9.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.9
2024-07-02T15:30:42,271   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/3c/12/42a0a156c8a51b2ef9de7c720cbcd226c1b0a7d13dce7dcdd4c34480e05f/moleculekit-0.1.12-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-07-02T15:30:42,272   Found link https://files.pythonhosted.org/packages/12/9d/ef12aeb7165210a6d06f5a735640db6c49cda2597bebb3584e72f7a2aee5/moleculekit-0.1.12.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.12
2024-07-02T15:30:42,272   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/e0/de/ddea29e806547e8743801bd5b44f5f4b62e96a3b6aa1b59e7ae3c183e65d/moleculekit-0.1.14-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-07-02T15:30:42,272   Found link https://files.pythonhosted.org/packages/0f/b8/5dce8ade2a03ba18558275d58f1f586fc78b76442ca923e02e05b7aa4638/moleculekit-0.1.14.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.14
2024-07-02T15:30:42,272   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/98/67/c911fd0aab052ed8866739c282be96070bcafee75cad331165f356d0bf11/moleculekit-0.1.15-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-07-02T15:30:42,272   Found link https://files.pythonhosted.org/packages/be/5c/b803aa60ac93136e6fce9ab52ec50aec246481c5db76892780152f769d75/moleculekit-0.1.15.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.15
2024-07-02T15:30:42,273   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/4f/30/78d34f8541a5e0e7488b6d59c43b29cf4d9f42467553fb0cee41312409c7/moleculekit-0.1.16-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-07-02T15:30:42,273   Found link https://files.pythonhosted.org/packages/d3/39/0774efc740b7e6a6969e084e0eb126483049a60229de80cc09a1a4b78011/moleculekit-0.1.16.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.16
2024-07-02T15:30:42,273   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/ca/d8/f9dd491ee5984f59dbd1206bb41062543e1a1664bb002d4b2675ec3f882c/moleculekit-0.1.17-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-07-02T15:30:42,273   Found link https://files.pythonhosted.org/packages/f6/27/b820e1158e448f35830265eeb023ec7d7cc72272136a31ec5365a893174f/moleculekit-0.1.17.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.17
2024-07-02T15:30:42,274   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/0d/df/1d0dfd734e1d67c6ba1a1291b6f530c60eb3a65c25e2990d0fb62c73dbea/moleculekit-0.1.19-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-07-02T15:30:42,274   Found link https://files.pythonhosted.org/packages/6e/55/28d041ad7324e063e00ed2e0a5cd91d4c67e6cda3e62c24ab9c3ea2ad5dc/moleculekit-0.1.19.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.19
2024-07-02T15:30:42,274   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/f0/f3/18f3b015e5fdf04c0243d63132d4d29ab807b608bda9cab6de505c060196/moleculekit-0.1.21-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-07-02T15:30:42,274   Found link https://files.pythonhosted.org/packages/d7/2f/510d466d4e507523c6f8bb5323a03351e0a9e6422b29ab7a9d7b34101484/moleculekit-0.1.21.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.21
2024-07-02T15:30:42,275   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/2c/83/5bdc26bbc9c0dc6b7fa54260134f5545c6f8c01e50b4cc94de02d0a2f295/moleculekit-0.1.22-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-07-02T15:30:42,275   Found link https://files.pythonhosted.org/packages/28/80/3c053d293b0aad5df512b8c7bf1ef111c621ee80bbe08ea83763ca004a85/moleculekit-0.1.22.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.22
2024-07-02T15:30:42,275   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/5d/ec/9e6438a424607cba93fe71b89ef89dbff35369f133ed76ded895861ab290/moleculekit-0.1.23-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-07-02T15:30:42,275   Found link https://files.pythonhosted.org/packages/6d/c3/680633af7541d2c7ecf2fde4dc9661f107efaf55688d3f41d15407cb2248/moleculekit-0.1.23.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.23
2024-07-02T15:30:42,276   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/0b/02/f2bbd133b7e76a60bdc1d92d10621ce9f60f8eeaf97ed7dacae2e216cb2b/moleculekit-0.1.24-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-07-02T15:30:42,276   Found link https://files.pythonhosted.org/packages/7f/f7/48b8b09fbf6e368925a186ef4cb874ae0abfae6d5b81bd2656502290add5/moleculekit-0.1.24.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.24
2024-07-02T15:30:42,276   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/1e/bd/24146e575547d1fc8bd24b4b7d9a57cbe14c357ebf85d638df6421412465/moleculekit-0.1.26-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-07-02T15:30:42,276   Found link https://files.pythonhosted.org/packages/f5/6e/a9dafd4b3b109011d156a6f7c726925669e42435b6049859f3a0a050a87f/moleculekit-0.1.26.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.26
2024-07-02T15:30:42,276   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/fe/63/a0e65b18866805186e3a4ba2b8ece20b73b85ec1ce6b3f8597e0c2508178/moleculekit-0.1.27-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-07-02T15:30:42,277   Found link https://files.pythonhosted.org/packages/70/7e/a01a54d9e88eaf00ec47989f360fb98d58e871d500aa28c44b9c7b8bd7ff/moleculekit-0.1.27.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.27
2024-07-02T15:30:42,277   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/f1/db/8f0879b07acae5356393297640e1116c459d28b59d19e1bd328da94e4b7a/moleculekit-0.1.29-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-07-02T15:30:42,277   Found link https://files.pythonhosted.org/packages/dc/10/67c6720423554f257425330caf21342c13c59bc86aee634f369b481dad7b/moleculekit-0.1.29.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.29
2024-07-02T15:30:42,277   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/83/f1/2cb963c0a74d919761e8516fe969330c122c9874426ff8eef7834b9b0c62/moleculekit-0.1.30-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-07-02T15:30:42,278   Found link https://files.pythonhosted.org/packages/a9/87/cd070158b979d89c02edf2a1deb98ced11e6a442952ed67ebb4f281d6700/moleculekit-0.1.30.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.30
2024-07-02T15:30:42,278   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/cf/c4/f211cc80e281f1ee01040cfa490a65e874a54b5bedf2dfd73e3be6e72d93/moleculekit-0.1.31-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-07-02T15:30:42,278   Found link https://files.pythonhosted.org/packages/d7/8b/2b012f3371e5fceb875601e16c83a0ddfd5602d1cdceb953a4b36fc12200/moleculekit-0.1.31.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.31
2024-07-02T15:30:42,278   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/bf/2e/56178883cad4d2429d5cb5fb23d17be42663dea6da428df98f2b70be67a3/moleculekit-0.1.32-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-07-02T15:30:42,278   Found link https://files.pythonhosted.org/packages/97/34/992324fd9f1bb4d151b3383f601e3b69810e62c9d3530580ae8b43c4dcca/moleculekit-0.1.32.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.32
2024-07-02T15:30:42,279   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/7e/84/8e678afbcbd29c9b462973571bf3a043a7b5dbf7a98f1ac3dc82c3f5fc91/moleculekit-0.2.0-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-07-02T15:30:42,279   Found link https://files.pythonhosted.org/packages/10/f8/dfc9b84d16081239c0b6e3a2896e59db9f8b8617a67b7585e98789942324/moleculekit-0.2.0.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.0
2024-07-02T15:30:42,279   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/cb/a7/e706e1daa9d60d9ca9a96436564ec0612fe5fc850fdabad6e0c5174d52c5/moleculekit-0.2.1-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-07-02T15:30:42,279   Found link https://files.pythonhosted.org/packages/a8/ad/3c01c094324fcaf3a516aa3ab376ae4bec251dc2005f172217368e97b1db/moleculekit-0.2.1.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.1
2024-07-02T15:30:42,280   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/30/c3/e618404cdeb463f4f5f8fbfa1d5d45a81ea3c31cef86e9c6ca14a3d64589/moleculekit-0.2.2-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-07-02T15:30:42,280   Found link https://files.pythonhosted.org/packages/ce/2a/e4f0ea22c4e3be055409fbe8cda7802bd2cd1095926f62f2c78b7f447b46/moleculekit-0.2.2.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.2
2024-07-02T15:30:42,280   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/3c/c6/baf4c6dafa42a7f055cd29cad8a79b2e99baaf474e8ddcff833e02a8c9a2/moleculekit-0.2.3-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-07-02T15:30:42,280   Found link https://files.pythonhosted.org/packages/92/3b/d42fa900fbc359ad0b7806344c2eb303f06336fc6bad439db5550483ce5c/moleculekit-0.2.3.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.3
2024-07-02T15:30:42,281   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/d7/72/5674ef2a697583774eb66559f23b37026098badcc7e14bb09247c112baec/moleculekit-0.2.4-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-07-02T15:30:42,281   Found link https://files.pythonhosted.org/packages/7c/f3/5372063ddc10f57f1ea1aa29ab3f06d98d3d29c22d2a3d0c7c318ff7dc4a/moleculekit-0.2.4.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.4
2024-07-02T15:30:42,281   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/35/99/9bc21e28d9d4007623055b30fc43d18464649dfa39703ea80e9c32ba4607/moleculekit-0.2.5-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-07-02T15:30:42,281   Found link https://files.pythonhosted.org/packages/dd/7a/f6d8ac771d9e4c9117ab098a281231e6c4c3fadbbeafce69ac5b8370f2bd/moleculekit-0.2.5.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.5
2024-07-02T15:30:42,282   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/97/2d/1b5aeecf49f225f13c39534c7a93181f14bbb295f4b0bb50019d7efda717/moleculekit-0.2.6-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-07-02T15:30:42,282   Found link https://files.pythonhosted.org/packages/8a/04/f032c25621eac9ccab21dd25c0cb5d7150a21a5b0cde5ae21adb3e2be933/moleculekit-0.2.6.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.6
2024-07-02T15:30:42,282   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/7b/c3/6023b75cb8d60607d1932a6f3fa1fee5c99e88b692f25e3ed0072a4812a5/moleculekit-0.2.7-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-07-02T15:30:42,282   Found link https://files.pythonhosted.org/packages/a6/68/1eb4fb904763839ec4df4eab490702bd7245a6848ebfb693b165d5fbb153/moleculekit-0.2.7.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.7
2024-07-02T15:30:42,282   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/a3/85/452591c89b66659eaf24e216aef7818e3061a78bb1fc832f8616808949d4/moleculekit-0.2.8-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-07-02T15:30:42,283   Found link https://files.pythonhosted.org/packages/68/e0/0fe1302790061ea9e59370a988d67b877642c45a9e6d725819118cc3aae1/moleculekit-0.2.8.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.8
2024-07-02T15:30:42,283   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/90/90/238209bf8023d0779c0d4a9592786cc94e69d3dde60b5b17473d57c97b60/moleculekit-0.2.9-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-07-02T15:30:42,283   Found link https://files.pythonhosted.org/packages/bd/ad/aa7f2c7343506e17f61f2c4223dc912d4f099fdcc3e1736f393c9c31e118/moleculekit-0.2.9.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.9
2024-07-02T15:30:42,283   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/40/39/e7c3ea68289cf49ac58a53a55de11c71471a26c55268ce2a11dd3d0f4b1d/moleculekit-0.3.0-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
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2024-07-02T15:30:42,307   Found link https://files.pythonhosted.org/packages/eb/2e/c50f42aefc5f3510073bd5059723baff738a5ee171174441586000c444dc/moleculekit-1.1.8.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.1.8
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2024-07-02T15:30:42,308   Found link https://files.pythonhosted.org/packages/06/90/69685dad023515e231d8da7747793f33c497bb62496c4075e518f230da55/moleculekit-1.2.0.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.2.0
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2024-07-02T15:30:42,309   Found link https://files.pythonhosted.org/packages/29/f1/10cd916b3024b2efe08c06413dff5938859e01c8bc671cde8bf070758031/moleculekit-1.2.8.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.2.8
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2024-07-02T15:30:42,310   Found link https://files.pythonhosted.org/packages/2e/1c/a07b4d5f471fc90ba12e88e44675ddbf0ba4b0a658c2fc014491a7a27092/moleculekit-1.3.0.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.3.0
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2024-07-02T15:30:42,315   Found link https://files.pythonhosted.org/packages/0b/22/49372d8ecca8baa50e08ca3971786e207825556920bd5b19697d085bf681/moleculekit-1.4.9.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.4.9
2024-07-02T15:30:42,316   Found link https://files.pythonhosted.org/packages/3a/52/c87b6f8651063e38a723e8506788475ecf32f2b2e67fcf42739e8737f120/moleculekit-1.5.0.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.5.0
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2024-07-02T15:30:42,319   Found link https://files.pythonhosted.org/packages/46/81/f7be4e086eb469d0fda5d9be51c6fe2107d39c4127f64218774c40f5923a/moleculekit-1.5.5.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.5.5
2024-07-02T15:30:42,319   Found link https://files.pythonhosted.org/packages/d1/99/5866f661f25b1168804a5c26ab38edd26a7239d91b84c13fb129c1f84ab6/moleculekit-1.5.6.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.5.6
2024-07-02T15:30:42,320   Found link https://files.pythonhosted.org/packages/25/45/e228ef66e7b03b1613382490f07c3db31c9713e3878eb9766781076b8209/moleculekit-1.5.7.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.5.7
2024-07-02T15:30:42,320   Found link https://files.pythonhosted.org/packages/5e/4a/8e20ee9556cfcdc8c51aac44a054b76db1b9abf8c83124f51521397f7673/moleculekit-1.5.8.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.5.8
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2024-07-02T15:30:42,326   Found link https://files.pythonhosted.org/packages/4e/3a/29fb1aa0e3792fef88348885348370f39af453fb75d5505a208068d1c4ac/moleculekit-1.7.1.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.1
2024-07-02T15:30:42,326   Found link https://files.pythonhosted.org/packages/4a/13/dd6711d592d27e604c48830300f5596aafa1bbc479dc5eb49ed9797085eb/moleculekit-1.7.2.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.2
2024-07-02T15:30:42,327   Found link https://files.pythonhosted.org/packages/c7/cb/205d8925276863e2892c2c1ae2747cd4834cd3f174521172670ce43b50b8/moleculekit-1.7.3.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.3
2024-07-02T15:30:42,327   Found link https://files.pythonhosted.org/packages/6f/9e/2bce5993679a3666fd12803b93bb9a4daa59922f0ecdd26e9726df5d7f73/moleculekit-1.7.4.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.4
2024-07-02T15:30:42,328   Found link https://files.pythonhosted.org/packages/fa/63/993d55964a5afc9417ca31ab06a7d08f10b8fb38c63157bef0f350b4bb49/moleculekit-1.7.6.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.6
2024-07-02T15:30:42,328   Found link https://files.pythonhosted.org/packages/9b/3d/351d6444550ae455f20139e1d71ab138449c75b4a9782ac831dc9c6daa76/moleculekit-1.7.7.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.7
2024-07-02T15:30:42,329   Found link https://files.pythonhosted.org/packages/1b/7a/80d740239c506d7eea7cdba7576c503012556338861c10d5d2908e1912f7/moleculekit-1.7.8.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.8
2024-07-02T15:30:42,329   Found link https://files.pythonhosted.org/packages/05/e0/64dd3801f9b9cd011f8093d85201df3b259bab3502b87b6e37edadea0f21/moleculekit-1.7.9.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.9
2024-07-02T15:30:42,330   Found link https://files.pythonhosted.org/packages/0e/fd/650680f6dcf164b179c8a334c56fc7ba97d71519330f03bdc485307b6a0d/moleculekit-1.7.10.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.10
2024-07-02T15:30:42,330   Found link https://files.pythonhosted.org/packages/37/05/3105db0d4a63b49d0f4534b5e9d6a488b96b83b3aac621224338f3a6aa6b/moleculekit-1.7.12.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.12
2024-07-02T15:30:42,331   Found link https://files.pythonhosted.org/packages/08/ec/48d8122fea93c59592ae22dc29f16496087cdf31064793e6da173fcf2e36/moleculekit-1.7.13.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.13
2024-07-02T15:30:42,332   Found link https://files.pythonhosted.org/packages/46/79/442f4846c44e99a4e5d61b09e65cb57ec69b24ae4bf7e8b704f125238c6c/moleculekit-1.7.14.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.14
2024-07-02T15:30:42,332   Found link https://files.pythonhosted.org/packages/fa/fd/aa5c1911df4cf3bee9575fbc1cdbd39bcb1d9164e77c772fa938be672cc0/moleculekit-1.7.15.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.15
2024-07-02T15:30:42,333   Found link https://files.pythonhosted.org/packages/38/fe/74b265e75deb09844035690d506614163cd262a2d6bc7c83b4e2f28d4bb9/moleculekit-1.7.16.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.16
2024-07-02T15:30:42,333   Found link https://files.pythonhosted.org/packages/8b/2f/56c308933a9652bc40c41a53d57509ef38cc3c21d55b6f5570c2d9a865ed/moleculekit-1.7.17.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.17
2024-07-02T15:30:42,334   Found link https://files.pythonhosted.org/packages/96/a3/11b655506ce842ebea0b6d4c86883a538095687cb7bc9c4a179420971bd7/moleculekit-1.8.1.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.1
2024-07-02T15:30:42,334   Found link https://files.pythonhosted.org/packages/9d/d3/ead35117c0f3b3b1be847d561ff31bf59dfde0c49982bff106a3cc3876f0/moleculekit-1.8.2.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.2
2024-07-02T15:30:42,335   Found link https://files.pythonhosted.org/packages/23/e8/3ebe2bfb667296b1c79d4e59fdfb487116bfd8bec579ca242eec7ecad0c2/moleculekit-1.8.3.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.3
2024-07-02T15:30:42,335   Found link https://files.pythonhosted.org/packages/6f/4d/4a0e90a65d79829ae0bec8d857de2f8b7e18b6d60e05daa99cdbed0061c0/moleculekit-1.8.4.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.4
2024-07-02T15:30:42,336   Found link https://files.pythonhosted.org/packages/15/bb/f88884d7710aeb6290c69f180df912ce73beb4975ceea9f58aa28250737c/moleculekit-1.8.5.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.5
2024-07-02T15:30:42,336   Found link https://files.pythonhosted.org/packages/e4/a8/ef9f25e6e42436ceaecfd8bb0aadbf40855976374a46b8cf8d55000fa0a8/moleculekit-1.8.6.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.6
2024-07-02T15:30:42,337   Found link https://files.pythonhosted.org/packages/67/c5/ed682f5ea9a16915b98612e0b274b50303bb912ccb71ab106247e01be8c2/moleculekit-1.8.7.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.7
2024-07-02T15:30:42,337   Found link https://files.pythonhosted.org/packages/23/cd/efd06d75f4a0e866e23156ca3c771c99a22bcfb5f2d1b0f42f853b9cfd27/moleculekit-1.8.10.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.10
2024-07-02T15:30:42,338   Found link https://files.pythonhosted.org/packages/d2/1a/935247798d3097c5093e33b026729b2e218fefd40f58c4b8b8bd3fcf93b4/moleculekit-1.8.13.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.13
2024-07-02T15:30:42,339   Found link https://files.pythonhosted.org/packages/b0/1c/de17759f3cbae5b6b06b60242724a93570b332f657fdeff9e582b6bda391/moleculekit-1.8.14.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.14
2024-07-02T15:30:42,339   Found link https://files.pythonhosted.org/packages/20/a3/7476dceb769dd7bb318d84590a372f1974e978cefb204da16f2b4d99a34e/moleculekit-1.8.15.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.15
2024-07-02T15:30:42,340   Found link https://files.pythonhosted.org/packages/ce/8d/e060616d8e4e03f56d544939f3ccea7f3d665038a66bbf57ba0bcd1f4711/moleculekit-1.8.17.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.17
2024-07-02T15:30:42,340   Found link https://files.pythonhosted.org/packages/36/66/5b4a8da5461b4547e9b3e58f477ddf359701865a7e2ca5b0348fa20f54ae/moleculekit-1.8.18.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.18
2024-07-02T15:30:42,341   Found link https://files.pythonhosted.org/packages/51/33/5a8b10a29ca3c7a893f4a727341611121bc5ec9e2e0004e0c0d4748e33f7/moleculekit-1.8.19.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.19
2024-07-02T15:30:42,341   Found link https://files.pythonhosted.org/packages/0c/02/8cb68afa12c5dac1a7e486d39e9017883f51e17c4fd781898edf79cd2f00/moleculekit-1.8.20.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.20
2024-07-02T15:30:42,342   Found link https://files.pythonhosted.org/packages/65/3f/75e14ea7f71098018974144579774255fc66d1b7f7dae2ff858a87aac1e7/moleculekit-1.8.21.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.21
2024-07-02T15:30:42,342   Found link https://files.pythonhosted.org/packages/2c/2f/d00d1cf86239c509fb4dce470fcaf771e332724034b7db1846332924366a/moleculekit-1.8.22.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.22
2024-07-02T15:30:42,343   Found link https://files.pythonhosted.org/packages/55/ad/3c392a8ef92f6437da30769f6b9770591c79b77604db9aa264d5c0291edf/moleculekit-1.8.23.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.23
2024-07-02T15:30:42,344   Found link https://files.pythonhosted.org/packages/64/72/c2549970c717c236688863287da25f453fbf8b3ea3dee071af9e96be6592/moleculekit-1.8.24.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.24
2024-07-02T15:30:42,344   Found link https://files.pythonhosted.org/packages/f2/d0/2c92a559a74562405f0628bc7880908412790a87c494c9b73e3962c7baa9/moleculekit-1.8.26.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.26
2024-07-02T15:30:42,345   Found link https://files.pythonhosted.org/packages/0e/be/42a9eff89e9e0c3bc08940ead6c991f366ce109bb75ece11cc3b2996d001/moleculekit-1.8.27.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.27
2024-07-02T15:30:42,345   Found link https://files.pythonhosted.org/packages/30/bd/5ed4ddd1b8934c0594027c765bab0013b8081e818e92c2a98462f64d4dcd/moleculekit-1.8.28.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.28
2024-07-02T15:30:42,346   Found link https://files.pythonhosted.org/packages/2a/f9/1d7fe1a09e04049ace7db33faf27c26478ba9674a3cb39d1115fcd1d0679/moleculekit-1.8.29.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.29
2024-07-02T15:30:42,346   Found link https://files.pythonhosted.org/packages/d6/e2/f7f2b1870c62092c3d84ac0055b50305611a1253142cb592babdfcbdb266/moleculekit-1.8.31.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.31
2024-07-02T15:30:42,347   Found link https://files.pythonhosted.org/packages/5a/df/44bc133f3cbda05e621a72b9fef30ecaa96bc88bd5f47136a89b22d82b30/moleculekit-1.8.32.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.32
2024-07-02T15:30:42,347   Found link https://files.pythonhosted.org/packages/2b/34/e2642fe6f54ec67fdba107eb29968217af52f0b6ef1ac69f533164c6584e/moleculekit-1.8.33.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.33
2024-07-02T15:30:42,348   Found link https://files.pythonhosted.org/packages/d4/0f/1b1f0d41c3ff855afca374140213f1c43b3a9659eebc4460899fead843ff/moleculekit-1.8.34.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.34
2024-07-02T15:30:42,348   Found link https://files.pythonhosted.org/packages/26/6b/1104888679e9faf8b0e4e9b15586ea7532e171fe127c06e067c9ad563238/moleculekit-1.8.35.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.35
2024-07-02T15:30:42,349   Found link https://files.pythonhosted.org/packages/cf/5e/035ee54b5606e7489eed8e94571ca014339f5a6959902eff9f40bf4e0d7f/moleculekit-1.8.36.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.36
2024-07-02T15:30:42,349 Fetching project page and analyzing links: https://www.piwheels.org/simple/moleculekit/
2024-07-02T15:30:42,350 Getting page https://www.piwheels.org/simple/moleculekit/
2024-07-02T15:30:42,351 Found index url https://www.piwheels.org/simple/
2024-07-02T15:30:42,437 Fetched page https://www.piwheels.org/simple/moleculekit/ as text/html
2024-07-02T15:30:42,538   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.8.36-cp311-cp311-linux_armv6l.whl#sha256=e0fa24f661e395d9f38f9e1616422ff28e4ed401dd67c35c172ffccf1ea54038 (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
2024-07-02T15:30:42,538   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.8.36-cp311-cp311-linux_armv7l.whl#sha256=e0fa24f661e395d9f38f9e1616422ff28e4ed401dd67c35c172ffccf1ea54038 (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
2024-07-02T15:30:42,538   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.8.35-cp311-cp311-linux_armv6l.whl#sha256=39ce57e47150b9abdc5c79aee4f41a74f5f79b84caf1d9f038f68d172e3d11f3 (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
2024-07-02T15:30:42,538   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.8.35-cp311-cp311-linux_armv7l.whl#sha256=39ce57e47150b9abdc5c79aee4f41a74f5f79b84caf1d9f038f68d172e3d11f3 (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
2024-07-02T15:30:42,539   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.8.35-cp39-cp39-linux_armv6l.whl#sha256=bc4488b38699175360d9d00251d83750b68be24b494759299c9703344259af9a (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
2024-07-02T15:30:42,539   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.8.35-cp39-cp39-linux_armv7l.whl#sha256=bc4488b38699175360d9d00251d83750b68be24b494759299c9703344259af9a (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
2024-07-02T15:30:42,539   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.8.34-cp311-cp311-linux_armv6l.whl#sha256=942c98d7f1683d7846c9afa7242cfc6ce8754a90853a7129c5eae6f1081d1d0c (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
2024-07-02T15:30:42,539   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.8.34-cp311-cp311-linux_armv7l.whl#sha256=942c98d7f1683d7846c9afa7242cfc6ce8754a90853a7129c5eae6f1081d1d0c (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
2024-07-02T15:30:42,539   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.8.34-cp39-cp39-linux_armv6l.whl#sha256=3e3ca8c16ef993abbd889b734326ba2303227bdd4797f95337551e5a57b7c4ab (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
2024-07-02T15:30:42,540   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.8.34-cp39-cp39-linux_armv7l.whl#sha256=3e3ca8c16ef993abbd889b734326ba2303227bdd4797f95337551e5a57b7c4ab (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
2024-07-02T15:30:42,540   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.8.33-cp39-cp39-linux_armv6l.whl#sha256=3d6bb5aa26d1b0395385d5f79f151e71fc73ec74703c4bcd649823311c63a46d (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
2024-07-02T15:30:42,540   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.8.33-cp39-cp39-linux_armv7l.whl#sha256=3d6bb5aa26d1b0395385d5f79f151e71fc73ec74703c4bcd649823311c63a46d (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
2024-07-02T15:30:42,540   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.8.33-cp311-cp311-linux_armv6l.whl#sha256=d0cfcf678117cf5ef4f82d9243483dc4716205e56e437386690ac215787c35cf (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
2024-07-02T15:30:42,540   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.8.33-cp311-cp311-linux_armv7l.whl#sha256=d0cfcf678117cf5ef4f82d9243483dc4716205e56e437386690ac215787c35cf (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
2024-07-02T15:30:42,541   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.8.32-cp311-cp311-linux_armv6l.whl#sha256=1cb8ae4cdb11708fcd31f1c3de19ec4fb93bbecf44e8170e8464bc236f166efc (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
2024-07-02T15:30:42,541   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.8.32-cp311-cp311-linux_armv7l.whl#sha256=1cb8ae4cdb11708fcd31f1c3de19ec4fb93bbecf44e8170e8464bc236f166efc (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
2024-07-02T15:30:42,541   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.8.32-cp39-cp39-linux_armv6l.whl#sha256=088f285bb9579634e6a88a6ce995af058e2091f60ca38a9a71b19acea17e339b (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
2024-07-02T15:30:42,541   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.8.32-cp39-cp39-linux_armv7l.whl#sha256=088f285bb9579634e6a88a6ce995af058e2091f60ca38a9a71b19acea17e339b (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
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2024-07-02T15:30:42,579   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.14-cp37-cp37m-linux_armv6l.whl#sha256=5bc2de8230ca38d840e6f86860f469828a1720a95c76726db1ecb07a8af6de91 (from https://www.piwheels.org/simple/moleculekit/)
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2024-07-02T15:30:42,581   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.12-cp39-cp39-linux_armv7l.whl#sha256=d75d99aa397ece4f4d163fff8e78e6868ccbab4190016befc567c5f08d1cbbd4 (from https://www.piwheels.org/simple/moleculekit/)
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2024-07-02T15:30:42,582   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.8-cp37-cp37m-linux_armv6l.whl#sha256=e8d8fc1d3f31a50afae4252a2c403fb5b928eff4452d3954322d0d9b2d5383c5 (from https://www.piwheels.org/simple/moleculekit/)
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2024-07-02T15:30:42,582   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.8-cp39-cp39-linux_armv7l.whl#sha256=72aada7099cf1c7fbed38107b64c08622659cb763f35e5f2b75052a08f5cb853 (from https://www.piwheels.org/simple/moleculekit/)
2024-07-02T15:30:42,582   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.7-cp39-cp39-linux_armv6l.whl#sha256=b1bfb9de96ef11fdd768cccd1b894300c470a7389f83c8cca3f42ac636f3dcb7 (from https://www.piwheels.org/simple/moleculekit/)
2024-07-02T15:30:42,583   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.7-cp39-cp39-linux_armv7l.whl#sha256=b1bfb9de96ef11fdd768cccd1b894300c470a7389f83c8cca3f42ac636f3dcb7 (from https://www.piwheels.org/simple/moleculekit/)
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2024-07-02T15:30:42,584   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.5-cp37-cp37m-linux_armv6l.whl#sha256=30013f87dd3dc0c9b99cc9862ac0d0be618fe63faa7c7c4623be9cdd86396624 (from https://www.piwheels.org/simple/moleculekit/)
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2024-07-02T15:30:42,584   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.5-cp39-cp39-linux_armv6l.whl#sha256=f42eb6c315d3242355c8e36090f1f77ed92b768cefb595178e81eb89fa5a79d5 (from https://www.piwheels.org/simple/moleculekit/)
2024-07-02T15:30:42,584   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.5-cp39-cp39-linux_armv7l.whl#sha256=f42eb6c315d3242355c8e36090f1f77ed92b768cefb595178e81eb89fa5a79d5 (from https://www.piwheels.org/simple/moleculekit/)
2024-07-02T15:30:42,585   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.4-cp37-cp37m-linux_armv6l.whl#sha256=a30adf43b2972eb0763ce00b18dc4dffb61a74ac1da2391652cf53f73dba67ce (from https://www.piwheels.org/simple/moleculekit/)
2024-07-02T15:30:42,585   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.4-cp37-cp37m-linux_armv7l.whl#sha256=a30adf43b2972eb0763ce00b18dc4dffb61a74ac1da2391652cf53f73dba67ce (from https://www.piwheels.org/simple/moleculekit/)
2024-07-02T15:30:42,585   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.4-cp39-cp39-linux_armv6l.whl#sha256=e123a257574ee84a677c70d154c26fb75cdf29cfb3f9491b309d8ad47e37f3c0 (from https://www.piwheels.org/simple/moleculekit/)
2024-07-02T15:30:42,585   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.4-cp39-cp39-linux_armv7l.whl#sha256=e123a257574ee84a677c70d154c26fb75cdf29cfb3f9491b309d8ad47e37f3c0 (from https://www.piwheels.org/simple/moleculekit/)
2024-07-02T15:30:42,585   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.3-cp39-cp39-linux_armv6l.whl#sha256=c666ea91f79ecf6c6d99ca251e7f938e7e82208a01a91d39b827ba64eee4ce41 (from https://www.piwheels.org/simple/moleculekit/)
2024-07-02T15:30:42,585   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.3-cp39-cp39-linux_armv7l.whl#sha256=c666ea91f79ecf6c6d99ca251e7f938e7e82208a01a91d39b827ba64eee4ce41 (from https://www.piwheels.org/simple/moleculekit/)
2024-07-02T15:30:42,586   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.3-cp37-cp37m-linux_armv6l.whl#sha256=286faceca4683f35ce8e9aeefefdecee1c02150dfc9b7deb62015ce17f3f557c (from https://www.piwheels.org/simple/moleculekit/)
2024-07-02T15:30:42,586   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.3-cp37-cp37m-linux_armv7l.whl#sha256=286faceca4683f35ce8e9aeefefdecee1c02150dfc9b7deb62015ce17f3f557c (from https://www.piwheels.org/simple/moleculekit/)
2024-07-02T15:30:42,586   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.2-cp37-cp37m-linux_armv6l.whl#sha256=e7e709fde2552ca5cb602bf420ed89d740b1e75bd32c879ee33ffe3b747b109a (from https://www.piwheels.org/simple/moleculekit/)
2024-07-02T15:30:42,586   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.2-cp37-cp37m-linux_armv7l.whl#sha256=e7e709fde2552ca5cb602bf420ed89d740b1e75bd32c879ee33ffe3b747b109a (from https://www.piwheels.org/simple/moleculekit/)
2024-07-02T15:30:42,586   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.2-cp39-cp39-linux_armv6l.whl#sha256=390edc2399f77605c97d9fc8db3b63f282ba297c67fe9514db91ebec945fa2d7 (from https://www.piwheels.org/simple/moleculekit/)
2024-07-02T15:30:42,587   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.2-cp39-cp39-linux_armv7l.whl#sha256=390edc2399f77605c97d9fc8db3b63f282ba297c67fe9514db91ebec945fa2d7 (from https://www.piwheels.org/simple/moleculekit/)
2024-07-02T15:30:42,587   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.1-cp39-cp39-linux_armv6l.whl#sha256=aed227f0c49804421d71b6c949c0d24367a74207b8f855c59e4e73a89b5a93ed (from https://www.piwheels.org/simple/moleculekit/)
2024-07-02T15:30:42,587   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.1-cp39-cp39-linux_armv7l.whl#sha256=aed227f0c49804421d71b6c949c0d24367a74207b8f855c59e4e73a89b5a93ed (from https://www.piwheels.org/simple/moleculekit/)
2024-07-02T15:30:42,587   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.1-cp37-cp37m-linux_armv6l.whl#sha256=ad67f1f622d2a2a49358691e3e784e48277aa09cf1f984ed60e847892a3413d7 (from https://www.piwheels.org/simple/moleculekit/)
2024-07-02T15:30:42,587   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.1-cp37-cp37m-linux_armv7l.whl#sha256=ad67f1f622d2a2a49358691e3e784e48277aa09cf1f984ed60e847892a3413d7 (from https://www.piwheels.org/simple/moleculekit/)
2024-07-02T15:30:42,587   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.0-cp37-cp37m-linux_armv6l.whl#sha256=ab05d1bc06d0d249cbb4871d51e6dca4b9e8474288d86326bd7dd603b9b99820 (from https://www.piwheels.org/simple/moleculekit/)
2024-07-02T15:30:42,588   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.0-cp37-cp37m-linux_armv7l.whl#sha256=ab05d1bc06d0d249cbb4871d51e6dca4b9e8474288d86326bd7dd603b9b99820 (from https://www.piwheels.org/simple/moleculekit/)
2024-07-02T15:30:42,588   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.0-cp39-cp39-linux_armv6l.whl#sha256=7f76858d50e6bb4611f32f053be82003c583d01ad83aa44b6f220dce89a7856f (from https://www.piwheels.org/simple/moleculekit/)
2024-07-02T15:30:42,588   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.0-cp39-cp39-linux_armv7l.whl#sha256=7f76858d50e6bb4611f32f053be82003c583d01ad83aa44b6f220dce89a7856f (from https://www.piwheels.org/simple/moleculekit/)
2024-07-02T15:30:42,588   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.9-cp37-cp37m-linux_armv6l.whl#sha256=34809734c61c1fcc4c4de1857dadfb84e726cbfe0dd0b60fce249166d29a3bb2 (from https://www.piwheels.org/simple/moleculekit/)
2024-07-02T15:30:42,588   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.9-cp37-cp37m-linux_armv7l.whl#sha256=34809734c61c1fcc4c4de1857dadfb84e726cbfe0dd0b60fce249166d29a3bb2 (from https://www.piwheels.org/simple/moleculekit/)
2024-07-02T15:30:42,589   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.9-cp39-cp39-linux_armv6l.whl#sha256=0f20a256b92c66dbaac370cf1a01b885b10f1371beacaec65ec35ce8ac935afb (from https://www.piwheels.org/simple/moleculekit/)
2024-07-02T15:30:42,589   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.9-cp39-cp39-linux_armv7l.whl#sha256=0f20a256b92c66dbaac370cf1a01b885b10f1371beacaec65ec35ce8ac935afb (from https://www.piwheels.org/simple/moleculekit/)
2024-07-02T15:30:42,589   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.6-cp37-cp37m-linux_armv6l.whl#sha256=93f57ab9c01697fb9f28ed39e4c5c32828e862bf410f556fdbc43c7a72825cb2 (from https://www.piwheels.org/simple/moleculekit/)
2024-07-02T15:30:42,589   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.6-cp37-cp37m-linux_armv7l.whl#sha256=93f57ab9c01697fb9f28ed39e4c5c32828e862bf410f556fdbc43c7a72825cb2 (from https://www.piwheels.org/simple/moleculekit/)
2024-07-02T15:30:42,589   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.6-cp39-cp39-linux_armv6l.whl#sha256=a8a1cb7f5b851f5f58273e5d12aa871e5086f6bfd844f33f0b4bf20c83f429ec (from https://www.piwheels.org/simple/moleculekit/)
2024-07-02T15:30:42,590   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.6-cp39-cp39-linux_armv7l.whl#sha256=a8a1cb7f5b851f5f58273e5d12aa871e5086f6bfd844f33f0b4bf20c83f429ec (from https://www.piwheels.org/simple/moleculekit/)
2024-07-02T15:30:42,590   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.5-cp37-cp37m-linux_armv6l.whl#sha256=25d1bdfd25f377e21e8a522d9f3cd2ce3896cf857957c8ec876c69f4de8d53f5 (from https://www.piwheels.org/simple/moleculekit/)
2024-07-02T15:30:42,590   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.5-cp37-cp37m-linux_armv7l.whl#sha256=25d1bdfd25f377e21e8a522d9f3cd2ce3896cf857957c8ec876c69f4de8d53f5 (from https://www.piwheels.org/simple/moleculekit/)
2024-07-02T15:30:42,590   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.5-cp39-cp39-linux_armv6l.whl#sha256=de79a8099ce28793ecc89cf8dfbcb6542a270d00290c96903280f704e2ec22e7 (from https://www.piwheels.org/simple/moleculekit/)
2024-07-02T15:30:42,590   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.5-cp39-cp39-linux_armv7l.whl#sha256=de79a8099ce28793ecc89cf8dfbcb6542a270d00290c96903280f704e2ec22e7 (from https://www.piwheels.org/simple/moleculekit/)
2024-07-02T15:30:42,590   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.3-cp37-cp37m-linux_armv6l.whl#sha256=2d64935710bb05965f486f3bd9f258d8d479dc5c00dc1535ba5e285c8786dcf1 (from https://www.piwheels.org/simple/moleculekit/)
2024-07-02T15:30:42,591   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.3-cp37-cp37m-linux_armv7l.whl#sha256=2d64935710bb05965f486f3bd9f258d8d479dc5c00dc1535ba5e285c8786dcf1 (from https://www.piwheels.org/simple/moleculekit/)
2024-07-02T15:30:42,591   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.3-cp39-cp39-linux_armv6l.whl#sha256=c1983524eecc8638287c4a1e09dda961635e861bf6f9342dc566a9f9a4c0b771 (from https://www.piwheels.org/simple/moleculekit/)
2024-07-02T15:30:42,591   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.3-cp39-cp39-linux_armv7l.whl#sha256=c1983524eecc8638287c4a1e09dda961635e861bf6f9342dc566a9f9a4c0b771 (from https://www.piwheels.org/simple/moleculekit/)
2024-07-02T15:30:42,591   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.2-cp39-cp39-linux_armv6l.whl#sha256=24cfa04ff95ecb68f6d261ba4176e979846a0424ba781a1e314ca233c5206ae7 (from https://www.piwheels.org/simple/moleculekit/)
2024-07-02T15:30:42,591   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.2-cp39-cp39-linux_armv7l.whl#sha256=24cfa04ff95ecb68f6d261ba4176e979846a0424ba781a1e314ca233c5206ae7 (from https://www.piwheels.org/simple/moleculekit/)
2024-07-02T15:30:42,592   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.2-cp37-cp37m-linux_armv6l.whl#sha256=3fa03496ffbd230b85c032f9e1ba3129efbd4c37f6509c6cfef258ce69ed6925 (from https://www.piwheels.org/simple/moleculekit/)
2024-07-02T15:30:42,592   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.2-cp37-cp37m-linux_armv7l.whl#sha256=3fa03496ffbd230b85c032f9e1ba3129efbd4c37f6509c6cfef258ce69ed6925 (from https://www.piwheels.org/simple/moleculekit/)
2024-07-02T15:30:42,592   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.1-cp37-cp37m-linux_armv6l.whl#sha256=584155aa2ddfa324fcd872934f8b25a296c40b34797209bb754f4a641a5b27eb (from https://www.piwheels.org/simple/moleculekit/)
2024-07-02T15:30:42,592   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.1-cp37-cp37m-linux_armv7l.whl#sha256=584155aa2ddfa324fcd872934f8b25a296c40b34797209bb754f4a641a5b27eb (from https://www.piwheels.org/simple/moleculekit/)
2024-07-02T15:30:42,592   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.1-cp39-cp39-linux_armv6l.whl#sha256=41b03e81b9cd75c716643741a53b8d4d5aeb1633b5e07091c1a7355b6b44d233 (from https://www.piwheels.org/simple/moleculekit/)
2024-07-02T15:30:42,593   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.1-cp39-cp39-linux_armv7l.whl#sha256=41b03e81b9cd75c716643741a53b8d4d5aeb1633b5e07091c1a7355b6b44d233 (from https://www.piwheels.org/simple/moleculekit/)
2024-07-02T15:30:42,593   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.0-cp37-cp37m-linux_armv6l.whl#sha256=b0ac5fea57fee9d962de25688ffde053c705daa15588886ea6aa7d5ab0986077 (from https://www.piwheels.org/simple/moleculekit/)
2024-07-02T15:30:42,593   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.0-cp37-cp37m-linux_armv7l.whl#sha256=b0ac5fea57fee9d962de25688ffde053c705daa15588886ea6aa7d5ab0986077 (from https://www.piwheels.org/simple/moleculekit/)
2024-07-02T15:30:42,593   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.0-cp39-cp39-linux_armv6l.whl#sha256=1b6361e98ea6ec0f3a7a4cce9ec9569a117c26deb95d0ce2bcea9d6f1f38d503 (from https://www.piwheels.org/simple/moleculekit/)
2024-07-02T15:30:42,593   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.0-cp39-cp39-linux_armv7l.whl#sha256=1b6361e98ea6ec0f3a7a4cce9ec9569a117c26deb95d0ce2bcea9d6f1f38d503 (from https://www.piwheels.org/simple/moleculekit/)
2024-07-02T15:30:42,593   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.9-cp37-cp37m-linux_armv6l.whl#sha256=a6ee5c9ac5b2648bb87ca08a6491d955004770b58180224d6d24bdb8cec17458 (from https://www.piwheels.org/simple/moleculekit/)
2024-07-02T15:30:42,594   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.9-cp37-cp37m-linux_armv7l.whl#sha256=a6ee5c9ac5b2648bb87ca08a6491d955004770b58180224d6d24bdb8cec17458 (from https://www.piwheels.org/simple/moleculekit/)
2024-07-02T15:30:42,594   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.9-cp39-cp39-linux_armv6l.whl#sha256=223cbac9f53d732be3d157f8e68c124c79439d057ec079594c681d7c5327f342 (from https://www.piwheels.org/simple/moleculekit/)
2024-07-02T15:30:42,594   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.9-cp39-cp39-linux_armv7l.whl#sha256=223cbac9f53d732be3d157f8e68c124c79439d057ec079594c681d7c5327f342 (from https://www.piwheels.org/simple/moleculekit/)
2024-07-02T15:30:42,594   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.8-cp37-cp37m-linux_armv6l.whl#sha256=19e3b710f4af1a0cb530060979c4216d87f0bd8a71e9f41824cf3565abbcbbdb (from https://www.piwheels.org/simple/moleculekit/)
2024-07-02T15:30:42,594   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.8-cp37-cp37m-linux_armv7l.whl#sha256=19e3b710f4af1a0cb530060979c4216d87f0bd8a71e9f41824cf3565abbcbbdb (from https://www.piwheels.org/simple/moleculekit/)
2024-07-02T15:30:42,595   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.8-cp39-cp39-linux_armv6l.whl#sha256=c18e44dbd9cf047134d440ff4fbb18722a3fdb0f348d431e8b7bed7dd398bd6e (from https://www.piwheels.org/simple/moleculekit/)
2024-07-02T15:30:42,595   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.8-cp39-cp39-linux_armv7l.whl#sha256=c18e44dbd9cf047134d440ff4fbb18722a3fdb0f348d431e8b7bed7dd398bd6e (from https://www.piwheels.org/simple/moleculekit/)
2024-07-02T15:30:42,595   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.7-cp37-cp37m-linux_armv6l.whl#sha256=8e63b6afb6715f46aae20e77b81958cdc652a7b1b6d294c5d559f7f06d5a5106 (from https://www.piwheels.org/simple/moleculekit/)
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2024-07-02T15:30:42,606   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.1.8-py3-none-any.whl#sha256=716d25ae18a4a9a3c8cfb1f0b0399f72463490e4f85a66631f3e77c0ddc427e3 (from https://www.piwheels.org/simple/moleculekit/)
2024-07-02T15:30:42,607   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.1.7-py3-none-any.whl#sha256=899ef09b80e1ad2e3931cb2023fae09cfeecd45b83fade6c8e8739126ca67a20 (from https://www.piwheels.org/simple/moleculekit/)
2024-07-02T15:30:42,607   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.1.6-py3-none-any.whl#sha256=0a288cd1efd660482dcc967caed02315dd8f02c19a0287eee0b8519d761db1b3 (from https://www.piwheels.org/simple/moleculekit/)
2024-07-02T15:30:42,607   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.1.5-py3-none-any.whl#sha256=2f111e31b3f90e63ca0154c528585208b8bd41a065aa0078325683f4b36eacec (from https://www.piwheels.org/simple/moleculekit/)
2024-07-02T15:30:42,607   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.1.4-py3-none-any.whl#sha256=5784491ff294e145a00311f8239aaa0b92c12605db0508ee3e10469b80d4cadd (from https://www.piwheels.org/simple/moleculekit/)
2024-07-02T15:30:42,607 Skipping link: not a file: https://www.piwheels.org/simple/moleculekit/
2024-07-02T15:30:42,608 Skipping link: not a file: https://pypi.org/simple/moleculekit/
2024-07-02T15:30:42,650 Given no hashes to check 1 links for project 'moleculekit': discarding no candidates
2024-07-02T15:30:42,668 Collecting moleculekit==1.8.36
2024-07-02T15:30:42,670   Created temporary directory: /tmp/pip-unpack-0fiz7a4h
2024-07-02T15:30:42,715   Downloading moleculekit-1.8.36.tar.gz (6.8 MB)
2024-07-02T15:30:44,949   Added moleculekit==1.8.36 from https://files.pythonhosted.org/packages/cf/5e/035ee54b5606e7489eed8e94571ca014339f5a6959902eff9f40bf4e0d7f/moleculekit-1.8.36.tar.gz to build tracker '/tmp/pip-build-tracker-baife35b'
2024-07-02T15:30:44,958   Created temporary directory: /tmp/pip-build-env-3gnvbl2f
2024-07-02T15:30:44,968   Installing build dependencies: started
2024-07-02T15:30:44,969   Running command pip subprocess to install build dependencies
2024-07-02T15:30:46,136   Using pip 24.0 from /usr/local/lib/python3.9/dist-packages/pip (python 3.9)
2024-07-02T15:30:46,663   Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2024-07-02T15:30:48,140   Collecting setuptools
2024-07-02T15:30:48,156     Using cached https://www.piwheels.org/simple/setuptools/setuptools-70.2.0-py3-none-any.whl (930 kB)
2024-07-02T15:30:49,277   Collecting numpy>=1.18.5
2024-07-02T15:30:49,296     Using cached https://www.piwheels.org/simple/numpy/numpy-2.0.0-cp39-cp39-linux_armv7l.whl (5.8 MB)
2024-07-02T15:30:50,892   Collecting Cython>=0.29.21
2024-07-02T15:30:50,910     Using cached https://www.piwheels.org/simple/cython/Cython-3.0.10-cp39-cp39-linux_armv7l.whl (10.7 MB)
2024-07-02T15:30:51,521   Collecting toml
2024-07-02T15:30:51,544     Using cached https://www.piwheels.org/simple/toml/toml-0.10.2-py2.py3-none-any.whl (16 kB)
2024-07-02T15:30:51,662   Collecting versioneer==0.28 (from versioneer[toml]==0.28)
2024-07-02T15:30:51,712     Using cached https://www.piwheels.org/simple/versioneer/versioneer-0.28-py3-none-any.whl (45 kB)
2024-07-02T15:30:51,856   Collecting tomli (from versioneer[toml]==0.28)
2024-07-02T15:30:51,874     Using cached https://www.piwheels.org/simple/tomli/tomli-2.0.1-py3-none-any.whl (12 kB)
2024-07-02T15:30:53,702   Installing collected packages: versioneer, tomli, toml, setuptools, numpy, Cython
2024-07-02T15:30:53,739     Creating /tmp/pip-build-env-3gnvbl2f/overlay/bin
2024-07-02T15:30:53,742     changing mode of /tmp/pip-build-env-3gnvbl2f/overlay/bin/versioneer to 755
2024-07-02T15:31:04,617     changing mode of /tmp/pip-build-env-3gnvbl2f/overlay/bin/f2py to 755
2024-07-02T15:31:04,619     changing mode of /tmp/pip-build-env-3gnvbl2f/overlay/bin/numpy-config to 755
2024-07-02T15:31:08,066     changing mode of /tmp/pip-build-env-3gnvbl2f/overlay/bin/cygdb to 755
2024-07-02T15:31:08,068     changing mode of /tmp/pip-build-env-3gnvbl2f/overlay/bin/cython to 755
2024-07-02T15:31:08,071     changing mode of /tmp/pip-build-env-3gnvbl2f/overlay/bin/cythonize to 755
2024-07-02T15:31:08,095   Successfully installed Cython-3.0.10 numpy-2.0.0 setuptools-70.2.0 toml-0.10.2 tomli-2.0.1 versioneer-0.28

2024-07-02T15:31:08,281   [notice] A new release of pip is available: 24.0 -> 24.1.1
2024-07-02T15:31:08,281   [notice] To update, run: python3 -m pip install --upgrade pip
2024-07-02T15:31:08,760   Installing build dependencies: finished with status 'done'
2024-07-02T15:31:08,765   Getting requirements to build wheel: started
2024-07-02T15:31:08,766   Running command Getting requirements to build wheel
2024-07-02T15:31:47,719   warning: moleculekit/wrapping/wrapping.pyx:47:4: Unreachable code
2024-07-02T15:31:57,081   Compiling moleculekit/interactions/hbonds/hbonds.pyx because it depends on /tmp/pip-build-env-3gnvbl2f/overlay/lib/python3.9/site-packages/Cython/Includes/libcpp/vector.pxd.
2024-07-02T15:31:57,082   Compiling moleculekit/interactions/pipi/pipi.pyx because it depends on /tmp/pip-build-env-3gnvbl2f/overlay/lib/python3.9/site-packages/Cython/Includes/libcpp/vector.pxd.
2024-07-02T15:31:57,082   Compiling moleculekit/interactions/cationpi/cationpi.pyx because it depends on /tmp/pip-build-env-3gnvbl2f/overlay/lib/python3.9/site-packages/Cython/Includes/libcpp/vector.pxd.
2024-07-02T15:31:57,082   Compiling moleculekit/interactions/sigmahole/sigmahole.pyx because it depends on /tmp/pip-build-env-3gnvbl2f/overlay/lib/python3.9/site-packages/Cython/Includes/libcpp/vector.pxd.
2024-07-02T15:31:57,082   Compiling moleculekit/wrapping/wrapping.pyx because it depends on /tmp/pip-build-env-3gnvbl2f/overlay/lib/python3.9/site-packages/Cython/Includes/libcpp/vector.pxd.
2024-07-02T15:31:57,082   Compiling moleculekit/bondguesser_utils/bondguesser_utils.pyx because it depends on /tmp/pip-build-env-3gnvbl2f/overlay/lib/python3.9/site-packages/Cython/Includes/libcpp/vector.pxd.
2024-07-02T15:31:57,082   Compiling moleculekit/atomselect_utils/atomselect_utils.pyx because it depends on /tmp/pip-build-env-3gnvbl2f/overlay/lib/python3.9/site-packages/Cython/Includes/libcpp/vector.pxd.
2024-07-02T15:31:57,082   Compiling moleculekit/distance_utils/distance_utils.pyx because it depends on /tmp/pip-build-env-3gnvbl2f/overlay/lib/python3.9/site-packages/Cython/Includes/libcpp/vector.pxd.
2024-07-02T15:31:57,083   Compiling moleculekit/occupancy_utils/occupancy_utils.pyx because it depends on /tmp/pip-build-env-3gnvbl2f/overlay/lib/python3.9/site-packages/Cython/Includes/libcpp/vector.pxd.
2024-07-02T15:31:57,083   Compiling moleculekit/cython_utils/cython_utils.pyx because it depends on /tmp/pip-build-env-3gnvbl2f/overlay/lib/python3.9/site-packages/Cython/Includes/libcpp/vector.pxd.
2024-07-02T15:31:57,083   Compiling moleculekit/fileformats/xtc/xtc.pyx because it depends on /tmp/pip-build-env-3gnvbl2f/overlay/lib/python3.9/site-packages/Cython/Includes/libc/string.pxd.
2024-07-02T15:31:57,083   Compiling moleculekit/fileformats/xtc/trr.pyx because it depends on /tmp/pip-build-env-3gnvbl2f/overlay/lib/python3.9/site-packages/Cython/Includes/libc/string.pxd.
2024-07-02T15:31:57,083   Compiling moleculekit/fileformats/dcd/dcd.pyx because it depends on /tmp/pip-build-env-3gnvbl2f/overlay/lib/python3.9/site-packages/Cython/Includes/libc/string.pxd.
2024-07-02T15:31:57,083   Compiling moleculekit/fileformats/binpos/binpos.pyx because it depends on /tmp/pip-build-env-3gnvbl2f/overlay/lib/python3.9/site-packages/Cython/Includes/libc/string.pxd.
2024-07-02T15:31:57,083   Compiling moleculekit/tmalign/tmalign_util.pyx because it depends on /tmp/pip-build-env-3gnvbl2f/overlay/lib/python3.9/site-packages/Cython/Includes/libcpp/vector.pxd.
2024-07-02T15:31:57,084   [ 1/15] Cythonizing moleculekit/atomselect_utils/atomselect_utils.pyx
2024-07-02T15:31:57,084   [ 2/15] Cythonizing moleculekit/bondguesser_utils/bondguesser_utils.pyx
2024-07-02T15:31:57,084   [ 3/15] Cythonizing moleculekit/cython_utils/cython_utils.pyx
2024-07-02T15:31:57,084   [ 4/15] Cythonizing moleculekit/distance_utils/distance_utils.pyx
2024-07-02T15:31:57,084   [ 5/15] Cythonizing moleculekit/fileformats/dcd/dcd.pyx
2024-07-02T15:31:57,084   [ 6/15] Cythonizing moleculekit/interactions/cationpi/cationpi.pyx
2024-07-02T15:31:57,084   [ 7/15] Cythonizing moleculekit/interactions/hbonds/hbonds.pyx
2024-07-02T15:31:57,084   [ 8/15] Cythonizing moleculekit/interactions/pipi/pipi.pyx
2024-07-02T15:31:57,085   [ 9/15] Cythonizing moleculekit/interactions/sigmahole/sigmahole.pyx
2024-07-02T15:31:57,085   [10/15] Cythonizing moleculekit/occupancy_utils/occupancy_utils.pyx
2024-07-02T15:31:57,085   [11/15] Cythonizing moleculekit/tmalign/tmalign_util.pyx
2024-07-02T15:31:57,085   [12/15] Cythonizing moleculekit/wrapping/wrapping.pyx
2024-07-02T15:31:57,085   [13/15] Cythonizing moleculekit/fileformats/binpos/binpos.pyx
2024-07-02T15:31:57,085   [14/15] Cythonizing moleculekit/fileformats/xtc/trr.pyx
2024-07-02T15:31:57,085   [15/15] Cythonizing moleculekit/fileformats/xtc/xtc.pyx
2024-07-02T15:31:57,417   running egg_info
2024-07-02T15:31:57,424   writing moleculekit.egg-info/PKG-INFO
2024-07-02T15:31:57,427   writing dependency_links to moleculekit.egg-info/dependency_links.txt
2024-07-02T15:31:57,430   writing requirements to moleculekit.egg-info/requires.txt
2024-07-02T15:31:57,431   writing top-level names to moleculekit.egg-info/top_level.txt
2024-07-02T15:31:57,464   dependency /tmp/pip-build-env-3gnvbl2f/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-02T15:31:57,464   dependency /tmp/pip-build-env-3gnvbl2f/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-07-02T15:31:57,464   dependency /tmp/pip-build-env-3gnvbl2f/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-02T15:31:57,464   dependency /tmp/pip-build-env-3gnvbl2f/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-07-02T15:31:57,464   dependency /tmp/pip-build-env-3gnvbl2f/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-07-02T15:31:57,465   dependency /tmp/pip-build-env-3gnvbl2f/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-02T15:31:57,465   dependency /tmp/pip-build-env-3gnvbl2f/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-07-02T15:31:57,465   dependency /tmp/pip-build-env-3gnvbl2f/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-02T15:31:57,465   dependency /tmp/pip-build-env-3gnvbl2f/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-07-02T15:31:57,465   dependency /tmp/pip-build-env-3gnvbl2f/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-07-02T15:31:57,465   dependency /tmp/pip-build-env-3gnvbl2f/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-02T15:31:57,465   dependency /tmp/pip-build-env-3gnvbl2f/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-07-02T15:31:57,466   dependency /tmp/pip-build-env-3gnvbl2f/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-02T15:31:57,466   dependency /tmp/pip-build-env-3gnvbl2f/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-07-02T15:31:57,466   dependency /tmp/pip-build-env-3gnvbl2f/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-07-02T15:31:57,466   dependency /tmp/pip-build-env-3gnvbl2f/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-02T15:31:57,466   dependency /tmp/pip-build-env-3gnvbl2f/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-07-02T15:31:57,466   dependency /tmp/pip-build-env-3gnvbl2f/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-02T15:31:57,466   dependency /tmp/pip-build-env-3gnvbl2f/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-07-02T15:31:57,466   dependency /tmp/pip-build-env-3gnvbl2f/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-07-02T15:31:57,467   dependency /tmp/pip-build-env-3gnvbl2f/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-02T15:31:57,467   dependency /tmp/pip-build-env-3gnvbl2f/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-07-02T15:31:57,467   dependency /tmp/pip-build-env-3gnvbl2f/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-02T15:31:57,467   dependency /tmp/pip-build-env-3gnvbl2f/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-07-02T15:31:57,467   dependency /tmp/pip-build-env-3gnvbl2f/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-07-02T15:31:57,467   dependency /tmp/pip-build-env-3gnvbl2f/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-02T15:31:57,467   dependency /tmp/pip-build-env-3gnvbl2f/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-07-02T15:31:57,467   dependency /tmp/pip-build-env-3gnvbl2f/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-02T15:31:57,468   dependency /tmp/pip-build-env-3gnvbl2f/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-07-02T15:31:57,468   dependency /tmp/pip-build-env-3gnvbl2f/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-07-02T15:31:57,468   dependency /tmp/pip-build-env-3gnvbl2f/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-02T15:31:57,468   dependency /tmp/pip-build-env-3gnvbl2f/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-07-02T15:31:57,468   dependency /tmp/pip-build-env-3gnvbl2f/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-02T15:31:57,468   dependency /tmp/pip-build-env-3gnvbl2f/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-07-02T15:31:57,468   dependency /tmp/pip-build-env-3gnvbl2f/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-07-02T15:31:57,468   dependency /tmp/pip-build-env-3gnvbl2f/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-02T15:31:57,469   dependency /tmp/pip-build-env-3gnvbl2f/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-07-02T15:31:57,469   dependency /tmp/pip-build-env-3gnvbl2f/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-02T15:31:57,469   dependency /tmp/pip-build-env-3gnvbl2f/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-07-02T15:31:57,469   dependency /tmp/pip-build-env-3gnvbl2f/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-07-02T15:31:57,469   dependency /tmp/pip-build-env-3gnvbl2f/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-02T15:31:57,469   dependency /tmp/pip-build-env-3gnvbl2f/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-07-02T15:31:57,469   dependency /tmp/pip-build-env-3gnvbl2f/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-02T15:31:57,470   dependency /tmp/pip-build-env-3gnvbl2f/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-07-02T15:31:57,470   dependency /tmp/pip-build-env-3gnvbl2f/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-07-02T15:31:57,470   dependency /tmp/pip-build-env-3gnvbl2f/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-02T15:31:57,470   dependency /tmp/pip-build-env-3gnvbl2f/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-07-02T15:31:57,470   dependency /tmp/pip-build-env-3gnvbl2f/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-02T15:31:57,470   dependency /tmp/pip-build-env-3gnvbl2f/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-07-02T15:31:57,470   dependency /tmp/pip-build-env-3gnvbl2f/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-07-02T15:31:57,470   dependency /tmp/pip-build-env-3gnvbl2f/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
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2024-07-02T15:31:57,472   dependency /tmp/pip-build-env-3gnvbl2f/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
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2024-07-02T15:31:57,474   dependency /tmp/pip-build-env-3gnvbl2f/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-07-02T15:31:57,474   dependency /tmp/pip-build-env-3gnvbl2f/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
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2024-07-02T15:31:57,476   dependency /tmp/pip-build-env-3gnvbl2f/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
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2024-07-02T15:31:57,477   dependency /tmp/pip-build-env-3gnvbl2f/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-07-02T15:31:57,477   dependency /tmp/pip-build-env-3gnvbl2f/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-02T15:31:57,477   dependency /tmp/pip-build-env-3gnvbl2f/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-07-02T15:31:57,477   dependency /tmp/pip-build-env-3gnvbl2f/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-07-02T15:31:57,489   reading manifest file 'moleculekit.egg-info/SOURCES.txt'
2024-07-02T15:31:57,525   reading manifest template 'MANIFEST.in'
2024-07-02T15:31:57,796   no previously-included directories found matching 'moleculekit/test-data'
2024-07-02T15:31:57,798   no previously-included directories found matching 'moleculekit/tests'
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2024-07-02T15:31:57,799   adding license file 'LICENSE'
2024-07-02T15:31:57,818   writing manifest file 'moleculekit.egg-info/SOURCES.txt'
2024-07-02T15:31:59,431   Getting requirements to build wheel: finished with status 'done'
2024-07-02T15:31:59,435   Created temporary directory: /tmp/pip-modern-metadata-gtu_9627
2024-07-02T15:31:59,438   Preparing metadata (pyproject.toml): started
2024-07-02T15:31:59,439   Running command Preparing metadata (pyproject.toml)
2024-07-02T15:32:01,836   running dist_info
2024-07-02T15:32:01,838   creating /tmp/pip-modern-metadata-gtu_9627/moleculekit.egg-info
2024-07-02T15:32:01,843   writing /tmp/pip-modern-metadata-gtu_9627/moleculekit.egg-info/PKG-INFO
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2024-07-02T15:32:01,851   writing top-level names to /tmp/pip-modern-metadata-gtu_9627/moleculekit.egg-info/top_level.txt
2024-07-02T15:32:01,852   writing manifest file '/tmp/pip-modern-metadata-gtu_9627/moleculekit.egg-info/SOURCES.txt'
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2024-07-02T15:32:01,878   dependency /tmp/pip-build-env-3gnvbl2f/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
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2024-07-02T15:32:01,878   dependency /tmp/pip-build-env-3gnvbl2f/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-07-02T15:32:01,878   dependency /tmp/pip-build-env-3gnvbl2f/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-02T15:32:01,878   dependency /tmp/pip-build-env-3gnvbl2f/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-07-02T15:32:01,878   dependency /tmp/pip-build-env-3gnvbl2f/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-02T15:32:01,878   dependency /tmp/pip-build-env-3gnvbl2f/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-07-02T15:32:01,879   dependency /tmp/pip-build-env-3gnvbl2f/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-07-02T15:32:01,879   dependency /tmp/pip-build-env-3gnvbl2f/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
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2024-07-02T15:32:01,879   dependency /tmp/pip-build-env-3gnvbl2f/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-02T15:32:01,879   dependency /tmp/pip-build-env-3gnvbl2f/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-07-02T15:32:01,879   dependency /tmp/pip-build-env-3gnvbl2f/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-07-02T15:32:01,879   dependency /tmp/pip-build-env-3gnvbl2f/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
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2024-07-02T15:32:01,880   dependency /tmp/pip-build-env-3gnvbl2f/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-02T15:32:01,880   dependency /tmp/pip-build-env-3gnvbl2f/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-07-02T15:32:01,880   dependency /tmp/pip-build-env-3gnvbl2f/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-07-02T15:32:01,880   dependency /tmp/pip-build-env-3gnvbl2f/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-02T15:32:01,880   dependency /tmp/pip-build-env-3gnvbl2f/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-07-02T15:32:01,880   dependency /tmp/pip-build-env-3gnvbl2f/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-02T15:32:01,880   dependency /tmp/pip-build-env-3gnvbl2f/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-07-02T15:32:01,880   dependency /tmp/pip-build-env-3gnvbl2f/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-07-02T15:32:01,881   dependency /tmp/pip-build-env-3gnvbl2f/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
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2024-07-02T15:32:01,881   dependency /tmp/pip-build-env-3gnvbl2f/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-07-02T15:32:01,881   dependency /tmp/pip-build-env-3gnvbl2f/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-07-02T15:32:01,881   dependency /tmp/pip-build-env-3gnvbl2f/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
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2024-07-02T15:32:01,882   dependency /tmp/pip-build-env-3gnvbl2f/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-07-02T15:32:01,882   dependency /tmp/pip-build-env-3gnvbl2f/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-02T15:32:01,882   dependency /tmp/pip-build-env-3gnvbl2f/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-07-02T15:32:01,882   dependency /tmp/pip-build-env-3gnvbl2f/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-02T15:32:01,882   dependency /tmp/pip-build-env-3gnvbl2f/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-07-02T15:32:01,882   dependency /tmp/pip-build-env-3gnvbl2f/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-07-02T15:32:01,883   dependency /tmp/pip-build-env-3gnvbl2f/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-02T15:32:01,883   dependency /tmp/pip-build-env-3gnvbl2f/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-07-02T15:32:01,883   dependency /tmp/pip-build-env-3gnvbl2f/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-02T15:32:01,883   dependency /tmp/pip-build-env-3gnvbl2f/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-07-02T15:32:01,883   dependency /tmp/pip-build-env-3gnvbl2f/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-07-02T15:32:01,883   dependency /tmp/pip-build-env-3gnvbl2f/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-02T15:32:01,883   dependency /tmp/pip-build-env-3gnvbl2f/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
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2024-07-02T15:32:01,884   dependency /tmp/pip-build-env-3gnvbl2f/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
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2024-07-02T15:32:01,884   dependency /tmp/pip-build-env-3gnvbl2f/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
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2024-07-02T15:32:01,889   dependency /tmp/pip-build-env-3gnvbl2f/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-02T15:32:01,889   dependency /tmp/pip-build-env-3gnvbl2f/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-07-02T15:32:01,889   dependency /tmp/pip-build-env-3gnvbl2f/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-07-02T15:32:01,895   reading manifest file '/tmp/pip-modern-metadata-gtu_9627/moleculekit.egg-info/SOURCES.txt'
2024-07-02T15:32:01,898   reading manifest template 'MANIFEST.in'
2024-07-02T15:32:02,159   no previously-included directories found matching 'moleculekit/test-data'
2024-07-02T15:32:02,160   no previously-included directories found matching 'moleculekit/tests'
2024-07-02T15:32:02,161   no previously-included directories found matching 'package'
2024-07-02T15:32:02,162   adding license file 'LICENSE'
2024-07-02T15:32:02,175   writing manifest file '/tmp/pip-modern-metadata-gtu_9627/moleculekit.egg-info/SOURCES.txt'
2024-07-02T15:32:02,184   creating '/tmp/pip-modern-metadata-gtu_9627/moleculekit-1.8.36.dist-info'
2024-07-02T15:32:02,374   Preparing metadata (pyproject.toml): finished with status 'done'
2024-07-02T15:32:02,380   Source in /tmp/pip-wheel-lq4k8z0z/moleculekit_707e65088673450c9df338f547e63b43 has version 1.8.36, which satisfies requirement moleculekit==1.8.36 from https://files.pythonhosted.org/packages/cf/5e/035ee54b5606e7489eed8e94571ca014339f5a6959902eff9f40bf4e0d7f/moleculekit-1.8.36.tar.gz
2024-07-02T15:32:02,381   Removed moleculekit==1.8.36 from https://files.pythonhosted.org/packages/cf/5e/035ee54b5606e7489eed8e94571ca014339f5a6959902eff9f40bf4e0d7f/moleculekit-1.8.36.tar.gz from build tracker '/tmp/pip-build-tracker-baife35b'
2024-07-02T15:32:02,387 Created temporary directory: /tmp/pip-unpack-g7fwk3wp
2024-07-02T15:32:02,388 Created temporary directory: /tmp/pip-unpack-2lx5k3y5
2024-07-02T15:32:02,397 Building wheels for collected packages: moleculekit
2024-07-02T15:32:02,401   Created temporary directory: /tmp/pip-wheel-rytzh2c2
2024-07-02T15:32:02,401   Destination directory: /tmp/pip-wheel-rytzh2c2
2024-07-02T15:32:02,403   Building wheel for moleculekit (pyproject.toml): started
2024-07-02T15:32:02,404   Running command Building wheel for moleculekit (pyproject.toml)
2024-07-02T15:32:04,687   running bdist_wheel
2024-07-02T15:32:04,703   running build
2024-07-02T15:32:04,704   running build_py
2024-07-02T15:32:04,712   creating build
2024-07-02T15:32:04,712   creating build/lib.linux-armv7l-cpython-39
2024-07-02T15:32:04,713   creating build/lib.linux-armv7l-cpython-39/moleculekit
2024-07-02T15:32:04,715   copying moleculekit/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2024-07-02T15:32:04,717   copying moleculekit/vmdviewer.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2024-07-02T15:32:04,719   copying moleculekit/rcsb.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2024-07-02T15:32:04,721   copying moleculekit/rdkitintegration.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2024-07-02T15:32:04,723   copying moleculekit/distance.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2024-07-02T15:32:04,725   copying moleculekit/align.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2024-07-02T15:32:04,728   copying moleculekit/viewer.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2024-07-02T15:32:04,730   copying moleculekit/home.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2024-07-02T15:32:04,732   copying moleculekit/_version.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2024-07-02T15:32:04,733   copying moleculekit/pymolgraphics.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2024-07-02T15:32:04,735   copying moleculekit/opm.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2024-07-02T15:32:04,738   copying moleculekit/config.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2024-07-02T15:32:04,740   copying moleculekit/version.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2024-07-02T15:32:04,742   copying moleculekit/bondguesser.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2024-07-02T15:32:04,744   copying moleculekit/readers.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2024-07-02T15:32:04,748   copying moleculekit/writers.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2024-07-02T15:32:04,751   copying moleculekit/molecule.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2024-07-02T15:32:04,755   copying moleculekit/util.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2024-07-02T15:32:04,757   copying moleculekit/vmdgraphics.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2024-07-02T15:32:04,759   copying moleculekit/periodictable.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2024-07-02T15:32:04,761   copying moleculekit/dihedral.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2024-07-02T15:32:04,763   creating build/lib.linux-armv7l-cpython-39/moleculekit/fileformats
2024-07-02T15:32:04,765   copying moleculekit/fileformats/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats
2024-07-02T15:32:04,766   copying moleculekit/fileformats/netcdf.py -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats
2024-07-02T15:32:04,769   copying moleculekit/fileformats/utils.py -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats
2024-07-02T15:32:04,772   creating build/lib.linux-armv7l-cpython-39/moleculekit/projections
2024-07-02T15:32:04,773   copying moleculekit/projections/metrictmscore.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2024-07-02T15:32:04,775   copying moleculekit/projections/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2024-07-02T15:32:04,777   copying moleculekit/projections/metricdihedral.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2024-07-02T15:32:04,779   copying moleculekit/projections/metricrmsd.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2024-07-02T15:32:04,781   copying moleculekit/projections/projection.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2024-07-02T15:32:04,783   copying moleculekit/projections/metriccoordinate.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2024-07-02T15:32:04,785   copying moleculekit/projections/metricsecondarystructure.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2024-07-02T15:32:04,787   copying moleculekit/projections/metricsphericalcoordinate.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2024-07-02T15:32:04,790   copying moleculekit/projections/metricplumed2.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2024-07-02T15:32:04,792   copying moleculekit/projections/metricdistance.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2024-07-02T15:32:04,795   copying moleculekit/projections/metricshell.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2024-07-02T15:32:04,801   copying moleculekit/projections/metricsasa.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2024-07-02T15:32:04,803   copying moleculekit/projections/util.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2024-07-02T15:32:04,806   copying moleculekit/projections/metricgyration.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2024-07-02T15:32:04,808   copying moleculekit/projections/metricfluctuation.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2024-07-02T15:32:04,810   creating build/lib.linux-armv7l-cpython-39/moleculekit/interactions
2024-07-02T15:32:04,811   copying moleculekit/interactions/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/interactions
2024-07-02T15:32:04,813   copying moleculekit/interactions/interactions.py -> build/lib.linux-armv7l-cpython-39/moleculekit/interactions
2024-07-02T15:32:04,816   creating build/lib.linux-armv7l-cpython-39/moleculekit/smallmol
2024-07-02T15:32:04,817   copying moleculekit/smallmol/smallmolcdp.py -> build/lib.linux-armv7l-cpython-39/moleculekit/smallmol
2024-07-02T15:32:04,820   copying moleculekit/smallmol/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/smallmol
2024-07-02T15:32:04,821   copying moleculekit/smallmol/test_smallmol.py -> build/lib.linux-armv7l-cpython-39/moleculekit/smallmol
2024-07-02T15:32:04,823   copying moleculekit/smallmol/test_smallmollib.py -> build/lib.linux-armv7l-cpython-39/moleculekit/smallmol
2024-07-02T15:32:04,825   copying moleculekit/smallmol/smallmollib.py -> build/lib.linux-armv7l-cpython-39/moleculekit/smallmol
2024-07-02T15:32:04,827   copying moleculekit/smallmol/smallmol.py -> build/lib.linux-armv7l-cpython-39/moleculekit/smallmol
2024-07-02T15:32:04,830   copying moleculekit/smallmol/util.py -> build/lib.linux-armv7l-cpython-39/moleculekit/smallmol
2024-07-02T15:32:04,833   creating build/lib.linux-armv7l-cpython-39/moleculekit/pdbx
2024-07-02T15:32:04,834   copying moleculekit/pdbx/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx
2024-07-02T15:32:04,836   creating build/lib.linux-armv7l-cpython-39/moleculekit/tools
2024-07-02T15:32:04,837   copying moleculekit/tools/hhblitsprofile.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2024-07-02T15:32:04,839   copying moleculekit/tools/moleculechecks.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2024-07-02T15:32:04,841   copying moleculekit/tools/voxeldescriptors.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2024-07-02T15:32:04,843   copying moleculekit/tools/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2024-07-02T15:32:04,845   copying moleculekit/tools/sequencestructuralalignment.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2024-07-02T15:32:04,847   copying moleculekit/tools/modelling.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2024-07-02T15:32:04,849   copying moleculekit/tools/docking.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2024-07-02T15:32:04,851   copying moleculekit/tools/graphalignment.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2024-07-02T15:32:04,853   copying moleculekit/tools/preparation.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2024-07-02T15:32:04,856   copying moleculekit/tools/atomtyper.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2024-07-02T15:32:04,858   copying moleculekit/tools/detect.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2024-07-02T15:32:04,861   copying moleculekit/tools/crystalpacking.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2024-07-02T15:32:04,863   copying moleculekit/tools/preparation_customres.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2024-07-02T15:32:04,865   copying moleculekit/tools/autosegment.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2024-07-02T15:32:04,868   creating build/lib.linux-armv7l-cpython-39/moleculekit/ply
2024-07-02T15:32:04,869   copying moleculekit/ply/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/ply
2024-07-02T15:32:04,870   copying moleculekit/ply/yacc.py -> build/lib.linux-armv7l-cpython-39/moleculekit/ply
2024-07-02T15:32:04,875   copying moleculekit/ply/lex.py -> build/lib.linux-armv7l-cpython-39/moleculekit/ply
2024-07-02T15:32:04,878   creating build/lib.linux-armv7l-cpython-39/moleculekit/atomselect
2024-07-02T15:32:04,879   copying moleculekit/atomselect/languageparser.py -> build/lib.linux-armv7l-cpython-39/moleculekit/atomselect
2024-07-02T15:32:04,881   copying moleculekit/atomselect/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/atomselect
2024-07-02T15:32:04,882   copying moleculekit/atomselect/analyze.py -> build/lib.linux-armv7l-cpython-39/moleculekit/atomselect
2024-07-02T15:32:04,884   copying moleculekit/atomselect/atomselect.py -> build/lib.linux-armv7l-cpython-39/moleculekit/atomselect
2024-07-02T15:32:04,887   creating build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/tools
2024-07-02T15:32:04,888   copying moleculekit/smallmol/tools/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/tools
2024-07-02T15:32:04,890   copying moleculekit/smallmol/tools/test_tools.py -> build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/tools
2024-07-02T15:32:04,892   copying moleculekit/smallmol/tools/clustering.py -> build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/tools
2024-07-02T15:32:04,894   copying moleculekit/smallmol/tools/restrainedembed.py -> build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/tools
2024-07-02T15:32:04,896   creating build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/reader
2024-07-02T15:32:04,897   copying moleculekit/pdbx/reader/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/reader
2024-07-02T15:32:04,899   copying moleculekit/pdbx/reader/PdbxReader.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/reader
2024-07-02T15:32:04,901   copying moleculekit/pdbx/reader/PdbxContainers.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/reader
2024-07-02T15:32:04,905   copying moleculekit/pdbx/reader/PdbxParser.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/reader
2024-07-02T15:32:04,908   creating build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/writer
2024-07-02T15:32:04,909   copying moleculekit/pdbx/writer/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/writer
2024-07-02T15:32:04,910   copying moleculekit/pdbx/writer/PdbxWriter.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/writer
2024-07-02T15:32:04,913   creating build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/tests
2024-07-02T15:32:04,914   copying moleculekit/pdbx/tests/PdbxReadWriteTests.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/tests
2024-07-02T15:32:04,916   copying moleculekit/pdbx/tests/PdbxWriterTests.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/tests
2024-07-02T15:32:04,918   copying moleculekit/pdbx/tests/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/tests
2024-07-02T15:32:04,920   copying moleculekit/pdbx/tests/PdbxReaderTests.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/tests
2024-07-02T15:32:04,922   creating build/lib.linux-armv7l-cpython-39/moleculekit/tools/obabel_tools
2024-07-02T15:32:04,923   copying moleculekit/tools/obabel_tools/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools/obabel_tools
2024-07-02T15:32:04,925   copying moleculekit/tools/obabel_tools/obabel_cli.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools/obabel_tools
2024-07-02T15:32:04,927   running egg_info
2024-07-02T15:32:04,932   writing moleculekit.egg-info/PKG-INFO
2024-07-02T15:32:04,935   writing dependency_links to moleculekit.egg-info/dependency_links.txt
2024-07-02T15:32:04,936   writing requirements to moleculekit.egg-info/requires.txt
2024-07-02T15:32:04,937   writing top-level names to moleculekit.egg-info/top_level.txt
2024-07-02T15:32:04,956   dependency /tmp/pip-build-env-3gnvbl2f/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-02T15:32:04,956   dependency /tmp/pip-build-env-3gnvbl2f/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-07-02T15:32:04,956   dependency /tmp/pip-build-env-3gnvbl2f/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-02T15:32:04,957   dependency /tmp/pip-build-env-3gnvbl2f/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-07-02T15:32:04,957   dependency /tmp/pip-build-env-3gnvbl2f/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-07-02T15:32:04,957   dependency /tmp/pip-build-env-3gnvbl2f/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-02T15:32:04,957   dependency /tmp/pip-build-env-3gnvbl2f/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-07-02T15:32:04,957   dependency /tmp/pip-build-env-3gnvbl2f/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-02T15:32:04,957   dependency /tmp/pip-build-env-3gnvbl2f/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-07-02T15:32:04,957   dependency /tmp/pip-build-env-3gnvbl2f/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-07-02T15:32:04,958   dependency /tmp/pip-build-env-3gnvbl2f/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-02T15:32:04,958   dependency /tmp/pip-build-env-3gnvbl2f/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-07-02T15:32:04,958   dependency /tmp/pip-build-env-3gnvbl2f/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-02T15:32:04,958   dependency /tmp/pip-build-env-3gnvbl2f/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-07-02T15:32:04,958   dependency /tmp/pip-build-env-3gnvbl2f/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-07-02T15:32:04,958   dependency /tmp/pip-build-env-3gnvbl2f/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-02T15:32:04,958   dependency /tmp/pip-build-env-3gnvbl2f/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-07-02T15:32:04,958   dependency /tmp/pip-build-env-3gnvbl2f/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-02T15:32:04,959   dependency /tmp/pip-build-env-3gnvbl2f/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-07-02T15:32:04,959   dependency /tmp/pip-build-env-3gnvbl2f/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-07-02T15:32:04,959   dependency /tmp/pip-build-env-3gnvbl2f/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-02T15:32:04,959   dependency /tmp/pip-build-env-3gnvbl2f/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-07-02T15:32:04,959   dependency /tmp/pip-build-env-3gnvbl2f/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-02T15:32:04,959   dependency /tmp/pip-build-env-3gnvbl2f/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-07-02T15:32:04,959   dependency /tmp/pip-build-env-3gnvbl2f/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-07-02T15:32:04,960   dependency /tmp/pip-build-env-3gnvbl2f/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-02T15:32:04,960   dependency /tmp/pip-build-env-3gnvbl2f/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-07-02T15:32:04,960   dependency /tmp/pip-build-env-3gnvbl2f/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-02T15:32:04,960   dependency /tmp/pip-build-env-3gnvbl2f/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-07-02T15:32:04,960   dependency /tmp/pip-build-env-3gnvbl2f/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-07-02T15:32:04,960   dependency /tmp/pip-build-env-3gnvbl2f/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-02T15:32:04,960   dependency /tmp/pip-build-env-3gnvbl2f/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-07-02T15:32:04,960   dependency /tmp/pip-build-env-3gnvbl2f/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-02T15:32:04,961   dependency /tmp/pip-build-env-3gnvbl2f/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-07-02T15:32:04,961   dependency /tmp/pip-build-env-3gnvbl2f/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-07-02T15:32:04,961   dependency /tmp/pip-build-env-3gnvbl2f/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-02T15:32:04,961   dependency /tmp/pip-build-env-3gnvbl2f/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-07-02T15:32:04,961   dependency /tmp/pip-build-env-3gnvbl2f/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-02T15:32:04,961   dependency /tmp/pip-build-env-3gnvbl2f/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-07-02T15:32:04,961   dependency /tmp/pip-build-env-3gnvbl2f/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-07-02T15:32:04,961   dependency /tmp/pip-build-env-3gnvbl2f/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-02T15:32:04,962   dependency /tmp/pip-build-env-3gnvbl2f/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-07-02T15:32:04,962   dependency /tmp/pip-build-env-3gnvbl2f/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-02T15:32:04,962   dependency /tmp/pip-build-env-3gnvbl2f/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-07-02T15:32:04,962   dependency /tmp/pip-build-env-3gnvbl2f/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-07-02T15:32:04,962   dependency /tmp/pip-build-env-3gnvbl2f/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-02T15:32:04,962   dependency /tmp/pip-build-env-3gnvbl2f/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-07-02T15:32:04,962   dependency /tmp/pip-build-env-3gnvbl2f/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-02T15:32:04,962   dependency /tmp/pip-build-env-3gnvbl2f/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-07-02T15:32:04,963   dependency /tmp/pip-build-env-3gnvbl2f/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-07-02T15:32:04,963   dependency /tmp/pip-build-env-3gnvbl2f/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-02T15:32:04,963   dependency /tmp/pip-build-env-3gnvbl2f/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-07-02T15:32:04,963   dependency /tmp/pip-build-env-3gnvbl2f/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-02T15:32:04,963   dependency /tmp/pip-build-env-3gnvbl2f/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-07-02T15:32:04,963   dependency /tmp/pip-build-env-3gnvbl2f/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-07-02T15:32:04,963   dependency /tmp/pip-build-env-3gnvbl2f/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-02T15:32:04,964   dependency /tmp/pip-build-env-3gnvbl2f/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-07-02T15:32:04,964   dependency /tmp/pip-build-env-3gnvbl2f/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-02T15:32:04,964   dependency /tmp/pip-build-env-3gnvbl2f/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-07-02T15:32:04,964   dependency /tmp/pip-build-env-3gnvbl2f/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-07-02T15:32:04,965   dependency /tmp/pip-build-env-3gnvbl2f/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-02T15:32:04,966   dependency /tmp/pip-build-env-3gnvbl2f/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-07-02T15:32:04,966   dependency /tmp/pip-build-env-3gnvbl2f/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-02T15:32:04,966   dependency /tmp/pip-build-env-3gnvbl2f/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-07-02T15:32:04,966   dependency /tmp/pip-build-env-3gnvbl2f/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-07-02T15:32:04,967   dependency /tmp/pip-build-env-3gnvbl2f/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-02T15:32:04,967   dependency /tmp/pip-build-env-3gnvbl2f/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-07-02T15:32:04,967   dependency /tmp/pip-build-env-3gnvbl2f/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-02T15:32:04,967   dependency /tmp/pip-build-env-3gnvbl2f/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-07-02T15:32:04,967   dependency /tmp/pip-build-env-3gnvbl2f/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-07-02T15:32:04,968   dependency /tmp/pip-build-env-3gnvbl2f/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-02T15:32:04,968   dependency /tmp/pip-build-env-3gnvbl2f/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-07-02T15:32:04,968   dependency /tmp/pip-build-env-3gnvbl2f/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-02T15:32:04,968   dependency /tmp/pip-build-env-3gnvbl2f/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-07-02T15:32:04,969   dependency /tmp/pip-build-env-3gnvbl2f/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-07-02T15:32:04,975   reading manifest file 'moleculekit.egg-info/SOURCES.txt'
2024-07-02T15:32:04,984   reading manifest template 'MANIFEST.in'
2024-07-02T15:32:05,226   no previously-included directories found matching 'moleculekit/test-data'
2024-07-02T15:32:05,227   no previously-included directories found matching 'moleculekit/tests'
2024-07-02T15:32:05,228   no previously-included directories found matching 'package'
2024-07-02T15:32:05,228   adding license file 'LICENSE'
2024-07-02T15:32:05,247   writing manifest file 'moleculekit.egg-info/SOURCES.txt'
2024-07-02T15:32:05,259   /tmp/pip-build-env-3gnvbl2f/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:215: _Warning: Package 'moleculekit.atomselect_utils' is absent from the `packages` configuration.
2024-07-02T15:32:05,259   !!

2024-07-02T15:32:05,259           ********************************************************************************
2024-07-02T15:32:05,259           ############################
2024-07-02T15:32:05,259           # Package would be ignored #
2024-07-02T15:32:05,259           ############################
2024-07-02T15:32:05,260           Python recognizes 'moleculekit.atomselect_utils' as an importable package[^1],
2024-07-02T15:32:05,260           but it is absent from setuptools' `packages` configuration.

2024-07-02T15:32:05,260           This leads to an ambiguous overall configuration. If you want to distribute this
2024-07-02T15:32:05,260           package, please make sure that 'moleculekit.atomselect_utils' is explicitly added
2024-07-02T15:32:05,260           to the `packages` configuration field.

2024-07-02T15:32:05,260           Alternatively, you can also rely on setuptools' discovery methods
2024-07-02T15:32:05,260           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-07-02T15:32:05,261           instead of `find_packages(...)`/`find:`).

2024-07-02T15:32:05,261           You can read more about "package discovery" on setuptools documentation page:

2024-07-02T15:32:05,261           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-07-02T15:32:05,261           If you don't want 'moleculekit.atomselect_utils' to be distributed and are
2024-07-02T15:32:05,261           already explicitly excluding 'moleculekit.atomselect_utils' via
2024-07-02T15:32:05,262           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-07-02T15:32:05,262           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-07-02T15:32:05,262           combination with a more fine grained `package-data` configuration.

2024-07-02T15:32:05,262           You can read more about "package data files" on setuptools documentation page:

2024-07-02T15:32:05,262           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-07-02T15:32:05,263           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-07-02T15:32:05,263                 even if it does not contain any `.py` files.
2024-07-02T15:32:05,263                 On the other hand, currently there is no concept of package data
2024-07-02T15:32:05,263                 directory, all directories are treated like packages.
2024-07-02T15:32:05,263           ********************************************************************************

2024-07-02T15:32:05,263   !!
2024-07-02T15:32:05,263     check.warn(importable)
2024-07-02T15:32:05,264   /tmp/pip-build-env-3gnvbl2f/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:215: _Warning: Package 'moleculekit.bondguesser_utils' is absent from the `packages` configuration.
2024-07-02T15:32:05,264   !!

2024-07-02T15:32:05,264           ********************************************************************************
2024-07-02T15:32:05,264           ############################
2024-07-02T15:32:05,264           # Package would be ignored #
2024-07-02T15:32:05,264           ############################
2024-07-02T15:32:05,265           Python recognizes 'moleculekit.bondguesser_utils' as an importable package[^1],
2024-07-02T15:32:05,265           but it is absent from setuptools' `packages` configuration.

2024-07-02T15:32:05,265           This leads to an ambiguous overall configuration. If you want to distribute this
2024-07-02T15:32:05,265           package, please make sure that 'moleculekit.bondguesser_utils' is explicitly added
2024-07-02T15:32:05,265           to the `packages` configuration field.

2024-07-02T15:32:05,265           Alternatively, you can also rely on setuptools' discovery methods
2024-07-02T15:32:05,265           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-07-02T15:32:05,266           instead of `find_packages(...)`/`find:`).

2024-07-02T15:32:05,266           You can read more about "package discovery" on setuptools documentation page:

2024-07-02T15:32:05,266           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-07-02T15:32:05,266           If you don't want 'moleculekit.bondguesser_utils' to be distributed and are
2024-07-02T15:32:05,266           already explicitly excluding 'moleculekit.bondguesser_utils' via
2024-07-02T15:32:05,266           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-07-02T15:32:05,267           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-07-02T15:32:05,267           combination with a more fine grained `package-data` configuration.

2024-07-02T15:32:05,267           You can read more about "package data files" on setuptools documentation page:

2024-07-02T15:32:05,267           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-07-02T15:32:05,267           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-07-02T15:32:05,268                 even if it does not contain any `.py` files.
2024-07-02T15:32:05,268                 On the other hand, currently there is no concept of package data
2024-07-02T15:32:05,268                 directory, all directories are treated like packages.
2024-07-02T15:32:05,268           ********************************************************************************

2024-07-02T15:32:05,268   !!
2024-07-02T15:32:05,268     check.warn(importable)
2024-07-02T15:32:05,268   /tmp/pip-build-env-3gnvbl2f/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:215: _Warning: Package 'moleculekit.cython_utils' is absent from the `packages` configuration.
2024-07-02T15:32:05,268   !!

2024-07-02T15:32:05,269           ********************************************************************************
2024-07-02T15:32:05,269           ############################
2024-07-02T15:32:05,269           # Package would be ignored #
2024-07-02T15:32:05,269           ############################
2024-07-02T15:32:05,269           Python recognizes 'moleculekit.cython_utils' as an importable package[^1],
2024-07-02T15:32:05,269           but it is absent from setuptools' `packages` configuration.

2024-07-02T15:32:05,269           This leads to an ambiguous overall configuration. If you want to distribute this
2024-07-02T15:32:05,270           package, please make sure that 'moleculekit.cython_utils' is explicitly added
2024-07-02T15:32:05,270           to the `packages` configuration field.

2024-07-02T15:32:05,270           Alternatively, you can also rely on setuptools' discovery methods
2024-07-02T15:32:05,270           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-07-02T15:32:05,270           instead of `find_packages(...)`/`find:`).

2024-07-02T15:32:05,270           You can read more about "package discovery" on setuptools documentation page:

2024-07-02T15:32:05,271           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-07-02T15:32:05,271           If you don't want 'moleculekit.cython_utils' to be distributed and are
2024-07-02T15:32:05,271           already explicitly excluding 'moleculekit.cython_utils' via
2024-07-02T15:32:05,271           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-07-02T15:32:05,271           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-07-02T15:32:05,271           combination with a more fine grained `package-data` configuration.

2024-07-02T15:32:05,271           You can read more about "package data files" on setuptools documentation page:

2024-07-02T15:32:05,272           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-07-02T15:32:05,272           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-07-02T15:32:05,272                 even if it does not contain any `.py` files.
2024-07-02T15:32:05,272                 On the other hand, currently there is no concept of package data
2024-07-02T15:32:05,272                 directory, all directories are treated like packages.
2024-07-02T15:32:05,272           ********************************************************************************

2024-07-02T15:32:05,273   !!
2024-07-02T15:32:05,273     check.warn(importable)
2024-07-02T15:32:05,273   /tmp/pip-build-env-3gnvbl2f/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:215: _Warning: Package 'moleculekit.distance_utils' is absent from the `packages` configuration.
2024-07-02T15:32:05,273   !!

2024-07-02T15:32:05,273           ********************************************************************************
2024-07-02T15:32:05,273           ############################
2024-07-02T15:32:05,273           # Package would be ignored #
2024-07-02T15:32:05,273           ############################
2024-07-02T15:32:05,274           Python recognizes 'moleculekit.distance_utils' as an importable package[^1],
2024-07-02T15:32:05,274           but it is absent from setuptools' `packages` configuration.

2024-07-02T15:32:05,274           This leads to an ambiguous overall configuration. If you want to distribute this
2024-07-02T15:32:05,274           package, please make sure that 'moleculekit.distance_utils' is explicitly added
2024-07-02T15:32:05,274           to the `packages` configuration field.

2024-07-02T15:32:05,274           Alternatively, you can also rely on setuptools' discovery methods
2024-07-02T15:32:05,274           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-07-02T15:32:05,274           instead of `find_packages(...)`/`find:`).

2024-07-02T15:32:05,275           You can read more about "package discovery" on setuptools documentation page:

2024-07-02T15:32:05,275           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-07-02T15:32:05,275           If you don't want 'moleculekit.distance_utils' to be distributed and are
2024-07-02T15:32:05,275           already explicitly excluding 'moleculekit.distance_utils' via
2024-07-02T15:32:05,275           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-07-02T15:32:05,275           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-07-02T15:32:05,276           combination with a more fine grained `package-data` configuration.

2024-07-02T15:32:05,276           You can read more about "package data files" on setuptools documentation page:

2024-07-02T15:32:05,276           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-07-02T15:32:05,276           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-07-02T15:32:05,276                 even if it does not contain any `.py` files.
2024-07-02T15:32:05,276                 On the other hand, currently there is no concept of package data
2024-07-02T15:32:05,277                 directory, all directories are treated like packages.
2024-07-02T15:32:05,277           ********************************************************************************

2024-07-02T15:32:05,277   !!
2024-07-02T15:32:05,277     check.warn(importable)
2024-07-02T15:32:05,277   /tmp/pip-build-env-3gnvbl2f/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:215: _Warning: Package 'moleculekit.fileformats.binpos' is absent from the `packages` configuration.
2024-07-02T15:32:05,277   !!

2024-07-02T15:32:05,277           ********************************************************************************
2024-07-02T15:32:05,278           ############################
2024-07-02T15:32:05,278           # Package would be ignored #
2024-07-02T15:32:05,278           ############################
2024-07-02T15:32:05,278           Python recognizes 'moleculekit.fileformats.binpos' as an importable package[^1],
2024-07-02T15:32:05,278           but it is absent from setuptools' `packages` configuration.

2024-07-02T15:32:05,278           This leads to an ambiguous overall configuration. If you want to distribute this
2024-07-02T15:32:05,278           package, please make sure that 'moleculekit.fileformats.binpos' is explicitly added
2024-07-02T15:32:05,278           to the `packages` configuration field.

2024-07-02T15:32:05,279           Alternatively, you can also rely on setuptools' discovery methods
2024-07-02T15:32:05,279           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-07-02T15:32:05,279           instead of `find_packages(...)`/`find:`).

2024-07-02T15:32:05,279           You can read more about "package discovery" on setuptools documentation page:

2024-07-02T15:32:05,279           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-07-02T15:32:05,279           If you don't want 'moleculekit.fileformats.binpos' to be distributed and are
2024-07-02T15:32:05,280           already explicitly excluding 'moleculekit.fileformats.binpos' via
2024-07-02T15:32:05,280           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-07-02T15:32:05,280           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-07-02T15:32:05,280           combination with a more fine grained `package-data` configuration.

2024-07-02T15:32:05,280           You can read more about "package data files" on setuptools documentation page:

2024-07-02T15:32:05,280           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-07-02T15:32:05,281           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-07-02T15:32:05,281                 even if it does not contain any `.py` files.
2024-07-02T15:32:05,281                 On the other hand, currently there is no concept of package data
2024-07-02T15:32:05,281                 directory, all directories are treated like packages.
2024-07-02T15:32:05,281           ********************************************************************************

2024-07-02T15:32:05,281   !!
2024-07-02T15:32:05,282     check.warn(importable)
2024-07-02T15:32:05,282   /tmp/pip-build-env-3gnvbl2f/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:215: _Warning: Package 'moleculekit.fileformats.binpos.include' is absent from the `packages` configuration.
2024-07-02T15:32:05,282   !!

2024-07-02T15:32:05,282           ********************************************************************************
2024-07-02T15:32:05,282           ############################
2024-07-02T15:32:05,282           # Package would be ignored #
2024-07-02T15:32:05,282           ############################
2024-07-02T15:32:05,282           Python recognizes 'moleculekit.fileformats.binpos.include' as an importable package[^1],
2024-07-02T15:32:05,283           but it is absent from setuptools' `packages` configuration.

2024-07-02T15:32:05,283           This leads to an ambiguous overall configuration. If you want to distribute this
2024-07-02T15:32:05,283           package, please make sure that 'moleculekit.fileformats.binpos.include' is explicitly added
2024-07-02T15:32:05,283           to the `packages` configuration field.

2024-07-02T15:32:05,283           Alternatively, you can also rely on setuptools' discovery methods
2024-07-02T15:32:05,283           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-07-02T15:32:05,283           instead of `find_packages(...)`/`find:`).

2024-07-02T15:32:05,284           You can read more about "package discovery" on setuptools documentation page:

2024-07-02T15:32:05,284           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-07-02T15:32:05,284           If you don't want 'moleculekit.fileformats.binpos.include' to be distributed and are
2024-07-02T15:32:05,284           already explicitly excluding 'moleculekit.fileformats.binpos.include' via
2024-07-02T15:32:05,284           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-07-02T15:32:05,284           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-07-02T15:32:05,285           combination with a more fine grained `package-data` configuration.

2024-07-02T15:32:05,285           You can read more about "package data files" on setuptools documentation page:

2024-07-02T15:32:05,285           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-07-02T15:32:05,285           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-07-02T15:32:05,285                 even if it does not contain any `.py` files.
2024-07-02T15:32:05,286                 On the other hand, currently there is no concept of package data
2024-07-02T15:32:05,286                 directory, all directories are treated like packages.
2024-07-02T15:32:05,286           ********************************************************************************

2024-07-02T15:32:05,286   !!
2024-07-02T15:32:05,286     check.warn(importable)
2024-07-02T15:32:05,286   /tmp/pip-build-env-3gnvbl2f/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:215: _Warning: Package 'moleculekit.fileformats.binpos.src' is absent from the `packages` configuration.
2024-07-02T15:32:05,286   !!

2024-07-02T15:32:05,287           ********************************************************************************
2024-07-02T15:32:05,287           ############################
2024-07-02T15:32:05,287           # Package would be ignored #
2024-07-02T15:32:05,287           ############################
2024-07-02T15:32:05,287           Python recognizes 'moleculekit.fileformats.binpos.src' as an importable package[^1],
2024-07-02T15:32:05,287           but it is absent from setuptools' `packages` configuration.

2024-07-02T15:32:05,287           This leads to an ambiguous overall configuration. If you want to distribute this
2024-07-02T15:32:05,287           package, please make sure that 'moleculekit.fileformats.binpos.src' is explicitly added
2024-07-02T15:32:05,288           to the `packages` configuration field.

2024-07-02T15:32:05,288           Alternatively, you can also rely on setuptools' discovery methods
2024-07-02T15:32:05,288           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-07-02T15:32:05,288           instead of `find_packages(...)`/`find:`).

2024-07-02T15:32:05,288           You can read more about "package discovery" on setuptools documentation page:

2024-07-02T15:32:05,288           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-07-02T15:32:05,289           If you don't want 'moleculekit.fileformats.binpos.src' to be distributed and are
2024-07-02T15:32:05,289           already explicitly excluding 'moleculekit.fileformats.binpos.src' via
2024-07-02T15:32:05,289           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-07-02T15:32:05,289           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-07-02T15:32:05,289           combination with a more fine grained `package-data` configuration.

2024-07-02T15:32:05,289           You can read more about "package data files" on setuptools documentation page:

2024-07-02T15:32:05,289           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-07-02T15:32:05,290           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-07-02T15:32:05,290                 even if it does not contain any `.py` files.
2024-07-02T15:32:05,290                 On the other hand, currently there is no concept of package data
2024-07-02T15:32:05,290                 directory, all directories are treated like packages.
2024-07-02T15:32:05,290           ********************************************************************************

2024-07-02T15:32:05,290   !!
2024-07-02T15:32:05,291     check.warn(importable)
2024-07-02T15:32:05,291   /tmp/pip-build-env-3gnvbl2f/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:215: _Warning: Package 'moleculekit.fileformats.dcd' is absent from the `packages` configuration.
2024-07-02T15:32:05,291   !!

2024-07-02T15:32:05,291           ********************************************************************************
2024-07-02T15:32:05,291           ############################
2024-07-02T15:32:05,291           # Package would be ignored #
2024-07-02T15:32:05,291           ############################
2024-07-02T15:32:05,291           Python recognizes 'moleculekit.fileformats.dcd' as an importable package[^1],
2024-07-02T15:32:05,292           but it is absent from setuptools' `packages` configuration.

2024-07-02T15:32:05,292           This leads to an ambiguous overall configuration. If you want to distribute this
2024-07-02T15:32:05,292           package, please make sure that 'moleculekit.fileformats.dcd' is explicitly added
2024-07-02T15:32:05,292           to the `packages` configuration field.

2024-07-02T15:32:05,292           Alternatively, you can also rely on setuptools' discovery methods
2024-07-02T15:32:05,292           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-07-02T15:32:05,292           instead of `find_packages(...)`/`find:`).

2024-07-02T15:32:05,293           You can read more about "package discovery" on setuptools documentation page:

2024-07-02T15:32:05,293           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-07-02T15:32:05,293           If you don't want 'moleculekit.fileformats.dcd' to be distributed and are
2024-07-02T15:32:05,293           already explicitly excluding 'moleculekit.fileformats.dcd' via
2024-07-02T15:32:05,293           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-07-02T15:32:05,293           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-07-02T15:32:05,294           combination with a more fine grained `package-data` configuration.

2024-07-02T15:32:05,294           You can read more about "package data files" on setuptools documentation page:

2024-07-02T15:32:05,294           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-07-02T15:32:05,294           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-07-02T15:32:05,294                 even if it does not contain any `.py` files.
2024-07-02T15:32:05,295                 On the other hand, currently there is no concept of package data
2024-07-02T15:32:05,295                 directory, all directories are treated like packages.
2024-07-02T15:32:05,295           ********************************************************************************

2024-07-02T15:32:05,295   !!
2024-07-02T15:32:05,295     check.warn(importable)
2024-07-02T15:32:05,295   /tmp/pip-build-env-3gnvbl2f/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:215: _Warning: Package 'moleculekit.fileformats.dcd.include' is absent from the `packages` configuration.
2024-07-02T15:32:05,295   !!

2024-07-02T15:32:05,295           ********************************************************************************
2024-07-02T15:32:05,296           ############################
2024-07-02T15:32:05,296           # Package would be ignored #
2024-07-02T15:32:05,296           ############################
2024-07-02T15:32:05,296           Python recognizes 'moleculekit.fileformats.dcd.include' as an importable package[^1],
2024-07-02T15:32:05,296           but it is absent from setuptools' `packages` configuration.

2024-07-02T15:32:05,296           This leads to an ambiguous overall configuration. If you want to distribute this
2024-07-02T15:32:05,296           package, please make sure that 'moleculekit.fileformats.dcd.include' is explicitly added
2024-07-02T15:32:05,296           to the `packages` configuration field.

2024-07-02T15:32:05,297           Alternatively, you can also rely on setuptools' discovery methods
2024-07-02T15:32:05,297           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-07-02T15:32:05,297           instead of `find_packages(...)`/`find:`).

2024-07-02T15:32:05,297           You can read more about "package discovery" on setuptools documentation page:

2024-07-02T15:32:05,297           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-07-02T15:32:05,298           If you don't want 'moleculekit.fileformats.dcd.include' to be distributed and are
2024-07-02T15:32:05,298           already explicitly excluding 'moleculekit.fileformats.dcd.include' via
2024-07-02T15:32:05,298           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-07-02T15:32:05,298           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-07-02T15:32:05,298           combination with a more fine grained `package-data` configuration.

2024-07-02T15:32:05,298           You can read more about "package data files" on setuptools documentation page:

2024-07-02T15:32:05,299           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-07-02T15:32:05,299           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-07-02T15:32:05,299                 even if it does not contain any `.py` files.
2024-07-02T15:32:05,299                 On the other hand, currently there is no concept of package data
2024-07-02T15:32:05,299                 directory, all directories are treated like packages.
2024-07-02T15:32:05,299           ********************************************************************************

2024-07-02T15:32:05,300   !!
2024-07-02T15:32:05,300     check.warn(importable)
2024-07-02T15:32:05,300   /tmp/pip-build-env-3gnvbl2f/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:215: _Warning: Package 'moleculekit.fileformats.dcd.src' is absent from the `packages` configuration.
2024-07-02T15:32:05,300   !!

2024-07-02T15:32:05,300           ********************************************************************************
2024-07-02T15:32:05,300           ############################
2024-07-02T15:32:05,300           # Package would be ignored #
2024-07-02T15:32:05,301           ############################
2024-07-02T15:32:05,301           Python recognizes 'moleculekit.fileformats.dcd.src' as an importable package[^1],
2024-07-02T15:32:05,301           but it is absent from setuptools' `packages` configuration.

2024-07-02T15:32:05,301           This leads to an ambiguous overall configuration. If you want to distribute this
2024-07-02T15:32:05,301           package, please make sure that 'moleculekit.fileformats.dcd.src' is explicitly added
2024-07-02T15:32:05,301           to the `packages` configuration field.

2024-07-02T15:32:05,301           Alternatively, you can also rely on setuptools' discovery methods
2024-07-02T15:32:05,302           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-07-02T15:32:05,302           instead of `find_packages(...)`/`find:`).

2024-07-02T15:32:05,302           You can read more about "package discovery" on setuptools documentation page:

2024-07-02T15:32:05,302           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-07-02T15:32:05,302           If you don't want 'moleculekit.fileformats.dcd.src' to be distributed and are
2024-07-02T15:32:05,302           already explicitly excluding 'moleculekit.fileformats.dcd.src' via
2024-07-02T15:32:05,303           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-07-02T15:32:05,303           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-07-02T15:32:05,303           combination with a more fine grained `package-data` configuration.

2024-07-02T15:32:05,303           You can read more about "package data files" on setuptools documentation page:

2024-07-02T15:32:05,303           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-07-02T15:32:05,304           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-07-02T15:32:05,304                 even if it does not contain any `.py` files.
2024-07-02T15:32:05,304                 On the other hand, currently there is no concept of package data
2024-07-02T15:32:05,304                 directory, all directories are treated like packages.
2024-07-02T15:32:05,304           ********************************************************************************

2024-07-02T15:32:05,304   !!
2024-07-02T15:32:05,304     check.warn(importable)
2024-07-02T15:32:05,304   /tmp/pip-build-env-3gnvbl2f/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:215: _Warning: Package 'moleculekit.fileformats.xtc' is absent from the `packages` configuration.
2024-07-02T15:32:05,305   !!

2024-07-02T15:32:05,305           ********************************************************************************
2024-07-02T15:32:05,305           ############################
2024-07-02T15:32:05,305           # Package would be ignored #
2024-07-02T15:32:05,305           ############################
2024-07-02T15:32:05,305           Python recognizes 'moleculekit.fileformats.xtc' as an importable package[^1],
2024-07-02T15:32:05,305           but it is absent from setuptools' `packages` configuration.

2024-07-02T15:32:05,305           This leads to an ambiguous overall configuration. If you want to distribute this
2024-07-02T15:32:05,306           package, please make sure that 'moleculekit.fileformats.xtc' is explicitly added
2024-07-02T15:32:05,306           to the `packages` configuration field.

2024-07-02T15:32:05,306           Alternatively, you can also rely on setuptools' discovery methods
2024-07-02T15:32:05,306           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-07-02T15:32:05,306           instead of `find_packages(...)`/`find:`).

2024-07-02T15:32:05,306           You can read more about "package discovery" on setuptools documentation page:

2024-07-02T15:32:05,307           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-07-02T15:32:05,307           If you don't want 'moleculekit.fileformats.xtc' to be distributed and are
2024-07-02T15:32:05,307           already explicitly excluding 'moleculekit.fileformats.xtc' via
2024-07-02T15:32:05,307           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-07-02T15:32:05,307           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-07-02T15:32:05,307           combination with a more fine grained `package-data` configuration.

2024-07-02T15:32:05,307           You can read more about "package data files" on setuptools documentation page:

2024-07-02T15:32:05,308           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-07-02T15:32:05,308           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-07-02T15:32:05,308                 even if it does not contain any `.py` files.
2024-07-02T15:32:05,308                 On the other hand, currently there is no concept of package data
2024-07-02T15:32:05,308                 directory, all directories are treated like packages.
2024-07-02T15:32:05,308           ********************************************************************************

2024-07-02T15:32:05,309   !!
2024-07-02T15:32:05,309     check.warn(importable)
2024-07-02T15:32:05,309   /tmp/pip-build-env-3gnvbl2f/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:215: _Warning: Package 'moleculekit.fileformats.xtc.include' is absent from the `packages` configuration.
2024-07-02T15:32:05,309   !!

2024-07-02T15:32:05,309           ********************************************************************************
2024-07-02T15:32:05,309           ############################
2024-07-02T15:32:05,309           # Package would be ignored #
2024-07-02T15:32:05,310           ############################
2024-07-02T15:32:05,310           Python recognizes 'moleculekit.fileformats.xtc.include' as an importable package[^1],
2024-07-02T15:32:05,310           but it is absent from setuptools' `packages` configuration.

2024-07-02T15:32:05,310           This leads to an ambiguous overall configuration. If you want to distribute this
2024-07-02T15:32:05,310           package, please make sure that 'moleculekit.fileformats.xtc.include' is explicitly added
2024-07-02T15:32:05,310           to the `packages` configuration field.

2024-07-02T15:32:05,310           Alternatively, you can also rely on setuptools' discovery methods
2024-07-02T15:32:05,310           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-07-02T15:32:05,311           instead of `find_packages(...)`/`find:`).

2024-07-02T15:32:05,311           You can read more about "package discovery" on setuptools documentation page:

2024-07-02T15:32:05,311           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-07-02T15:32:05,311           If you don't want 'moleculekit.fileformats.xtc.include' to be distributed and are
2024-07-02T15:32:05,311           already explicitly excluding 'moleculekit.fileformats.xtc.include' via
2024-07-02T15:32:05,311           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-07-02T15:32:05,312           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-07-02T15:32:05,312           combination with a more fine grained `package-data` configuration.

2024-07-02T15:32:05,312           You can read more about "package data files" on setuptools documentation page:

2024-07-02T15:32:05,312           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-07-02T15:32:05,312           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-07-02T15:32:05,313                 even if it does not contain any `.py` files.
2024-07-02T15:32:05,313                 On the other hand, currently there is no concept of package data
2024-07-02T15:32:05,313                 directory, all directories are treated like packages.
2024-07-02T15:32:05,313           ********************************************************************************

2024-07-02T15:32:05,313   !!
2024-07-02T15:32:05,313     check.warn(importable)
2024-07-02T15:32:05,313   /tmp/pip-build-env-3gnvbl2f/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:215: _Warning: Package 'moleculekit.fileformats.xtc.src' is absent from the `packages` configuration.
2024-07-02T15:32:05,313   !!

2024-07-02T15:32:05,314           ********************************************************************************
2024-07-02T15:32:05,314           ############################
2024-07-02T15:32:05,314           # Package would be ignored #
2024-07-02T15:32:05,314           ############################
2024-07-02T15:32:05,314           Python recognizes 'moleculekit.fileformats.xtc.src' as an importable package[^1],
2024-07-02T15:32:05,314           but it is absent from setuptools' `packages` configuration.

2024-07-02T15:32:05,314           This leads to an ambiguous overall configuration. If you want to distribute this
2024-07-02T15:32:05,314           package, please make sure that 'moleculekit.fileformats.xtc.src' is explicitly added
2024-07-02T15:32:05,315           to the `packages` configuration field.

2024-07-02T15:32:05,315           Alternatively, you can also rely on setuptools' discovery methods
2024-07-02T15:32:05,315           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-07-02T15:32:05,315           instead of `find_packages(...)`/`find:`).

2024-07-02T15:32:05,315           You can read more about "package discovery" on setuptools documentation page:

2024-07-02T15:32:05,316           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-07-02T15:32:05,316           If you don't want 'moleculekit.fileformats.xtc.src' to be distributed and are
2024-07-02T15:32:05,316           already explicitly excluding 'moleculekit.fileformats.xtc.src' via
2024-07-02T15:32:05,316           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-07-02T15:32:05,316           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-07-02T15:32:05,316           combination with a more fine grained `package-data` configuration.

2024-07-02T15:32:05,316           You can read more about "package data files" on setuptools documentation page:

2024-07-02T15:32:05,317           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-07-02T15:32:05,317           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-07-02T15:32:05,317                 even if it does not contain any `.py` files.
2024-07-02T15:32:05,317                 On the other hand, currently there is no concept of package data
2024-07-02T15:32:05,317                 directory, all directories are treated like packages.
2024-07-02T15:32:05,317           ********************************************************************************

2024-07-02T15:32:05,318   !!
2024-07-02T15:32:05,318     check.warn(importable)
2024-07-02T15:32:05,318   /tmp/pip-build-env-3gnvbl2f/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:215: _Warning: Package 'moleculekit.interactions.cationpi' is absent from the `packages` configuration.
2024-07-02T15:32:05,318   !!

2024-07-02T15:32:05,318           ********************************************************************************
2024-07-02T15:32:05,318           ############################
2024-07-02T15:32:05,319           # Package would be ignored #
2024-07-02T15:32:05,319           ############################
2024-07-02T15:32:05,319           Python recognizes 'moleculekit.interactions.cationpi' as an importable package[^1],
2024-07-02T15:32:05,319           but it is absent from setuptools' `packages` configuration.

2024-07-02T15:32:05,319           This leads to an ambiguous overall configuration. If you want to distribute this
2024-07-02T15:32:05,319           package, please make sure that 'moleculekit.interactions.cationpi' is explicitly added
2024-07-02T15:32:05,319           to the `packages` configuration field.

2024-07-02T15:32:05,320           Alternatively, you can also rely on setuptools' discovery methods
2024-07-02T15:32:05,320           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-07-02T15:32:05,320           instead of `find_packages(...)`/`find:`).

2024-07-02T15:32:05,320           You can read more about "package discovery" on setuptools documentation page:

2024-07-02T15:32:05,320           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-07-02T15:32:05,321           If you don't want 'moleculekit.interactions.cationpi' to be distributed and are
2024-07-02T15:32:05,321           already explicitly excluding 'moleculekit.interactions.cationpi' via
2024-07-02T15:32:05,321           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-07-02T15:32:05,321           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-07-02T15:32:05,321           combination with a more fine grained `package-data` configuration.

2024-07-02T15:32:05,321           You can read more about "package data files" on setuptools documentation page:

2024-07-02T15:32:05,322           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-07-02T15:32:05,322           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-07-02T15:32:05,322                 even if it does not contain any `.py` files.
2024-07-02T15:32:05,322                 On the other hand, currently there is no concept of package data
2024-07-02T15:32:05,322                 directory, all directories are treated like packages.
2024-07-02T15:32:05,323           ********************************************************************************

2024-07-02T15:32:05,323   !!
2024-07-02T15:32:05,323     check.warn(importable)
2024-07-02T15:32:05,323   /tmp/pip-build-env-3gnvbl2f/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:215: _Warning: Package 'moleculekit.interactions.hbonds' is absent from the `packages` configuration.
2024-07-02T15:32:05,323   !!

2024-07-02T15:32:05,323           ********************************************************************************
2024-07-02T15:32:05,324           ############################
2024-07-02T15:32:05,324           # Package would be ignored #
2024-07-02T15:32:05,324           ############################
2024-07-02T15:32:05,324           Python recognizes 'moleculekit.interactions.hbonds' as an importable package[^1],
2024-07-02T15:32:05,324           but it is absent from setuptools' `packages` configuration.

2024-07-02T15:32:05,324           This leads to an ambiguous overall configuration. If you want to distribute this
2024-07-02T15:32:05,325           package, please make sure that 'moleculekit.interactions.hbonds' is explicitly added
2024-07-02T15:32:05,325           to the `packages` configuration field.

2024-07-02T15:32:05,325           Alternatively, you can also rely on setuptools' discovery methods
2024-07-02T15:32:05,325           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-07-02T15:32:05,325           instead of `find_packages(...)`/`find:`).

2024-07-02T15:32:05,325           You can read more about "package discovery" on setuptools documentation page:

2024-07-02T15:32:05,326           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-07-02T15:32:05,326           If you don't want 'moleculekit.interactions.hbonds' to be distributed and are
2024-07-02T15:32:05,326           already explicitly excluding 'moleculekit.interactions.hbonds' via
2024-07-02T15:32:05,326           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-07-02T15:32:05,326           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-07-02T15:32:05,326           combination with a more fine grained `package-data` configuration.

2024-07-02T15:32:05,327           You can read more about "package data files" on setuptools documentation page:

2024-07-02T15:32:05,327           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-07-02T15:32:05,327           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-07-02T15:32:05,327                 even if it does not contain any `.py` files.
2024-07-02T15:32:05,327                 On the other hand, currently there is no concept of package data
2024-07-02T15:32:05,328                 directory, all directories are treated like packages.
2024-07-02T15:32:05,328           ********************************************************************************

2024-07-02T15:32:05,328   !!
2024-07-02T15:32:05,328     check.warn(importable)
2024-07-02T15:32:05,328   /tmp/pip-build-env-3gnvbl2f/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:215: _Warning: Package 'moleculekit.interactions.pipi' is absent from the `packages` configuration.
2024-07-02T15:32:05,328   !!

2024-07-02T15:32:05,329           ********************************************************************************
2024-07-02T15:32:05,329           ############################
2024-07-02T15:32:05,329           # Package would be ignored #
2024-07-02T15:32:05,329           ############################
2024-07-02T15:32:05,329           Python recognizes 'moleculekit.interactions.pipi' as an importable package[^1],
2024-07-02T15:32:05,329           but it is absent from setuptools' `packages` configuration.

2024-07-02T15:32:05,329           This leads to an ambiguous overall configuration. If you want to distribute this
2024-07-02T15:32:05,330           package, please make sure that 'moleculekit.interactions.pipi' is explicitly added
2024-07-02T15:32:05,330           to the `packages` configuration field.

2024-07-02T15:32:05,330           Alternatively, you can also rely on setuptools' discovery methods
2024-07-02T15:32:05,330           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-07-02T15:32:05,330           instead of `find_packages(...)`/`find:`).

2024-07-02T15:32:05,330           You can read more about "package discovery" on setuptools documentation page:

2024-07-02T15:32:05,331           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-07-02T15:32:05,331           If you don't want 'moleculekit.interactions.pipi' to be distributed and are
2024-07-02T15:32:05,331           already explicitly excluding 'moleculekit.interactions.pipi' via
2024-07-02T15:32:05,331           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-07-02T15:32:05,331           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-07-02T15:32:05,331           combination with a more fine grained `package-data` configuration.

2024-07-02T15:32:05,332           You can read more about "package data files" on setuptools documentation page:

2024-07-02T15:32:05,332           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-07-02T15:32:05,332           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-07-02T15:32:05,332                 even if it does not contain any `.py` files.
2024-07-02T15:32:05,332                 On the other hand, currently there is no concept of package data
2024-07-02T15:32:05,332                 directory, all directories are treated like packages.
2024-07-02T15:32:05,333           ********************************************************************************

2024-07-02T15:32:05,333   !!
2024-07-02T15:32:05,333     check.warn(importable)
2024-07-02T15:32:05,333   /tmp/pip-build-env-3gnvbl2f/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:215: _Warning: Package 'moleculekit.interactions.sigmahole' is absent from the `packages` configuration.
2024-07-02T15:32:05,333   !!

2024-07-02T15:32:05,333           ********************************************************************************
2024-07-02T15:32:05,334           ############################
2024-07-02T15:32:05,334           # Package would be ignored #
2024-07-02T15:32:05,334           ############################
2024-07-02T15:32:05,334           Python recognizes 'moleculekit.interactions.sigmahole' as an importable package[^1],
2024-07-02T15:32:05,334           but it is absent from setuptools' `packages` configuration.

2024-07-02T15:32:05,334           This leads to an ambiguous overall configuration. If you want to distribute this
2024-07-02T15:32:05,334           package, please make sure that 'moleculekit.interactions.sigmahole' is explicitly added
2024-07-02T15:32:05,335           to the `packages` configuration field.

2024-07-02T15:32:05,335           Alternatively, you can also rely on setuptools' discovery methods
2024-07-02T15:32:05,335           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-07-02T15:32:05,335           instead of `find_packages(...)`/`find:`).

2024-07-02T15:32:05,335           You can read more about "package discovery" on setuptools documentation page:

2024-07-02T15:32:05,336           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-07-02T15:32:05,336           If you don't want 'moleculekit.interactions.sigmahole' to be distributed and are
2024-07-02T15:32:05,336           already explicitly excluding 'moleculekit.interactions.sigmahole' via
2024-07-02T15:32:05,336           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-07-02T15:32:05,336           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-07-02T15:32:05,336           combination with a more fine grained `package-data` configuration.

2024-07-02T15:32:05,337           You can read more about "package data files" on setuptools documentation page:

2024-07-02T15:32:05,337           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-07-02T15:32:05,337           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-07-02T15:32:05,337                 even if it does not contain any `.py` files.
2024-07-02T15:32:05,338                 On the other hand, currently there is no concept of package data
2024-07-02T15:32:05,338                 directory, all directories are treated like packages.
2024-07-02T15:32:05,338           ********************************************************************************

2024-07-02T15:32:05,338   !!
2024-07-02T15:32:05,338     check.warn(importable)
2024-07-02T15:32:05,338   /tmp/pip-build-env-3gnvbl2f/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:215: _Warning: Package 'moleculekit.occupancy_utils' is absent from the `packages` configuration.
2024-07-02T15:32:05,339   !!

2024-07-02T15:32:05,339           ********************************************************************************
2024-07-02T15:32:05,339           ############################
2024-07-02T15:32:05,339           # Package would be ignored #
2024-07-02T15:32:05,339           ############################
2024-07-02T15:32:05,339           Python recognizes 'moleculekit.occupancy_utils' as an importable package[^1],
2024-07-02T15:32:05,339           but it is absent from setuptools' `packages` configuration.

2024-07-02T15:32:05,340           This leads to an ambiguous overall configuration. If you want to distribute this
2024-07-02T15:32:05,340           package, please make sure that 'moleculekit.occupancy_utils' is explicitly added
2024-07-02T15:32:05,340           to the `packages` configuration field.

2024-07-02T15:32:05,340           Alternatively, you can also rely on setuptools' discovery methods
2024-07-02T15:32:05,340           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-07-02T15:32:05,341           instead of `find_packages(...)`/`find:`).

2024-07-02T15:32:05,341           You can read more about "package discovery" on setuptools documentation page:

2024-07-02T15:32:05,341           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-07-02T15:32:05,341           If you don't want 'moleculekit.occupancy_utils' to be distributed and are
2024-07-02T15:32:05,342           already explicitly excluding 'moleculekit.occupancy_utils' via
2024-07-02T15:32:05,342           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-07-02T15:32:05,342           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-07-02T15:32:05,342           combination with a more fine grained `package-data` configuration.

2024-07-02T15:32:05,342           You can read more about "package data files" on setuptools documentation page:

2024-07-02T15:32:05,342           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-07-02T15:32:05,343           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-07-02T15:32:05,343                 even if it does not contain any `.py` files.
2024-07-02T15:32:05,343                 On the other hand, currently there is no concept of package data
2024-07-02T15:32:05,343                 directory, all directories are treated like packages.
2024-07-02T15:32:05,343           ********************************************************************************

2024-07-02T15:32:05,344   !!
2024-07-02T15:32:05,344     check.warn(importable)
2024-07-02T15:32:05,344   /tmp/pip-build-env-3gnvbl2f/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:215: _Warning: Package 'moleculekit.share' is absent from the `packages` configuration.
2024-07-02T15:32:05,344   !!

2024-07-02T15:32:05,344           ********************************************************************************
2024-07-02T15:32:05,344           ############################
2024-07-02T15:32:05,345           # Package would be ignored #
2024-07-02T15:32:05,345           ############################
2024-07-02T15:32:05,345           Python recognizes 'moleculekit.share' as an importable package[^1],
2024-07-02T15:32:05,345           but it is absent from setuptools' `packages` configuration.

2024-07-02T15:32:05,345           This leads to an ambiguous overall configuration. If you want to distribute this
2024-07-02T15:32:05,345           package, please make sure that 'moleculekit.share' is explicitly added
2024-07-02T15:32:05,346           to the `packages` configuration field.

2024-07-02T15:32:05,346           Alternatively, you can also rely on setuptools' discovery methods
2024-07-02T15:32:05,346           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-07-02T15:32:05,346           instead of `find_packages(...)`/`find:`).

2024-07-02T15:32:05,346           You can read more about "package discovery" on setuptools documentation page:

2024-07-02T15:32:05,347           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-07-02T15:32:05,347           If you don't want 'moleculekit.share' to be distributed and are
2024-07-02T15:32:05,347           already explicitly excluding 'moleculekit.share' via
2024-07-02T15:32:05,347           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-07-02T15:32:05,347           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-07-02T15:32:05,347           combination with a more fine grained `package-data` configuration.

2024-07-02T15:32:05,348           You can read more about "package data files" on setuptools documentation page:

2024-07-02T15:32:05,348           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-07-02T15:32:05,348           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-07-02T15:32:05,348                 even if it does not contain any `.py` files.
2024-07-02T15:32:05,349                 On the other hand, currently there is no concept of package data
2024-07-02T15:32:05,349                 directory, all directories are treated like packages.
2024-07-02T15:32:05,349           ********************************************************************************

2024-07-02T15:32:05,349   !!
2024-07-02T15:32:05,349     check.warn(importable)
2024-07-02T15:32:05,349   /tmp/pip-build-env-3gnvbl2f/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:215: _Warning: Package 'moleculekit.share.atomselect' is absent from the `packages` configuration.
2024-07-02T15:32:05,349   !!

2024-07-02T15:32:05,350           ********************************************************************************
2024-07-02T15:32:05,350           ############################
2024-07-02T15:32:05,350           # Package would be ignored #
2024-07-02T15:32:05,350           ############################
2024-07-02T15:32:05,350           Python recognizes 'moleculekit.share.atomselect' as an importable package[^1],
2024-07-02T15:32:05,350           but it is absent from setuptools' `packages` configuration.

2024-07-02T15:32:05,351           This leads to an ambiguous overall configuration. If you want to distribute this
2024-07-02T15:32:05,351           package, please make sure that 'moleculekit.share.atomselect' is explicitly added
2024-07-02T15:32:05,351           to the `packages` configuration field.

2024-07-02T15:32:05,351           Alternatively, you can also rely on setuptools' discovery methods
2024-07-02T15:32:05,351           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-07-02T15:32:05,351           instead of `find_packages(...)`/`find:`).

2024-07-02T15:32:05,352           You can read more about "package discovery" on setuptools documentation page:

2024-07-02T15:32:05,352           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-07-02T15:32:05,352           If you don't want 'moleculekit.share.atomselect' to be distributed and are
2024-07-02T15:32:05,352           already explicitly excluding 'moleculekit.share.atomselect' via
2024-07-02T15:32:05,353           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-07-02T15:32:05,353           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-07-02T15:32:05,353           combination with a more fine grained `package-data` configuration.

2024-07-02T15:32:05,353           You can read more about "package data files" on setuptools documentation page:

2024-07-02T15:32:05,353           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-07-02T15:32:05,354           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-07-02T15:32:05,354                 even if it does not contain any `.py` files.
2024-07-02T15:32:05,354                 On the other hand, currently there is no concept of package data
2024-07-02T15:32:05,354                 directory, all directories are treated like packages.
2024-07-02T15:32:05,354           ********************************************************************************

2024-07-02T15:32:05,354   !!
2024-07-02T15:32:05,355     check.warn(importable)
2024-07-02T15:32:05,355   /tmp/pip-build-env-3gnvbl2f/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:215: _Warning: Package 'moleculekit.share.pdb2pqr.residues' is absent from the `packages` configuration.
2024-07-02T15:32:05,355   !!

2024-07-02T15:32:05,355           ********************************************************************************
2024-07-02T15:32:05,355           ############################
2024-07-02T15:32:05,356           # Package would be ignored #
2024-07-02T15:32:05,356           ############################
2024-07-02T15:32:05,357           Python recognizes 'moleculekit.share.pdb2pqr.residues' as an importable package[^1],
2024-07-02T15:32:05,357           but it is absent from setuptools' `packages` configuration.

2024-07-02T15:32:05,358           This leads to an ambiguous overall configuration. If you want to distribute this
2024-07-02T15:32:05,359           package, please make sure that 'moleculekit.share.pdb2pqr.residues' is explicitly added
2024-07-02T15:32:05,359           to the `packages` configuration field.

2024-07-02T15:32:05,359           Alternatively, you can also rely on setuptools' discovery methods
2024-07-02T15:32:05,360           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-07-02T15:32:05,360           instead of `find_packages(...)`/`find:`).

2024-07-02T15:32:05,360           You can read more about "package discovery" on setuptools documentation page:

2024-07-02T15:32:05,360           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-07-02T15:32:05,360           If you don't want 'moleculekit.share.pdb2pqr.residues' to be distributed and are
2024-07-02T15:32:05,361           already explicitly excluding 'moleculekit.share.pdb2pqr.residues' via
2024-07-02T15:32:05,361           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-07-02T15:32:05,361           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-07-02T15:32:05,361           combination with a more fine grained `package-data` configuration.

2024-07-02T15:32:05,361           You can read more about "package data files" on setuptools documentation page:

2024-07-02T15:32:05,361           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-07-02T15:32:05,362           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-07-02T15:32:05,362                 even if it does not contain any `.py` files.
2024-07-02T15:32:05,362                 On the other hand, currently there is no concept of package data
2024-07-02T15:32:05,362                 directory, all directories are treated like packages.
2024-07-02T15:32:05,362           ********************************************************************************

2024-07-02T15:32:05,363   !!
2024-07-02T15:32:05,363     check.warn(importable)
2024-07-02T15:32:05,363   /tmp/pip-build-env-3gnvbl2f/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:215: _Warning: Package 'moleculekit.tmalign' is absent from the `packages` configuration.
2024-07-02T15:32:05,363   !!

2024-07-02T15:32:05,363           ********************************************************************************
2024-07-02T15:32:05,364           ############################
2024-07-02T15:32:05,364           # Package would be ignored #
2024-07-02T15:32:05,364           ############################
2024-07-02T15:32:05,364           Python recognizes 'moleculekit.tmalign' as an importable package[^1],
2024-07-02T15:32:05,364           but it is absent from setuptools' `packages` configuration.

2024-07-02T15:32:05,365           This leads to an ambiguous overall configuration. If you want to distribute this
2024-07-02T15:32:05,365           package, please make sure that 'moleculekit.tmalign' is explicitly added
2024-07-02T15:32:05,365           to the `packages` configuration field.

2024-07-02T15:32:05,365           Alternatively, you can also rely on setuptools' discovery methods
2024-07-02T15:32:05,365           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-07-02T15:32:05,365           instead of `find_packages(...)`/`find:`).

2024-07-02T15:32:05,366           You can read more about "package discovery" on setuptools documentation page:

2024-07-02T15:32:05,366           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-07-02T15:32:05,366           If you don't want 'moleculekit.tmalign' to be distributed and are
2024-07-02T15:32:05,366           already explicitly excluding 'moleculekit.tmalign' via
2024-07-02T15:32:05,367           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-07-02T15:32:05,367           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-07-02T15:32:05,367           combination with a more fine grained `package-data` configuration.

2024-07-02T15:32:05,367           You can read more about "package data files" on setuptools documentation page:

2024-07-02T15:32:05,367           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-07-02T15:32:05,368           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-07-02T15:32:05,368                 even if it does not contain any `.py` files.
2024-07-02T15:32:05,368                 On the other hand, currently there is no concept of package data
2024-07-02T15:32:05,368                 directory, all directories are treated like packages.
2024-07-02T15:32:05,368           ********************************************************************************

2024-07-02T15:32:05,368   !!
2024-07-02T15:32:05,368     check.warn(importable)
2024-07-02T15:32:05,369   /tmp/pip-build-env-3gnvbl2f/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:215: _Warning: Package 'moleculekit.tmalign.include' is absent from the `packages` configuration.
2024-07-02T15:32:05,369   !!

2024-07-02T15:32:05,369           ********************************************************************************
2024-07-02T15:32:05,369           ############################
2024-07-02T15:32:05,369           # Package would be ignored #
2024-07-02T15:32:05,369           ############################
2024-07-02T15:32:05,369           Python recognizes 'moleculekit.tmalign.include' as an importable package[^1],
2024-07-02T15:32:05,370           but it is absent from setuptools' `packages` configuration.

2024-07-02T15:32:05,370           This leads to an ambiguous overall configuration. If you want to distribute this
2024-07-02T15:32:05,370           package, please make sure that 'moleculekit.tmalign.include' is explicitly added
2024-07-02T15:32:05,370           to the `packages` configuration field.

2024-07-02T15:32:05,370           Alternatively, you can also rely on setuptools' discovery methods
2024-07-02T15:32:05,370           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-07-02T15:32:05,370           instead of `find_packages(...)`/`find:`).

2024-07-02T15:32:05,371           You can read more about "package discovery" on setuptools documentation page:

2024-07-02T15:32:05,371           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-07-02T15:32:05,371           If you don't want 'moleculekit.tmalign.include' to be distributed and are
2024-07-02T15:32:05,371           already explicitly excluding 'moleculekit.tmalign.include' via
2024-07-02T15:32:05,371           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-07-02T15:32:05,373           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-07-02T15:32:05,373           combination with a more fine grained `package-data` configuration.

2024-07-02T15:32:05,374           You can read more about "package data files" on setuptools documentation page:

2024-07-02T15:32:05,374           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-07-02T15:32:05,374           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-07-02T15:32:05,375                 even if it does not contain any `.py` files.
2024-07-02T15:32:05,375                 On the other hand, currently there is no concept of package data
2024-07-02T15:32:05,375                 directory, all directories are treated like packages.
2024-07-02T15:32:05,375           ********************************************************************************

2024-07-02T15:32:05,375   !!
2024-07-02T15:32:05,375     check.warn(importable)
2024-07-02T15:32:05,376   /tmp/pip-build-env-3gnvbl2f/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:215: _Warning: Package 'moleculekit.tmalign.src' is absent from the `packages` configuration.
2024-07-02T15:32:05,376   !!

2024-07-02T15:32:05,376           ********************************************************************************
2024-07-02T15:32:05,376           ############################
2024-07-02T15:32:05,376           # Package would be ignored #
2024-07-02T15:32:05,376           ############################
2024-07-02T15:32:05,377           Python recognizes 'moleculekit.tmalign.src' as an importable package[^1],
2024-07-02T15:32:05,377           but it is absent from setuptools' `packages` configuration.

2024-07-02T15:32:05,377           This leads to an ambiguous overall configuration. If you want to distribute this
2024-07-02T15:32:05,377           package, please make sure that 'moleculekit.tmalign.src' is explicitly added
2024-07-02T15:32:05,377           to the `packages` configuration field.

2024-07-02T15:32:05,377           Alternatively, you can also rely on setuptools' discovery methods
2024-07-02T15:32:05,377           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-07-02T15:32:05,378           instead of `find_packages(...)`/`find:`).

2024-07-02T15:32:05,378           You can read more about "package discovery" on setuptools documentation page:

2024-07-02T15:32:05,378           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-07-02T15:32:05,378           If you don't want 'moleculekit.tmalign.src' to be distributed and are
2024-07-02T15:32:05,378           already explicitly excluding 'moleculekit.tmalign.src' via
2024-07-02T15:32:05,378           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-07-02T15:32:05,379           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-07-02T15:32:05,379           combination with a more fine grained `package-data` configuration.

2024-07-02T15:32:05,379           You can read more about "package data files" on setuptools documentation page:

2024-07-02T15:32:05,379           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-07-02T15:32:05,380           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-07-02T15:32:05,380                 even if it does not contain any `.py` files.
2024-07-02T15:32:05,380                 On the other hand, currently there is no concept of package data
2024-07-02T15:32:05,380                 directory, all directories are treated like packages.
2024-07-02T15:32:05,380           ********************************************************************************

2024-07-02T15:32:05,380   !!
2024-07-02T15:32:05,380     check.warn(importable)
2024-07-02T15:32:05,380   /tmp/pip-build-env-3gnvbl2f/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:215: _Warning: Package 'moleculekit.wrapping' is absent from the `packages` configuration.
2024-07-02T15:32:05,381   !!

2024-07-02T15:32:05,381           ********************************************************************************
2024-07-02T15:32:05,381           ############################
2024-07-02T15:32:05,381           # Package would be ignored #
2024-07-02T15:32:05,381           ############################
2024-07-02T15:32:05,381           Python recognizes 'moleculekit.wrapping' as an importable package[^1],
2024-07-02T15:32:05,382           but it is absent from setuptools' `packages` configuration.

2024-07-02T15:32:05,382           This leads to an ambiguous overall configuration. If you want to distribute this
2024-07-02T15:32:05,382           package, please make sure that 'moleculekit.wrapping' is explicitly added
2024-07-02T15:32:05,382           to the `packages` configuration field.

2024-07-02T15:32:05,382           Alternatively, you can also rely on setuptools' discovery methods
2024-07-02T15:32:05,382           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-07-02T15:32:05,382           instead of `find_packages(...)`/`find:`).

2024-07-02T15:32:05,383           You can read more about "package discovery" on setuptools documentation page:

2024-07-02T15:32:05,383           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-07-02T15:32:05,383           If you don't want 'moleculekit.wrapping' to be distributed and are
2024-07-02T15:32:05,383           already explicitly excluding 'moleculekit.wrapping' via
2024-07-02T15:32:05,383           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-07-02T15:32:05,383           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-07-02T15:32:05,384           combination with a more fine grained `package-data` configuration.

2024-07-02T15:32:05,384           You can read more about "package data files" on setuptools documentation page:

2024-07-02T15:32:05,384           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-07-02T15:32:05,384           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-07-02T15:32:05,385                 even if it does not contain any `.py` files.
2024-07-02T15:32:05,385                 On the other hand, currently there is no concept of package data
2024-07-02T15:32:05,385                 directory, all directories are treated like packages.
2024-07-02T15:32:05,385           ********************************************************************************

2024-07-02T15:32:05,385   !!
2024-07-02T15:32:05,385     check.warn(importable)
2024-07-02T15:32:05,385   copying moleculekit/logging.ini -> build/lib.linux-armv7l-cpython-39/moleculekit
2024-07-02T15:32:05,385   copying moleculekit/vmd_wrapper -> build/lib.linux-armv7l-cpython-39/moleculekit
2024-07-02T15:32:05,386   creating build/lib.linux-armv7l-cpython-39/moleculekit/atomselect_utils
2024-07-02T15:32:05,386   copying moleculekit/atomselect_utils/atomselect_utils.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/atomselect_utils
2024-07-02T15:32:05,386   copying moleculekit/atomselect_utils/atomselect_utils.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/atomselect_utils
2024-07-02T15:32:05,386   creating build/lib.linux-armv7l-cpython-39/moleculekit/bondguesser_utils
2024-07-02T15:32:05,386   copying moleculekit/bondguesser_utils/bondguesser_utils.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/bondguesser_utils
2024-07-02T15:32:05,389   copying moleculekit/bondguesser_utils/bondguesser_utils.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/bondguesser_utils
2024-07-02T15:32:05,391   creating build/lib.linux-armv7l-cpython-39/moleculekit/cython_utils
2024-07-02T15:32:05,392   copying moleculekit/cython_utils/cython_utils.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/cython_utils
2024-07-02T15:32:05,412   copying moleculekit/cython_utils/cython_utils.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/cython_utils
2024-07-02T15:32:05,414   creating build/lib.linux-armv7l-cpython-39/moleculekit/distance_utils
2024-07-02T15:32:05,415   copying moleculekit/distance_utils/distance_utils.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/distance_utils
2024-07-02T15:32:05,438   copying moleculekit/distance_utils/distance_utils.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/distance_utils
2024-07-02T15:32:05,440   creating build/lib.linux-armv7l-cpython-39/moleculekit/occupancy_utils
2024-07-02T15:32:05,441   copying moleculekit/occupancy_utils/occupancy_utils.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/occupancy_utils
2024-07-02T15:32:05,460   copying moleculekit/occupancy_utils/occupancy_utils.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/occupancy_utils
2024-07-02T15:32:05,462   creating build/lib.linux-armv7l-cpython-39/moleculekit/share
2024-07-02T15:32:05,463   copying moleculekit/share/ALA.cif -> build/lib.linux-armv7l-cpython-39/moleculekit/share
2024-07-02T15:32:05,465   copying moleculekit/share/backbone.cif -> build/lib.linux-armv7l-cpython-39/moleculekit/share
2024-07-02T15:32:05,467   copying moleculekit/share/opm_sequences.json -> build/lib.linux-armv7l-cpython-39/moleculekit/share
2024-07-02T15:32:05,672   creating build/lib.linux-armv7l-cpython-39/moleculekit/share/atomselect
2024-07-02T15:32:05,673   copying moleculekit/share/atomselect/atomselect.json -> build/lib.linux-armv7l-cpython-39/moleculekit/share/atomselect
2024-07-02T15:32:05,675   creating build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr
2024-07-02T15:32:05,676   creating build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-02T15:32:05,677   copying moleculekit/share/pdb2pqr/residues/.gitkeep -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-02T15:32:05,678   copying moleculekit/share/pdb2pqr/residues/004.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-02T15:32:05,680   copying moleculekit/share/pdb2pqr/residues/004.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-02T15:32:05,682   copying moleculekit/share/pdb2pqr/residues/03Y.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-02T15:32:05,684   copying moleculekit/share/pdb2pqr/residues/03Y.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-02T15:32:05,686   copying moleculekit/share/pdb2pqr/residues/0A1.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-02T15:32:05,688   copying moleculekit/share/pdb2pqr/residues/0A1.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-02T15:32:05,690   copying moleculekit/share/pdb2pqr/residues/0AF.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-02T15:32:05,692   copying moleculekit/share/pdb2pqr/residues/0AF.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-02T15:32:05,694   copying moleculekit/share/pdb2pqr/residues/0BN.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-02T15:32:05,696   copying moleculekit/share/pdb2pqr/residues/0BN.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-02T15:32:05,698   copying moleculekit/share/pdb2pqr/residues/1MH.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-02T15:32:05,700   copying moleculekit/share/pdb2pqr/residues/1MH.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-02T15:32:05,703   copying moleculekit/share/pdb2pqr/residues/2AS.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-02T15:32:05,705   copying moleculekit/share/pdb2pqr/residues/2AS.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-02T15:32:05,707   copying moleculekit/share/pdb2pqr/residues/2GX.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-02T15:32:05,709   copying moleculekit/share/pdb2pqr/residues/2GX.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-02T15:32:05,712   copying moleculekit/share/pdb2pqr/residues/2ML.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-02T15:32:05,714   copying moleculekit/share/pdb2pqr/residues/2ML.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-02T15:32:05,716   copying moleculekit/share/pdb2pqr/residues/2MR.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-02T15:32:05,718   copying moleculekit/share/pdb2pqr/residues/2MR.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-02T15:32:05,721   copying moleculekit/share/pdb2pqr/residues/4IN.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-02T15:32:05,723   copying moleculekit/share/pdb2pqr/residues/4IN.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-02T15:32:05,725   copying moleculekit/share/pdb2pqr/residues/4PH.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-02T15:32:05,727   copying moleculekit/share/pdb2pqr/residues/4PH.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-02T15:32:05,730   copying moleculekit/share/pdb2pqr/residues/4PQ.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-02T15:32:05,732   copying moleculekit/share/pdb2pqr/residues/4PQ.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-02T15:32:05,734   copying moleculekit/share/pdb2pqr/residues/5JP.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-02T15:32:05,737   copying moleculekit/share/pdb2pqr/residues/5JP.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-02T15:32:05,740   copying moleculekit/share/pdb2pqr/residues/AA4.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-02T15:32:05,743   copying moleculekit/share/pdb2pqr/residues/AA4.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-02T15:32:05,746   copying moleculekit/share/pdb2pqr/residues/ABA.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-02T15:32:05,748   copying moleculekit/share/pdb2pqr/residues/ABA.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-02T15:32:05,751   copying moleculekit/share/pdb2pqr/residues/AHP.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-02T15:32:05,754   copying moleculekit/share/pdb2pqr/residues/AHP.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-02T15:32:05,757   copying moleculekit/share/pdb2pqr/residues/ALC.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-02T15:32:05,760   copying moleculekit/share/pdb2pqr/residues/ALC.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-02T15:32:05,763   copying moleculekit/share/pdb2pqr/residues/ALN.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-02T15:32:05,766   copying moleculekit/share/pdb2pqr/residues/ALN.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-02T15:32:05,769   copying moleculekit/share/pdb2pqr/residues/ALY.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-02T15:32:05,771   copying moleculekit/share/pdb2pqr/residues/ALY.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-02T15:32:05,774   copying moleculekit/share/pdb2pqr/residues/APD.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-02T15:32:05,777   copying moleculekit/share/pdb2pqr/residues/APD.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-02T15:32:05,780   copying moleculekit/share/pdb2pqr/residues/BB8.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-02T15:32:05,783   copying moleculekit/share/pdb2pqr/residues/BB8.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-02T15:32:05,785   copying moleculekit/share/pdb2pqr/residues/BCS.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-02T15:32:05,788   copying moleculekit/share/pdb2pqr/residues/BCS.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-02T15:32:05,791   copying moleculekit/share/pdb2pqr/residues/BTK.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-02T15:32:05,794   copying moleculekit/share/pdb2pqr/residues/BTK.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-02T15:32:05,798   copying moleculekit/share/pdb2pqr/residues/CCS.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-02T15:32:05,800   copying moleculekit/share/pdb2pqr/residues/CCS.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-02T15:32:05,803   copying moleculekit/share/pdb2pqr/residues/CGU.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-02T15:32:05,806   copying moleculekit/share/pdb2pqr/residues/CGU.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-02T15:32:05,809   copying moleculekit/share/pdb2pqr/residues/CSA.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-02T15:32:05,812   copying moleculekit/share/pdb2pqr/residues/CSA.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-02T15:32:05,815   copying moleculekit/share/pdb2pqr/residues/CSO.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-02T15:32:05,817   copying moleculekit/share/pdb2pqr/residues/CSO.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-02T15:32:05,821   copying moleculekit/share/pdb2pqr/residues/CSP.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-02T15:32:05,824   copying moleculekit/share/pdb2pqr/residues/CSP.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-02T15:32:05,827   copying moleculekit/share/pdb2pqr/residues/CSS.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-02T15:32:05,830   copying moleculekit/share/pdb2pqr/residues/CSS.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-02T15:32:05,833   copying moleculekit/share/pdb2pqr/residues/D4P.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-02T15:32:05,835   copying moleculekit/share/pdb2pqr/residues/D4P.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-02T15:32:05,838   copying moleculekit/share/pdb2pqr/residues/DA2.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-02T15:32:05,840   copying moleculekit/share/pdb2pqr/residues/DA2.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-02T15:32:05,842   copying moleculekit/share/pdb2pqr/residues/DAB.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-02T15:32:05,844   copying moleculekit/share/pdb2pqr/residues/DAB.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-02T15:32:05,846   copying moleculekit/share/pdb2pqr/residues/DAH.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-02T15:32:05,849   copying moleculekit/share/pdb2pqr/residues/DAH.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-02T15:32:05,851   copying moleculekit/share/pdb2pqr/residues/DPP.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-02T15:32:05,853   copying moleculekit/share/pdb2pqr/residues/DPP.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-02T15:32:05,855   copying moleculekit/share/pdb2pqr/residues/ESC.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-02T15:32:05,857   copying moleculekit/share/pdb2pqr/residues/ESC.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-02T15:32:05,860   copying moleculekit/share/pdb2pqr/residues/FGL.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-02T15:32:05,862   copying moleculekit/share/pdb2pqr/residues/FGL.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-02T15:32:05,864   copying moleculekit/share/pdb2pqr/residues/GHG.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-02T15:32:05,866   copying moleculekit/share/pdb2pqr/residues/GHG.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-02T15:32:05,868   copying moleculekit/share/pdb2pqr/residues/GME.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-02T15:32:05,870   copying moleculekit/share/pdb2pqr/residues/GME.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-02T15:32:05,873   copying moleculekit/share/pdb2pqr/residues/GNC.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-02T15:32:05,875   copying moleculekit/share/pdb2pqr/residues/GNC.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-02T15:32:05,877   copying moleculekit/share/pdb2pqr/residues/HHK.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-02T15:32:05,879   copying moleculekit/share/pdb2pqr/residues/HHK.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-02T15:32:05,882   copying moleculekit/share/pdb2pqr/residues/HLU.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-02T15:32:05,884   copying moleculekit/share/pdb2pqr/residues/HLU.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-02T15:32:05,886   copying moleculekit/share/pdb2pqr/residues/HLX.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-02T15:32:05,888   copying moleculekit/share/pdb2pqr/residues/HLX.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-02T15:32:05,890   copying moleculekit/share/pdb2pqr/residues/HOX.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-02T15:32:05,892   copying moleculekit/share/pdb2pqr/residues/HOX.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-02T15:32:05,894   copying moleculekit/share/pdb2pqr/residues/HPE.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-02T15:32:05,895   copying moleculekit/share/pdb2pqr/residues/HPE.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-02T15:32:05,897   copying moleculekit/share/pdb2pqr/residues/HQA.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-02T15:32:05,899   copying moleculekit/share/pdb2pqr/residues/HQA.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-02T15:32:05,901   copying moleculekit/share/pdb2pqr/residues/HTR.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-02T15:32:05,903   copying moleculekit/share/pdb2pqr/residues/HTR.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-02T15:32:05,905   copying moleculekit/share/pdb2pqr/residues/HYP.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-02T15:32:05,907   copying moleculekit/share/pdb2pqr/residues/HYP.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-02T15:32:05,909   copying moleculekit/share/pdb2pqr/residues/I2M.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-02T15:32:05,911   copying moleculekit/share/pdb2pqr/residues/I2M.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-02T15:32:05,913   copying moleculekit/share/pdb2pqr/residues/IGL.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-02T15:32:05,916   copying moleculekit/share/pdb2pqr/residues/IGL.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-02T15:32:05,918   copying moleculekit/share/pdb2pqr/residues/IIL.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-02T15:32:05,919   copying moleculekit/share/pdb2pqr/residues/IIL.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-02T15:32:05,922   copying moleculekit/share/pdb2pqr/residues/IML.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-02T15:32:05,923   copying moleculekit/share/pdb2pqr/residues/IML.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-02T15:32:05,925   copying moleculekit/share/pdb2pqr/residues/KYN.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-02T15:32:05,927   copying moleculekit/share/pdb2pqr/residues/KYN.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-02T15:32:05,929   copying moleculekit/share/pdb2pqr/residues/LME.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-02T15:32:05,931   copying moleculekit/share/pdb2pqr/residues/LME.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-02T15:32:05,933   copying moleculekit/share/pdb2pqr/residues/LMQ.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-02T15:32:05,934   copying moleculekit/share/pdb2pqr/residues/LMQ.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-02T15:32:05,936   copying moleculekit/share/pdb2pqr/residues/LYZ.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-02T15:32:05,938   copying moleculekit/share/pdb2pqr/residues/LYZ.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-02T15:32:05,940   copying moleculekit/share/pdb2pqr/residues/M3L.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-02T15:32:05,942   copying moleculekit/share/pdb2pqr/residues/M3L.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-02T15:32:05,944   copying moleculekit/share/pdb2pqr/residues/ME0.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-02T15:32:05,946   copying moleculekit/share/pdb2pqr/residues/ME0.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-02T15:32:05,948   copying moleculekit/share/pdb2pqr/residues/MEA.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-02T15:32:05,950   copying moleculekit/share/pdb2pqr/residues/MEA.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-02T15:32:05,952   copying moleculekit/share/pdb2pqr/residues/MEN.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-02T15:32:05,954   copying moleculekit/share/pdb2pqr/residues/MEN.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-02T15:32:05,956   copying moleculekit/share/pdb2pqr/residues/MEQ.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-02T15:32:05,958   copying moleculekit/share/pdb2pqr/residues/MEQ.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-02T15:32:05,960   copying moleculekit/share/pdb2pqr/residues/MLE.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-02T15:32:05,962   copying moleculekit/share/pdb2pqr/residues/MLE.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-02T15:32:05,964   copying moleculekit/share/pdb2pqr/residues/MLY.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-02T15:32:05,966   copying moleculekit/share/pdb2pqr/residues/MLY.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-02T15:32:05,968   copying moleculekit/share/pdb2pqr/residues/MLZ.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-02T15:32:05,970   copying moleculekit/share/pdb2pqr/residues/MLZ.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-02T15:32:05,972   copying moleculekit/share/pdb2pqr/residues/MME.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-02T15:32:05,974   copying moleculekit/share/pdb2pqr/residues/MME.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-02T15:32:05,976   copying moleculekit/share/pdb2pqr/residues/MMO.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-02T15:32:05,978   copying moleculekit/share/pdb2pqr/residues/MMO.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-02T15:32:05,980   copying moleculekit/share/pdb2pqr/residues/MVA.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-02T15:32:05,981   copying moleculekit/share/pdb2pqr/residues/MVA.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-02T15:32:05,983   copying moleculekit/share/pdb2pqr/residues/NAL.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-02T15:32:05,985   copying moleculekit/share/pdb2pqr/residues/NAL.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-02T15:32:05,987   copying moleculekit/share/pdb2pqr/residues/NCY.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-02T15:32:05,989   copying moleculekit/share/pdb2pqr/residues/NCY.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-02T15:32:05,991   copying moleculekit/share/pdb2pqr/residues/NLE.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-02T15:32:05,993   copying moleculekit/share/pdb2pqr/residues/NLE.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-02T15:32:05,995   copying moleculekit/share/pdb2pqr/residues/NVA.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-02T15:32:05,996   copying moleculekit/share/pdb2pqr/residues/NVA.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-02T15:32:05,998   copying moleculekit/share/pdb2pqr/residues/NZC.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-02T15:32:06,000   copying moleculekit/share/pdb2pqr/residues/NZC.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-02T15:32:06,002   copying moleculekit/share/pdb2pqr/residues/OCY.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-02T15:32:06,004   copying moleculekit/share/pdb2pqr/residues/OCY.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-02T15:32:06,006   copying moleculekit/share/pdb2pqr/residues/OMX.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-02T15:32:06,008   copying moleculekit/share/pdb2pqr/residues/OMX.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-02T15:32:06,010   copying moleculekit/share/pdb2pqr/residues/ONL.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-02T15:32:06,011   copying moleculekit/share/pdb2pqr/residues/ONL.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-02T15:32:06,014   copying moleculekit/share/pdb2pqr/residues/ORM.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-02T15:32:06,015   copying moleculekit/share/pdb2pqr/residues/ORM.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-02T15:32:06,018   copying moleculekit/share/pdb2pqr/residues/P1L.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-02T15:32:06,020   copying moleculekit/share/pdb2pqr/residues/P1L.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-02T15:32:06,023   copying moleculekit/share/pdb2pqr/residues/PCA.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-02T15:32:06,025   copying moleculekit/share/pdb2pqr/residues/PCA.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-02T15:32:06,027   copying moleculekit/share/pdb2pqr/residues/PRK.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-02T15:32:06,029   copying moleculekit/share/pdb2pqr/residues/PRK.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-02T15:32:06,031   copying moleculekit/share/pdb2pqr/residues/PTR.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-02T15:32:06,033   copying moleculekit/share/pdb2pqr/residues/PTR.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-02T15:32:06,035   copying moleculekit/share/pdb2pqr/residues/SEP.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-02T15:32:06,037   copying moleculekit/share/pdb2pqr/residues/SEP.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-02T15:32:06,039   copying moleculekit/share/pdb2pqr/residues/TPO.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-02T15:32:06,041   copying moleculekit/share/pdb2pqr/residues/TPO.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-02T15:32:06,043   copying moleculekit/share/pdb2pqr/residues/TRO.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-02T15:32:06,045   copying moleculekit/share/pdb2pqr/residues/TRO.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-02T15:32:06,047   copying moleculekit/share/pdb2pqr/residues/TY2.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-02T15:32:06,049   copying moleculekit/share/pdb2pqr/residues/TY2.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-02T15:32:06,051   copying moleculekit/share/pdb2pqr/residues/TYQ.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-02T15:32:06,053   copying moleculekit/share/pdb2pqr/residues/TYQ.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-02T15:32:06,055   copying moleculekit/share/pdb2pqr/residues/YCM.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-02T15:32:06,057   copying moleculekit/share/pdb2pqr/residues/YCM.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-02T15:32:06,059   copying moleculekit/share/pdb2pqr/residues/YNM.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-02T15:32:06,061   copying moleculekit/share/pdb2pqr/residues/YNM.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-02T15:32:06,063   creating build/lib.linux-armv7l-cpython-39/moleculekit/tmalign
2024-07-02T15:32:06,064   copying moleculekit/tmalign/tmalign_util.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/tmalign
2024-07-02T15:32:06,085   copying moleculekit/tmalign/tmalign_util.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/tmalign
2024-07-02T15:32:06,087   copying moleculekit/tmalign/tmalignlib.pxd -> build/lib.linux-armv7l-cpython-39/moleculekit/tmalign
2024-07-02T15:32:06,089   creating build/lib.linux-armv7l-cpython-39/moleculekit/tmalign/include
2024-07-02T15:32:06,090   copying moleculekit/tmalign/include/TMAlign.h -> build/lib.linux-armv7l-cpython-39/moleculekit/tmalign/include
2024-07-02T15:32:06,092   creating build/lib.linux-armv7l-cpython-39/moleculekit/tmalign/src
2024-07-02T15:32:06,093   copying moleculekit/tmalign/src/TMAlign.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/tmalign/src
2024-07-02T15:32:06,100   creating build/lib.linux-armv7l-cpython-39/moleculekit/wrapping
2024-07-02T15:32:06,101   copying moleculekit/wrapping/wrapping.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/wrapping
2024-07-02T15:32:06,137   copying moleculekit/wrapping/wrapping.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/wrapping
2024-07-02T15:32:06,139   creating build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/binpos
2024-07-02T15:32:06,140   copying moleculekit/fileformats/binpos/binpos.c -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/binpos
2024-07-02T15:32:06,160   copying moleculekit/fileformats/binpos/binpos.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/binpos
2024-07-02T15:32:06,163   copying moleculekit/fileformats/binpos/binposlib.pxd -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/binpos
2024-07-02T15:32:06,165   creating build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/binpos/include
2024-07-02T15:32:06,167   copying moleculekit/fileformats/binpos/include/binposplugin.h -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/binpos/include
2024-07-02T15:32:06,169   copying moleculekit/fileformats/binpos/include/largefiles.h -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/binpos/include
2024-07-02T15:32:06,171   copying moleculekit/fileformats/binpos/include/molfile_plugin.h -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/binpos/include
2024-07-02T15:32:06,175   creating build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/binpos/src
2024-07-02T15:32:06,176   copying moleculekit/fileformats/binpos/src/binposplugin.c -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/binpos/src
2024-07-02T15:32:06,179   creating build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/dcd
2024-07-02T15:32:06,180   copying moleculekit/fileformats/dcd/dcd.c -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/dcd
2024-07-02T15:32:06,201   copying moleculekit/fileformats/dcd/dcd.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/dcd
2024-07-02T15:32:06,204   copying moleculekit/fileformats/dcd/dcdlib.pxd -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/dcd
2024-07-02T15:32:06,206   creating build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/dcd/include
2024-07-02T15:32:06,207   copying moleculekit/fileformats/dcd/include/dcdplugin.h -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/dcd/include
2024-07-02T15:32:06,210   copying moleculekit/fileformats/dcd/include/endianswap.h -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/dcd/include
2024-07-02T15:32:06,212   copying moleculekit/fileformats/dcd/include/fastio.h -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/dcd/include
2024-07-02T15:32:06,215   copying moleculekit/fileformats/dcd/include/largefiles.h -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/dcd/include
2024-07-02T15:32:06,217   copying moleculekit/fileformats/dcd/include/molfile_plugin.h -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/dcd/include
2024-07-02T15:32:06,220   creating build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/dcd/src
2024-07-02T15:32:06,222   copying moleculekit/fileformats/dcd/src/dcdplugin.c -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/dcd/src
2024-07-02T15:32:06,227   creating build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc
2024-07-02T15:32:06,229   copying moleculekit/fileformats/xtc/trr.c -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc
2024-07-02T15:32:06,259   copying moleculekit/fileformats/xtc/trr.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc
2024-07-02T15:32:06,262   copying moleculekit/fileformats/xtc/trrlib.pxd -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc
2024-07-02T15:32:06,264   copying moleculekit/fileformats/xtc/xdrlib.pxd -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc
2024-07-02T15:32:06,266   copying moleculekit/fileformats/xtc/xtc.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc
2024-07-02T15:32:06,286   copying moleculekit/fileformats/xtc/xtc.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc
2024-07-02T15:32:06,288   copying moleculekit/fileformats/xtc/xtclib.pxd -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc
2024-07-02T15:32:06,290   creating build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/include
2024-07-02T15:32:06,291   copying moleculekit/fileformats/xtc/include/trr_header.h -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/include
2024-07-02T15:32:06,293   copying moleculekit/fileformats/xtc/include/xdr_seek.h -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/include
2024-07-02T15:32:06,295   copying moleculekit/fileformats/xtc/include/xdrfile.h -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/include
2024-07-02T15:32:06,298   copying moleculekit/fileformats/xtc/include/xdrfile_trr.h -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/include
2024-07-02T15:32:06,300   copying moleculekit/fileformats/xtc/include/xdrfile_xtc.h -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/include
2024-07-02T15:32:06,302   copying moleculekit/fileformats/xtc/include/xtc.h -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/include
2024-07-02T15:32:06,303   creating build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/src
2024-07-02T15:32:06,304   copying moleculekit/fileformats/xtc/src/xdr_seek.c -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/src
2024-07-02T15:32:06,306   copying moleculekit/fileformats/xtc/src/xdrfile.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/src
2024-07-02T15:32:06,310   copying moleculekit/fileformats/xtc/src/xdrfile_trr.c -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/src
2024-07-02T15:32:06,312   copying moleculekit/fileformats/xtc/src/xdrfile_xtc.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/src
2024-07-02T15:32:06,314   copying moleculekit/fileformats/xtc/src/xtc.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/src
2024-07-02T15:32:06,318   creating build/lib.linux-armv7l-cpython-39/moleculekit/interactions/cationpi
2024-07-02T15:32:06,318   copying moleculekit/interactions/cationpi/cationpi.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/interactions/cationpi
2024-07-02T15:32:06,352   copying moleculekit/interactions/cationpi/cationpi.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/interactions/cationpi
2024-07-02T15:32:06,354   creating build/lib.linux-armv7l-cpython-39/moleculekit/interactions/hbonds
2024-07-02T15:32:06,355   copying moleculekit/interactions/hbonds/hbonds.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/interactions/hbonds
2024-07-02T15:32:06,380   copying moleculekit/interactions/hbonds/hbonds.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/interactions/hbonds
2024-07-02T15:32:06,382   creating build/lib.linux-armv7l-cpython-39/moleculekit/interactions/pipi
2024-07-02T15:32:06,383   copying moleculekit/interactions/pipi/pipi.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/interactions/pipi
2024-07-02T15:32:06,403   copying moleculekit/interactions/pipi/pipi.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/interactions/pipi
2024-07-02T15:32:06,406   creating build/lib.linux-armv7l-cpython-39/moleculekit/interactions/sigmahole
2024-07-02T15:32:06,406   copying moleculekit/interactions/sigmahole/sigmahole.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/interactions/sigmahole
2024-07-02T15:32:06,438   copying moleculekit/interactions/sigmahole/sigmahole.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/interactions/sigmahole
2024-07-02T15:32:06,452   UPDATING build/lib.linux-armv7l-cpython-39/moleculekit/_version.py
2024-07-02T15:32:06,452   set build/lib.linux-armv7l-cpython-39/moleculekit/_version.py to '1.8.36'
2024-07-02T15:32:06,452   running build_ext
2024-07-02T15:32:06,463   building 'moleculekit.interactions.hbonds' extension
2024-07-02T15:32:06,464   creating build/temp.linux-armv7l-cpython-39
2024-07-02T15:32:06,465   creating build/temp.linux-armv7l-cpython-39/moleculekit
2024-07-02T15:32:06,465   creating build/temp.linux-armv7l-cpython-39/moleculekit/interactions
2024-07-02T15:32:06,466   creating build/temp.linux-armv7l-cpython-39/moleculekit/interactions/hbonds
2024-07-02T15:32:06,467   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-3gnvbl2f/overlay/lib/python3.9/site-packages/numpy/_core/include -I/usr/include/python3.9 -c moleculekit/interactions/hbonds/hbonds.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/interactions/hbonds/hbonds.o -O3
2024-07-02T15:32:06,927   In file included from /tmp/pip-build-env-3gnvbl2f/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarraytypes.h:1909,
2024-07-02T15:32:06,927                    from /tmp/pip-build-env-3gnvbl2f/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarrayobject.h:12,
2024-07-02T15:32:06,928                    from /tmp/pip-build-env-3gnvbl2f/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayobject.h:5,
2024-07-02T15:32:06,928                    from moleculekit/interactions/hbonds/hbonds.cpp:1265:
2024-07-02T15:32:06,928   /tmp/pip-build-env-3gnvbl2f/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2024-07-02T15:32:06,928      17 | #warning "Using deprecated NumPy API, disable it with " \
2024-07-02T15:32:06,928         |  ^~~~~~~
2024-07-02T15:32:07,510   In file included from /tmp/pip-build-env-3gnvbl2f/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ufuncobject.h:4,
2024-07-02T15:32:07,511                    from moleculekit/interactions/hbonds/hbonds.cpp:1269:
2024-07-02T15:32:07,511   /tmp/pip-build-env-3gnvbl2f/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/npy_math.h: In function ‘npy_longdouble npy_creall(npy_clongdouble)’:
2024-07-02T15:32:07,511   /tmp/pip-build-env-3gnvbl2f/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/npy_math.h:405:13: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
2024-07-02T15:32:07,511     405 |     return ((longdouble_t *) &z)[0];
2024-07-02T15:32:07,511         |            ~^~~~~~~~~~~~~~~~~~~~
2024-07-02T15:32:30,343   moleculekit/interactions/hbonds/hbonds.cpp: In function ‘PyObject* __pyx_pw_11moleculekit_12interactions_6hbonds_1calculate(PyObject*, PyObject* const*, Py_ssize_t, PyObject*)’:
2024-07-02T15:32:30,343   moleculekit/interactions/hbonds/hbonds.cpp:21469:52: warning: ‘__pyx_v_d_idx_h’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2024-07-02T15:32:30,344   21469 |             (__pyx_v_results[__pyx_v_f]).push_back(__pyx_v_d_idx_h);
2024-07-02T15:32:30,344         |                                                    ^~~~~~~~~~~~~~~
2024-07-02T15:32:30,344   moleculekit/interactions/hbonds/hbonds.cpp:20486:57: note: ‘__pyx_v_d_idx_h’ was declared here
2024-07-02T15:32:30,344   20486 |   __pyx_t_11moleculekit_12interactions_6hbonds_UINT32_t __pyx_v_d_idx_h;
2024-07-02T15:32:30,344         |                                                         ^~~~~~~~~~~~~~~
2024-07-02T15:32:33,546   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/interactions/hbonds/hbonds.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/interactions/hbonds.cpython-39-arm-linux-gnueabihf.so
2024-07-02T15:32:33,864   building 'moleculekit.interactions.pipi' extension
2024-07-02T15:32:33,864   creating build/temp.linux-armv7l-cpython-39/moleculekit/interactions/pipi
2024-07-02T15:32:33,865   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-3gnvbl2f/overlay/lib/python3.9/site-packages/numpy/_core/include -I/usr/include/python3.9 -c moleculekit/interactions/pipi/pipi.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/interactions/pipi/pipi.o -O3
2024-07-02T15:32:34,101   In file included from /tmp/pip-build-env-3gnvbl2f/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarraytypes.h:1909,
2024-07-02T15:32:34,101                    from /tmp/pip-build-env-3gnvbl2f/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarrayobject.h:12,
2024-07-02T15:32:34,101                    from /tmp/pip-build-env-3gnvbl2f/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayobject.h:5,
2024-07-02T15:32:34,101                    from moleculekit/interactions/pipi/pipi.cpp:1265:
2024-07-02T15:32:34,101   /tmp/pip-build-env-3gnvbl2f/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2024-07-02T15:32:34,102      17 | #warning "Using deprecated NumPy API, disable it with " \
2024-07-02T15:32:34,102         |  ^~~~~~~
2024-07-02T15:32:34,538   In file included from /tmp/pip-build-env-3gnvbl2f/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ufuncobject.h:4,
2024-07-02T15:32:34,538                    from moleculekit/interactions/pipi/pipi.cpp:1269:
2024-07-02T15:32:34,538   /tmp/pip-build-env-3gnvbl2f/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/npy_math.h: In function ‘npy_longdouble npy_creall(npy_clongdouble)’:
2024-07-02T15:32:34,538   /tmp/pip-build-env-3gnvbl2f/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/npy_math.h:405:13: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
2024-07-02T15:32:34,538     405 |     return ((longdouble_t *) &z)[0];
2024-07-02T15:32:34,539         |            ~^~~~~~~~~~~~~~~~~~~~
2024-07-02T15:33:02,303   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/interactions/pipi/pipi.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/interactions/pipi.cpython-39-arm-linux-gnueabihf.so
2024-07-02T15:33:02,627   building 'moleculekit.interactions.cationpi' extension
2024-07-02T15:33:02,627   creating build/temp.linux-armv7l-cpython-39/moleculekit/interactions/cationpi
2024-07-02T15:33:02,628   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-3gnvbl2f/overlay/lib/python3.9/site-packages/numpy/_core/include -I/usr/include/python3.9 -c moleculekit/interactions/cationpi/cationpi.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/interactions/cationpi/cationpi.o -O3
2024-07-02T15:33:02,860   In file included from /tmp/pip-build-env-3gnvbl2f/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarraytypes.h:1909,
2024-07-02T15:33:02,860                    from /tmp/pip-build-env-3gnvbl2f/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarrayobject.h:12,
2024-07-02T15:33:02,860                    from /tmp/pip-build-env-3gnvbl2f/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayobject.h:5,
2024-07-02T15:33:02,860                    from moleculekit/interactions/cationpi/cationpi.cpp:1265:
2024-07-02T15:33:02,860   /tmp/pip-build-env-3gnvbl2f/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2024-07-02T15:33:02,860      17 | #warning "Using deprecated NumPy API, disable it with " \
2024-07-02T15:33:02,861         |  ^~~~~~~
2024-07-02T15:33:03,295   In file included from /tmp/pip-build-env-3gnvbl2f/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ufuncobject.h:4,
2024-07-02T15:33:03,296                    from moleculekit/interactions/cationpi/cationpi.cpp:1269:
2024-07-02T15:33:03,296   /tmp/pip-build-env-3gnvbl2f/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/npy_math.h: In function ‘npy_longdouble npy_creall(npy_clongdouble)’:
2024-07-02T15:33:03,296   /tmp/pip-build-env-3gnvbl2f/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/npy_math.h:405:13: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
2024-07-02T15:33:03,296     405 |     return ((longdouble_t *) &z)[0];
2024-07-02T15:33:03,296         |            ~^~~~~~~~~~~~~~~~~~~~
2024-07-02T15:33:30,749   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/interactions/cationpi/cationpi.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/interactions/cationpi.cpython-39-arm-linux-gnueabihf.so
2024-07-02T15:33:31,128   building 'moleculekit.interactions.sigmahole' extension
2024-07-02T15:33:31,129   creating build/temp.linux-armv7l-cpython-39/moleculekit/interactions/sigmahole
2024-07-02T15:33:31,130   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-3gnvbl2f/overlay/lib/python3.9/site-packages/numpy/_core/include -I/usr/include/python3.9 -c moleculekit/interactions/sigmahole/sigmahole.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/interactions/sigmahole/sigmahole.o -O3
2024-07-02T15:33:31,392   In file included from /tmp/pip-build-env-3gnvbl2f/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarraytypes.h:1909,
2024-07-02T15:33:31,392                    from /tmp/pip-build-env-3gnvbl2f/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarrayobject.h:12,
2024-07-02T15:33:31,392                    from /tmp/pip-build-env-3gnvbl2f/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayobject.h:5,
2024-07-02T15:33:31,393                    from moleculekit/interactions/sigmahole/sigmahole.cpp:1265:
2024-07-02T15:33:31,393   /tmp/pip-build-env-3gnvbl2f/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2024-07-02T15:33:31,393      17 | #warning "Using deprecated NumPy API, disable it with " \
2024-07-02T15:33:31,393         |  ^~~~~~~
2024-07-02T15:33:31,828   In file included from /tmp/pip-build-env-3gnvbl2f/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ufuncobject.h:4,
2024-07-02T15:33:31,829                    from moleculekit/interactions/sigmahole/sigmahole.cpp:1269:
2024-07-02T15:33:31,829   /tmp/pip-build-env-3gnvbl2f/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/npy_math.h: In function ‘npy_longdouble npy_creall(npy_clongdouble)’:
2024-07-02T15:33:31,829   /tmp/pip-build-env-3gnvbl2f/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/npy_math.h:405:13: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
2024-07-02T15:33:31,829     405 |     return ((longdouble_t *) &z)[0];
2024-07-02T15:33:31,829         |            ~^~~~~~~~~~~~~~~~~~~~
2024-07-02T15:33:58,856   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/interactions/sigmahole/sigmahole.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/interactions/sigmahole.cpython-39-arm-linux-gnueabihf.so
2024-07-02T15:33:59,173   building 'moleculekit.wrapping' extension
2024-07-02T15:33:59,174   creating build/temp.linux-armv7l-cpython-39/moleculekit/wrapping
2024-07-02T15:33:59,175   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-3gnvbl2f/overlay/lib/python3.9/site-packages/numpy/_core/include -I/usr/include/python3.9 -c moleculekit/wrapping/wrapping.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/wrapping/wrapping.o -O3
2024-07-02T15:33:59,408   In file included from /tmp/pip-build-env-3gnvbl2f/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarraytypes.h:1909,
2024-07-02T15:33:59,408                    from /tmp/pip-build-env-3gnvbl2f/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarrayobject.h:12,
2024-07-02T15:33:59,408                    from /tmp/pip-build-env-3gnvbl2f/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayobject.h:5,
2024-07-02T15:33:59,408                    from moleculekit/wrapping/wrapping.cpp:1265:
2024-07-02T15:33:59,408   /tmp/pip-build-env-3gnvbl2f/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2024-07-02T15:33:59,409      17 | #warning "Using deprecated NumPy API, disable it with " \
2024-07-02T15:33:59,409         |  ^~~~~~~
2024-07-02T15:33:59,851   In file included from /tmp/pip-build-env-3gnvbl2f/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ufuncobject.h:4,
2024-07-02T15:33:59,851                    from moleculekit/wrapping/wrapping.cpp:1269:
2024-07-02T15:33:59,851   /tmp/pip-build-env-3gnvbl2f/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/npy_math.h: In function ‘npy_longdouble npy_creall(npy_clongdouble)’:
2024-07-02T15:33:59,852   /tmp/pip-build-env-3gnvbl2f/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/npy_math.h:405:13: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
2024-07-02T15:33:59,852     405 |     return ((longdouble_t *) &z)[0];
2024-07-02T15:33:59,852         |            ~^~~~~~~~~~~~~~~~~~~~
2024-07-02T15:34:25,397   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/wrapping/wrapping.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/wrapping.cpython-39-arm-linux-gnueabihf.so
2024-07-02T15:34:25,611   building 'moleculekit.bondguesser_utils' extension
2024-07-02T15:34:25,611   creating build/temp.linux-armv7l-cpython-39/moleculekit/bondguesser_utils
2024-07-02T15:34:25,612   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-3gnvbl2f/overlay/lib/python3.9/site-packages/numpy/_core/include -I/usr/include/python3.9 -c moleculekit/bondguesser_utils/bondguesser_utils.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/bondguesser_utils/bondguesser_utils.o -O3
2024-07-02T15:34:25,842   In file included from /tmp/pip-build-env-3gnvbl2f/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarraytypes.h:1909,
2024-07-02T15:34:25,842                    from /tmp/pip-build-env-3gnvbl2f/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarrayobject.h:12,
2024-07-02T15:34:25,842                    from /tmp/pip-build-env-3gnvbl2f/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayobject.h:5,
2024-07-02T15:34:25,843                    from moleculekit/bondguesser_utils/bondguesser_utils.cpp:1265:
2024-07-02T15:34:25,843   /tmp/pip-build-env-3gnvbl2f/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2024-07-02T15:34:25,843      17 | #warning "Using deprecated NumPy API, disable it with " \
2024-07-02T15:34:25,843         |  ^~~~~~~
2024-07-02T15:34:26,274   In file included from /tmp/pip-build-env-3gnvbl2f/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ufuncobject.h:4,
2024-07-02T15:34:26,274                    from moleculekit/bondguesser_utils/bondguesser_utils.cpp:1269:
2024-07-02T15:34:26,274   /tmp/pip-build-env-3gnvbl2f/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/npy_math.h: In function ‘npy_longdouble npy_creall(npy_clongdouble)’:
2024-07-02T15:34:26,274   /tmp/pip-build-env-3gnvbl2f/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/npy_math.h:405:13: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
2024-07-02T15:34:26,274     405 |     return ((longdouble_t *) &z)[0];
2024-07-02T15:34:26,274         |            ~^~~~~~~~~~~~~~~~~~~~
2024-07-02T15:34:27,382   moleculekit/bondguesser_utils/bondguesser_utils.cpp: In function ‘PyObject* __pyx_pf_11moleculekit_17bondguesser_utils_make_grid_neighborlist_nonperiodic(PyObject*, __Pyx_memviewslice, __pyx_t_11moleculekit_17bondguesser_utils_UINT32_t, __pyx_t_11moleculekit_17bondguesser_utils_UINT32_t, __pyx_t_11moleculekit_17bondguesser_utils_UINT32_t)’:
2024-07-02T15:34:27,382   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20255:33: warning: comparison of integer expressions of different signedness: ‘int’ and ‘__pyx_t_11moleculekit_17bondguesser_utils_UINT32_t’ {aka ‘long unsigned int’} [-Wsign-compare]
2024-07-02T15:34:27,383   20255 |   for (__pyx_t_3 = 0; __pyx_t_3 < __pyx_t_2; __pyx_t_3+=1) {
2024-07-02T15:34:27,383         |                       ~~~~~~~~~~^~~~~~~~~~~
2024-07-02T15:34:27,383   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20267:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘__pyx_t_11moleculekit_17bondguesser_utils_UINT32_t’ {aka ‘long unsigned int’} [-Wsign-compare]
2024-07-02T15:34:27,383   20267 |     for (__pyx_t_6 = 0; __pyx_t_6 < __pyx_t_5; __pyx_t_6+=1) {
2024-07-02T15:34:27,384         |                         ~~~~~~~~~~^~~~~~~~~~~
2024-07-02T15:34:27,384   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20279:37: warning: comparison of integer expressions of different signedness: ‘int’ and ‘__pyx_t_11moleculekit_17bondguesser_utils_UINT32_t’ {aka ‘long unsigned int’} [-Wsign-compare]
2024-07-02T15:34:27,384   20279 |       for (__pyx_t_9 = 0; __pyx_t_9 < __pyx_t_8; __pyx_t_9+=1) {
2024-07-02T15:34:27,384         |                           ~~~~~~~~~~^~~~~~~~~~~
2024-07-02T15:34:27,385   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20318:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-07-02T15:34:27,385   20318 |         __pyx_t_12 = (__pyx_v_xi < (__pyx_v_xboxes - 1));
2024-07-02T15:34:27,385         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-07-02T15:34:27,386   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20357:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-07-02T15:34:27,386   20357 |         __pyx_t_12 = (__pyx_v_yi < (__pyx_v_yboxes - 1));
2024-07-02T15:34:27,386         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-07-02T15:34:27,387   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20396:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-07-02T15:34:27,387   20396 |         __pyx_t_12 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2024-07-02T15:34:27,387         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-07-02T15:34:27,388   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20435:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-07-02T15:34:27,388   20435 |         __pyx_t_13 = (__pyx_v_xi < (__pyx_v_xboxes - 1));
2024-07-02T15:34:27,388         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-07-02T15:34:27,389   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20441:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-07-02T15:34:27,389   20441 |         __pyx_t_13 = (__pyx_v_yi < (__pyx_v_yboxes - 1));
2024-07-02T15:34:27,389         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-07-02T15:34:27,390   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20482:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-07-02T15:34:27,390   20482 |         __pyx_t_13 = (__pyx_v_xi < (__pyx_v_xboxes - 1));
2024-07-02T15:34:27,390         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-07-02T15:34:27,391   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20488:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-07-02T15:34:27,391   20488 |         __pyx_t_13 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2024-07-02T15:34:27,391         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-07-02T15:34:27,392   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20529:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-07-02T15:34:27,392   20529 |         __pyx_t_13 = (__pyx_v_yi < (__pyx_v_yboxes - 1));
2024-07-02T15:34:27,392         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-07-02T15:34:27,393   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20535:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-07-02T15:34:27,393   20535 |         __pyx_t_13 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2024-07-02T15:34:27,393         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-07-02T15:34:27,394   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20576:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-07-02T15:34:27,394   20576 |         __pyx_t_13 = (__pyx_v_xi < (__pyx_v_xboxes - 1));
2024-07-02T15:34:27,394         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-07-02T15:34:27,395   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20629:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-07-02T15:34:27,395   20629 |         __pyx_t_13 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2024-07-02T15:34:27,395         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-07-02T15:34:27,396   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20676:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-07-02T15:34:27,396   20676 |         __pyx_t_13 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2024-07-02T15:34:27,396         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-07-02T15:34:27,397   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20717:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-07-02T15:34:27,397   20717 |         __pyx_t_13 = (__pyx_v_xi < (__pyx_v_xboxes - 1));
2024-07-02T15:34:27,397         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-07-02T15:34:27,398   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20723:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-07-02T15:34:27,398   20723 |         __pyx_t_13 = (__pyx_v_yi < (__pyx_v_yboxes - 1));
2024-07-02T15:34:27,398         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-07-02T15:34:27,398   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20729:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-07-02T15:34:27,399   20729 |         __pyx_t_13 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2024-07-02T15:34:27,399         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-07-02T15:34:27,400   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20776:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-07-02T15:34:27,400   20776 |         __pyx_t_13 = (__pyx_v_yi < (__pyx_v_yboxes - 1));
2024-07-02T15:34:27,400         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-07-02T15:34:27,400   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20782:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-07-02T15:34:27,401   20782 |         __pyx_t_13 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2024-07-02T15:34:27,401         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-07-02T15:34:27,401   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20823:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-07-02T15:34:27,402   20823 |         __pyx_t_13 = (__pyx_v_xi < (__pyx_v_xboxes - 1));
2024-07-02T15:34:27,402         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-07-02T15:34:27,402   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20835:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-07-02T15:34:27,403   20835 |         __pyx_t_13 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2024-07-02T15:34:27,403         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-07-02T15:34:27,404   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20888:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-07-02T15:34:27,404   20888 |         __pyx_t_13 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2024-07-02T15:34:27,404         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-07-02T15:34:27,424   moleculekit/bondguesser_utils/bondguesser_utils.cpp: In function ‘PyObject* __pyx_pf_11moleculekit_17bondguesser_utils_2grid_bonds(PyObject*, __Pyx_memviewslice, __Pyx_memviewslice, __Pyx_memviewslice, float, int, __Pyx_memviewslice, __Pyx_memviewslice)’:
2024-07-02T15:34:27,424   moleculekit/bondguesser_utils/bondguesser_utils.cpp:21510:37: warning: comparison of integer expressions of different signedness: ‘__pyx_t_11moleculekit_17bondguesser_utils_UINT32_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
2024-07-02T15:34:27,424   21510 |       __pyx_t_6 = (__pyx_v_boxneigh == __pyx_v_n_boxes);
2024-07-02T15:34:27,424         |                    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
2024-07-02T15:34:27,425   moleculekit/bondguesser_utils/bondguesser_utils.cpp:21547:37: warning: comparison of integer expressions of different signedness: ‘__pyx_t_11moleculekit_17bondguesser_utils_UINT32_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
2024-07-02T15:34:27,425   21547 |       __pyx_t_6 = (__pyx_v_boxneigh == __pyx_v_boxidx);
2024-07-02T15:34:27,425         |                    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
2024-07-02T15:34:50,474   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/bondguesser_utils/bondguesser_utils.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/bondguesser_utils.cpython-39-arm-linux-gnueabihf.so
2024-07-02T15:34:50,784   building 'moleculekit.atomselect_utils' extension
2024-07-02T15:34:50,784   creating build/temp.linux-armv7l-cpython-39/moleculekit/atomselect_utils
2024-07-02T15:34:50,785   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-3gnvbl2f/overlay/lib/python3.9/site-packages/numpy/_core/include -I/usr/include/python3.9 -c moleculekit/atomselect_utils/atomselect_utils.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/atomselect_utils/atomselect_utils.o -O3
2024-07-02T15:34:51,031   In file included from /tmp/pip-build-env-3gnvbl2f/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarraytypes.h:1909,
2024-07-02T15:34:51,031                    from /tmp/pip-build-env-3gnvbl2f/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarrayobject.h:12,
2024-07-02T15:34:51,031                    from /tmp/pip-build-env-3gnvbl2f/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayobject.h:5,
2024-07-02T15:34:51,032                    from moleculekit/atomselect_utils/atomselect_utils.cpp:1282:
2024-07-02T15:34:51,032   /tmp/pip-build-env-3gnvbl2f/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2024-07-02T15:34:51,032      17 | #warning "Using deprecated NumPy API, disable it with " \
2024-07-02T15:34:51,032         |  ^~~~~~~
2024-07-02T15:34:51,519   In file included from /tmp/pip-build-env-3gnvbl2f/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ufuncobject.h:4,
2024-07-02T15:34:51,519                    from moleculekit/atomselect_utils/atomselect_utils.cpp:1286:
2024-07-02T15:34:51,519   /tmp/pip-build-env-3gnvbl2f/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/npy_math.h: In function ‘npy_longdouble npy_creall(npy_clongdouble)’:
2024-07-02T15:34:51,520   /tmp/pip-build-env-3gnvbl2f/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/npy_math.h:405:13: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
2024-07-02T15:34:51,520     405 |     return ((longdouble_t *) &z)[0];
2024-07-02T15:34:51,520         |            ~^~~~~~~~~~~~~~~~~~~~
2024-07-02T15:34:52,782   moleculekit/atomselect_utils/atomselect_utils.cpp: In function ‘bool __pyx_f_11moleculekit_16atomselect_utils__find_connected_subfragment(int, int, const char*, const char*, const char*, __Pyx_memviewslice, __Pyx_memviewslice, __Pyx_memviewslice, std::vector<std::__cxx11::basic_string<char> >&, __Pyx_memviewslice, std::vector<std::vector<int> >&, std::vector<std::vector<int> >&, std::vector<std::vector<int> >&)’:
2024-07-02T15:34:52,782   moleculekit/atomselect_utils/atomselect_utils.cpp:23709:161: warning: comparison of integer expressions of different signedness: ‘__pyx_t_11moleculekit_16atomselect_utils_UINT32_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
2024-07-02T15:34:52,782   23709 |       __pyx_t_3 = ((*((__pyx_t_11moleculekit_16atomselect_utils_UINT32_t *) ( /* dim=0 */ (__pyx_v_uq_resid.data + __pyx_t_2 * __pyx_v_uq_resid.strides[0]) ))) != __pyx_v_resnum);
2024-07-02T15:34:52,782         |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
2024-07-02T15:34:52,787   moleculekit/atomselect_utils/atomselect_utils.cpp: In function ‘bool __pyx_f_11moleculekit_16atomselect_utils__find_subfragments(int, std::vector<std::vector<int> >&, std::vector<std::vector<int> >&, __Pyx_memviewslice, __Pyx_memviewslice, __Pyx_memviewslice, std::vector<std::__cxx11::basic_string<char> >&, __Pyx_memviewslice, std::vector<std::vector<int> >&)’:
2024-07-02T15:34:52,788   moleculekit/atomselect_utils/atomselect_utils.cpp:23961:163: warning: comparison of integer expressions of different signedness: ‘__pyx_t_11moleculekit_16atomselect_utils_UINT32_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
2024-07-02T15:34:52,788   23961 |         __pyx_t_6 = ((*((__pyx_t_11moleculekit_16atomselect_utils_UINT32_t *) ( /* dim=0 */ (__pyx_v_uq_resid.data + __pyx_t_5 * __pyx_v_uq_resid.strides[0]) ))) != __pyx_v_i);
2024-07-02T15:34:52,788         |                      ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2024-07-02T15:34:52,793   moleculekit/atomselect_utils/atomselect_utils.cpp: In function ‘bool __pyx_f_11moleculekit_16atomselect_utils__find_subfragments_topologically(int, std::vector<std::vector<int> >&, std::vector<std::vector<int> >&, __Pyx_memviewslice, __Pyx_memviewslice, __Pyx_memviewslice, std::vector<std::__cxx11::basic_string<char> >&, __Pyx_memviewslice, std::vector<std::vector<int> >&)’:
2024-07-02T15:34:52,793   moleculekit/atomselect_utils/atomselect_utils.cpp:24228:163: warning: comparison of integer expressions of different signedness: ‘__pyx_t_11moleculekit_16atomselect_utils_UINT32_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
2024-07-02T15:34:52,793   24228 |         __pyx_t_6 = ((*((__pyx_t_11moleculekit_16atomselect_utils_UINT32_t *) ( /* dim=0 */ (__pyx_v_uq_resid.data + __pyx_t_5 * __pyx_v_uq_resid.strides[0]) ))) != __pyx_v_i);
2024-07-02T15:34:52,793         |                      ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2024-07-02T15:35:23,170   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/atomselect_utils/atomselect_utils.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/atomselect_utils.cpython-39-arm-linux-gnueabihf.so
2024-07-02T15:35:23,505   building 'moleculekit.distance_utils' extension
2024-07-02T15:35:23,506   creating build/temp.linux-armv7l-cpython-39/moleculekit/distance_utils
2024-07-02T15:35:23,507   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-3gnvbl2f/overlay/lib/python3.9/site-packages/numpy/_core/include -I/usr/include/python3.9 -c moleculekit/distance_utils/distance_utils.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/distance_utils/distance_utils.o -O3
2024-07-02T15:35:23,739   In file included from /tmp/pip-build-env-3gnvbl2f/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarraytypes.h:1909,
2024-07-02T15:35:23,740                    from /tmp/pip-build-env-3gnvbl2f/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarrayobject.h:12,
2024-07-02T15:35:23,740                    from /tmp/pip-build-env-3gnvbl2f/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayobject.h:5,
2024-07-02T15:35:23,740                    from moleculekit/distance_utils/distance_utils.cpp:1265:
2024-07-02T15:35:23,740   /tmp/pip-build-env-3gnvbl2f/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2024-07-02T15:35:23,740      17 | #warning "Using deprecated NumPy API, disable it with " \
2024-07-02T15:35:23,740         |  ^~~~~~~
2024-07-02T15:35:24,220   In file included from /tmp/pip-build-env-3gnvbl2f/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ufuncobject.h:4,
2024-07-02T15:35:24,220                    from moleculekit/distance_utils/distance_utils.cpp:1269:
2024-07-02T15:35:24,220   /tmp/pip-build-env-3gnvbl2f/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/npy_math.h: In function ‘npy_longdouble npy_creall(npy_clongdouble)’:
2024-07-02T15:35:24,220   /tmp/pip-build-env-3gnvbl2f/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/npy_math.h:405:13: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
2024-07-02T15:35:24,221     405 |     return ((longdouble_t *) &z)[0];
2024-07-02T15:35:24,221         |            ~^~~~~~~~~~~~~~~~~~~~
2024-07-02T15:35:25,404   moleculekit/distance_utils/distance_utils.cpp: In function ‘PyObject* __pyx_pf_11moleculekit_14distance_utils_2get_collisions(PyObject*, __Pyx_memviewslice, __Pyx_memviewslice, float)’:
2024-07-02T15:35:25,404   moleculekit/distance_utils/distance_utils.cpp:21813:33: warning: comparison of integer expressions of different signedness: ‘__pyx_t_11moleculekit_14distance_utils_UINT32_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
2024-07-02T15:35:25,404   21813 |   for (__pyx_t_3 = 0; __pyx_t_3 < __pyx_t_2; __pyx_t_3+=1) {
2024-07-02T15:35:25,404         |                       ~~~~~~~~~~^~~~~~~~~~~
2024-07-02T15:35:25,405   moleculekit/distance_utils/distance_utils.cpp:21825:35: warning: comparison of integer expressions of different signedness: ‘__pyx_t_11moleculekit_14distance_utils_UINT32_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
2024-07-02T15:35:25,405   21825 |     for (__pyx_t_6 = 0; __pyx_t_6 < __pyx_t_5; __pyx_t_6+=1) {
2024-07-02T15:35:25,405         |                         ~~~~~~~~~~^~~~~~~~~~~
2024-07-02T15:35:58,565   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/distance_utils/distance_utils.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/distance_utils.cpython-39-arm-linux-gnueabihf.so
2024-07-02T15:35:58,908   building 'moleculekit.occupancy_utils' extension
2024-07-02T15:35:58,909   creating build/temp.linux-armv7l-cpython-39/moleculekit/occupancy_utils
2024-07-02T15:35:58,910   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-3gnvbl2f/overlay/lib/python3.9/site-packages/numpy/_core/include -I/usr/include/python3.9 -c moleculekit/occupancy_utils/occupancy_utils.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/occupancy_utils/occupancy_utils.o -O3
2024-07-02T15:35:59,148   In file included from /tmp/pip-build-env-3gnvbl2f/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarraytypes.h:1909,
2024-07-02T15:35:59,148                    from /tmp/pip-build-env-3gnvbl2f/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarrayobject.h:12,
2024-07-02T15:35:59,148                    from /tmp/pip-build-env-3gnvbl2f/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayobject.h:5,
2024-07-02T15:35:59,148                    from moleculekit/occupancy_utils/occupancy_utils.cpp:1265:
2024-07-02T15:35:59,148   /tmp/pip-build-env-3gnvbl2f/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2024-07-02T15:35:59,148      17 | #warning "Using deprecated NumPy API, disable it with " \
2024-07-02T15:35:59,149         |  ^~~~~~~
2024-07-02T15:35:59,579   In file included from /tmp/pip-build-env-3gnvbl2f/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ufuncobject.h:4,
2024-07-02T15:35:59,579                    from moleculekit/occupancy_utils/occupancy_utils.cpp:1269:
2024-07-02T15:35:59,579   /tmp/pip-build-env-3gnvbl2f/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/npy_math.h: In function ‘npy_longdouble npy_creall(npy_clongdouble)’:
2024-07-02T15:35:59,580   /tmp/pip-build-env-3gnvbl2f/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/npy_math.h:405:13: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
2024-07-02T15:35:59,580     405 |     return ((longdouble_t *) &z)[0];
2024-07-02T15:35:59,580         |            ~^~~~~~~~~~~~~~~~~~~~
2024-07-02T15:36:22,197   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/occupancy_utils/occupancy_utils.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/occupancy_utils.cpython-39-arm-linux-gnueabihf.so
2024-07-02T15:36:22,408   building 'moleculekit.cython_utils' extension
2024-07-02T15:36:22,409   creating build/temp.linux-armv7l-cpython-39/moleculekit/cython_utils
2024-07-02T15:36:22,409   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-3gnvbl2f/overlay/lib/python3.9/site-packages/numpy/_core/include -I/usr/include/python3.9 -c moleculekit/cython_utils/cython_utils.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/cython_utils/cython_utils.o -O3
2024-07-02T15:36:22,644   In file included from /tmp/pip-build-env-3gnvbl2f/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarraytypes.h:1909,
2024-07-02T15:36:22,644                    from /tmp/pip-build-env-3gnvbl2f/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarrayobject.h:12,
2024-07-02T15:36:22,644                    from /tmp/pip-build-env-3gnvbl2f/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayobject.h:5,
2024-07-02T15:36:22,644                    from moleculekit/cython_utils/cython_utils.cpp:1265:
2024-07-02T15:36:22,644   /tmp/pip-build-env-3gnvbl2f/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2024-07-02T15:36:22,644      17 | #warning "Using deprecated NumPy API, disable it with " \
2024-07-02T15:36:22,644         |  ^~~~~~~
2024-07-02T15:36:23,076   In file included from /tmp/pip-build-env-3gnvbl2f/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ufuncobject.h:4,
2024-07-02T15:36:23,076                    from moleculekit/cython_utils/cython_utils.cpp:1269:
2024-07-02T15:36:23,077   /tmp/pip-build-env-3gnvbl2f/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/npy_math.h: In function ‘npy_longdouble npy_creall(npy_clongdouble)’:
2024-07-02T15:36:23,077   /tmp/pip-build-env-3gnvbl2f/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/npy_math.h:405:13: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
2024-07-02T15:36:23,077     405 |     return ((longdouble_t *) &z)[0];
2024-07-02T15:36:23,077         |            ~^~~~~~~~~~~~~~~~~~~~
2024-07-02T15:36:48,123   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/cython_utils/cython_utils.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/cython_utils.cpython-39-arm-linux-gnueabihf.so
2024-07-02T15:36:48,433   building 'moleculekit.xtc' extension
2024-07-02T15:36:48,434   creating build/temp.linux-armv7l-cpython-39/moleculekit/fileformats
2024-07-02T15:36:48,434   creating build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/xtc
2024-07-02T15:36:48,435   creating build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/src
2024-07-02T15:36:48,436   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/fileformats/xtc -Imoleculekit/fileformats/xtc/include/ -Imoleculekit/fileformats/xtc/ -I/tmp/pip-build-env-3gnvbl2f/overlay/lib/python3.9/site-packages/numpy/_core/include -I/usr/include/python3.9 -c moleculekit/fileformats/xtc/src/xdrfile.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/src/xdrfile.o
2024-07-02T15:36:48,678   moleculekit/fileformats/xtc/src/xdrfile.cpp:66:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-07-02T15:36:48,678      66 |  "OK",
2024-07-02T15:36:48,678         |  ^~~~
2024-07-02T15:36:48,678   moleculekit/fileformats/xtc/src/xdrfile.cpp:67:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-07-02T15:36:48,678      67 |  "Header",
2024-07-02T15:36:48,679         |  ^~~~~~~~
2024-07-02T15:36:48,679   moleculekit/fileformats/xtc/src/xdrfile.cpp:68:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-07-02T15:36:48,679      68 |  "String",
2024-07-02T15:36:48,679         |  ^~~~~~~~
2024-07-02T15:36:48,679   moleculekit/fileformats/xtc/src/xdrfile.cpp:69:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-07-02T15:36:48,680      69 |  "Double",
2024-07-02T15:36:48,680         |  ^~~~~~~~
2024-07-02T15:36:48,680   moleculekit/fileformats/xtc/src/xdrfile.cpp:70:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-07-02T15:36:48,680      70 |  "Integer",
2024-07-02T15:36:48,680         |  ^~~~~~~~~
2024-07-02T15:36:48,680   moleculekit/fileformats/xtc/src/xdrfile.cpp:71:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-07-02T15:36:48,680      71 |  "Float",
2024-07-02T15:36:48,681         |  ^~~~~~~
2024-07-02T15:36:48,681   moleculekit/fileformats/xtc/src/xdrfile.cpp:72:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-07-02T15:36:48,681      72 |  "Unsigned integer",
2024-07-02T15:36:48,681         |  ^~~~~~~~~~~~~~~~~~
2024-07-02T15:36:48,681   moleculekit/fileformats/xtc/src/xdrfile.cpp:73:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-07-02T15:36:48,682      73 |  "Compressed 3D coordinate",
2024-07-02T15:36:48,682         |  ^~~~~~~~~~~~~~~~~~~~~~~~~~
2024-07-02T15:36:48,682   moleculekit/fileformats/xtc/src/xdrfile.cpp:74:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-07-02T15:36:48,682      74 |  "Closing file",
2024-07-02T15:36:48,682         |  ^~~~~~~~~~~~~~
2024-07-02T15:36:48,682   moleculekit/fileformats/xtc/src/xdrfile.cpp:75:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-07-02T15:36:48,683      75 |  "Magic number",
2024-07-02T15:36:48,683         |  ^~~~~~~~~~~~~~
2024-07-02T15:36:48,683   moleculekit/fileformats/xtc/src/xdrfile.cpp:76:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-07-02T15:36:48,683      76 |  "Not enough memory",
2024-07-02T15:36:48,683         |  ^~~~~~~~~~~~~~~~~~~
2024-07-02T15:36:48,683   moleculekit/fileformats/xtc/src/xdrfile.cpp:77:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-07-02T15:36:48,683      77 |  "End of file",
2024-07-02T15:36:48,684         |  ^~~~~~~~~~~~~
2024-07-02T15:36:48,684   moleculekit/fileformats/xtc/src/xdrfile.cpp:78:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-07-02T15:36:48,684      78 |  "File not found"
2024-07-02T15:36:48,684         |  ^~~~~~~~~~~~~~~~
2024-07-02T15:36:48,692   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘int sizeofint(int)’:
2024-07-02T15:36:48,692   moleculekit/fileformats/xtc/src/xdrfile.cpp:459:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-07-02T15:36:48,693     459 |     while (size >= num && num_of_bits < 32)
2024-07-02T15:36:48,693         |            ~~~~~^~~~~~
2024-07-02T15:36:48,694   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘int sizeofints(int, unsigned int*)’:
2024-07-02T15:36:48,694   moleculekit/fileformats/xtc/src/xdrfile.cpp:505:32: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-07-02T15:36:48,694     505 |     while (bytes[num_of_bytes] >= num)
2024-07-02T15:36:48,694         |            ~~~~~~~~~~~~~~~~~~~~^~~~~~
2024-07-02T15:36:48,697   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘void encodeints(int*, int, int, unsigned int*, unsigned int*)’:
2024-07-02T15:36:48,697   moleculekit/fileformats/xtc/src/xdrfile.cpp:614:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-07-02T15:36:48,697     614 |     if (num_of_bits >= num_of_bytes * 8)
2024-07-02T15:36:48,697         |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
2024-07-02T15:36:48,698   moleculekit/fileformats/xtc/src/xdrfile.cpp:616:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-07-02T15:36:48,698     616 |   for (i = 0; i < num_of_bytes; i++)
2024-07-02T15:36:48,698         |               ~~^~~~~~~~~~~~~~
2024-07-02T15:36:48,698   moleculekit/fileformats/xtc/src/xdrfile.cpp:624:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-07-02T15:36:48,699     624 |   for (i = 0; i < num_of_bytes-1; i++)
2024-07-02T15:36:48,699         |               ~~^~~~~~~~~~~~~~~~
2024-07-02T15:36:48,700   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘int decodebits(int*, int)’:
2024-07-02T15:36:48,700   moleculekit/fileformats/xtc/src/xdrfile.cpp:664:16: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-07-02T15:36:48,701     664 |   if (lastbits < num_of_bits)
2024-07-02T15:36:48,701         |       ~~~~~~~~~^~~~~~~~~~~~~
2024-07-02T15:36:48,705   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘int xdrfile_decompress_coord_float(float*, int*, float*, XDRFILE*)’:
2024-07-02T15:36:48,705   moleculekit/fileformats/xtc/src/xdrfile.cpp:785:10: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-07-02T15:36:48,705     785 |  if(size3>xfp->buf1size)
2024-07-02T15:36:48,705         |     ~~~~~^~~~~~~~~~~~~~
2024-07-02T15:36:48,707   moleculekit/fileformats/xtc/src/xdrfile.cpp:842:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-07-02T15:36:48,707     842 |  maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2024-07-02T15:36:48,708         |                   ^
2024-07-02T15:36:48,710   moleculekit/fileformats/xtc/src/xdrfile.cpp:932:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-07-02T15:36:48,711     932 |     if(countmjh >= size3 ) { return -1; }
2024-07-02T15:36:48,711         |        ~~~~~~~~~^~~~~~~~
2024-07-02T15:36:48,711   moleculekit/fileformats/xtc/src/xdrfile.cpp:935:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-07-02T15:36:48,711     935 |     if(countmjh >= size3 ) { return -1; }
2024-07-02T15:36:48,712         |        ~~~~~~~~~^~~~~~~~
2024-07-02T15:36:48,712   moleculekit/fileformats/xtc/src/xdrfile.cpp:938:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-07-02T15:36:48,712     938 |     if(countmjh >= size3 ) { return -1; }
2024-07-02T15:36:48,712         |        ~~~~~~~~~^~~~~~~~
2024-07-02T15:36:48,713   moleculekit/fileformats/xtc/src/xdrfile.cpp:945:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-07-02T15:36:48,713     945 |     if(countmjh >= size3 ) { return -1; }
2024-07-02T15:36:48,713         |        ~~~~~~~~~^~~~~~~~
2024-07-02T15:36:48,714   moleculekit/fileformats/xtc/src/xdrfile.cpp:948:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-07-02T15:36:48,714     948 |     if(countmjh >= size3 ) { return -1; }
2024-07-02T15:36:48,714         |        ~~~~~~~~~^~~~~~~~
2024-07-02T15:36:48,714   moleculekit/fileformats/xtc/src/xdrfile.cpp:951:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-07-02T15:36:48,714     951 |     if(countmjh >= size3 ) { return -1; }
2024-07-02T15:36:48,715         |        ~~~~~~~~~^~~~~~~~
2024-07-02T15:36:48,715   moleculekit/fileformats/xtc/src/xdrfile.cpp:756:17: warning: variable ‘minidx’ set but not used [-Wunused-but-set-variable]
2024-07-02T15:36:48,716     756 |  int smallidx,  minidx, maxidx;
2024-07-02T15:36:48,716         |                 ^~~~~~
2024-07-02T15:36:48,716   moleculekit/fileformats/xtc/src/xdrfile.cpp:759:25: warning: variable ‘larger’ set but not used [-Wunused-but-set-variable]
2024-07-02T15:36:48,716     759 |  int smallnum, smaller, larger, i, is_smaller, run;
2024-07-02T15:36:48,716         |                         ^~~~~~
2024-07-02T15:36:48,716   moleculekit/fileformats/xtc/src/xdrfile.cpp:763:6: warning: unused variable ‘errval’ [-Wunused-variable]
2024-07-02T15:36:48,717     763 |  int errval=1;
2024-07-02T15:36:48,717         |      ^~~~~~
2024-07-02T15:36:48,719   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘int xdrfile_compress_coord_float(float*, int, float, XDRFILE*)’:
2024-07-02T15:36:48,720   moleculekit/fileformats/xtc/src/xdrfile.cpp:1011:10: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-07-02T15:36:48,720    1011 |  if(size3>xfp->buf1size)
2024-07-02T15:36:48,720         |     ~~~~~^~~~~~~~~~~~~~
2024-07-02T15:36:48,722   moleculekit/fileformats/xtc/src/xdrfile.cpp:1068:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-07-02T15:36:48,722    1068 |     countmjh++; if( countmjh> size3) { return -1; }
2024-07-02T15:36:48,722         |                     ~~~~~~~~^~~~~~~
2024-07-02T15:36:48,723   moleculekit/fileformats/xtc/src/xdrfile.cpp:1084:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-07-02T15:36:48,724    1084 |    countmjh++; if( countmjh> size3) { return -1; }
2024-07-02T15:36:48,724         |                    ~~~~~~~~^~~~~~~
2024-07-02T15:36:48,725   moleculekit/fileformats/xtc/src/xdrfile.cpp:1098:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-07-02T15:36:48,725    1098 |    countmjh++; if( countmjh> size3) { return -1; }
2024-07-02T15:36:48,725         |                    ~~~~~~~~^~~~~~~
2024-07-02T15:36:48,727   moleculekit/fileformats/xtc/src/xdrfile.cpp:1137:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-07-02T15:36:48,727    1137 |  while (smallidx < LASTIDX && magicints[smallidx] < mindiff)
2024-07-02T15:36:48,727         |                  ^
2024-07-02T15:36:48,728   moleculekit/fileformats/xtc/src/xdrfile.cpp:1143:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-07-02T15:36:48,728    1143 |  maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2024-07-02T15:36:48,728         |                   ^
2024-07-02T15:36:48,732   moleculekit/fileformats/xtc/src/xdrfile.cpp:1275:8: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-07-02T15:36:48,732    1275 |  if(tmp==(unsigned int)buf2[0])
2024-07-02T15:36:48,733         |     ~~~^~~~~~~~~~~~~~~~~~~~~~~
2024-07-02T15:36:48,733   moleculekit/fileformats/xtc/src/xdrfile.cpp:1001:6: warning: variable ‘errval’ set but not used [-Wunused-but-set-variable]
2024-07-02T15:36:48,733    1001 |  int errval;
2024-07-02T15:36:48,733         |      ^~~~~~
2024-07-02T15:36:48,736   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘int xdrfile_decompress_coord_double(double*, int*, double*, XDRFILE*)’:
2024-07-02T15:36:48,737   moleculekit/fileformats/xtc/src/xdrfile.cpp:1316:10: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-07-02T15:36:48,737    1316 |  if(size3>xfp->buf1size)
2024-07-02T15:36:48,737         |     ~~~~~^~~~~~~~~~~~~~
2024-07-02T15:36:48,739   moleculekit/fileformats/xtc/src/xdrfile.cpp:1377:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-07-02T15:36:48,739    1377 |  maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2024-07-02T15:36:48,740         |                   ^
2024-07-02T15:36:48,743   moleculekit/fileformats/xtc/src/xdrfile.cpp:1289:25: warning: variable ‘minidx’ set but not used [-Wunused-but-set-variable]
2024-07-02T15:36:48,743    1289 |  int smallidx,  maxidx, minidx;
2024-07-02T15:36:48,743         |                         ^~~~~~
2024-07-02T15:36:48,743   moleculekit/fileformats/xtc/src/xdrfile.cpp:1292:25: warning: variable ‘larger’ set but not used [-Wunused-but-set-variable]
2024-07-02T15:36:48,743    1292 |  int smallnum, smaller, larger, i, is_smaller, run;
2024-07-02T15:36:48,744         |                         ^~~~~~
2024-07-02T15:36:48,744   moleculekit/fileformats/xtc/src/xdrfile.cpp:1297:6: warning: unused variable ‘errval’ [-Wunused-variable]
2024-07-02T15:36:48,744    1297 |  int errval=1;
2024-07-02T15:36:48,744         |      ^~~~~~
2024-07-02T15:36:48,746   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘int xdrfile_compress_coord_double(double*, int, double, XDRFILE*)’:
2024-07-02T15:36:48,747   moleculekit/fileformats/xtc/src/xdrfile.cpp:1513:10: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-07-02T15:36:48,747    1513 |  if(size3>xfp->buf1size) {
2024-07-02T15:36:48,747         |     ~~~~~^~~~~~~~~~~~~~
2024-07-02T15:36:48,752   moleculekit/fileformats/xtc/src/xdrfile.cpp:1628:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-07-02T15:36:48,752    1628 |  while (smallidx < LASTIDX && magicints[smallidx] < mindiff) {
2024-07-02T15:36:48,752         |                  ^
2024-07-02T15:36:48,752   moleculekit/fileformats/xtc/src/xdrfile.cpp:1633:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-07-02T15:36:48,753    1633 |  maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2024-07-02T15:36:48,753         |                   ^
2024-07-02T15:36:48,756   moleculekit/fileformats/xtc/src/xdrfile.cpp:1743:8: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-07-02T15:36:48,756    1743 |  if(tmp==(unsigned int)buf2[0])
2024-07-02T15:36:48,756         |     ~~~^~~~~~~~~~~~~~~~~~~~~~~
2024-07-02T15:36:48,757   moleculekit/fileformats/xtc/src/xdrfile.cpp:1504:6: warning: variable ‘errval’ set but not used [-Wunused-but-set-variable]
2024-07-02T15:36:48,757    1504 |  int errval=1;
2024-07-02T15:36:48,757         |      ^~~~~~
2024-07-02T15:36:50,988   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/fileformats/xtc -Imoleculekit/fileformats/xtc/include/ -Imoleculekit/fileformats/xtc/ -I/tmp/pip-build-env-3gnvbl2f/overlay/lib/python3.9/site-packages/numpy/_core/include -I/usr/include/python3.9 -c moleculekit/fileformats/xtc/src/xdrfile_xtc.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/src/xdrfile_xtc.o
2024-07-02T15:36:51,241   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/fileformats/xtc -Imoleculekit/fileformats/xtc/include/ -Imoleculekit/fileformats/xtc/ -I/tmp/pip-build-env-3gnvbl2f/overlay/lib/python3.9/site-packages/numpy/_core/include -I/usr/include/python3.9 -c moleculekit/fileformats/xtc/src/xtc.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/src/xtc.o
2024-07-02T15:36:51,810   moleculekit/fileformats/xtc/src/xtc.cpp: In function ‘void xtc_read_new(char*, float*, float*, float*, int*, int, int)’:
2024-07-02T15:36:51,810   moleculekit/fileformats/xtc/src/xtc.cpp:234:23: warning: comparison of integer expressions of different signedness: ‘uint64_t’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare]
2024-07-02T15:36:51,811     234 |   for (aidx = 0; aidx < natoms; aidx++)
2024-07-02T15:36:51,811         |                  ~~~~~^~~~~~~~
2024-07-02T15:36:51,817   moleculekit/fileformats/xtc/src/xtc.cpp: In function ‘int xtc_write(char*, int, int, int*, float*, float*, float*)’:
2024-07-02T15:36:51,818   moleculekit/fileformats/xtc/src/xtc.cpp:436:16: warning: comparison of integer expressions of different signedness: ‘uint64_t’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare]
2024-07-02T15:36:51,818     436 |  for (f = 0; f < nframes; f++)
2024-07-02T15:36:51,818         |              ~~^~~~~~~~~
2024-07-02T15:36:51,819   moleculekit/fileformats/xtc/src/xtc.cpp:451:17: warning: comparison of integer expressions of different signedness: ‘uint64_t’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare]
2024-07-02T15:36:51,819     451 |   for (i = 0; i < natoms; i++)
2024-07-02T15:36:51,819         |               ~~^~~~~~~~
2024-07-02T15:36:51,822   moleculekit/fileformats/xtc/src/xtc.cpp: In function ‘void xtc_read_frame(char*, float*, float*, float*, int*, int, int, int, int)’:
2024-07-02T15:36:51,822   moleculekit/fileformats/xtc/src/xtc.cpp:541:24: warning: comparison of integer expressions of different signedness: ‘uint64_t’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare]
2024-07-02T15:36:51,822     541 |    for (aidx = 0; aidx < natoms; aidx++)
2024-07-02T15:36:51,823         |                   ~~~~~^~~~~~~~
2024-07-02T15:36:51,825   moleculekit/fileformats/xtc/src/xtc.cpp:610:24: warning: comparison of integer expressions of different signedness: ‘uint64_t’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare]
2024-07-02T15:36:51,826     610 |    for (aidx = 0; aidx < natoms; aidx++)
2024-07-02T15:36:51,826         |                   ~~~~~^~~~~~~~
2024-07-02T15:36:52,611   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/fileformats/xtc -Imoleculekit/fileformats/xtc/include/ -Imoleculekit/fileformats/xtc/ -I/tmp/pip-build-env-3gnvbl2f/overlay/lib/python3.9/site-packages/numpy/_core/include -I/usr/include/python3.9 -c moleculekit/fileformats/xtc/xtc.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/xtc.o
2024-07-02T15:36:52,847   In file included from /tmp/pip-build-env-3gnvbl2f/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarraytypes.h:1909,
2024-07-02T15:36:52,847                    from /tmp/pip-build-env-3gnvbl2f/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarrayobject.h:12,
2024-07-02T15:36:52,847                    from /tmp/pip-build-env-3gnvbl2f/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayobject.h:5,
2024-07-02T15:36:52,847                    from moleculekit/fileformats/xtc/xtc.cpp:1269:
2024-07-02T15:36:52,847   /tmp/pip-build-env-3gnvbl2f/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2024-07-02T15:36:52,848      17 | #warning "Using deprecated NumPy API, disable it with " \
2024-07-02T15:36:52,848         |  ^~~~~~~
2024-07-02T15:36:53,280   In file included from /tmp/pip-build-env-3gnvbl2f/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ufuncobject.h:4,
2024-07-02T15:36:53,280                    from moleculekit/fileformats/xtc/xtc.cpp:1273:
2024-07-02T15:36:53,280   /tmp/pip-build-env-3gnvbl2f/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/npy_math.h: In function ‘npy_longdouble npy_creall(npy_clongdouble)’:
2024-07-02T15:36:53,281   /tmp/pip-build-env-3gnvbl2f/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/npy_math.h:405:13: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
2024-07-02T15:36:53,281     405 |     return ((longdouble_t *) &z)[0];
2024-07-02T15:36:53,281         |            ~^~~~~~~~~~~~~~~~~~~~
2024-07-02T15:37:13,010   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/src/xdrfile.o build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/src/xdrfile_xtc.o build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/src/xtc.o build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/xtc.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/xtc.cpython-39-arm-linux-gnueabihf.so
2024-07-02T15:37:13,340   building 'moleculekit.trr' extension
2024-07-02T15:37:13,341   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/fileformats/xtc -Imoleculekit/fileformats/xtc/include/ -Imoleculekit/fileformats/xtc/ -I/tmp/pip-build-env-3gnvbl2f/overlay/lib/python3.9/site-packages/numpy/_core/include -I/usr/include/python3.9 -c moleculekit/fileformats/xtc/src/xdr_seek.c -o build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/src/xdr_seek.o
2024-07-02T15:37:13,458   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/fileformats/xtc -Imoleculekit/fileformats/xtc/include/ -Imoleculekit/fileformats/xtc/ -I/tmp/pip-build-env-3gnvbl2f/overlay/lib/python3.9/site-packages/numpy/_core/include -I/usr/include/python3.9 -c moleculekit/fileformats/xtc/src/xdrfile.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/src/xdrfile.o
2024-07-02T15:37:13,690   moleculekit/fileformats/xtc/src/xdrfile.cpp:66:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-07-02T15:37:13,690      66 |  "OK",
2024-07-02T15:37:13,690         |  ^~~~
2024-07-02T15:37:13,690   moleculekit/fileformats/xtc/src/xdrfile.cpp:67:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-07-02T15:37:13,690      67 |  "Header",
2024-07-02T15:37:13,690         |  ^~~~~~~~
2024-07-02T15:37:13,691   moleculekit/fileformats/xtc/src/xdrfile.cpp:68:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-07-02T15:37:13,691      68 |  "String",
2024-07-02T15:37:13,691         |  ^~~~~~~~
2024-07-02T15:37:13,691   moleculekit/fileformats/xtc/src/xdrfile.cpp:69:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-07-02T15:37:13,691      69 |  "Double",
2024-07-02T15:37:13,691         |  ^~~~~~~~
2024-07-02T15:37:13,692   moleculekit/fileformats/xtc/src/xdrfile.cpp:70:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-07-02T15:37:13,692      70 |  "Integer",
2024-07-02T15:37:13,692         |  ^~~~~~~~~
2024-07-02T15:37:13,692   moleculekit/fileformats/xtc/src/xdrfile.cpp:71:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-07-02T15:37:13,692      71 |  "Float",
2024-07-02T15:37:13,692         |  ^~~~~~~
2024-07-02T15:37:13,692   moleculekit/fileformats/xtc/src/xdrfile.cpp:72:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-07-02T15:37:13,693      72 |  "Unsigned integer",
2024-07-02T15:37:13,693         |  ^~~~~~~~~~~~~~~~~~
2024-07-02T15:37:13,693   moleculekit/fileformats/xtc/src/xdrfile.cpp:73:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-07-02T15:37:13,693      73 |  "Compressed 3D coordinate",
2024-07-02T15:37:13,693         |  ^~~~~~~~~~~~~~~~~~~~~~~~~~
2024-07-02T15:37:13,693   moleculekit/fileformats/xtc/src/xdrfile.cpp:74:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-07-02T15:37:13,693      74 |  "Closing file",
2024-07-02T15:37:13,693         |  ^~~~~~~~~~~~~~
2024-07-02T15:37:13,694   moleculekit/fileformats/xtc/src/xdrfile.cpp:75:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-07-02T15:37:13,694      75 |  "Magic number",
2024-07-02T15:37:13,694         |  ^~~~~~~~~~~~~~
2024-07-02T15:37:13,694   moleculekit/fileformats/xtc/src/xdrfile.cpp:76:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-07-02T15:37:13,694      76 |  "Not enough memory",
2024-07-02T15:37:13,694         |  ^~~~~~~~~~~~~~~~~~~
2024-07-02T15:37:13,694   moleculekit/fileformats/xtc/src/xdrfile.cpp:77:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-07-02T15:37:13,695      77 |  "End of file",
2024-07-02T15:37:13,695         |  ^~~~~~~~~~~~~
2024-07-02T15:37:13,695   moleculekit/fileformats/xtc/src/xdrfile.cpp:78:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-07-02T15:37:13,695      78 |  "File not found"
2024-07-02T15:37:13,695         |  ^~~~~~~~~~~~~~~~
2024-07-02T15:37:13,699   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘int sizeofint(int)’:
2024-07-02T15:37:13,699   moleculekit/fileformats/xtc/src/xdrfile.cpp:459:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-07-02T15:37:13,699     459 |     while (size >= num && num_of_bits < 32)
2024-07-02T15:37:13,700         |            ~~~~~^~~~~~
2024-07-02T15:37:13,700   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘int sizeofints(int, unsigned int*)’:
2024-07-02T15:37:13,700   moleculekit/fileformats/xtc/src/xdrfile.cpp:505:32: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-07-02T15:37:13,700     505 |     while (bytes[num_of_bytes] >= num)
2024-07-02T15:37:13,700         |            ~~~~~~~~~~~~~~~~~~~~^~~~~~
2024-07-02T15:37:13,702   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘void encodeints(int*, int, int, unsigned int*, unsigned int*)’:
2024-07-02T15:37:13,703   moleculekit/fileformats/xtc/src/xdrfile.cpp:614:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-07-02T15:37:13,703     614 |     if (num_of_bits >= num_of_bytes * 8)
2024-07-02T15:37:13,703         |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
2024-07-02T15:37:13,703   moleculekit/fileformats/xtc/src/xdrfile.cpp:616:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-07-02T15:37:13,703     616 |   for (i = 0; i < num_of_bytes; i++)
2024-07-02T15:37:13,703         |               ~~^~~~~~~~~~~~~~
2024-07-02T15:37:13,703   moleculekit/fileformats/xtc/src/xdrfile.cpp:624:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-07-02T15:37:13,704     624 |   for (i = 0; i < num_of_bytes-1; i++)
2024-07-02T15:37:13,704         |               ~~^~~~~~~~~~~~~~~~
2024-07-02T15:37:13,704   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘int decodebits(int*, int)’:
2024-07-02T15:37:13,704   moleculekit/fileformats/xtc/src/xdrfile.cpp:664:16: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-07-02T15:37:13,704     664 |   if (lastbits < num_of_bits)
2024-07-02T15:37:13,704         |       ~~~~~~~~~^~~~~~~~~~~~~
2024-07-02T15:37:13,707   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘int xdrfile_decompress_coord_float(float*, int*, float*, XDRFILE*)’:
2024-07-02T15:37:13,708   moleculekit/fileformats/xtc/src/xdrfile.cpp:785:10: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-07-02T15:37:13,708     785 |  if(size3>xfp->buf1size)
2024-07-02T15:37:13,708         |     ~~~~~^~~~~~~~~~~~~~
2024-07-02T15:37:13,709   moleculekit/fileformats/xtc/src/xdrfile.cpp:842:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-07-02T15:37:13,710     842 |  maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2024-07-02T15:37:13,710         |                   ^
2024-07-02T15:37:13,712   moleculekit/fileformats/xtc/src/xdrfile.cpp:932:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-07-02T15:37:13,712     932 |     if(countmjh >= size3 ) { return -1; }
2024-07-02T15:37:13,712         |        ~~~~~~~~~^~~~~~~~
2024-07-02T15:37:13,713   moleculekit/fileformats/xtc/src/xdrfile.cpp:935:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-07-02T15:37:13,713     935 |     if(countmjh >= size3 ) { return -1; }
2024-07-02T15:37:13,713         |        ~~~~~~~~~^~~~~~~~
2024-07-02T15:37:13,713   moleculekit/fileformats/xtc/src/xdrfile.cpp:938:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-07-02T15:37:13,713     938 |     if(countmjh >= size3 ) { return -1; }
2024-07-02T15:37:13,713         |        ~~~~~~~~~^~~~~~~~
2024-07-02T15:37:13,713   moleculekit/fileformats/xtc/src/xdrfile.cpp:945:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-07-02T15:37:13,714     945 |     if(countmjh >= size3 ) { return -1; }
2024-07-02T15:37:13,714         |        ~~~~~~~~~^~~~~~~~
2024-07-02T15:37:13,714   moleculekit/fileformats/xtc/src/xdrfile.cpp:948:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-07-02T15:37:13,714     948 |     if(countmjh >= size3 ) { return -1; }
2024-07-02T15:37:13,714         |        ~~~~~~~~~^~~~~~~~
2024-07-02T15:37:13,714   moleculekit/fileformats/xtc/src/xdrfile.cpp:951:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-07-02T15:37:13,714     951 |     if(countmjh >= size3 ) { return -1; }
2024-07-02T15:37:13,714         |        ~~~~~~~~~^~~~~~~~
2024-07-02T15:37:13,715   moleculekit/fileformats/xtc/src/xdrfile.cpp:756:17: warning: variable ‘minidx’ set but not used [-Wunused-but-set-variable]
2024-07-02T15:37:13,715     756 |  int smallidx,  minidx, maxidx;
2024-07-02T15:37:13,715         |                 ^~~~~~
2024-07-02T15:37:13,715   moleculekit/fileformats/xtc/src/xdrfile.cpp:759:25: warning: variable ‘larger’ set but not used [-Wunused-but-set-variable]
2024-07-02T15:37:13,715     759 |  int smallnum, smaller, larger, i, is_smaller, run;
2024-07-02T15:37:13,715         |                         ^~~~~~
2024-07-02T15:37:13,715   moleculekit/fileformats/xtc/src/xdrfile.cpp:763:6: warning: unused variable ‘errval’ [-Wunused-variable]
2024-07-02T15:37:13,715     763 |  int errval=1;
2024-07-02T15:37:13,716         |      ^~~~~~
2024-07-02T15:37:13,716   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘int xdrfile_compress_coord_float(float*, int, float, XDRFILE*)’:
2024-07-02T15:37:13,717   moleculekit/fileformats/xtc/src/xdrfile.cpp:1011:10: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-07-02T15:37:13,717    1011 |  if(size3>xfp->buf1size)
2024-07-02T15:37:13,717         |     ~~~~~^~~~~~~~~~~~~~
2024-07-02T15:37:13,718   moleculekit/fileformats/xtc/src/xdrfile.cpp:1068:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-07-02T15:37:13,719    1068 |     countmjh++; if( countmjh> size3) { return -1; }
2024-07-02T15:37:13,719         |                     ~~~~~~~~^~~~~~~
2024-07-02T15:37:13,719   moleculekit/fileformats/xtc/src/xdrfile.cpp:1084:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-07-02T15:37:13,719    1084 |    countmjh++; if( countmjh> size3) { return -1; }
2024-07-02T15:37:13,719         |                    ~~~~~~~~^~~~~~~
2024-07-02T15:37:13,720   moleculekit/fileformats/xtc/src/xdrfile.cpp:1098:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-07-02T15:37:13,720    1098 |    countmjh++; if( countmjh> size3) { return -1; }
2024-07-02T15:37:13,720         |                    ~~~~~~~~^~~~~~~
2024-07-02T15:37:13,721   moleculekit/fileformats/xtc/src/xdrfile.cpp:1137:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-07-02T15:37:13,722    1137 |  while (smallidx < LASTIDX && magicints[smallidx] < mindiff)
2024-07-02T15:37:13,722         |                  ^
2024-07-02T15:37:13,722   moleculekit/fileformats/xtc/src/xdrfile.cpp:1143:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-07-02T15:37:13,722    1143 |  maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2024-07-02T15:37:13,722         |                   ^
2024-07-02T15:37:13,726   moleculekit/fileformats/xtc/src/xdrfile.cpp:1275:8: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-07-02T15:37:13,726    1275 |  if(tmp==(unsigned int)buf2[0])
2024-07-02T15:37:13,726         |     ~~~^~~~~~~~~~~~~~~~~~~~~~~
2024-07-02T15:37:13,726   moleculekit/fileformats/xtc/src/xdrfile.cpp:1001:6: warning: variable ‘errval’ set but not used [-Wunused-but-set-variable]
2024-07-02T15:37:13,726    1001 |  int errval;
2024-07-02T15:37:13,726         |      ^~~~~~
2024-07-02T15:37:13,729   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘int xdrfile_decompress_coord_double(double*, int*, double*, XDRFILE*)’:
2024-07-02T15:37:13,729   moleculekit/fileformats/xtc/src/xdrfile.cpp:1316:10: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-07-02T15:37:13,729    1316 |  if(size3>xfp->buf1size)
2024-07-02T15:37:13,729         |     ~~~~~^~~~~~~~~~~~~~
2024-07-02T15:37:13,731   moleculekit/fileformats/xtc/src/xdrfile.cpp:1377:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-07-02T15:37:13,731    1377 |  maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2024-07-02T15:37:13,731         |                   ^
2024-07-02T15:37:13,734   moleculekit/fileformats/xtc/src/xdrfile.cpp:1289:25: warning: variable ‘minidx’ set but not used [-Wunused-but-set-variable]
2024-07-02T15:37:13,734    1289 |  int smallidx,  maxidx, minidx;
2024-07-02T15:37:13,734         |                         ^~~~~~
2024-07-02T15:37:13,734   moleculekit/fileformats/xtc/src/xdrfile.cpp:1292:25: warning: variable ‘larger’ set but not used [-Wunused-but-set-variable]
2024-07-02T15:37:13,734    1292 |  int smallnum, smaller, larger, i, is_smaller, run;
2024-07-02T15:37:13,735         |                         ^~~~~~
2024-07-02T15:37:13,735   moleculekit/fileformats/xtc/src/xdrfile.cpp:1297:6: warning: unused variable ‘errval’ [-Wunused-variable]
2024-07-02T15:37:13,735    1297 |  int errval=1;
2024-07-02T15:37:13,735         |      ^~~~~~
2024-07-02T15:37:13,736   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘int xdrfile_compress_coord_double(double*, int, double, XDRFILE*)’:
2024-07-02T15:37:13,736   moleculekit/fileformats/xtc/src/xdrfile.cpp:1513:10: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-07-02T15:37:13,736    1513 |  if(size3>xfp->buf1size) {
2024-07-02T15:37:13,737         |     ~~~~~^~~~~~~~~~~~~~
2024-07-02T15:37:13,740   moleculekit/fileformats/xtc/src/xdrfile.cpp:1628:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-07-02T15:37:13,741    1628 |  while (smallidx < LASTIDX && magicints[smallidx] < mindiff) {
2024-07-02T15:37:13,741         |                  ^
2024-07-02T15:37:13,741   moleculekit/fileformats/xtc/src/xdrfile.cpp:1633:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-07-02T15:37:13,741    1633 |  maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2024-07-02T15:37:13,741         |                   ^
2024-07-02T15:37:13,745   moleculekit/fileformats/xtc/src/xdrfile.cpp:1743:8: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-07-02T15:37:13,745    1743 |  if(tmp==(unsigned int)buf2[0])
2024-07-02T15:37:13,745         |     ~~~^~~~~~~~~~~~~~~~~~~~~~~
2024-07-02T15:37:13,745   moleculekit/fileformats/xtc/src/xdrfile.cpp:1504:6: warning: variable ‘errval’ set but not used [-Wunused-but-set-variable]
2024-07-02T15:37:13,745    1504 |  int errval=1;
2024-07-02T15:37:13,745         |      ^~~~~~
2024-07-02T15:37:15,966   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/fileformats/xtc -Imoleculekit/fileformats/xtc/include/ -Imoleculekit/fileformats/xtc/ -I/tmp/pip-build-env-3gnvbl2f/overlay/lib/python3.9/site-packages/numpy/_core/include -I/usr/include/python3.9 -c moleculekit/fileformats/xtc/src/xdrfile_trr.c -o build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/src/xdrfile_trr.o
2024-07-02T15:37:16,060   moleculekit/fileformats/xtc/src/xdrfile_trr.c: In function ‘do_trnheader’:
2024-07-02T15:37:16,060   moleculekit/fileformats/xtc/src/xdrfile_trr.c:111:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare]
2024-07-02T15:37:16,061     111 |         if (slen != strlen(version)+1)
2024-07-02T15:37:16,061         |                  ^~
2024-07-02T15:37:16,061   moleculekit/fileformats/xtc/src/xdrfile_trr.c:121:46: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare]
2024-07-02T15:37:16,061     121 |         if (xdrfile_write_string(version,xd) != (strlen(version)+1) )
2024-07-02T15:37:16,062         |                                              ^~
2024-07-02T15:37:16,634   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/fileformats/xtc -Imoleculekit/fileformats/xtc/include/ -Imoleculekit/fileformats/xtc/ -I/tmp/pip-build-env-3gnvbl2f/overlay/lib/python3.9/site-packages/numpy/_core/include -I/usr/include/python3.9 -c moleculekit/fileformats/xtc/trr.c -o build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/trr.o
2024-07-02T15:37:16,965   In file included from /tmp/pip-build-env-3gnvbl2f/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarraytypes.h:1909,
2024-07-02T15:37:16,965                    from /tmp/pip-build-env-3gnvbl2f/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarrayobject.h:12,
2024-07-02T15:37:16,966                    from /tmp/pip-build-env-3gnvbl2f/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayobject.h:5,
2024-07-02T15:37:16,966                    from moleculekit/fileformats/xtc/trr.c:1261:
2024-07-02T15:37:16,966   /tmp/pip-build-env-3gnvbl2f/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2024-07-02T15:37:16,966      17 | #warning "Using deprecated NumPy API, disable it with " \
2024-07-02T15:37:16,966         |  ^~~~~~~
2024-07-02T15:37:17,572   moleculekit/fileformats/xtc/trr.c: In function ‘__pyx_pf_11moleculekit_3trr_17TRRTrajectoryFile_22_calc_len_and_offsets’:
2024-07-02T15:37:17,581   moleculekit/fileformats/xtc/trr.c:16804:37: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘Py_ssize_t’ {aka ‘int’} [-Wsign-compare]
2024-07-02T15:37:17,581   16804 |       __pyx_t_6 = (__pyx_v_n_frames == __pyx_t_14);
2024-07-02T15:37:17,582         |                                     ^~
2024-07-02T15:37:37,949   moleculekit/fileformats/xtc/trr.c: In function ‘__pyx_pw_11moleculekit_3trr_17TRRTrajectoryFile_17_write’:
2024-07-02T15:37:37,949   moleculekit/fileformats/xtc/trr.c:1163:40: warning: ‘__pyx_v_status’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2024-07-02T15:37:37,950    1163 |   #define PyInt_FromLong               PyLong_FromLong
2024-07-02T15:37:37,950         |                                        ^~~~~~~~~~~~~~~
2024-07-02T15:37:37,958   moleculekit/fileformats/xtc/trr.c:14714:7: note: ‘__pyx_v_status’ was declared here
2024-07-02T15:37:37,959   14714 |   int __pyx_v_status;
2024-07-02T15:37:37,959         |       ^~~~~~~~~~~~~~
2024-07-02T15:37:48,303   moleculekit/fileformats/xtc/trr.c: In function ‘__pyx_pf_11moleculekit_3trr_17TRRTrajectoryFile_12_read’:
2024-07-02T15:37:48,310   moleculekit/fileformats/xtc/trr.c:12013:19: warning: ‘__pyx_pybuffernd_forces.diminfo[2].shape’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2024-07-02T15:37:48,310   12013 |         } else if (unlikely(__pyx_t_29 >= __pyx_pybuffernd_forces.diminfo[2].shape)) __pyx_t_4 = 2;
2024-07-02T15:37:48,310         |                   ^
2024-07-02T15:37:48,317   moleculekit/fileformats/xtc/trr.c:12009:19: warning: ‘__pyx_pybuffernd_forces.diminfo[1].shape’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2024-07-02T15:37:48,318   12009 |         } else if (unlikely(__pyx_t_30 >= __pyx_pybuffernd_forces.diminfo[1].shape)) __pyx_t_4 = 1;
2024-07-02T15:37:48,318         |                   ^
2024-07-02T15:37:48,318   moleculekit/fileformats/xtc/trr.c:2485:95: warning: ‘__pyx_pybuffernd_forces.diminfo[0].strides’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2024-07-02T15:37:48,319    2485 | #define __Pyx_BufPtrCContig3d(type, buf, i0, s0, i1, s1, i2, s2) ((type)((char*)buf + i0 * s0 + i1 * s1) + i2)
2024-07-02T15:37:48,319         |                                                                                               ^
2024-07-02T15:37:48,324   moleculekit/fileformats/xtc/trr.c:10545:21: note: ‘__pyx_pybuffernd_forces.diminfo[0].strides’ was declared here
2024-07-02T15:37:48,325   10545 |   __Pyx_LocalBuf_ND __pyx_pybuffernd_forces;
2024-07-02T15:37:48,325         |                     ^~~~~~~~~~~~~~~~~~~~~~~
2024-07-02T15:37:48,331   moleculekit/fileformats/xtc/trr.c:12003:59: warning: ‘__pyx_pybuffernd_forces.diminfo[0].shape’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2024-07-02T15:37:48,331   12003 |           __pyx_t_28 += __pyx_pybuffernd_forces.diminfo[0].shape;
2024-07-02T15:37:48,331         |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~
2024-07-02T15:37:48,338   moleculekit/fileformats/xtc/trr.c:11956:19: warning: ‘__pyx_pybuffernd_vel.diminfo[2].shape’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2024-07-02T15:37:48,338   11956 |         } else if (unlikely(__pyx_t_30 >= __pyx_pybuffernd_vel.diminfo[2].shape)) __pyx_t_4 = 2;
2024-07-02T15:37:48,338         |                   ^
2024-07-02T15:37:48,345   moleculekit/fileformats/xtc/trr.c:11952:19: warning: ‘__pyx_pybuffernd_vel.diminfo[1].shape’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2024-07-02T15:37:48,345   11952 |         } else if (unlikely(__pyx_t_29 >= __pyx_pybuffernd_vel.diminfo[1].shape)) __pyx_t_4 = 1;
2024-07-02T15:37:48,345         |                   ^
2024-07-02T15:37:48,346   moleculekit/fileformats/xtc/trr.c:2485:95: warning: ‘__pyx_pybuffernd_vel.diminfo[0].strides’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2024-07-02T15:37:48,346    2485 | #define __Pyx_BufPtrCContig3d(type, buf, i0, s0, i1, s1, i2, s2) ((type)((char*)buf + i0 * s0 + i1 * s1) + i2)
2024-07-02T15:37:48,346         |                                                                                               ^
2024-07-02T15:37:48,352   moleculekit/fileformats/xtc/trr.c:10561:21: note: ‘__pyx_pybuffernd_vel.diminfo[0].strides’ was declared here
2024-07-02T15:37:48,352   10561 |   __Pyx_LocalBuf_ND __pyx_pybuffernd_vel;
2024-07-02T15:37:48,353         |                     ^~~~~~~~~~~~~~~~~~~~
2024-07-02T15:37:48,358   moleculekit/fileformats/xtc/trr.c:11946:56: warning: ‘__pyx_pybuffernd_vel.diminfo[0].shape’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2024-07-02T15:37:48,359   11946 |           __pyx_t_28 += __pyx_pybuffernd_vel.diminfo[0].shape;
2024-07-02T15:37:48,359         |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~
2024-07-02T15:37:48,365   moleculekit/fileformats/xtc/trr.c:12345:17: warning: ‘__pyx_pybuffernd_xyz_buffer.diminfo[1].shape’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2024-07-02T15:37:48,365   12345 |       } else if (unlikely(__pyx_t_29 >= __pyx_pybuffernd_xyz_buffer.diminfo[1].shape)) __pyx_t_4 = 1;
2024-07-02T15:37:48,365         |                 ^
2024-07-02T15:37:48,372   moleculekit/fileformats/xtc/trr.c:12341:17: warning: ‘__pyx_pybuffernd_xyz_buffer.diminfo[0].shape’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2024-07-02T15:37:48,372   12341 |       } else if (unlikely(__pyx_t_30 >= __pyx_pybuffernd_xyz_buffer.diminfo[0].shape)) __pyx_t_4 = 0;
2024-07-02T15:37:48,372         |                 ^
2024-07-02T15:37:48,379   moleculekit/fileformats/xtc/trr.c:12186:19: warning: ‘__pyx_pybuffernd_vel_buffer.diminfo[1].shape’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2024-07-02T15:37:48,380   12186 |         } else if (unlikely(__pyx_t_35 >= __pyx_pybuffernd_vel_buffer.diminfo[1].shape)) __pyx_t_4 = 1;
2024-07-02T15:37:48,380         |                   ^
2024-07-02T15:37:48,387   moleculekit/fileformats/xtc/trr.c:12182:19: warning: ‘__pyx_pybuffernd_vel_buffer.diminfo[0].shape’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2024-07-02T15:37:48,387   12182 |         } else if (unlikely(__pyx_t_36 >= __pyx_pybuffernd_vel_buffer.diminfo[0].shape)) __pyx_t_4 = 0;
2024-07-02T15:37:48,387         |                   ^
2024-07-02T15:37:48,393   moleculekit/fileformats/xtc/trr.c:12238:19: warning: ‘__pyx_pybuffernd_forces_buffer.diminfo[1].shape’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2024-07-02T15:37:48,393   12238 |         } else if (unlikely(__pyx_t_36 >= __pyx_pybuffernd_forces_buffer.diminfo[1].shape)) __pyx_t_4 = 1;
2024-07-02T15:37:48,393         |                   ^
2024-07-02T15:37:48,400   moleculekit/fileformats/xtc/trr.c:12234:19: warning: ‘__pyx_pybuffernd_forces_buffer.diminfo[0].shape’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2024-07-02T15:37:48,401   12234 |         } else if (unlikely(__pyx_t_35 >= __pyx_pybuffernd_forces_buffer.diminfo[0].shape)) __pyx_t_4 = 0;
2024-07-02T15:37:48,401         |                   ^
2024-07-02T15:37:54,855   arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/src/xdr_seek.o build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/src/xdrfile.o build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/src/xdrfile_trr.o build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/trr.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/trr.cpython-39-arm-linux-gnueabihf.so
2024-07-02T15:37:55,037   building 'moleculekit.dcd' extension
2024-07-02T15:37:55,038   creating build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/dcd
2024-07-02T15:37:55,039   creating build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/dcd/src
2024-07-02T15:37:55,041   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/fileformats/dcd -Imoleculekit/fileformats/dcd/include/ -Imoleculekit/fileformats/dcd/ -I/tmp/pip-build-env-3gnvbl2f/overlay/lib/python3.9/site-packages/numpy/_core/include -I/usr/include/python3.9 -c moleculekit/fileformats/dcd/dcd.c -o build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/dcd/dcd.o
2024-07-02T15:37:55,375   In file included from /tmp/pip-build-env-3gnvbl2f/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarraytypes.h:1909,
2024-07-02T15:37:55,375                    from /tmp/pip-build-env-3gnvbl2f/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarrayobject.h:12,
2024-07-02T15:37:55,375                    from /tmp/pip-build-env-3gnvbl2f/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayobject.h:5,
2024-07-02T15:37:55,375                    from moleculekit/fileformats/dcd/dcd.c:1256:
2024-07-02T15:37:55,375   /tmp/pip-build-env-3gnvbl2f/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2024-07-02T15:37:55,376      17 | #warning "Using deprecated NumPy API, disable it with " \
2024-07-02T15:37:55,376         |  ^~~~~~~
2024-07-02T15:37:56,398   In file included from moleculekit/fileformats/dcd/include/dcdplugin.h:1,
2024-07-02T15:37:56,398                    from moleculekit/fileformats/dcd/dcd.c:1262:
2024-07-02T15:37:56,399   moleculekit/fileformats/dcd/include/fastio.h:474:12: warning: ‘fio_write_str’ defined but not used [-Wunused-function]
2024-07-02T15:37:56,399     474 | static int fio_write_str(fio_fd fd, const char *str) {
2024-07-02T15:37:56,399         |            ^~~~~~~~~~~~~
2024-07-02T15:37:56,399   moleculekit/fileformats/dcd/include/fastio.h:470:12: warning: ‘fio_read_int32’ defined but not used [-Wunused-function]
2024-07-02T15:37:56,399     470 | static int fio_read_int32(fio_fd fd, int *i) {
2024-07-02T15:37:56,399         |            ^~~~~~~~~~~~~~
2024-07-02T15:37:56,400   moleculekit/fileformats/dcd/include/fastio.h:466:12: warning: ‘fio_write_int32’ defined but not used [-Wunused-function]
2024-07-02T15:37:56,400     466 | static int fio_write_int32(fio_fd fd, int i) {
2024-07-02T15:37:56,400         |            ^~~~~~~~~~~~~~~
2024-07-02T15:37:56,400   moleculekit/fileformats/dcd/include/fastio.h:457:19: warning: ‘fio_ftell’ defined but not used [-Wunused-function]
2024-07-02T15:37:56,400     457 | static fio_size_t fio_ftell(fio_fd fd) {
2024-07-02T15:37:56,400         |                   ^~~~~~~~~
2024-07-02T15:37:56,401   moleculekit/fileformats/dcd/include/fastio.h:450:19: warning: ‘fio_fseek’ defined but not used [-Wunused-function]
2024-07-02T15:37:56,401     450 | static fio_size_t fio_fseek(fio_fd fd, fio_size_t offset, int whence) {
2024-07-02T15:37:56,401         |                   ^~~~~~~~~
2024-07-02T15:37:56,401   moleculekit/fileformats/dcd/include/fastio.h:415:19: warning: ‘fio_readv’ defined but not used [-Wunused-function]
2024-07-02T15:37:56,401     415 | static fio_size_t fio_readv(fio_fd fd, const fio_iovec * iov, int iovcnt) {
2024-07-02T15:37:56,401         |                   ^~~~~~~~~
2024-07-02T15:37:56,402   moleculekit/fileformats/dcd/include/fastio.h:394:12: warning: ‘fio_fclose’ defined but not used [-Wunused-function]
2024-07-02T15:37:56,402     394 | static int fio_fclose(fio_fd fd) {
2024-07-02T15:37:56,402         |            ^~~~~~~~~~
2024-07-02T15:37:56,402   moleculekit/fileformats/dcd/include/fastio.h:366:12: warning: ‘fio_open’ defined but not used [-Wunused-function]
2024-07-02T15:37:56,402     366 | static int fio_open(const char *filename, int mode, fio_fd *fd) {
2024-07-02T15:37:56,402         |            ^~~~~~~~
2024-07-02T15:38:09,026   moleculekit/fileformats/dcd/dcd.c: In function ‘__pyx_pf_11moleculekit_3dcd_17DCDTrajectoryFile_18read’:
2024-07-02T15:38:09,027   moleculekit/fileformats/dcd/dcd.c:1158:40: warning: ‘__pyx_v_i’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2024-07-02T15:38:09,027    1158 |   #define PyInt_FromLong               PyLong_FromLong
2024-07-02T15:38:09,027         |                                        ^~~~~~~~~~~~~~~
2024-07-02T15:38:09,032   moleculekit/fileformats/dcd/dcd.c:8476:7: note: ‘__pyx_v_i’ was declared here
2024-07-02T15:38:09,032    8476 |   int __pyx_v_i;
2024-07-02T15:38:09,032         |       ^~~~~~~~~
2024-07-02T15:38:12,272   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/fileformats/dcd -Imoleculekit/fileformats/dcd/include/ -Imoleculekit/fileformats/dcd/ -I/tmp/pip-build-env-3gnvbl2f/overlay/lib/python3.9/site-packages/numpy/_core/include -I/usr/include/python3.9 -c moleculekit/fileformats/dcd/src/dcdplugin.c -o build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/dcd/src/dcdplugin.o
2024-07-02T15:38:12,456   moleculekit/fileformats/dcd/src/dcdplugin.c: In function ‘read_dcdheader’:
2024-07-02T15:38:12,457   moleculekit/fileformats/dcd/src/dcdplugin.c:150:55: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-07-02T15:38:12,457     150 |   else if (input_integer[0] == 84 && input_integer[1] == dcdcordmagic)
2024-07-02T15:38:12,457         |                                                       ^~
2024-07-02T15:38:12,457   moleculekit/fileformats/dcd/src/dcdplugin.c:173:54: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-07-02T15:38:12,457     173 |       if (input_integer[0] == 84 && input_integer[1] == dcdcordmagic)
2024-07-02T15:38:12,457         |                                                      ^~
2024-07-02T15:38:12,458   moleculekit/fileformats/dcd/src/dcdplugin.c:194:26: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-07-02T15:38:12,458     194 |     if (input_integer[0] != dcdcordmagic)
2024-07-02T15:38:12,458         |                          ^~
2024-07-02T15:38:12,461   moleculekit/fileformats/dcd/src/dcdplugin.c:409:47: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-07-02T15:38:12,461     409 |     if ((input_integer[0] + input_integer[1]) != ((*N) - (*NAMNF)) * 4)
2024-07-02T15:38:12,461         |                                               ^~
2024-07-02T15:38:12,461   moleculekit/fileformats/dcd/src/dcdplugin.c:428:47: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-07-02T15:38:12,462     428 |     if ((input_integer[0] + input_integer[1]) != ((*N) - (*NAMNF)) * 4)
2024-07-02T15:38:12,462         |                                               ^~
2024-07-02T15:38:12,465   moleculekit/fileformats/dcd/src/dcdplugin.c: In function ‘read_dcdstep’:
2024-07-02T15:38:12,466   moleculekit/fileformats/dcd/src/dcdplugin.c:651:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-07-02T15:38:12,466     651 |         if (tmpbuf[i] != sizeof(float) * N)
2024-07-02T15:38:12,466         |                       ^~
2024-07-02T15:38:12,466   moleculekit/fileformats/dcd/src/dcdplugin.c:659:49: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-07-02T15:38:12,466     659 |         if ((tmpbuf[2 * i] + tmpbuf[2 * i + 1]) != sizeof(float) * N)
2024-07-02T15:38:12,466         |                                                 ^~
2024-07-02T15:38:12,489   In file included from moleculekit/fileformats/dcd/src/dcdplugin.c:55:
2024-07-02T15:38:12,489   At top level:
2024-07-02T15:38:12,489   moleculekit/fileformats/dcd/include/endianswap.h:96:13: warning: ‘swap2_aligned’ defined but not used [-Wunused-function]
2024-07-02T15:38:12,489      96 | static void swap2_aligned(void *v, long ndata) {
2024-07-02T15:38:12,490         |             ^~~~~~~~~~~~~
2024-07-02T15:38:12,490   moleculekit/fileformats/dcd/include/endianswap.h:32:13: warning: ‘swap2_unaligned’ defined but not used [-Wunused-function]
2024-07-02T15:38:12,490      32 | static void swap2_unaligned(void *v, long ndata) {
2024-07-02T15:38:12,490         |             ^~~~~~~~~~~~~~~
2024-07-02T15:38:12,490   In file included from moleculekit/fileformats/dcd/src/dcdplugin.c:46:
2024-07-02T15:38:12,490   moleculekit/fileformats/dcd/include/fastio.h:474:12: warning: ‘fio_write_str’ defined but not used [-Wunused-function]
2024-07-02T15:38:12,490     474 | static int fio_write_str(fio_fd fd, const char *str) {
2024-07-02T15:38:12,491         |            ^~~~~~~~~~~~~
2024-07-02T15:38:12,491   moleculekit/fileformats/dcd/include/fastio.h:470:12: warning: ‘fio_read_int32’ defined but not used [-Wunused-function]
2024-07-02T15:38:12,491     470 | static int fio_read_int32(fio_fd fd, int *i) {
2024-07-02T15:38:12,491         |            ^~~~~~~~~~~~~~
2024-07-02T15:38:13,599   arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/dcd/dcd.o build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/dcd/src/dcdplugin.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/dcd.cpython-39-arm-linux-gnueabihf.so
2024-07-02T15:38:13,746   building 'moleculekit.binpos' extension
2024-07-02T15:38:13,747   creating build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/binpos
2024-07-02T15:38:13,748   creating build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/binpos/src
2024-07-02T15:38:13,749   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/fileformats/binpos -Imoleculekit/fileformats/binpos/include/ -Imoleculekit/fileformats/binpos/ -I/tmp/pip-build-env-3gnvbl2f/overlay/lib/python3.9/site-packages/numpy/_core/include -I/usr/include/python3.9 -c moleculekit/fileformats/binpos/binpos.c -o build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/binpos/binpos.o
2024-07-02T15:38:14,096   In file included from /tmp/pip-build-env-3gnvbl2f/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarraytypes.h:1909,
2024-07-02T15:38:14,096                    from /tmp/pip-build-env-3gnvbl2f/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarrayobject.h:12,
2024-07-02T15:38:14,096                    from /tmp/pip-build-env-3gnvbl2f/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayobject.h:5,
2024-07-02T15:38:14,096                    from moleculekit/fileformats/binpos/binpos.c:1256:
2024-07-02T15:38:14,096   /tmp/pip-build-env-3gnvbl2f/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2024-07-02T15:38:14,097      17 | #warning "Using deprecated NumPy API, disable it with " \
2024-07-02T15:38:14,097         |  ^~~~~~~
2024-07-02T15:38:27,584   moleculekit/fileformats/binpos/binpos.c: In function ‘__pyx_pw_11moleculekit_6binpos_20BINPOSTrajectoryFile_7_read’:
2024-07-02T15:38:27,589   moleculekit/fileformats/binpos/binpos.c:8499:6: warning: ‘__pyx_v_status’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2024-07-02T15:38:27,589    8499 |   if (__pyx_t_1) {
2024-07-02T15:38:27,590         |      ^
2024-07-02T15:38:27,594   moleculekit/fileformats/binpos/binpos.c:7976:7: note: ‘__pyx_v_status’ was declared here
2024-07-02T15:38:27,594    7976 |   int __pyx_v_status;
2024-07-02T15:38:27,594         |       ^~~~~~~~~~~~~~
2024-07-02T15:38:27,594   moleculekit/fileformats/binpos/binpos.c:1158:40: warning: ‘__pyx_v_i’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2024-07-02T15:38:27,594    1158 |   #define PyInt_FromLong               PyLong_FromLong
2024-07-02T15:38:27,595         |                                        ^~~~~~~~~~~~~~~
2024-07-02T15:38:27,599   moleculekit/fileformats/binpos/binpos.c:7973:7: note: ‘__pyx_v_i’ was declared here
2024-07-02T15:38:27,599    7973 |   int __pyx_v_i;
2024-07-02T15:38:27,599         |       ^~~~~~~~~
2024-07-02T15:38:29,856   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/fileformats/binpos -Imoleculekit/fileformats/binpos/include/ -Imoleculekit/fileformats/binpos/ -I/tmp/pip-build-env-3gnvbl2f/overlay/lib/python3.9/site-packages/numpy/_core/include -I/usr/include/python3.9 -c moleculekit/fileformats/binpos/src/binposplugin.c -o build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/binpos/src/binposplugin.o
2024-07-02T15:38:30,151   arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/binpos/binpos.o build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/binpos/src/binposplugin.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/binpos.cpython-39-arm-linux-gnueabihf.so
2024-07-02T15:38:30,292   building 'moleculekit.tmalign' extension
2024-07-02T15:38:30,293   creating build/temp.linux-armv7l-cpython-39/moleculekit/tmalign
2024-07-02T15:38:30,293   creating build/temp.linux-armv7l-cpython-39/moleculekit/tmalign/src
2024-07-02T15:38:30,294   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/tmalign -Imoleculekit/tmalign/include/ -Imoleculekit/tmalign/ -I/tmp/pip-build-env-3gnvbl2f/overlay/lib/python3.9/site-packages/numpy/_core/include -I/usr/include/python3.9 -c moleculekit/tmalign/src/TMAlign.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/tmalign/src/TMAlign.o -w
2024-07-02T15:38:59,816   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/tmalign -Imoleculekit/tmalign/include/ -Imoleculekit/tmalign/ -I/tmp/pip-build-env-3gnvbl2f/overlay/lib/python3.9/site-packages/numpy/_core/include -I/usr/include/python3.9 -c moleculekit/tmalign/tmalign_util.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/tmalign/tmalign_util.o -w
2024-07-02T15:39:18,312   In file included from /usr/include/c++/10/vector:72,
2024-07-02T15:39:18,313                    from moleculekit/tmalign/tmalign_util.cpp:1280:
2024-07-02T15:39:18,313   /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator<double>]’:
2024-07-02T15:39:18,313   /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<double>::iterator’ changed in GCC 7.1
2024-07-02T15:39:18,313     426 |       vector<_Tp, _Alloc>::
2024-07-02T15:39:18,313         |       ^~~~~~~~~~~~~~~~~~~
2024-07-02T15:39:18,896   In file included from /usr/include/c++/10/vector:67,
2024-07-02T15:39:18,896                    from moleculekit/tmalign/tmalign_util.cpp:1280:
2024-07-02T15:39:18,896   /usr/include/c++/10/bits/stl_vector.h: In function ‘PyObject* __pyx_pw_11moleculekit_7tmalign_1tmalign(PyObject*, PyObject* const*, Py_ssize_t, PyObject*)’:
2024-07-02T15:39:18,896   /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
2024-07-02T15:39:18,897    1198 |    _M_realloc_insert(end(), __x);
2024-07-02T15:39:18,897         |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2024-07-02T15:39:18,897   /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
2024-07-02T15:39:18,897    1198 |    _M_realloc_insert(end(), __x);
2024-07-02T15:39:18,897         |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2024-07-02T15:39:18,899   /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
2024-07-02T15:39:18,900    1198 |    _M_realloc_insert(end(), __x);
2024-07-02T15:39:18,900         |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2024-07-02T15:39:21,347   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/tmalign/src/TMAlign.o build/temp.linux-armv7l-cpython-39/moleculekit/tmalign/tmalign_util.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/tmalign.cpython-39-arm-linux-gnueabihf.so
2024-07-02T15:39:21,800   UPDATING build/lib.linux-armv7l-cpython-39/moleculekit/_version.py
2024-07-02T15:39:21,801   set build/lib.linux-armv7l-cpython-39/moleculekit/_version.py to '1.8.36'
2024-07-02T15:39:21,801   installing to build/bdist.linux-armv7l/wheel
2024-07-02T15:39:21,801   running install
2024-07-02T15:39:21,828   running install_lib
2024-07-02T15:39:21,835   creating build/bdist.linux-armv7l
2024-07-02T15:39:21,836   creating build/bdist.linux-armv7l/wheel
2024-07-02T15:39:21,839   creating build/bdist.linux-armv7l/wheel/moleculekit
2024-07-02T15:39:21,840   copying build/lib.linux-armv7l-cpython-39/moleculekit/xtc.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2024-07-02T15:39:21,864   creating build/bdist.linux-armv7l/wheel/moleculekit/distance_utils
2024-07-02T15:39:21,865   copying build/lib.linux-armv7l-cpython-39/moleculekit/distance_utils/distance_utils.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/distance_utils
2024-07-02T15:39:21,887   copying build/lib.linux-armv7l-cpython-39/moleculekit/distance_utils/distance_utils.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/distance_utils
2024-07-02T15:39:21,890   creating build/bdist.linux-armv7l/wheel/moleculekit/tmalign
2024-07-02T15:39:21,891   copying build/lib.linux-armv7l-cpython-39/moleculekit/tmalign/tmalign_util.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/tmalign
2024-07-02T15:39:21,910   copying build/lib.linux-armv7l-cpython-39/moleculekit/tmalign/tmalign_util.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/tmalign
2024-07-02T15:39:21,913   creating build/bdist.linux-armv7l/wheel/moleculekit/tmalign/include
2024-07-02T15:39:21,914   copying build/lib.linux-armv7l-cpython-39/moleculekit/tmalign/include/TMAlign.h -> build/bdist.linux-armv7l/wheel/moleculekit/tmalign/include
2024-07-02T15:39:21,916   copying build/lib.linux-armv7l-cpython-39/moleculekit/tmalign/tmalignlib.pxd -> build/bdist.linux-armv7l/wheel/moleculekit/tmalign
2024-07-02T15:39:21,918   creating build/bdist.linux-armv7l/wheel/moleculekit/tmalign/src
2024-07-02T15:39:21,919   copying build/lib.linux-armv7l-cpython-39/moleculekit/tmalign/src/TMAlign.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/tmalign/src
2024-07-02T15:39:21,925   copying build/lib.linux-armv7l-cpython-39/moleculekit/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-07-02T15:39:21,927   copying build/lib.linux-armv7l-cpython-39/moleculekit/vmdviewer.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-07-02T15:39:21,930   creating build/bdist.linux-armv7l/wheel/moleculekit/fileformats
2024-07-02T15:39:21,931   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats
2024-07-02T15:39:21,933   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/netcdf.py -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats
2024-07-02T15:39:21,936   creating build/bdist.linux-armv7l/wheel/moleculekit/fileformats/binpos
2024-07-02T15:39:21,937   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/binpos/binposlib.pxd -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/binpos
2024-07-02T15:39:21,939   creating build/bdist.linux-armv7l/wheel/moleculekit/fileformats/binpos/include
2024-07-02T15:39:21,940   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/binpos/include/molfile_plugin.h -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/binpos/include
2024-07-02T15:39:21,943   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/binpos/include/binposplugin.h -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/binpos/include
2024-07-02T15:39:21,945   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/binpos/include/largefiles.h -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/binpos/include
2024-07-02T15:39:21,947   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/binpos/binpos.c -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/binpos
2024-07-02T15:39:21,960   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/binpos/binpos.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/binpos
2024-07-02T15:39:21,964   creating build/bdist.linux-armv7l/wheel/moleculekit/fileformats/binpos/src
2024-07-02T15:39:21,965   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/binpos/src/binposplugin.c -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/binpos/src
2024-07-02T15:39:21,967   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/utils.py -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats
2024-07-02T15:39:21,970   creating build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc
2024-07-02T15:39:21,971   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/trr.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc
2024-07-02T15:39:21,974   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/trr.c -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc
2024-07-02T15:39:21,994   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/xdrlib.pxd -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc
2024-07-02T15:39:21,996   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/xtc.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc
2024-07-02T15:39:21,998   creating build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc/include
2024-07-02T15:39:21,999   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/include/xdrfile_xtc.h -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc/include
2024-07-02T15:39:22,002   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/include/xdr_seek.h -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc/include
2024-07-02T15:39:22,003   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/include/xdrfile_trr.h -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc/include
2024-07-02T15:39:22,006   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/include/xtc.h -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc/include
2024-07-02T15:39:22,007   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/include/trr_header.h -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc/include
2024-07-02T15:39:22,009   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/include/xdrfile.h -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc/include
2024-07-02T15:39:22,012   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/xtclib.pxd -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc
2024-07-02T15:39:22,014   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/trrlib.pxd -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc
2024-07-02T15:39:22,016   creating build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc/src
2024-07-02T15:39:22,017   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/src/xdr_seek.c -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc/src
2024-07-02T15:39:22,019   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/src/xdrfile.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc/src
2024-07-02T15:39:22,023   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/src/xdrfile_xtc.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc/src
2024-07-02T15:39:22,025   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/src/xdrfile_trr.c -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc/src
2024-07-02T15:39:22,028   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/src/xtc.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc/src
2024-07-02T15:39:22,031   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/xtc.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc
2024-07-02T15:39:22,059   creating build/bdist.linux-armv7l/wheel/moleculekit/fileformats/dcd
2024-07-02T15:39:22,060   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/dcd/dcdlib.pxd -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/dcd
2024-07-02T15:39:22,062   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/dcd/dcd.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/dcd
2024-07-02T15:39:22,065   creating build/bdist.linux-armv7l/wheel/moleculekit/fileformats/dcd/include
2024-07-02T15:39:22,066   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/dcd/include/dcdplugin.h -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/dcd/include
2024-07-02T15:39:22,068   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/dcd/include/molfile_plugin.h -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/dcd/include
2024-07-02T15:39:22,071   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/dcd/include/largefiles.h -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/dcd/include
2024-07-02T15:39:22,073   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/dcd/include/fastio.h -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/dcd/include
2024-07-02T15:39:22,075   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/dcd/include/endianswap.h -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/dcd/include
2024-07-02T15:39:22,078   creating build/bdist.linux-armv7l/wheel/moleculekit/fileformats/dcd/src
2024-07-02T15:39:22,079   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/dcd/src/dcdplugin.c -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/dcd/src
2024-07-02T15:39:22,082   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/dcd/dcd.c -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/dcd
2024-07-02T15:39:22,103   copying build/lib.linux-armv7l-cpython-39/moleculekit/distance_utils.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2024-07-02T15:39:22,130   copying build/lib.linux-armv7l-cpython-39/moleculekit/rcsb.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-07-02T15:39:22,132   creating build/bdist.linux-armv7l/wheel/moleculekit/atomselect_utils
2024-07-02T15:39:22,133   copying build/lib.linux-armv7l-cpython-39/moleculekit/atomselect_utils/atomselect_utils.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/atomselect_utils
2024-07-02T15:39:22,165   copying build/lib.linux-armv7l-cpython-39/moleculekit/atomselect_utils/atomselect_utils.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/atomselect_utils
2024-07-02T15:39:22,167   copying build/lib.linux-armv7l-cpython-39/moleculekit/rdkitintegration.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-07-02T15:39:22,169   copying build/lib.linux-armv7l-cpython-39/moleculekit/distance.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-07-02T15:39:22,171   copying build/lib.linux-armv7l-cpython-39/moleculekit/align.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-07-02T15:39:22,174   creating build/bdist.linux-armv7l/wheel/moleculekit/projections
2024-07-02T15:39:22,175   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metrictmscore.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2024-07-02T15:39:22,177   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2024-07-02T15:39:22,179   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metricdihedral.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2024-07-02T15:39:22,182   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metricrmsd.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2024-07-02T15:39:22,184   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/projection.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2024-07-02T15:39:22,185   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metriccoordinate.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2024-07-02T15:39:22,188   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metricsecondarystructure.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2024-07-02T15:39:22,190   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metricsphericalcoordinate.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2024-07-02T15:39:22,192   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metricplumed2.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2024-07-02T15:39:22,195   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metricdistance.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2024-07-02T15:39:22,198   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metricshell.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2024-07-02T15:39:22,200   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metricsasa.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2024-07-02T15:39:22,202   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/util.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2024-07-02T15:39:22,205   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metricgyration.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2024-07-02T15:39:22,207   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metricfluctuation.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2024-07-02T15:39:22,210   creating build/bdist.linux-armv7l/wheel/moleculekit/interactions
2024-07-02T15:39:22,210   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/interactions
2024-07-02T15:39:22,212   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/interactions.py -> build/bdist.linux-armv7l/wheel/moleculekit/interactions
2024-07-02T15:39:22,215   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/pipi.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit/interactions
2024-07-02T15:39:22,243   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/cationpi.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit/interactions
2024-07-02T15:39:22,267   creating build/bdist.linux-armv7l/wheel/moleculekit/interactions/cationpi
2024-07-02T15:39:22,268   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/cationpi/cationpi.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/cationpi
2024-07-02T15:39:22,270   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/cationpi/cationpi.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/cationpi
2024-07-02T15:39:22,289   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/sigmahole.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit/interactions
2024-07-02T15:39:22,317   creating build/bdist.linux-armv7l/wheel/moleculekit/interactions/pipi
2024-07-02T15:39:22,318   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/pipi/pipi.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/pipi
2024-07-02T15:39:22,320   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/pipi/pipi.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/pipi
2024-07-02T15:39:22,346   creating build/bdist.linux-armv7l/wheel/moleculekit/interactions/hbonds
2024-07-02T15:39:22,347   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/hbonds/hbonds.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/hbonds
2024-07-02T15:39:22,367   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/hbonds/hbonds.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/hbonds
2024-07-02T15:39:22,369   creating build/bdist.linux-armv7l/wheel/moleculekit/interactions/sigmahole
2024-07-02T15:39:22,370   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/sigmahole/sigmahole.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/sigmahole
2024-07-02T15:39:22,392   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/sigmahole/sigmahole.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/sigmahole
2024-07-02T15:39:22,394   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/hbonds.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit/interactions
2024-07-02T15:39:22,415   copying build/lib.linux-armv7l-cpython-39/moleculekit/dcd.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2024-07-02T15:39:22,430   copying build/lib.linux-armv7l-cpython-39/moleculekit/atomselect_utils.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2024-07-02T15:39:22,454   copying build/lib.linux-armv7l-cpython-39/moleculekit/viewer.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-07-02T15:39:22,456   copying build/lib.linux-armv7l-cpython-39/moleculekit/home.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-07-02T15:39:22,459   creating build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2024-07-02T15:39:22,460   copying build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/smallmolcdp.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2024-07-02T15:39:22,463   copying build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2024-07-02T15:39:22,466   copying build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/test_smallmol.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2024-07-02T15:39:22,470   copying build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/test_smallmollib.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2024-07-02T15:39:22,473   copying build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/smallmollib.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2024-07-02T15:39:22,475   copying build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/smallmol.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2024-07-02T15:39:22,479   creating build/bdist.linux-armv7l/wheel/moleculekit/smallmol/tools
2024-07-02T15:39:22,480   copying build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/tools/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol/tools
2024-07-02T15:39:22,482   copying build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/tools/test_tools.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol/tools
2024-07-02T15:39:22,484   copying build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/tools/clustering.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol/tools
2024-07-02T15:39:22,487   copying build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/tools/restrainedembed.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol/tools
2024-07-02T15:39:22,489   copying build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/util.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2024-07-02T15:39:22,492   copying build/lib.linux-armv7l-cpython-39/moleculekit/_version.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-07-02T15:39:22,494   copying build/lib.linux-armv7l-cpython-39/moleculekit/pymolgraphics.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-07-02T15:39:22,495   copying build/lib.linux-armv7l-cpython-39/moleculekit/opm.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-07-02T15:39:22,498   copying build/lib.linux-armv7l-cpython-39/moleculekit/occupancy_utils.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2024-07-02T15:39:22,524   copying build/lib.linux-armv7l-cpython-39/moleculekit/config.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-07-02T15:39:22,526   creating build/bdist.linux-armv7l/wheel/moleculekit/cython_utils
2024-07-02T15:39:22,527   copying build/lib.linux-armv7l-cpython-39/moleculekit/cython_utils/cython_utils.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/cython_utils
2024-07-02T15:39:22,530   copying build/lib.linux-armv7l-cpython-39/moleculekit/cython_utils/cython_utils.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/cython_utils
2024-07-02T15:39:22,560   copying build/lib.linux-armv7l-cpython-39/moleculekit/version.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-07-02T15:39:22,562   copying build/lib.linux-armv7l-cpython-39/moleculekit/bondguesser.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-07-02T15:39:22,564   copying build/lib.linux-armv7l-cpython-39/moleculekit/readers.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-07-02T15:39:22,570   copying build/lib.linux-armv7l-cpython-39/moleculekit/writers.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-07-02T15:39:22,573   creating build/bdist.linux-armv7l/wheel/moleculekit/share
2024-07-02T15:39:22,574   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/opm_sequences.json -> build/bdist.linux-armv7l/wheel/moleculekit/share
2024-07-02T15:39:22,791   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/ALA.cif -> build/bdist.linux-armv7l/wheel/moleculekit/share
2024-07-02T15:39:22,794   creating build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr
2024-07-02T15:39:22,797   creating build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-02T15:39:22,798   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ONL.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-02T15:39:22,800   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/4PQ.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-02T15:39:22,802   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/004.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-02T15:39:22,804   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/PRK.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-02T15:39:22,806   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/BB8.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-02T15:39:22,807   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/LME.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-02T15:39:22,809   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/OCY.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-02T15:39:22,811   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/PCA.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-02T15:39:22,813   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/NLE.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-02T15:39:22,815   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/DAH.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-02T15:39:22,817   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/TRO.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-02T15:39:22,818   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/03Y.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-02T15:39:22,820   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/IIL.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-02T15:39:22,822   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/D4P.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-02T15:39:22,824   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HOX.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-02T15:39:22,825   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/BTK.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-02T15:39:22,827   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/KYN.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-02T15:39:22,829   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/004.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-02T15:39:22,830   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MEN.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-02T15:39:22,832   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/D4P.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-02T15:39:22,834   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/GNC.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-02T15:39:22,835   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/LMQ.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-02T15:39:22,837   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CSP.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-02T15:39:22,839   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/NAL.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-02T15:39:22,841   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CSO.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-02T15:39:22,843   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/OCY.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-02T15:39:22,844   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/NZC.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-02T15:39:22,846   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/DPP.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-02T15:39:22,847   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HTR.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-02T15:39:22,849   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HHK.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-02T15:39:22,851   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/PRK.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-02T15:39:22,853   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MLZ.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-02T15:39:22,854   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ORM.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-02T15:39:22,856   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CSA.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-02T15:39:22,858   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CSA.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-02T15:39:22,859   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/0A1.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-02T15:39:22,861   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/4PH.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-02T15:39:22,863   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/DPP.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-02T15:39:22,865   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ME0.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-02T15:39:22,866   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/4PQ.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-02T15:39:22,868   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/LYZ.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-02T15:39:22,870   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/SEP.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-02T15:39:22,871   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CGU.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-02T15:39:22,873   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/4IN.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-02T15:39:22,875   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/PCA.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-02T15:39:22,877   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/YCM.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-02T15:39:22,878   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ALN.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-02T15:39:22,880   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/5JP.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-02T15:39:22,882   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ABA.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-02T15:39:22,884   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/FGL.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-02T15:39:22,886   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/NCY.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-02T15:39:22,887   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/DA2.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-02T15:39:22,890   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/4PH.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-02T15:39:22,891   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/BCS.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-02T15:39:22,893   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MEQ.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-02T15:39:22,895   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/LYZ.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-02T15:39:22,897   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/P1L.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-02T15:39:22,899   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HLU.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-02T15:39:22,901   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ESC.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-02T15:39:22,902   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/IGL.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-02T15:39:22,904   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HQA.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-02T15:39:22,906   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/GHG.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-02T15:39:22,908   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ALY.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-02T15:39:22,910   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/YCM.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-02T15:39:22,911   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/GME.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-02T15:39:22,913   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ALN.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-02T15:39:22,915   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HYP.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-02T15:39:22,917   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/0BN.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-02T15:39:22,918   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/AHP.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-02T15:39:22,920   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/IML.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-02T15:39:22,922   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ORM.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-02T15:39:22,924   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CCS.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-02T15:39:22,925   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/5JP.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-02T15:39:22,927   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/M3L.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-02T15:39:22,929   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ALC.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-02T15:39:22,931   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ABA.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-02T15:39:22,932   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/P1L.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-02T15:39:22,935   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/2MR.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-02T15:39:22,937   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MME.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-02T15:39:22,938   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MVA.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-02T15:39:22,940   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/BCS.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-02T15:39:22,942   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/YNM.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-02T15:39:22,944   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/M3L.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-02T15:39:22,946   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/2AS.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-02T15:39:22,948   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CSP.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-02T15:39:22,949   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/2ML.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-02T15:39:22,951   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/AA4.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-02T15:39:22,953   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/03Y.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-02T15:39:22,954   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/IML.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-02T15:39:22,956   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/DA2.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-02T15:39:22,958   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MEN.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-02T15:39:22,960   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/0A1.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-02T15:39:22,962   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/TYQ.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-02T15:39:22,963   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/1MH.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-02T15:39:22,965   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CSO.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-02T15:39:22,967   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/2MR.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-02T15:39:22,969   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MMO.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-02T15:39:22,971   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/2AS.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-02T15:39:22,973   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MEQ.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-02T15:39:22,975   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HPE.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-02T15:39:22,977   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/BB8.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-02T15:39:22,979   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/2ML.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-02T15:39:22,981   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MMO.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-02T15:39:22,982   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/TPO.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-02T15:39:22,984   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HLX.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-02T15:39:22,986   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/APD.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-02T15:39:22,987   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/APD.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-02T15:39:22,989   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/LMQ.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-02T15:39:22,991   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HTR.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-02T15:39:22,993   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/TPO.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-02T15:39:22,995   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CSS.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-02T15:39:22,996   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/NAL.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-02T15:39:22,998   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HHK.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-02T15:39:23,000   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MLZ.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-02T15:39:23,002   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MLE.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-02T15:39:23,004   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/NVA.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-02T15:39:23,005   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/DAB.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-02T15:39:23,007   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ESC.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-02T15:39:23,009   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/TY2.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-02T15:39:23,011   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/BTK.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-02T15:39:23,013   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HOX.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-02T15:39:23,014   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/IIL.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-02T15:39:23,016   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/LME.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-02T15:39:23,018   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/IGL.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-02T15:39:23,020   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/FGL.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-02T15:39:23,021   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/GNC.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-02T15:39:23,023   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HLX.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-02T15:39:23,025   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HQA.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-02T15:39:23,027   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/NLE.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-02T15:39:23,028   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/2GX.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-02T15:39:23,030   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ME0.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-02T15:39:23,032   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/1MH.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-02T15:39:23,034   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HLU.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-02T15:39:23,035   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/TYQ.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-02T15:39:23,037   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MLY.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-02T15:39:23,039   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/OMX.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-02T15:39:23,041   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/AHP.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-02T15:39:23,043   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ONL.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-02T15:39:23,044   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/TY2.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-02T15:39:23,046   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CGU.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-02T15:39:23,048   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ALC.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-02T15:39:23,050   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/.gitkeep -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-02T15:39:23,051   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/I2M.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-02T15:39:23,053   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HPE.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-02T15:39:23,055   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/4IN.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-02T15:39:23,056   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/2GX.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-02T15:39:23,058   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ALY.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-02T15:39:23,060   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/I2M.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-02T15:39:23,062   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/NVA.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-02T15:39:23,063   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/0BN.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-02T15:39:23,065   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/0AF.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-02T15:39:23,067   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CSS.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-02T15:39:23,069   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/0AF.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-02T15:39:23,071   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/AA4.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-02T15:39:23,073   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/GME.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-02T15:39:23,074   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/NZC.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-02T15:39:23,076   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/DAH.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-02T15:39:23,078   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MEA.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-02T15:39:23,080   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MME.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-02T15:39:23,082   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MLY.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-02T15:39:23,084   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/PTR.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-02T15:39:23,086   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MEA.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-02T15:39:23,088   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/YNM.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-02T15:39:23,089   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MLE.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-02T15:39:23,091   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/GHG.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-02T15:39:23,093   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/PTR.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-02T15:39:23,095   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HYP.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-02T15:39:23,097   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/NCY.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-02T15:39:23,098   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/SEP.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-02T15:39:23,100   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/OMX.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-02T15:39:23,102   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/KYN.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-02T15:39:23,104   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CCS.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-02T15:39:23,105   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/TRO.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-02T15:39:23,107   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/DAB.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-02T15:39:23,109   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MVA.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-02T15:39:23,111   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/backbone.cif -> build/bdist.linux-armv7l/wheel/moleculekit/share
2024-07-02T15:39:23,113   creating build/bdist.linux-armv7l/wheel/moleculekit/share/atomselect
2024-07-02T15:39:23,114   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/atomselect/atomselect.json -> build/bdist.linux-armv7l/wheel/moleculekit/share/atomselect
2024-07-02T15:39:23,117   creating build/bdist.linux-armv7l/wheel/moleculekit/bondguesser_utils
2024-07-02T15:39:23,117   copying build/lib.linux-armv7l-cpython-39/moleculekit/bondguesser_utils/bondguesser_utils.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/bondguesser_utils
2024-07-02T15:39:23,146   copying build/lib.linux-armv7l-cpython-39/moleculekit/bondguesser_utils/bondguesser_utils.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/bondguesser_utils
2024-07-02T15:39:23,149   creating build/bdist.linux-armv7l/wheel/moleculekit/occupancy_utils
2024-07-02T15:39:23,150   copying build/lib.linux-armv7l-cpython-39/moleculekit/occupancy_utils/occupancy_utils.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/occupancy_utils
2024-07-02T15:39:23,152   copying build/lib.linux-armv7l-cpython-39/moleculekit/occupancy_utils/occupancy_utils.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/occupancy_utils
2024-07-02T15:39:23,177   creating build/bdist.linux-armv7l/wheel/moleculekit/pdbx
2024-07-02T15:39:23,179   creating build/bdist.linux-armv7l/wheel/moleculekit/pdbx/reader
2024-07-02T15:39:23,180   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/reader/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/reader
2024-07-02T15:39:23,181   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/reader/PdbxReader.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/reader
2024-07-02T15:39:23,184   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/reader/PdbxContainers.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/reader
2024-07-02T15:39:23,186   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/reader/PdbxParser.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/reader
2024-07-02T15:39:23,189   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx
2024-07-02T15:39:23,191   creating build/bdist.linux-armv7l/wheel/moleculekit/pdbx/writer
2024-07-02T15:39:23,191   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/writer/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/writer
2024-07-02T15:39:23,193   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/writer/PdbxWriter.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/writer
2024-07-02T15:39:23,196   creating build/bdist.linux-armv7l/wheel/moleculekit/pdbx/tests
2024-07-02T15:39:23,197   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/tests/PdbxReadWriteTests.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/tests
2024-07-02T15:39:23,199   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/tests/PdbxWriterTests.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/tests
2024-07-02T15:39:23,201   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/tests/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/tests
2024-07-02T15:39:23,202   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/tests/PdbxReaderTests.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/tests
2024-07-02T15:39:23,205   creating build/bdist.linux-armv7l/wheel/moleculekit/tools
2024-07-02T15:39:23,206   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/hhblitsprofile.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2024-07-02T15:39:23,208   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/moleculechecks.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2024-07-02T15:39:23,210   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/voxeldescriptors.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2024-07-02T15:39:23,213   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2024-07-02T15:39:23,214   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/sequencestructuralalignment.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2024-07-02T15:39:23,217   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/modelling.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2024-07-02T15:39:23,219   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/docking.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2024-07-02T15:39:23,221   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/graphalignment.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2024-07-02T15:39:23,223   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/preparation.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2024-07-02T15:39:23,227   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/atomtyper.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2024-07-02T15:39:23,229   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/detect.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2024-07-02T15:39:23,232   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/crystalpacking.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2024-07-02T15:39:23,235   creating build/bdist.linux-armv7l/wheel/moleculekit/tools/obabel_tools
2024-07-02T15:39:23,235   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/obabel_tools/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools/obabel_tools
2024-07-02T15:39:23,237   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/obabel_tools/obabel_cli.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools/obabel_tools
2024-07-02T15:39:23,239   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/preparation_customres.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2024-07-02T15:39:23,241   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/autosegment.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2024-07-02T15:39:23,244   copying build/lib.linux-armv7l-cpython-39/moleculekit/molecule.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-07-02T15:39:23,249   copying build/lib.linux-armv7l-cpython-39/moleculekit/binpos.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2024-07-02T15:39:23,268   creating build/bdist.linux-armv7l/wheel/moleculekit/ply
2024-07-02T15:39:23,269   copying build/lib.linux-armv7l-cpython-39/moleculekit/ply/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/ply
2024-07-02T15:39:23,270   copying build/lib.linux-armv7l-cpython-39/moleculekit/ply/yacc.py -> build/bdist.linux-armv7l/wheel/moleculekit/ply
2024-07-02T15:39:23,275   copying build/lib.linux-armv7l-cpython-39/moleculekit/ply/lex.py -> build/bdist.linux-armv7l/wheel/moleculekit/ply
2024-07-02T15:39:23,277   copying build/lib.linux-armv7l-cpython-39/moleculekit/wrapping.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2024-07-02T15:39:23,306   copying build/lib.linux-armv7l-cpython-39/moleculekit/util.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-07-02T15:39:23,309   copying build/lib.linux-armv7l-cpython-39/moleculekit/vmdgraphics.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-07-02T15:39:23,311   copying build/lib.linux-armv7l-cpython-39/moleculekit/logging.ini -> build/bdist.linux-armv7l/wheel/moleculekit
2024-07-02T15:39:23,313   copying build/lib.linux-armv7l-cpython-39/moleculekit/periodictable.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-07-02T15:39:23,316   creating build/bdist.linux-armv7l/wheel/moleculekit/wrapping
2024-07-02T15:39:23,317   copying build/lib.linux-armv7l-cpython-39/moleculekit/wrapping/wrapping.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/wrapping
2024-07-02T15:39:23,337   copying build/lib.linux-armv7l-cpython-39/moleculekit/wrapping/wrapping.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/wrapping
2024-07-02T15:39:23,339   copying build/lib.linux-armv7l-cpython-39/moleculekit/vmd_wrapper -> build/bdist.linux-armv7l/wheel/moleculekit
2024-07-02T15:39:23,340   copying build/lib.linux-armv7l-cpython-39/moleculekit/tmalign.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2024-07-02T15:39:23,393   copying build/lib.linux-armv7l-cpython-39/moleculekit/dihedral.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-07-02T15:39:23,395   copying build/lib.linux-armv7l-cpython-39/moleculekit/trr.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2024-07-02T15:39:23,423   creating build/bdist.linux-armv7l/wheel/moleculekit/atomselect
2024-07-02T15:39:23,424   copying build/lib.linux-armv7l-cpython-39/moleculekit/atomselect/languageparser.py -> build/bdist.linux-armv7l/wheel/moleculekit/atomselect
2024-07-02T15:39:23,427   copying build/lib.linux-armv7l-cpython-39/moleculekit/atomselect/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/atomselect
2024-07-02T15:39:23,429   copying build/lib.linux-armv7l-cpython-39/moleculekit/atomselect/analyze.py -> build/bdist.linux-armv7l/wheel/moleculekit/atomselect
2024-07-02T15:39:23,431   copying build/lib.linux-armv7l-cpython-39/moleculekit/atomselect/atomselect.py -> build/bdist.linux-armv7l/wheel/moleculekit/atomselect
2024-07-02T15:39:23,433   copying build/lib.linux-armv7l-cpython-39/moleculekit/bondguesser_utils.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2024-07-02T15:39:23,457   copying build/lib.linux-armv7l-cpython-39/moleculekit/cython_utils.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2024-07-02T15:39:23,478   running install_egg_info
2024-07-02T15:39:23,484   Copying moleculekit.egg-info to build/bdist.linux-armv7l/wheel/moleculekit-1.8.36-py3.9.egg-info
2024-07-02T15:39:23,497   running install_scripts
2024-07-02T15:39:23,546   creating build/bdist.linux-armv7l/wheel/moleculekit-1.8.36.dist-info/WHEEL
2024-07-02T15:39:23,549   creating '/tmp/pip-wheel-rytzh2c2/.tmp-fwxrcxj1/moleculekit-1.8.36-cp39-cp39-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2024-07-02T15:39:23,553   adding 'moleculekit/__init__.py'
2024-07-02T15:39:23,554   adding 'moleculekit/_version.py'
2024-07-02T15:39:23,556   adding 'moleculekit/align.py'
2024-07-02T15:39:23,868   adding 'moleculekit/atomselect_utils.cpython-39-arm-linux-gnueabihf.so'
2024-07-02T15:39:24,030   adding 'moleculekit/binpos.cpython-39-arm-linux-gnueabihf.so'
2024-07-02T15:39:24,037   adding 'moleculekit/bondguesser.py'
2024-07-02T15:39:24,281   adding 'moleculekit/bondguesser_utils.cpython-39-arm-linux-gnueabihf.so'
2024-07-02T15:39:24,290   adding 'moleculekit/config.py'
2024-07-02T15:39:24,549   adding 'moleculekit/cython_utils.cpython-39-arm-linux-gnueabihf.so'
2024-07-02T15:39:24,725   adding 'moleculekit/dcd.cpython-39-arm-linux-gnueabihf.so'
2024-07-02T15:39:24,731   adding 'moleculekit/dihedral.py'
2024-07-02T15:39:24,732   adding 'moleculekit/distance.py'
2024-07-02T15:39:25,065   adding 'moleculekit/distance_utils.cpython-39-arm-linux-gnueabihf.so'
2024-07-02T15:39:25,077   adding 'moleculekit/home.py'
2024-07-02T15:39:25,078   adding 'moleculekit/logging.ini'
2024-07-02T15:39:25,092   adding 'moleculekit/molecule.py'
2024-07-02T15:39:25,320   adding 'moleculekit/occupancy_utils.cpython-39-arm-linux-gnueabihf.so'
2024-07-02T15:39:25,329   adding 'moleculekit/opm.py'
2024-07-02T15:39:25,331   adding 'moleculekit/periodictable.py'
2024-07-02T15:39:25,333   adding 'moleculekit/pymolgraphics.py'
2024-07-02T15:39:25,334   adding 'moleculekit/rcsb.py'
2024-07-02T15:39:25,335   adding 'moleculekit/rdkitintegration.py'
2024-07-02T15:39:25,349   adding 'moleculekit/readers.py'
2024-07-02T15:39:25,961   adding 'moleculekit/tmalign.cpython-39-arm-linux-gnueabihf.so'
2024-07-02T15:39:26,274   adding 'moleculekit/trr.cpython-39-arm-linux-gnueabihf.so'
2024-07-02T15:39:26,286   adding 'moleculekit/util.py'
2024-07-02T15:39:26,288   adding 'moleculekit/version.py'
2024-07-02T15:39:26,289   adding 'moleculekit/viewer.py'
2024-07-02T15:39:26,291   adding 'moleculekit/vmd_wrapper'
2024-07-02T15:39:26,293   adding 'moleculekit/vmdgraphics.py'
2024-07-02T15:39:26,295   adding 'moleculekit/vmdviewer.py'
2024-07-02T15:39:26,549   adding 'moleculekit/wrapping.cpython-39-arm-linux-gnueabihf.so'
2024-07-02T15:39:26,564   adding 'moleculekit/writers.py'
2024-07-02T15:39:26,833   adding 'moleculekit/xtc.cpython-39-arm-linux-gnueabihf.so'
2024-07-02T15:39:26,843   adding 'moleculekit/atomselect/__init__.py'
2024-07-02T15:39:26,846   adding 'moleculekit/atomselect/analyze.py'
2024-07-02T15:39:26,849   adding 'moleculekit/atomselect/atomselect.py'
2024-07-02T15:39:26,851   adding 'moleculekit/atomselect/languageparser.py'
2024-07-02T15:39:26,956   adding 'moleculekit/atomselect_utils/atomselect_utils.cpp'
2024-07-02T15:39:26,967   adding 'moleculekit/atomselect_utils/atomselect_utils.pyx'
2024-07-02T15:39:27,062   adding 'moleculekit/bondguesser_utils/bondguesser_utils.cpp'
2024-07-02T15:39:27,071   adding 'moleculekit/bondguesser_utils/bondguesser_utils.pyx'
2024-07-02T15:39:27,165   adding 'moleculekit/cython_utils/cython_utils.cpp'
2024-07-02T15:39:27,174   adding 'moleculekit/cython_utils/cython_utils.pyx'
2024-07-02T15:39:27,279   adding 'moleculekit/distance_utils/distance_utils.cpp'
2024-07-02T15:39:27,289   adding 'moleculekit/distance_utils/distance_utils.pyx'
2024-07-02T15:39:27,291   adding 'moleculekit/fileformats/__init__.py'
2024-07-02T15:39:27,296   adding 'moleculekit/fileformats/netcdf.py'
2024-07-02T15:39:27,298   adding 'moleculekit/fileformats/utils.py'
2024-07-02T15:39:27,361   adding 'moleculekit/fileformats/binpos/binpos.c'
2024-07-02T15:39:27,368   adding 'moleculekit/fileformats/binpos/binpos.pyx'
2024-07-02T15:39:27,370   adding 'moleculekit/fileformats/binpos/binposlib.pxd'
2024-07-02T15:39:27,371   adding 'moleculekit/fileformats/binpos/include/binposplugin.h'
2024-07-02T15:39:27,373   adding 'moleculekit/fileformats/binpos/include/largefiles.h'
2024-07-02T15:39:27,378   adding 'moleculekit/fileformats/binpos/include/molfile_plugin.h'
2024-07-02T15:39:27,380   adding 'moleculekit/fileformats/binpos/src/binposplugin.c'
2024-07-02T15:39:27,445   adding 'moleculekit/fileformats/dcd/dcd.c'
2024-07-02T15:39:27,453   adding 'moleculekit/fileformats/dcd/dcd.pyx'
2024-07-02T15:39:27,454   adding 'moleculekit/fileformats/dcd/dcdlib.pxd'
2024-07-02T15:39:27,456   adding 'moleculekit/fileformats/dcd/include/dcdplugin.h'
2024-07-02T15:39:27,458   adding 'moleculekit/fileformats/dcd/include/endianswap.h'
2024-07-02T15:39:27,460   adding 'moleculekit/fileformats/dcd/include/fastio.h'
2024-07-02T15:39:27,461   adding 'moleculekit/fileformats/dcd/include/largefiles.h'
2024-07-02T15:39:27,466   adding 'moleculekit/fileformats/dcd/include/molfile_plugin.h'
2024-07-02T15:39:27,472   adding 'moleculekit/fileformats/dcd/src/dcdplugin.c'
2024-07-02T15:39:27,569   adding 'moleculekit/fileformats/xtc/trr.c'
2024-07-02T15:39:27,580   adding 'moleculekit/fileformats/xtc/trr.pyx'
2024-07-02T15:39:27,582   adding 'moleculekit/fileformats/xtc/trrlib.pxd'
2024-07-02T15:39:27,583   adding 'moleculekit/fileformats/xtc/xdrlib.pxd'
2024-07-02T15:39:27,674   adding 'moleculekit/fileformats/xtc/xtc.cpp'
2024-07-02T15:39:27,683   adding 'moleculekit/fileformats/xtc/xtc.pyx'
2024-07-02T15:39:27,684   adding 'moleculekit/fileformats/xtc/xtclib.pxd'
2024-07-02T15:39:27,686   adding 'moleculekit/fileformats/xtc/include/trr_header.h'
2024-07-02T15:39:27,687   adding 'moleculekit/fileformats/xtc/include/xdr_seek.h'
2024-07-02T15:39:27,690   adding 'moleculekit/fileformats/xtc/include/xdrfile.h'
2024-07-02T15:39:27,691   adding 'moleculekit/fileformats/xtc/include/xdrfile_trr.h'
2024-07-02T15:39:27,693   adding 'moleculekit/fileformats/xtc/include/xdrfile_xtc.h'
2024-07-02T15:39:27,694   adding 'moleculekit/fileformats/xtc/include/xtc.h'
2024-07-02T15:39:27,696   adding 'moleculekit/fileformats/xtc/src/xdr_seek.c'
2024-07-02T15:39:27,703   adding 'moleculekit/fileformats/xtc/src/xdrfile.cpp'
2024-07-02T15:39:27,705   adding 'moleculekit/fileformats/xtc/src/xdrfile_trr.c'
2024-07-02T15:39:27,707   adding 'moleculekit/fileformats/xtc/src/xdrfile_xtc.cpp'
2024-07-02T15:39:27,709   adding 'moleculekit/fileformats/xtc/src/xtc.cpp'
2024-07-02T15:39:27,711   adding 'moleculekit/interactions/__init__.py'
2024-07-02T15:39:27,996   adding 'moleculekit/interactions/cationpi.cpython-39-arm-linux-gnueabihf.so'
2024-07-02T15:39:28,268   adding 'moleculekit/interactions/hbonds.cpython-39-arm-linux-gnueabihf.so'
2024-07-02T15:39:28,280   adding 'moleculekit/interactions/interactions.py'
2024-07-02T15:39:28,567   adding 'moleculekit/interactions/pipi.cpython-39-arm-linux-gnueabihf.so'
2024-07-02T15:39:28,856   adding 'moleculekit/interactions/sigmahole.cpython-39-arm-linux-gnueabihf.so'
2024-07-02T15:39:28,959   adding 'moleculekit/interactions/cationpi/cationpi.cpp'
2024-07-02T15:39:28,968   adding 'moleculekit/interactions/cationpi/cationpi.pyx'
2024-07-02T15:39:29,061   adding 'moleculekit/interactions/hbonds/hbonds.cpp'
2024-07-02T15:39:29,070   adding 'moleculekit/interactions/hbonds/hbonds.pyx'
2024-07-02T15:39:29,164   adding 'moleculekit/interactions/pipi/pipi.cpp'
2024-07-02T15:39:29,173   adding 'moleculekit/interactions/pipi/pipi.pyx'
2024-07-02T15:39:29,267   adding 'moleculekit/interactions/sigmahole/sigmahole.cpp'
2024-07-02T15:39:29,276   adding 'moleculekit/interactions/sigmahole/sigmahole.pyx'
2024-07-02T15:39:29,364   adding 'moleculekit/occupancy_utils/occupancy_utils.cpp'
2024-07-02T15:39:29,373   adding 'moleculekit/occupancy_utils/occupancy_utils.pyx'
2024-07-02T15:39:29,374   adding 'moleculekit/pdbx/__init__.py'
2024-07-02T15:39:29,378   adding 'moleculekit/pdbx/reader/PdbxContainers.py'
2024-07-02T15:39:29,381   adding 'moleculekit/pdbx/reader/PdbxParser.py'
2024-07-02T15:39:29,383   adding 'moleculekit/pdbx/reader/PdbxReader.py'
2024-07-02T15:39:29,385   adding 'moleculekit/pdbx/reader/__init__.py'
2024-07-02T15:39:29,387   adding 'moleculekit/pdbx/tests/PdbxReadWriteTests.py'
2024-07-02T15:39:29,388   adding 'moleculekit/pdbx/tests/PdbxReaderTests.py'
2024-07-02T15:39:29,390   adding 'moleculekit/pdbx/tests/PdbxWriterTests.py'
2024-07-02T15:39:29,391   adding 'moleculekit/pdbx/tests/__init__.py'
2024-07-02T15:39:29,393   adding 'moleculekit/pdbx/writer/PdbxWriter.py'
2024-07-02T15:39:29,394   adding 'moleculekit/pdbx/writer/__init__.py'
2024-07-02T15:39:29,396   adding 'moleculekit/ply/__init__.py'
2024-07-02T15:39:29,400   adding 'moleculekit/ply/lex.py'
2024-07-02T15:39:29,412   adding 'moleculekit/ply/yacc.py'
2024-07-02T15:39:29,415   adding 'moleculekit/projections/__init__.py'
2024-07-02T15:39:29,417   adding 'moleculekit/projections/metriccoordinate.py'
2024-07-02T15:39:29,420   adding 'moleculekit/projections/metricdihedral.py'
2024-07-02T15:39:29,424   adding 'moleculekit/projections/metricdistance.py'
2024-07-02T15:39:29,426   adding 'moleculekit/projections/metricfluctuation.py'
2024-07-02T15:39:29,428   adding 'moleculekit/projections/metricgyration.py'
2024-07-02T15:39:29,432   adding 'moleculekit/projections/metricplumed2.py'
2024-07-02T15:39:29,434   adding 'moleculekit/projections/metricrmsd.py'
2024-07-02T15:39:29,436   adding 'moleculekit/projections/metricsasa.py'
2024-07-02T15:39:29,438   adding 'moleculekit/projections/metricsecondarystructure.py'
2024-07-02T15:39:29,440   adding 'moleculekit/projections/metricshell.py'
2024-07-02T15:39:29,442   adding 'moleculekit/projections/metricsphericalcoordinate.py'
2024-07-02T15:39:29,443   adding 'moleculekit/projections/metrictmscore.py'
2024-07-02T15:39:29,444   adding 'moleculekit/projections/projection.py'
2024-07-02T15:39:29,446   adding 'moleculekit/projections/util.py'
2024-07-02T15:39:29,448   adding 'moleculekit/share/ALA.cif'
2024-07-02T15:39:29,449   adding 'moleculekit/share/backbone.cif'
2024-07-02T15:39:30,767   adding 'moleculekit/share/opm_sequences.json'
2024-07-02T15:39:30,852   adding 'moleculekit/share/atomselect/atomselect.json'
2024-07-02T15:39:30,857   adding 'moleculekit/share/pdb2pqr/residues/.gitkeep'
2024-07-02T15:39:30,858   adding 'moleculekit/share/pdb2pqr/residues/004.dat'
2024-07-02T15:39:30,859   adding 'moleculekit/share/pdb2pqr/residues/004.xml'
2024-07-02T15:39:30,861   adding 'moleculekit/share/pdb2pqr/residues/03Y.dat'
2024-07-02T15:39:30,862   adding 'moleculekit/share/pdb2pqr/residues/03Y.xml'
2024-07-02T15:39:30,863   adding 'moleculekit/share/pdb2pqr/residues/0A1.dat'
2024-07-02T15:39:30,864   adding 'moleculekit/share/pdb2pqr/residues/0A1.xml'
2024-07-02T15:39:30,865   adding 'moleculekit/share/pdb2pqr/residues/0AF.dat'
2024-07-02T15:39:30,867   adding 'moleculekit/share/pdb2pqr/residues/0AF.xml'
2024-07-02T15:39:30,868   adding 'moleculekit/share/pdb2pqr/residues/0BN.dat'
2024-07-02T15:39:30,869   adding 'moleculekit/share/pdb2pqr/residues/0BN.xml'
2024-07-02T15:39:30,870   adding 'moleculekit/share/pdb2pqr/residues/1MH.dat'
2024-07-02T15:39:30,872   adding 'moleculekit/share/pdb2pqr/residues/1MH.xml'
2024-07-02T15:39:30,873   adding 'moleculekit/share/pdb2pqr/residues/2AS.dat'
2024-07-02T15:39:30,874   adding 'moleculekit/share/pdb2pqr/residues/2AS.xml'
2024-07-02T15:39:30,875   adding 'moleculekit/share/pdb2pqr/residues/2GX.dat'
2024-07-02T15:39:30,877   adding 'moleculekit/share/pdb2pqr/residues/2GX.xml'
2024-07-02T15:39:30,878   adding 'moleculekit/share/pdb2pqr/residues/2ML.dat'
2024-07-02T15:39:30,879   adding 'moleculekit/share/pdb2pqr/residues/2ML.xml'
2024-07-02T15:39:30,880   adding 'moleculekit/share/pdb2pqr/residues/2MR.dat'
2024-07-02T15:39:30,882   adding 'moleculekit/share/pdb2pqr/residues/2MR.xml'
2024-07-02T15:39:30,883   adding 'moleculekit/share/pdb2pqr/residues/4IN.dat'
2024-07-02T15:39:30,884   adding 'moleculekit/share/pdb2pqr/residues/4IN.xml'
2024-07-02T15:39:30,885   adding 'moleculekit/share/pdb2pqr/residues/4PH.dat'
2024-07-02T15:39:30,887   adding 'moleculekit/share/pdb2pqr/residues/4PH.xml'
2024-07-02T15:39:30,888   adding 'moleculekit/share/pdb2pqr/residues/4PQ.dat'
2024-07-02T15:39:30,889   adding 'moleculekit/share/pdb2pqr/residues/4PQ.xml'
2024-07-02T15:39:30,891   adding 'moleculekit/share/pdb2pqr/residues/5JP.dat'
2024-07-02T15:39:30,892   adding 'moleculekit/share/pdb2pqr/residues/5JP.xml'
2024-07-02T15:39:30,893   adding 'moleculekit/share/pdb2pqr/residues/AA4.dat'
2024-07-02T15:39:30,894   adding 'moleculekit/share/pdb2pqr/residues/AA4.xml'
2024-07-02T15:39:30,895   adding 'moleculekit/share/pdb2pqr/residues/ABA.dat'
2024-07-02T15:39:30,897   adding 'moleculekit/share/pdb2pqr/residues/ABA.xml'
2024-07-02T15:39:30,898   adding 'moleculekit/share/pdb2pqr/residues/AHP.dat'
2024-07-02T15:39:30,899   adding 'moleculekit/share/pdb2pqr/residues/AHP.xml'
2024-07-02T15:39:30,900   adding 'moleculekit/share/pdb2pqr/residues/ALC.dat'
2024-07-02T15:39:30,902   adding 'moleculekit/share/pdb2pqr/residues/ALC.xml'
2024-07-02T15:39:30,903   adding 'moleculekit/share/pdb2pqr/residues/ALN.dat'
2024-07-02T15:39:30,904   adding 'moleculekit/share/pdb2pqr/residues/ALN.xml'
2024-07-02T15:39:30,905   adding 'moleculekit/share/pdb2pqr/residues/ALY.dat'
2024-07-02T15:39:30,907   adding 'moleculekit/share/pdb2pqr/residues/ALY.xml'
2024-07-02T15:39:30,908   adding 'moleculekit/share/pdb2pqr/residues/APD.dat'
2024-07-02T15:39:30,910   adding 'moleculekit/share/pdb2pqr/residues/APD.xml'
2024-07-02T15:39:30,911   adding 'moleculekit/share/pdb2pqr/residues/BB8.dat'
2024-07-02T15:39:30,912   adding 'moleculekit/share/pdb2pqr/residues/BB8.xml'
2024-07-02T15:39:30,914   adding 'moleculekit/share/pdb2pqr/residues/BCS.dat'
2024-07-02T15:39:30,915   adding 'moleculekit/share/pdb2pqr/residues/BCS.xml'
2024-07-02T15:39:30,916   adding 'moleculekit/share/pdb2pqr/residues/BTK.dat'
2024-07-02T15:39:30,917   adding 'moleculekit/share/pdb2pqr/residues/BTK.xml'
2024-07-02T15:39:30,918   adding 'moleculekit/share/pdb2pqr/residues/CCS.dat'
2024-07-02T15:39:30,920   adding 'moleculekit/share/pdb2pqr/residues/CCS.xml'
2024-07-02T15:39:30,921   adding 'moleculekit/share/pdb2pqr/residues/CGU.dat'
2024-07-02T15:39:30,922   adding 'moleculekit/share/pdb2pqr/residues/CGU.xml'
2024-07-02T15:39:30,924   adding 'moleculekit/share/pdb2pqr/residues/CSA.dat'
2024-07-02T15:39:30,925   adding 'moleculekit/share/pdb2pqr/residues/CSA.xml'
2024-07-02T15:39:30,926   adding 'moleculekit/share/pdb2pqr/residues/CSO.dat'
2024-07-02T15:39:30,927   adding 'moleculekit/share/pdb2pqr/residues/CSO.xml'
2024-07-02T15:39:30,929   adding 'moleculekit/share/pdb2pqr/residues/CSP.dat'
2024-07-02T15:39:30,930   adding 'moleculekit/share/pdb2pqr/residues/CSP.xml'
2024-07-02T15:39:30,931   adding 'moleculekit/share/pdb2pqr/residues/CSS.dat'
2024-07-02T15:39:30,932   adding 'moleculekit/share/pdb2pqr/residues/CSS.xml'
2024-07-02T15:39:30,933   adding 'moleculekit/share/pdb2pqr/residues/D4P.dat'
2024-07-02T15:39:30,935   adding 'moleculekit/share/pdb2pqr/residues/D4P.xml'
2024-07-02T15:39:30,936   adding 'moleculekit/share/pdb2pqr/residues/DA2.dat'
2024-07-02T15:39:30,937   adding 'moleculekit/share/pdb2pqr/residues/DA2.xml'
2024-07-02T15:39:30,938   adding 'moleculekit/share/pdb2pqr/residues/DAB.dat'
2024-07-02T15:39:30,940   adding 'moleculekit/share/pdb2pqr/residues/DAB.xml'
2024-07-02T15:39:30,941   adding 'moleculekit/share/pdb2pqr/residues/DAH.dat'
2024-07-02T15:39:30,942   adding 'moleculekit/share/pdb2pqr/residues/DAH.xml'
2024-07-02T15:39:30,943   adding 'moleculekit/share/pdb2pqr/residues/DPP.dat'
2024-07-02T15:39:30,944   adding 'moleculekit/share/pdb2pqr/residues/DPP.xml'
2024-07-02T15:39:30,946   adding 'moleculekit/share/pdb2pqr/residues/ESC.dat'
2024-07-02T15:39:30,947   adding 'moleculekit/share/pdb2pqr/residues/ESC.xml'
2024-07-02T15:39:30,948   adding 'moleculekit/share/pdb2pqr/residues/FGL.dat'
2024-07-02T15:39:30,949   adding 'moleculekit/share/pdb2pqr/residues/FGL.xml'
2024-07-02T15:39:30,950   adding 'moleculekit/share/pdb2pqr/residues/GHG.dat'
2024-07-02T15:39:30,952   adding 'moleculekit/share/pdb2pqr/residues/GHG.xml'
2024-07-02T15:39:30,953   adding 'moleculekit/share/pdb2pqr/residues/GME.dat'
2024-07-02T15:39:30,954   adding 'moleculekit/share/pdb2pqr/residues/GME.xml'
2024-07-02T15:39:30,955   adding 'moleculekit/share/pdb2pqr/residues/GNC.dat'
2024-07-02T15:39:30,957   adding 'moleculekit/share/pdb2pqr/residues/GNC.xml'
2024-07-02T15:39:30,958   adding 'moleculekit/share/pdb2pqr/residues/HHK.dat'
2024-07-02T15:39:30,959   adding 'moleculekit/share/pdb2pqr/residues/HHK.xml'
2024-07-02T15:39:30,960   adding 'moleculekit/share/pdb2pqr/residues/HLU.dat'
2024-07-02T15:39:30,962   adding 'moleculekit/share/pdb2pqr/residues/HLU.xml'
2024-07-02T15:39:30,963   adding 'moleculekit/share/pdb2pqr/residues/HLX.dat'
2024-07-02T15:39:30,964   adding 'moleculekit/share/pdb2pqr/residues/HLX.xml'
2024-07-02T15:39:30,965   adding 'moleculekit/share/pdb2pqr/residues/HOX.dat'
2024-07-02T15:39:30,967   adding 'moleculekit/share/pdb2pqr/residues/HOX.xml'
2024-07-02T15:39:30,968   adding 'moleculekit/share/pdb2pqr/residues/HPE.dat'
2024-07-02T15:39:30,969   adding 'moleculekit/share/pdb2pqr/residues/HPE.xml'
2024-07-02T15:39:30,970   adding 'moleculekit/share/pdb2pqr/residues/HQA.dat'
2024-07-02T15:39:30,972   adding 'moleculekit/share/pdb2pqr/residues/HQA.xml'
2024-07-02T15:39:30,974   adding 'moleculekit/share/pdb2pqr/residues/HTR.dat'
2024-07-02T15:39:30,975   adding 'moleculekit/share/pdb2pqr/residues/HTR.xml'
2024-07-02T15:39:30,976   adding 'moleculekit/share/pdb2pqr/residues/HYP.dat'
2024-07-02T15:39:30,977   adding 'moleculekit/share/pdb2pqr/residues/HYP.xml'
2024-07-02T15:39:30,979   adding 'moleculekit/share/pdb2pqr/residues/I2M.dat'
2024-07-02T15:39:30,980   adding 'moleculekit/share/pdb2pqr/residues/I2M.xml'
2024-07-02T15:39:30,981   adding 'moleculekit/share/pdb2pqr/residues/IGL.dat'
2024-07-02T15:39:30,982   adding 'moleculekit/share/pdb2pqr/residues/IGL.xml'
2024-07-02T15:39:30,984   adding 'moleculekit/share/pdb2pqr/residues/IIL.dat'
2024-07-02T15:39:30,985   adding 'moleculekit/share/pdb2pqr/residues/IIL.xml'
2024-07-02T15:39:30,986   adding 'moleculekit/share/pdb2pqr/residues/IML.dat'
2024-07-02T15:39:30,987   adding 'moleculekit/share/pdb2pqr/residues/IML.xml'
2024-07-02T15:39:30,989   adding 'moleculekit/share/pdb2pqr/residues/KYN.dat'
2024-07-02T15:39:30,990   adding 'moleculekit/share/pdb2pqr/residues/KYN.xml'
2024-07-02T15:39:30,991   adding 'moleculekit/share/pdb2pqr/residues/LME.dat'
2024-07-02T15:39:30,992   adding 'moleculekit/share/pdb2pqr/residues/LME.xml'
2024-07-02T15:39:30,994   adding 'moleculekit/share/pdb2pqr/residues/LMQ.dat'
2024-07-02T15:39:30,995   adding 'moleculekit/share/pdb2pqr/residues/LMQ.xml'
2024-07-02T15:39:30,996   adding 'moleculekit/share/pdb2pqr/residues/LYZ.dat'
2024-07-02T15:39:30,997   adding 'moleculekit/share/pdb2pqr/residues/LYZ.xml'
2024-07-02T15:39:30,998   adding 'moleculekit/share/pdb2pqr/residues/M3L.dat'
2024-07-02T15:39:31,000   adding 'moleculekit/share/pdb2pqr/residues/M3L.xml'
2024-07-02T15:39:31,001   adding 'moleculekit/share/pdb2pqr/residues/ME0.dat'
2024-07-02T15:39:31,002   adding 'moleculekit/share/pdb2pqr/residues/ME0.xml'
2024-07-02T15:39:31,004   adding 'moleculekit/share/pdb2pqr/residues/MEA.dat'
2024-07-02T15:39:31,005   adding 'moleculekit/share/pdb2pqr/residues/MEA.xml'
2024-07-02T15:39:31,006   adding 'moleculekit/share/pdb2pqr/residues/MEN.dat'
2024-07-02T15:39:31,008   adding 'moleculekit/share/pdb2pqr/residues/MEN.xml'
2024-07-02T15:39:31,009   adding 'moleculekit/share/pdb2pqr/residues/MEQ.dat'
2024-07-02T15:39:31,010   adding 'moleculekit/share/pdb2pqr/residues/MEQ.xml'
2024-07-02T15:39:31,011   adding 'moleculekit/share/pdb2pqr/residues/MLE.dat'
2024-07-02T15:39:31,013   adding 'moleculekit/share/pdb2pqr/residues/MLE.xml'
2024-07-02T15:39:31,014   adding 'moleculekit/share/pdb2pqr/residues/MLY.dat'
2024-07-02T15:39:31,015   adding 'moleculekit/share/pdb2pqr/residues/MLY.xml'
2024-07-02T15:39:31,016   adding 'moleculekit/share/pdb2pqr/residues/MLZ.dat'
2024-07-02T15:39:31,018   adding 'moleculekit/share/pdb2pqr/residues/MLZ.xml'
2024-07-02T15:39:31,019   adding 'moleculekit/share/pdb2pqr/residues/MME.dat'
2024-07-02T15:39:31,020   adding 'moleculekit/share/pdb2pqr/residues/MME.xml'
2024-07-02T15:39:31,022   adding 'moleculekit/share/pdb2pqr/residues/MMO.dat'
2024-07-02T15:39:31,023   adding 'moleculekit/share/pdb2pqr/residues/MMO.xml'
2024-07-02T15:39:31,024   adding 'moleculekit/share/pdb2pqr/residues/MVA.dat'
2024-07-02T15:39:31,025   adding 'moleculekit/share/pdb2pqr/residues/MVA.xml'
2024-07-02T15:39:31,027   adding 'moleculekit/share/pdb2pqr/residues/NAL.dat'
2024-07-02T15:39:31,028   adding 'moleculekit/share/pdb2pqr/residues/NAL.xml'
2024-07-02T15:39:31,029   adding 'moleculekit/share/pdb2pqr/residues/NCY.dat'
2024-07-02T15:39:31,030   adding 'moleculekit/share/pdb2pqr/residues/NCY.xml'
2024-07-02T15:39:31,031   adding 'moleculekit/share/pdb2pqr/residues/NLE.dat'
2024-07-02T15:39:31,033   adding 'moleculekit/share/pdb2pqr/residues/NLE.xml'
2024-07-02T15:39:31,034   adding 'moleculekit/share/pdb2pqr/residues/NVA.dat'
2024-07-02T15:39:31,035   adding 'moleculekit/share/pdb2pqr/residues/NVA.xml'
2024-07-02T15:39:31,036   adding 'moleculekit/share/pdb2pqr/residues/NZC.dat'
2024-07-02T15:39:31,038   adding 'moleculekit/share/pdb2pqr/residues/NZC.xml'
2024-07-02T15:39:31,039   adding 'moleculekit/share/pdb2pqr/residues/OCY.dat'
2024-07-02T15:39:31,040   adding 'moleculekit/share/pdb2pqr/residues/OCY.xml'
2024-07-02T15:39:31,041   adding 'moleculekit/share/pdb2pqr/residues/OMX.dat'
2024-07-02T15:39:31,043   adding 'moleculekit/share/pdb2pqr/residues/OMX.xml'
2024-07-02T15:39:31,044   adding 'moleculekit/share/pdb2pqr/residues/ONL.dat'
2024-07-02T15:39:31,045   adding 'moleculekit/share/pdb2pqr/residues/ONL.xml'
2024-07-02T15:39:31,046   adding 'moleculekit/share/pdb2pqr/residues/ORM.dat'
2024-07-02T15:39:31,047   adding 'moleculekit/share/pdb2pqr/residues/ORM.xml'
2024-07-02T15:39:31,049   adding 'moleculekit/share/pdb2pqr/residues/P1L.dat'
2024-07-02T15:39:31,050   adding 'moleculekit/share/pdb2pqr/residues/P1L.xml'
2024-07-02T15:39:31,051   adding 'moleculekit/share/pdb2pqr/residues/PCA.dat'
2024-07-02T15:39:31,053   adding 'moleculekit/share/pdb2pqr/residues/PCA.xml'
2024-07-02T15:39:31,054   adding 'moleculekit/share/pdb2pqr/residues/PRK.dat'
2024-07-02T15:39:31,055   adding 'moleculekit/share/pdb2pqr/residues/PRK.xml'
2024-07-02T15:39:31,056   adding 'moleculekit/share/pdb2pqr/residues/PTR.dat'
2024-07-02T15:39:31,058   adding 'moleculekit/share/pdb2pqr/residues/PTR.xml'
2024-07-02T15:39:31,059   adding 'moleculekit/share/pdb2pqr/residues/SEP.dat'
2024-07-02T15:39:31,060   adding 'moleculekit/share/pdb2pqr/residues/SEP.xml'
2024-07-02T15:39:31,061   adding 'moleculekit/share/pdb2pqr/residues/TPO.dat'
2024-07-02T15:39:31,062   adding 'moleculekit/share/pdb2pqr/residues/TPO.xml'
2024-07-02T15:39:31,064   adding 'moleculekit/share/pdb2pqr/residues/TRO.dat'
2024-07-02T15:39:31,065   adding 'moleculekit/share/pdb2pqr/residues/TRO.xml'
2024-07-02T15:39:31,066   adding 'moleculekit/share/pdb2pqr/residues/TY2.dat'
2024-07-02T15:39:31,067   adding 'moleculekit/share/pdb2pqr/residues/TY2.xml'
2024-07-02T15:39:31,068   adding 'moleculekit/share/pdb2pqr/residues/TYQ.dat'
2024-07-02T15:39:31,070   adding 'moleculekit/share/pdb2pqr/residues/TYQ.xml'
2024-07-02T15:39:31,071   adding 'moleculekit/share/pdb2pqr/residues/YCM.dat'
2024-07-02T15:39:31,072   adding 'moleculekit/share/pdb2pqr/residues/YCM.xml'
2024-07-02T15:39:31,074   adding 'moleculekit/share/pdb2pqr/residues/YNM.dat'
2024-07-02T15:39:31,075   adding 'moleculekit/share/pdb2pqr/residues/YNM.xml'
2024-07-02T15:39:31,077   adding 'moleculekit/smallmol/__init__.py'
2024-07-02T15:39:31,082   adding 'moleculekit/smallmol/smallmol.py'
2024-07-02T15:39:31,084   adding 'moleculekit/smallmol/smallmolcdp.py'
2024-07-02T15:39:31,086   adding 'moleculekit/smallmol/smallmollib.py'
2024-07-02T15:39:31,088   adding 'moleculekit/smallmol/test_smallmol.py'
2024-07-02T15:39:31,090   adding 'moleculekit/smallmol/test_smallmollib.py'
2024-07-02T15:39:31,092   adding 'moleculekit/smallmol/util.py'
2024-07-02T15:39:31,094   adding 'moleculekit/smallmol/tools/__init__.py'
2024-07-02T15:39:31,096   adding 'moleculekit/smallmol/tools/clustering.py'
2024-07-02T15:39:31,097   adding 'moleculekit/smallmol/tools/restrainedembed.py'
2024-07-02T15:39:31,099   adding 'moleculekit/smallmol/tools/test_tools.py'
2024-07-02T15:39:31,190   adding 'moleculekit/tmalign/tmalign_util.cpp'
2024-07-02T15:39:31,199   adding 'moleculekit/tmalign/tmalign_util.pyx'
2024-07-02T15:39:31,200   adding 'moleculekit/tmalign/tmalignlib.pxd'
2024-07-02T15:39:31,202   adding 'moleculekit/tmalign/include/TMAlign.h'
2024-07-02T15:39:31,219   adding 'moleculekit/tmalign/src/TMAlign.cpp'
2024-07-02T15:39:31,223   adding 'moleculekit/tools/__init__.py'
2024-07-02T15:39:31,225   adding 'moleculekit/tools/atomtyper.py'
2024-07-02T15:39:31,227   adding 'moleculekit/tools/autosegment.py'
2024-07-02T15:39:31,229   adding 'moleculekit/tools/crystalpacking.py'
2024-07-02T15:39:31,233   adding 'moleculekit/tools/detect.py'
2024-07-02T15:39:31,235   adding 'moleculekit/tools/docking.py'
2024-07-02T15:39:31,236   adding 'moleculekit/tools/graphalignment.py'
2024-07-02T15:39:31,238   adding 'moleculekit/tools/hhblitsprofile.py'
2024-07-02T15:39:31,240   adding 'moleculekit/tools/modelling.py'
2024-07-02T15:39:31,241   adding 'moleculekit/tools/moleculechecks.py'
2024-07-02T15:39:31,248   adding 'moleculekit/tools/preparation.py'
2024-07-02T15:39:31,250   adding 'moleculekit/tools/preparation_customres.py'
2024-07-02T15:39:31,252   adding 'moleculekit/tools/sequencestructuralalignment.py'
2024-07-02T15:39:31,255   adding 'moleculekit/tools/voxeldescriptors.py'
2024-07-02T15:39:31,257   adding 'moleculekit/tools/obabel_tools/__init__.py'
2024-07-02T15:39:31,259   adding 'moleculekit/tools/obabel_tools/obabel_cli.py'
2024-07-02T15:39:31,353   adding 'moleculekit/wrapping/wrapping.cpp'
2024-07-02T15:39:31,362   adding 'moleculekit/wrapping/wrapping.pyx'
2024-07-02T15:39:31,364   adding 'moleculekit-1.8.36.dist-info/LICENSE'
2024-07-02T15:39:31,366   adding 'moleculekit-1.8.36.dist-info/METADATA'
2024-07-02T15:39:31,367   adding 'moleculekit-1.8.36.dist-info/WHEEL'
2024-07-02T15:39:31,368   adding 'moleculekit-1.8.36.dist-info/top_level.txt'
2024-07-02T15:39:31,373   adding 'moleculekit-1.8.36.dist-info/RECORD'
2024-07-02T15:39:31,568   removing build/bdist.linux-armv7l/wheel
2024-07-02T15:39:31,843   Building wheel for moleculekit (pyproject.toml): finished with status 'done'
2024-07-02T15:39:32,187   Created wheel for moleculekit: filename=moleculekit-1.8.36-cp39-cp39-linux_armv7l.whl size=14926932 sha256=671167765eb458b97e36ab9bd793dd20c4eec64fd47d38eba8e093b8427307b1
2024-07-02T15:39:32,188   Stored in directory: /tmp/pip-ephem-wheel-cache-ozjiex57/wheels/21/3c/e7/39ea87aacdb847a34b5c29ea38348e1e337440ec2f76073b0d
2024-07-02T15:39:32,216 Successfully built moleculekit
2024-07-02T15:39:32,598 Removed build tracker: '/tmp/pip-build-tracker-baife35b'