2024-07-03T14:20:16,863 Created temporary directory: /tmp/pip-build-tracker-sbfuhoxh 2024-07-03T14:20:16,864 Initialized build tracking at /tmp/pip-build-tracker-sbfuhoxh 2024-07-03T14:20:16,865 Created build tracker: /tmp/pip-build-tracker-sbfuhoxh 2024-07-03T14:20:16,865 Entered build tracker: /tmp/pip-build-tracker-sbfuhoxh 2024-07-03T14:20:16,866 Created temporary directory: /tmp/pip-wheel-i1pjljn2 2024-07-03T14:20:16,869 Created temporary directory: /tmp/pip-ephem-wheel-cache-gv9vce7_ 2024-07-03T14:20:16,891 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2024-07-03T14:20:16,895 2 location(s) to search for versions of galaxy-data: 2024-07-03T14:20:16,895 * https://pypi.org/simple/galaxy-data/ 2024-07-03T14:20:16,895 * https://www.piwheels.org/simple/galaxy-data/ 2024-07-03T14:20:16,895 Fetching project page and analyzing links: https://pypi.org/simple/galaxy-data/ 2024-07-03T14:20:16,896 Getting page https://pypi.org/simple/galaxy-data/ 2024-07-03T14:20:16,898 Found index url https://pypi.org/simple/ 2024-07-03T14:20:17,113 Fetched page https://pypi.org/simple/galaxy-data/ as application/vnd.pypi.simple.v1+json 2024-07-03T14:20:17,123 Found link https://files.pythonhosted.org/packages/1f/fa/d8f43cf473dabba250bd9d5fed96b1a5acc89517739bc26b91489f61fa57/galaxy-data-19.9.0.dev0.tar.gz (from https://pypi.org/simple/galaxy-data/), version: 19.9.0.dev0 2024-07-03T14:20:17,124 Skipping link: No binaries permitted for galaxy-data: https://files.pythonhosted.org/packages/42/ed/b96a4bff7db2009e0aaf27fa1b4e85c7dc2d247792888f0ba985a77da73c/galaxy_data-19.9.0.dev0-py2-none-any.whl (from https://pypi.org/simple/galaxy-data/) 2024-07-03T14:20:17,124 Found link https://files.pythonhosted.org/packages/6e/e3/475e99a40432070b9490ccf497bcfb330899422c99301b23609eb73a04c2/galaxy-data-19.9.0.dev1.tar.gz (from https://pypi.org/simple/galaxy-data/), version: 19.9.0.dev1 2024-07-03T14:20:17,125 Skipping link: No binaries permitted for 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2024-07-03T14:20:17,333 Skipping link: No binaries permitted for galaxy-data: https://www.piwheels.org/simple/galaxy-data/galaxy_data-24.0.2-py3-none-any.whl#sha256=e466415e183c7e45bd21234182a3d6ed3898fd8180e3007bfd80faf652b3f12e (from https://www.piwheels.org/simple/galaxy-data/) (requires-python:>=3.8) 2024-07-03T14:20:17,333 Skipping link: No binaries permitted for galaxy-data: https://www.piwheels.org/simple/galaxy-data/galaxy_data-24.0.1-py3-none-any.whl#sha256=cd83dafcfefab65dbf1131c26d01501412529977a843917fb93dcf29ca6d6b50 (from https://www.piwheels.org/simple/galaxy-data/) (requires-python:>=3.8) 2024-07-03T14:20:17,334 Skipping link: No binaries permitted for galaxy-data: https://www.piwheels.org/simple/galaxy-data/galaxy_data-24.0.0-py3-none-any.whl#sha256=328de8406bd4ad881caf69cf3c2cd87921b769f91850e5dbc638e644a9f758ea (from https://www.piwheels.org/simple/galaxy-data/) (requires-python:>=3.8) 2024-07-03T14:20:17,335 Skipping link: No binaries permitted for galaxy-data: 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https://www.piwheels.org/simple/galaxy-data/galaxy_data-23.1.2-py3-none-any.whl#sha256=6bc2bf81f9d19cc7f8c36895d91310bb81c9665bd6734da2d822c97268795271 (from https://www.piwheels.org/simple/galaxy-data/) (requires-python:>=3.7) 2024-07-03T14:20:17,337 Skipping link: No binaries permitted for galaxy-data: https://www.piwheels.org/simple/galaxy-data/galaxy_data-23.1.1-py3-none-any.whl#sha256=f427d6cda528220b4f2e49bd96c760316c0ce7a163426b85318cd7e839ee2f36 (from https://www.piwheels.org/simple/galaxy-data/) (requires-python:>=3.7) 2024-07-03T14:20:17,337 Skipping link: No binaries permitted for galaxy-data: https://www.piwheels.org/simple/galaxy-data/galaxy_data-23.1.dev0-py3-none-any.whl#sha256=d8bdc54c892782be56993b9430444e6e975e9a3c16a39ece618774bfb75789d8 (from https://www.piwheels.org/simple/galaxy-data/) (requires-python:>=3.7) 2024-07-03T14:20:17,338 Skipping link: No binaries permitted for galaxy-data: https://www.piwheels.org/simple/galaxy-data/galaxy_data-23.0.6-py3-none-any.whl#sha256=1e5ed6cae0510e76e323813199175a56f1b4f2cb3ed9ed3fb1ac8428f8f30be5 (from https://www.piwheels.org/simple/galaxy-data/) (requires-python:>=3.7) 2024-07-03T14:20:17,338 Skipping link: No binaries permitted for galaxy-data: https://www.piwheels.org/simple/galaxy-data/galaxy_data-23.0.5-py3-none-any.whl#sha256=5d7a907df2f9960fc2ecec8662179e56cdcba1fb16b8566835cf8ef787f30475 (from https://www.piwheels.org/simple/galaxy-data/) (requires-python:>=3.7) 2024-07-03T14:20:17,339 Skipping link: No binaries permitted for galaxy-data: https://www.piwheels.org/simple/galaxy-data/galaxy_data-23.0.4-py3-none-any.whl#sha256=3d5ad2502fa48e10c71a6fcdb795b447622b4e1123eaf7cd1f35fda65247e6e0 (from https://www.piwheels.org/simple/galaxy-data/) (requires-python:>=3.7) 2024-07-03T14:20:17,339 Skipping link: No binaries permitted for galaxy-data: 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https://www.piwheels.org/simple/galaxy-data/galaxy_data-22.1.1-py2.py3-none-any.whl#sha256=ecc837f08336d9e32b26184803927f5386aec84e8d67d2a30e198498bb951b19 (from https://www.piwheels.org/simple/galaxy-data/) 2024-07-03T14:20:17,341 Skipping link: No binaries permitted for galaxy-data: https://www.piwheels.org/simple/galaxy-data/galaxy_data-21.9.0-py2.py3-none-any.whl#sha256=7bd7fa30190a424a66c62f96012c6dd667990fc8ae39dcb1e4ddc6811e6c9a4d (from https://www.piwheels.org/simple/galaxy-data/) 2024-07-03T14:20:17,343 Skipping link: No binaries permitted for galaxy-data: https://www.piwheels.org/simple/galaxy-data/galaxy_data-20.9.1-py2.py3-none-any.whl#sha256=6a456ec927643665dae5c649a6a18460d79474bd5e1277274ea2174e952f94c2 (from https://www.piwheels.org/simple/galaxy-data/) 2024-07-03T14:20:17,343 Skipping link: No binaries permitted for galaxy-data: 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https://www.piwheels.org/simple/galaxy-data/galaxy_data-19.9.0.dev2-py2.py3-none-any.whl#sha256=be58e78b806fa3f85a8a8d45b7f040439a0c95d461003172d2b7b4430002d33f (from https://www.piwheels.org/simple/galaxy-data/) 2024-07-03T14:20:17,345 Skipping link: No binaries permitted for galaxy-data: https://www.piwheels.org/simple/galaxy-data/galaxy_data-19.9.0.dev1-py2.py3-none-any.whl#sha256=ef242b3d745ced066c572d137b43095eb7df42074a5e1e8eca76ea52cf065a92 (from https://www.piwheels.org/simple/galaxy-data/) 2024-07-03T14:20:17,345 Skipping link: No binaries permitted for galaxy-data: https://www.piwheels.org/simple/galaxy-data/galaxy_data-19.9.0.dev0-py3-none-any.whl#sha256=d4831c48a07316758b909a471cb006e270083f3ceccc3d174f78b44b07a914ff (from https://www.piwheels.org/simple/galaxy-data/) 2024-07-03T14:20:17,346 Skipping link: not a file: https://www.piwheels.org/simple/galaxy-data/ 2024-07-03T14:20:17,346 Skipping link: not a file: https://pypi.org/simple/galaxy-data/ 2024-07-03T14:20:17,369 Given no hashes to check 1 links for project 'galaxy-data': discarding no candidates 2024-07-03T14:20:17,388 Collecting galaxy-data==24.1.1 2024-07-03T14:20:17,391 Created temporary directory: /tmp/pip-unpack-smyjuf63 2024-07-03T14:20:17,608 Downloading galaxy_data-24.1.1.tar.gz (557 kB) 2024-07-03T14:20:18,339 Added galaxy-data==24.1.1 from https://files.pythonhosted.org/packages/00/d9/1b326dba32acbdf5027df256b409c7dd68c387685e83ea311cca812ba44e/galaxy_data-24.1.1.tar.gz to build tracker '/tmp/pip-build-tracker-sbfuhoxh' 2024-07-03T14:20:18,341 Created temporary directory: /tmp/pip-build-env-51fn1skd 2024-07-03T14:20:18,346 Installing build dependencies: started 2024-07-03T14:20:18,347 Running command pip subprocess to install build dependencies 2024-07-03T14:20:19,484 Using pip 24.0 from /usr/local/lib/python3.11/dist-packages/pip (python 3.11) 2024-07-03T14:20:19,985 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2024-07-03T14:20:21,467 Collecting setuptools 2024-07-03T14:20:21,482 Using cached https://www.piwheels.org/simple/setuptools/setuptools-70.2.0-py3-none-any.whl (930 kB) 2024-07-03T14:20:24,156 Installing collected packages: setuptools 2024-07-03T14:20:26,689 Successfully installed setuptools-70.2.0 2024-07-03T14:20:26,997 [notice] A new release of pip is available: 24.0 -> 24.1.1 2024-07-03T14:20:26,998 [notice] To update, run: python3 -m pip install --upgrade pip 2024-07-03T14:20:27,265 Installing build dependencies: finished with status 'done' 2024-07-03T14:20:27,268 Getting requirements to build wheel: started 2024-07-03T14:20:27,269 Running command Getting requirements to build wheel 2024-07-03T14:20:27,932 running egg_info 2024-07-03T14:20:27,936 writing galaxy_data.egg-info/PKG-INFO 2024-07-03T14:20:27,942 writing dependency_links to galaxy_data.egg-info/dependency_links.txt 2024-07-03T14:20:27,944 writing entry points to galaxy_data.egg-info/entry_points.txt 2024-07-03T14:20:27,946 writing requirements to galaxy_data.egg-info/requires.txt 2024-07-03T14:20:27,947 writing top-level names to galaxy_data.egg-info/top_level.txt 2024-07-03T14:20:27,987 reading manifest file 'galaxy_data.egg-info/SOURCES.txt' 2024-07-03T14:20:28,005 reading manifest template 'MANIFEST.in' 2024-07-03T14:20:28,032 adding license file 'LICENSE' 2024-07-03T14:20:28,047 writing manifest file 'galaxy_data.egg-info/SOURCES.txt' 2024-07-03T14:20:28,136 Getting requirements to build wheel: finished with status 'done' 2024-07-03T14:20:28,139 Created temporary directory: /tmp/pip-modern-metadata-6ph2rr3t 2024-07-03T14:20:28,141 Preparing metadata (pyproject.toml): started 2024-07-03T14:20:28,143 Running command Preparing metadata (pyproject.toml) 2024-07-03T14:20:28,724 running dist_info 2024-07-03T14:20:28,729 creating /tmp/pip-modern-metadata-6ph2rr3t/galaxy_data.egg-info 2024-07-03T14:20:28,732 writing /tmp/pip-modern-metadata-6ph2rr3t/galaxy_data.egg-info/PKG-INFO 2024-07-03T14:20:28,738 writing dependency_links to /tmp/pip-modern-metadata-6ph2rr3t/galaxy_data.egg-info/dependency_links.txt 2024-07-03T14:20:28,740 writing entry points to /tmp/pip-modern-metadata-6ph2rr3t/galaxy_data.egg-info/entry_points.txt 2024-07-03T14:20:28,741 writing requirements to /tmp/pip-modern-metadata-6ph2rr3t/galaxy_data.egg-info/requires.txt 2024-07-03T14:20:28,742 writing top-level names to /tmp/pip-modern-metadata-6ph2rr3t/galaxy_data.egg-info/top_level.txt 2024-07-03T14:20:28,744 writing manifest file '/tmp/pip-modern-metadata-6ph2rr3t/galaxy_data.egg-info/SOURCES.txt' 2024-07-03T14:20:28,779 reading manifest file '/tmp/pip-modern-metadata-6ph2rr3t/galaxy_data.egg-info/SOURCES.txt' 2024-07-03T14:20:28,781 reading manifest template 'MANIFEST.in' 2024-07-03T14:20:28,803 adding license file 'LICENSE' 2024-07-03T14:20:28,814 writing manifest file '/tmp/pip-modern-metadata-6ph2rr3t/galaxy_data.egg-info/SOURCES.txt' 2024-07-03T14:20:28,816 creating '/tmp/pip-modern-metadata-6ph2rr3t/galaxy_data-24.1.1.dist-info' 2024-07-03T14:20:28,957 Preparing metadata (pyproject.toml): finished with status 'done' 2024-07-03T14:20:28,965 Source in /tmp/pip-wheel-i1pjljn2/galaxy-data_391be3a1923e4069b59f798f9ea91cd6 has version 24.1.1, which satisfies requirement galaxy-data==24.1.1 from https://files.pythonhosted.org/packages/00/d9/1b326dba32acbdf5027df256b409c7dd68c387685e83ea311cca812ba44e/galaxy_data-24.1.1.tar.gz 2024-07-03T14:20:28,965 Removed galaxy-data==24.1.1 from https://files.pythonhosted.org/packages/00/d9/1b326dba32acbdf5027df256b409c7dd68c387685e83ea311cca812ba44e/galaxy_data-24.1.1.tar.gz from build tracker '/tmp/pip-build-tracker-sbfuhoxh' 2024-07-03T14:20:28,976 Created temporary directory: /tmp/pip-unpack-tbbyf1u2 2024-07-03T14:20:28,977 Created temporary directory: /tmp/pip-unpack-a281em20 2024-07-03T14:20:29,014 Building wheels for collected packages: galaxy-data 2024-07-03T14:20:29,019 Created temporary directory: /tmp/pip-wheel-8x239_m4 2024-07-03T14:20:29,019 Destination directory: /tmp/pip-wheel-8x239_m4 2024-07-03T14:20:29,021 Building wheel for galaxy-data (pyproject.toml): started 2024-07-03T14:20:29,022 Running command Building wheel for galaxy-data (pyproject.toml) 2024-07-03T14:20:29,594 running bdist_wheel 2024-07-03T14:20:29,632 running build 2024-07-03T14:20:29,633 running build_py 2024-07-03T14:20:29,640 creating build 2024-07-03T14:20:29,640 creating build/lib 2024-07-03T14:20:29,641 creating build/lib/galaxy 2024-07-03T14:20:29,642 copying galaxy/__init__.py -> build/lib/galaxy 2024-07-03T14:20:29,645 creating build/lib/galaxy/model 2024-07-03T14:20:29,646 copying galaxy/model/database_object_names.py -> build/lib/galaxy/model 2024-07-03T14:20:29,648 copying galaxy/model/database_heartbeat.py -> build/lib/galaxy/model 2024-07-03T14:20:29,650 copying galaxy/model/item_attrs.py -> build/lib/galaxy/model 2024-07-03T14:20:29,652 copying galaxy/model/base.py -> build/lib/galaxy/model 2024-07-03T14:20:29,654 copying galaxy/model/index_filter_util.py -> build/lib/galaxy/model 2024-07-03T14:20:29,655 copying galaxy/model/metadata.py -> build/lib/galaxy/model 2024-07-03T14:20:29,658 copying galaxy/model/custom_types.py -> build/lib/galaxy/model 2024-07-03T14:20:29,660 copying galaxy/model/__init__.py -> build/lib/galaxy/model 2024-07-03T14:20:29,669 copying galaxy/model/none_like.py -> build/lib/galaxy/model 2024-07-03T14:20:29,671 copying galaxy/model/mapping.py -> build/lib/galaxy/model 2024-07-03T14:20:29,673 copying galaxy/model/security.py -> build/lib/galaxy/model 2024-07-03T14:20:29,676 copying galaxy/model/database_utils.py -> build/lib/galaxy/model 2024-07-03T14:20:29,678 copying galaxy/model/deferred.py -> build/lib/galaxy/model 2024-07-03T14:20:29,681 copying galaxy/model/tags.py -> build/lib/galaxy/model 2024-07-03T14:20:29,684 copying galaxy/model/scoped_session.py -> build/lib/galaxy/model 2024-07-03T14:20:29,688 creating build/lib/galaxy/datatypes 2024-07-03T14:20:29,689 copying galaxy/datatypes/data.py -> build/lib/galaxy/datatypes 2024-07-03T14:20:29,692 copying galaxy/datatypes/xml.py -> build/lib/galaxy/datatypes 2024-07-03T14:20:29,695 copying galaxy/datatypes/speech.py -> build/lib/galaxy/datatypes 2024-07-03T14:20:29,697 copying galaxy/datatypes/annotation.py -> build/lib/galaxy/datatypes 2024-07-03T14:20:29,699 copying galaxy/datatypes/assembly.py -> build/lib/galaxy/datatypes 2024-07-03T14:20:29,701 copying galaxy/datatypes/spaln.py -> build/lib/galaxy/datatypes 2024-07-03T14:20:29,704 copying galaxy/datatypes/media.py -> build/lib/galaxy/datatypes 2024-07-03T14:20:29,706 copying galaxy/datatypes/larch.py -> build/lib/galaxy/datatypes 2024-07-03T14:20:29,709 copying galaxy/datatypes/ngsindex.py -> build/lib/galaxy/datatypes 2024-07-03T14:20:29,711 copying galaxy/datatypes/chain.py -> build/lib/galaxy/datatypes 2024-07-03T14:20:29,713 copying galaxy/datatypes/protocols.py -> build/lib/galaxy/datatypes 2024-07-03T14:20:29,715 copying galaxy/datatypes/metacyto.py -> build/lib/galaxy/datatypes 2024-07-03T14:20:29,717 copying galaxy/datatypes/graph.py -> build/lib/galaxy/datatypes 2024-07-03T14:20:29,719 copying galaxy/datatypes/tabular.py -> build/lib/galaxy/datatypes 2024-07-03T14:20:29,723 copying galaxy/datatypes/isa.py -> build/lib/galaxy/datatypes 2024-07-03T14:20:29,726 copying galaxy/datatypes/metadata.py -> build/lib/galaxy/datatypes 2024-07-03T14:20:29,728 copying galaxy/datatypes/anvio.py -> build/lib/galaxy/datatypes 2024-07-03T14:20:29,730 copying galaxy/datatypes/sequence.py -> build/lib/galaxy/datatypes 2024-07-03T14:20:29,734 copying galaxy/datatypes/qualityscore.py -> build/lib/galaxy/datatypes 2024-07-03T14:20:29,736 copying galaxy/datatypes/goldenpath.py -> build/lib/galaxy/datatypes 2024-07-03T14:20:29,739 copying galaxy/datatypes/neo4j.py -> build/lib/galaxy/datatypes 2024-07-03T14:20:29,741 copying galaxy/datatypes/proteomics.py -> build/lib/galaxy/datatypes 2024-07-03T14:20:29,744 copying galaxy/datatypes/upload_util.py -> build/lib/galaxy/datatypes 2024-07-03T14:20:29,747 copying galaxy/datatypes/flow.py -> build/lib/galaxy/datatypes 2024-07-03T14:20:29,748 copying galaxy/datatypes/gis.py -> build/lib/galaxy/datatypes 2024-07-03T14:20:29,750 copying galaxy/datatypes/__init__.py -> build/lib/galaxy/datatypes 2024-07-03T14:20:29,752 copying galaxy/datatypes/triples.py -> build/lib/galaxy/datatypes 2024-07-03T14:20:29,754 copying galaxy/datatypes/plant_tribes.py -> build/lib/galaxy/datatypes 2024-07-03T14:20:29,756 copying galaxy/datatypes/blast.py -> build/lib/galaxy/datatypes 2024-07-03T14:20:29,759 copying galaxy/datatypes/binary.py -> build/lib/galaxy/datatypes 2024-07-03T14:20:29,764 copying galaxy/datatypes/text.py -> build/lib/galaxy/datatypes 2024-07-03T14:20:29,767 copying galaxy/datatypes/registry.py -> build/lib/galaxy/datatypes 2024-07-03T14:20:29,771 copying galaxy/datatypes/phylip.py -> build/lib/galaxy/datatypes 2024-07-03T14:20:29,773 copying galaxy/datatypes/coverage.py -> build/lib/galaxy/datatypes 2024-07-03T14:20:29,775 copying galaxy/datatypes/msa.py -> build/lib/galaxy/datatypes 2024-07-03T14:20:29,777 copying galaxy/datatypes/hdf5.py -> build/lib/galaxy/datatypes 2024-07-03T14:20:29,779 copying galaxy/datatypes/tracks.py -> build/lib/galaxy/datatypes 2024-07-03T14:20:29,781 copying galaxy/datatypes/_schema.py -> build/lib/galaxy/datatypes 2024-07-03T14:20:29,784 copying galaxy/datatypes/sniff.py -> build/lib/galaxy/datatypes 2024-07-03T14:20:29,787 copying galaxy/datatypes/images.py -> build/lib/galaxy/datatypes 2024-07-03T14:20:29,789 copying galaxy/datatypes/mothur.py -> build/lib/galaxy/datatypes 2024-07-03T14:20:29,791 copying galaxy/datatypes/chrominfo.py -> build/lib/galaxy/datatypes 2024-07-03T14:20:29,793 copying galaxy/datatypes/interval.py -> build/lib/galaxy/datatypes 2024-07-03T14:20:29,796 copying galaxy/datatypes/genetics.py -> build/lib/galaxy/datatypes 2024-07-03T14:20:29,799 copying galaxy/datatypes/checkers.py -> build/lib/galaxy/datatypes 2024-07-03T14:20:29,801 copying galaxy/datatypes/microarrays.py -> build/lib/galaxy/datatypes 2024-07-03T14:20:29,803 copying galaxy/datatypes/molecules.py -> build/lib/galaxy/datatypes 2024-07-03T14:20:29,806 copying galaxy/datatypes/qiime2.py -> build/lib/galaxy/datatypes 2024-07-03T14:20:29,808 copying galaxy/datatypes/constructive_solid_geometry.py -> build/lib/galaxy/datatypes 2024-07-03T14:20:29,812 creating build/lib/galaxy/quota 2024-07-03T14:20:29,812 copying galaxy/quota/__init__.py -> build/lib/galaxy/quota 2024-07-03T14:20:29,815 copying galaxy/quota/_schema.py -> build/lib/galaxy/quota 2024-07-03T14:20:29,818 creating build/lib/galaxy/security 2024-07-03T14:20:29,819 copying galaxy/security/validate_user_input.py -> build/lib/galaxy/security 2024-07-03T14:20:29,821 copying galaxy/security/idencoding.py -> build/lib/galaxy/security 2024-07-03T14:20:29,823 copying galaxy/security/vault.py -> build/lib/galaxy/security 2024-07-03T14:20:29,825 copying galaxy/security/ssh_util.py -> build/lib/galaxy/security 2024-07-03T14:20:29,827 copying galaxy/security/__init__.py -> build/lib/galaxy/security 2024-07-03T14:20:29,829 copying galaxy/security/passwords.py -> build/lib/galaxy/security 2024-07-03T14:20:29,830 copying galaxy/security/object_wrapper.py -> build/lib/galaxy/security 2024-07-03T14:20:29,833 creating build/lib/galaxy/model/store 2024-07-03T14:20:29,834 copying galaxy/model/store/load_objects.py -> build/lib/galaxy/model/store 2024-07-03T14:20:29,836 copying galaxy/model/store/_bco_convert_utils.py -> build/lib/galaxy/model/store 2024-07-03T14:20:29,838 copying galaxy/model/store/discover.py -> build/lib/galaxy/model/store 2024-07-03T14:20:29,841 copying galaxy/model/store/build_objects.py -> build/lib/galaxy/model/store 2024-07-03T14:20:29,843 copying galaxy/model/store/__init__.py -> build/lib/galaxy/model/store 2024-07-03T14:20:29,847 copying galaxy/model/store/ro_crate_utils.py -> build/lib/galaxy/model/store 2024-07-03T14:20:29,850 creating build/lib/galaxy/model/migrations 2024-07-03T14:20:29,851 copying galaxy/model/migrations/util.py -> build/lib/galaxy/model/migrations 2024-07-03T14:20:29,854 copying galaxy/model/migrations/exceptions.py -> build/lib/galaxy/model/migrations 2024-07-03T14:20:29,856 copying galaxy/model/migrations/scripts.py -> build/lib/galaxy/model/migrations 2024-07-03T14:20:29,858 copying galaxy/model/migrations/base.py -> build/lib/galaxy/model/migrations 2024-07-03T14:20:29,860 copying galaxy/model/migrations/__init__.py -> build/lib/galaxy/model/migrations 2024-07-03T14:20:29,862 copying galaxy/model/migrations/dbscript.py -> build/lib/galaxy/model/migrations 2024-07-03T14:20:29,865 creating build/lib/galaxy/model/tool_shed_install 2024-07-03T14:20:29,865 copying galaxy/model/tool_shed_install/__init__.py -> build/lib/galaxy/model/tool_shed_install 2024-07-03T14:20:29,868 copying galaxy/model/tool_shed_install/mapping.py -> build/lib/galaxy/model/tool_shed_install 2024-07-03T14:20:29,870 creating build/lib/galaxy/model/scripts 2024-07-03T14:20:29,871 copying galaxy/model/scripts/__init__.py -> build/lib/galaxy/model/scripts 2024-07-03T14:20:29,872 copying galaxy/model/scripts/prune_history_table.py -> build/lib/galaxy/model/scripts 2024-07-03T14:20:29,874 copying galaxy/model/scripts/history_table_pruner.py -> build/lib/galaxy/model/scripts 2024-07-03T14:20:29,876 creating build/lib/galaxy/model/unittest_utils 2024-07-03T14:20:29,877 copying galaxy/model/unittest_utils/model_testing_utils.py -> build/lib/galaxy/model/unittest_utils 2024-07-03T14:20:29,879 copying galaxy/model/unittest_utils/beaker_testing_utils.py -> build/lib/galaxy/model/unittest_utils 2024-07-03T14:20:29,881 copying galaxy/model/unittest_utils/store_fixtures.py -> build/lib/galaxy/model/unittest_utils 2024-07-03T14:20:29,883 copying galaxy/model/unittest_utils/migration_scripts_testing_utils.py -> build/lib/galaxy/model/unittest_utils 2024-07-03T14:20:29,885 copying galaxy/model/unittest_utils/__init__.py -> build/lib/galaxy/model/unittest_utils 2024-07-03T14:20:29,886 copying galaxy/model/unittest_utils/data_app.py -> build/lib/galaxy/model/unittest_utils 2024-07-03T14:20:29,889 creating build/lib/galaxy/model/orm 2024-07-03T14:20:29,889 copying galaxy/model/orm/util.py -> build/lib/galaxy/model/orm 2024-07-03T14:20:29,891 copying galaxy/model/orm/scripts.py -> build/lib/galaxy/model/orm 2024-07-03T14:20:29,893 copying galaxy/model/orm/__init__.py -> build/lib/galaxy/model/orm 2024-07-03T14:20:29,895 copying galaxy/model/orm/engine_factory.py -> build/lib/galaxy/model/orm 2024-07-03T14:20:29,897 copying galaxy/model/orm/now.py -> build/lib/galaxy/model/orm 2024-07-03T14:20:29,899 creating build/lib/galaxy/model/dataset_collections 2024-07-03T14:20:29,900 copying galaxy/model/dataset_collections/type_description.py -> build/lib/galaxy/model/dataset_collections 2024-07-03T14:20:29,902 copying galaxy/model/dataset_collections/structure.py -> build/lib/galaxy/model/dataset_collections 2024-07-03T14:20:29,904 copying galaxy/model/dataset_collections/matching.py -> build/lib/galaxy/model/dataset_collections 2024-07-03T14:20:29,906 copying galaxy/model/dataset_collections/builder.py -> build/lib/galaxy/model/dataset_collections 2024-07-03T14:20:29,908 copying galaxy/model/dataset_collections/__init__.py -> build/lib/galaxy/model/dataset_collections 2024-07-03T14:20:29,910 copying galaxy/model/dataset_collections/registry.py -> build/lib/galaxy/model/dataset_collections 2024-07-03T14:20:29,911 copying galaxy/model/dataset_collections/subcollections.py -> build/lib/galaxy/model/dataset_collections 2024-07-03T14:20:29,913 creating build/lib/galaxy/model/triggers 2024-07-03T14:20:29,914 copying galaxy/model/triggers/update_audit_table.py -> build/lib/galaxy/model/triggers 2024-07-03T14:20:29,917 copying galaxy/model/triggers/utils.py -> build/lib/galaxy/model/triggers 2024-07-03T14:20:29,918 copying galaxy/model/triggers/__init__.py -> build/lib/galaxy/model/triggers 2024-07-03T14:20:29,920 copying galaxy/model/triggers/history_update_time_field.py -> build/lib/galaxy/model/triggers 2024-07-03T14:20:29,922 creating build/lib/galaxy/model/dataset_collections/types 2024-07-03T14:20:29,923 copying galaxy/model/dataset_collections/types/__init__.py -> build/lib/galaxy/model/dataset_collections/types 2024-07-03T14:20:29,925 copying galaxy/model/dataset_collections/types/list.py -> build/lib/galaxy/model/dataset_collections/types 2024-07-03T14:20:29,927 copying galaxy/model/dataset_collections/types/paired.py -> build/lib/galaxy/model/dataset_collections/types 2024-07-03T14:20:29,929 creating build/lib/galaxy/datatypes/dataproviders 2024-07-03T14:20:29,930 copying galaxy/datatypes/dataproviders/exceptions.py -> build/lib/galaxy/datatypes/dataproviders 2024-07-03T14:20:29,932 copying galaxy/datatypes/dataproviders/chunk.py -> build/lib/galaxy/datatypes/dataproviders 2024-07-03T14:20:29,934 copying galaxy/datatypes/dataproviders/external.py -> build/lib/galaxy/datatypes/dataproviders 2024-07-03T14:20:29,936 copying galaxy/datatypes/dataproviders/base.py -> build/lib/galaxy/datatypes/dataproviders 2024-07-03T14:20:29,938 copying galaxy/datatypes/dataproviders/decorators.py -> build/lib/galaxy/datatypes/dataproviders 2024-07-03T14:20:29,940 copying galaxy/datatypes/dataproviders/hierarchy.py -> build/lib/galaxy/datatypes/dataproviders 2024-07-03T14:20:29,942 copying galaxy/datatypes/dataproviders/__init__.py -> build/lib/galaxy/datatypes/dataproviders 2024-07-03T14:20:29,943 copying galaxy/datatypes/dataproviders/line.py -> build/lib/galaxy/datatypes/dataproviders 2024-07-03T14:20:29,945 copying galaxy/datatypes/dataproviders/column.py -> build/lib/galaxy/datatypes/dataproviders 2024-07-03T14:20:29,948 copying galaxy/datatypes/dataproviders/dataset.py -> build/lib/galaxy/datatypes/dataproviders 2024-07-03T14:20:29,951 creating build/lib/galaxy/datatypes/converters 2024-07-03T14:20:29,952 copying galaxy/datatypes/converters/fasta_to_len.py -> build/lib/galaxy/datatypes/converters 2024-07-03T14:20:29,954 copying galaxy/datatypes/converters/maf_to_fasta_converter.py -> build/lib/galaxy/datatypes/converters 2024-07-03T14:20:29,956 copying galaxy/datatypes/converters/bed_to_gff_converter.py -> build/lib/galaxy/datatypes/converters 2024-07-03T14:20:29,957 copying galaxy/datatypes/converters/gff_to_interval_index_converter.py -> build/lib/galaxy/datatypes/converters 2024-07-03T14:20:29,959 copying galaxy/datatypes/converters/fastq_to_fqtoc.py -> build/lib/galaxy/datatypes/converters 2024-07-03T14:20:29,961 copying galaxy/datatypes/converters/picard_interval_list_to_bed6_converter.py -> build/lib/galaxy/datatypes/converters 2024-07-03T14:20:29,962 copying galaxy/datatypes/converters/ref_to_seq_taxonomy_converter.py -> build/lib/galaxy/datatypes/converters 2024-07-03T14:20:29,964 copying galaxy/datatypes/converters/parquet_to_csv_converter.py -> build/lib/galaxy/datatypes/converters 2024-07-03T14:20:29,966 copying galaxy/datatypes/converters/pbed_ldreduced_converter.py -> build/lib/galaxy/datatypes/converters 2024-07-03T14:20:29,968 copying galaxy/datatypes/converters/fasta_to_tabular_converter.py -> build/lib/galaxy/datatypes/converters 2024-07-03T14:20:29,969 copying galaxy/datatypes/converters/lped_to_pbed_converter.py -> build/lib/galaxy/datatypes/converters 2024-07-03T14:20:29,971 copying galaxy/datatypes/converters/maf_to_interval_converter.py -> build/lib/galaxy/datatypes/converters 2024-07-03T14:20:29,973 copying galaxy/datatypes/converters/fastqsolexa_to_qual_converter.py -> build/lib/galaxy/datatypes/converters 2024-07-03T14:20:29,974 copying galaxy/datatypes/converters/interval_to_interval_index_converter.py -> build/lib/galaxy/datatypes/converters 2024-07-03T14:20:29,976 copying galaxy/datatypes/converters/__init__.py -> build/lib/galaxy/datatypes/converters 2024-07-03T14:20:29,977 copying galaxy/datatypes/converters/interval_to_fli.py -> build/lib/galaxy/datatypes/converters 2024-07-03T14:20:29,979 copying galaxy/datatypes/converters/interval_to_bedstrict_converter.py -> build/lib/galaxy/datatypes/converters 2024-07-03T14:20:29,981 copying galaxy/datatypes/converters/lped_to_fped_converter.py -> build/lib/galaxy/datatypes/converters 2024-07-03T14:20:29,983 copying galaxy/datatypes/converters/wiggle_to_simple_converter.py -> build/lib/galaxy/datatypes/converters 2024-07-03T14:20:29,985 copying galaxy/datatypes/converters/fastqsolexa_to_fasta_converter.py -> build/lib/galaxy/datatypes/converters 2024-07-03T14:20:29,987 copying galaxy/datatypes/converters/pbed_to_lped_converter.py -> build/lib/galaxy/datatypes/converters 2024-07-03T14:20:29,989 copying galaxy/datatypes/converters/interval_to_bed_converter.py -> build/lib/galaxy/datatypes/converters 2024-07-03T14:20:29,990 copying galaxy/datatypes/converters/pileup_to_interval_index_converter.py -> build/lib/galaxy/datatypes/converters 2024-07-03T14:20:29,992 copying galaxy/datatypes/converters/gff_to_bed_converter.py -> build/lib/galaxy/datatypes/converters 2024-07-03T14:20:29,993 copying galaxy/datatypes/converters/vcf_to_interval_index_converter.py -> build/lib/galaxy/datatypes/converters 2024-07-03T14:20:29,995 copying galaxy/datatypes/converters/tabular_csv.py -> build/lib/galaxy/datatypes/converters 2024-07-03T14:20:29,997 creating build/lib/galaxy/datatypes/display_applications 2024-07-03T14:20:29,998 copying galaxy/datatypes/display_applications/util.py -> build/lib/galaxy/datatypes/display_applications 2024-07-03T14:20:29,999 copying galaxy/datatypes/display_applications/__init__.py -> build/lib/galaxy/datatypes/display_applications 2024-07-03T14:20:30,001 copying galaxy/datatypes/display_applications/parameters.py -> build/lib/galaxy/datatypes/display_applications 2024-07-03T14:20:30,003 copying galaxy/datatypes/display_applications/application.py -> build/lib/galaxy/datatypes/display_applications 2024-07-03T14:20:30,006 creating build/lib/galaxy/datatypes/util 2024-07-03T14:20:30,007 copying galaxy/datatypes/util/gff_util.py -> build/lib/galaxy/datatypes/util 2024-07-03T14:20:30,009 copying galaxy/datatypes/util/generic_util.py -> build/lib/galaxy/datatypes/util 2024-07-03T14:20:30,010 copying galaxy/datatypes/util/__init__.py -> build/lib/galaxy/datatypes/util 2024-07-03T14:20:30,012 copying galaxy/datatypes/util/maf_utilities.py -> build/lib/galaxy/datatypes/util 2024-07-03T14:20:30,014 running egg_info 2024-07-03T14:20:30,017 writing galaxy_data.egg-info/PKG-INFO 2024-07-03T14:20:30,023 writing dependency_links to galaxy_data.egg-info/dependency_links.txt 2024-07-03T14:20:30,024 writing entry points to galaxy_data.egg-info/entry_points.txt 2024-07-03T14:20:30,026 writing requirements to galaxy_data.egg-info/requires.txt 2024-07-03T14:20:30,027 writing top-level names to galaxy_data.egg-info/top_level.txt 2024-07-03T14:20:30,051 reading manifest file 'galaxy_data.egg-info/SOURCES.txt' 2024-07-03T14:20:30,059 reading manifest template 'MANIFEST.in' 2024-07-03T14:20:30,080 adding license file 'LICENSE' 2024-07-03T14:20:30,095 writing manifest file 'galaxy_data.egg-info/SOURCES.txt' 2024-07-03T14:20:30,099 /tmp/pip-build-env-51fn1skd/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'galaxy.datatypes.display_applications.configs.biom' is absent from the `packages` configuration. 2024-07-03T14:20:30,100 !! 2024-07-03T14:20:30,101 ******************************************************************************** 2024-07-03T14:20:30,101 ############################ 2024-07-03T14:20:30,102 # Package would be ignored # 2024-07-03T14:20:30,103 ############################ 2024-07-03T14:20:30,103 Python recognizes 'galaxy.datatypes.display_applications.configs.biom' as an importable package[^1], 2024-07-03T14:20:30,104 but it is absent from setuptools' `packages` configuration. 2024-07-03T14:20:30,105 This leads to an ambiguous overall configuration. If you want to distribute this 2024-07-03T14:20:30,105 package, please make sure that 'galaxy.datatypes.display_applications.configs.biom' is explicitly added 2024-07-03T14:20:30,106 to the `packages` configuration field. 2024-07-03T14:20:30,107 Alternatively, you can also rely on setuptools' discovery methods 2024-07-03T14:20:30,107 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-07-03T14:20:30,108 instead of `find_packages(...)`/`find:`). 2024-07-03T14:20:30,109 You can read more about "package discovery" on setuptools documentation page: 2024-07-03T14:20:30,110 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-07-03T14:20:30,111 If you don't want 'galaxy.datatypes.display_applications.configs.biom' to be distributed and are 2024-07-03T14:20:30,112 already explicitly excluding 'galaxy.datatypes.display_applications.configs.biom' via 2024-07-03T14:20:30,112 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-07-03T14:20:30,112 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-07-03T14:20:30,113 combination with a more fine grained `package-data` configuration. 2024-07-03T14:20:30,114 You can read more about "package data files" on setuptools documentation page: 2024-07-03T14:20:30,114 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-07-03T14:20:30,116 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-07-03T14:20:30,116 even if it does not contain any `.py` files. 2024-07-03T14:20:30,117 On the other hand, currently there is no concept of package data 2024-07-03T14:20:30,117 directory, all directories are treated like packages. 2024-07-03T14:20:30,117 ******************************************************************************** 2024-07-03T14:20:30,119 !! 2024-07-03T14:20:30,119 check.warn(importable) 2024-07-03T14:20:30,119 /tmp/pip-build-env-51fn1skd/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'galaxy.datatypes.display_applications.configs.ensembl' is absent from the `packages` configuration. 2024-07-03T14:20:30,120 !! 2024-07-03T14:20:30,121 ******************************************************************************** 2024-07-03T14:20:30,121 ############################ 2024-07-03T14:20:30,122 # Package would be ignored # 2024-07-03T14:20:30,123 ############################ 2024-07-03T14:20:30,123 Python recognizes 'galaxy.datatypes.display_applications.configs.ensembl' as an importable package[^1], 2024-07-03T14:20:30,124 but it is absent from setuptools' `packages` configuration. 2024-07-03T14:20:30,125 This leads to an ambiguous overall configuration. If you want to distribute this 2024-07-03T14:20:30,126 package, please make sure that 'galaxy.datatypes.display_applications.configs.ensembl' is explicitly added 2024-07-03T14:20:30,126 to the `packages` configuration field. 2024-07-03T14:20:30,127 Alternatively, you can also rely on setuptools' discovery methods 2024-07-03T14:20:30,127 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-07-03T14:20:30,128 instead of `find_packages(...)`/`find:`). 2024-07-03T14:20:30,129 You can read more about "package discovery" on setuptools documentation page: 2024-07-03T14:20:30,130 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-07-03T14:20:30,131 If you don't want 'galaxy.datatypes.display_applications.configs.ensembl' to be distributed and are 2024-07-03T14:20:30,132 already explicitly excluding 'galaxy.datatypes.display_applications.configs.ensembl' via 2024-07-03T14:20:30,132 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-07-03T14:20:30,133 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-07-03T14:20:30,133 combination with a more fine grained `package-data` configuration. 2024-07-03T14:20:30,134 You can read more about "package data files" on setuptools documentation page: 2024-07-03T14:20:30,135 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-07-03T14:20:30,137 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-07-03T14:20:30,137 even if it does not contain any `.py` files. 2024-07-03T14:20:30,138 On the other hand, currently there is no concept of package data 2024-07-03T14:20:30,139 directory, all directories are treated like packages. 2024-07-03T14:20:30,139 ******************************************************************************** 2024-07-03T14:20:30,140 !! 2024-07-03T14:20:30,140 check.warn(importable) 2024-07-03T14:20:30,140 /tmp/pip-build-env-51fn1skd/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'galaxy.datatypes.display_applications.configs.gbrowse' is absent from the `packages` configuration. 2024-07-03T14:20:30,141 !! 2024-07-03T14:20:30,142 ******************************************************************************** 2024-07-03T14:20:30,142 ############################ 2024-07-03T14:20:30,142 # Package would be ignored # 2024-07-03T14:20:30,143 ############################ 2024-07-03T14:20:30,143 Python recognizes 'galaxy.datatypes.display_applications.configs.gbrowse' as an importable package[^1], 2024-07-03T14:20:30,144 but it is absent from setuptools' `packages` configuration. 2024-07-03T14:20:30,145 This leads to an ambiguous overall configuration. If you want to distribute this 2024-07-03T14:20:30,145 package, please make sure that 'galaxy.datatypes.display_applications.configs.gbrowse' is explicitly added 2024-07-03T14:20:30,146 to the `packages` configuration field. 2024-07-03T14:20:30,147 Alternatively, you can also rely on setuptools' discovery methods 2024-07-03T14:20:30,147 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-07-03T14:20:30,148 instead of `find_packages(...)`/`find:`). 2024-07-03T14:20:30,149 You can read more about "package discovery" on setuptools documentation page: 2024-07-03T14:20:30,150 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-07-03T14:20:30,151 If you don't want 'galaxy.datatypes.display_applications.configs.gbrowse' to be distributed and are 2024-07-03T14:20:30,151 already explicitly excluding 'galaxy.datatypes.display_applications.configs.gbrowse' via 2024-07-03T14:20:30,152 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-07-03T14:20:30,152 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-07-03T14:20:30,153 combination with a more fine grained `package-data` configuration. 2024-07-03T14:20:30,154 You can read more about "package data files" on setuptools documentation page: 2024-07-03T14:20:30,155 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-07-03T14:20:30,156 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-07-03T14:20:30,156 even if it does not contain any `.py` files. 2024-07-03T14:20:30,157 On the other hand, currently there is no concept of package data 2024-07-03T14:20:30,157 directory, all directories are treated like packages. 2024-07-03T14:20:30,158 ******************************************************************************** 2024-07-03T14:20:30,159 !! 2024-07-03T14:20:30,159 check.warn(importable) 2024-07-03T14:20:30,160 /tmp/pip-build-env-51fn1skd/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'galaxy.datatypes.display_applications.configs.icn3d' is absent from the `packages` configuration. 2024-07-03T14:20:30,160 !! 2024-07-03T14:20:30,162 ******************************************************************************** 2024-07-03T14:20:30,162 ############################ 2024-07-03T14:20:30,163 # Package would be ignored # 2024-07-03T14:20:30,163 ############################ 2024-07-03T14:20:30,164 Python recognizes 'galaxy.datatypes.display_applications.configs.icn3d' as an importable package[^1], 2024-07-03T14:20:30,164 but it is absent from setuptools' `packages` configuration. 2024-07-03T14:20:30,165 This leads to an ambiguous overall configuration. If you want to distribute this 2024-07-03T14:20:30,166 package, please make sure that 'galaxy.datatypes.display_applications.configs.icn3d' is explicitly added 2024-07-03T14:20:30,166 to the `packages` configuration field. 2024-07-03T14:20:30,167 Alternatively, you can also rely on setuptools' discovery methods 2024-07-03T14:20:30,167 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-07-03T14:20:30,168 instead of `find_packages(...)`/`find:`). 2024-07-03T14:20:30,168 You can read more about "package discovery" on setuptools documentation page: 2024-07-03T14:20:30,169 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-07-03T14:20:30,170 If you don't want 'galaxy.datatypes.display_applications.configs.icn3d' to be distributed and are 2024-07-03T14:20:30,170 already explicitly excluding 'galaxy.datatypes.display_applications.configs.icn3d' via 2024-07-03T14:20:30,171 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-07-03T14:20:30,171 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-07-03T14:20:30,172 combination with a more fine grained `package-data` configuration. 2024-07-03T14:20:30,172 You can read more about "package data files" on setuptools documentation page: 2024-07-03T14:20:30,173 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-07-03T14:20:30,175 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-07-03T14:20:30,175 even if it does not contain any `.py` files. 2024-07-03T14:20:30,175 On the other hand, currently there is no concept of package data 2024-07-03T14:20:30,176 directory, all directories are treated like packages. 2024-07-03T14:20:30,176 ******************************************************************************** 2024-07-03T14:20:30,177 !! 2024-07-03T14:20:30,178 check.warn(importable) 2024-07-03T14:20:30,178 /tmp/pip-build-env-51fn1skd/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'galaxy.datatypes.display_applications.configs.igb' is absent from the `packages` configuration. 2024-07-03T14:20:30,179 !! 2024-07-03T14:20:30,180 ******************************************************************************** 2024-07-03T14:20:30,180 ############################ 2024-07-03T14:20:30,181 # Package would be ignored # 2024-07-03T14:20:30,181 ############################ 2024-07-03T14:20:30,182 Python recognizes 'galaxy.datatypes.display_applications.configs.igb' as an importable package[^1], 2024-07-03T14:20:30,182 but it is absent from setuptools' `packages` configuration. 2024-07-03T14:20:30,183 This leads to an ambiguous overall configuration. If you want to distribute this 2024-07-03T14:20:30,184 package, please make sure that 'galaxy.datatypes.display_applications.configs.igb' is explicitly added 2024-07-03T14:20:30,184 to the `packages` configuration field. 2024-07-03T14:20:30,185 Alternatively, you can also rely on setuptools' discovery methods 2024-07-03T14:20:30,186 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-07-03T14:20:30,186 instead of `find_packages(...)`/`find:`). 2024-07-03T14:20:30,187 You can read more about "package discovery" on setuptools documentation page: 2024-07-03T14:20:30,188 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-07-03T14:20:30,190 If you don't want 'galaxy.datatypes.display_applications.configs.igb' to be distributed and are 2024-07-03T14:20:30,190 already explicitly excluding 'galaxy.datatypes.display_applications.configs.igb' via 2024-07-03T14:20:30,191 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-07-03T14:20:30,191 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-07-03T14:20:30,192 combination with a more fine grained `package-data` configuration. 2024-07-03T14:20:30,193 You can read more about "package data files" on setuptools documentation page: 2024-07-03T14:20:30,194 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-07-03T14:20:30,195 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-07-03T14:20:30,195 even if it does not contain any `.py` files. 2024-07-03T14:20:30,196 On the other hand, currently there is no concept of package data 2024-07-03T14:20:30,196 directory, all directories are treated like packages. 2024-07-03T14:20:30,197 ******************************************************************************** 2024-07-03T14:20:30,198 !! 2024-07-03T14:20:30,198 check.warn(importable) 2024-07-03T14:20:30,199 /tmp/pip-build-env-51fn1skd/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'galaxy.datatypes.display_applications.configs.igv' is absent from the `packages` configuration. 2024-07-03T14:20:30,199 !! 2024-07-03T14:20:30,200 ******************************************************************************** 2024-07-03T14:20:30,200 ############################ 2024-07-03T14:20:30,201 # Package would be ignored # 2024-07-03T14:20:30,201 ############################ 2024-07-03T14:20:30,202 Python recognizes 'galaxy.datatypes.display_applications.configs.igv' as an importable package[^1], 2024-07-03T14:20:30,202 but it is absent from setuptools' `packages` configuration. 2024-07-03T14:20:30,203 This leads to an ambiguous overall configuration. If you want to distribute this 2024-07-03T14:20:30,204 package, please make sure that 'galaxy.datatypes.display_applications.configs.igv' is explicitly added 2024-07-03T14:20:30,204 to the `packages` configuration field. 2024-07-03T14:20:30,205 Alternatively, you can also rely on setuptools' discovery methods 2024-07-03T14:20:30,206 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-07-03T14:20:30,206 instead of `find_packages(...)`/`find:`). 2024-07-03T14:20:30,207 You can read more about "package discovery" on setuptools documentation page: 2024-07-03T14:20:30,208 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-07-03T14:20:30,209 If you don't want 'galaxy.datatypes.display_applications.configs.igv' to be distributed and are 2024-07-03T14:20:30,210 already explicitly excluding 'galaxy.datatypes.display_applications.configs.igv' via 2024-07-03T14:20:30,210 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-07-03T14:20:30,211 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-07-03T14:20:30,211 combination with a more fine grained `package-data` configuration. 2024-07-03T14:20:30,212 You can read more about "package data files" on setuptools documentation page: 2024-07-03T14:20:30,213 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-07-03T14:20:30,214 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-07-03T14:20:30,215 even if it does not contain any `.py` files. 2024-07-03T14:20:30,216 On the other hand, currently there is no concept of package data 2024-07-03T14:20:30,216 directory, all directories are treated like packages. 2024-07-03T14:20:30,217 ******************************************************************************** 2024-07-03T14:20:30,218 !! 2024-07-03T14:20:30,218 check.warn(importable) 2024-07-03T14:20:30,218 /tmp/pip-build-env-51fn1skd/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'galaxy.datatypes.display_applications.configs.image' is absent from the `packages` configuration. 2024-07-03T14:20:30,219 !! 2024-07-03T14:20:30,220 ******************************************************************************** 2024-07-03T14:20:30,220 ############################ 2024-07-03T14:20:30,221 # Package would be ignored # 2024-07-03T14:20:30,221 ############################ 2024-07-03T14:20:30,221 Python recognizes 'galaxy.datatypes.display_applications.configs.image' as an importable package[^1], 2024-07-03T14:20:30,222 but it is absent from setuptools' `packages` configuration. 2024-07-03T14:20:30,223 This leads to an ambiguous overall configuration. If you want to distribute this 2024-07-03T14:20:30,223 package, please make sure that 'galaxy.datatypes.display_applications.configs.image' is explicitly added 2024-07-03T14:20:30,224 to the `packages` configuration field. 2024-07-03T14:20:30,225 Alternatively, you can also rely on setuptools' discovery methods 2024-07-03T14:20:30,225 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-07-03T14:20:30,226 instead of `find_packages(...)`/`find:`). 2024-07-03T14:20:30,227 You can read more about "package discovery" on setuptools documentation page: 2024-07-03T14:20:30,227 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-07-03T14:20:30,228 If you don't want 'galaxy.datatypes.display_applications.configs.image' to be distributed and are 2024-07-03T14:20:30,229 already explicitly excluding 'galaxy.datatypes.display_applications.configs.image' via 2024-07-03T14:20:30,229 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-07-03T14:20:30,230 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-07-03T14:20:30,230 combination with a more fine grained `package-data` configuration. 2024-07-03T14:20:30,231 You can read more about "package data files" on setuptools documentation page: 2024-07-03T14:20:30,232 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-07-03T14:20:30,234 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-07-03T14:20:30,234 even if it does not contain any `.py` files. 2024-07-03T14:20:30,235 On the other hand, currently there is no concept of package data 2024-07-03T14:20:30,235 directory, all directories are treated like packages. 2024-07-03T14:20:30,236 ******************************************************************************** 2024-07-03T14:20:30,237 !! 2024-07-03T14:20:30,237 check.warn(importable) 2024-07-03T14:20:30,238 /tmp/pip-build-env-51fn1skd/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'galaxy.datatypes.display_applications.configs.intermine' is absent from the `packages` configuration. 2024-07-03T14:20:30,239 !! 2024-07-03T14:20:30,240 ******************************************************************************** 2024-07-03T14:20:30,240 ############################ 2024-07-03T14:20:30,241 # Package would be ignored # 2024-07-03T14:20:30,241 ############################ 2024-07-03T14:20:30,242 Python recognizes 'galaxy.datatypes.display_applications.configs.intermine' as an importable package[^1], 2024-07-03T14:20:30,242 but it is absent from setuptools' `packages` configuration. 2024-07-03T14:20:30,243 This leads to an ambiguous overall configuration. If you want to distribute this 2024-07-03T14:20:30,244 package, please make sure that 'galaxy.datatypes.display_applications.configs.intermine' is explicitly added 2024-07-03T14:20:30,245 to the `packages` configuration field. 2024-07-03T14:20:30,245 Alternatively, you can also rely on setuptools' discovery methods 2024-07-03T14:20:30,246 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-07-03T14:20:30,246 instead of `find_packages(...)`/`find:`). 2024-07-03T14:20:30,247 You can read more about "package discovery" on setuptools documentation page: 2024-07-03T14:20:30,248 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-07-03T14:20:30,248 If you don't want 'galaxy.datatypes.display_applications.configs.intermine' to be distributed and are 2024-07-03T14:20:30,249 already explicitly excluding 'galaxy.datatypes.display_applications.configs.intermine' via 2024-07-03T14:20:30,249 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-07-03T14:20:30,250 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-07-03T14:20:30,250 combination with a more fine grained `package-data` configuration. 2024-07-03T14:20:30,251 You can read more about "package data files" on setuptools documentation page: 2024-07-03T14:20:30,252 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-07-03T14:20:30,253 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-07-03T14:20:30,253 even if it does not contain any `.py` files. 2024-07-03T14:20:30,254 On the other hand, currently there is no concept of package data 2024-07-03T14:20:30,254 directory, all directories are treated like packages. 2024-07-03T14:20:30,255 ******************************************************************************** 2024-07-03T14:20:30,256 !! 2024-07-03T14:20:30,256 check.warn(importable) 2024-07-03T14:20:30,257 /tmp/pip-build-env-51fn1skd/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'galaxy.datatypes.display_applications.configs.iobio' is absent from the `packages` configuration. 2024-07-03T14:20:30,257 !! 2024-07-03T14:20:30,258 ******************************************************************************** 2024-07-03T14:20:30,259 ############################ 2024-07-03T14:20:30,259 # Package would be ignored # 2024-07-03T14:20:30,260 ############################ 2024-07-03T14:20:30,260 Python recognizes 'galaxy.datatypes.display_applications.configs.iobio' as an importable package[^1], 2024-07-03T14:20:30,260 but it is absent from setuptools' `packages` configuration. 2024-07-03T14:20:30,262 This leads to an ambiguous overall configuration. If you want to distribute this 2024-07-03T14:20:30,262 package, please make sure that 'galaxy.datatypes.display_applications.configs.iobio' is explicitly added 2024-07-03T14:20:30,263 to the `packages` configuration field. 2024-07-03T14:20:30,264 Alternatively, you can also rely on setuptools' discovery methods 2024-07-03T14:20:30,264 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-07-03T14:20:30,264 instead of `find_packages(...)`/`find:`). 2024-07-03T14:20:30,266 You can read more about "package discovery" on setuptools documentation page: 2024-07-03T14:20:30,267 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-07-03T14:20:30,268 If you don't want 'galaxy.datatypes.display_applications.configs.iobio' to be distributed and are 2024-07-03T14:20:30,268 already explicitly excluding 'galaxy.datatypes.display_applications.configs.iobio' via 2024-07-03T14:20:30,269 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-07-03T14:20:30,269 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-07-03T14:20:30,270 combination with a more fine grained `package-data` configuration. 2024-07-03T14:20:30,271 You can read more about "package data files" on setuptools documentation page: 2024-07-03T14:20:30,271 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-07-03T14:20:30,272 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-07-03T14:20:30,273 even if it does not contain any `.py` files. 2024-07-03T14:20:30,273 On the other hand, currently there is no concept of package data 2024-07-03T14:20:30,274 directory, all directories are treated like packages. 2024-07-03T14:20:30,274 ******************************************************************************** 2024-07-03T14:20:30,275 !! 2024-07-03T14:20:30,275 check.warn(importable) 2024-07-03T14:20:30,276 /tmp/pip-build-env-51fn1skd/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'galaxy.datatypes.display_applications.configs.minerva' is absent from the `packages` configuration. 2024-07-03T14:20:30,276 !! 2024-07-03T14:20:30,277 ******************************************************************************** 2024-07-03T14:20:30,277 ############################ 2024-07-03T14:20:30,278 # Package would be ignored # 2024-07-03T14:20:30,278 ############################ 2024-07-03T14:20:30,279 Python recognizes 'galaxy.datatypes.display_applications.configs.minerva' as an importable package[^1], 2024-07-03T14:20:30,279 but it is absent from setuptools' `packages` configuration. 2024-07-03T14:20:30,280 This leads to an ambiguous overall configuration. If you want to distribute this 2024-07-03T14:20:30,280 package, please make sure that 'galaxy.datatypes.display_applications.configs.minerva' is explicitly added 2024-07-03T14:20:30,281 to the `packages` configuration field. 2024-07-03T14:20:30,282 Alternatively, you can also rely on setuptools' discovery methods 2024-07-03T14:20:30,282 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-07-03T14:20:30,283 instead of `find_packages(...)`/`find:`). 2024-07-03T14:20:30,284 You can read more about "package discovery" on setuptools documentation page: 2024-07-03T14:20:30,285 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-07-03T14:20:30,286 If you don't want 'galaxy.datatypes.display_applications.configs.minerva' to be distributed and are 2024-07-03T14:20:30,287 already explicitly excluding 'galaxy.datatypes.display_applications.configs.minerva' via 2024-07-03T14:20:30,287 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-07-03T14:20:30,288 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-07-03T14:20:30,288 combination with a more fine grained `package-data` configuration. 2024-07-03T14:20:30,289 You can read more about "package data files" on setuptools documentation page: 2024-07-03T14:20:30,290 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-07-03T14:20:30,291 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-07-03T14:20:30,292 even if it does not contain any `.py` files. 2024-07-03T14:20:30,293 On the other hand, currently there is no concept of package data 2024-07-03T14:20:30,293 directory, all directories are treated like packages. 2024-07-03T14:20:30,293 ******************************************************************************** 2024-07-03T14:20:30,294 !! 2024-07-03T14:20:30,295 check.warn(importable) 2024-07-03T14:20:30,296 /tmp/pip-build-env-51fn1skd/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'galaxy.datatypes.display_applications.configs.qiime.qiime2' is absent from the `packages` configuration. 2024-07-03T14:20:30,296 !! 2024-07-03T14:20:30,297 ******************************************************************************** 2024-07-03T14:20:30,297 ############################ 2024-07-03T14:20:30,298 # Package would be ignored # 2024-07-03T14:20:30,298 ############################ 2024-07-03T14:20:30,299 Python recognizes 'galaxy.datatypes.display_applications.configs.qiime.qiime2' as an importable package[^1], 2024-07-03T14:20:30,299 but it is absent from setuptools' `packages` configuration. 2024-07-03T14:20:30,300 This leads to an ambiguous overall configuration. If you want to distribute this 2024-07-03T14:20:30,300 package, please make sure that 'galaxy.datatypes.display_applications.configs.qiime.qiime2' is explicitly added 2024-07-03T14:20:30,301 to the `packages` configuration field. 2024-07-03T14:20:30,301 Alternatively, you can also rely on setuptools' discovery methods 2024-07-03T14:20:30,302 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-07-03T14:20:30,303 instead of `find_packages(...)`/`find:`). 2024-07-03T14:20:30,304 You can read more about "package discovery" on setuptools documentation page: 2024-07-03T14:20:30,305 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-07-03T14:20:30,306 If you don't want 'galaxy.datatypes.display_applications.configs.qiime.qiime2' to be distributed and are 2024-07-03T14:20:30,306 already explicitly excluding 'galaxy.datatypes.display_applications.configs.qiime.qiime2' via 2024-07-03T14:20:30,307 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-07-03T14:20:30,307 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-07-03T14:20:30,308 combination with a more fine grained `package-data` configuration. 2024-07-03T14:20:30,308 You can read more about "package data files" on setuptools documentation page: 2024-07-03T14:20:30,309 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-07-03T14:20:30,311 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-07-03T14:20:30,311 even if it does not contain any `.py` files. 2024-07-03T14:20:30,312 On the other hand, currently there is no concept of package data 2024-07-03T14:20:30,312 directory, all directories are treated like packages. 2024-07-03T14:20:30,313 ******************************************************************************** 2024-07-03T14:20:30,313 !! 2024-07-03T14:20:30,314 check.warn(importable) 2024-07-03T14:20:30,315 /tmp/pip-build-env-51fn1skd/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'galaxy.datatypes.display_applications.configs.rviewer' is absent from the `packages` configuration. 2024-07-03T14:20:30,315 !! 2024-07-03T14:20:30,316 ******************************************************************************** 2024-07-03T14:20:30,317 ############################ 2024-07-03T14:20:30,317 # Package would be ignored # 2024-07-03T14:20:30,318 ############################ 2024-07-03T14:20:30,318 Python recognizes 'galaxy.datatypes.display_applications.configs.rviewer' as an importable package[^1], 2024-07-03T14:20:30,319 but it is absent from setuptools' `packages` configuration. 2024-07-03T14:20:30,320 This leads to an ambiguous overall configuration. If you want to distribute this 2024-07-03T14:20:30,320 package, please make sure that 'galaxy.datatypes.display_applications.configs.rviewer' is explicitly added 2024-07-03T14:20:30,321 to the `packages` configuration field. 2024-07-03T14:20:30,322 Alternatively, you can also rely on setuptools' discovery methods 2024-07-03T14:20:30,322 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-07-03T14:20:30,323 instead of `find_packages(...)`/`find:`). 2024-07-03T14:20:30,323 You can read more about "package discovery" on setuptools documentation page: 2024-07-03T14:20:30,324 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-07-03T14:20:30,325 If you don't want 'galaxy.datatypes.display_applications.configs.rviewer' to be distributed and are 2024-07-03T14:20:30,325 already explicitly excluding 'galaxy.datatypes.display_applications.configs.rviewer' via 2024-07-03T14:20:30,326 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-07-03T14:20:30,326 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-07-03T14:20:30,327 combination with a more fine grained `package-data` configuration. 2024-07-03T14:20:30,327 You can read more about "package data files" on setuptools documentation page: 2024-07-03T14:20:30,328 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-07-03T14:20:30,329 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-07-03T14:20:30,330 even if it does not contain any `.py` files. 2024-07-03T14:20:30,330 On the other hand, currently there is no concept of package data 2024-07-03T14:20:30,331 directory, all directories are treated like packages. 2024-07-03T14:20:30,331 ******************************************************************************** 2024-07-03T14:20:30,332 !! 2024-07-03T14:20:30,333 check.warn(importable) 2024-07-03T14:20:30,333 /tmp/pip-build-env-51fn1skd/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'galaxy.datatypes.display_applications.configs.ucsc' is absent from the `packages` configuration. 2024-07-03T14:20:30,333 !! 2024-07-03T14:20:30,334 ******************************************************************************** 2024-07-03T14:20:30,335 ############################ 2024-07-03T14:20:30,335 # Package would be ignored # 2024-07-03T14:20:30,336 ############################ 2024-07-03T14:20:30,336 Python recognizes 'galaxy.datatypes.display_applications.configs.ucsc' as an importable package[^1], 2024-07-03T14:20:30,337 but it is absent from setuptools' `packages` configuration. 2024-07-03T14:20:30,338 This leads to an ambiguous overall configuration. If you want to distribute this 2024-07-03T14:20:30,338 package, please make sure that 'galaxy.datatypes.display_applications.configs.ucsc' is explicitly added 2024-07-03T14:20:30,339 to the `packages` configuration field. 2024-07-03T14:20:30,340 Alternatively, you can also rely on setuptools' discovery methods 2024-07-03T14:20:30,340 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-07-03T14:20:30,340 instead of `find_packages(...)`/`find:`). 2024-07-03T14:20:30,341 You can read more about "package discovery" on setuptools documentation page: 2024-07-03T14:20:30,342 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-07-03T14:20:30,343 If you don't want 'galaxy.datatypes.display_applications.configs.ucsc' to be distributed and are 2024-07-03T14:20:30,344 already explicitly excluding 'galaxy.datatypes.display_applications.configs.ucsc' via 2024-07-03T14:20:30,344 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-07-03T14:20:30,345 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-07-03T14:20:30,345 combination with a more fine grained `package-data` configuration. 2024-07-03T14:20:30,346 You can read more about "package data files" on setuptools documentation page: 2024-07-03T14:20:30,347 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-07-03T14:20:30,348 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-07-03T14:20:30,349 even if it does not contain any `.py` files. 2024-07-03T14:20:30,349 On the other hand, currently there is no concept of package data 2024-07-03T14:20:30,350 directory, all directories are treated like packages. 2024-07-03T14:20:30,350 ******************************************************************************** 2024-07-03T14:20:30,351 !! 2024-07-03T14:20:30,351 check.warn(importable) 2024-07-03T14:20:30,352 /tmp/pip-build-env-51fn1skd/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'galaxy.datatypes.display_applications.xsd' is absent from the `packages` configuration. 2024-07-03T14:20:30,352 !! 2024-07-03T14:20:30,353 ******************************************************************************** 2024-07-03T14:20:30,353 ############################ 2024-07-03T14:20:30,354 # Package would be ignored # 2024-07-03T14:20:30,354 ############################ 2024-07-03T14:20:30,355 Python recognizes 'galaxy.datatypes.display_applications.xsd' as an importable package[^1], 2024-07-03T14:20:30,355 but it is absent from setuptools' `packages` configuration. 2024-07-03T14:20:30,356 This leads to an ambiguous overall configuration. If you want to distribute this 2024-07-03T14:20:30,357 package, please make sure that 'galaxy.datatypes.display_applications.xsd' is explicitly added 2024-07-03T14:20:30,357 to the `packages` configuration field. 2024-07-03T14:20:30,358 Alternatively, you can also rely on setuptools' discovery methods 2024-07-03T14:20:30,359 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-07-03T14:20:30,359 instead of `find_packages(...)`/`find:`). 2024-07-03T14:20:30,360 You can read more about "package discovery" on setuptools documentation page: 2024-07-03T14:20:30,361 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-07-03T14:20:30,362 If you don't want 'galaxy.datatypes.display_applications.xsd' to be distributed and are 2024-07-03T14:20:30,362 already explicitly excluding 'galaxy.datatypes.display_applications.xsd' via 2024-07-03T14:20:30,363 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-07-03T14:20:30,363 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-07-03T14:20:30,364 combination with a more fine grained `package-data` configuration. 2024-07-03T14:20:30,365 You can read more about "package data files" on setuptools documentation page: 2024-07-03T14:20:30,366 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-07-03T14:20:30,367 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-07-03T14:20:30,368 even if it does not contain any `.py` files. 2024-07-03T14:20:30,369 On the other hand, currently there is no concept of package data 2024-07-03T14:20:30,370 directory, all directories are treated like packages. 2024-07-03T14:20:30,370 ******************************************************************************** 2024-07-03T14:20:30,372 !! 2024-07-03T14:20:30,372 check.warn(importable) 2024-07-03T14:20:30,373 /tmp/pip-build-env-51fn1skd/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'galaxy.model.migrations.alembic' is absent from the `packages` configuration. 2024-07-03T14:20:30,373 !! 2024-07-03T14:20:30,375 ******************************************************************************** 2024-07-03T14:20:30,375 ############################ 2024-07-03T14:20:30,376 # Package would be ignored # 2024-07-03T14:20:30,376 ############################ 2024-07-03T14:20:30,377 Python recognizes 'galaxy.model.migrations.alembic' as an importable package[^1], 2024-07-03T14:20:30,377 but it is absent from setuptools' `packages` configuration. 2024-07-03T14:20:30,379 This leads to an ambiguous overall configuration. If you want to distribute this 2024-07-03T14:20:30,379 package, please make sure that 'galaxy.model.migrations.alembic' is explicitly added 2024-07-03T14:20:30,380 to the `packages` configuration field. 2024-07-03T14:20:30,381 Alternatively, you can also rely on setuptools' discovery methods 2024-07-03T14:20:30,381 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-07-03T14:20:30,382 instead of `find_packages(...)`/`find:`). 2024-07-03T14:20:30,383 You can read more about "package discovery" on setuptools documentation page: 2024-07-03T14:20:30,384 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-07-03T14:20:30,385 If you don't want 'galaxy.model.migrations.alembic' to be distributed and are 2024-07-03T14:20:30,385 already explicitly excluding 'galaxy.model.migrations.alembic' via 2024-07-03T14:20:30,386 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-07-03T14:20:30,387 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-07-03T14:20:30,387 combination with a more fine grained `package-data` configuration. 2024-07-03T14:20:30,388 You can read more about "package data files" on setuptools documentation page: 2024-07-03T14:20:30,389 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-07-03T14:20:30,391 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-07-03T14:20:30,392 even if it does not contain any `.py` files. 2024-07-03T14:20:30,392 On the other hand, currently there is no concept of package data 2024-07-03T14:20:30,393 directory, all directories are treated like packages. 2024-07-03T14:20:30,394 ******************************************************************************** 2024-07-03T14:20:30,395 !! 2024-07-03T14:20:30,395 check.warn(importable) 2024-07-03T14:20:30,396 /tmp/pip-build-env-51fn1skd/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'galaxy.model.migrations.alembic.versions_gxy' is absent from the `packages` configuration. 2024-07-03T14:20:30,397 !! 2024-07-03T14:20:30,398 ******************************************************************************** 2024-07-03T14:20:30,398 ############################ 2024-07-03T14:20:30,399 # Package would be ignored # 2024-07-03T14:20:30,399 ############################ 2024-07-03T14:20:30,400 Python recognizes 'galaxy.model.migrations.alembic.versions_gxy' as an importable package[^1], 2024-07-03T14:20:30,401 but it is absent from setuptools' `packages` configuration. 2024-07-03T14:20:30,402 This leads to an ambiguous overall configuration. If you want to distribute this 2024-07-03T14:20:30,402 package, please make sure that 'galaxy.model.migrations.alembic.versions_gxy' is explicitly added 2024-07-03T14:20:30,403 to the `packages` configuration field. 2024-07-03T14:20:30,404 Alternatively, you can also rely on setuptools' discovery methods 2024-07-03T14:20:30,405 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-07-03T14:20:30,406 instead of `find_packages(...)`/`find:`). 2024-07-03T14:20:30,407 You can read more about "package discovery" on setuptools documentation page: 2024-07-03T14:20:30,408 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-07-03T14:20:30,409 If you don't want 'galaxy.model.migrations.alembic.versions_gxy' to be distributed and are 2024-07-03T14:20:30,410 already explicitly excluding 'galaxy.model.migrations.alembic.versions_gxy' via 2024-07-03T14:20:30,410 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-07-03T14:20:30,411 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-07-03T14:20:30,412 combination with a more fine grained `package-data` configuration. 2024-07-03T14:20:30,413 You can read more about "package data files" on setuptools documentation page: 2024-07-03T14:20:30,414 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-07-03T14:20:30,415 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-07-03T14:20:30,416 even if it does not contain any `.py` files. 2024-07-03T14:20:30,416 On the other hand, currently there is no concept of package data 2024-07-03T14:20:30,417 directory, all directories are treated like packages. 2024-07-03T14:20:30,417 ******************************************************************************** 2024-07-03T14:20:30,419 !! 2024-07-03T14:20:30,419 check.warn(importable) 2024-07-03T14:20:30,420 /tmp/pip-build-env-51fn1skd/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'galaxy.model.migrations.alembic.versions_tsi' is absent from the `packages` configuration. 2024-07-03T14:20:30,420 !! 2024-07-03T14:20:30,421 ******************************************************************************** 2024-07-03T14:20:30,422 ############################ 2024-07-03T14:20:30,423 # Package would be ignored # 2024-07-03T14:20:30,423 ############################ 2024-07-03T14:20:30,424 Python recognizes 'galaxy.model.migrations.alembic.versions_tsi' as an importable package[^1], 2024-07-03T14:20:30,425 but it is absent from setuptools' `packages` configuration. 2024-07-03T14:20:30,426 This leads to an ambiguous overall configuration. If you want to distribute this 2024-07-03T14:20:30,426 package, please make sure that 'galaxy.model.migrations.alembic.versions_tsi' is explicitly added 2024-07-03T14:20:30,427 to the `packages` configuration field. 2024-07-03T14:20:30,428 Alternatively, you can also rely on setuptools' discovery methods 2024-07-03T14:20:30,429 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-07-03T14:20:30,430 instead of `find_packages(...)`/`find:`). 2024-07-03T14:20:30,431 You can read more about "package discovery" on setuptools documentation page: 2024-07-03T14:20:30,432 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-07-03T14:20:30,433 If you don't want 'galaxy.model.migrations.alembic.versions_tsi' to be distributed and are 2024-07-03T14:20:30,434 already explicitly excluding 'galaxy.model.migrations.alembic.versions_tsi' via 2024-07-03T14:20:30,435 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-07-03T14:20:30,435 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-07-03T14:20:30,436 combination with a more fine grained `package-data` configuration. 2024-07-03T14:20:30,437 You can read more about "package data files" on setuptools documentation page: 2024-07-03T14:20:30,438 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-07-03T14:20:30,440 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-07-03T14:20:30,441 even if it does not contain any `.py` files. 2024-07-03T14:20:30,441 On the other hand, currently there is no concept of package data 2024-07-03T14:20:30,442 directory, all directories are treated like packages. 2024-07-03T14:20:30,442 ******************************************************************************** 2024-07-03T14:20:30,443 !! 2024-07-03T14:20:30,444 check.warn(importable) 2024-07-03T14:20:30,444 copying galaxy/py.typed -> build/lib/galaxy 2024-07-03T14:20:30,445 copying galaxy/datatypes/set_metadata_tool.xml -> build/lib/galaxy/datatypes 2024-07-03T14:20:30,446 copying galaxy/model/migrations/README.md -> build/lib/galaxy/model/migrations 2024-07-03T14:20:30,446 copying galaxy/model/migrations/alembic.ini -> build/lib/galaxy/model/migrations 2024-07-03T14:20:30,447 creating build/lib/galaxy/model/migrations/alembic 2024-07-03T14:20:30,447 copying galaxy/model/migrations/alembic/env.py -> build/lib/galaxy/model/migrations/alembic 2024-07-03T14:20:30,448 copying galaxy/model/migrations/alembic/script.py.mako -> build/lib/galaxy/model/migrations/alembic 2024-07-03T14:20:30,448 creating build/lib/galaxy/model/migrations/alembic/versions_gxy 2024-07-03T14:20:30,449 copying galaxy/model/migrations/alembic/versions_gxy/186d4835587b_drop_job_state_history_update_time_.py -> build/lib/galaxy/model/migrations/alembic/versions_gxy 2024-07-03T14:20:30,449 copying galaxy/model/migrations/alembic/versions_gxy/2d749563e1fe_add_notification_system_tables.py -> build/lib/galaxy/model/migrations/alembic/versions_gxy 2024-07-03T14:20:30,450 copying galaxy/model/migrations/alembic/versions_gxy/2dc3386d091f_add_indexes_for_workflow_comment_.py -> build/lib/galaxy/model/migrations/alembic/versions_gxy 2024-07-03T14:20:30,450 copying galaxy/model/migrations/alembic/versions_gxy/303a5583a030_add_dispatched_column_to_notifications.py -> build/lib/galaxy/model/migrations/alembic/versions_gxy 2024-07-03T14:20:30,451 copying galaxy/model/migrations/alembic/versions_gxy/3100452fa030_add_workflow_invocation_message_table.py -> build/lib/galaxy/model/migrations/alembic/versions_gxy 2024-07-03T14:20:30,451 copying galaxy/model/migrations/alembic/versions_gxy/3356bc2ecfc4_drop_view.py -> build/lib/galaxy/model/migrations/alembic/versions_gxy 2024-07-03T14:20:30,452 copying galaxy/model/migrations/alembic/versions_gxy/3a2914d703ca_add_index_wf_r_s_s__workflow_invocation_.py -> build/lib/galaxy/model/migrations/alembic/versions_gxy 2024-07-03T14:20:30,453 copying galaxy/model/migrations/alembic/versions_gxy/460d0ecd1dd8_.py -> build/lib/galaxy/model/migrations/alembic/versions_gxy 2024-07-03T14:20:30,453 copying galaxy/model/migrations/alembic/versions_gxy/518c8438a91b_add_when_expression_column.py -> build/lib/galaxy/model/migrations/alembic/versions_gxy 2024-07-03T14:20:30,454 copying galaxy/model/migrations/alembic/versions_gxy/55f02fd8ab6c_add_index_on_hda_extension.py -> build/lib/galaxy/model/migrations/alembic/versions_gxy 2024-07-03T14:20:30,454 copying galaxy/model/migrations/alembic/versions_gxy/5924fbf10430_add_galaxy_url_column_to_notifications.py -> build/lib/galaxy/model/migrations/alembic/versions_gxy 2024-07-03T14:20:30,455 copying galaxy/model/migrations/alembic/versions_gxy/59e024ceaca1_add_export_association_table.py -> build/lib/galaxy/model/migrations/alembic/versions_gxy 2024-07-03T14:20:30,456 copying galaxy/model/migrations/alembic/versions_gxy/6a67bf27e6a6_deferred_data_tables.py -> build/lib/galaxy/model/migrations/alembic/versions_gxy 2024-07-03T14:20:30,456 copying galaxy/model/migrations/alembic/versions_gxy/8a19186a6ee7_add_columns_to_interactivetool_entry_point.py -> build/lib/galaxy/model/migrations/alembic/versions_gxy 2024-07-03T14:20:30,457 copying galaxy/model/migrations/alembic/versions_gxy/92fb564c7095_.py -> build/lib/galaxy/model/migrations/alembic/versions_gxy 2024-07-03T14:20:30,458 copying galaxy/model/migrations/alembic/versions_gxy/9540a051226e_preferred_object_store_ids.py -> build/lib/galaxy/model/migrations/alembic/versions_gxy 2024-07-03T14:20:30,458 copying galaxy/model/migrations/alembic/versions_gxy/987ce9839ecb_create_celery_user_rate_limit_table.py -> build/lib/galaxy/model/migrations/alembic/versions_gxy 2024-07-03T14:20:30,459 copying galaxy/model/migrations/alembic/versions_gxy/b182f655505f_add_workflow_source_metadata_column.py -> build/lib/galaxy/model/migrations/alembic/versions_gxy 2024-07-03T14:20:30,460 copying galaxy/model/migrations/alembic/versions_gxy/b855b714e8b8_make_api_keys_deleted_non_nullable.py -> build/lib/galaxy/model/migrations/alembic/versions_gxy 2024-07-03T14:20:30,460 copying galaxy/model/migrations/alembic/versions_gxy/c14a3c93d66a_add_user_defined_object_stores.py -> build/lib/galaxy/model/migrations/alembic/versions_gxy 2024-07-03T14:20:30,461 copying galaxy/model/migrations/alembic/versions_gxy/c14a3c93d66b_add_user_defined_file_sources.py -> build/lib/galaxy/model/migrations/alembic/versions_gxy 2024-07-03T14:20:30,461 copying galaxy/model/migrations/alembic/versions_gxy/c39f1de47a04_add_skipped_state_to_collection_job_.py -> build/lib/galaxy/model/migrations/alembic/versions_gxy 2024-07-03T14:20:30,462 copying galaxy/model/migrations/alembic/versions_gxy/c63848676caf_update_username_column_schema_and_data.py -> build/lib/galaxy/model/migrations/alembic/versions_gxy 2024-07-03T14:20:30,462 copying galaxy/model/migrations/alembic/versions_gxy/caa7742f7bca_add_index_wf_r_i_p__workflow_invocation_.py -> build/lib/galaxy/model/migrations/alembic/versions_gxy 2024-07-03T14:20:30,463 copying galaxy/model/migrations/alembic/versions_gxy/d0583094c8cd_add_quota_source_labels.py -> build/lib/galaxy/model/migrations/alembic/versions_gxy 2024-07-03T14:20:30,464 copying galaxy/model/migrations/alembic/versions_gxy/ddbdbc40bdc1_add_workflow_comment_table.py -> build/lib/galaxy/model/migrations/alembic/versions_gxy 2024-07-03T14:20:30,464 copying galaxy/model/migrations/alembic/versions_gxy/e0561d5fc8c7_add_archived_columns_to_history.py -> build/lib/galaxy/model/migrations/alembic/versions_gxy 2024-07-03T14:20:30,465 copying galaxy/model/migrations/alembic/versions_gxy/e0e3bb173ee6_add_column_deleted_to_api_keys.py -> build/lib/galaxy/model/migrations/alembic/versions_gxy 2024-07-03T14:20:30,465 copying galaxy/model/migrations/alembic/versions_gxy/e7b6dcb09efd_create_gxy_branch.py -> build/lib/galaxy/model/migrations/alembic/versions_gxy 2024-07-03T14:20:30,466 copying galaxy/model/migrations/alembic/versions_gxy/e93c5d0b47a9_alter_column_external_user_id.py -> build/lib/galaxy/model/migrations/alembic/versions_gxy 2024-07-03T14:20:30,467 creating build/lib/galaxy/model/migrations/alembic/versions_tsi 2024-07-03T14:20:30,467 copying galaxy/model/migrations/alembic/versions_tsi/d4a650f47a3c_create_tsi_branch.py -> build/lib/galaxy/model/migrations/alembic/versions_tsi 2024-07-03T14:20:30,468 copying galaxy/datatypes/converters/bam_to_bai.xml -> build/lib/galaxy/datatypes/converters 2024-07-03T14:20:30,468 copying galaxy/datatypes/converters/bam_to_bigwig_converter.xml -> build/lib/galaxy/datatypes/converters 2024-07-03T14:20:30,469 copying galaxy/datatypes/converters/bcf_bcf_uncompressed_converter.xml -> build/lib/galaxy/datatypes/converters 2024-07-03T14:20:30,469 copying galaxy/datatypes/converters/bed_gff_or_vcf_to_bigwig_converter.xml -> build/lib/galaxy/datatypes/converters 2024-07-03T14:20:30,470 copying galaxy/datatypes/converters/bed_to_fli_converter.xml -> build/lib/galaxy/datatypes/converters 2024-07-03T14:20:30,470 copying galaxy/datatypes/converters/bed_to_gff_converter.xml -> build/lib/galaxy/datatypes/converters 2024-07-03T14:20:30,471 copying galaxy/datatypes/converters/bed_to_interval_index_converter.xml -> build/lib/galaxy/datatypes/converters 2024-07-03T14:20:30,471 copying galaxy/datatypes/converters/bedgraph_to_bigwig_converter.xml -> build/lib/galaxy/datatypes/converters 2024-07-03T14:20:30,472 copying galaxy/datatypes/converters/bigwig_to_wig_converter.xml -> build/lib/galaxy/datatypes/converters 2024-07-03T14:20:30,472 copying galaxy/datatypes/converters/biom.xml -> build/lib/galaxy/datatypes/converters 2024-07-03T14:20:30,473 copying galaxy/datatypes/converters/bz2_to_uncompressed.xml -> build/lib/galaxy/datatypes/converters 2024-07-03T14:20:30,473 copying galaxy/datatypes/converters/cml_to_smi_converter.xml -> build/lib/galaxy/datatypes/converters 2024-07-03T14:20:30,474 copying galaxy/datatypes/converters/cram_to_bam_converter.xml -> build/lib/galaxy/datatypes/converters 2024-07-03T14:20:30,474 copying galaxy/datatypes/converters/csv_to_tabular.xml -> build/lib/galaxy/datatypes/converters 2024-07-03T14:20:30,474 copying galaxy/datatypes/converters/fasta_to_2bit.xml -> build/lib/galaxy/datatypes/converters 2024-07-03T14:20:30,475 copying galaxy/datatypes/converters/fasta_to_bowtie_base_index_converter.xml -> build/lib/galaxy/datatypes/converters 2024-07-03T14:20:30,475 copying galaxy/datatypes/converters/fasta_to_bowtie_color_index_converter.xml -> build/lib/galaxy/datatypes/converters 2024-07-03T14:20:30,476 copying galaxy/datatypes/converters/fasta_to_fai.xml -> build/lib/galaxy/datatypes/converters 2024-07-03T14:20:30,476 copying galaxy/datatypes/converters/fasta_to_len.xml -> build/lib/galaxy/datatypes/converters 2024-07-03T14:20:30,477 copying galaxy/datatypes/converters/fasta_to_tabular_converter.xml -> build/lib/galaxy/datatypes/converters 2024-07-03T14:20:30,477 copying galaxy/datatypes/converters/fastq_to_fqtoc.xml -> build/lib/galaxy/datatypes/converters 2024-07-03T14:20:30,478 copying galaxy/datatypes/converters/fastqsolexa_to_fasta_converter.xml -> build/lib/galaxy/datatypes/converters 2024-07-03T14:20:30,478 copying galaxy/datatypes/converters/fastqsolexa_to_qual_converter.xml -> build/lib/galaxy/datatypes/converters 2024-07-03T14:20:30,479 copying galaxy/datatypes/converters/gff_to_bed_converter.xml -> build/lib/galaxy/datatypes/converters 2024-07-03T14:20:30,479 copying galaxy/datatypes/converters/gff_to_fli_converter.xml -> build/lib/galaxy/datatypes/converters 2024-07-03T14:20:30,480 copying galaxy/datatypes/converters/gff_to_interval_index_converter.xml -> build/lib/galaxy/datatypes/converters 2024-07-03T14:20:30,480 copying galaxy/datatypes/converters/gro_to_pdb.xml -> build/lib/galaxy/datatypes/converters 2024-07-03T14:20:30,481 copying galaxy/datatypes/converters/gz_to_uncompressed.xml -> build/lib/galaxy/datatypes/converters 2024-07-03T14:20:30,481 copying galaxy/datatypes/converters/inchi_to_mol_converter.xml -> build/lib/galaxy/datatypes/converters 2024-07-03T14:20:30,481 copying galaxy/datatypes/converters/interval_to_bed12_converter.xml -> build/lib/galaxy/datatypes/converters 2024-07-03T14:20:30,482 copying galaxy/datatypes/converters/interval_to_bed6_converter.xml -> build/lib/galaxy/datatypes/converters 2024-07-03T14:20:30,483 copying galaxy/datatypes/converters/interval_to_bed_converter.xml -> build/lib/galaxy/datatypes/converters 2024-07-03T14:20:30,483 copying galaxy/datatypes/converters/interval_to_bedstrict_converter.xml -> build/lib/galaxy/datatypes/converters 2024-07-03T14:20:30,483 copying galaxy/datatypes/converters/interval_to_bgzip_converter.xml -> build/lib/galaxy/datatypes/converters 2024-07-03T14:20:30,484 copying galaxy/datatypes/converters/interval_to_bigwig_converter.xml -> build/lib/galaxy/datatypes/converters 2024-07-03T14:20:30,484 copying galaxy/datatypes/converters/interval_to_interval_index_converter.xml -> build/lib/galaxy/datatypes/converters 2024-07-03T14:20:30,485 copying galaxy/datatypes/converters/interval_to_tabix_converter.xml -> build/lib/galaxy/datatypes/converters 2024-07-03T14:20:30,485 copying galaxy/datatypes/converters/len_to_linecount.xml -> build/lib/galaxy/datatypes/converters 2024-07-03T14:20:30,486 copying galaxy/datatypes/converters/lped_to_fped_converter.xml -> build/lib/galaxy/datatypes/converters 2024-07-03T14:20:30,486 copying galaxy/datatypes/converters/lped_to_pbed_converter.xml -> build/lib/galaxy/datatypes/converters 2024-07-03T14:20:30,487 copying galaxy/datatypes/converters/maf_to_fasta_converter.xml -> build/lib/galaxy/datatypes/converters 2024-07-03T14:20:30,487 copying galaxy/datatypes/converters/maf_to_interval_converter.xml -> build/lib/galaxy/datatypes/converters 2024-07-03T14:20:30,488 copying galaxy/datatypes/converters/mdconvert.xml -> build/lib/galaxy/datatypes/converters 2024-07-03T14:20:30,488 copying galaxy/datatypes/converters/mol2_to_mol_converter.xml -> build/lib/galaxy/datatypes/converters 2024-07-03T14:20:30,489 copying galaxy/datatypes/converters/molecules_converter.xml -> build/lib/galaxy/datatypes/converters 2024-07-03T14:20:30,489 copying galaxy/datatypes/converters/neostorezip_to_neostore_converter.xml -> build/lib/galaxy/datatypes/converters 2024-07-03T14:20:30,489 copying galaxy/datatypes/converters/parquet_to_csv_converter.xml -> build/lib/galaxy/datatypes/converters 2024-07-03T14:20:30,490 copying galaxy/datatypes/converters/pbed_ldreduced_converter.xml -> build/lib/galaxy/datatypes/converters 2024-07-03T14:20:30,490 copying galaxy/datatypes/converters/pbed_to_lped_converter.xml -> build/lib/galaxy/datatypes/converters 2024-07-03T14:20:30,491 copying galaxy/datatypes/converters/pdb_to_gro.xml -> build/lib/galaxy/datatypes/converters 2024-07-03T14:20:30,491 copying galaxy/datatypes/converters/picard_interval_list_to_bed6_converter.xml -> build/lib/galaxy/datatypes/converters 2024-07-03T14:20:30,492 copying galaxy/datatypes/converters/pileup_to_interval_index_converter.xml -> build/lib/galaxy/datatypes/converters 2024-07-03T14:20:30,492 copying galaxy/datatypes/converters/ref_to_seq_taxonomy_converter.xml -> build/lib/galaxy/datatypes/converters 2024-07-03T14:20:30,492 copying galaxy/datatypes/converters/sam_to_bigwig_converter.xml -> build/lib/galaxy/datatypes/converters 2024-07-03T14:20:30,493 copying galaxy/datatypes/converters/sam_to_unsorted_bam.xml -> build/lib/galaxy/datatypes/converters 2024-07-03T14:20:30,494 copying galaxy/datatypes/converters/smi_to_mol_converter.xml -> build/lib/galaxy/datatypes/converters 2024-07-03T14:20:30,494 copying galaxy/datatypes/converters/smi_to_smi_converter.xml -> build/lib/galaxy/datatypes/converters 2024-07-03T14:20:30,494 copying galaxy/datatypes/converters/tabular_to_csv.xml -> build/lib/galaxy/datatypes/converters 2024-07-03T14:20:30,495 copying galaxy/datatypes/converters/tabular_to_dbnsfp.xml -> build/lib/galaxy/datatypes/converters 2024-07-03T14:20:30,495 copying galaxy/datatypes/converters/tar_to_directory.xml -> build/lib/galaxy/datatypes/converters 2024-07-03T14:20:30,496 copying galaxy/datatypes/converters/to_coordinate_sorted_bam.xml -> build/lib/galaxy/datatypes/converters 2024-07-03T14:20:30,496 copying galaxy/datatypes/converters/to_qname_sorted_bam.xml -> build/lib/galaxy/datatypes/converters 2024-07-03T14:20:30,497 copying galaxy/datatypes/converters/uncompressed_to_gz.xml -> build/lib/galaxy/datatypes/converters 2024-07-03T14:20:30,497 copying galaxy/datatypes/converters/vcf_bgzip_to_tabix_converter.xml -> build/lib/galaxy/datatypes/converters 2024-07-03T14:20:30,498 copying galaxy/datatypes/converters/vcf_to_interval_index_converter.xml -> build/lib/galaxy/datatypes/converters 2024-07-03T14:20:30,499 copying galaxy/datatypes/converters/vcf_to_vcf_bgzip_converter.xml -> build/lib/galaxy/datatypes/converters 2024-07-03T14:20:30,499 copying galaxy/datatypes/converters/wig_to_bigwig_converter.xml -> build/lib/galaxy/datatypes/converters 2024-07-03T14:20:30,500 copying galaxy/datatypes/converters/wiggle_to_simple_converter.xml -> build/lib/galaxy/datatypes/converters 2024-07-03T14:20:30,500 creating build/lib/galaxy/datatypes/display_applications/configs 2024-07-03T14:20:30,501 creating build/lib/galaxy/datatypes/display_applications/configs/biom 2024-07-03T14:20:30,501 copying galaxy/datatypes/display_applications/configs/biom/biom_simple.xml -> build/lib/galaxy/datatypes/display_applications/configs/biom 2024-07-03T14:20:30,502 creating build/lib/galaxy/datatypes/display_applications/configs/ensembl 2024-07-03T14:20:30,503 copying galaxy/datatypes/display_applications/configs/ensembl/ensembl_bam.xml -> build/lib/galaxy/datatypes/display_applications/configs/ensembl 2024-07-03T14:20:30,503 copying galaxy/datatypes/display_applications/configs/ensembl/ensembl_gff.xml -> build/lib/galaxy/datatypes/display_applications/configs/ensembl 2024-07-03T14:20:30,504 copying galaxy/datatypes/display_applications/configs/ensembl/ensembl_interval_as_bed.xml -> build/lib/galaxy/datatypes/display_applications/configs/ensembl 2024-07-03T14:20:30,504 creating build/lib/galaxy/datatypes/display_applications/configs/gbrowse 2024-07-03T14:20:30,504 copying galaxy/datatypes/display_applications/configs/gbrowse/gbrowse_gff.xml -> build/lib/galaxy/datatypes/display_applications/configs/gbrowse 2024-07-03T14:20:30,505 copying galaxy/datatypes/display_applications/configs/gbrowse/gbrowse_interval_as_bed.xml -> build/lib/galaxy/datatypes/display_applications/configs/gbrowse 2024-07-03T14:20:30,505 copying galaxy/datatypes/display_applications/configs/gbrowse/gbrowse_wig.xml -> build/lib/galaxy/datatypes/display_applications/configs/gbrowse 2024-07-03T14:20:30,506 creating build/lib/galaxy/datatypes/display_applications/configs/icn3d 2024-07-03T14:20:30,506 copying galaxy/datatypes/display_applications/configs/icn3d/icn3d_simple.xml -> build/lib/galaxy/datatypes/display_applications/configs/icn3d 2024-07-03T14:20:30,507 creating build/lib/galaxy/datatypes/display_applications/configs/igb 2024-07-03T14:20:30,507 copying galaxy/datatypes/display_applications/configs/igb/bam.xml -> build/lib/galaxy/datatypes/display_applications/configs/igb 2024-07-03T14:20:30,507 copying galaxy/datatypes/display_applications/configs/igb/bb.xml -> build/lib/galaxy/datatypes/display_applications/configs/igb 2024-07-03T14:20:30,508 copying galaxy/datatypes/display_applications/configs/igb/bed.xml -> build/lib/galaxy/datatypes/display_applications/configs/igb 2024-07-03T14:20:30,509 copying galaxy/datatypes/display_applications/configs/igb/bedgraph.xml -> build/lib/galaxy/datatypes/display_applications/configs/igb 2024-07-03T14:20:30,509 copying galaxy/datatypes/display_applications/configs/igb/bigwig.xml -> build/lib/galaxy/datatypes/display_applications/configs/igb 2024-07-03T14:20:30,510 copying galaxy/datatypes/display_applications/configs/igb/gtf.xml -> build/lib/galaxy/datatypes/display_applications/configs/igb 2024-07-03T14:20:30,511 copying galaxy/datatypes/display_applications/configs/igb/wig.xml -> build/lib/galaxy/datatypes/display_applications/configs/igb 2024-07-03T14:20:30,511 creating build/lib/galaxy/datatypes/display_applications/configs/igv 2024-07-03T14:20:30,512 copying galaxy/datatypes/display_applications/configs/igv/bam.xml -> build/lib/galaxy/datatypes/display_applications/configs/igv 2024-07-03T14:20:30,512 copying galaxy/datatypes/display_applications/configs/igv/bigwig.xml -> build/lib/galaxy/datatypes/display_applications/configs/igv 2024-07-03T14:20:30,513 copying galaxy/datatypes/display_applications/configs/igv/genbank.xml -> build/lib/galaxy/datatypes/display_applications/configs/igv 2024-07-03T14:20:30,514 copying galaxy/datatypes/display_applications/configs/igv/genome_fasta.xml -> build/lib/galaxy/datatypes/display_applications/configs/igv 2024-07-03T14:20:30,514 copying galaxy/datatypes/display_applications/configs/igv/gff.xml -> build/lib/galaxy/datatypes/display_applications/configs/igv 2024-07-03T14:20:30,514 copying galaxy/datatypes/display_applications/configs/igv/interval_as_bed.xml -> build/lib/galaxy/datatypes/display_applications/configs/igv 2024-07-03T14:20:30,515 copying galaxy/datatypes/display_applications/configs/igv/vcf.xml -> build/lib/galaxy/datatypes/display_applications/configs/igv 2024-07-03T14:20:30,516 creating build/lib/galaxy/datatypes/display_applications/configs/image 2024-07-03T14:20:30,516 copying galaxy/datatypes/display_applications/configs/image/avivator.xml -> build/lib/galaxy/datatypes/display_applications/configs/image 2024-07-03T14:20:30,517 creating build/lib/galaxy/datatypes/display_applications/configs/intermine 2024-07-03T14:20:30,518 copying galaxy/datatypes/display_applications/configs/intermine/intermine_simple.xml -> build/lib/galaxy/datatypes/display_applications/configs/intermine 2024-07-03T14:20:30,518 creating build/lib/galaxy/datatypes/display_applications/configs/iobio 2024-07-03T14:20:30,519 copying galaxy/datatypes/display_applications/configs/iobio/bam.xml -> build/lib/galaxy/datatypes/display_applications/configs/iobio 2024-07-03T14:20:30,519 copying galaxy/datatypes/display_applications/configs/iobio/vcf.xml -> build/lib/galaxy/datatypes/display_applications/configs/iobio 2024-07-03T14:20:30,519 creating build/lib/galaxy/datatypes/display_applications/configs/minerva 2024-07-03T14:20:30,520 copying galaxy/datatypes/display_applications/configs/minerva/tabular.xml -> build/lib/galaxy/datatypes/display_applications/configs/minerva 2024-07-03T14:20:30,520 creating build/lib/galaxy/datatypes/display_applications/configs/qiime 2024-07-03T14:20:30,521 creating build/lib/galaxy/datatypes/display_applications/configs/qiime/qiime2 2024-07-03T14:20:30,521 copying galaxy/datatypes/display_applications/configs/qiime/qiime2/q2view.xml -> build/lib/galaxy/datatypes/display_applications/configs/qiime/qiime2 2024-07-03T14:20:30,521 creating build/lib/galaxy/datatypes/display_applications/configs/rviewer 2024-07-03T14:20:30,522 copying galaxy/datatypes/display_applications/configs/rviewer/bed.xml -> build/lib/galaxy/datatypes/display_applications/configs/rviewer 2024-07-03T14:20:30,522 copying galaxy/datatypes/display_applications/configs/rviewer/vcf.xml -> build/lib/galaxy/datatypes/display_applications/configs/rviewer 2024-07-03T14:20:30,523 creating build/lib/galaxy/datatypes/display_applications/configs/ucsc 2024-07-03T14:20:30,523 copying galaxy/datatypes/display_applications/configs/ucsc/bam.xml -> build/lib/galaxy/datatypes/display_applications/configs/ucsc 2024-07-03T14:20:30,524 copying galaxy/datatypes/display_applications/configs/ucsc/bigbed.xml -> build/lib/galaxy/datatypes/display_applications/configs/ucsc 2024-07-03T14:20:30,524 copying galaxy/datatypes/display_applications/configs/ucsc/bigwig.xml -> build/lib/galaxy/datatypes/display_applications/configs/ucsc 2024-07-03T14:20:30,525 copying galaxy/datatypes/display_applications/configs/ucsc/interval_as_bed.xml -> build/lib/galaxy/datatypes/display_applications/configs/ucsc 2024-07-03T14:20:30,526 copying galaxy/datatypes/display_applications/configs/ucsc/maf_customtrack.xml -> build/lib/galaxy/datatypes/display_applications/configs/ucsc 2024-07-03T14:20:30,526 copying galaxy/datatypes/display_applications/configs/ucsc/trackhub.xml -> build/lib/galaxy/datatypes/display_applications/configs/ucsc 2024-07-03T14:20:30,527 copying galaxy/datatypes/display_applications/configs/ucsc/vcf.xml -> build/lib/galaxy/datatypes/display_applications/configs/ucsc 2024-07-03T14:20:30,527 creating build/lib/galaxy/datatypes/display_applications/xsd 2024-07-03T14:20:30,528 copying galaxy/datatypes/display_applications/xsd/geda.xsd -> build/lib/galaxy/datatypes/display_applications/xsd 2024-07-03T14:20:30,528 installing to build/bdist.linux-armv7l/wheel 2024-07-03T14:20:30,529 running install 2024-07-03T14:20:30,546 running install_lib 2024-07-03T14:20:30,552 creating build/bdist.linux-armv7l 2024-07-03T14:20:30,553 creating build/bdist.linux-armv7l/wheel 2024-07-03T14:20:30,554 creating build/bdist.linux-armv7l/wheel/galaxy 2024-07-03T14:20:30,556 creating build/bdist.linux-armv7l/wheel/galaxy/model 2024-07-03T14:20:30,557 copying build/lib/galaxy/model/database_object_names.py -> build/bdist.linux-armv7l/wheel/galaxy/model 2024-07-03T14:20:30,559 copying build/lib/galaxy/model/database_heartbeat.py -> build/bdist.linux-armv7l/wheel/galaxy/model 2024-07-03T14:20:30,561 creating build/bdist.linux-armv7l/wheel/galaxy/model/store 2024-07-03T14:20:30,562 copying build/lib/galaxy/model/store/load_objects.py -> build/bdist.linux-armv7l/wheel/galaxy/model/store 2024-07-03T14:20:30,564 copying build/lib/galaxy/model/store/_bco_convert_utils.py -> build/bdist.linux-armv7l/wheel/galaxy/model/store 2024-07-03T14:20:30,566 copying build/lib/galaxy/model/store/discover.py -> build/bdist.linux-armv7l/wheel/galaxy/model/store 2024-07-03T14:20:30,568 copying build/lib/galaxy/model/store/build_objects.py -> build/bdist.linux-armv7l/wheel/galaxy/model/store 2024-07-03T14:20:30,571 copying build/lib/galaxy/model/store/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/model/store 2024-07-03T14:20:30,575 copying build/lib/galaxy/model/store/ro_crate_utils.py -> build/bdist.linux-armv7l/wheel/galaxy/model/store 2024-07-03T14:20:30,577 copying build/lib/galaxy/model/item_attrs.py -> build/bdist.linux-armv7l/wheel/galaxy/model 2024-07-03T14:20:30,579 copying build/lib/galaxy/model/base.py -> build/bdist.linux-armv7l/wheel/galaxy/model 2024-07-03T14:20:30,581 copying build/lib/galaxy/model/index_filter_util.py -> build/bdist.linux-armv7l/wheel/galaxy/model 2024-07-03T14:20:30,584 creating build/bdist.linux-armv7l/wheel/galaxy/model/migrations 2024-07-03T14:20:30,584 copying build/lib/galaxy/model/migrations/util.py -> build/bdist.linux-armv7l/wheel/galaxy/model/migrations 2024-07-03T14:20:30,587 copying build/lib/galaxy/model/migrations/alembic.ini -> build/bdist.linux-armv7l/wheel/galaxy/model/migrations 2024-07-03T14:20:30,588 copying build/lib/galaxy/model/migrations/exceptions.py -> build/bdist.linux-armv7l/wheel/galaxy/model/migrations 2024-07-03T14:20:30,590 copying build/lib/galaxy/model/migrations/README.md -> build/bdist.linux-armv7l/wheel/galaxy/model/migrations 2024-07-03T14:20:30,592 copying build/lib/galaxy/model/migrations/scripts.py -> build/bdist.linux-armv7l/wheel/galaxy/model/migrations 2024-07-03T14:20:30,594 copying build/lib/galaxy/model/migrations/base.py -> build/bdist.linux-armv7l/wheel/galaxy/model/migrations 2024-07-03T14:20:30,596 copying build/lib/galaxy/model/migrations/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/model/migrations 2024-07-03T14:20:30,599 creating build/bdist.linux-armv7l/wheel/galaxy/model/migrations/alembic 2024-07-03T14:20:30,601 creating build/bdist.linux-armv7l/wheel/galaxy/model/migrations/alembic/versions_gxy 2024-07-03T14:20:30,602 copying build/lib/galaxy/model/migrations/alembic/versions_gxy/6a67bf27e6a6_deferred_data_tables.py -> build/bdist.linux-armv7l/wheel/galaxy/model/migrations/alembic/versions_gxy 2024-07-03T14:20:30,604 copying build/lib/galaxy/model/migrations/alembic/versions_gxy/8a19186a6ee7_add_columns_to_interactivetool_entry_point.py -> build/bdist.linux-armv7l/wheel/galaxy/model/migrations/alembic/versions_gxy 2024-07-03T14:20:30,606 copying build/lib/galaxy/model/migrations/alembic/versions_gxy/3a2914d703ca_add_index_wf_r_s_s__workflow_invocation_.py -> build/bdist.linux-armv7l/wheel/galaxy/model/migrations/alembic/versions_gxy 2024-07-03T14:20:30,608 copying build/lib/galaxy/model/migrations/alembic/versions_gxy/ddbdbc40bdc1_add_workflow_comment_table.py -> build/bdist.linux-armv7l/wheel/galaxy/model/migrations/alembic/versions_gxy 2024-07-03T14:20:30,610 copying build/lib/galaxy/model/migrations/alembic/versions_gxy/5924fbf10430_add_galaxy_url_column_to_notifications.py -> build/bdist.linux-armv7l/wheel/galaxy/model/migrations/alembic/versions_gxy 2024-07-03T14:20:30,612 copying build/lib/galaxy/model/migrations/alembic/versions_gxy/303a5583a030_add_dispatched_column_to_notifications.py -> build/bdist.linux-armv7l/wheel/galaxy/model/migrations/alembic/versions_gxy 2024-07-03T14:20:30,614 copying build/lib/galaxy/model/migrations/alembic/versions_gxy/3356bc2ecfc4_drop_view.py -> build/bdist.linux-armv7l/wheel/galaxy/model/migrations/alembic/versions_gxy 2024-07-03T14:20:30,616 copying build/lib/galaxy/model/migrations/alembic/versions_gxy/460d0ecd1dd8_.py -> build/bdist.linux-armv7l/wheel/galaxy/model/migrations/alembic/versions_gxy 2024-07-03T14:20:30,619 copying build/lib/galaxy/model/migrations/alembic/versions_gxy/c39f1de47a04_add_skipped_state_to_collection_job_.py -> build/bdist.linux-armv7l/wheel/galaxy/model/migrations/alembic/versions_gxy 2024-07-03T14:20:30,620 copying build/lib/galaxy/model/migrations/alembic/versions_gxy/c14a3c93d66b_add_user_defined_file_sources.py -> build/bdist.linux-armv7l/wheel/galaxy/model/migrations/alembic/versions_gxy 2024-07-03T14:20:30,622 copying build/lib/galaxy/model/migrations/alembic/versions_gxy/55f02fd8ab6c_add_index_on_hda_extension.py -> build/bdist.linux-armv7l/wheel/galaxy/model/migrations/alembic/versions_gxy 2024-07-03T14:20:30,624 copying build/lib/galaxy/model/migrations/alembic/versions_gxy/987ce9839ecb_create_celery_user_rate_limit_table.py -> build/bdist.linux-armv7l/wheel/galaxy/model/migrations/alembic/versions_gxy 2024-07-03T14:20:30,626 copying build/lib/galaxy/model/migrations/alembic/versions_gxy/9540a051226e_preferred_object_store_ids.py -> build/bdist.linux-armv7l/wheel/galaxy/model/migrations/alembic/versions_gxy 2024-07-03T14:20:30,628 copying build/lib/galaxy/model/migrations/alembic/versions_gxy/e0561d5fc8c7_add_archived_columns_to_history.py -> build/bdist.linux-armv7l/wheel/galaxy/model/migrations/alembic/versions_gxy 2024-07-03T14:20:30,629 copying build/lib/galaxy/model/migrations/alembic/versions_gxy/518c8438a91b_add_when_expression_column.py -> build/bdist.linux-armv7l/wheel/galaxy/model/migrations/alembic/versions_gxy 2024-07-03T14:20:30,631 copying build/lib/galaxy/model/migrations/alembic/versions_gxy/e0e3bb173ee6_add_column_deleted_to_api_keys.py -> build/bdist.linux-armv7l/wheel/galaxy/model/migrations/alembic/versions_gxy 2024-07-03T14:20:30,633 copying build/lib/galaxy/model/migrations/alembic/versions_gxy/3100452fa030_add_workflow_invocation_message_table.py -> build/bdist.linux-armv7l/wheel/galaxy/model/migrations/alembic/versions_gxy 2024-07-03T14:20:30,634 copying build/lib/galaxy/model/migrations/alembic/versions_gxy/b855b714e8b8_make_api_keys_deleted_non_nullable.py -> build/bdist.linux-armv7l/wheel/galaxy/model/migrations/alembic/versions_gxy 2024-07-03T14:20:30,636 copying build/lib/galaxy/model/migrations/alembic/versions_gxy/c14a3c93d66a_add_user_defined_object_stores.py -> build/bdist.linux-armv7l/wheel/galaxy/model/migrations/alembic/versions_gxy 2024-07-03T14:20:30,638 copying build/lib/galaxy/model/migrations/alembic/versions_gxy/e7b6dcb09efd_create_gxy_branch.py -> build/bdist.linux-armv7l/wheel/galaxy/model/migrations/alembic/versions_gxy 2024-07-03T14:20:30,640 copying build/lib/galaxy/model/migrations/alembic/versions_gxy/e93c5d0b47a9_alter_column_external_user_id.py -> build/bdist.linux-armv7l/wheel/galaxy/model/migrations/alembic/versions_gxy 2024-07-03T14:20:30,641 copying build/lib/galaxy/model/migrations/alembic/versions_gxy/d0583094c8cd_add_quota_source_labels.py -> build/bdist.linux-armv7l/wheel/galaxy/model/migrations/alembic/versions_gxy 2024-07-03T14:20:30,643 copying build/lib/galaxy/model/migrations/alembic/versions_gxy/2d749563e1fe_add_notification_system_tables.py -> build/bdist.linux-armv7l/wheel/galaxy/model/migrations/alembic/versions_gxy 2024-07-03T14:20:30,645 copying build/lib/galaxy/model/migrations/alembic/versions_gxy/92fb564c7095_.py -> build/bdist.linux-armv7l/wheel/galaxy/model/migrations/alembic/versions_gxy 2024-07-03T14:20:30,647 copying build/lib/galaxy/model/migrations/alembic/versions_gxy/186d4835587b_drop_job_state_history_update_time_.py -> build/bdist.linux-armv7l/wheel/galaxy/model/migrations/alembic/versions_gxy 2024-07-03T14:20:30,649 copying build/lib/galaxy/model/migrations/alembic/versions_gxy/2dc3386d091f_add_indexes_for_workflow_comment_.py -> build/bdist.linux-armv7l/wheel/galaxy/model/migrations/alembic/versions_gxy 2024-07-03T14:20:30,651 copying build/lib/galaxy/model/migrations/alembic/versions_gxy/caa7742f7bca_add_index_wf_r_i_p__workflow_invocation_.py -> build/bdist.linux-armv7l/wheel/galaxy/model/migrations/alembic/versions_gxy 2024-07-03T14:20:30,653 copying build/lib/galaxy/model/migrations/alembic/versions_gxy/c63848676caf_update_username_column_schema_and_data.py -> build/bdist.linux-armv7l/wheel/galaxy/model/migrations/alembic/versions_gxy 2024-07-03T14:20:30,655 copying build/lib/galaxy/model/migrations/alembic/versions_gxy/59e024ceaca1_add_export_association_table.py -> build/bdist.linux-armv7l/wheel/galaxy/model/migrations/alembic/versions_gxy 2024-07-03T14:20:30,656 copying build/lib/galaxy/model/migrations/alembic/versions_gxy/b182f655505f_add_workflow_source_metadata_column.py -> build/bdist.linux-armv7l/wheel/galaxy/model/migrations/alembic/versions_gxy 2024-07-03T14:20:30,659 creating build/bdist.linux-armv7l/wheel/galaxy/model/migrations/alembic/versions_tsi 2024-07-03T14:20:30,660 copying build/lib/galaxy/model/migrations/alembic/versions_tsi/d4a650f47a3c_create_tsi_branch.py -> build/bdist.linux-armv7l/wheel/galaxy/model/migrations/alembic/versions_tsi 2024-07-03T14:20:30,661 copying build/lib/galaxy/model/migrations/alembic/script.py.mako -> build/bdist.linux-armv7l/wheel/galaxy/model/migrations/alembic 2024-07-03T14:20:30,663 copying build/lib/galaxy/model/migrations/alembic/env.py -> build/bdist.linux-armv7l/wheel/galaxy/model/migrations/alembic 2024-07-03T14:20:30,665 copying build/lib/galaxy/model/migrations/dbscript.py -> build/bdist.linux-armv7l/wheel/galaxy/model/migrations 2024-07-03T14:20:30,667 copying build/lib/galaxy/model/metadata.py -> build/bdist.linux-armv7l/wheel/galaxy/model 2024-07-03T14:20:30,669 copying build/lib/galaxy/model/custom_types.py -> build/bdist.linux-armv7l/wheel/galaxy/model 2024-07-03T14:20:30,672 creating build/bdist.linux-armv7l/wheel/galaxy/model/tool_shed_install 2024-07-03T14:20:30,673 copying build/lib/galaxy/model/tool_shed_install/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/model/tool_shed_install 2024-07-03T14:20:30,676 copying build/lib/galaxy/model/tool_shed_install/mapping.py -> build/bdist.linux-armv7l/wheel/galaxy/model/tool_shed_install 2024-07-03T14:20:30,677 copying build/lib/galaxy/model/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/model 2024-07-03T14:20:30,690 creating build/bdist.linux-armv7l/wheel/galaxy/model/scripts 2024-07-03T14:20:30,691 copying build/lib/galaxy/model/scripts/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/model/scripts 2024-07-03T14:20:30,693 copying build/lib/galaxy/model/scripts/prune_history_table.py -> build/bdist.linux-armv7l/wheel/galaxy/model/scripts 2024-07-03T14:20:30,694 copying build/lib/galaxy/model/scripts/history_table_pruner.py -> build/bdist.linux-armv7l/wheel/galaxy/model/scripts 2024-07-03T14:20:30,697 creating build/bdist.linux-armv7l/wheel/galaxy/model/unittest_utils 2024-07-03T14:20:30,698 copying build/lib/galaxy/model/unittest_utils/model_testing_utils.py -> build/bdist.linux-armv7l/wheel/galaxy/model/unittest_utils 2024-07-03T14:20:30,700 copying build/lib/galaxy/model/unittest_utils/beaker_testing_utils.py -> build/bdist.linux-armv7l/wheel/galaxy/model/unittest_utils 2024-07-03T14:20:30,702 copying build/lib/galaxy/model/unittest_utils/store_fixtures.py -> build/bdist.linux-armv7l/wheel/galaxy/model/unittest_utils 2024-07-03T14:20:30,704 copying build/lib/galaxy/model/unittest_utils/migration_scripts_testing_utils.py -> build/bdist.linux-armv7l/wheel/galaxy/model/unittest_utils 2024-07-03T14:20:30,706 copying build/lib/galaxy/model/unittest_utils/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/model/unittest_utils 2024-07-03T14:20:30,708 copying build/lib/galaxy/model/unittest_utils/data_app.py -> build/bdist.linux-armv7l/wheel/galaxy/model/unittest_utils 2024-07-03T14:20:30,710 creating build/bdist.linux-armv7l/wheel/galaxy/model/orm 2024-07-03T14:20:30,711 copying build/lib/galaxy/model/orm/util.py -> build/bdist.linux-armv7l/wheel/galaxy/model/orm 2024-07-03T14:20:30,713 copying build/lib/galaxy/model/orm/scripts.py -> build/bdist.linux-armv7l/wheel/galaxy/model/orm 2024-07-03T14:20:30,715 copying build/lib/galaxy/model/orm/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/model/orm 2024-07-03T14:20:30,716 copying build/lib/galaxy/model/orm/engine_factory.py -> build/bdist.linux-armv7l/wheel/galaxy/model/orm 2024-07-03T14:20:30,718 copying build/lib/galaxy/model/orm/now.py -> build/bdist.linux-armv7l/wheel/galaxy/model/orm 2024-07-03T14:20:30,720 copying build/lib/galaxy/model/none_like.py -> build/bdist.linux-armv7l/wheel/galaxy/model 2024-07-03T14:20:30,722 creating build/bdist.linux-armv7l/wheel/galaxy/model/dataset_collections 2024-07-03T14:20:30,723 copying build/lib/galaxy/model/dataset_collections/type_description.py -> build/bdist.linux-armv7l/wheel/galaxy/model/dataset_collections 2024-07-03T14:20:30,725 copying build/lib/galaxy/model/dataset_collections/structure.py -> build/bdist.linux-armv7l/wheel/galaxy/model/dataset_collections 2024-07-03T14:20:30,728 creating build/bdist.linux-armv7l/wheel/galaxy/model/dataset_collections/types 2024-07-03T14:20:30,729 copying build/lib/galaxy/model/dataset_collections/types/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/model/dataset_collections/types 2024-07-03T14:20:30,730 copying build/lib/galaxy/model/dataset_collections/types/list.py -> build/bdist.linux-armv7l/wheel/galaxy/model/dataset_collections/types 2024-07-03T14:20:30,732 copying build/lib/galaxy/model/dataset_collections/types/paired.py -> build/bdist.linux-armv7l/wheel/galaxy/model/dataset_collections/types 2024-07-03T14:20:30,734 copying build/lib/galaxy/model/dataset_collections/matching.py -> build/bdist.linux-armv7l/wheel/galaxy/model/dataset_collections 2024-07-03T14:20:30,736 copying build/lib/galaxy/model/dataset_collections/builder.py -> build/bdist.linux-armv7l/wheel/galaxy/model/dataset_collections 2024-07-03T14:20:30,738 copying build/lib/galaxy/model/dataset_collections/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/model/dataset_collections 2024-07-03T14:20:30,739 copying build/lib/galaxy/model/dataset_collections/registry.py -> build/bdist.linux-armv7l/wheel/galaxy/model/dataset_collections 2024-07-03T14:20:30,741 copying build/lib/galaxy/model/dataset_collections/subcollections.py -> build/bdist.linux-armv7l/wheel/galaxy/model/dataset_collections 2024-07-03T14:20:30,742 copying build/lib/galaxy/model/mapping.py -> build/bdist.linux-armv7l/wheel/galaxy/model 2024-07-03T14:20:30,744 copying build/lib/galaxy/model/security.py -> build/bdist.linux-armv7l/wheel/galaxy/model 2024-07-03T14:20:30,748 copying build/lib/galaxy/model/database_utils.py -> build/bdist.linux-armv7l/wheel/galaxy/model 2024-07-03T14:20:30,750 copying build/lib/galaxy/model/deferred.py -> build/bdist.linux-armv7l/wheel/galaxy/model 2024-07-03T14:20:30,753 creating build/bdist.linux-armv7l/wheel/galaxy/model/triggers 2024-07-03T14:20:30,753 copying build/lib/galaxy/model/triggers/update_audit_table.py -> build/bdist.linux-armv7l/wheel/galaxy/model/triggers 2024-07-03T14:20:30,756 copying build/lib/galaxy/model/triggers/utils.py -> build/bdist.linux-armv7l/wheel/galaxy/model/triggers 2024-07-03T14:20:30,758 copying build/lib/galaxy/model/triggers/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/model/triggers 2024-07-03T14:20:30,759 copying build/lib/galaxy/model/triggers/history_update_time_field.py -> build/bdist.linux-armv7l/wheel/galaxy/model/triggers 2024-07-03T14:20:30,761 copying build/lib/galaxy/model/tags.py -> build/bdist.linux-armv7l/wheel/galaxy/model 2024-07-03T14:20:30,763 copying build/lib/galaxy/model/scoped_session.py -> build/bdist.linux-armv7l/wheel/galaxy/model 2024-07-03T14:20:30,766 creating build/bdist.linux-armv7l/wheel/galaxy/datatypes 2024-07-03T14:20:30,767 copying build/lib/galaxy/datatypes/data.py -> build/bdist.linux-armv7l/wheel/galaxy/datatypes 2024-07-03T14:20:30,771 copying build/lib/galaxy/datatypes/xml.py -> build/bdist.linux-armv7l/wheel/galaxy/datatypes 2024-07-03T14:20:30,773 copying build/lib/galaxy/datatypes/speech.py -> build/bdist.linux-armv7l/wheel/galaxy/datatypes 2024-07-03T14:20:30,775 copying build/lib/galaxy/datatypes/annotation.py -> build/bdist.linux-armv7l/wheel/galaxy/datatypes 2024-07-03T14:20:30,777 copying build/lib/galaxy/datatypes/assembly.py -> build/bdist.linux-armv7l/wheel/galaxy/datatypes 2024-07-03T14:20:30,780 creating build/bdist.linux-armv7l/wheel/galaxy/datatypes/dataproviders 2024-07-03T14:20:30,781 copying build/lib/galaxy/datatypes/dataproviders/exceptions.py -> build/bdist.linux-armv7l/wheel/galaxy/datatypes/dataproviders 2024-07-03T14:20:30,783 copying build/lib/galaxy/datatypes/dataproviders/chunk.py -> build/bdist.linux-armv7l/wheel/galaxy/datatypes/dataproviders 2024-07-03T14:20:30,785 copying build/lib/galaxy/datatypes/dataproviders/external.py -> build/bdist.linux-armv7l/wheel/galaxy/datatypes/dataproviders 2024-07-03T14:20:30,787 copying build/lib/galaxy/datatypes/dataproviders/base.py -> build/bdist.linux-armv7l/wheel/galaxy/datatypes/dataproviders 2024-07-03T14:20:30,789 copying build/lib/galaxy/datatypes/dataproviders/decorators.py -> build/bdist.linux-armv7l/wheel/galaxy/datatypes/dataproviders 2024-07-03T14:20:30,791 copying build/lib/galaxy/datatypes/dataproviders/hierarchy.py -> build/bdist.linux-armv7l/wheel/galaxy/datatypes/dataproviders 2024-07-03T14:20:30,793 copying build/lib/galaxy/datatypes/dataproviders/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/datatypes/dataproviders 2024-07-03T14:20:30,794 copying build/lib/galaxy/datatypes/dataproviders/line.py -> build/bdist.linux-armv7l/wheel/galaxy/datatypes/dataproviders 2024-07-03T14:20:30,796 copying build/lib/galaxy/datatypes/dataproviders/column.py -> build/bdist.linux-armv7l/wheel/galaxy/datatypes/dataproviders 2024-07-03T14:20:30,798 copying build/lib/galaxy/datatypes/dataproviders/dataset.py -> build/bdist.linux-armv7l/wheel/galaxy/datatypes/dataproviders 2024-07-03T14:20:30,801 copying build/lib/galaxy/datatypes/spaln.py -> build/bdist.linux-armv7l/wheel/galaxy/datatypes 2024-07-03T14:20:30,803 copying build/lib/galaxy/datatypes/media.py -> build/bdist.linux-armv7l/wheel/galaxy/datatypes 2024-07-03T14:20:30,805 copying build/lib/galaxy/datatypes/larch.py -> build/bdist.linux-armv7l/wheel/galaxy/datatypes 2024-07-03T14:20:30,807 copying build/lib/galaxy/datatypes/ngsindex.py -> build/bdist.linux-armv7l/wheel/galaxy/datatypes 2024-07-03T14:20:30,809 copying build/lib/galaxy/datatypes/chain.py -> build/bdist.linux-armv7l/wheel/galaxy/datatypes 2024-07-03T14:20:30,811 copying build/lib/galaxy/datatypes/protocols.py -> build/bdist.linux-armv7l/wheel/galaxy/datatypes 2024-07-03T14:20:30,813 copying build/lib/galaxy/datatypes/metacyto.py -> build/bdist.linux-armv7l/wheel/galaxy/datatypes 2024-07-03T14:20:30,815 copying build/lib/galaxy/datatypes/graph.py -> build/bdist.linux-armv7l/wheel/galaxy/datatypes 2024-07-03T14:20:30,817 copying build/lib/galaxy/datatypes/tabular.py -> build/bdist.linux-armv7l/wheel/galaxy/datatypes 2024-07-03T14:20:30,820 copying build/lib/galaxy/datatypes/isa.py -> build/bdist.linux-armv7l/wheel/galaxy/datatypes 2024-07-03T14:20:30,823 copying build/lib/galaxy/datatypes/metadata.py -> build/bdist.linux-armv7l/wheel/galaxy/datatypes 2024-07-03T14:20:30,824 copying build/lib/galaxy/datatypes/anvio.py -> build/bdist.linux-armv7l/wheel/galaxy/datatypes 2024-07-03T14:20:30,827 copying build/lib/galaxy/datatypes/sequence.py -> build/bdist.linux-armv7l/wheel/galaxy/datatypes 2024-07-03T14:20:30,830 copying build/lib/galaxy/datatypes/qualityscore.py -> build/bdist.linux-armv7l/wheel/galaxy/datatypes 2024-07-03T14:20:30,832 copying build/lib/galaxy/datatypes/goldenpath.py -> build/bdist.linux-armv7l/wheel/galaxy/datatypes 2024-07-03T14:20:30,835 copying build/lib/galaxy/datatypes/neo4j.py -> build/bdist.linux-armv7l/wheel/galaxy/datatypes 2024-07-03T14:20:30,837 copying build/lib/galaxy/datatypes/proteomics.py -> build/bdist.linux-armv7l/wheel/galaxy/datatypes 2024-07-03T14:20:30,840 copying build/lib/galaxy/datatypes/upload_util.py -> build/bdist.linux-armv7l/wheel/galaxy/datatypes 2024-07-03T14:20:30,842 copying build/lib/galaxy/datatypes/flow.py -> build/bdist.linux-armv7l/wheel/galaxy/datatypes 2024-07-03T14:20:30,844 copying build/lib/galaxy/datatypes/gis.py -> build/bdist.linux-armv7l/wheel/galaxy/datatypes 2024-07-03T14:20:30,847 copying build/lib/galaxy/datatypes/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/datatypes 2024-07-03T14:20:30,849 copying build/lib/galaxy/datatypes/triples.py -> build/bdist.linux-armv7l/wheel/galaxy/datatypes 2024-07-03T14:20:30,851 copying build/lib/galaxy/datatypes/plant_tribes.py -> build/bdist.linux-armv7l/wheel/galaxy/datatypes 2024-07-03T14:20:30,854 copying build/lib/galaxy/datatypes/blast.py -> build/bdist.linux-armv7l/wheel/galaxy/datatypes 2024-07-03T14:20:30,856 copying build/lib/galaxy/datatypes/binary.py -> build/bdist.linux-armv7l/wheel/galaxy/datatypes 2024-07-03T14:20:30,861 copying build/lib/galaxy/datatypes/text.py -> build/bdist.linux-armv7l/wheel/galaxy/datatypes 2024-07-03T14:20:30,864 copying build/lib/galaxy/datatypes/registry.py -> build/bdist.linux-armv7l/wheel/galaxy/datatypes 2024-07-03T14:20:30,868 copying build/lib/galaxy/datatypes/phylip.py -> build/bdist.linux-armv7l/wheel/galaxy/datatypes 2024-07-03T14:20:30,872 creating build/bdist.linux-armv7l/wheel/galaxy/datatypes/converters 2024-07-03T14:20:30,873 copying build/lib/galaxy/datatypes/converters/fasta_to_len.py -> build/bdist.linux-armv7l/wheel/galaxy/datatypes/converters 2024-07-03T14:20:30,875 copying build/lib/galaxy/datatypes/converters/biom.xml -> build/bdist.linux-armv7l/wheel/galaxy/datatypes/converters 2024-07-03T14:20:30,877 copying build/lib/galaxy/datatypes/converters/lped_to_fped_converter.xml -> build/bdist.linux-armv7l/wheel/galaxy/datatypes/converters 2024-07-03T14:20:30,879 copying build/lib/galaxy/datatypes/converters/to_qname_sorted_bam.xml -> build/bdist.linux-armv7l/wheel/galaxy/datatypes/converters 2024-07-03T14:20:30,881 copying build/lib/galaxy/datatypes/converters/inchi_to_mol_converter.xml -> build/bdist.linux-armv7l/wheel/galaxy/datatypes/converters 2024-07-03T14:20:30,883 copying build/lib/galaxy/datatypes/converters/maf_to_fasta_converter.py -> build/bdist.linux-armv7l/wheel/galaxy/datatypes/converters 2024-07-03T14:20:30,885 copying build/lib/galaxy/datatypes/converters/bed_to_gff_converter.py -> build/bdist.linux-armv7l/wheel/galaxy/datatypes/converters 2024-07-03T14:20:30,887 copying build/lib/galaxy/datatypes/converters/gff_to_interval_index_converter.xml -> build/bdist.linux-armv7l/wheel/galaxy/datatypes/converters 2024-07-03T14:20:30,889 copying build/lib/galaxy/datatypes/converters/sam_to_unsorted_bam.xml -> build/bdist.linux-armv7l/wheel/galaxy/datatypes/converters 2024-07-03T14:20:30,891 copying build/lib/galaxy/datatypes/converters/vcf_to_vcf_bgzip_converter.xml -> build/bdist.linux-armv7l/wheel/galaxy/datatypes/converters 2024-07-03T14:20:30,893 copying build/lib/galaxy/datatypes/converters/csv_to_tabular.xml -> build/bdist.linux-armv7l/wheel/galaxy/datatypes/converters 2024-07-03T14:20:30,895 copying build/lib/galaxy/datatypes/converters/gff_to_interval_index_converter.py -> build/bdist.linux-armv7l/wheel/galaxy/datatypes/converters 2024-07-03T14:20:30,897 copying build/lib/galaxy/datatypes/converters/cml_to_smi_converter.xml -> build/bdist.linux-armv7l/wheel/galaxy/datatypes/converters 2024-07-03T14:20:30,899 copying build/lib/galaxy/datatypes/converters/fastq_to_fqtoc.py -> build/bdist.linux-armv7l/wheel/galaxy/datatypes/converters 2024-07-03T14:20:30,901 copying build/lib/galaxy/datatypes/converters/to_coordinate_sorted_bam.xml -> build/bdist.linux-armv7l/wheel/galaxy/datatypes/converters 2024-07-03T14:20:30,903 copying build/lib/galaxy/datatypes/converters/interval_to_bedstrict_converter.xml -> build/bdist.linux-armv7l/wheel/galaxy/datatypes/converters 2024-07-03T14:20:30,904 copying build/lib/galaxy/datatypes/converters/tabular_to_dbnsfp.xml -> build/bdist.linux-armv7l/wheel/galaxy/datatypes/converters 2024-07-03T14:20:30,906 copying build/lib/galaxy/datatypes/converters/bam_to_bai.xml -> build/bdist.linux-armv7l/wheel/galaxy/datatypes/converters 2024-07-03T14:20:30,908 copying build/lib/galaxy/datatypes/converters/bed_to_fli_converter.xml -> build/bdist.linux-armv7l/wheel/galaxy/datatypes/converters 2024-07-03T14:20:30,911 copying build/lib/galaxy/datatypes/converters/picard_interval_list_to_bed6_converter.py -> build/bdist.linux-armv7l/wheel/galaxy/datatypes/converters 2024-07-03T14:20:30,913 copying build/lib/galaxy/datatypes/converters/ref_to_seq_taxonomy_converter.py -> build/bdist.linux-armv7l/wheel/galaxy/datatypes/converters 2024-07-03T14:20:30,915 copying build/lib/galaxy/datatypes/converters/parquet_to_csv_converter.py -> build/bdist.linux-armv7l/wheel/galaxy/datatypes/converters 2024-07-03T14:20:30,917 copying build/lib/galaxy/datatypes/converters/fastq_to_fqtoc.xml -> build/bdist.linux-armv7l/wheel/galaxy/datatypes/converters 2024-07-03T14:20:30,919 copying build/lib/galaxy/datatypes/converters/pbed_ldreduced_converter.py -> build/bdist.linux-armv7l/wheel/galaxy/datatypes/converters 2024-07-03T14:20:30,921 copying build/lib/galaxy/datatypes/converters/fasta_to_tabular_converter.py -> build/bdist.linux-armv7l/wheel/galaxy/datatypes/converters 2024-07-03T14:20:30,923 copying build/lib/galaxy/datatypes/converters/lped_to_pbed_converter.py -> build/bdist.linux-armv7l/wheel/galaxy/datatypes/converters 2024-07-03T14:20:30,925 copying build/lib/galaxy/datatypes/converters/neostorezip_to_neostore_converter.xml -> build/bdist.linux-armv7l/wheel/galaxy/datatypes/converters 2024-07-03T14:20:30,927 copying build/lib/galaxy/datatypes/converters/pbed_to_lped_converter.xml -> build/bdist.linux-armv7l/wheel/galaxy/datatypes/converters 2024-07-03T14:20:30,929 copying build/lib/galaxy/datatypes/converters/parquet_to_csv_converter.xml -> build/bdist.linux-armv7l/wheel/galaxy/datatypes/converters 2024-07-03T14:20:30,931 copying build/lib/galaxy/datatypes/converters/interval_to_bed12_converter.xml -> build/bdist.linux-armv7l/wheel/galaxy/datatypes/converters 2024-07-03T14:20:30,933 copying build/lib/galaxy/datatypes/converters/interval_to_bed6_converter.xml -> build/bdist.linux-armv7l/wheel/galaxy/datatypes/converters 2024-07-03T14:20:30,935 copying build/lib/galaxy/datatypes/converters/maf_to_interval_converter.py -> build/bdist.linux-armv7l/wheel/galaxy/datatypes/converters 2024-07-03T14:20:30,937 copying build/lib/galaxy/datatypes/converters/fastqsolexa_to_qual_converter.xml -> build/bdist.linux-armv7l/wheel/galaxy/datatypes/converters 2024-07-03T14:20:30,939 copying build/lib/galaxy/datatypes/converters/smi_to_mol_converter.xml -> build/bdist.linux-armv7l/wheel/galaxy/datatypes/converters 2024-07-03T14:20:30,941 copying build/lib/galaxy/datatypes/converters/lped_to_pbed_converter.xml -> build/bdist.linux-armv7l/wheel/galaxy/datatypes/converters 2024-07-03T14:20:30,943 copying build/lib/galaxy/datatypes/converters/bed_to_gff_converter.xml -> build/bdist.linux-armv7l/wheel/galaxy/datatypes/converters 2024-07-03T14:20:30,945 copying build/lib/galaxy/datatypes/converters/uncompressed_to_gz.xml -> build/bdist.linux-armv7l/wheel/galaxy/datatypes/converters 2024-07-03T14:20:30,947 copying build/lib/galaxy/datatypes/converters/interval_to_tabix_converter.xml -> build/bdist.linux-armv7l/wheel/galaxy/datatypes/converters 2024-07-03T14:20:30,949 copying build/lib/galaxy/datatypes/converters/tar_to_directory.xml -> build/bdist.linux-armv7l/wheel/galaxy/datatypes/converters 2024-07-03T14:20:30,951 copying build/lib/galaxy/datatypes/converters/fastqsolexa_to_qual_converter.py -> build/bdist.linux-armv7l/wheel/galaxy/datatypes/converters 2024-07-03T14:20:30,953 copying build/lib/galaxy/datatypes/converters/interval_to_interval_index_converter.py -> build/bdist.linux-armv7l/wheel/galaxy/datatypes/converters 2024-07-03T14:20:30,955 copying build/lib/galaxy/datatypes/converters/interval_to_bed_converter.xml -> build/bdist.linux-armv7l/wheel/galaxy/datatypes/converters 2024-07-03T14:20:30,957 copying build/lib/galaxy/datatypes/converters/gz_to_uncompressed.xml -> build/bdist.linux-armv7l/wheel/galaxy/datatypes/converters 2024-07-03T14:20:30,959 copying build/lib/galaxy/datatypes/converters/mdconvert.xml -> build/bdist.linux-armv7l/wheel/galaxy/datatypes/converters 2024-07-03T14:20:30,961 copying build/lib/galaxy/datatypes/converters/vcf_to_interval_index_converter.xml -> build/bdist.linux-armv7l/wheel/galaxy/datatypes/converters 2024-07-03T14:20:30,963 copying build/lib/galaxy/datatypes/converters/bz2_to_uncompressed.xml -> build/bdist.linux-armv7l/wheel/galaxy/datatypes/converters 2024-07-03T14:20:30,965 copying build/lib/galaxy/datatypes/converters/maf_to_interval_converter.xml -> build/bdist.linux-armv7l/wheel/galaxy/datatypes/converters 2024-07-03T14:20:30,967 copying build/lib/galaxy/datatypes/converters/len_to_linecount.xml -> build/bdist.linux-armv7l/wheel/galaxy/datatypes/converters 2024-07-03T14:20:30,969 copying build/lib/galaxy/datatypes/converters/vcf_bgzip_to_tabix_converter.xml -> build/bdist.linux-armv7l/wheel/galaxy/datatypes/converters 2024-07-03T14:20:30,971 copying build/lib/galaxy/datatypes/converters/fasta_to_bowtie_base_index_converter.xml -> build/bdist.linux-armv7l/wheel/galaxy/datatypes/converters 2024-07-03T14:20:30,973 copying build/lib/galaxy/datatypes/converters/sam_to_bigwig_converter.xml -> build/bdist.linux-armv7l/wheel/galaxy/datatypes/converters 2024-07-03T14:20:30,975 copying build/lib/galaxy/datatypes/converters/bigwig_to_wig_converter.xml -> build/bdist.linux-armv7l/wheel/galaxy/datatypes/converters 2024-07-03T14:20:30,977 copying build/lib/galaxy/datatypes/converters/bed_gff_or_vcf_to_bigwig_converter.xml -> build/bdist.linux-armv7l/wheel/galaxy/datatypes/converters 2024-07-03T14:20:30,979 copying build/lib/galaxy/datatypes/converters/ref_to_seq_taxonomy_converter.xml -> build/bdist.linux-armv7l/wheel/galaxy/datatypes/converters 2024-07-03T14:20:30,981 copying build/lib/galaxy/datatypes/converters/molecules_converter.xml -> build/bdist.linux-armv7l/wheel/galaxy/datatypes/converters 2024-07-03T14:20:30,983 copying build/lib/galaxy/datatypes/converters/bcf_bcf_uncompressed_converter.xml -> build/bdist.linux-armv7l/wheel/galaxy/datatypes/converters 2024-07-03T14:20:30,985 copying build/lib/galaxy/datatypes/converters/fasta_to_fai.xml -> build/bdist.linux-armv7l/wheel/galaxy/datatypes/converters 2024-07-03T14:20:30,987 copying build/lib/galaxy/datatypes/converters/pileup_to_interval_index_converter.xml -> build/bdist.linux-armv7l/wheel/galaxy/datatypes/converters 2024-07-03T14:20:30,989 copying build/lib/galaxy/datatypes/converters/maf_to_fasta_converter.xml -> build/bdist.linux-armv7l/wheel/galaxy/datatypes/converters 2024-07-03T14:20:30,991 copying build/lib/galaxy/datatypes/converters/interval_to_interval_index_converter.xml -> build/bdist.linux-armv7l/wheel/galaxy/datatypes/converters 2024-07-03T14:20:30,993 copying build/lib/galaxy/datatypes/converters/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/datatypes/converters 2024-07-03T14:20:30,994 copying build/lib/galaxy/datatypes/converters/interval_to_fli.py -> build/bdist.linux-armv7l/wheel/galaxy/datatypes/converters 2024-07-03T14:20:30,996 copying build/lib/galaxy/datatypes/converters/wig_to_bigwig_converter.xml -> build/bdist.linux-armv7l/wheel/galaxy/datatypes/converters 2024-07-03T14:20:30,998 copying build/lib/galaxy/datatypes/converters/interval_to_bedstrict_converter.py -> build/bdist.linux-armv7l/wheel/galaxy/datatypes/converters 2024-07-03T14:20:31,000 copying build/lib/galaxy/datatypes/converters/tabular_to_csv.xml -> build/bdist.linux-armv7l/wheel/galaxy/datatypes/converters 2024-07-03T14:20:31,002 copying build/lib/galaxy/datatypes/converters/lped_to_fped_converter.py -> build/bdist.linux-armv7l/wheel/galaxy/datatypes/converters 2024-07-03T14:20:31,004 copying build/lib/galaxy/datatypes/converters/gro_to_pdb.xml -> build/bdist.linux-armv7l/wheel/galaxy/datatypes/converters 2024-07-03T14:20:31,007 copying build/lib/galaxy/datatypes/converters/interval_to_bgzip_converter.xml -> build/bdist.linux-armv7l/wheel/galaxy/datatypes/converters 2024-07-03T14:20:31,009 copying build/lib/galaxy/datatypes/converters/gff_to_fli_converter.xml -> build/bdist.linux-armv7l/wheel/galaxy/datatypes/converters 2024-07-03T14:20:31,011 copying build/lib/galaxy/datatypes/converters/bam_to_bigwig_converter.xml -> build/bdist.linux-armv7l/wheel/galaxy/datatypes/converters 2024-07-03T14:20:31,013 copying build/lib/galaxy/datatypes/converters/interval_to_bigwig_converter.xml -> build/bdist.linux-armv7l/wheel/galaxy/datatypes/converters 2024-07-03T14:20:31,015 copying build/lib/galaxy/datatypes/converters/wiggle_to_simple_converter.py -> build/bdist.linux-armv7l/wheel/galaxy/datatypes/converters 2024-07-03T14:20:31,017 copying build/lib/galaxy/datatypes/converters/wiggle_to_simple_converter.xml -> build/bdist.linux-armv7l/wheel/galaxy/datatypes/converters 2024-07-03T14:20:31,019 copying build/lib/galaxy/datatypes/converters/fastqsolexa_to_fasta_converter.py -> build/bdist.linux-armv7l/wheel/galaxy/datatypes/converters 2024-07-03T14:20:31,021 copying build/lib/galaxy/datatypes/converters/pbed_to_lped_converter.py -> build/bdist.linux-armv7l/wheel/galaxy/datatypes/converters 2024-07-03T14:20:31,023 copying build/lib/galaxy/datatypes/converters/fasta_to_2bit.xml -> build/bdist.linux-armv7l/wheel/galaxy/datatypes/converters 2024-07-03T14:20:31,025 copying build/lib/galaxy/datatypes/converters/interval_to_bed_converter.py -> build/bdist.linux-armv7l/wheel/galaxy/datatypes/converters 2024-07-03T14:20:31,027 copying build/lib/galaxy/datatypes/converters/mol2_to_mol_converter.xml -> build/bdist.linux-armv7l/wheel/galaxy/datatypes/converters 2024-07-03T14:20:31,028 copying build/lib/galaxy/datatypes/converters/fastqsolexa_to_fasta_converter.xml -> build/bdist.linux-armv7l/wheel/galaxy/datatypes/converters 2024-07-03T14:20:31,030 copying build/lib/galaxy/datatypes/converters/fasta_to_tabular_converter.xml -> build/bdist.linux-armv7l/wheel/galaxy/datatypes/converters 2024-07-03T14:20:31,031 copying build/lib/galaxy/datatypes/converters/pileup_to_interval_index_converter.py -> build/bdist.linux-armv7l/wheel/galaxy/datatypes/converters 2024-07-03T14:20:31,033 copying build/lib/galaxy/datatypes/converters/gff_to_bed_converter.py -> build/bdist.linux-armv7l/wheel/galaxy/datatypes/converters 2024-07-03T14:20:31,035 copying build/lib/galaxy/datatypes/converters/pbed_ldreduced_converter.xml -> build/bdist.linux-armv7l/wheel/galaxy/datatypes/converters 2024-07-03T14:20:31,037 copying build/lib/galaxy/datatypes/converters/gff_to_bed_converter.xml -> build/bdist.linux-armv7l/wheel/galaxy/datatypes/converters 2024-07-03T14:20:31,038 copying build/lib/galaxy/datatypes/converters/picard_interval_list_to_bed6_converter.xml -> build/bdist.linux-armv7l/wheel/galaxy/datatypes/converters 2024-07-03T14:20:31,040 copying build/lib/galaxy/datatypes/converters/fasta_to_len.xml -> build/bdist.linux-armv7l/wheel/galaxy/datatypes/converters 2024-07-03T14:20:31,042 copying build/lib/galaxy/datatypes/converters/bed_to_interval_index_converter.xml -> build/bdist.linux-armv7l/wheel/galaxy/datatypes/converters 2024-07-03T14:20:31,044 copying build/lib/galaxy/datatypes/converters/smi_to_smi_converter.xml -> build/bdist.linux-armv7l/wheel/galaxy/datatypes/converters 2024-07-03T14:20:31,046 copying build/lib/galaxy/datatypes/converters/pdb_to_gro.xml -> build/bdist.linux-armv7l/wheel/galaxy/datatypes/converters 2024-07-03T14:20:31,047 copying build/lib/galaxy/datatypes/converters/vcf_to_interval_index_converter.py -> build/bdist.linux-armv7l/wheel/galaxy/datatypes/converters 2024-07-03T14:20:31,049 copying build/lib/galaxy/datatypes/converters/tabular_csv.py -> build/bdist.linux-armv7l/wheel/galaxy/datatypes/converters 2024-07-03T14:20:31,051 copying build/lib/galaxy/datatypes/converters/cram_to_bam_converter.xml -> build/bdist.linux-armv7l/wheel/galaxy/datatypes/converters 2024-07-03T14:20:31,052 copying build/lib/galaxy/datatypes/converters/fasta_to_bowtie_color_index_converter.xml -> build/bdist.linux-armv7l/wheel/galaxy/datatypes/converters 2024-07-03T14:20:31,054 copying build/lib/galaxy/datatypes/converters/bedgraph_to_bigwig_converter.xml -> build/bdist.linux-armv7l/wheel/galaxy/datatypes/converters 2024-07-03T14:20:31,056 copying build/lib/galaxy/datatypes/coverage.py -> build/bdist.linux-armv7l/wheel/galaxy/datatypes 2024-07-03T14:20:31,058 copying build/lib/galaxy/datatypes/msa.py -> build/bdist.linux-armv7l/wheel/galaxy/datatypes 2024-07-03T14:20:31,061 creating build/bdist.linux-armv7l/wheel/galaxy/datatypes/display_applications 2024-07-03T14:20:31,062 copying build/lib/galaxy/datatypes/display_applications/util.py -> build/bdist.linux-armv7l/wheel/galaxy/datatypes/display_applications 2024-07-03T14:20:31,065 creating build/bdist.linux-armv7l/wheel/galaxy/datatypes/display_applications/xsd 2024-07-03T14:20:31,066 copying build/lib/galaxy/datatypes/display_applications/xsd/geda.xsd -> build/bdist.linux-armv7l/wheel/galaxy/datatypes/display_applications/xsd 2024-07-03T14:20:31,069 creating build/bdist.linux-armv7l/wheel/galaxy/datatypes/display_applications/configs 2024-07-03T14:20:31,071 creating build/bdist.linux-armv7l/wheel/galaxy/datatypes/display_applications/configs/image 2024-07-03T14:20:31,072 copying build/lib/galaxy/datatypes/display_applications/configs/image/avivator.xml -> build/bdist.linux-armv7l/wheel/galaxy/datatypes/display_applications/configs/image 2024-07-03T14:20:31,074 creating build/bdist.linux-armv7l/wheel/galaxy/datatypes/display_applications/configs/minerva 2024-07-03T14:20:31,075 copying build/lib/galaxy/datatypes/display_applications/configs/minerva/tabular.xml -> build/bdist.linux-armv7l/wheel/galaxy/datatypes/display_applications/configs/minerva 2024-07-03T14:20:31,077 creating build/bdist.linux-armv7l/wheel/galaxy/datatypes/display_applications/configs/biom 2024-07-03T14:20:31,078 copying build/lib/galaxy/datatypes/display_applications/configs/biom/biom_simple.xml -> build/bdist.linux-armv7l/wheel/galaxy/datatypes/display_applications/configs/biom 2024-07-03T14:20:31,080 creating build/bdist.linux-armv7l/wheel/galaxy/datatypes/display_applications/configs/igv 2024-07-03T14:20:31,081 copying build/lib/galaxy/datatypes/display_applications/configs/igv/interval_as_bed.xml -> build/bdist.linux-armv7l/wheel/galaxy/datatypes/display_applications/configs/igv 2024-07-03T14:20:31,084 copying build/lib/galaxy/datatypes/display_applications/configs/igv/bam.xml -> build/bdist.linux-armv7l/wheel/galaxy/datatypes/display_applications/configs/igv 2024-07-03T14:20:31,086 copying build/lib/galaxy/datatypes/display_applications/configs/igv/gff.xml -> build/bdist.linux-armv7l/wheel/galaxy/datatypes/display_applications/configs/igv 2024-07-03T14:20:31,089 copying build/lib/galaxy/datatypes/display_applications/configs/igv/bigwig.xml -> build/bdist.linux-armv7l/wheel/galaxy/datatypes/display_applications/configs/igv 2024-07-03T14:20:31,091 copying build/lib/galaxy/datatypes/display_applications/configs/igv/genbank.xml -> build/bdist.linux-armv7l/wheel/galaxy/datatypes/display_applications/configs/igv 2024-07-03T14:20:31,093 copying build/lib/galaxy/datatypes/display_applications/configs/igv/vcf.xml -> build/bdist.linux-armv7l/wheel/galaxy/datatypes/display_applications/configs/igv 2024-07-03T14:20:31,095 copying build/lib/galaxy/datatypes/display_applications/configs/igv/genome_fasta.xml -> build/bdist.linux-armv7l/wheel/galaxy/datatypes/display_applications/configs/igv 2024-07-03T14:20:31,098 creating build/bdist.linux-armv7l/wheel/galaxy/datatypes/display_applications/configs/icn3d 2024-07-03T14:20:31,099 copying build/lib/galaxy/datatypes/display_applications/configs/icn3d/icn3d_simple.xml -> build/bdist.linux-armv7l/wheel/galaxy/datatypes/display_applications/configs/icn3d 2024-07-03T14:20:31,101 creating build/bdist.linux-armv7l/wheel/galaxy/datatypes/display_applications/configs/rviewer 2024-07-03T14:20:31,102 copying build/lib/galaxy/datatypes/display_applications/configs/rviewer/bed.xml -> build/bdist.linux-armv7l/wheel/galaxy/datatypes/display_applications/configs/rviewer 2024-07-03T14:20:31,104 copying build/lib/galaxy/datatypes/display_applications/configs/rviewer/vcf.xml -> build/bdist.linux-armv7l/wheel/galaxy/datatypes/display_applications/configs/rviewer 2024-07-03T14:20:31,106 creating build/bdist.linux-armv7l/wheel/galaxy/datatypes/display_applications/configs/ensembl 2024-07-03T14:20:31,107 copying build/lib/galaxy/datatypes/display_applications/configs/ensembl/ensembl_interval_as_bed.xml -> build/bdist.linux-armv7l/wheel/galaxy/datatypes/display_applications/configs/ensembl 2024-07-03T14:20:31,109 copying build/lib/galaxy/datatypes/display_applications/configs/ensembl/ensembl_gff.xml -> build/bdist.linux-armv7l/wheel/galaxy/datatypes/display_applications/configs/ensembl 2024-07-03T14:20:31,111 copying build/lib/galaxy/datatypes/display_applications/configs/ensembl/ensembl_bam.xml -> build/bdist.linux-armv7l/wheel/galaxy/datatypes/display_applications/configs/ensembl 2024-07-03T14:20:31,113 creating build/bdist.linux-armv7l/wheel/galaxy/datatypes/display_applications/configs/ucsc 2024-07-03T14:20:31,113 copying build/lib/galaxy/datatypes/display_applications/configs/ucsc/interval_as_bed.xml -> build/bdist.linux-armv7l/wheel/galaxy/datatypes/display_applications/configs/ucsc 2024-07-03T14:20:31,115 copying build/lib/galaxy/datatypes/display_applications/configs/ucsc/bam.xml -> build/bdist.linux-armv7l/wheel/galaxy/datatypes/display_applications/configs/ucsc 2024-07-03T14:20:31,117 copying build/lib/galaxy/datatypes/display_applications/configs/ucsc/bigbed.xml -> build/bdist.linux-armv7l/wheel/galaxy/datatypes/display_applications/configs/ucsc 2024-07-03T14:20:31,118 copying build/lib/galaxy/datatypes/display_applications/configs/ucsc/bigwig.xml -> build/bdist.linux-armv7l/wheel/galaxy/datatypes/display_applications/configs/ucsc 2024-07-03T14:20:31,120 copying build/lib/galaxy/datatypes/display_applications/configs/ucsc/trackhub.xml -> build/bdist.linux-armv7l/wheel/galaxy/datatypes/display_applications/configs/ucsc 2024-07-03T14:20:31,122 copying build/lib/galaxy/datatypes/display_applications/configs/ucsc/maf_customtrack.xml -> build/bdist.linux-armv7l/wheel/galaxy/datatypes/display_applications/configs/ucsc 2024-07-03T14:20:31,123 copying build/lib/galaxy/datatypes/display_applications/configs/ucsc/vcf.xml -> build/bdist.linux-armv7l/wheel/galaxy/datatypes/display_applications/configs/ucsc 2024-07-03T14:20:31,126 creating build/bdist.linux-armv7l/wheel/galaxy/datatypes/display_applications/configs/gbrowse 2024-07-03T14:20:31,127 copying build/lib/galaxy/datatypes/display_applications/configs/gbrowse/gbrowse_interval_as_bed.xml -> build/bdist.linux-armv7l/wheel/galaxy/datatypes/display_applications/configs/gbrowse 2024-07-03T14:20:31,129 copying build/lib/galaxy/datatypes/display_applications/configs/gbrowse/gbrowse_wig.xml -> build/bdist.linux-armv7l/wheel/galaxy/datatypes/display_applications/configs/gbrowse 2024-07-03T14:20:31,130 copying build/lib/galaxy/datatypes/display_applications/configs/gbrowse/gbrowse_gff.xml -> build/bdist.linux-armv7l/wheel/galaxy/datatypes/display_applications/configs/gbrowse 2024-07-03T14:20:31,133 creating build/bdist.linux-armv7l/wheel/galaxy/datatypes/display_applications/configs/iobio 2024-07-03T14:20:31,134 copying build/lib/galaxy/datatypes/display_applications/configs/iobio/bam.xml -> build/bdist.linux-armv7l/wheel/galaxy/datatypes/display_applications/configs/iobio 2024-07-03T14:20:31,135 copying build/lib/galaxy/datatypes/display_applications/configs/iobio/vcf.xml -> build/bdist.linux-armv7l/wheel/galaxy/datatypes/display_applications/configs/iobio 2024-07-03T14:20:31,138 creating build/bdist.linux-armv7l/wheel/galaxy/datatypes/display_applications/configs/intermine 2024-07-03T14:20:31,138 copying build/lib/galaxy/datatypes/display_applications/configs/intermine/intermine_simple.xml -> build/bdist.linux-armv7l/wheel/galaxy/datatypes/display_applications/configs/intermine 2024-07-03T14:20:31,141 creating build/bdist.linux-armv7l/wheel/galaxy/datatypes/display_applications/configs/igb 2024-07-03T14:20:31,142 copying build/lib/galaxy/datatypes/display_applications/configs/igb/bed.xml -> build/bdist.linux-armv7l/wheel/galaxy/datatypes/display_applications/configs/igb 2024-07-03T14:20:31,144 copying build/lib/galaxy/datatypes/display_applications/configs/igb/gtf.xml -> build/bdist.linux-armv7l/wheel/galaxy/datatypes/display_applications/configs/igb 2024-07-03T14:20:31,146 copying build/lib/galaxy/datatypes/display_applications/configs/igb/bb.xml -> build/bdist.linux-armv7l/wheel/galaxy/datatypes/display_applications/configs/igb 2024-07-03T14:20:31,147 copying build/lib/galaxy/datatypes/display_applications/configs/igb/bam.xml -> build/bdist.linux-armv7l/wheel/galaxy/datatypes/display_applications/configs/igb 2024-07-03T14:20:31,149 copying build/lib/galaxy/datatypes/display_applications/configs/igb/wig.xml -> build/bdist.linux-armv7l/wheel/galaxy/datatypes/display_applications/configs/igb 2024-07-03T14:20:31,151 copying build/lib/galaxy/datatypes/display_applications/configs/igb/bedgraph.xml -> build/bdist.linux-armv7l/wheel/galaxy/datatypes/display_applications/configs/igb 2024-07-03T14:20:31,152 copying build/lib/galaxy/datatypes/display_applications/configs/igb/bigwig.xml -> build/bdist.linux-armv7l/wheel/galaxy/datatypes/display_applications/configs/igb 2024-07-03T14:20:31,154 creating build/bdist.linux-armv7l/wheel/galaxy/datatypes/display_applications/configs/qiime 2024-07-03T14:20:31,156 creating build/bdist.linux-armv7l/wheel/galaxy/datatypes/display_applications/configs/qiime/qiime2 2024-07-03T14:20:31,157 copying build/lib/galaxy/datatypes/display_applications/configs/qiime/qiime2/q2view.xml -> build/bdist.linux-armv7l/wheel/galaxy/datatypes/display_applications/configs/qiime/qiime2 2024-07-03T14:20:31,158 copying build/lib/galaxy/datatypes/display_applications/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/datatypes/display_applications 2024-07-03T14:20:31,160 copying build/lib/galaxy/datatypes/display_applications/parameters.py -> build/bdist.linux-armv7l/wheel/galaxy/datatypes/display_applications 2024-07-03T14:20:31,162 copying build/lib/galaxy/datatypes/display_applications/application.py -> build/bdist.linux-armv7l/wheel/galaxy/datatypes/display_applications 2024-07-03T14:20:31,165 copying build/lib/galaxy/datatypes/hdf5.py -> build/bdist.linux-armv7l/wheel/galaxy/datatypes 2024-07-03T14:20:31,167 copying build/lib/galaxy/datatypes/set_metadata_tool.xml -> build/bdist.linux-armv7l/wheel/galaxy/datatypes 2024-07-03T14:20:31,169 copying build/lib/galaxy/datatypes/tracks.py -> build/bdist.linux-armv7l/wheel/galaxy/datatypes 2024-07-03T14:20:31,171 copying build/lib/galaxy/datatypes/_schema.py -> build/bdist.linux-armv7l/wheel/galaxy/datatypes 2024-07-03T14:20:31,173 copying build/lib/galaxy/datatypes/sniff.py -> build/bdist.linux-armv7l/wheel/galaxy/datatypes 2024-07-03T14:20:31,176 copying build/lib/galaxy/datatypes/images.py -> build/bdist.linux-armv7l/wheel/galaxy/datatypes 2024-07-03T14:20:31,179 copying build/lib/galaxy/datatypes/mothur.py -> build/bdist.linux-armv7l/wheel/galaxy/datatypes 2024-07-03T14:20:31,183 copying build/lib/galaxy/datatypes/chrominfo.py -> build/bdist.linux-armv7l/wheel/galaxy/datatypes 2024-07-03T14:20:31,185 copying build/lib/galaxy/datatypes/interval.py -> build/bdist.linux-armv7l/wheel/galaxy/datatypes 2024-07-03T14:20:31,189 copying build/lib/galaxy/datatypes/genetics.py -> build/bdist.linux-armv7l/wheel/galaxy/datatypes 2024-07-03T14:20:31,193 copying build/lib/galaxy/datatypes/checkers.py -> build/bdist.linux-armv7l/wheel/galaxy/datatypes 2024-07-03T14:20:31,195 copying build/lib/galaxy/datatypes/microarrays.py -> build/bdist.linux-armv7l/wheel/galaxy/datatypes 2024-07-03T14:20:31,198 copying build/lib/galaxy/datatypes/molecules.py -> build/bdist.linux-armv7l/wheel/galaxy/datatypes 2024-07-03T14:20:31,202 creating build/bdist.linux-armv7l/wheel/galaxy/datatypes/util 2024-07-03T14:20:31,203 copying build/lib/galaxy/datatypes/util/gff_util.py -> build/bdist.linux-armv7l/wheel/galaxy/datatypes/util 2024-07-03T14:20:31,207 copying build/lib/galaxy/datatypes/util/generic_util.py -> build/bdist.linux-armv7l/wheel/galaxy/datatypes/util 2024-07-03T14:20:31,209 copying build/lib/galaxy/datatypes/util/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/datatypes/util 2024-07-03T14:20:31,212 copying build/lib/galaxy/datatypes/util/maf_utilities.py -> build/bdist.linux-armv7l/wheel/galaxy/datatypes/util 2024-07-03T14:20:31,215 copying build/lib/galaxy/datatypes/qiime2.py -> build/bdist.linux-armv7l/wheel/galaxy/datatypes 2024-07-03T14:20:31,219 copying build/lib/galaxy/datatypes/constructive_solid_geometry.py -> build/bdist.linux-armv7l/wheel/galaxy/datatypes 2024-07-03T14:20:31,223 creating build/bdist.linux-armv7l/wheel/galaxy/quota 2024-07-03T14:20:31,225 copying build/lib/galaxy/quota/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/quota 2024-07-03T14:20:31,228 copying build/lib/galaxy/quota/_schema.py -> build/bdist.linux-armv7l/wheel/galaxy/quota 2024-07-03T14:20:31,231 copying build/lib/galaxy/py.typed -> build/bdist.linux-armv7l/wheel/galaxy 2024-07-03T14:20:31,233 copying build/lib/galaxy/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy 2024-07-03T14:20:31,236 creating build/bdist.linux-armv7l/wheel/galaxy/security 2024-07-03T14:20:31,237 copying build/lib/galaxy/security/validate_user_input.py -> build/bdist.linux-armv7l/wheel/galaxy/security 2024-07-03T14:20:31,240 copying build/lib/galaxy/security/idencoding.py -> build/bdist.linux-armv7l/wheel/galaxy/security 2024-07-03T14:20:31,243 copying build/lib/galaxy/security/vault.py -> build/bdist.linux-armv7l/wheel/galaxy/security 2024-07-03T14:20:31,246 copying build/lib/galaxy/security/ssh_util.py -> build/bdist.linux-armv7l/wheel/galaxy/security 2024-07-03T14:20:31,248 copying build/lib/galaxy/security/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/security 2024-07-03T14:20:31,251 copying build/lib/galaxy/security/passwords.py -> build/bdist.linux-armv7l/wheel/galaxy/security 2024-07-03T14:20:31,254 copying build/lib/galaxy/security/object_wrapper.py -> build/bdist.linux-armv7l/wheel/galaxy/security 2024-07-03T14:20:31,257 running install_egg_info 2024-07-03T14:20:31,274 Copying galaxy_data.egg-info to build/bdist.linux-armv7l/wheel/galaxy_data-24.1.1-py3.11.egg-info 2024-07-03T14:20:31,289 running install_scripts 2024-07-03T14:20:31,325 creating build/bdist.linux-armv7l/wheel/galaxy_data-24.1.1.dist-info/WHEEL 2024-07-03T14:20:31,328 creating '/tmp/pip-wheel-8x239_m4/.tmp-_l2d__6i/galaxy_data-24.1.1-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2024-07-03T14:20:31,331 adding 'galaxy/__init__.py' 2024-07-03T14:20:31,333 adding 'galaxy/py.typed' 2024-07-03T14:20:31,337 adding 'galaxy/datatypes/__init__.py' 2024-07-03T14:20:31,339 adding 'galaxy/datatypes/_schema.py' 2024-07-03T14:20:31,342 adding 'galaxy/datatypes/annotation.py' 2024-07-03T14:20:31,344 adding 'galaxy/datatypes/anvio.py' 2024-07-03T14:20:31,347 adding 'galaxy/datatypes/assembly.py' 2024-07-03T14:20:31,368 adding 'galaxy/datatypes/binary.py' 2024-07-03T14:20:31,374 adding 'galaxy/datatypes/blast.py' 2024-07-03T14:20:31,376 adding 'galaxy/datatypes/chain.py' 2024-07-03T14:20:31,378 adding 'galaxy/datatypes/checkers.py' 2024-07-03T14:20:31,379 adding 'galaxy/datatypes/chrominfo.py' 2024-07-03T14:20:31,383 adding 'galaxy/datatypes/constructive_solid_geometry.py' 2024-07-03T14:20:31,385 adding 'galaxy/datatypes/coverage.py' 2024-07-03T14:20:31,392 adding 'galaxy/datatypes/data.py' 2024-07-03T14:20:31,394 adding 'galaxy/datatypes/flow.py' 2024-07-03T14:20:31,399 adding 'galaxy/datatypes/genetics.py' 2024-07-03T14:20:31,401 adding 'galaxy/datatypes/gis.py' 2024-07-03T14:20:31,404 adding 'galaxy/datatypes/goldenpath.py' 2024-07-03T14:20:31,406 adding 'galaxy/datatypes/graph.py' 2024-07-03T14:20:31,408 adding 'galaxy/datatypes/hdf5.py' 2024-07-03T14:20:31,410 adding 'galaxy/datatypes/images.py' 2024-07-03T14:20:31,418 adding 'galaxy/datatypes/interval.py' 2024-07-03T14:20:31,421 adding 'galaxy/datatypes/isa.py' 2024-07-03T14:20:31,424 adding 'galaxy/datatypes/larch.py' 2024-07-03T14:20:31,426 adding 'galaxy/datatypes/media.py' 2024-07-03T14:20:31,427 adding 'galaxy/datatypes/metacyto.py' 2024-07-03T14:20:31,429 adding 'galaxy/datatypes/metadata.py' 2024-07-03T14:20:31,431 adding 'galaxy/datatypes/microarrays.py' 2024-07-03T14:20:31,436 adding 'galaxy/datatypes/molecules.py' 2024-07-03T14:20:31,440 adding 'galaxy/datatypes/mothur.py' 2024-07-03T14:20:31,443 adding 'galaxy/datatypes/msa.py' 2024-07-03T14:20:31,445 adding 'galaxy/datatypes/neo4j.py' 2024-07-03T14:20:31,446 adding 'galaxy/datatypes/ngsindex.py' 2024-07-03T14:20:31,448 adding 'galaxy/datatypes/phylip.py' 2024-07-03T14:20:31,450 adding 'galaxy/datatypes/plant_tribes.py' 2024-07-03T14:20:31,454 adding 'galaxy/datatypes/proteomics.py' 2024-07-03T14:20:31,456 adding 'galaxy/datatypes/protocols.py' 2024-07-03T14:20:31,458 adding 'galaxy/datatypes/qiime2.py' 2024-07-03T14:20:31,460 adding 'galaxy/datatypes/qualityscore.py' 2024-07-03T14:20:31,466 adding 'galaxy/datatypes/registry.py' 2024-07-03T14:20:31,472 adding 'galaxy/datatypes/sequence.py' 2024-07-03T14:20:31,474 adding 'galaxy/datatypes/set_metadata_tool.xml' 2024-07-03T14:20:31,479 adding 'galaxy/datatypes/sniff.py' 2024-07-03T14:20:31,481 adding 'galaxy/datatypes/spaln.py' 2024-07-03T14:20:31,483 adding 'galaxy/datatypes/speech.py' 2024-07-03T14:20:31,491 adding 'galaxy/datatypes/tabular.py' 2024-07-03T14:20:31,497 adding 'galaxy/datatypes/text.py' 2024-07-03T14:20:31,499 adding 'galaxy/datatypes/tracks.py' 2024-07-03T14:20:31,501 adding 'galaxy/datatypes/triples.py' 2024-07-03T14:20:31,502 adding 'galaxy/datatypes/upload_util.py' 2024-07-03T14:20:31,504 adding 'galaxy/datatypes/xml.py' 2024-07-03T14:20:31,508 adding 'galaxy/datatypes/converters/__init__.py' 2024-07-03T14:20:31,509 adding 'galaxy/datatypes/converters/bam_to_bai.xml' 2024-07-03T14:20:31,510 adding 'galaxy/datatypes/converters/bam_to_bigwig_converter.xml' 2024-07-03T14:20:31,512 adding 'galaxy/datatypes/converters/bcf_bcf_uncompressed_converter.xml' 2024-07-03T14:20:31,513 adding 'galaxy/datatypes/converters/bed_gff_or_vcf_to_bigwig_converter.xml' 2024-07-03T14:20:31,514 adding 'galaxy/datatypes/converters/bed_to_fli_converter.xml' 2024-07-03T14:20:31,515 adding 'galaxy/datatypes/converters/bed_to_gff_converter.py' 2024-07-03T14:20:31,517 adding 'galaxy/datatypes/converters/bed_to_gff_converter.xml' 2024-07-03T14:20:31,518 adding 'galaxy/datatypes/converters/bed_to_interval_index_converter.xml' 2024-07-03T14:20:31,519 adding 'galaxy/datatypes/converters/bedgraph_to_bigwig_converter.xml' 2024-07-03T14:20:31,520 adding 'galaxy/datatypes/converters/bigwig_to_wig_converter.xml' 2024-07-03T14:20:31,522 adding 'galaxy/datatypes/converters/biom.xml' 2024-07-03T14:20:31,523 adding 'galaxy/datatypes/converters/bz2_to_uncompressed.xml' 2024-07-03T14:20:31,524 adding 'galaxy/datatypes/converters/cml_to_smi_converter.xml' 2024-07-03T14:20:31,525 adding 'galaxy/datatypes/converters/cram_to_bam_converter.xml' 2024-07-03T14:20:31,527 adding 'galaxy/datatypes/converters/csv_to_tabular.xml' 2024-07-03T14:20:31,528 adding 'galaxy/datatypes/converters/fasta_to_2bit.xml' 2024-07-03T14:20:31,529 adding 'galaxy/datatypes/converters/fasta_to_bowtie_base_index_converter.xml' 2024-07-03T14:20:31,530 adding 'galaxy/datatypes/converters/fasta_to_bowtie_color_index_converter.xml' 2024-07-03T14:20:31,532 adding 'galaxy/datatypes/converters/fasta_to_fai.xml' 2024-07-03T14:20:31,533 adding 'galaxy/datatypes/converters/fasta_to_len.py' 2024-07-03T14:20:31,534 adding 'galaxy/datatypes/converters/fasta_to_len.xml' 2024-07-03T14:20:31,535 adding 'galaxy/datatypes/converters/fasta_to_tabular_converter.py' 2024-07-03T14:20:31,537 adding 'galaxy/datatypes/converters/fasta_to_tabular_converter.xml' 2024-07-03T14:20:31,538 adding 'galaxy/datatypes/converters/fastq_to_fqtoc.py' 2024-07-03T14:20:31,539 adding 'galaxy/datatypes/converters/fastq_to_fqtoc.xml' 2024-07-03T14:20:31,540 adding 'galaxy/datatypes/converters/fastqsolexa_to_fasta_converter.py' 2024-07-03T14:20:31,542 adding 'galaxy/datatypes/converters/fastqsolexa_to_fasta_converter.xml' 2024-07-03T14:20:31,543 adding 'galaxy/datatypes/converters/fastqsolexa_to_qual_converter.py' 2024-07-03T14:20:31,544 adding 'galaxy/datatypes/converters/fastqsolexa_to_qual_converter.xml' 2024-07-03T14:20:31,546 adding 'galaxy/datatypes/converters/gff_to_bed_converter.py' 2024-07-03T14:20:31,547 adding 'galaxy/datatypes/converters/gff_to_bed_converter.xml' 2024-07-03T14:20:31,548 adding 'galaxy/datatypes/converters/gff_to_fli_converter.xml' 2024-07-03T14:20:31,549 adding 'galaxy/datatypes/converters/gff_to_interval_index_converter.py' 2024-07-03T14:20:31,551 adding 'galaxy/datatypes/converters/gff_to_interval_index_converter.xml' 2024-07-03T14:20:31,552 adding 'galaxy/datatypes/converters/gro_to_pdb.xml' 2024-07-03T14:20:31,553 adding 'galaxy/datatypes/converters/gz_to_uncompressed.xml' 2024-07-03T14:20:31,554 adding 'galaxy/datatypes/converters/inchi_to_mol_converter.xml' 2024-07-03T14:20:31,555 adding 'galaxy/datatypes/converters/interval_to_bed12_converter.xml' 2024-07-03T14:20:31,557 adding 'galaxy/datatypes/converters/interval_to_bed6_converter.xml' 2024-07-03T14:20:31,558 adding 'galaxy/datatypes/converters/interval_to_bed_converter.py' 2024-07-03T14:20:31,559 adding 'galaxy/datatypes/converters/interval_to_bed_converter.xml' 2024-07-03T14:20:31,561 adding 'galaxy/datatypes/converters/interval_to_bedstrict_converter.py' 2024-07-03T14:20:31,562 adding 'galaxy/datatypes/converters/interval_to_bedstrict_converter.xml' 2024-07-03T14:20:31,563 adding 'galaxy/datatypes/converters/interval_to_bgzip_converter.xml' 2024-07-03T14:20:31,564 adding 'galaxy/datatypes/converters/interval_to_bigwig_converter.xml' 2024-07-03T14:20:31,566 adding 'galaxy/datatypes/converters/interval_to_fli.py' 2024-07-03T14:20:31,567 adding 'galaxy/datatypes/converters/interval_to_interval_index_converter.py' 2024-07-03T14:20:31,568 adding 'galaxy/datatypes/converters/interval_to_interval_index_converter.xml' 2024-07-03T14:20:31,569 adding 'galaxy/datatypes/converters/interval_to_tabix_converter.xml' 2024-07-03T14:20:31,571 adding 'galaxy/datatypes/converters/len_to_linecount.xml' 2024-07-03T14:20:31,572 adding 'galaxy/datatypes/converters/lped_to_fped_converter.py' 2024-07-03T14:20:31,573 adding 'galaxy/datatypes/converters/lped_to_fped_converter.xml' 2024-07-03T14:20:31,575 adding 'galaxy/datatypes/converters/lped_to_pbed_converter.py' 2024-07-03T14:20:31,576 adding 'galaxy/datatypes/converters/lped_to_pbed_converter.xml' 2024-07-03T14:20:31,577 adding 'galaxy/datatypes/converters/maf_to_fasta_converter.py' 2024-07-03T14:20:31,579 adding 'galaxy/datatypes/converters/maf_to_fasta_converter.xml' 2024-07-03T14:20:31,580 adding 'galaxy/datatypes/converters/maf_to_interval_converter.py' 2024-07-03T14:20:31,581 adding 'galaxy/datatypes/converters/maf_to_interval_converter.xml' 2024-07-03T14:20:31,582 adding 'galaxy/datatypes/converters/mdconvert.xml' 2024-07-03T14:20:31,584 adding 'galaxy/datatypes/converters/mol2_to_mol_converter.xml' 2024-07-03T14:20:31,585 adding 'galaxy/datatypes/converters/molecules_converter.xml' 2024-07-03T14:20:31,587 adding 'galaxy/datatypes/converters/neostorezip_to_neostore_converter.xml' 2024-07-03T14:20:31,588 adding 'galaxy/datatypes/converters/parquet_to_csv_converter.py' 2024-07-03T14:20:31,589 adding 'galaxy/datatypes/converters/parquet_to_csv_converter.xml' 2024-07-03T14:20:31,591 adding 'galaxy/datatypes/converters/pbed_ldreduced_converter.py' 2024-07-03T14:20:31,592 adding 'galaxy/datatypes/converters/pbed_ldreduced_converter.xml' 2024-07-03T14:20:31,593 adding 'galaxy/datatypes/converters/pbed_to_lped_converter.py' 2024-07-03T14:20:31,595 adding 'galaxy/datatypes/converters/pbed_to_lped_converter.xml' 2024-07-03T14:20:31,596 adding 'galaxy/datatypes/converters/pdb_to_gro.xml' 2024-07-03T14:20:31,597 adding 'galaxy/datatypes/converters/picard_interval_list_to_bed6_converter.py' 2024-07-03T14:20:31,599 adding 'galaxy/datatypes/converters/picard_interval_list_to_bed6_converter.xml' 2024-07-03T14:20:31,600 adding 'galaxy/datatypes/converters/pileup_to_interval_index_converter.py' 2024-07-03T14:20:31,601 adding 'galaxy/datatypes/converters/pileup_to_interval_index_converter.xml' 2024-07-03T14:20:31,602 adding 'galaxy/datatypes/converters/ref_to_seq_taxonomy_converter.py' 2024-07-03T14:20:31,603 adding 'galaxy/datatypes/converters/ref_to_seq_taxonomy_converter.xml' 2024-07-03T14:20:31,605 adding 'galaxy/datatypes/converters/sam_to_bigwig_converter.xml' 2024-07-03T14:20:31,606 adding 'galaxy/datatypes/converters/sam_to_unsorted_bam.xml' 2024-07-03T14:20:31,607 adding 'galaxy/datatypes/converters/smi_to_mol_converter.xml' 2024-07-03T14:20:31,608 adding 'galaxy/datatypes/converters/smi_to_smi_converter.xml' 2024-07-03T14:20:31,609 adding 'galaxy/datatypes/converters/tabular_csv.py' 2024-07-03T14:20:31,611 adding 'galaxy/datatypes/converters/tabular_to_csv.xml' 2024-07-03T14:20:31,612 adding 'galaxy/datatypes/converters/tabular_to_dbnsfp.xml' 2024-07-03T14:20:31,613 adding 'galaxy/datatypes/converters/tar_to_directory.xml' 2024-07-03T14:20:31,614 adding 'galaxy/datatypes/converters/to_coordinate_sorted_bam.xml' 2024-07-03T14:20:31,615 adding 'galaxy/datatypes/converters/to_qname_sorted_bam.xml' 2024-07-03T14:20:31,617 adding 'galaxy/datatypes/converters/uncompressed_to_gz.xml' 2024-07-03T14:20:31,618 adding 'galaxy/datatypes/converters/vcf_bgzip_to_tabix_converter.xml' 2024-07-03T14:20:31,619 adding 'galaxy/datatypes/converters/vcf_to_interval_index_converter.py' 2024-07-03T14:20:31,620 adding 'galaxy/datatypes/converters/vcf_to_interval_index_converter.xml' 2024-07-03T14:20:31,622 adding 'galaxy/datatypes/converters/vcf_to_vcf_bgzip_converter.xml' 2024-07-03T14:20:31,623 adding 'galaxy/datatypes/converters/wig_to_bigwig_converter.xml' 2024-07-03T14:20:31,624 adding 'galaxy/datatypes/converters/wiggle_to_simple_converter.py' 2024-07-03T14:20:31,625 adding 'galaxy/datatypes/converters/wiggle_to_simple_converter.xml' 2024-07-03T14:20:31,627 adding 'galaxy/datatypes/dataproviders/__init__.py' 2024-07-03T14:20:31,629 adding 'galaxy/datatypes/dataproviders/base.py' 2024-07-03T14:20:31,630 adding 'galaxy/datatypes/dataproviders/chunk.py' 2024-07-03T14:20:31,632 adding 'galaxy/datatypes/dataproviders/column.py' 2024-07-03T14:20:31,636 adding 'galaxy/datatypes/dataproviders/dataset.py' 2024-07-03T14:20:31,638 adding 'galaxy/datatypes/dataproviders/decorators.py' 2024-07-03T14:20:31,639 adding 'galaxy/datatypes/dataproviders/exceptions.py' 2024-07-03T14:20:31,641 adding 'galaxy/datatypes/dataproviders/external.py' 2024-07-03T14:20:31,642 adding 'galaxy/datatypes/dataproviders/hierarchy.py' 2024-07-03T14:20:31,644 adding 'galaxy/datatypes/dataproviders/line.py' 2024-07-03T14:20:31,646 adding 'galaxy/datatypes/display_applications/__init__.py' 2024-07-03T14:20:31,648 adding 'galaxy/datatypes/display_applications/application.py' 2024-07-03T14:20:31,650 adding 'galaxy/datatypes/display_applications/parameters.py' 2024-07-03T14:20:31,651 adding 'galaxy/datatypes/display_applications/util.py' 2024-07-03T14:20:31,654 adding 'galaxy/datatypes/display_applications/configs/biom/biom_simple.xml' 2024-07-03T14:20:31,655 adding 'galaxy/datatypes/display_applications/configs/ensembl/ensembl_bam.xml' 2024-07-03T14:20:31,657 adding 'galaxy/datatypes/display_applications/configs/ensembl/ensembl_gff.xml' 2024-07-03T14:20:31,658 adding 'galaxy/datatypes/display_applications/configs/ensembl/ensembl_interval_as_bed.xml' 2024-07-03T14:20:31,660 adding 'galaxy/datatypes/display_applications/configs/gbrowse/gbrowse_gff.xml' 2024-07-03T14:20:31,661 adding 'galaxy/datatypes/display_applications/configs/gbrowse/gbrowse_interval_as_bed.xml' 2024-07-03T14:20:31,663 adding 'galaxy/datatypes/display_applications/configs/gbrowse/gbrowse_wig.xml' 2024-07-03T14:20:31,664 adding 'galaxy/datatypes/display_applications/configs/icn3d/icn3d_simple.xml' 2024-07-03T14:20:31,666 adding 'galaxy/datatypes/display_applications/configs/igb/bam.xml' 2024-07-03T14:20:31,667 adding 'galaxy/datatypes/display_applications/configs/igb/bb.xml' 2024-07-03T14:20:31,669 adding 'galaxy/datatypes/display_applications/configs/igb/bed.xml' 2024-07-03T14:20:31,670 adding 'galaxy/datatypes/display_applications/configs/igb/bedgraph.xml' 2024-07-03T14:20:31,671 adding 'galaxy/datatypes/display_applications/configs/igb/bigwig.xml' 2024-07-03T14:20:31,672 adding 'galaxy/datatypes/display_applications/configs/igb/gtf.xml' 2024-07-03T14:20:31,674 adding 'galaxy/datatypes/display_applications/configs/igb/wig.xml' 2024-07-03T14:20:31,676 adding 'galaxy/datatypes/display_applications/configs/igv/bam.xml' 2024-07-03T14:20:31,677 adding 'galaxy/datatypes/display_applications/configs/igv/bigwig.xml' 2024-07-03T14:20:31,678 adding 'galaxy/datatypes/display_applications/configs/igv/genbank.xml' 2024-07-03T14:20:31,680 adding 'galaxy/datatypes/display_applications/configs/igv/genome_fasta.xml' 2024-07-03T14:20:31,681 adding 'galaxy/datatypes/display_applications/configs/igv/gff.xml' 2024-07-03T14:20:31,683 adding 'galaxy/datatypes/display_applications/configs/igv/interval_as_bed.xml' 2024-07-03T14:20:31,684 adding 'galaxy/datatypes/display_applications/configs/igv/vcf.xml' 2024-07-03T14:20:31,686 adding 'galaxy/datatypes/display_applications/configs/image/avivator.xml' 2024-07-03T14:20:31,687 adding 'galaxy/datatypes/display_applications/configs/intermine/intermine_simple.xml' 2024-07-03T14:20:31,689 adding 'galaxy/datatypes/display_applications/configs/iobio/bam.xml' 2024-07-03T14:20:31,690 adding 'galaxy/datatypes/display_applications/configs/iobio/vcf.xml' 2024-07-03T14:20:31,692 adding 'galaxy/datatypes/display_applications/configs/minerva/tabular.xml' 2024-07-03T14:20:31,694 adding 'galaxy/datatypes/display_applications/configs/qiime/qiime2/q2view.xml' 2024-07-03T14:20:31,695 adding 'galaxy/datatypes/display_applications/configs/rviewer/bed.xml' 2024-07-03T14:20:31,696 adding 'galaxy/datatypes/display_applications/configs/rviewer/vcf.xml' 2024-07-03T14:20:31,698 adding 'galaxy/datatypes/display_applications/configs/ucsc/bam.xml' 2024-07-03T14:20:31,700 adding 'galaxy/datatypes/display_applications/configs/ucsc/bigbed.xml' 2024-07-03T14:20:31,701 adding 'galaxy/datatypes/display_applications/configs/ucsc/bigwig.xml' 2024-07-03T14:20:31,702 adding 'galaxy/datatypes/display_applications/configs/ucsc/interval_as_bed.xml' 2024-07-03T14:20:31,703 adding 'galaxy/datatypes/display_applications/configs/ucsc/maf_customtrack.xml' 2024-07-03T14:20:31,704 adding 'galaxy/datatypes/display_applications/configs/ucsc/trackhub.xml' 2024-07-03T14:20:31,706 adding 'galaxy/datatypes/display_applications/configs/ucsc/vcf.xml' 2024-07-03T14:20:31,708 adding 'galaxy/datatypes/display_applications/xsd/geda.xsd' 2024-07-03T14:20:31,710 adding 'galaxy/datatypes/util/__init__.py' 2024-07-03T14:20:31,711 adding 'galaxy/datatypes/util/generic_util.py' 2024-07-03T14:20:31,713 adding 'galaxy/datatypes/util/gff_util.py' 2024-07-03T14:20:31,717 adding 'galaxy/datatypes/util/maf_utilities.py' 2024-07-03T14:20:31,767 adding 'galaxy/model/__init__.py' 2024-07-03T14:20:31,772 adding 'galaxy/model/base.py' 2024-07-03T14:20:31,774 adding 'galaxy/model/custom_types.py' 2024-07-03T14:20:31,776 adding 'galaxy/model/database_heartbeat.py' 2024-07-03T14:20:31,777 adding 'galaxy/model/database_object_names.py' 2024-07-03T14:20:31,779 adding 'galaxy/model/database_utils.py' 2024-07-03T14:20:31,781 adding 'galaxy/model/deferred.py' 2024-07-03T14:20:31,782 adding 'galaxy/model/index_filter_util.py' 2024-07-03T14:20:31,784 adding 'galaxy/model/item_attrs.py' 2024-07-03T14:20:31,786 adding 'galaxy/model/mapping.py' 2024-07-03T14:20:31,789 adding 'galaxy/model/metadata.py' 2024-07-03T14:20:31,791 adding 'galaxy/model/none_like.py' 2024-07-03T14:20:31,792 adding 'galaxy/model/scoped_session.py' 2024-07-03T14:20:31,801 adding 'galaxy/model/security.py' 2024-07-03T14:20:31,805 adding 'galaxy/model/tags.py' 2024-07-03T14:20:31,807 adding 'galaxy/model/dataset_collections/__init__.py' 2024-07-03T14:20:31,808 adding 'galaxy/model/dataset_collections/builder.py' 2024-07-03T14:20:31,810 adding 'galaxy/model/dataset_collections/matching.py' 2024-07-03T14:20:31,811 adding 'galaxy/model/dataset_collections/registry.py' 2024-07-03T14:20:31,813 adding 'galaxy/model/dataset_collections/structure.py' 2024-07-03T14:20:31,814 adding 'galaxy/model/dataset_collections/subcollections.py' 2024-07-03T14:20:31,816 adding 'galaxy/model/dataset_collections/type_description.py' 2024-07-03T14:20:31,817 adding 'galaxy/model/dataset_collections/types/__init__.py' 2024-07-03T14:20:31,818 adding 'galaxy/model/dataset_collections/types/list.py' 2024-07-03T14:20:31,819 adding 'galaxy/model/dataset_collections/types/paired.py' 2024-07-03T14:20:31,821 adding 'galaxy/model/migrations/README.md' 2024-07-03T14:20:31,823 adding 'galaxy/model/migrations/__init__.py' 2024-07-03T14:20:31,824 adding 'galaxy/model/migrations/alembic.ini' 2024-07-03T14:20:31,826 adding 'galaxy/model/migrations/base.py' 2024-07-03T14:20:31,828 adding 'galaxy/model/migrations/dbscript.py' 2024-07-03T14:20:31,829 adding 'galaxy/model/migrations/exceptions.py' 2024-07-03T14:20:31,831 adding 'galaxy/model/migrations/scripts.py' 2024-07-03T14:20:31,833 adding 'galaxy/model/migrations/util.py' 2024-07-03T14:20:31,835 adding 'galaxy/model/migrations/alembic/env.py' 2024-07-03T14:20:31,836 adding 'galaxy/model/migrations/alembic/script.py.mako' 2024-07-03T14:20:31,839 adding 'galaxy/model/migrations/alembic/versions_gxy/186d4835587b_drop_job_state_history_update_time_.py' 2024-07-03T14:20:31,840 adding 'galaxy/model/migrations/alembic/versions_gxy/2d749563e1fe_add_notification_system_tables.py' 2024-07-03T14:20:31,841 adding 'galaxy/model/migrations/alembic/versions_gxy/2dc3386d091f_add_indexes_for_workflow_comment_.py' 2024-07-03T14:20:31,843 adding 'galaxy/model/migrations/alembic/versions_gxy/303a5583a030_add_dispatched_column_to_notifications.py' 2024-07-03T14:20:31,844 adding 'galaxy/model/migrations/alembic/versions_gxy/3100452fa030_add_workflow_invocation_message_table.py' 2024-07-03T14:20:31,845 adding 'galaxy/model/migrations/alembic/versions_gxy/3356bc2ecfc4_drop_view.py' 2024-07-03T14:20:31,847 adding 'galaxy/model/migrations/alembic/versions_gxy/3a2914d703ca_add_index_wf_r_s_s__workflow_invocation_.py' 2024-07-03T14:20:31,848 adding 'galaxy/model/migrations/alembic/versions_gxy/460d0ecd1dd8_.py' 2024-07-03T14:20:31,849 adding 'galaxy/model/migrations/alembic/versions_gxy/518c8438a91b_add_when_expression_column.py' 2024-07-03T14:20:31,850 adding 'galaxy/model/migrations/alembic/versions_gxy/55f02fd8ab6c_add_index_on_hda_extension.py' 2024-07-03T14:20:31,851 adding 'galaxy/model/migrations/alembic/versions_gxy/5924fbf10430_add_galaxy_url_column_to_notifications.py' 2024-07-03T14:20:31,853 adding 'galaxy/model/migrations/alembic/versions_gxy/59e024ceaca1_add_export_association_table.py' 2024-07-03T14:20:31,854 adding 'galaxy/model/migrations/alembic/versions_gxy/6a67bf27e6a6_deferred_data_tables.py' 2024-07-03T14:20:31,855 adding 'galaxy/model/migrations/alembic/versions_gxy/8a19186a6ee7_add_columns_to_interactivetool_entry_point.py' 2024-07-03T14:20:31,856 adding 'galaxy/model/migrations/alembic/versions_gxy/92fb564c7095_.py' 2024-07-03T14:20:31,858 adding 'galaxy/model/migrations/alembic/versions_gxy/9540a051226e_preferred_object_store_ids.py' 2024-07-03T14:20:31,859 adding 'galaxy/model/migrations/alembic/versions_gxy/987ce9839ecb_create_celery_user_rate_limit_table.py' 2024-07-03T14:20:31,860 adding 'galaxy/model/migrations/alembic/versions_gxy/b182f655505f_add_workflow_source_metadata_column.py' 2024-07-03T14:20:31,862 adding 'galaxy/model/migrations/alembic/versions_gxy/b855b714e8b8_make_api_keys_deleted_non_nullable.py' 2024-07-03T14:20:31,863 adding 'galaxy/model/migrations/alembic/versions_gxy/c14a3c93d66a_add_user_defined_object_stores.py' 2024-07-03T14:20:31,865 adding 'galaxy/model/migrations/alembic/versions_gxy/c14a3c93d66b_add_user_defined_file_sources.py' 2024-07-03T14:20:31,866 adding 'galaxy/model/migrations/alembic/versions_gxy/c39f1de47a04_add_skipped_state_to_collection_job_.py' 2024-07-03T14:20:31,868 adding 'galaxy/model/migrations/alembic/versions_gxy/c63848676caf_update_username_column_schema_and_data.py' 2024-07-03T14:20:31,869 adding 'galaxy/model/migrations/alembic/versions_gxy/caa7742f7bca_add_index_wf_r_i_p__workflow_invocation_.py' 2024-07-03T14:20:31,870 adding 'galaxy/model/migrations/alembic/versions_gxy/d0583094c8cd_add_quota_source_labels.py' 2024-07-03T14:20:31,872 adding 'galaxy/model/migrations/alembic/versions_gxy/ddbdbc40bdc1_add_workflow_comment_table.py' 2024-07-03T14:20:31,873 adding 'galaxy/model/migrations/alembic/versions_gxy/e0561d5fc8c7_add_archived_columns_to_history.py' 2024-07-03T14:20:31,874 adding 'galaxy/model/migrations/alembic/versions_gxy/e0e3bb173ee6_add_column_deleted_to_api_keys.py' 2024-07-03T14:20:31,875 adding 'galaxy/model/migrations/alembic/versions_gxy/e7b6dcb09efd_create_gxy_branch.py' 2024-07-03T14:20:31,876 adding 'galaxy/model/migrations/alembic/versions_gxy/e93c5d0b47a9_alter_column_external_user_id.py' 2024-07-03T14:20:31,878 adding 'galaxy/model/migrations/alembic/versions_tsi/d4a650f47a3c_create_tsi_branch.py' 2024-07-03T14:20:31,879 adding 'galaxy/model/orm/__init__.py' 2024-07-03T14:20:31,881 adding 'galaxy/model/orm/engine_factory.py' 2024-07-03T14:20:31,882 adding 'galaxy/model/orm/now.py' 2024-07-03T14:20:31,884 adding 'galaxy/model/orm/scripts.py' 2024-07-03T14:20:31,885 adding 'galaxy/model/orm/util.py' 2024-07-03T14:20:31,887 adding 'galaxy/model/scripts/__init__.py' 2024-07-03T14:20:31,888 adding 'galaxy/model/scripts/history_table_pruner.py' 2024-07-03T14:20:31,889 adding 'galaxy/model/scripts/prune_history_table.py' 2024-07-03T14:20:31,904 adding 'galaxy/model/store/__init__.py' 2024-07-03T14:20:31,906 adding 'galaxy/model/store/_bco_convert_utils.py' 2024-07-03T14:20:31,908 adding 'galaxy/model/store/build_objects.py' 2024-07-03T14:20:31,912 adding 'galaxy/model/store/discover.py' 2024-07-03T14:20:31,914 adding 'galaxy/model/store/load_objects.py' 2024-07-03T14:20:31,916 adding 'galaxy/model/store/ro_crate_utils.py' 2024-07-03T14:20:31,920 adding 'galaxy/model/tool_shed_install/__init__.py' 2024-07-03T14:20:31,921 adding 'galaxy/model/tool_shed_install/mapping.py' 2024-07-03T14:20:31,923 adding 'galaxy/model/triggers/__init__.py' 2024-07-03T14:20:31,924 adding 'galaxy/model/triggers/history_update_time_field.py' 2024-07-03T14:20:31,926 adding 'galaxy/model/triggers/update_audit_table.py' 2024-07-03T14:20:31,927 adding 'galaxy/model/triggers/utils.py' 2024-07-03T14:20:31,928 adding 'galaxy/model/unittest_utils/__init__.py' 2024-07-03T14:20:31,929 adding 'galaxy/model/unittest_utils/beaker_testing_utils.py' 2024-07-03T14:20:31,931 adding 'galaxy/model/unittest_utils/data_app.py' 2024-07-03T14:20:31,932 adding 'galaxy/model/unittest_utils/migration_scripts_testing_utils.py' 2024-07-03T14:20:31,934 adding 'galaxy/model/unittest_utils/model_testing_utils.py' 2024-07-03T14:20:31,936 adding 'galaxy/model/unittest_utils/store_fixtures.py' 2024-07-03T14:20:31,939 adding 'galaxy/quota/__init__.py' 2024-07-03T14:20:31,940 adding 'galaxy/quota/_schema.py' 2024-07-03T14:20:31,942 adding 'galaxy/security/__init__.py' 2024-07-03T14:20:31,944 adding 'galaxy/security/idencoding.py' 2024-07-03T14:20:31,946 adding 'galaxy/security/object_wrapper.py' 2024-07-03T14:20:31,948 adding 'galaxy/security/passwords.py' 2024-07-03T14:20:31,949 adding 'galaxy/security/ssh_util.py' 2024-07-03T14:20:31,950 adding 'galaxy/security/validate_user_input.py' 2024-07-03T14:20:31,952 adding 'galaxy/security/vault.py' 2024-07-03T14:20:31,955 adding 'galaxy_data-24.1.1.dist-info/LICENSE' 2024-07-03T14:20:31,959 adding 'galaxy_data-24.1.1.dist-info/METADATA' 2024-07-03T14:20:31,961 adding 'galaxy_data-24.1.1.dist-info/WHEEL' 2024-07-03T14:20:31,962 adding 'galaxy_data-24.1.1.dist-info/entry_points.txt' 2024-07-03T14:20:31,963 adding 'galaxy_data-24.1.1.dist-info/top_level.txt' 2024-07-03T14:20:31,968 adding 'galaxy_data-24.1.1.dist-info/RECORD' 2024-07-03T14:20:31,979 removing build/bdist.linux-armv7l/wheel 2024-07-03T14:20:32,143 Building wheel for galaxy-data (pyproject.toml): finished with status 'done' 2024-07-03T14:20:32,162 Created wheel for galaxy-data: filename=galaxy_data-24.1.1-py3-none-any.whl size=682338 sha256=1465375a6aa7b3e3bbbd6bd22f2ed567f958fab070f6df624ecfbc49bcdaa625 2024-07-03T14:20:32,163 Stored in directory: /tmp/pip-ephem-wheel-cache-gv9vce7_/wheels/d2/22/20/2a272c5b7c60cbcc7aa4faf102b4bb690019d366597adea891 2024-07-03T14:20:32,191 Successfully built galaxy-data 2024-07-03T14:20:32,213 Removed build tracker: '/tmp/pip-build-tracker-sbfuhoxh'