2024-07-03T14:19:59,820 Created temporary directory: /tmp/pip-build-tracker-0lpy762e 2024-07-03T14:19:59,821 Initialized build tracking at /tmp/pip-build-tracker-0lpy762e 2024-07-03T14:19:59,822 Created build tracker: /tmp/pip-build-tracker-0lpy762e 2024-07-03T14:19:59,822 Entered build tracker: /tmp/pip-build-tracker-0lpy762e 2024-07-03T14:19:59,823 Created temporary directory: /tmp/pip-wheel-c0zzzulu 2024-07-03T14:19:59,827 Created temporary directory: /tmp/pip-ephem-wheel-cache-2lccdmbg 2024-07-03T14:19:59,852 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2024-07-03T14:19:59,856 2 location(s) to search for versions of galaxy-tool-util: 2024-07-03T14:19:59,856 * https://pypi.org/simple/galaxy-tool-util/ 2024-07-03T14:19:59,856 * https://www.piwheels.org/simple/galaxy-tool-util/ 2024-07-03T14:19:59,857 Fetching project page and analyzing links: https://pypi.org/simple/galaxy-tool-util/ 2024-07-03T14:19:59,857 Getting page 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https://www.piwheels.org/simple/galaxy-tool-util/galaxy_tool_util-19.9.0.dev1-py2.py3-none-any.whl#sha256=7ff286949cb2c87a462ef1360b4ff58a3d0fc953dfde646f2b23bc9438d63ada (from https://www.piwheels.org/simple/galaxy-tool-util/) 2024-07-03T14:20:00,395 Skipping link: No binaries permitted for galaxy-tool-util: https://www.piwheels.org/simple/galaxy-tool-util/galaxy_tool_util-19.9.0.dev0-py3-none-any.whl#sha256=f3257799e554be8d31f640710ed8672994323cbfda020a3648775c6d156fad4a (from https://www.piwheels.org/simple/galaxy-tool-util/) 2024-07-03T14:20:00,395 Skipping link: not a file: https://www.piwheels.org/simple/galaxy-tool-util/ 2024-07-03T14:20:00,396 Skipping link: not a file: https://pypi.org/simple/galaxy-tool-util/ 2024-07-03T14:20:00,421 Given no hashes to check 1 links for project 'galaxy-tool-util': discarding no candidates 2024-07-03T14:20:00,440 Collecting galaxy-tool-util==24.1.1 2024-07-03T14:20:00,443 Created temporary directory: /tmp/pip-unpack-dj_j9vo6 2024-07-03T14:20:00,731 Downloading galaxy_tool_util-24.1.1.tar.gz (377 kB) 2024-07-03T14:20:01,158 Added galaxy-tool-util==24.1.1 from https://files.pythonhosted.org/packages/dc/4e/b12f14bf7c322e9b639211acf3d3b605619b349876d35e50c3c0fbed7af5/galaxy_tool_util-24.1.1.tar.gz to build tracker '/tmp/pip-build-tracker-0lpy762e' 2024-07-03T14:20:01,161 Created temporary directory: /tmp/pip-build-env-6ejjub6j 2024-07-03T14:20:01,165 Installing build dependencies: started 2024-07-03T14:20:01,166 Running command pip subprocess to install build dependencies 2024-07-03T14:20:02,341 Using pip 24.0 from /usr/local/lib/python3.11/dist-packages/pip (python 3.11) 2024-07-03T14:20:02,850 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2024-07-03T14:20:04,297 Collecting setuptools 2024-07-03T14:20:04,311 Using cached https://www.piwheels.org/simple/setuptools/setuptools-70.2.0-py3-none-any.whl (930 kB) 2024-07-03T14:20:06,961 Installing collected packages: setuptools 2024-07-03T14:20:09,542 Successfully installed setuptools-70.2.0 2024-07-03T14:20:09,846 [notice] A new release of pip is available: 24.0 -> 24.1.1 2024-07-03T14:20:09,847 [notice] To update, run: python3 -m pip install --upgrade pip 2024-07-03T14:20:10,114 Installing build dependencies: finished with status 'done' 2024-07-03T14:20:10,117 Getting requirements to build wheel: started 2024-07-03T14:20:10,118 Running command Getting requirements to build wheel 2024-07-03T14:20:10,789 running egg_info 2024-07-03T14:20:10,792 writing galaxy_tool_util.egg-info/PKG-INFO 2024-07-03T14:20:10,800 writing dependency_links to galaxy_tool_util.egg-info/dependency_links.txt 2024-07-03T14:20:10,802 writing entry points to galaxy_tool_util.egg-info/entry_points.txt 2024-07-03T14:20:10,805 writing requirements to galaxy_tool_util.egg-info/requires.txt 2024-07-03T14:20:10,807 writing top-level names to galaxy_tool_util.egg-info/top_level.txt 2024-07-03T14:20:10,849 reading manifest file 'galaxy_tool_util.egg-info/SOURCES.txt' 2024-07-03T14:20:10,855 reading manifest template 'MANIFEST.in' 2024-07-03T14:20:10,860 adding license file 'LICENSE' 2024-07-03T14:20:10,868 writing manifest file 'galaxy_tool_util.egg-info/SOURCES.txt' 2024-07-03T14:20:10,956 Getting requirements to build wheel: finished with status 'done' 2024-07-03T14:20:10,960 Created temporary directory: /tmp/pip-modern-metadata-7aus_3t5 2024-07-03T14:20:10,962 Preparing metadata (pyproject.toml): started 2024-07-03T14:20:10,963 Running command Preparing metadata (pyproject.toml) 2024-07-03T14:20:11,542 running dist_info 2024-07-03T14:20:11,547 creating /tmp/pip-modern-metadata-7aus_3t5/galaxy_tool_util.egg-info 2024-07-03T14:20:11,550 writing /tmp/pip-modern-metadata-7aus_3t5/galaxy_tool_util.egg-info/PKG-INFO 2024-07-03T14:20:11,558 writing dependency_links to /tmp/pip-modern-metadata-7aus_3t5/galaxy_tool_util.egg-info/dependency_links.txt 2024-07-03T14:20:11,560 writing entry points to /tmp/pip-modern-metadata-7aus_3t5/galaxy_tool_util.egg-info/entry_points.txt 2024-07-03T14:20:11,563 writing requirements to /tmp/pip-modern-metadata-7aus_3t5/galaxy_tool_util.egg-info/requires.txt 2024-07-03T14:20:11,564 writing top-level names to /tmp/pip-modern-metadata-7aus_3t5/galaxy_tool_util.egg-info/top_level.txt 2024-07-03T14:20:11,565 writing manifest file '/tmp/pip-modern-metadata-7aus_3t5/galaxy_tool_util.egg-info/SOURCES.txt' 2024-07-03T14:20:11,602 reading manifest file '/tmp/pip-modern-metadata-7aus_3t5/galaxy_tool_util.egg-info/SOURCES.txt' 2024-07-03T14:20:11,604 reading manifest template 'MANIFEST.in' 2024-07-03T14:20:11,608 adding license file 'LICENSE' 2024-07-03T14:20:11,615 writing manifest file '/tmp/pip-modern-metadata-7aus_3t5/galaxy_tool_util.egg-info/SOURCES.txt' 2024-07-03T14:20:11,616 creating '/tmp/pip-modern-metadata-7aus_3t5/galaxy_tool_util-24.1.1.dist-info' 2024-07-03T14:20:11,752 Preparing metadata (pyproject.toml): finished with status 'done' 2024-07-03T14:20:11,758 Source in /tmp/pip-wheel-c0zzzulu/galaxy-tool-util_d2dcabbf16fb451cb040df6be9554457 has version 24.1.1, which satisfies requirement galaxy-tool-util==24.1.1 from https://files.pythonhosted.org/packages/dc/4e/b12f14bf7c322e9b639211acf3d3b605619b349876d35e50c3c0fbed7af5/galaxy_tool_util-24.1.1.tar.gz 2024-07-03T14:20:11,759 Removed galaxy-tool-util==24.1.1 from https://files.pythonhosted.org/packages/dc/4e/b12f14bf7c322e9b639211acf3d3b605619b349876d35e50c3c0fbed7af5/galaxy_tool_util-24.1.1.tar.gz from build tracker '/tmp/pip-build-tracker-0lpy762e' 2024-07-03T14:20:11,767 Created temporary directory: /tmp/pip-unpack-yafqzp33 2024-07-03T14:20:11,768 Created temporary directory: /tmp/pip-unpack-z46zrgwo 2024-07-03T14:20:11,807 Building wheels for collected packages: galaxy-tool-util 2024-07-03T14:20:11,811 Created temporary directory: /tmp/pip-wheel-u7ii7_vg 2024-07-03T14:20:11,811 Destination directory: /tmp/pip-wheel-u7ii7_vg 2024-07-03T14:20:11,813 Building wheel for galaxy-tool-util (pyproject.toml): started 2024-07-03T14:20:11,815 Running command Building wheel for galaxy-tool-util (pyproject.toml) 2024-07-03T14:20:12,388 running bdist_wheel 2024-07-03T14:20:12,427 running build 2024-07-03T14:20:12,427 running build_py 2024-07-03T14:20:12,434 creating build 2024-07-03T14:20:12,434 creating build/lib 2024-07-03T14:20:12,435 creating build/lib/galaxy 2024-07-03T14:20:12,436 copying galaxy/__init__.py -> build/lib/galaxy 2024-07-03T14:20:12,439 creating build/lib/galaxy/tool_util 2024-07-03T14:20:12,440 copying galaxy/tool_util/fetcher.py -> build/lib/galaxy/tool_util 2024-07-03T14:20:12,442 copying galaxy/tool_util/loader_directory.py -> build/lib/galaxy/tool_util 2024-07-03T14:20:12,444 copying galaxy/tool_util/version.py -> build/lib/galaxy/tool_util 2024-07-03T14:20:12,446 copying galaxy/tool_util/output_checker.py -> build/lib/galaxy/tool_util 2024-07-03T14:20:12,449 copying galaxy/tool_util/loader.py -> build/lib/galaxy/tool_util 2024-07-03T14:20:12,451 copying galaxy/tool_util/provided_metadata.py -> build/lib/galaxy/tool_util 2024-07-03T14:20:12,453 copying galaxy/tool_util/edam_util.py -> build/lib/galaxy/tool_util 2024-07-03T14:20:12,455 copying galaxy/tool_util/__init__.py -> build/lib/galaxy/tool_util 2024-07-03T14:20:12,456 copying galaxy/tool_util/lint.py -> build/lib/galaxy/tool_util 2024-07-03T14:20:12,459 creating build/lib/galaxy/tool_util/toolbox 2024-07-03T14:20:12,460 copying galaxy/tool_util/toolbox/panel.py -> build/lib/galaxy/tool_util/toolbox 2024-07-03T14:20:12,462 copying galaxy/tool_util/toolbox/integrated_panel.py -> build/lib/galaxy/tool_util/toolbox 2024-07-03T14:20:12,464 copying galaxy/tool_util/toolbox/base.py -> build/lib/galaxy/tool_util/toolbox 2024-07-03T14:20:12,467 copying galaxy/tool_util/toolbox/parser.py -> build/lib/galaxy/tool_util/toolbox 2024-07-03T14:20:12,469 copying galaxy/tool_util/toolbox/__init__.py -> build/lib/galaxy/tool_util/toolbox 2024-07-03T14:20:12,471 copying galaxy/tool_util/toolbox/watcher.py -> build/lib/galaxy/tool_util/toolbox 2024-07-03T14:20:12,474 creating build/lib/galaxy/tool_util/locations 2024-07-03T14:20:12,474 copying galaxy/tool_util/locations/dockstore.py -> build/lib/galaxy/tool_util/locations 2024-07-03T14:20:12,476 copying galaxy/tool_util/locations/__init__.py -> build/lib/galaxy/tool_util/locations 2024-07-03T14:20:12,478 copying galaxy/tool_util/locations/http.py -> build/lib/galaxy/tool_util/locations 2024-07-03T14:20:12,479 copying galaxy/tool_util/locations/file.py -> build/lib/galaxy/tool_util/locations 2024-07-03T14:20:12,482 creating build/lib/galaxy/tool_util/linters 2024-07-03T14:20:12,482 copying galaxy/tool_util/linters/general.py -> build/lib/galaxy/tool_util/linters 2024-07-03T14:20:12,485 copying galaxy/tool_util/linters/help.py -> build/lib/galaxy/tool_util/linters 2024-07-03T14:20:12,487 copying galaxy/tool_util/linters/cwl.py -> build/lib/galaxy/tool_util/linters 2024-07-03T14:20:12,488 copying galaxy/tool_util/linters/output.py -> build/lib/galaxy/tool_util/linters 2024-07-03T14:20:12,491 copying galaxy/tool_util/linters/command.py -> build/lib/galaxy/tool_util/linters 2024-07-03T14:20:12,492 copying galaxy/tool_util/linters/xml_order.py -> build/lib/galaxy/tool_util/linters 2024-07-03T14:20:12,494 copying galaxy/tool_util/linters/inputs.py -> build/lib/galaxy/tool_util/linters 2024-07-03T14:20:12,497 copying galaxy/tool_util/linters/stdio.py -> build/lib/galaxy/tool_util/linters 2024-07-03T14:20:12,499 copying galaxy/tool_util/linters/__init__.py -> build/lib/galaxy/tool_util/linters 2024-07-03T14:20:12,500 copying galaxy/tool_util/linters/_util.py -> build/lib/galaxy/tool_util/linters 2024-07-03T14:20:12,502 copying galaxy/tool_util/linters/xsd.py -> build/lib/galaxy/tool_util/linters 2024-07-03T14:20:12,504 copying galaxy/tool_util/linters/citations.py -> build/lib/galaxy/tool_util/linters 2024-07-03T14:20:12,505 copying galaxy/tool_util/linters/tests.py -> build/lib/galaxy/tool_util/linters 2024-07-03T14:20:12,509 creating build/lib/galaxy/tool_util/deps 2024-07-03T14:20:12,510 copying galaxy/tool_util/deps/brew_util.py -> build/lib/galaxy/tool_util/deps 2024-07-03T14:20:12,511 copying galaxy/tool_util/deps/conda_compat.py -> build/lib/galaxy/tool_util/deps 2024-07-03T14:20:12,513 copying galaxy/tool_util/deps/conda_util.py -> build/lib/galaxy/tool_util/deps 2024-07-03T14:20:12,516 copying galaxy/tool_util/deps/singularity_util.py -> build/lib/galaxy/tool_util/deps 2024-07-03T14:20:12,517 copying galaxy/tool_util/deps/containers.py -> build/lib/galaxy/tool_util/deps 2024-07-03T14:20:12,520 copying galaxy/tool_util/deps/installable.py -> build/lib/galaxy/tool_util/deps 2024-07-03T14:20:12,521 copying galaxy/tool_util/deps/dockerfiles.py -> build/lib/galaxy/tool_util/deps 2024-07-03T14:20:12,523 copying galaxy/tool_util/deps/views.py -> build/lib/galaxy/tool_util/deps 2024-07-03T14:20:12,525 copying galaxy/tool_util/deps/__init__.py -> build/lib/galaxy/tool_util/deps 2024-07-03T14:20:12,528 copying galaxy/tool_util/deps/brew_exts.py -> build/lib/galaxy/tool_util/deps 2024-07-03T14:20:12,531 copying galaxy/tool_util/deps/container_volumes.py -> build/lib/galaxy/tool_util/deps 2024-07-03T14:20:12,532 copying galaxy/tool_util/deps/dependencies.py -> build/lib/galaxy/tool_util/deps 2024-07-03T14:20:12,534 copying galaxy/tool_util/deps/container_classes.py -> build/lib/galaxy/tool_util/deps 2024-07-03T14:20:12,537 copying galaxy/tool_util/deps/requirements.py -> build/lib/galaxy/tool_util/deps 2024-07-03T14:20:12,539 copying galaxy/tool_util/deps/docker_util.py -> build/lib/galaxy/tool_util/deps 2024-07-03T14:20:12,541 copying galaxy/tool_util/deps/commands.py -> build/lib/galaxy/tool_util/deps 2024-07-03T14:20:12,543 creating build/lib/galaxy/tool_util/client 2024-07-03T14:20:12,543 copying galaxy/tool_util/client/staging.py -> build/lib/galaxy/tool_util/client 2024-07-03T14:20:12,546 copying galaxy/tool_util/client/__init__.py -> build/lib/galaxy/tool_util/client 2024-07-03T14:20:12,548 creating build/lib/galaxy/tool_util/unittest_utils 2024-07-03T14:20:12,549 copying galaxy/tool_util/unittest_utils/interactor.py -> build/lib/galaxy/tool_util/unittest_utils 2024-07-03T14:20:12,551 copying galaxy/tool_util/unittest_utils/sample_data.py -> build/lib/galaxy/tool_util/unittest_utils 2024-07-03T14:20:12,552 copying galaxy/tool_util/unittest_utils/__init__.py -> build/lib/galaxy/tool_util/unittest_utils 2024-07-03T14:20:12,554 creating build/lib/galaxy/tool_util/ontologies 2024-07-03T14:20:12,555 copying galaxy/tool_util/ontologies/ontology_data.py -> build/lib/galaxy/tool_util/ontologies 2024-07-03T14:20:12,557 copying galaxy/tool_util/ontologies/__init__.py -> build/lib/galaxy/tool_util/ontologies 2024-07-03T14:20:12,559 creating build/lib/galaxy/tool_util/verify 2024-07-03T14:20:12,560 copying galaxy/tool_util/verify/interactor.py -> build/lib/galaxy/tool_util/verify 2024-07-03T14:20:12,563 copying galaxy/tool_util/verify/wait.py -> build/lib/galaxy/tool_util/verify 2024-07-03T14:20:12,565 copying galaxy/tool_util/verify/__init__.py -> build/lib/galaxy/tool_util/verify 2024-07-03T14:20:12,568 copying galaxy/tool_util/verify/test_data.py -> build/lib/galaxy/tool_util/verify 2024-07-03T14:20:12,570 copying galaxy/tool_util/verify/script.py -> build/lib/galaxy/tool_util/verify 2024-07-03T14:20:12,573 creating build/lib/galaxy/tool_util/biotools 2024-07-03T14:20:12,574 copying galaxy/tool_util/biotools/interface.py -> build/lib/galaxy/tool_util/biotools 2024-07-03T14:20:12,576 copying galaxy/tool_util/biotools/__init__.py -> build/lib/galaxy/tool_util/biotools 2024-07-03T14:20:12,577 copying galaxy/tool_util/biotools/source.py -> build/lib/galaxy/tool_util/biotools 2024-07-03T14:20:12,579 creating build/lib/galaxy/tool_util/parser 2024-07-03T14:20:12,580 copying galaxy/tool_util/parser/util.py -> build/lib/galaxy/tool_util/parser 2024-07-03T14:20:12,582 copying galaxy/tool_util/parser/interface.py -> build/lib/galaxy/tool_util/parser 2024-07-03T14:20:12,585 copying galaxy/tool_util/parser/factory.py -> build/lib/galaxy/tool_util/parser 2024-07-03T14:20:12,586 copying galaxy/tool_util/parser/xml.py -> build/lib/galaxy/tool_util/parser 2024-07-03T14:20:12,590 copying galaxy/tool_util/parser/cwl.py -> build/lib/galaxy/tool_util/parser 2024-07-03T14:20:12,592 copying galaxy/tool_util/parser/output_collection_def.py -> build/lib/galaxy/tool_util/parser 2024-07-03T14:20:12,594 copying galaxy/tool_util/parser/stdio.py -> build/lib/galaxy/tool_util/parser 2024-07-03T14:20:12,596 copying galaxy/tool_util/parser/__init__.py -> build/lib/galaxy/tool_util/parser 2024-07-03T14:20:12,597 copying galaxy/tool_util/parser/output_objects.py -> build/lib/galaxy/tool_util/parser 2024-07-03T14:20:12,600 copying galaxy/tool_util/parser/yaml.py -> build/lib/galaxy/tool_util/parser 2024-07-03T14:20:12,602 copying galaxy/tool_util/parser/output_actions.py -> build/lib/galaxy/tool_util/parser 2024-07-03T14:20:12,605 creating build/lib/galaxy/tool_util/cwl 2024-07-03T14:20:12,607 copying galaxy/tool_util/cwl/util.py -> build/lib/galaxy/tool_util/cwl 2024-07-03T14:20:12,609 copying galaxy/tool_util/cwl/runnable.py -> build/lib/galaxy/tool_util/cwl 2024-07-03T14:20:12,611 copying galaxy/tool_util/cwl/runtime_actions.py -> build/lib/galaxy/tool_util/cwl 2024-07-03T14:20:12,613 copying galaxy/tool_util/cwl/cwltool_deps.py -> build/lib/galaxy/tool_util/cwl 2024-07-03T14:20:12,615 copying galaxy/tool_util/cwl/representation.py -> build/lib/galaxy/tool_util/cwl 2024-07-03T14:20:12,617 copying galaxy/tool_util/cwl/parser.py -> build/lib/galaxy/tool_util/cwl 2024-07-03T14:20:12,620 copying galaxy/tool_util/cwl/__init__.py -> build/lib/galaxy/tool_util/cwl 2024-07-03T14:20:12,621 copying galaxy/tool_util/cwl/schema.py -> build/lib/galaxy/tool_util/cwl 2024-07-03T14:20:12,623 creating build/lib/galaxy/tool_util/data 2024-07-03T14:20:12,624 copying galaxy/tool_util/data/__init__.py -> build/lib/galaxy/tool_util/data 2024-07-03T14:20:12,627 copying galaxy/tool_util/data/_schema.py -> build/lib/galaxy/tool_util/data 2024-07-03T14:20:12,629 creating build/lib/galaxy/tool_util/toolbox/lineages 2024-07-03T14:20:12,629 copying galaxy/tool_util/toolbox/lineages/interface.py -> build/lib/galaxy/tool_util/toolbox/lineages 2024-07-03T14:20:12,631 copying galaxy/tool_util/toolbox/lineages/factory.py -> build/lib/galaxy/tool_util/toolbox/lineages 2024-07-03T14:20:12,633 copying galaxy/tool_util/toolbox/lineages/__init__.py -> build/lib/galaxy/tool_util/toolbox/lineages 2024-07-03T14:20:12,635 creating build/lib/galaxy/tool_util/toolbox/filters 2024-07-03T14:20:12,636 copying galaxy/tool_util/toolbox/filters/__init__.py -> build/lib/galaxy/tool_util/toolbox/filters 2024-07-03T14:20:12,638 creating build/lib/galaxy/tool_util/toolbox/views 2024-07-03T14:20:12,639 copying galaxy/tool_util/toolbox/views/interface.py -> build/lib/galaxy/tool_util/toolbox/views 2024-07-03T14:20:12,641 copying galaxy/tool_util/toolbox/views/definitions.py -> build/lib/galaxy/tool_util/toolbox/views 2024-07-03T14:20:12,643 copying galaxy/tool_util/toolbox/views/sources.py -> build/lib/galaxy/tool_util/toolbox/views 2024-07-03T14:20:12,644 copying galaxy/tool_util/toolbox/views/edam.py -> build/lib/galaxy/tool_util/toolbox/views 2024-07-03T14:20:12,646 copying galaxy/tool_util/toolbox/views/__init__.py -> build/lib/galaxy/tool_util/toolbox/views 2024-07-03T14:20:12,648 copying galaxy/tool_util/toolbox/views/static.py -> build/lib/galaxy/tool_util/toolbox/views 2024-07-03T14:20:12,651 creating build/lib/galaxy/tool_util/deps/resolvers 2024-07-03T14:20:12,652 copying galaxy/tool_util/deps/resolvers/homebrew.py -> build/lib/galaxy/tool_util/deps/resolvers 2024-07-03T14:20:12,654 copying galaxy/tool_util/deps/resolvers/modules.py -> build/lib/galaxy/tool_util/deps/resolvers 2024-07-03T14:20:12,656 copying galaxy/tool_util/deps/resolvers/conda.py -> build/lib/galaxy/tool_util/deps/resolvers 2024-07-03T14:20:12,658 copying galaxy/tool_util/deps/resolvers/brewed_tool_shed_packages.py -> build/lib/galaxy/tool_util/deps/resolvers 2024-07-03T14:20:12,660 copying galaxy/tool_util/deps/resolvers/tool_shed_packages.py -> build/lib/galaxy/tool_util/deps/resolvers 2024-07-03T14:20:12,662 copying galaxy/tool_util/deps/resolvers/__init__.py -> build/lib/galaxy/tool_util/deps/resolvers 2024-07-03T14:20:12,664 copying galaxy/tool_util/deps/resolvers/galaxy_packages.py -> build/lib/galaxy/tool_util/deps/resolvers 2024-07-03T14:20:12,667 copying galaxy/tool_util/deps/resolvers/lmod.py -> build/lib/galaxy/tool_util/deps/resolvers 2024-07-03T14:20:12,669 copying galaxy/tool_util/deps/resolvers/resolver_mixins.py -> build/lib/galaxy/tool_util/deps/resolvers 2024-07-03T14:20:12,670 copying galaxy/tool_util/deps/resolvers/unlinked_tool_shed_packages.py -> build/lib/galaxy/tool_util/deps/resolvers 2024-07-03T14:20:12,673 creating build/lib/galaxy/tool_util/deps/container_resolvers 2024-07-03T14:20:12,674 copying galaxy/tool_util/deps/container_resolvers/__init__.py -> build/lib/galaxy/tool_util/deps/container_resolvers 2024-07-03T14:20:12,676 copying galaxy/tool_util/deps/container_resolvers/mulled.py -> build/lib/galaxy/tool_util/deps/container_resolvers 2024-07-03T14:20:12,679 copying galaxy/tool_util/deps/container_resolvers/test.py -> build/lib/galaxy/tool_util/deps/container_resolvers 2024-07-03T14:20:12,680 copying galaxy/tool_util/deps/container_resolvers/explicit.py -> build/lib/galaxy/tool_util/deps/container_resolvers 2024-07-03T14:20:12,683 creating build/lib/galaxy/tool_util/deps/mulled 2024-07-03T14:20:12,684 copying galaxy/tool_util/deps/mulled/util.py -> build/lib/galaxy/tool_util/deps/mulled 2024-07-03T14:20:12,687 copying galaxy/tool_util/deps/mulled/mulled_build.py -> build/lib/galaxy/tool_util/deps/mulled 2024-07-03T14:20:12,689 copying galaxy/tool_util/deps/mulled/_cli.py -> build/lib/galaxy/tool_util/deps/mulled 2024-07-03T14:20:12,690 copying galaxy/tool_util/deps/mulled/mulled_search.py -> build/lib/galaxy/tool_util/deps/mulled 2024-07-03T14:20:12,692 copying galaxy/tool_util/deps/mulled/get_tests.py -> build/lib/galaxy/tool_util/deps/mulled 2024-07-03T14:20:12,694 copying galaxy/tool_util/deps/mulled/mulled_build_files.py -> build/lib/galaxy/tool_util/deps/mulled 2024-07-03T14:20:12,697 copying galaxy/tool_util/deps/mulled/mulled_hash.py -> build/lib/galaxy/tool_util/deps/mulled 2024-07-03T14:20:12,698 copying galaxy/tool_util/deps/mulled/mulled_update_singularity_containers.py -> build/lib/galaxy/tool_util/deps/mulled 2024-07-03T14:20:12,701 copying galaxy/tool_util/deps/mulled/mulled_build_channel.py -> build/lib/galaxy/tool_util/deps/mulled 2024-07-03T14:20:12,703 copying galaxy/tool_util/deps/mulled/__init__.py -> build/lib/galaxy/tool_util/deps/mulled 2024-07-03T14:20:12,704 copying galaxy/tool_util/deps/mulled/mulled_build_tool.py -> build/lib/galaxy/tool_util/deps/mulled 2024-07-03T14:20:12,706 copying galaxy/tool_util/deps/mulled/mulled_list.py -> build/lib/galaxy/tool_util/deps/mulled 2024-07-03T14:20:12,709 creating build/lib/galaxy/tool_util/verify/asserts 2024-07-03T14:20:12,709 copying galaxy/tool_util/verify/asserts/image.py -> build/lib/galaxy/tool_util/verify/asserts 2024-07-03T14:20:12,712 copying galaxy/tool_util/verify/asserts/xml.py -> build/lib/galaxy/tool_util/verify/asserts 2024-07-03T14:20:12,714 copying galaxy/tool_util/verify/asserts/size.py -> build/lib/galaxy/tool_util/verify/asserts 2024-07-03T14:20:12,716 copying galaxy/tool_util/verify/asserts/tabular.py -> build/lib/galaxy/tool_util/verify/asserts 2024-07-03T14:20:12,717 copying galaxy/tool_util/verify/asserts/__init__.py -> build/lib/galaxy/tool_util/verify/asserts 2024-07-03T14:20:12,720 copying galaxy/tool_util/verify/asserts/text.py -> build/lib/galaxy/tool_util/verify/asserts 2024-07-03T14:20:12,722 copying galaxy/tool_util/verify/asserts/json.py -> build/lib/galaxy/tool_util/verify/asserts 2024-07-03T14:20:12,723 copying galaxy/tool_util/verify/asserts/_util.py -> build/lib/galaxy/tool_util/verify/asserts 2024-07-03T14:20:12,725 copying galaxy/tool_util/verify/asserts/hdf5.py -> build/lib/galaxy/tool_util/verify/asserts 2024-07-03T14:20:12,727 copying galaxy/tool_util/verify/asserts/archive.py -> build/lib/galaxy/tool_util/verify/asserts 2024-07-03T14:20:12,729 creating build/lib/galaxy/tool_util/data/bundles 2024-07-03T14:20:12,730 copying galaxy/tool_util/data/bundles/models.py -> build/lib/galaxy/tool_util/data/bundles 2024-07-03T14:20:12,732 copying galaxy/tool_util/data/bundles/__init__.py -> build/lib/galaxy/tool_util/data/bundles 2024-07-03T14:20:12,734 running egg_info 2024-07-03T14:20:12,737 writing galaxy_tool_util.egg-info/PKG-INFO 2024-07-03T14:20:12,744 writing dependency_links to galaxy_tool_util.egg-info/dependency_links.txt 2024-07-03T14:20:12,746 writing entry points to galaxy_tool_util.egg-info/entry_points.txt 2024-07-03T14:20:12,749 writing requirements to galaxy_tool_util.egg-info/requires.txt 2024-07-03T14:20:12,750 writing top-level names to galaxy_tool_util.egg-info/top_level.txt 2024-07-03T14:20:12,779 reading manifest file 'galaxy_tool_util.egg-info/SOURCES.txt' 2024-07-03T14:20:12,784 reading manifest template 'MANIFEST.in' 2024-07-03T14:20:12,788 adding license file 'LICENSE' 2024-07-03T14:20:12,796 writing manifest file 'galaxy_tool_util.egg-info/SOURCES.txt' 2024-07-03T14:20:12,800 /tmp/pip-build-env-6ejjub6j/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'galaxy.tool_util.xsd' is absent from the `packages` configuration. 2024-07-03T14:20:12,800 !! 2024-07-03T14:20:12,802 ******************************************************************************** 2024-07-03T14:20:12,803 ############################ 2024-07-03T14:20:12,803 # Package would be ignored # 2024-07-03T14:20:12,804 ############################ 2024-07-03T14:20:12,805 Python recognizes 'galaxy.tool_util.xsd' as an importable package[^1], 2024-07-03T14:20:12,805 but it is absent from setuptools' `packages` configuration. 2024-07-03T14:20:12,806 This leads to an ambiguous overall configuration. If you want to distribute this 2024-07-03T14:20:12,806 package, please make sure that 'galaxy.tool_util.xsd' is explicitly added 2024-07-03T14:20:12,807 to the `packages` configuration field. 2024-07-03T14:20:12,808 Alternatively, you can also rely on setuptools' discovery methods 2024-07-03T14:20:12,808 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-07-03T14:20:12,809 instead of `find_packages(...)`/`find:`). 2024-07-03T14:20:12,809 You can read more about "package discovery" on setuptools documentation page: 2024-07-03T14:20:12,810 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-07-03T14:20:12,811 If you don't want 'galaxy.tool_util.xsd' to be distributed and are 2024-07-03T14:20:12,812 already explicitly excluding 'galaxy.tool_util.xsd' via 2024-07-03T14:20:12,812 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-07-03T14:20:12,813 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-07-03T14:20:12,813 combination with a more fine grained `package-data` configuration. 2024-07-03T14:20:12,814 You can read more about "package data files" on setuptools documentation page: 2024-07-03T14:20:12,815 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-07-03T14:20:12,816 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-07-03T14:20:12,817 even if it does not contain any `.py` files. 2024-07-03T14:20:12,817 On the other hand, currently there is no concept of package data 2024-07-03T14:20:12,818 directory, all directories are treated like packages. 2024-07-03T14:20:12,818 ******************************************************************************** 2024-07-03T14:20:12,819 !! 2024-07-03T14:20:12,820 check.warn(importable) 2024-07-03T14:20:12,820 copying galaxy/py.typed -> build/lib/galaxy 2024-07-03T14:20:12,821 creating build/lib/galaxy/tool_util/xsd 2024-07-03T14:20:12,821 copying galaxy/tool_util/xsd/LICENSE -> build/lib/galaxy/tool_util/xsd 2024-07-03T14:20:12,822 copying galaxy/tool_util/xsd/README.md -> build/lib/galaxy/tool_util/xsd 2024-07-03T14:20:12,822 copying galaxy/tool_util/xsd/galaxy.jxb -> build/lib/galaxy/tool_util/xsd 2024-07-03T14:20:12,823 copying galaxy/tool_util/xsd/galaxy.xsd -> build/lib/galaxy/tool_util/xsd 2024-07-03T14:20:12,830 copying galaxy/tool_util/ontologies/biotools_mappings.tsv -> build/lib/galaxy/tool_util/ontologies 2024-07-03T14:20:12,834 copying galaxy/tool_util/ontologies/edam_operation_mappings.tsv -> build/lib/galaxy/tool_util/ontologies 2024-07-03T14:20:12,836 copying galaxy/tool_util/ontologies/edam_topic_mappings.tsv -> build/lib/galaxy/tool_util/ontologies 2024-07-03T14:20:12,839 copying galaxy/tool_util/verify/test_config.sample.yml -> build/lib/galaxy/tool_util/verify 2024-07-03T14:20:12,841 copying galaxy/tool_util/toolbox/filters/examples.py.sample -> build/lib/galaxy/tool_util/toolbox/filters 2024-07-03T14:20:12,843 copying galaxy/tool_util/deps/resolvers/default_conda_mapping.yml -> build/lib/galaxy/tool_util/deps/resolvers 2024-07-03T14:20:12,846 copying galaxy/tool_util/deps/mulled/invfile.lua -> build/lib/galaxy/tool_util/deps/mulled 2024-07-03T14:20:12,867 installing to build/bdist.linux-armv7l/wheel 2024-07-03T14:20:12,867 running install 2024-07-03T14:20:12,893 running install_lib 2024-07-03T14:20:12,899 creating build/bdist.linux-armv7l 2024-07-03T14:20:12,900 creating build/bdist.linux-armv7l/wheel 2024-07-03T14:20:12,902 creating build/bdist.linux-armv7l/wheel/galaxy 2024-07-03T14:20:12,903 copying build/lib/galaxy/py.typed -> build/bdist.linux-armv7l/wheel/galaxy 2024-07-03T14:20:12,905 copying build/lib/galaxy/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy 2024-07-03T14:20:12,907 creating build/bdist.linux-armv7l/wheel/galaxy/tool_util 2024-07-03T14:20:12,909 creating build/bdist.linux-armv7l/wheel/galaxy/tool_util/toolbox 2024-07-03T14:20:12,911 copying build/lib/galaxy/tool_util/toolbox/panel.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/toolbox 2024-07-03T14:20:12,913 copying build/lib/galaxy/tool_util/toolbox/integrated_panel.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/toolbox 2024-07-03T14:20:12,916 creating build/bdist.linux-armv7l/wheel/galaxy/tool_util/toolbox/lineages 2024-07-03T14:20:12,917 copying build/lib/galaxy/tool_util/toolbox/lineages/interface.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/toolbox/lineages 2024-07-03T14:20:12,920 copying build/lib/galaxy/tool_util/toolbox/lineages/factory.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/toolbox/lineages 2024-07-03T14:20:12,922 copying build/lib/galaxy/tool_util/toolbox/lineages/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/toolbox/lineages 2024-07-03T14:20:12,924 creating build/bdist.linux-armv7l/wheel/galaxy/tool_util/toolbox/filters 2024-07-03T14:20:12,925 copying build/lib/galaxy/tool_util/toolbox/filters/examples.py.sample -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/toolbox/filters 2024-07-03T14:20:12,928 copying build/lib/galaxy/tool_util/toolbox/filters/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/toolbox/filters 2024-07-03T14:20:12,930 copying build/lib/galaxy/tool_util/toolbox/base.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/toolbox 2024-07-03T14:20:12,934 copying build/lib/galaxy/tool_util/toolbox/parser.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/toolbox 2024-07-03T14:20:12,937 creating build/bdist.linux-armv7l/wheel/galaxy/tool_util/toolbox/views 2024-07-03T14:20:12,938 copying build/lib/galaxy/tool_util/toolbox/views/interface.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/toolbox/views 2024-07-03T14:20:12,941 copying build/lib/galaxy/tool_util/toolbox/views/definitions.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/toolbox/views 2024-07-03T14:20:12,943 copying build/lib/galaxy/tool_util/toolbox/views/sources.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/toolbox/views 2024-07-03T14:20:12,945 copying build/lib/galaxy/tool_util/toolbox/views/edam.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/toolbox/views 2024-07-03T14:20:12,948 copying build/lib/galaxy/tool_util/toolbox/views/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/toolbox/views 2024-07-03T14:20:12,949 copying build/lib/galaxy/tool_util/toolbox/views/static.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/toolbox/views 2024-07-03T14:20:12,952 copying build/lib/galaxy/tool_util/toolbox/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/toolbox 2024-07-03T14:20:12,954 copying build/lib/galaxy/tool_util/toolbox/watcher.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/toolbox 2024-07-03T14:20:12,957 creating build/bdist.linux-armv7l/wheel/galaxy/tool_util/locations 2024-07-03T14:20:12,959 copying build/lib/galaxy/tool_util/locations/dockstore.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/locations 2024-07-03T14:20:12,961 copying build/lib/galaxy/tool_util/locations/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/locations 2024-07-03T14:20:12,963 copying build/lib/galaxy/tool_util/locations/http.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/locations 2024-07-03T14:20:12,965 copying build/lib/galaxy/tool_util/locations/file.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/locations 2024-07-03T14:20:12,967 copying build/lib/galaxy/tool_util/fetcher.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util 2024-07-03T14:20:12,970 creating build/bdist.linux-armv7l/wheel/galaxy/tool_util/xsd 2024-07-03T14:20:12,971 copying build/lib/galaxy/tool_util/xsd/README.md -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/xsd 2024-07-03T14:20:12,974 copying build/lib/galaxy/tool_util/xsd/LICENSE -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/xsd 2024-07-03T14:20:12,976 copying build/lib/galaxy/tool_util/xsd/galaxy.jxb -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/xsd 2024-07-03T14:20:12,979 copying build/lib/galaxy/tool_util/xsd/galaxy.xsd -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/xsd 2024-07-03T14:20:12,992 copying build/lib/galaxy/tool_util/loader_directory.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util 2024-07-03T14:20:12,996 copying build/lib/galaxy/tool_util/version.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util 2024-07-03T14:20:12,999 copying build/lib/galaxy/tool_util/output_checker.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util 2024-07-03T14:20:13,003 creating build/bdist.linux-armv7l/wheel/galaxy/tool_util/linters 2024-07-03T14:20:13,005 copying build/lib/galaxy/tool_util/linters/general.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/linters 2024-07-03T14:20:13,009 copying build/lib/galaxy/tool_util/linters/help.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/linters 2024-07-03T14:20:13,012 copying build/lib/galaxy/tool_util/linters/cwl.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/linters 2024-07-03T14:20:13,015 copying build/lib/galaxy/tool_util/linters/output.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/linters 2024-07-03T14:20:13,018 copying build/lib/galaxy/tool_util/linters/command.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/linters 2024-07-03T14:20:13,021 copying build/lib/galaxy/tool_util/linters/xml_order.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/linters 2024-07-03T14:20:13,024 copying build/lib/galaxy/tool_util/linters/inputs.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/linters 2024-07-03T14:20:13,029 copying build/lib/galaxy/tool_util/linters/stdio.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/linters 2024-07-03T14:20:13,032 copying build/lib/galaxy/tool_util/linters/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/linters 2024-07-03T14:20:13,035 copying build/lib/galaxy/tool_util/linters/_util.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/linters 2024-07-03T14:20:13,037 copying build/lib/galaxy/tool_util/linters/xsd.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/linters 2024-07-03T14:20:13,040 copying build/lib/galaxy/tool_util/linters/citations.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/linters 2024-07-03T14:20:13,045 copying build/lib/galaxy/tool_util/linters/tests.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/linters 2024-07-03T14:20:13,050 creating build/bdist.linux-armv7l/wheel/galaxy/tool_util/deps 2024-07-03T14:20:13,051 copying build/lib/galaxy/tool_util/deps/brew_util.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/deps 2024-07-03T14:20:13,054 copying build/lib/galaxy/tool_util/deps/conda_compat.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/deps 2024-07-03T14:20:13,056 copying build/lib/galaxy/tool_util/deps/conda_util.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/deps 2024-07-03T14:20:13,060 copying build/lib/galaxy/tool_util/deps/singularity_util.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/deps 2024-07-03T14:20:13,063 copying build/lib/galaxy/tool_util/deps/containers.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/deps 2024-07-03T14:20:13,066 copying build/lib/galaxy/tool_util/deps/installable.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/deps 2024-07-03T14:20:13,068 copying build/lib/galaxy/tool_util/deps/dockerfiles.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/deps 2024-07-03T14:20:13,070 copying build/lib/galaxy/tool_util/deps/views.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/deps 2024-07-03T14:20:13,073 copying build/lib/galaxy/tool_util/deps/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/deps 2024-07-03T14:20:13,075 copying build/lib/galaxy/tool_util/deps/brew_exts.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/deps 2024-07-03T14:20:13,078 creating build/bdist.linux-armv7l/wheel/galaxy/tool_util/deps/resolvers 2024-07-03T14:20:13,079 copying build/lib/galaxy/tool_util/deps/resolvers/homebrew.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/deps/resolvers 2024-07-03T14:20:13,081 copying build/lib/galaxy/tool_util/deps/resolvers/modules.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/deps/resolvers 2024-07-03T14:20:13,083 copying build/lib/galaxy/tool_util/deps/resolvers/conda.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/deps/resolvers 2024-07-03T14:20:13,086 copying build/lib/galaxy/tool_util/deps/resolvers/default_conda_mapping.yml -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/deps/resolvers 2024-07-03T14:20:13,088 copying build/lib/galaxy/tool_util/deps/resolvers/brewed_tool_shed_packages.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/deps/resolvers 2024-07-03T14:20:13,090 copying build/lib/galaxy/tool_util/deps/resolvers/tool_shed_packages.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/deps/resolvers 2024-07-03T14:20:13,092 copying build/lib/galaxy/tool_util/deps/resolvers/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/deps/resolvers 2024-07-03T14:20:13,094 copying build/lib/galaxy/tool_util/deps/resolvers/galaxy_packages.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/deps/resolvers 2024-07-03T14:20:13,096 copying build/lib/galaxy/tool_util/deps/resolvers/lmod.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/deps/resolvers 2024-07-03T14:20:13,098 copying build/lib/galaxy/tool_util/deps/resolvers/resolver_mixins.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/deps/resolvers 2024-07-03T14:20:13,100 copying build/lib/galaxy/tool_util/deps/resolvers/unlinked_tool_shed_packages.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/deps/resolvers 2024-07-03T14:20:13,102 copying build/lib/galaxy/tool_util/deps/container_volumes.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/deps 2024-07-03T14:20:13,104 creating build/bdist.linux-armv7l/wheel/galaxy/tool_util/deps/container_resolvers 2024-07-03T14:20:13,106 copying build/lib/galaxy/tool_util/deps/container_resolvers/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/deps/container_resolvers 2024-07-03T14:20:13,108 copying build/lib/galaxy/tool_util/deps/container_resolvers/mulled.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/deps/container_resolvers 2024-07-03T14:20:13,110 copying build/lib/galaxy/tool_util/deps/container_resolvers/test.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/deps/container_resolvers 2024-07-03T14:20:13,112 copying build/lib/galaxy/tool_util/deps/container_resolvers/explicit.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/deps/container_resolvers 2024-07-03T14:20:13,114 copying build/lib/galaxy/tool_util/deps/dependencies.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/deps 2024-07-03T14:20:13,116 copying build/lib/galaxy/tool_util/deps/container_classes.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/deps 2024-07-03T14:20:13,119 creating build/bdist.linux-armv7l/wheel/galaxy/tool_util/deps/mulled 2024-07-03T14:20:13,120 copying build/lib/galaxy/tool_util/deps/mulled/util.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/deps/mulled 2024-07-03T14:20:13,123 copying build/lib/galaxy/tool_util/deps/mulled/invfile.lua -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/deps/mulled 2024-07-03T14:20:13,125 copying build/lib/galaxy/tool_util/deps/mulled/mulled_build.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/deps/mulled 2024-07-03T14:20:13,128 copying build/lib/galaxy/tool_util/deps/mulled/_cli.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/deps/mulled 2024-07-03T14:20:13,130 copying build/lib/galaxy/tool_util/deps/mulled/mulled_search.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/deps/mulled 2024-07-03T14:20:13,132 copying build/lib/galaxy/tool_util/deps/mulled/get_tests.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/deps/mulled 2024-07-03T14:20:13,135 copying build/lib/galaxy/tool_util/deps/mulled/mulled_build_files.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/deps/mulled 2024-07-03T14:20:13,136 copying build/lib/galaxy/tool_util/deps/mulled/mulled_hash.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/deps/mulled 2024-07-03T14:20:13,138 copying build/lib/galaxy/tool_util/deps/mulled/mulled_update_singularity_containers.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/deps/mulled 2024-07-03T14:20:13,140 copying build/lib/galaxy/tool_util/deps/mulled/mulled_build_channel.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/deps/mulled 2024-07-03T14:20:13,142 copying build/lib/galaxy/tool_util/deps/mulled/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/deps/mulled 2024-07-03T14:20:13,143 copying build/lib/galaxy/tool_util/deps/mulled/mulled_build_tool.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/deps/mulled 2024-07-03T14:20:13,145 copying build/lib/galaxy/tool_util/deps/mulled/mulled_list.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/deps/mulled 2024-07-03T14:20:13,147 copying build/lib/galaxy/tool_util/deps/requirements.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/deps 2024-07-03T14:20:13,150 copying build/lib/galaxy/tool_util/deps/docker_util.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/deps 2024-07-03T14:20:13,152 copying build/lib/galaxy/tool_util/deps/commands.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/deps 2024-07-03T14:20:13,154 creating build/bdist.linux-armv7l/wheel/galaxy/tool_util/client 2024-07-03T14:20:13,155 copying build/lib/galaxy/tool_util/client/staging.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/client 2024-07-03T14:20:13,158 copying build/lib/galaxy/tool_util/client/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/client 2024-07-03T14:20:13,159 copying build/lib/galaxy/tool_util/loader.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util 2024-07-03T14:20:13,161 copying build/lib/galaxy/tool_util/provided_metadata.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util 2024-07-03T14:20:13,163 copying build/lib/galaxy/tool_util/edam_util.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util 2024-07-03T14:20:13,165 copying build/lib/galaxy/tool_util/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util 2024-07-03T14:20:13,167 creating build/bdist.linux-armv7l/wheel/galaxy/tool_util/unittest_utils 2024-07-03T14:20:13,168 copying build/lib/galaxy/tool_util/unittest_utils/interactor.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/unittest_utils 2024-07-03T14:20:13,170 copying build/lib/galaxy/tool_util/unittest_utils/sample_data.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/unittest_utils 2024-07-03T14:20:13,172 copying build/lib/galaxy/tool_util/unittest_utils/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/unittest_utils 2024-07-03T14:20:13,174 creating build/bdist.linux-armv7l/wheel/galaxy/tool_util/ontologies 2024-07-03T14:20:13,175 copying build/lib/galaxy/tool_util/ontologies/ontology_data.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/ontologies 2024-07-03T14:20:13,177 copying build/lib/galaxy/tool_util/ontologies/edam_topic_mappings.tsv -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/ontologies 2024-07-03T14:20:13,179 copying build/lib/galaxy/tool_util/ontologies/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/ontologies 2024-07-03T14:20:13,180 copying build/lib/galaxy/tool_util/ontologies/biotools_mappings.tsv -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/ontologies 2024-07-03T14:20:13,183 copying build/lib/galaxy/tool_util/ontologies/edam_operation_mappings.tsv -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/ontologies 2024-07-03T14:20:13,185 creating build/bdist.linux-armv7l/wheel/galaxy/tool_util/verify 2024-07-03T14:20:13,186 copying build/lib/galaxy/tool_util/verify/interactor.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/verify 2024-07-03T14:20:13,191 creating build/bdist.linux-armv7l/wheel/galaxy/tool_util/verify/asserts 2024-07-03T14:20:13,192 copying build/lib/galaxy/tool_util/verify/asserts/image.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/verify/asserts 2024-07-03T14:20:13,194 copying build/lib/galaxy/tool_util/verify/asserts/xml.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/verify/asserts 2024-07-03T14:20:13,197 copying build/lib/galaxy/tool_util/verify/asserts/size.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/verify/asserts 2024-07-03T14:20:13,198 copying build/lib/galaxy/tool_util/verify/asserts/tabular.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/verify/asserts 2024-07-03T14:20:13,200 copying build/lib/galaxy/tool_util/verify/asserts/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/verify/asserts 2024-07-03T14:20:13,202 copying build/lib/galaxy/tool_util/verify/asserts/text.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/verify/asserts 2024-07-03T14:20:13,204 copying build/lib/galaxy/tool_util/verify/asserts/json.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/verify/asserts 2024-07-03T14:20:13,206 copying build/lib/galaxy/tool_util/verify/asserts/_util.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/verify/asserts 2024-07-03T14:20:13,208 copying build/lib/galaxy/tool_util/verify/asserts/hdf5.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/verify/asserts 2024-07-03T14:20:13,209 copying build/lib/galaxy/tool_util/verify/asserts/archive.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/verify/asserts 2024-07-03T14:20:13,211 copying build/lib/galaxy/tool_util/verify/wait.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/verify 2024-07-03T14:20:13,213 copying build/lib/galaxy/tool_util/verify/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/verify 2024-07-03T14:20:13,216 copying build/lib/galaxy/tool_util/verify/test_data.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/verify 2024-07-03T14:20:13,218 copying build/lib/galaxy/tool_util/verify/script.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/verify 2024-07-03T14:20:13,221 copying build/lib/galaxy/tool_util/verify/test_config.sample.yml -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/verify 2024-07-03T14:20:13,223 creating build/bdist.linux-armv7l/wheel/galaxy/tool_util/biotools 2024-07-03T14:20:13,224 copying build/lib/galaxy/tool_util/biotools/interface.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/biotools 2024-07-03T14:20:13,227 copying build/lib/galaxy/tool_util/biotools/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/biotools 2024-07-03T14:20:13,229 copying build/lib/galaxy/tool_util/biotools/source.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/biotools 2024-07-03T14:20:13,231 creating build/bdist.linux-armv7l/wheel/galaxy/tool_util/parser 2024-07-03T14:20:13,232 copying build/lib/galaxy/tool_util/parser/util.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/parser 2024-07-03T14:20:13,235 copying build/lib/galaxy/tool_util/parser/interface.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/parser 2024-07-03T14:20:13,237 copying build/lib/galaxy/tool_util/parser/factory.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/parser 2024-07-03T14:20:13,240 copying build/lib/galaxy/tool_util/parser/xml.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/parser 2024-07-03T14:20:13,244 copying build/lib/galaxy/tool_util/parser/cwl.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/parser 2024-07-03T14:20:13,246 copying build/lib/galaxy/tool_util/parser/output_collection_def.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/parser 2024-07-03T14:20:13,248 copying build/lib/galaxy/tool_util/parser/stdio.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/parser 2024-07-03T14:20:13,251 copying build/lib/galaxy/tool_util/parser/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/parser 2024-07-03T14:20:13,253 copying build/lib/galaxy/tool_util/parser/output_objects.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/parser 2024-07-03T14:20:13,255 copying build/lib/galaxy/tool_util/parser/yaml.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/parser 2024-07-03T14:20:13,258 copying build/lib/galaxy/tool_util/parser/output_actions.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/parser 2024-07-03T14:20:13,261 creating build/bdist.linux-armv7l/wheel/galaxy/tool_util/cwl 2024-07-03T14:20:13,263 copying build/lib/galaxy/tool_util/cwl/util.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/cwl 2024-07-03T14:20:13,266 copying build/lib/galaxy/tool_util/cwl/runnable.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/cwl 2024-07-03T14:20:13,268 copying build/lib/galaxy/tool_util/cwl/runtime_actions.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/cwl 2024-07-03T14:20:13,270 copying build/lib/galaxy/tool_util/cwl/cwltool_deps.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/cwl 2024-07-03T14:20:13,272 copying build/lib/galaxy/tool_util/cwl/representation.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/cwl 2024-07-03T14:20:13,275 copying build/lib/galaxy/tool_util/cwl/parser.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/cwl 2024-07-03T14:20:13,279 copying build/lib/galaxy/tool_util/cwl/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/cwl 2024-07-03T14:20:13,281 copying build/lib/galaxy/tool_util/cwl/schema.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/cwl 2024-07-03T14:20:13,283 copying build/lib/galaxy/tool_util/lint.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util 2024-07-03T14:20:13,286 creating build/bdist.linux-armv7l/wheel/galaxy/tool_util/data 2024-07-03T14:20:13,287 creating build/bdist.linux-armv7l/wheel/galaxy/tool_util/data/bundles 2024-07-03T14:20:13,289 copying build/lib/galaxy/tool_util/data/bundles/models.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/data/bundles 2024-07-03T14:20:13,291 copying build/lib/galaxy/tool_util/data/bundles/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/data/bundles 2024-07-03T14:20:13,293 copying build/lib/galaxy/tool_util/data/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/data 2024-07-03T14:20:13,297 copying build/lib/galaxy/tool_util/data/_schema.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/data 2024-07-03T14:20:13,299 running install_egg_info 2024-07-03T14:20:13,312 Copying galaxy_tool_util.egg-info to build/bdist.linux-armv7l/wheel/galaxy_tool_util-24.1.1-py3.11.egg-info 2024-07-03T14:20:13,324 running install_scripts 2024-07-03T14:20:13,347 creating build/bdist.linux-armv7l/wheel/galaxy_tool_util-24.1.1.dist-info/WHEEL 2024-07-03T14:20:13,349 creating '/tmp/pip-wheel-u7ii7_vg/.tmp-fy784rex/galaxy_tool_util-24.1.1-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2024-07-03T14:20:13,352 adding 'galaxy/__init__.py' 2024-07-03T14:20:13,353 adding 'galaxy/py.typed' 2024-07-03T14:20:13,356 adding 'galaxy/tool_util/__init__.py' 2024-07-03T14:20:13,357 adding 'galaxy/tool_util/edam_util.py' 2024-07-03T14:20:13,359 adding 'galaxy/tool_util/fetcher.py' 2024-07-03T14:20:13,362 adding 'galaxy/tool_util/lint.py' 2024-07-03T14:20:13,364 adding 'galaxy/tool_util/loader.py' 2024-07-03T14:20:13,366 adding 'galaxy/tool_util/loader_directory.py' 2024-07-03T14:20:13,368 adding 'galaxy/tool_util/output_checker.py' 2024-07-03T14:20:13,370 adding 'galaxy/tool_util/provided_metadata.py' 2024-07-03T14:20:13,372 adding 'galaxy/tool_util/version.py' 2024-07-03T14:20:13,374 adding 'galaxy/tool_util/biotools/__init__.py' 2024-07-03T14:20:13,376 adding 'galaxy/tool_util/biotools/interface.py' 2024-07-03T14:20:13,377 adding 'galaxy/tool_util/biotools/source.py' 2024-07-03T14:20:13,379 adding 'galaxy/tool_util/client/__init__.py' 2024-07-03T14:20:13,382 adding 'galaxy/tool_util/client/staging.py' 2024-07-03T14:20:13,384 adding 'galaxy/tool_util/cwl/__init__.py' 2024-07-03T14:20:13,386 adding 'galaxy/tool_util/cwl/cwltool_deps.py' 2024-07-03T14:20:13,392 adding 'galaxy/tool_util/cwl/parser.py' 2024-07-03T14:20:13,395 adding 'galaxy/tool_util/cwl/representation.py' 2024-07-03T14:20:13,397 adding 'galaxy/tool_util/cwl/runnable.py' 2024-07-03T14:20:13,399 adding 'galaxy/tool_util/cwl/runtime_actions.py' 2024-07-03T14:20:13,401 adding 'galaxy/tool_util/cwl/schema.py' 2024-07-03T14:20:13,404 adding 'galaxy/tool_util/cwl/util.py' 2024-07-03T14:20:13,412 adding 'galaxy/tool_util/data/__init__.py' 2024-07-03T14:20:13,414 adding 'galaxy/tool_util/data/_schema.py' 2024-07-03T14:20:13,416 adding 'galaxy/tool_util/data/bundles/__init__.py' 2024-07-03T14:20:13,418 adding 'galaxy/tool_util/data/bundles/models.py' 2024-07-03T14:20:13,421 adding 'galaxy/tool_util/deps/__init__.py' 2024-07-03T14:20:13,424 adding 'galaxy/tool_util/deps/brew_exts.py' 2024-07-03T14:20:13,425 adding 'galaxy/tool_util/deps/brew_util.py' 2024-07-03T14:20:13,427 adding 'galaxy/tool_util/deps/commands.py' 2024-07-03T14:20:13,428 adding 'galaxy/tool_util/deps/conda_compat.py' 2024-07-03T14:20:13,431 adding 'galaxy/tool_util/deps/conda_util.py' 2024-07-03T14:20:13,434 adding 'galaxy/tool_util/deps/container_classes.py' 2024-07-03T14:20:13,436 adding 'galaxy/tool_util/deps/container_volumes.py' 2024-07-03T14:20:13,438 adding 'galaxy/tool_util/deps/containers.py' 2024-07-03T14:20:13,440 adding 'galaxy/tool_util/deps/dependencies.py' 2024-07-03T14:20:13,441 adding 'galaxy/tool_util/deps/docker_util.py' 2024-07-03T14:20:13,443 adding 'galaxy/tool_util/deps/dockerfiles.py' 2024-07-03T14:20:13,444 adding 'galaxy/tool_util/deps/installable.py' 2024-07-03T14:20:13,446 adding 'galaxy/tool_util/deps/requirements.py' 2024-07-03T14:20:13,447 adding 'galaxy/tool_util/deps/singularity_util.py' 2024-07-03T14:20:13,450 adding 'galaxy/tool_util/deps/views.py' 2024-07-03T14:20:13,452 adding 'galaxy/tool_util/deps/container_resolvers/__init__.py' 2024-07-03T14:20:13,454 adding 'galaxy/tool_util/deps/container_resolvers/explicit.py' 2024-07-03T14:20:13,457 adding 'galaxy/tool_util/deps/container_resolvers/mulled.py' 2024-07-03T14:20:13,458 adding 'galaxy/tool_util/deps/container_resolvers/test.py' 2024-07-03T14:20:13,460 adding 'galaxy/tool_util/deps/mulled/__init__.py' 2024-07-03T14:20:13,461 adding 'galaxy/tool_util/deps/mulled/_cli.py' 2024-07-03T14:20:13,463 adding 'galaxy/tool_util/deps/mulled/get_tests.py' 2024-07-03T14:20:13,465 adding 'galaxy/tool_util/deps/mulled/invfile.lua' 2024-07-03T14:20:13,468 adding 'galaxy/tool_util/deps/mulled/mulled_build.py' 2024-07-03T14:20:13,470 adding 'galaxy/tool_util/deps/mulled/mulled_build_channel.py' 2024-07-03T14:20:13,471 adding 'galaxy/tool_util/deps/mulled/mulled_build_files.py' 2024-07-03T14:20:13,473 adding 'galaxy/tool_util/deps/mulled/mulled_build_tool.py' 2024-07-03T14:20:13,474 adding 'galaxy/tool_util/deps/mulled/mulled_hash.py' 2024-07-03T14:20:13,476 adding 'galaxy/tool_util/deps/mulled/mulled_list.py' 2024-07-03T14:20:13,478 adding 'galaxy/tool_util/deps/mulled/mulled_search.py' 2024-07-03T14:20:13,480 adding 'galaxy/tool_util/deps/mulled/mulled_update_singularity_containers.py' 2024-07-03T14:20:13,483 adding 'galaxy/tool_util/deps/mulled/util.py' 2024-07-03T14:20:13,486 adding 'galaxy/tool_util/deps/resolvers/__init__.py' 2024-07-03T14:20:13,487 adding 'galaxy/tool_util/deps/resolvers/brewed_tool_shed_packages.py' 2024-07-03T14:20:13,490 adding 'galaxy/tool_util/deps/resolvers/conda.py' 2024-07-03T14:20:13,491 adding 'galaxy/tool_util/deps/resolvers/default_conda_mapping.yml' 2024-07-03T14:20:13,492 adding 'galaxy/tool_util/deps/resolvers/galaxy_packages.py' 2024-07-03T14:20:13,493 adding 'galaxy/tool_util/deps/resolvers/homebrew.py' 2024-07-03T14:20:13,496 adding 'galaxy/tool_util/deps/resolvers/lmod.py' 2024-07-03T14:20:13,497 adding 'galaxy/tool_util/deps/resolvers/modules.py' 2024-07-03T14:20:13,499 adding 'galaxy/tool_util/deps/resolvers/resolver_mixins.py' 2024-07-03T14:20:13,500 adding 'galaxy/tool_util/deps/resolvers/tool_shed_packages.py' 2024-07-03T14:20:13,501 adding 'galaxy/tool_util/deps/resolvers/unlinked_tool_shed_packages.py' 2024-07-03T14:20:13,503 adding 'galaxy/tool_util/linters/__init__.py' 2024-07-03T14:20:13,504 adding 'galaxy/tool_util/linters/_util.py' 2024-07-03T14:20:13,506 adding 'galaxy/tool_util/linters/citations.py' 2024-07-03T14:20:13,507 adding 'galaxy/tool_util/linters/command.py' 2024-07-03T14:20:13,508 adding 'galaxy/tool_util/linters/cwl.py' 2024-07-03T14:20:13,510 adding 'galaxy/tool_util/linters/general.py' 2024-07-03T14:20:13,511 adding 'galaxy/tool_util/linters/help.py' 2024-07-03T14:20:13,515 adding 'galaxy/tool_util/linters/inputs.py' 2024-07-03T14:20:13,517 adding 'galaxy/tool_util/linters/output.py' 2024-07-03T14:20:13,518 adding 'galaxy/tool_util/linters/stdio.py' 2024-07-03T14:20:13,521 adding 'galaxy/tool_util/linters/tests.py' 2024-07-03T14:20:13,522 adding 'galaxy/tool_util/linters/xml_order.py' 2024-07-03T14:20:13,523 adding 'galaxy/tool_util/linters/xsd.py' 2024-07-03T14:20:13,525 adding 'galaxy/tool_util/locations/__init__.py' 2024-07-03T14:20:13,526 adding 'galaxy/tool_util/locations/dockstore.py' 2024-07-03T14:20:13,527 adding 'galaxy/tool_util/locations/file.py' 2024-07-03T14:20:13,529 adding 'galaxy/tool_util/locations/http.py' 2024-07-03T14:20:13,530 adding 'galaxy/tool_util/ontologies/__init__.py' 2024-07-03T14:20:13,536 adding 'galaxy/tool_util/ontologies/biotools_mappings.tsv' 2024-07-03T14:20:13,537 adding 'galaxy/tool_util/ontologies/edam_operation_mappings.tsv' 2024-07-03T14:20:13,538 adding 'galaxy/tool_util/ontologies/edam_topic_mappings.tsv' 2024-07-03T14:20:13,540 adding 'galaxy/tool_util/ontologies/ontology_data.py' 2024-07-03T14:20:13,541 adding 'galaxy/tool_util/parser/__init__.py' 2024-07-03T14:20:13,543 adding 'galaxy/tool_util/parser/cwl.py' 2024-07-03T14:20:13,544 adding 'galaxy/tool_util/parser/factory.py' 2024-07-03T14:20:13,547 adding 'galaxy/tool_util/parser/interface.py' 2024-07-03T14:20:13,550 adding 'galaxy/tool_util/parser/output_actions.py' 2024-07-03T14:20:13,551 adding 'galaxy/tool_util/parser/output_collection_def.py' 2024-07-03T14:20:13,553 adding 'galaxy/tool_util/parser/output_objects.py' 2024-07-03T14:20:13,555 adding 'galaxy/tool_util/parser/stdio.py' 2024-07-03T14:20:13,556 adding 'galaxy/tool_util/parser/util.py' 2024-07-03T14:20:13,563 adding 'galaxy/tool_util/parser/xml.py' 2024-07-03T14:20:13,565 adding 'galaxy/tool_util/parser/yaml.py' 2024-07-03T14:20:13,567 adding 'galaxy/tool_util/toolbox/__init__.py' 2024-07-03T14:20:13,575 adding 'galaxy/tool_util/toolbox/base.py' 2024-07-03T14:20:13,577 adding 'galaxy/tool_util/toolbox/integrated_panel.py' 2024-07-03T14:20:13,579 adding 'galaxy/tool_util/toolbox/panel.py' 2024-07-03T14:20:13,580 adding 'galaxy/tool_util/toolbox/parser.py' 2024-07-03T14:20:13,582 adding 'galaxy/tool_util/toolbox/watcher.py' 2024-07-03T14:20:13,584 adding 'galaxy/tool_util/toolbox/filters/__init__.py' 2024-07-03T14:20:13,585 adding 'galaxy/tool_util/toolbox/filters/examples.py.sample' 2024-07-03T14:20:13,587 adding 'galaxy/tool_util/toolbox/lineages/__init__.py' 2024-07-03T14:20:13,588 adding 'galaxy/tool_util/toolbox/lineages/factory.py' 2024-07-03T14:20:13,590 adding 'galaxy/tool_util/toolbox/lineages/interface.py' 2024-07-03T14:20:13,591 adding 'galaxy/tool_util/toolbox/views/__init__.py' 2024-07-03T14:20:13,593 adding 'galaxy/tool_util/toolbox/views/definitions.py' 2024-07-03T14:20:13,594 adding 'galaxy/tool_util/toolbox/views/edam.py' 2024-07-03T14:20:13,595 adding 'galaxy/tool_util/toolbox/views/interface.py' 2024-07-03T14:20:13,596 adding 'galaxy/tool_util/toolbox/views/sources.py' 2024-07-03T14:20:13,598 adding 'galaxy/tool_util/toolbox/views/static.py' 2024-07-03T14:20:13,600 adding 'galaxy/tool_util/unittest_utils/__init__.py' 2024-07-03T14:20:13,601 adding 'galaxy/tool_util/unittest_utils/interactor.py' 2024-07-03T14:20:13,602 adding 'galaxy/tool_util/unittest_utils/sample_data.py' 2024-07-03T14:20:13,606 adding 'galaxy/tool_util/verify/__init__.py' 2024-07-03T14:20:13,615 adding 'galaxy/tool_util/verify/interactor.py' 2024-07-03T14:20:13,618 adding 'galaxy/tool_util/verify/script.py' 2024-07-03T14:20:13,620 adding 'galaxy/tool_util/verify/test_config.sample.yml' 2024-07-03T14:20:13,621 adding 'galaxy/tool_util/verify/test_data.py' 2024-07-03T14:20:13,623 adding 'galaxy/tool_util/verify/wait.py' 2024-07-03T14:20:13,625 adding 'galaxy/tool_util/verify/asserts/__init__.py' 2024-07-03T14:20:13,626 adding 'galaxy/tool_util/verify/asserts/_util.py' 2024-07-03T14:20:13,628 adding 'galaxy/tool_util/verify/asserts/archive.py' 2024-07-03T14:20:13,629 adding 'galaxy/tool_util/verify/asserts/hdf5.py' 2024-07-03T14:20:13,631 adding 'galaxy/tool_util/verify/asserts/image.py' 2024-07-03T14:20:13,632 adding 'galaxy/tool_util/verify/asserts/json.py' 2024-07-03T14:20:13,634 adding 'galaxy/tool_util/verify/asserts/size.py' 2024-07-03T14:20:13,638 adding 'galaxy/tool_util/verify/asserts/tabular.py' 2024-07-03T14:20:13,639 adding 'galaxy/tool_util/verify/asserts/text.py' 2024-07-03T14:20:13,641 adding 'galaxy/tool_util/verify/asserts/xml.py' 2024-07-03T14:20:13,643 adding 'galaxy/tool_util/xsd/LICENSE' 2024-07-03T14:20:13,644 adding 'galaxy/tool_util/xsd/README.md' 2024-07-03T14:20:13,646 adding 'galaxy/tool_util/xsd/galaxy.jxb' 2024-07-03T14:20:13,684 adding 'galaxy/tool_util/xsd/galaxy.xsd' 2024-07-03T14:20:13,690 adding 'galaxy_tool_util-24.1.1.dist-info/LICENSE' 2024-07-03T14:20:13,693 adding 'galaxy_tool_util-24.1.1.dist-info/METADATA' 2024-07-03T14:20:13,694 adding 'galaxy_tool_util-24.1.1.dist-info/WHEEL' 2024-07-03T14:20:13,695 adding 'galaxy_tool_util-24.1.1.dist-info/entry_points.txt' 2024-07-03T14:20:13,696 adding 'galaxy_tool_util-24.1.1.dist-info/top_level.txt' 2024-07-03T14:20:13,699 adding 'galaxy_tool_util-24.1.1.dist-info/RECORD' 2024-07-03T14:20:13,707 removing build/bdist.linux-armv7l/wheel 2024-07-03T14:20:13,853 Building wheel for galaxy-tool-util (pyproject.toml): finished with status 'done' 2024-07-03T14:20:13,872 Created wheel for galaxy-tool-util: filename=galaxy_tool_util-24.1.1-py3-none-any.whl size=424343 sha256=0b196fedfdd0976e81cf7c9f04af6b251eb3bfa4278c0887b1f4445b673f94ee 2024-07-03T14:20:13,874 Stored in directory: /tmp/pip-ephem-wheel-cache-2lccdmbg/wheels/7c/4b/09/cfc9c6adb7193d2f41e127132f470aed9249175746bfce356b 2024-07-03T14:20:13,894 Successfully built galaxy-tool-util 2024-07-03T14:20:13,914 Removed build tracker: '/tmp/pip-build-tracker-0lpy762e'