2024-07-03T14:22:48,612 Created temporary directory: /tmp/pip-build-tracker-ooglc3gy 2024-07-03T14:22:48,613 Initialized build tracking at /tmp/pip-build-tracker-ooglc3gy 2024-07-03T14:22:48,613 Created build tracker: /tmp/pip-build-tracker-ooglc3gy 2024-07-03T14:22:48,614 Entered build tracker: /tmp/pip-build-tracker-ooglc3gy 2024-07-03T14:22:48,615 Created temporary directory: /tmp/pip-wheel-218txar6 2024-07-03T14:22:48,618 Created temporary directory: /tmp/pip-ephem-wheel-cache-j2zk0d4s 2024-07-03T14:22:48,644 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2024-07-03T14:22:48,647 2 location(s) to search for versions of galaxy-app: 2024-07-03T14:22:48,647 * https://pypi.org/simple/galaxy-app/ 2024-07-03T14:22:48,647 * https://www.piwheels.org/simple/galaxy-app/ 2024-07-03T14:22:48,648 Fetching project page and analyzing links: https://pypi.org/simple/galaxy-app/ 2024-07-03T14:22:48,649 Getting page https://pypi.org/simple/galaxy-app/ 2024-07-03T14:22:48,650 Found index url https://pypi.org/simple/ 2024-07-03T14:22:48,861 Fetched page https://pypi.org/simple/galaxy-app/ as application/vnd.pypi.simple.v1+json 2024-07-03T14:22:48,869 Found link https://files.pythonhosted.org/packages/cd/3d/994b7f4faaee2a95a31af125e96734f3daa9f39e6decd0f7a09950ef686c/galaxy-app-20.5.0.tar.gz (from https://pypi.org/simple/galaxy-app/), version: 20.5.0 2024-07-03T14:22:48,870 Skipping link: No binaries permitted for galaxy-app: https://files.pythonhosted.org/packages/0e/45/8db530ec699e0de1e6307285126e8bba3dca8ffe575e9994b0c56aa01e35/galaxy_app-20.5.0-py2.py3-none-any.whl (from https://pypi.org/simple/galaxy-app/) 2024-07-03T14:22:48,870 Found link https://files.pythonhosted.org/packages/39/7b/ed47204e833f922db4fc7e96d8de33650a57856999b95145a9e5414270b1/galaxy-app-20.9.0.tar.gz (from https://pypi.org/simple/galaxy-app/), version: 20.9.0 2024-07-03T14:22:48,871 Skipping link: No binaries permitted for galaxy-app: https://files.pythonhosted.org/packages/74/6e/cd07342b2790bc4ec0f3d03eb559fdee76513d00657c2897ad5517615704/galaxy_app-20.9.0-py2.py3-none-any.whl (from https://pypi.org/simple/galaxy-app/) 2024-07-03T14:22:48,872 Found link https://files.pythonhosted.org/packages/bb/d4/bbe8b30220b07000291c571508565a6b2c803c8b3580f4edb50dec7dfb25/galaxy-app-21.9.0.tar.gz (from https://pypi.org/simple/galaxy-app/), version: 21.9.0 2024-07-03T14:22:48,872 Skipping link: No binaries permitted for galaxy-app: https://files.pythonhosted.org/packages/2a/c8/f3c20efbe004b6968ac2f89cfc60e77d96b0a45844d864f7d4f84e985b6e/galaxy_app-21.9.0-py2.py3-none-any.whl (from https://pypi.org/simple/galaxy-app/) 2024-07-03T14:22:48,873 Found link https://files.pythonhosted.org/packages/ac/8b/73350a0f611102667eabde41fa8bcd6ffb49ed5a726f6077366504f8bb42/galaxy-app-22.1.1.tar.gz (from https://pypi.org/simple/galaxy-app/), version: 22.1.1 2024-07-03T14:22:48,874 Skipping link: No binaries permitted for galaxy-app: https://files.pythonhosted.org/packages/e4/40/ca62a2cd45b022310bd0d4ce05f5ed3d59e8f994d19e31c3fc0410da4b45/galaxy_app-22.1.1-py2.py3-none-any.whl (from https://pypi.org/simple/galaxy-app/) 2024-07-03T14:22:48,875 Found link https://files.pythonhosted.org/packages/89/47/4d9cc66c90213feb9f0a8e10fcea2ab93f66d90f289f5e0d72ef6dafcab9/galaxy-app-23.0.1.tar.gz (from https://pypi.org/simple/galaxy-app/) (requires-python:>=3.7), version: 23.0.1 2024-07-03T14:22:48,875 Skipping link: No binaries permitted for galaxy-app: https://files.pythonhosted.org/packages/d6/1d/9c9721f6bdcb3de36c2f9946af6639696d33f43a3934d9edd95f00d349e5/galaxy_app-23.0.1-py3-none-any.whl (from https://pypi.org/simple/galaxy-app/) (requires-python:>=3.7) 2024-07-03T14:22:48,876 Found link https://files.pythonhosted.org/packages/fc/5e/993fc4df93a146b8e11719fd70d92dddf4b5a2e14c2a5006ad5c7320857e/galaxy-app-23.0.2.tar.gz (from https://pypi.org/simple/galaxy-app/) (requires-python:>=3.7), version: 23.0.2 2024-07-03T14:22:48,877 Skipping link: No binaries permitted for galaxy-app: https://files.pythonhosted.org/packages/7c/cf/3e8752a5c5858f6a096a04d57f31653c5fdbdcb0740ec4f00d29db037a65/galaxy_app-23.0.2-py3-none-any.whl (from https://pypi.org/simple/galaxy-app/) (requires-python:>=3.7) 2024-07-03T14:22:48,878 Found link https://files.pythonhosted.org/packages/86/9a/1c845471521630df79226096bed68473fe2e355985ac4c2830ee0f2d6420/galaxy-app-23.0.3.tar.gz (from https://pypi.org/simple/galaxy-app/) (requires-python:>=3.7), version: 23.0.3 2024-07-03T14:22:48,879 Skipping link: No binaries permitted for galaxy-app: https://files.pythonhosted.org/packages/08/19/3c5252502bf8984448c6713825aea0efb9ba4de747eb073568b2679afc94/galaxy_app-23.0.3-py3-none-any.whl (from https://pypi.org/simple/galaxy-app/) (requires-python:>=3.7) 2024-07-03T14:22:48,880 Found link https://files.pythonhosted.org/packages/7b/69/05dfb348db46268dfd2096cea8f42d37bb0d5f6e55202f684607fc4fa1e2/galaxy-app-23.0.4.tar.gz (from https://pypi.org/simple/galaxy-app/) (requires-python:>=3.7), version: 23.0.4 2024-07-03T14:22:48,880 Skipping link: No binaries permitted for galaxy-app: https://files.pythonhosted.org/packages/12/d3/cd3e8e4b280236df34705ac5745d6cb657593b9b6064e6980df863dbfba0/galaxy_app-23.0.4-py3-none-any.whl (from https://pypi.org/simple/galaxy-app/) (requires-python:>=3.7) 2024-07-03T14:22:48,881 Found link https://files.pythonhosted.org/packages/9f/d5/eca55f6fa4a9147f5b72dd6a593a0c36280f2bc3a5bf95d95cb4112f92a8/galaxy-app-23.0.5.tar.gz (from https://pypi.org/simple/galaxy-app/) (requires-python:>=3.7), version: 23.0.5 2024-07-03T14:22:48,882 Skipping link: No binaries permitted for galaxy-app: https://files.pythonhosted.org/packages/d4/26/d168ceb65d4c9d6ef67c88f061d8eb88d7e845a2f10f10b7d1270d5acb37/galaxy_app-23.0.5-py3-none-any.whl (from https://pypi.org/simple/galaxy-app/) (requires-python:>=3.7) 2024-07-03T14:22:48,882 Found link https://files.pythonhosted.org/packages/86/9e/41165df0dabc7ff036d7a2daa00fe555770e7dbfb1e208f2847d756be48c/galaxy-app-23.0.6.tar.gz (from https://pypi.org/simple/galaxy-app/) (requires-python:>=3.7), version: 23.0.6 2024-07-03T14:22:48,883 Skipping link: No binaries permitted for galaxy-app: https://files.pythonhosted.org/packages/e8/73/abf8595c6097c3b6ffbe95cd4cdbf404a5cf6ad7b292545cc4d1cb87d4a0/galaxy_app-23.0.6-py3-none-any.whl (from https://pypi.org/simple/galaxy-app/) (requires-python:>=3.7) 2024-07-03T14:22:48,884 Found link https://files.pythonhosted.org/packages/41/07/083718b816053a9f97e5e678ac9bed14b31d3a224026170e58be13f37fba/galaxy-app-23.1.dev0.tar.gz (from https://pypi.org/simple/galaxy-app/) (requires-python:>=3.7), version: 23.1.dev0 2024-07-03T14:22:48,884 Skipping link: No binaries permitted for galaxy-app: https://files.pythonhosted.org/packages/7a/89/50a4575db66b638bee6f241f902f556eaa27855d7f0fd3323551bdb09f5d/galaxy_app-23.1.dev0-py3-none-any.whl (from https://pypi.org/simple/galaxy-app/) (requires-python:>=3.7) 2024-07-03T14:22:48,885 Found link https://files.pythonhosted.org/packages/96/67/be959ad3f838e23eec1821ba494202846a79ed3add7f603feab6a46e21f3/galaxy-app-23.1.1.tar.gz (from https://pypi.org/simple/galaxy-app/) (requires-python:>=3.7), version: 23.1.1 2024-07-03T14:22:48,886 Skipping link: No binaries permitted for galaxy-app: https://files.pythonhosted.org/packages/c8/f7/a84fe8d48fb96f5e96981ca3f60491f856efa4f2463722fa75ad8dcec7a7/galaxy_app-23.1.1-py3-none-any.whl (from https://pypi.org/simple/galaxy-app/) (requires-python:>=3.7) 2024-07-03T14:22:48,887 Found link https://files.pythonhosted.org/packages/ad/a6/798ae0b3aa469f382a3b4350fc394ebe60559177717140e48f97ae81d4a3/galaxy-app-23.1.2.tar.gz (from https://pypi.org/simple/galaxy-app/) (requires-python:>=3.7), version: 23.1.2 2024-07-03T14:22:48,888 Skipping link: No binaries permitted for galaxy-app: https://files.pythonhosted.org/packages/54/ef/8264cbce6eca0cd434001d62c838cd4798aa478a6af7879b83299c28193d/galaxy_app-23.1.2-py3-none-any.whl (from https://pypi.org/simple/galaxy-app/) (requires-python:>=3.7) 2024-07-03T14:22:48,888 Found link https://files.pythonhosted.org/packages/26/ba/0995031cda92688ec41ab4ad0cc11b148fd5caecf21e414928464bea82f8/galaxy-app-23.1.3.tar.gz (from https://pypi.org/simple/galaxy-app/) (requires-python:>=3.7), version: 23.1.3 2024-07-03T14:22:48,889 Skipping link: No binaries permitted for galaxy-app: https://files.pythonhosted.org/packages/03/0f/747509841f1baad002247bb2956344ce1ebb9703ab941c149f5456b32c31/galaxy_app-23.1.3-py3-none-any.whl (from https://pypi.org/simple/galaxy-app/) (requires-python:>=3.7) 2024-07-03T14:22:48,891 Found link https://files.pythonhosted.org/packages/de/63/8be8d20cf1c913da72f9b69af53b711dccc0a998718c2abf93349bdf5301/galaxy-app-23.1.4.tar.gz (from https://pypi.org/simple/galaxy-app/) (requires-python:>=3.7), version: 23.1.4 2024-07-03T14:22:48,891 Skipping link: No binaries permitted for galaxy-app: https://files.pythonhosted.org/packages/60/97/43d48dc8d2d332faab8a4439b68c7cbbd528f7b9d48c8a0092d60cc5124d/galaxy_app-23.1.4-py3-none-any.whl (from https://pypi.org/simple/galaxy-app/) (requires-python:>=3.7) 2024-07-03T14:22:48,892 Found link https://files.pythonhosted.org/packages/2f/6c/b024d7c86132a8926709338c49bef02ac75821d997e60030744cf4e65ed0/galaxy-app-23.2.1.tar.gz (from https://pypi.org/simple/galaxy-app/) (requires-python:>=3.7), version: 23.2.1 2024-07-03T14:22:48,892 Skipping link: No binaries permitted for galaxy-app: https://files.pythonhosted.org/packages/b9/89/c6d435aa81c1e8bfc9a11ffe2ce1212d1f7251be748aa684ad150a337b25/galaxy_app-23.2.1-py3-none-any.whl (from https://pypi.org/simple/galaxy-app/) (requires-python:>=3.7) 2024-07-03T14:22:48,893 Found link https://files.pythonhosted.org/packages/10/8a/8722621711150c5522028ae4f5ecd1a7e12cd7e430a6b9cf2f8f4d1ff409/galaxy-app-24.0.0.tar.gz (from https://pypi.org/simple/galaxy-app/) (requires-python:>=3.8), version: 24.0.0 2024-07-03T14:22:48,894 Skipping link: No binaries permitted for galaxy-app: https://files.pythonhosted.org/packages/23/72/37370b092b6ea34491efdb854990cba6068b4a3b6eef26947c2ab1274f69/galaxy_app-24.0.0-py3-none-any.whl (from https://pypi.org/simple/galaxy-app/) (requires-python:>=3.8) 2024-07-03T14:22:48,894 Skipping link: No binaries permitted for galaxy-app: https://files.pythonhosted.org/packages/8a/2b/e66673f317e13ca426074d88f5180a2836f281f3c292275db2fdb44d15fe/galaxy_app-24.0.1-py3-none-any.whl (from https://pypi.org/simple/galaxy-app/) (requires-python:>=3.8) 2024-07-03T14:22:48,895 Found link https://files.pythonhosted.org/packages/1b/a9/861c3fdb557700065a00872db1752b8f4797de95325630397f96c99146bd/galaxy_app-24.0.1.tar.gz (from https://pypi.org/simple/galaxy-app/) (requires-python:>=3.8), version: 24.0.1 2024-07-03T14:22:48,896 Skipping link: No binaries permitted for galaxy-app: https://files.pythonhosted.org/packages/0a/a5/2c0d3d616a72e3ee35b36a3aa9d449b8c174fc181a993c01d4078e6443b1/galaxy_app-24.0.2-py3-none-any.whl (from https://pypi.org/simple/galaxy-app/) (requires-python:>=3.8) 2024-07-03T14:22:48,897 Found link https://files.pythonhosted.org/packages/31/53/8f944700770dbafae351efe5557d476c3ad478f8dddb0cf8c0e5d0269bd8/galaxy_app-24.0.2.tar.gz (from https://pypi.org/simple/galaxy-app/) (requires-python:>=3.8), version: 24.0.2 2024-07-03T14:22:48,898 Skipping link: No binaries permitted for galaxy-app: https://files.pythonhosted.org/packages/e7/44/e5c37f7ebac240ff67705b771890f8741a1f3ab6d6096e4413f44c690230/galaxy_app-24.0.3-py3-none-any.whl (from https://pypi.org/simple/galaxy-app/) (requires-python:>=3.8) 2024-07-03T14:22:48,899 Found link https://files.pythonhosted.org/packages/b6/50/b2598fe6756e78bbb2d4d816b17700ebbda5a18099a99676d7a882b23973/galaxy_app-24.0.3.tar.gz (from https://pypi.org/simple/galaxy-app/) (requires-python:>=3.8), version: 24.0.3 2024-07-03T14:22:48,899 Skipping link: No binaries permitted for galaxy-app: https://files.pythonhosted.org/packages/89/19/1e93f18d2569aa1adde55049c082b526dec915ec5fd97c2ee1a00bd27230/galaxy_app-24.1.1-py3-none-any.whl (from https://pypi.org/simple/galaxy-app/) (requires-python:>=3.8) 2024-07-03T14:22:48,900 Found link https://files.pythonhosted.org/packages/cc/bf/be693f715cd1f196126e60b1a1b1b355a3297e210b05f17579beef281993/galaxy_app-24.1.1.tar.gz (from https://pypi.org/simple/galaxy-app/) (requires-python:>=3.8), version: 24.1.1 2024-07-03T14:22:48,901 Fetching project page and analyzing links: https://www.piwheels.org/simple/galaxy-app/ 2024-07-03T14:22:48,902 Getting page https://www.piwheels.org/simple/galaxy-app/ 2024-07-03T14:22:48,903 Found index url https://www.piwheels.org/simple/ 2024-07-03T14:22:49,052 Fetched page https://www.piwheels.org/simple/galaxy-app/ as text/html 2024-07-03T14:22:49,058 Skipping link: No binaries permitted for galaxy-app: https://www.piwheels.org/simple/galaxy-app/galaxy_app-24.0.3-py3-none-any.whl#sha256=485bacde600c1e704bf96d444683f8d254f03dcad9d59cbecc6ef6434be032f9 (from https://www.piwheels.org/simple/galaxy-app/) (requires-python:>=3.8) 2024-07-03T14:22:49,058 Skipping link: No binaries permitted for galaxy-app: https://www.piwheels.org/simple/galaxy-app/galaxy_app-24.0.2-py3-none-any.whl#sha256=c42cadb7f2e6473f37ca6a906c35ab3eccaa056126134a7519406842ef57b63f (from https://www.piwheels.org/simple/galaxy-app/) (requires-python:>=3.8) 2024-07-03T14:22:49,059 Skipping link: No binaries permitted for galaxy-app: https://www.piwheels.org/simple/galaxy-app/galaxy_app-24.0.1-py3-none-any.whl#sha256=a203d2b0535783470077aeef294bcf5ef0664ea223202a97c46f96899a1d723b (from https://www.piwheels.org/simple/galaxy-app/) (requires-python:>=3.8) 2024-07-03T14:22:49,059 Skipping link: No binaries permitted for galaxy-app: https://www.piwheels.org/simple/galaxy-app/galaxy_app-24.0.0-py3-none-any.whl#sha256=2b9d3bce166e31abb2ffc8c574fc111268b8f1a67dea6324c88de325d8b110d4 (from https://www.piwheels.org/simple/galaxy-app/) (requires-python:>=3.8) 2024-07-03T14:22:49,060 Skipping link: No binaries permitted for galaxy-app: https://www.piwheels.org/simple/galaxy-app/galaxy_app-23.2.1-py3-none-any.whl#sha256=e37a8c0551dded98be57102c74e99152b15aa0369a4b28287c95e0b0e1b0c7f9 (from https://www.piwheels.org/simple/galaxy-app/) (requires-python:>=3.7) 2024-07-03T14:22:49,060 Skipping link: No binaries permitted for galaxy-app: https://www.piwheels.org/simple/galaxy-app/galaxy_app-23.1.4-py3-none-any.whl#sha256=a0d156aebf5163d1c632ec4c512d86f60cd8848ff63bfdee5e72f0b2b1ea9942 (from https://www.piwheels.org/simple/galaxy-app/) (requires-python:>=3.7) 2024-07-03T14:22:49,061 Skipping link: No binaries permitted for galaxy-app: 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https://www.piwheels.org/simple/galaxy-app/galaxy_app-23.0.4-py3-none-any.whl#sha256=0645d80a13b5594f7067c91e672962bdc25e46a38081f18d11d0aeaa34f8ee3d (from https://www.piwheels.org/simple/galaxy-app/) (requires-python:>=3.7) 2024-07-03T14:22:49,064 Skipping link: No binaries permitted for galaxy-app: https://www.piwheels.org/simple/galaxy-app/galaxy_app-23.0.3-py3-none-any.whl#sha256=a65f158d80ecabd0d612e24816a2e517007a19648a67381bdee48058c8236014 (from https://www.piwheels.org/simple/galaxy-app/) (requires-python:>=3.7) 2024-07-03T14:22:49,065 Skipping link: No binaries permitted for galaxy-app: https://www.piwheels.org/simple/galaxy-app/galaxy_app-23.0.2-py3-none-any.whl#sha256=09f32912adb5c90cdbbcc5e2f3168a54501cb7595d207b2e660e4235e7e46067 (from https://www.piwheels.org/simple/galaxy-app/) (requires-python:>=3.7) 2024-07-03T14:22:49,066 Skipping link: No binaries permitted for galaxy-app: https://www.piwheels.org/simple/galaxy-app/galaxy_app-23.0.1-py3-none-any.whl#sha256=e16745e48d15e5e5cb83991066b1e2dcb2333d49dac992e2601b9fc6af8f45a4 (from https://www.piwheels.org/simple/galaxy-app/) (requires-python:>=3.7) 2024-07-03T14:22:49,066 Skipping link: No binaries permitted for galaxy-app: https://www.piwheels.org/simple/galaxy-app/galaxy_app-20.9.0-py2.py3-none-any.whl#sha256=d6b3897be5b3c63e0c7f914f9ce7df087cb3df8fa6d55b1475c7d933cdb09a29 (from https://www.piwheels.org/simple/galaxy-app/) 2024-07-03T14:22:49,067 Skipping link: No binaries permitted for galaxy-app: https://www.piwheels.org/simple/galaxy-app/galaxy_app-20.5.0-py2.py3-none-any.whl#sha256=2aa533c8296a5843fd06ce934c7c817845b12286e6b62fb94bb685f0259d9ad0 (from https://www.piwheels.org/simple/galaxy-app/) 2024-07-03T14:22:49,067 Skipping link: not a file: https://www.piwheels.org/simple/galaxy-app/ 2024-07-03T14:22:49,068 Skipping link: not a file: https://pypi.org/simple/galaxy-app/ 2024-07-03T14:22:49,090 Given no hashes to check 1 links for project 'galaxy-app': discarding no candidates 2024-07-03T14:22:49,110 Collecting galaxy-app==24.1.1 2024-07-03T14:22:49,112 Created temporary directory: /tmp/pip-unpack-klcxo2oj 2024-07-03T14:22:49,324 Downloading galaxy_app-24.1.1.tar.gz (1.2 MB) 2024-07-03T14:22:50,825 Added galaxy-app==24.1.1 from https://files.pythonhosted.org/packages/cc/bf/be693f715cd1f196126e60b1a1b1b355a3297e210b05f17579beef281993/galaxy_app-24.1.1.tar.gz to build tracker '/tmp/pip-build-tracker-ooglc3gy' 2024-07-03T14:22:50,828 Created temporary directory: /tmp/pip-build-env-95byei_z 2024-07-03T14:22:50,832 Installing build dependencies: started 2024-07-03T14:22:50,834 Running command pip subprocess to install build dependencies 2024-07-03T14:22:52,004 Using pip 24.0 from /usr/local/lib/python3.11/dist-packages/pip (python 3.11) 2024-07-03T14:22:52,538 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2024-07-03T14:22:53,993 Collecting setuptools 2024-07-03T14:22:54,007 Using cached https://www.piwheels.org/simple/setuptools/setuptools-70.2.0-py3-none-any.whl (930 kB) 2024-07-03T14:22:56,642 Installing collected packages: setuptools 2024-07-03T14:22:59,188 Successfully installed setuptools-70.2.0 2024-07-03T14:22:59,502 [notice] A new release of pip is available: 24.0 -> 24.1.1 2024-07-03T14:22:59,503 [notice] To update, run: python3 -m pip install --upgrade pip 2024-07-03T14:22:59,766 Installing build dependencies: finished with status 'done' 2024-07-03T14:22:59,769 Getting requirements to build wheel: started 2024-07-03T14:22:59,770 Running command Getting requirements to build wheel 2024-07-03T14:23:00,515 running egg_info 2024-07-03T14:23:00,519 writing galaxy_app.egg-info/PKG-INFO 2024-07-03T14:23:00,525 writing dependency_links to galaxy_app.egg-info/dependency_links.txt 2024-07-03T14:23:00,527 writing entry points to galaxy_app.egg-info/entry_points.txt 2024-07-03T14:23:00,530 writing requirements to galaxy_app.egg-info/requires.txt 2024-07-03T14:23:00,531 writing top-level names to galaxy_app.egg-info/top_level.txt 2024-07-03T14:23:00,613 reading manifest file 'galaxy_app.egg-info/SOURCES.txt' 2024-07-03T14:23:00,661 reading manifest template 'MANIFEST.in' 2024-07-03T14:23:01,143 adding license file 'LICENSE' 2024-07-03T14:23:01,171 writing manifest file 'galaxy_app.egg-info/SOURCES.txt' 2024-07-03T14:23:01,260 Getting requirements to build wheel: finished with status 'done' 2024-07-03T14:23:01,263 Created temporary directory: /tmp/pip-modern-metadata-o_0t8eyg 2024-07-03T14:23:01,265 Preparing metadata (pyproject.toml): started 2024-07-03T14:23:01,266 Running command Preparing metadata (pyproject.toml) 2024-07-03T14:23:01,869 running dist_info 2024-07-03T14:23:01,873 creating /tmp/pip-modern-metadata-o_0t8eyg/galaxy_app.egg-info 2024-07-03T14:23:01,877 writing /tmp/pip-modern-metadata-o_0t8eyg/galaxy_app.egg-info/PKG-INFO 2024-07-03T14:23:01,883 writing dependency_links to /tmp/pip-modern-metadata-o_0t8eyg/galaxy_app.egg-info/dependency_links.txt 2024-07-03T14:23:01,885 writing entry points to /tmp/pip-modern-metadata-o_0t8eyg/galaxy_app.egg-info/entry_points.txt 2024-07-03T14:23:01,887 writing requirements to /tmp/pip-modern-metadata-o_0t8eyg/galaxy_app.egg-info/requires.txt 2024-07-03T14:23:01,888 writing top-level names to /tmp/pip-modern-metadata-o_0t8eyg/galaxy_app.egg-info/top_level.txt 2024-07-03T14:23:01,889 writing manifest file '/tmp/pip-modern-metadata-o_0t8eyg/galaxy_app.egg-info/SOURCES.txt' 2024-07-03T14:23:01,959 reading manifest file '/tmp/pip-modern-metadata-o_0t8eyg/galaxy_app.egg-info/SOURCES.txt' 2024-07-03T14:23:01,961 reading manifest template 'MANIFEST.in' 2024-07-03T14:23:02,462 adding license file 'LICENSE' 2024-07-03T14:23:02,483 writing manifest file '/tmp/pip-modern-metadata-o_0t8eyg/galaxy_app.egg-info/SOURCES.txt' 2024-07-03T14:23:02,485 creating '/tmp/pip-modern-metadata-o_0t8eyg/galaxy_app-24.1.1.dist-info' 2024-07-03T14:23:02,635 Preparing metadata (pyproject.toml): finished with status 'done' 2024-07-03T14:23:02,645 Source in /tmp/pip-wheel-218txar6/galaxy-app_08d6a02a597d4564b98dbf885a352390 has version 24.1.1, which satisfies requirement galaxy-app==24.1.1 from https://files.pythonhosted.org/packages/cc/bf/be693f715cd1f196126e60b1a1b1b355a3297e210b05f17579beef281993/galaxy_app-24.1.1.tar.gz 2024-07-03T14:23:02,646 Removed galaxy-app==24.1.1 from https://files.pythonhosted.org/packages/cc/bf/be693f715cd1f196126e60b1a1b1b355a3297e210b05f17579beef281993/galaxy_app-24.1.1.tar.gz from build tracker '/tmp/pip-build-tracker-ooglc3gy' 2024-07-03T14:23:02,659 Created temporary directory: /tmp/pip-unpack-xe2dmqbk 2024-07-03T14:23:02,660 Created temporary directory: /tmp/pip-unpack-swvfezfk 2024-07-03T14:23:02,712 Building wheels for collected packages: galaxy-app 2024-07-03T14:23:02,716 Created temporary directory: /tmp/pip-wheel-v6v76lrm 2024-07-03T14:23:02,717 Destination directory: /tmp/pip-wheel-v6v76lrm 2024-07-03T14:23:02,719 Building wheel for galaxy-app (pyproject.toml): started 2024-07-03T14:23:02,720 Running command Building wheel for galaxy-app (pyproject.toml) 2024-07-03T14:23:03,306 running bdist_wheel 2024-07-03T14:23:03,346 running build 2024-07-03T14:23:03,346 running build_py 2024-07-03T14:23:03,353 creating build 2024-07-03T14:23:03,354 creating build/lib 2024-07-03T14:23:03,354 creating build/lib/galaxy 2024-07-03T14:23:03,356 copying galaxy/app.py -> build/lib/galaxy 2024-07-03T14:23:03,359 copying galaxy/main_config.py -> build/lib/galaxy 2024-07-03T14:23:03,361 copying galaxy/main.py -> build/lib/galaxy 2024-07-03T14:23:03,363 copying galaxy/__init__.py -> build/lib/galaxy 2024-07-03T14:23:03,364 copying galaxy/queues.py -> build/lib/galaxy 2024-07-03T14:23:03,366 copying galaxy/config_watchers.py -> build/lib/galaxy 2024-07-03T14:23:03,368 copying galaxy/structured_app.py -> build/lib/galaxy 2024-07-03T14:23:03,370 copying galaxy/queue_worker.py -> build/lib/galaxy 2024-07-03T14:23:03,373 copying galaxy/di.py -> build/lib/galaxy 2024-07-03T14:23:03,375 creating build/lib/tool_shed_client 2024-07-03T14:23:03,376 copying tool_shed_client/trs_util.py -> build/lib/tool_shed_client 2024-07-03T14:23:03,378 copying tool_shed_client/__init__.py -> build/lib/tool_shed_client 2024-07-03T14:23:03,379 creating build/lib/galaxy_ext 2024-07-03T14:23:03,380 copying galaxy_ext/__init__.py -> build/lib/galaxy_ext 2024-07-03T14:23:03,382 creating build/lib/galaxy/short_term_storage 2024-07-03T14:23:03,383 copying galaxy/short_term_storage/__init__.py -> build/lib/galaxy/short_term_storage 2024-07-03T14:23:03,386 creating build/lib/galaxy/visualization 2024-07-03T14:23:03,387 copying galaxy/visualization/__init__.py -> build/lib/galaxy/visualization 2024-07-03T14:23:03,388 copying galaxy/visualization/genomes.py -> build/lib/galaxy/visualization 2024-07-03T14:23:03,391 creating build/lib/galaxy/app_unittest_utils 2024-07-03T14:23:03,392 copying galaxy/app_unittest_utils/tools_support.py -> build/lib/galaxy/app_unittest_utils 2024-07-03T14:23:03,394 copying galaxy/app_unittest_utils/galaxy_mock.py -> build/lib/galaxy/app_unittest_utils 2024-07-03T14:23:03,397 copying galaxy/app_unittest_utils/__init__.py -> build/lib/galaxy/app_unittest_utils 2024-07-03T14:23:03,398 copying galaxy/app_unittest_utils/toolbox_support.py -> build/lib/galaxy/app_unittest_utils 2024-07-03T14:23:03,401 creating build/lib/galaxy/tools 2024-07-03T14:23:03,402 copying galaxy/tools/cache.py -> build/lib/galaxy/tools 2024-07-03T14:23:03,404 copying galaxy/tools/test.py -> build/lib/galaxy/tools 2024-07-03T14:23:03,407 copying galaxy/tools/recommendations.py -> build/lib/galaxy/tools 2024-07-03T14:23:03,409 copying galaxy/tools/repositories.py -> build/lib/galaxy/tools 2024-07-03T14:23:03,411 copying galaxy/tools/execute.py -> build/lib/galaxy/tools 2024-07-03T14:23:03,413 copying galaxy/tools/errors.py -> build/lib/galaxy/tools 2024-07-03T14:23:03,415 copying galaxy/tools/data_fetch.py -> build/lib/galaxy/tools 2024-07-03T14:23:03,417 copying galaxy/tools/exception_handling.py -> build/lib/galaxy/tools 2024-07-03T14:23:03,419 copying galaxy/tools/__init__.py -> build/lib/galaxy/tools 2024-07-03T14:23:03,424 copying galaxy/tools/biotools.py -> build/lib/galaxy/tools 2024-07-03T14:23:03,426 copying galaxy/tools/special_tools.py -> build/lib/galaxy/tools 2024-07-03T14:23:03,428 copying galaxy/tools/wrappers.py -> build/lib/galaxy/tools 2024-07-03T14:23:03,430 copying galaxy/tools/evaluation.py -> build/lib/galaxy/tools 2024-07-03T14:23:03,433 copying galaxy/tools/remote_tool_eval.py -> build/lib/galaxy/tools 2024-07-03T14:23:03,436 creating build/lib/galaxy/dependencies 2024-07-03T14:23:03,437 copying galaxy/dependencies/__init__.py -> build/lib/galaxy/dependencies 2024-07-03T14:23:03,440 creating build/lib/galaxy/jobs 2024-07-03T14:23:03,441 copying galaxy/jobs/__init__.py -> build/lib/galaxy/jobs 2024-07-03T14:23:03,445 copying galaxy/jobs/handler.py -> build/lib/galaxy/jobs 2024-07-03T14:23:03,448 copying galaxy/jobs/stock_rules.py -> build/lib/galaxy/jobs 2024-07-03T14:23:03,450 copying galaxy/jobs/rule_helper.py -> build/lib/galaxy/jobs 2024-07-03T14:23:03,452 copying galaxy/jobs/mapper.py -> build/lib/galaxy/jobs 2024-07-03T14:23:03,454 copying galaxy/jobs/dynamic_tool_destination.py -> build/lib/galaxy/jobs 2024-07-03T14:23:03,457 copying galaxy/jobs/manager.py -> build/lib/galaxy/jobs 2024-07-03T14:23:03,459 copying galaxy/jobs/command_factory.py -> build/lib/galaxy/jobs 2024-07-03T14:23:03,462 creating build/lib/galaxy/actions 2024-07-03T14:23:03,463 copying galaxy/actions/library.py -> build/lib/galaxy/actions 2024-07-03T14:23:03,465 copying galaxy/actions/__init__.py -> build/lib/galaxy/actions 2024-07-03T14:23:03,469 creating build/lib/galaxy/managers 2024-07-03T14:23:03,470 copying galaxy/managers/dbkeys.py -> build/lib/galaxy/managers 2024-07-03T14:23:03,472 copying galaxy/managers/forms.py -> build/lib/galaxy/managers 2024-07-03T14:23:03,473 copying galaxy/managers/item_tags.py -> build/lib/galaxy/managers 2024-07-03T14:23:03,475 copying galaxy/managers/tasks.py -> build/lib/galaxy/managers 2024-07-03T14:23:03,477 copying galaxy/managers/job_connections.py -> build/lib/galaxy/managers 2024-07-03T14:23:03,479 copying galaxy/managers/workflows.py -> build/lib/galaxy/managers 2024-07-03T14:23:03,482 copying galaxy/managers/file_source_instances.py -> build/lib/galaxy/managers 2024-07-03T14:23:03,485 copying galaxy/managers/collections.py -> build/lib/galaxy/managers 2024-07-03T14:23:03,487 copying galaxy/managers/secured.py -> build/lib/galaxy/managers 2024-07-03T14:23:03,489 copying galaxy/managers/context.py -> build/lib/galaxy/managers 2024-07-03T14:23:03,491 copying galaxy/managers/model_stores.py -> build/lib/galaxy/managers 2024-07-03T14:23:03,493 copying galaxy/managers/remote_files.py -> build/lib/galaxy/managers 2024-07-03T14:23:03,495 copying galaxy/managers/configuration.py -> build/lib/galaxy/managers 2024-07-03T14:23:03,498 copying galaxy/managers/history_contents.py -> build/lib/galaxy/managers 2024-07-03T14:23:03,500 copying galaxy/managers/executables.py -> build/lib/galaxy/managers 2024-07-03T14:23:03,502 copying galaxy/managers/datatypes.py -> build/lib/galaxy/managers 2024-07-03T14:23:03,504 copying galaxy/managers/_config_templates.py -> build/lib/galaxy/managers 2024-07-03T14:23:03,506 copying galaxy/managers/group_users.py -> build/lib/galaxy/managers 2024-07-03T14:23:03,507 copying galaxy/managers/citations.py -> build/lib/galaxy/managers 2024-07-03T14:23:03,509 copying galaxy/managers/quotas.py -> build/lib/galaxy/managers 2024-07-03T14:23:03,511 copying galaxy/managers/histories.py -> build/lib/galaxy/managers 2024-07-03T14:23:03,514 copying galaxy/managers/rbac_secured.py -> build/lib/galaxy/managers 2024-07-03T14:23:03,516 copying galaxy/managers/interactivetool.py -> build/lib/galaxy/managers 2024-07-03T14:23:03,519 copying galaxy/managers/visualizations.py -> build/lib/galaxy/managers 2024-07-03T14:23:03,521 copying galaxy/managers/session.py -> build/lib/galaxy/managers 2024-07-03T14:23:03,523 copying galaxy/managers/sharable.py -> build/lib/galaxy/managers 2024-07-03T14:23:03,525 copying galaxy/managers/notification.py -> build/lib/galaxy/managers 2024-07-03T14:23:03,528 copying galaxy/managers/export_tracker.py -> build/lib/galaxy/managers 2024-07-03T14:23:03,530 copying galaxy/managers/ratable.py -> build/lib/galaxy/managers 2024-07-03T14:23:03,532 copying galaxy/managers/groups.py -> build/lib/galaxy/managers 2024-07-03T14:23:03,534 copying galaxy/managers/base.py -> build/lib/galaxy/managers 2024-07-03T14:23:03,537 copying galaxy/managers/licenses.py -> build/lib/galaxy/managers 2024-07-03T14:23:03,539 copying galaxy/managers/__init__.py -> build/lib/galaxy/managers 2024-07-03T14:23:03,540 copying galaxy/managers/datasets.py -> build/lib/galaxy/managers 2024-07-03T14:23:03,543 copying galaxy/managers/tools.py -> build/lib/galaxy/managers 2024-07-03T14:23:03,545 copying galaxy/managers/markdown_parse.py -> build/lib/galaxy/managers 2024-07-03T14:23:03,547 copying galaxy/managers/tool_data.py -> build/lib/galaxy/managers 2024-07-03T14:23:03,549 copying galaxy/managers/group_roles.py -> build/lib/galaxy/managers 2024-07-03T14:23:03,551 copying galaxy/managers/display_applications.py -> build/lib/galaxy/managers 2024-07-03T14:23:03,553 copying galaxy/managers/hdcas.py -> build/lib/galaxy/managers 2024-07-03T14:23:03,555 copying galaxy/managers/genomes.py -> build/lib/galaxy/managers 2024-07-03T14:23:03,557 copying galaxy/managers/object_store_instances.py -> build/lib/galaxy/managers 2024-07-03T14:23:03,559 copying galaxy/managers/cloudauthzs.py -> build/lib/galaxy/managers 2024-07-03T14:23:03,561 copying galaxy/managers/folders.py -> build/lib/galaxy/managers 2024-07-03T14:23:03,563 copying galaxy/managers/markdown_util.py -> build/lib/galaxy/managers 2024-07-03T14:23:03,566 copying galaxy/managers/annotatable.py -> build/lib/galaxy/managers 2024-07-03T14:23:03,568 copying galaxy/managers/users.py -> build/lib/galaxy/managers 2024-07-03T14:23:03,571 copying galaxy/managers/taggable.py -> build/lib/galaxy/managers 2024-07-03T14:23:03,573 copying galaxy/managers/deletable.py -> build/lib/galaxy/managers 2024-07-03T14:23:03,575 copying galaxy/managers/lddas.py -> build/lib/galaxy/managers 2024-07-03T14:23:03,576 copying galaxy/managers/library_datasets.py -> build/lib/galaxy/managers 2024-07-03T14:23:03,578 copying galaxy/managers/jobs.py -> build/lib/galaxy/managers 2024-07-03T14:23:03,581 copying galaxy/managers/api_keys.py -> build/lib/galaxy/managers 2024-07-03T14:23:03,583 copying galaxy/managers/tags.py -> build/lib/galaxy/managers 2024-07-03T14:23:03,584 copying galaxy/managers/collections_util.py -> build/lib/galaxy/managers 2024-07-03T14:23:03,586 copying galaxy/managers/hdas.py -> build/lib/galaxy/managers 2024-07-03T14:23:03,589 copying galaxy/managers/libraries.py -> build/lib/galaxy/managers 2024-07-03T14:23:03,591 copying galaxy/managers/metrics.py -> build/lib/galaxy/managers 2024-07-03T14:23:03,593 copying galaxy/managers/cloud.py -> build/lib/galaxy/managers 2024-07-03T14:23:03,595 copying galaxy/managers/roles.py -> build/lib/galaxy/managers 2024-07-03T14:23:03,597 copying galaxy/managers/pages.py -> build/lib/galaxy/managers 2024-07-03T14:23:03,601 creating build/lib/galaxy/webhooks 2024-07-03T14:23:03,601 copying galaxy/webhooks/__init__.py -> build/lib/galaxy/webhooks 2024-07-03T14:23:03,604 creating build/lib/galaxy/celery 2024-07-03T14:23:03,604 copying galaxy/celery/tasks.py -> build/lib/galaxy/celery 2024-07-03T14:23:03,607 copying galaxy/celery/_serialization.py -> build/lib/galaxy/celery 2024-07-03T14:23:03,608 copying galaxy/celery/base_task.py -> build/lib/galaxy/celery 2024-07-03T14:23:03,610 copying galaxy/celery/__init__.py -> build/lib/galaxy/celery 2024-07-03T14:23:03,613 creating build/lib/galaxy/tool_shed 2024-07-03T14:23:03,614 copying galaxy/tool_shed/cache.py -> build/lib/galaxy/tool_shed 2024-07-03T14:23:03,616 copying galaxy/tool_shed/repository_type.py -> build/lib/galaxy/tool_shed 2024-07-03T14:23:03,617 copying galaxy/tool_shed/__init__.py -> build/lib/galaxy/tool_shed 2024-07-03T14:23:03,619 creating build/lib/galaxy/carbon_emissions 2024-07-03T14:23:03,620 copying galaxy/carbon_emissions/__init__.py -> build/lib/galaxy/carbon_emissions 2024-07-03T14:23:03,622 creating build/lib/galaxy/work 2024-07-03T14:23:03,623 copying galaxy/work/context.py -> build/lib/galaxy/work 2024-07-03T14:23:03,625 copying galaxy/work/__init__.py -> build/lib/galaxy/work 2024-07-03T14:23:03,627 creating build/lib/galaxy/authnz 2024-07-03T14:23:03,628 copying galaxy/authnz/custos_authnz.py -> build/lib/galaxy/authnz 2024-07-03T14:23:03,630 copying galaxy/authnz/util.py -> build/lib/galaxy/authnz 2024-07-03T14:23:03,632 copying galaxy/authnz/__init__.py -> build/lib/galaxy/authnz 2024-07-03T14:23:03,634 copying galaxy/authnz/psa_authnz.py -> build/lib/galaxy/authnz 2024-07-03T14:23:03,636 copying galaxy/authnz/managers.py -> build/lib/galaxy/authnz 2024-07-03T14:23:03,639 creating build/lib/galaxy/workflow 2024-07-03T14:23:03,640 copying galaxy/workflow/run.py -> build/lib/galaxy/workflow 2024-07-03T14:23:03,643 copying galaxy/workflow/run_request.py -> build/lib/galaxy/workflow 2024-07-03T14:23:03,646 copying galaxy/workflow/trs_proxy.py -> build/lib/galaxy/workflow 2024-07-03T14:23:03,648 copying galaxy/workflow/__init__.py -> build/lib/galaxy/workflow 2024-07-03T14:23:03,649 copying galaxy/workflow/steps.py -> build/lib/galaxy/workflow 2024-07-03T14:23:03,651 copying galaxy/workflow/modules.py -> build/lib/galaxy/workflow 2024-07-03T14:23:03,655 copying galaxy/workflow/render.py -> build/lib/galaxy/workflow 2024-07-03T14:23:03,657 copying galaxy/workflow/extract.py -> build/lib/galaxy/workflow 2024-07-03T14:23:03,660 copying galaxy/workflow/scheduling_manager.py -> build/lib/galaxy/workflow 2024-07-03T14:23:03,663 creating build/lib/galaxy/forms 2024-07-03T14:23:03,664 copying galaxy/forms/forms.py -> build/lib/galaxy/forms 2024-07-03T14:23:03,666 copying galaxy/forms/__init__.py -> build/lib/galaxy/forms 2024-07-03T14:23:03,669 creating build/lib/galaxy/visualization/tracks 2024-07-03T14:23:03,670 copying galaxy/visualization/tracks/__init__.py -> build/lib/galaxy/visualization/tracks 2024-07-03T14:23:03,672 creating build/lib/galaxy/visualization/genome 2024-07-03T14:23:03,673 copying galaxy/visualization/genome/__init__.py -> build/lib/galaxy/visualization/genome 2024-07-03T14:23:03,676 creating build/lib/galaxy/visualization/plugins 2024-07-03T14:23:03,677 copying galaxy/visualization/plugins/plugin.py -> build/lib/galaxy/visualization/plugins 2024-07-03T14:23:03,679 copying galaxy/visualization/plugins/utils.py -> build/lib/galaxy/visualization/plugins 2024-07-03T14:23:03,681 copying galaxy/visualization/plugins/config_parser.py -> build/lib/galaxy/visualization/plugins 2024-07-03T14:23:03,684 copying galaxy/visualization/plugins/__init__.py -> build/lib/galaxy/visualization/plugins 2024-07-03T14:23:03,686 copying galaxy/visualization/plugins/resource_parser.py -> build/lib/galaxy/visualization/plugins 2024-07-03T14:23:03,688 copying galaxy/visualization/plugins/registry.py -> build/lib/galaxy/visualization/plugins 2024-07-03T14:23:03,691 creating build/lib/galaxy/visualization/data_providers 2024-07-03T14:23:03,692 copying galaxy/visualization/data_providers/cigar.py -> build/lib/galaxy/visualization/data_providers 2024-07-03T14:23:03,694 copying galaxy/visualization/data_providers/__init__.py -> build/lib/galaxy/visualization/data_providers 2024-07-03T14:23:03,696 copying galaxy/visualization/data_providers/basic.py -> build/lib/galaxy/visualization/data_providers 2024-07-03T14:23:03,699 copying galaxy/visualization/data_providers/registry.py -> build/lib/galaxy/visualization/data_providers 2024-07-03T14:23:03,701 copying galaxy/visualization/data_providers/genome.py -> build/lib/galaxy/visualization/data_providers 2024-07-03T14:23:03,706 creating build/lib/galaxy/visualization/data_providers/phyloviz 2024-07-03T14:23:03,707 copying galaxy/visualization/data_providers/phyloviz/newickparser.py -> build/lib/galaxy/visualization/data_providers/phyloviz 2024-07-03T14:23:03,710 copying galaxy/visualization/data_providers/phyloviz/baseparser.py -> build/lib/galaxy/visualization/data_providers/phyloviz 2024-07-03T14:23:03,712 copying galaxy/visualization/data_providers/phyloviz/phyloxmlparser.py -> build/lib/galaxy/visualization/data_providers/phyloviz 2024-07-03T14:23:03,714 copying galaxy/visualization/data_providers/phyloviz/__init__.py -> build/lib/galaxy/visualization/data_providers/phyloviz 2024-07-03T14:23:03,716 copying galaxy/visualization/data_providers/phyloviz/nexusparser.py -> build/lib/galaxy/visualization/data_providers/phyloviz 2024-07-03T14:23:03,719 creating build/lib/galaxy/tools/data 2024-07-03T14:23:03,720 copying galaxy/tools/data/__init__.py -> build/lib/galaxy/tools/data 2024-07-03T14:23:03,723 creating build/lib/galaxy/tools/actions 2024-07-03T14:23:03,725 copying galaxy/tools/actions/upload.py -> build/lib/galaxy/tools/actions 2024-07-03T14:23:03,727 copying galaxy/tools/actions/data_manager.py -> build/lib/galaxy/tools/actions 2024-07-03T14:23:03,729 copying galaxy/tools/actions/metadata.py -> build/lib/galaxy/tools/actions 2024-07-03T14:23:03,732 copying galaxy/tools/actions/upload_common.py -> build/lib/galaxy/tools/actions 2024-07-03T14:23:03,734 copying galaxy/tools/actions/model_operations.py -> build/lib/galaxy/tools/actions 2024-07-03T14:23:03,737 copying galaxy/tools/actions/__init__.py -> build/lib/galaxy/tools/actions 2024-07-03T14:23:03,741 copying galaxy/tools/actions/data_source.py -> build/lib/galaxy/tools/actions 2024-07-03T14:23:03,743 copying galaxy/tools/actions/history_imp_exp.py -> build/lib/galaxy/tools/actions 2024-07-03T14:23:03,746 creating build/lib/galaxy/tools/filters 2024-07-03T14:23:03,747 copying galaxy/tools/filters/__init__.py -> build/lib/galaxy/tools/filters 2024-07-03T14:23:03,750 creating build/lib/galaxy/tools/imp_exp 2024-07-03T14:23:03,751 copying galaxy/tools/imp_exp/export_history.py -> build/lib/galaxy/tools/imp_exp 2024-07-03T14:23:03,753 copying galaxy/tools/imp_exp/__init__.py -> build/lib/galaxy/tools/imp_exp 2024-07-03T14:23:03,756 copying galaxy/tools/imp_exp/unpack_tar_gz_archive.py -> build/lib/galaxy/tools/imp_exp 2024-07-03T14:23:03,758 creating build/lib/galaxy/tools/util 2024-07-03T14:23:03,759 copying galaxy/tools/util/maf_utilities.py -> build/lib/galaxy/tools/util 2024-07-03T14:23:03,762 copying galaxy/tools/util/__init__.py -> build/lib/galaxy/tools/util 2024-07-03T14:23:03,765 creating build/lib/galaxy/tools/data_manager 2024-07-03T14:23:03,766 copying galaxy/tools/data_manager/__init__.py -> build/lib/galaxy/tools/data_manager 2024-07-03T14:23:03,768 copying galaxy/tools/data_manager/manager.py -> build/lib/galaxy/tools/data_manager 2024-07-03T14:23:03,771 creating build/lib/galaxy/tools/error_reports 2024-07-03T14:23:03,772 copying galaxy/tools/error_reports/__init__.py -> build/lib/galaxy/tools/error_reports 2024-07-03T14:23:03,775 creating build/lib/galaxy/tools/search 2024-07-03T14:23:03,776 copying galaxy/tools/search/__init__.py -> build/lib/galaxy/tools/search 2024-07-03T14:23:03,780 creating build/lib/galaxy/tools/parameters 2024-07-03T14:23:03,781 copying galaxy/tools/parameters/sanitize.py -> build/lib/galaxy/tools/parameters 2024-07-03T14:23:03,783 copying galaxy/tools/parameters/wrapped.py -> build/lib/galaxy/tools/parameters 2024-07-03T14:23:03,786 copying galaxy/tools/parameters/meta.py -> build/lib/galaxy/tools/parameters 2024-07-03T14:23:03,789 copying galaxy/tools/parameters/cancelable_request.py -> build/lib/galaxy/tools/parameters 2024-07-03T14:23:03,791 copying galaxy/tools/parameters/workflow_utils.py -> build/lib/galaxy/tools/parameters 2024-07-03T14:23:03,793 copying galaxy/tools/parameters/validation.py -> build/lib/galaxy/tools/parameters 2024-07-03T14:23:03,796 copying galaxy/tools/parameters/__init__.py -> build/lib/galaxy/tools/parameters 2024-07-03T14:23:03,799 copying galaxy/tools/parameters/dynamic_options.py -> build/lib/galaxy/tools/parameters 2024-07-03T14:23:03,802 copying galaxy/tools/parameters/basic.py -> build/lib/galaxy/tools/parameters 2024-07-03T14:23:03,807 copying galaxy/tools/parameters/history_query.py -> build/lib/galaxy/tools/parameters 2024-07-03T14:23:03,809 copying galaxy/tools/parameters/input_translation.py -> build/lib/galaxy/tools/parameters 2024-07-03T14:23:03,811 copying galaxy/tools/parameters/dataset_matcher.py -> build/lib/galaxy/tools/parameters 2024-07-03T14:23:03,813 copying galaxy/tools/parameters/wrapped_json.py -> build/lib/galaxy/tools/parameters 2024-07-03T14:23:03,815 copying galaxy/tools/parameters/grouping.py -> build/lib/galaxy/tools/parameters 2024-07-03T14:23:03,819 creating build/lib/galaxy/tools/expressions 2024-07-03T14:23:03,820 copying galaxy/tools/expressions/util.py -> build/lib/galaxy/tools/expressions 2024-07-03T14:23:03,821 copying galaxy/tools/expressions/__init__.py -> build/lib/galaxy/tools/expressions 2024-07-03T14:23:03,823 copying galaxy/tools/expressions/evaluation.py -> build/lib/galaxy/tools/expressions 2024-07-03T14:23:03,825 copying galaxy/tools/expressions/script.py -> build/lib/galaxy/tools/expressions 2024-07-03T14:23:03,827 creating build/lib/galaxy/tools/util/galaxyops 2024-07-03T14:23:03,828 copying galaxy/tools/util/galaxyops/__init__.py -> build/lib/galaxy/tools/util/galaxyops 2024-07-03T14:23:03,830 creating build/lib/galaxy/tools/error_reports/plugins 2024-07-03T14:23:03,831 copying galaxy/tools/error_reports/plugins/base_git.py -> build/lib/galaxy/tools/error_reports/plugins 2024-07-03T14:23:03,833 copying galaxy/tools/error_reports/plugins/email.py -> build/lib/galaxy/tools/error_reports/plugins 2024-07-03T14:23:03,835 copying galaxy/tools/error_reports/plugins/__init__.py -> build/lib/galaxy/tools/error_reports/plugins 2024-07-03T14:23:03,837 copying galaxy/tools/error_reports/plugins/json.py -> build/lib/galaxy/tools/error_reports/plugins 2024-07-03T14:23:03,838 copying galaxy/tools/error_reports/plugins/slack.py -> build/lib/galaxy/tools/error_reports/plugins 2024-07-03T14:23:03,840 copying galaxy/tools/error_reports/plugins/sentry.py -> build/lib/galaxy/tools/error_reports/plugins 2024-07-03T14:23:03,842 copying galaxy/tools/error_reports/plugins/github.py -> build/lib/galaxy/tools/error_reports/plugins 2024-07-03T14:23:03,844 copying galaxy/tools/error_reports/plugins/influxdb.py -> build/lib/galaxy/tools/error_reports/plugins 2024-07-03T14:23:03,846 copying galaxy/tools/error_reports/plugins/gitlab.py -> build/lib/galaxy/tools/error_reports/plugins 2024-07-03T14:23:03,848 creating build/lib/galaxy/jobs/splitters 2024-07-03T14:23:03,849 copying galaxy/jobs/splitters/__init__.py -> build/lib/galaxy/jobs/splitters 2024-07-03T14:23:03,850 copying galaxy/jobs/splitters/basic.py -> build/lib/galaxy/jobs/splitters 2024-07-03T14:23:03,852 copying galaxy/jobs/splitters/multi.py -> build/lib/galaxy/jobs/splitters 2024-07-03T14:23:03,855 creating build/lib/galaxy/jobs/runners 2024-07-03T14:23:03,856 copying galaxy/jobs/runners/tasks.py -> build/lib/galaxy/jobs/runners 2024-07-03T14:23:03,858 copying galaxy/jobs/runners/pulsar.py -> build/lib/galaxy/jobs/runners 2024-07-03T14:23:03,861 copying galaxy/jobs/runners/pbs.py -> build/lib/galaxy/jobs/runners 2024-07-03T14:23:03,863 copying galaxy/jobs/runners/local.py -> build/lib/galaxy/jobs/runners 2024-07-03T14:23:03,866 copying galaxy/jobs/runners/kubernetes.py -> build/lib/galaxy/jobs/runners 2024-07-03T14:23:03,869 copying galaxy/jobs/runners/condor.py -> build/lib/galaxy/jobs/runners 2024-07-03T14:23:03,871 copying galaxy/jobs/runners/chronos.py -> build/lib/galaxy/jobs/runners 2024-07-03T14:23:03,873 copying galaxy/jobs/runners/__init__.py -> build/lib/galaxy/jobs/runners 2024-07-03T14:23:03,875 copying galaxy/jobs/runners/godocker.py -> build/lib/galaxy/jobs/runners 2024-07-03T14:23:03,878 copying galaxy/jobs/runners/drmaa.py -> build/lib/galaxy/jobs/runners 2024-07-03T14:23:03,880 copying galaxy/jobs/runners/aws.py -> build/lib/galaxy/jobs/runners 2024-07-03T14:23:03,882 copying galaxy/jobs/runners/cli.py -> build/lib/galaxy/jobs/runners 2024-07-03T14:23:03,885 copying galaxy/jobs/runners/univa.py -> build/lib/galaxy/jobs/runners 2024-07-03T14:23:03,888 copying galaxy/jobs/runners/slurm.py -> build/lib/galaxy/jobs/runners 2024-07-03T14:23:03,890 copying galaxy/jobs/runners/state_handler_factory.py -> build/lib/galaxy/jobs/runners 2024-07-03T14:23:03,892 creating build/lib/galaxy/jobs/rules 2024-07-03T14:23:03,893 copying galaxy/jobs/rules/__init__.py -> build/lib/galaxy/jobs/rules 2024-07-03T14:23:03,895 creating build/lib/galaxy/jobs/runners/util 2024-07-03T14:23:03,896 copying galaxy/jobs/runners/util/process_groups.py -> build/lib/galaxy/jobs/runners/util 2024-07-03T14:23:03,898 copying galaxy/jobs/runners/util/kill.py -> build/lib/galaxy/jobs/runners/util 2024-07-03T14:23:03,900 copying galaxy/jobs/runners/util/__init__.py -> build/lib/galaxy/jobs/runners/util 2024-07-03T14:23:03,901 copying galaxy/jobs/runners/util/sudo.py -> build/lib/galaxy/jobs/runners/util 2024-07-03T14:23:03,903 copying galaxy/jobs/runners/util/pykube_util.py -> build/lib/galaxy/jobs/runners/util 2024-07-03T14:23:03,905 copying galaxy/jobs/runners/util/fork_safe_write.py -> build/lib/galaxy/jobs/runners/util 2024-07-03T14:23:03,907 copying galaxy/jobs/runners/util/env.py -> build/lib/galaxy/jobs/runners/util 2024-07-03T14:23:03,909 copying galaxy/jobs/runners/util/external.py -> build/lib/galaxy/jobs/runners/util 2024-07-03T14:23:03,911 creating build/lib/galaxy/jobs/runners/state_handlers 2024-07-03T14:23:03,912 copying galaxy/jobs/runners/state_handlers/resubmit.py -> build/lib/galaxy/jobs/runners/state_handlers 2024-07-03T14:23:03,914 copying galaxy/jobs/runners/state_handlers/_safe_eval.py -> build/lib/galaxy/jobs/runners/state_handlers 2024-07-03T14:23:03,916 copying galaxy/jobs/runners/state_handlers/__init__.py -> build/lib/galaxy/jobs/runners/state_handlers 2024-07-03T14:23:03,918 creating build/lib/galaxy/jobs/runners/util/cli 2024-07-03T14:23:03,919 copying galaxy/jobs/runners/util/cli/__init__.py -> build/lib/galaxy/jobs/runners/util/cli 2024-07-03T14:23:03,921 copying galaxy/jobs/runners/util/cli/factory.py -> build/lib/galaxy/jobs/runners/util/cli 2024-07-03T14:23:03,923 creating build/lib/galaxy/jobs/runners/util/condor 2024-07-03T14:23:03,924 copying galaxy/jobs/runners/util/condor/__init__.py -> build/lib/galaxy/jobs/runners/util/condor 2024-07-03T14:23:03,926 creating build/lib/galaxy/jobs/runners/util/job_script 2024-07-03T14:23:03,927 copying galaxy/jobs/runners/util/job_script/__init__.py -> build/lib/galaxy/jobs/runners/util/job_script 2024-07-03T14:23:03,929 creating build/lib/galaxy/jobs/runners/util/cli/job 2024-07-03T14:23:03,930 copying galaxy/jobs/runners/util/cli/job/pbs.py -> build/lib/galaxy/jobs/runners/util/cli/job 2024-07-03T14:23:03,932 copying galaxy/jobs/runners/util/cli/job/torque.py -> build/lib/galaxy/jobs/runners/util/cli/job 2024-07-03T14:23:03,934 copying galaxy/jobs/runners/util/cli/job/__init__.py -> build/lib/galaxy/jobs/runners/util/cli/job 2024-07-03T14:23:03,936 copying galaxy/jobs/runners/util/cli/job/lsf.py -> build/lib/galaxy/jobs/runners/util/cli/job 2024-07-03T14:23:03,938 copying galaxy/jobs/runners/util/cli/job/slurm_torque.py -> build/lib/galaxy/jobs/runners/util/cli/job 2024-07-03T14:23:03,939 copying galaxy/jobs/runners/util/cli/job/slurm.py -> build/lib/galaxy/jobs/runners/util/cli/job 2024-07-03T14:23:03,941 creating build/lib/galaxy/jobs/runners/util/cli/shell 2024-07-03T14:23:03,942 copying galaxy/jobs/runners/util/cli/shell/local.py -> build/lib/galaxy/jobs/runners/util/cli/shell 2024-07-03T14:23:03,944 copying galaxy/jobs/runners/util/cli/shell/__init__.py -> build/lib/galaxy/jobs/runners/util/cli/shell 2024-07-03T14:23:03,945 copying galaxy/jobs/runners/util/cli/shell/rsh.py -> build/lib/galaxy/jobs/runners/util/cli/shell 2024-07-03T14:23:03,947 creating build/lib/galaxy/tool_shed/metadata 2024-07-03T14:23:03,948 copying galaxy/tool_shed/metadata/metadata_generator.py -> build/lib/galaxy/tool_shed/metadata 2024-07-03T14:23:03,951 copying galaxy/tool_shed/metadata/__init__.py -> build/lib/galaxy/tool_shed/metadata 2024-07-03T14:23:03,953 creating build/lib/galaxy/tool_shed/tools 2024-07-03T14:23:03,954 copying galaxy/tool_shed/tools/tool_validator.py -> build/lib/galaxy/tool_shed/tools 2024-07-03T14:23:03,957 copying galaxy/tool_shed/tools/__init__.py -> build/lib/galaxy/tool_shed/tools 2024-07-03T14:23:03,958 copying galaxy/tool_shed/tools/data_table_manager.py -> build/lib/galaxy/tool_shed/tools 2024-07-03T14:23:03,960 creating build/lib/galaxy/tool_shed/unittest_utils 2024-07-03T14:23:03,961 copying galaxy/tool_shed/unittest_utils/__init__.py -> build/lib/galaxy/tool_shed/unittest_utils 2024-07-03T14:23:03,964 creating build/lib/galaxy/tool_shed/util 2024-07-03T14:23:03,965 copying galaxy/tool_shed/util/metadata_util.py -> build/lib/galaxy/tool_shed/util 2024-07-03T14:23:03,967 copying galaxy/tool_shed/util/tool_util.py -> build/lib/galaxy/tool_shed/util 2024-07-03T14:23:03,969 copying galaxy/tool_shed/util/hg_util.py -> build/lib/galaxy/tool_shed/util 2024-07-03T14:23:03,971 copying galaxy/tool_shed/util/utility_container_manager.py -> build/lib/galaxy/tool_shed/util 2024-07-03T14:23:03,974 copying galaxy/tool_shed/util/basic_util.py -> build/lib/galaxy/tool_shed/util 2024-07-03T14:23:03,975 copying galaxy/tool_shed/util/__init__.py -> build/lib/galaxy/tool_shed/util 2024-07-03T14:23:03,977 copying galaxy/tool_shed/util/dependency_display.py -> build/lib/galaxy/tool_shed/util 2024-07-03T14:23:03,979 copying galaxy/tool_shed/util/shed_util_common.py -> build/lib/galaxy/tool_shed/util 2024-07-03T14:23:03,981 copying galaxy/tool_shed/util/repository_util.py -> build/lib/galaxy/tool_shed/util 2024-07-03T14:23:03,984 copying galaxy/tool_shed/util/tool_dependency_util.py -> build/lib/galaxy/tool_shed/util 2024-07-03T14:23:03,987 copying galaxy/tool_shed/util/container_util.py -> build/lib/galaxy/tool_shed/util 2024-07-03T14:23:03,989 creating build/lib/galaxy/tool_shed/galaxy_install 2024-07-03T14:23:03,990 copying galaxy/tool_shed/galaxy_install/client.py -> build/lib/galaxy/tool_shed/galaxy_install 2024-07-03T14:23:03,991 copying galaxy/tool_shed/galaxy_install/install_manager.py -> build/lib/galaxy/tool_shed/galaxy_install 2024-07-03T14:23:03,994 copying galaxy/tool_shed/galaxy_install/__init__.py -> build/lib/galaxy/tool_shed/galaxy_install 2024-07-03T14:23:03,995 copying galaxy/tool_shed/galaxy_install/update_repository_manager.py -> build/lib/galaxy/tool_shed/galaxy_install 2024-07-03T14:23:03,998 copying galaxy/tool_shed/galaxy_install/installed_repository_manager.py -> build/lib/galaxy/tool_shed/galaxy_install 2024-07-03T14:23:04,001 creating build/lib/galaxy/tool_shed/galaxy_install/metadata 2024-07-03T14:23:04,002 copying galaxy/tool_shed/galaxy_install/metadata/installed_repository_metadata_manager.py -> build/lib/galaxy/tool_shed/galaxy_install/metadata 2024-07-03T14:23:04,004 copying galaxy/tool_shed/galaxy_install/metadata/__init__.py -> build/lib/galaxy/tool_shed/galaxy_install/metadata 2024-07-03T14:23:04,006 creating build/lib/galaxy/tool_shed/galaxy_install/tools 2024-07-03T14:23:04,007 copying galaxy/tool_shed/galaxy_install/tools/data_manager.py -> build/lib/galaxy/tool_shed/galaxy_install/tools 2024-07-03T14:23:04,009 copying galaxy/tool_shed/galaxy_install/tools/__init__.py -> build/lib/galaxy/tool_shed/galaxy_install/tools 2024-07-03T14:23:04,011 copying galaxy/tool_shed/galaxy_install/tools/tool_panel_manager.py -> build/lib/galaxy/tool_shed/galaxy_install/tools 2024-07-03T14:23:04,014 creating build/lib/galaxy/tool_shed/galaxy_install/repository_dependencies 2024-07-03T14:23:04,014 copying galaxy/tool_shed/galaxy_install/repository_dependencies/__init__.py -> build/lib/galaxy/tool_shed/galaxy_install/repository_dependencies 2024-07-03T14:23:04,016 copying galaxy/tool_shed/galaxy_install/repository_dependencies/repository_dependency_manager.py -> build/lib/galaxy/tool_shed/galaxy_install/repository_dependencies 2024-07-03T14:23:04,019 creating build/lib/galaxy/workflow/schedulers 2024-07-03T14:23:04,020 copying galaxy/workflow/schedulers/__init__.py -> build/lib/galaxy/workflow/schedulers 2024-07-03T14:23:04,022 copying galaxy/workflow/schedulers/core.py -> build/lib/galaxy/workflow/schedulers 2024-07-03T14:23:04,024 creating build/lib/galaxy/workflow/resources 2024-07-03T14:23:04,025 copying galaxy/workflow/resources/__init__.py -> build/lib/galaxy/workflow/resources 2024-07-03T14:23:04,028 creating build/lib/galaxy/workflow/reports 2024-07-03T14:23:04,028 copying galaxy/workflow/reports/__init__.py -> build/lib/galaxy/workflow/reports 2024-07-03T14:23:04,031 creating build/lib/galaxy/workflow/refactor 2024-07-03T14:23:04,031 copying galaxy/workflow/refactor/execute.py -> build/lib/galaxy/workflow/refactor 2024-07-03T14:23:04,035 copying galaxy/workflow/refactor/__init__.py -> build/lib/galaxy/workflow/refactor 2024-07-03T14:23:04,036 copying galaxy/workflow/refactor/schema.py -> build/lib/galaxy/workflow/refactor 2024-07-03T14:23:04,039 creating build/lib/galaxy/workflow/reports/generators 2024-07-03T14:23:04,039 copying galaxy/workflow/reports/generators/__init__.py -> build/lib/galaxy/workflow/reports/generators 2024-07-03T14:23:04,041 copying galaxy/workflow/reports/generators/markdown.py -> build/lib/galaxy/workflow/reports/generators 2024-07-03T14:23:04,043 creating build/lib/tool_shed_client/schema 2024-07-03T14:23:04,044 copying tool_shed_client/schema/trs_service_info.py -> build/lib/tool_shed_client/schema 2024-07-03T14:23:04,046 copying tool_shed_client/schema/__init__.py -> build/lib/tool_shed_client/schema 2024-07-03T14:23:04,048 copying tool_shed_client/schema/trs.py -> build/lib/tool_shed_client/schema 2024-07-03T14:23:04,051 creating build/lib/galaxy_ext/metadata 2024-07-03T14:23:04,052 copying galaxy_ext/metadata/__init__.py -> build/lib/galaxy_ext/metadata 2024-07-03T14:23:04,054 copying galaxy_ext/metadata/set_metadata.py -> build/lib/galaxy_ext/metadata 2024-07-03T14:23:04,056 creating build/lib/galaxy_ext/container_monitor 2024-07-03T14:23:04,057 copying galaxy_ext/container_monitor/monitor.py -> build/lib/galaxy_ext/container_monitor 2024-07-03T14:23:04,058 copying galaxy_ext/container_monitor/__init__.py -> build/lib/galaxy_ext/container_monitor 2024-07-03T14:23:04,060 creating build/lib/galaxy_ext/expressions 2024-07-03T14:23:04,061 copying galaxy_ext/expressions/handle_job.py -> build/lib/galaxy_ext/expressions 2024-07-03T14:23:04,063 copying galaxy_ext/expressions/__init__.py -> build/lib/galaxy_ext/expressions 2024-07-03T14:23:04,064 running egg_info 2024-07-03T14:23:04,067 writing galaxy_app.egg-info/PKG-INFO 2024-07-03T14:23:04,073 writing dependency_links to galaxy_app.egg-info/dependency_links.txt 2024-07-03T14:23:04,075 writing entry points to galaxy_app.egg-info/entry_points.txt 2024-07-03T14:23:04,077 writing requirements to galaxy_app.egg-info/requires.txt 2024-07-03T14:23:04,078 writing top-level names to galaxy_app.egg-info/top_level.txt 2024-07-03T14:23:04,131 reading manifest file 'galaxy_app.egg-info/SOURCES.txt' 2024-07-03T14:23:04,146 reading manifest template 'MANIFEST.in' 2024-07-03T14:23:04,621 adding license file 'LICENSE' 2024-07-03T14:23:04,648 writing manifest file 'galaxy_app.egg-info/SOURCES.txt' 2024-07-03T14:23:04,653 /tmp/pip-build-env-95byei_z/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'galaxy.tools.bundled' is absent from the `packages` configuration. 2024-07-03T14:23:04,654 !! 2024-07-03T14:23:04,655 ******************************************************************************** 2024-07-03T14:23:04,656 ############################ 2024-07-03T14:23:04,656 # Package would be ignored # 2024-07-03T14:23:04,657 ############################ 2024-07-03T14:23:04,657 Python recognizes 'galaxy.tools.bundled' as an importable package[^1], 2024-07-03T14:23:04,658 but it is absent from setuptools' `packages` configuration. 2024-07-03T14:23:04,659 This leads to an ambiguous overall configuration. If you want to distribute this 2024-07-03T14:23:04,660 package, please make sure that 'galaxy.tools.bundled' is explicitly added 2024-07-03T14:23:04,660 to the `packages` configuration field. 2024-07-03T14:23:04,661 Alternatively, you can also rely on setuptools' discovery methods 2024-07-03T14:23:04,662 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-07-03T14:23:04,662 instead of `find_packages(...)`/`find:`). 2024-07-03T14:23:04,664 You can read more about "package discovery" on setuptools documentation page: 2024-07-03T14:23:04,665 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-07-03T14:23:04,666 If you don't want 'galaxy.tools.bundled' to be distributed and are 2024-07-03T14:23:04,666 already explicitly excluding 'galaxy.tools.bundled' via 2024-07-03T14:23:04,667 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-07-03T14:23:04,667 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-07-03T14:23:04,668 combination with a more fine grained `package-data` configuration. 2024-07-03T14:23:04,669 You can read more about "package data files" on setuptools documentation page: 2024-07-03T14:23:04,670 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-07-03T14:23:04,672 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-07-03T14:23:04,673 even if it does not contain any `.py` files. 2024-07-03T14:23:04,673 On the other hand, currently there is no concept of package data 2024-07-03T14:23:04,674 directory, all directories are treated like packages. 2024-07-03T14:23:04,674 ******************************************************************************** 2024-07-03T14:23:04,676 !! 2024-07-03T14:23:04,676 check.warn(importable) 2024-07-03T14:23:04,677 /tmp/pip-build-env-95byei_z/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'galaxy.tools.bundled.data_export' is absent from the `packages` configuration. 2024-07-03T14:23:04,677 !! 2024-07-03T14:23:04,678 ******************************************************************************** 2024-07-03T14:23:04,678 ############################ 2024-07-03T14:23:04,679 # Package would be ignored # 2024-07-03T14:23:04,679 ############################ 2024-07-03T14:23:04,679 Python recognizes 'galaxy.tools.bundled.data_export' as an importable package[^1], 2024-07-03T14:23:04,680 but it is absent from setuptools' `packages` configuration. 2024-07-03T14:23:04,681 This leads to an ambiguous overall configuration. If you want to distribute this 2024-07-03T14:23:04,681 package, please make sure that 'galaxy.tools.bundled.data_export' is explicitly added 2024-07-03T14:23:04,682 to the `packages` configuration field. 2024-07-03T14:23:04,683 Alternatively, you can also rely on setuptools' discovery methods 2024-07-03T14:23:04,683 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-07-03T14:23:04,683 instead of `find_packages(...)`/`find:`). 2024-07-03T14:23:04,684 You can read more about "package discovery" on setuptools documentation page: 2024-07-03T14:23:04,685 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-07-03T14:23:04,686 If you don't want 'galaxy.tools.bundled.data_export' to be distributed and are 2024-07-03T14:23:04,687 already explicitly excluding 'galaxy.tools.bundled.data_export' via 2024-07-03T14:23:04,687 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-07-03T14:23:04,688 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-07-03T14:23:04,688 combination with a more fine grained `package-data` configuration. 2024-07-03T14:23:04,689 You can read more about "package data files" on setuptools documentation page: 2024-07-03T14:23:04,690 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-07-03T14:23:04,692 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-07-03T14:23:04,692 even if it does not contain any `.py` files. 2024-07-03T14:23:04,693 On the other hand, currently there is no concept of package data 2024-07-03T14:23:04,693 directory, all directories are treated like packages. 2024-07-03T14:23:04,694 ******************************************************************************** 2024-07-03T14:23:04,695 !! 2024-07-03T14:23:04,695 check.warn(importable) 2024-07-03T14:23:04,696 /tmp/pip-build-env-95byei_z/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'galaxy.tools.bundled.data_source' is absent from the `packages` configuration. 2024-07-03T14:23:04,696 !! 2024-07-03T14:23:04,697 ******************************************************************************** 2024-07-03T14:23:04,698 ############################ 2024-07-03T14:23:04,698 # Package would be ignored # 2024-07-03T14:23:04,699 ############################ 2024-07-03T14:23:04,699 Python recognizes 'galaxy.tools.bundled.data_source' as an importable package[^1], 2024-07-03T14:23:04,700 but it is absent from setuptools' `packages` configuration. 2024-07-03T14:23:04,701 This leads to an ambiguous overall configuration. If you want to distribute this 2024-07-03T14:23:04,701 package, please make sure that 'galaxy.tools.bundled.data_source' is explicitly added 2024-07-03T14:23:04,702 to the `packages` configuration field. 2024-07-03T14:23:04,703 Alternatively, you can also rely on setuptools' discovery methods 2024-07-03T14:23:04,703 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-07-03T14:23:04,704 instead of `find_packages(...)`/`find:`). 2024-07-03T14:23:04,704 You can read more about "package discovery" on setuptools documentation page: 2024-07-03T14:23:04,705 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-07-03T14:23:04,706 If you don't want 'galaxy.tools.bundled.data_source' to be distributed and are 2024-07-03T14:23:04,707 already explicitly excluding 'galaxy.tools.bundled.data_source' via 2024-07-03T14:23:04,707 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-07-03T14:23:04,708 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-07-03T14:23:04,708 combination with a more fine grained `package-data` configuration. 2024-07-03T14:23:04,709 You can read more about "package data files" on setuptools documentation page: 2024-07-03T14:23:04,710 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-07-03T14:23:04,711 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-07-03T14:23:04,711 even if it does not contain any `.py` files. 2024-07-03T14:23:04,712 On the other hand, currently there is no concept of package data 2024-07-03T14:23:04,713 directory, all directories are treated like packages. 2024-07-03T14:23:04,713 ******************************************************************************** 2024-07-03T14:23:04,714 !! 2024-07-03T14:23:04,715 check.warn(importable) 2024-07-03T14:23:04,715 /tmp/pip-build-env-95byei_z/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'galaxy.tools.bundled.expression_tools' is absent from the `packages` configuration. 2024-07-03T14:23:04,715 !! 2024-07-03T14:23:04,717 ******************************************************************************** 2024-07-03T14:23:04,717 ############################ 2024-07-03T14:23:04,718 # Package would be ignored # 2024-07-03T14:23:04,718 ############################ 2024-07-03T14:23:04,719 Python recognizes 'galaxy.tools.bundled.expression_tools' as an importable package[^1], 2024-07-03T14:23:04,719 but it is absent from setuptools' `packages` configuration. 2024-07-03T14:23:04,720 This leads to an ambiguous overall configuration. If you want to distribute this 2024-07-03T14:23:04,721 package, please make sure that 'galaxy.tools.bundled.expression_tools' is explicitly added 2024-07-03T14:23:04,722 to the `packages` configuration field. 2024-07-03T14:23:04,723 Alternatively, you can also rely on setuptools' discovery methods 2024-07-03T14:23:04,723 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-07-03T14:23:04,724 instead of `find_packages(...)`/`find:`). 2024-07-03T14:23:04,725 You can read more about "package discovery" on setuptools documentation page: 2024-07-03T14:23:04,726 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-07-03T14:23:04,727 If you don't want 'galaxy.tools.bundled.expression_tools' to be distributed and are 2024-07-03T14:23:04,727 already explicitly excluding 'galaxy.tools.bundled.expression_tools' via 2024-07-03T14:23:04,728 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-07-03T14:23:04,728 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-07-03T14:23:04,729 combination with a more fine grained `package-data` configuration. 2024-07-03T14:23:04,730 You can read more about "package data files" on setuptools documentation page: 2024-07-03T14:23:04,731 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-07-03T14:23:04,733 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-07-03T14:23:04,733 even if it does not contain any `.py` files. 2024-07-03T14:23:04,733 On the other hand, currently there is no concept of package data 2024-07-03T14:23:04,734 directory, all directories are treated like packages. 2024-07-03T14:23:04,734 ******************************************************************************** 2024-07-03T14:23:04,735 !! 2024-07-03T14:23:04,735 check.warn(importable) 2024-07-03T14:23:04,736 /tmp/pip-build-env-95byei_z/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'galaxy.tools.bundled.extract' is absent from the `packages` configuration. 2024-07-03T14:23:04,736 !! 2024-07-03T14:23:04,737 ******************************************************************************** 2024-07-03T14:23:04,737 ############################ 2024-07-03T14:23:04,738 # Package would be ignored # 2024-07-03T14:23:04,738 ############################ 2024-07-03T14:23:04,739 Python recognizes 'galaxy.tools.bundled.extract' as an importable package[^1], 2024-07-03T14:23:04,739 but it is absent from setuptools' `packages` configuration. 2024-07-03T14:23:04,740 This leads to an ambiguous overall configuration. If you want to distribute this 2024-07-03T14:23:04,741 package, please make sure that 'galaxy.tools.bundled.extract' is explicitly added 2024-07-03T14:23:04,741 to the `packages` configuration field. 2024-07-03T14:23:04,742 Alternatively, you can also rely on setuptools' discovery methods 2024-07-03T14:23:04,742 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-07-03T14:23:04,743 instead of `find_packages(...)`/`find:`). 2024-07-03T14:23:04,744 You can read more about "package discovery" on setuptools documentation page: 2024-07-03T14:23:04,745 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-07-03T14:23:04,745 If you don't want 'galaxy.tools.bundled.extract' to be distributed and are 2024-07-03T14:23:04,746 already explicitly excluding 'galaxy.tools.bundled.extract' via 2024-07-03T14:23:04,746 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-07-03T14:23:04,747 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-07-03T14:23:04,747 combination with a more fine grained `package-data` configuration. 2024-07-03T14:23:04,748 You can read more about "package data files" on setuptools documentation page: 2024-07-03T14:23:04,749 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-07-03T14:23:04,751 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-07-03T14:23:04,751 even if it does not contain any `.py` files. 2024-07-03T14:23:04,752 On the other hand, currently there is no concept of package data 2024-07-03T14:23:04,752 directory, all directories are treated like packages. 2024-07-03T14:23:04,753 ******************************************************************************** 2024-07-03T14:23:04,754 !! 2024-07-03T14:23:04,754 check.warn(importable) 2024-07-03T14:23:04,755 /tmp/pip-build-env-95byei_z/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'galaxy.tools.bundled.filters' is absent from the `packages` configuration. 2024-07-03T14:23:04,755 !! 2024-07-03T14:23:04,756 ******************************************************************************** 2024-07-03T14:23:04,757 ############################ 2024-07-03T14:23:04,758 # Package would be ignored # 2024-07-03T14:23:04,758 ############################ 2024-07-03T14:23:04,758 Python recognizes 'galaxy.tools.bundled.filters' as an importable package[^1], 2024-07-03T14:23:04,759 but it is absent from setuptools' `packages` configuration. 2024-07-03T14:23:04,760 This leads to an ambiguous overall configuration. If you want to distribute this 2024-07-03T14:23:04,760 package, please make sure that 'galaxy.tools.bundled.filters' is explicitly added 2024-07-03T14:23:04,760 to the `packages` configuration field. 2024-07-03T14:23:04,761 Alternatively, you can also rely on setuptools' discovery methods 2024-07-03T14:23:04,762 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-07-03T14:23:04,762 instead of `find_packages(...)`/`find:`). 2024-07-03T14:23:04,763 You can read more about "package discovery" on setuptools documentation page: 2024-07-03T14:23:04,764 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-07-03T14:23:04,765 If you don't want 'galaxy.tools.bundled.filters' to be distributed and are 2024-07-03T14:23:04,765 already explicitly excluding 'galaxy.tools.bundled.filters' via 2024-07-03T14:23:04,766 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-07-03T14:23:04,766 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-07-03T14:23:04,767 combination with a more fine grained `package-data` configuration. 2024-07-03T14:23:04,767 You can read more about "package data files" on setuptools documentation page: 2024-07-03T14:23:04,769 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-07-03T14:23:04,770 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-07-03T14:23:04,770 even if it does not contain any `.py` files. 2024-07-03T14:23:04,771 On the other hand, currently there is no concept of package data 2024-07-03T14:23:04,771 directory, all directories are treated like packages. 2024-07-03T14:23:04,772 ******************************************************************************** 2024-07-03T14:23:04,773 !! 2024-07-03T14:23:04,773 check.warn(importable) 2024-07-03T14:23:04,774 /tmp/pip-build-env-95byei_z/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'galaxy.tools.bundled.filters.gff' is absent from the `packages` configuration. 2024-07-03T14:23:04,774 !! 2024-07-03T14:23:04,775 ******************************************************************************** 2024-07-03T14:23:04,776 ############################ 2024-07-03T14:23:04,776 # Package would be ignored # 2024-07-03T14:23:04,777 ############################ 2024-07-03T14:23:04,777 Python recognizes 'galaxy.tools.bundled.filters.gff' as an importable package[^1], 2024-07-03T14:23:04,778 but it is absent from setuptools' `packages` configuration. 2024-07-03T14:23:04,779 This leads to an ambiguous overall configuration. If you want to distribute this 2024-07-03T14:23:04,779 package, please make sure that 'galaxy.tools.bundled.filters.gff' is explicitly added 2024-07-03T14:23:04,780 to the `packages` configuration field. 2024-07-03T14:23:04,781 Alternatively, you can also rely on setuptools' discovery methods 2024-07-03T14:23:04,781 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-07-03T14:23:04,782 instead of `find_packages(...)`/`find:`). 2024-07-03T14:23:04,783 You can read more about "package discovery" on setuptools documentation page: 2024-07-03T14:23:04,784 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-07-03T14:23:04,785 If you don't want 'galaxy.tools.bundled.filters.gff' to be distributed and are 2024-07-03T14:23:04,785 already explicitly excluding 'galaxy.tools.bundled.filters.gff' via 2024-07-03T14:23:04,786 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-07-03T14:23:04,786 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-07-03T14:23:04,786 combination with a more fine grained `package-data` configuration. 2024-07-03T14:23:04,787 You can read more about "package data files" on setuptools documentation page: 2024-07-03T14:23:04,788 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-07-03T14:23:04,789 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-07-03T14:23:04,790 even if it does not contain any `.py` files. 2024-07-03T14:23:04,790 On the other hand, currently there is no concept of package data 2024-07-03T14:23:04,791 directory, all directories are treated like packages. 2024-07-03T14:23:04,791 ******************************************************************************** 2024-07-03T14:23:04,792 !! 2024-07-03T14:23:04,792 check.warn(importable) 2024-07-03T14:23:04,793 /tmp/pip-build-env-95byei_z/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'galaxy.tools.bundled.interactive' is absent from the `packages` configuration. 2024-07-03T14:23:04,793 !! 2024-07-03T14:23:04,794 ******************************************************************************** 2024-07-03T14:23:04,795 ############################ 2024-07-03T14:23:04,795 # Package would be ignored # 2024-07-03T14:23:04,796 ############################ 2024-07-03T14:23:04,796 Python recognizes 'galaxy.tools.bundled.interactive' as an importable package[^1], 2024-07-03T14:23:04,797 but it is absent from setuptools' `packages` configuration. 2024-07-03T14:23:04,798 This leads to an ambiguous overall configuration. If you want to distribute this 2024-07-03T14:23:04,798 package, please make sure that 'galaxy.tools.bundled.interactive' is explicitly added 2024-07-03T14:23:04,799 to the `packages` configuration field. 2024-07-03T14:23:04,800 Alternatively, you can also rely on setuptools' discovery methods 2024-07-03T14:23:04,800 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-07-03T14:23:04,801 instead of `find_packages(...)`/`find:`). 2024-07-03T14:23:04,802 You can read more about "package discovery" on setuptools documentation page: 2024-07-03T14:23:04,803 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-07-03T14:23:04,804 If you don't want 'galaxy.tools.bundled.interactive' to be distributed and are 2024-07-03T14:23:04,805 already explicitly excluding 'galaxy.tools.bundled.interactive' via 2024-07-03T14:23:04,805 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-07-03T14:23:04,806 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-07-03T14:23:04,806 combination with a more fine grained `package-data` configuration. 2024-07-03T14:23:04,807 You can read more about "package data files" on setuptools documentation page: 2024-07-03T14:23:04,808 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-07-03T14:23:04,810 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-07-03T14:23:04,810 even if it does not contain any `.py` files. 2024-07-03T14:23:04,811 On the other hand, currently there is no concept of package data 2024-07-03T14:23:04,811 directory, all directories are treated like packages. 2024-07-03T14:23:04,812 ******************************************************************************** 2024-07-03T14:23:04,813 !! 2024-07-03T14:23:04,813 check.warn(importable) 2024-07-03T14:23:04,814 /tmp/pip-build-env-95byei_z/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'galaxy.tools.bundled.maf' is absent from the `packages` configuration. 2024-07-03T14:23:04,814 !! 2024-07-03T14:23:04,815 ******************************************************************************** 2024-07-03T14:23:04,815 ############################ 2024-07-03T14:23:04,816 # Package would be ignored # 2024-07-03T14:23:04,816 ############################ 2024-07-03T14:23:04,817 Python recognizes 'galaxy.tools.bundled.maf' as an importable package[^1], 2024-07-03T14:23:04,817 but it is absent from setuptools' `packages` configuration. 2024-07-03T14:23:04,818 This leads to an ambiguous overall configuration. If you want to distribute this 2024-07-03T14:23:04,818 package, please make sure that 'galaxy.tools.bundled.maf' is explicitly added 2024-07-03T14:23:04,819 to the `packages` configuration field. 2024-07-03T14:23:04,820 Alternatively, you can also rely on setuptools' discovery methods 2024-07-03T14:23:04,820 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-07-03T14:23:04,821 instead of `find_packages(...)`/`find:`). 2024-07-03T14:23:04,821 You can read more about "package discovery" on setuptools documentation page: 2024-07-03T14:23:04,822 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-07-03T14:23:04,824 If you don't want 'galaxy.tools.bundled.maf' to be distributed and are 2024-07-03T14:23:04,824 already explicitly excluding 'galaxy.tools.bundled.maf' via 2024-07-03T14:23:04,825 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-07-03T14:23:04,825 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-07-03T14:23:04,826 combination with a more fine grained `package-data` configuration. 2024-07-03T14:23:04,827 You can read more about "package data files" on setuptools documentation page: 2024-07-03T14:23:04,828 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-07-03T14:23:04,829 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-07-03T14:23:04,830 even if it does not contain any `.py` files. 2024-07-03T14:23:04,830 On the other hand, currently there is no concept of package data 2024-07-03T14:23:04,831 directory, all directories are treated like packages. 2024-07-03T14:23:04,831 ******************************************************************************** 2024-07-03T14:23:04,832 !! 2024-07-03T14:23:04,833 check.warn(importable) 2024-07-03T14:23:04,833 /tmp/pip-build-env-95byei_z/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'galaxy.tools.bundled.meme' is absent from the `packages` configuration. 2024-07-03T14:23:04,834 !! 2024-07-03T14:23:04,835 ******************************************************************************** 2024-07-03T14:23:04,836 ############################ 2024-07-03T14:23:04,836 # Package would be ignored # 2024-07-03T14:23:04,837 ############################ 2024-07-03T14:23:04,837 Python recognizes 'galaxy.tools.bundled.meme' as an importable package[^1], 2024-07-03T14:23:04,838 but it is absent from setuptools' `packages` configuration. 2024-07-03T14:23:04,839 This leads to an ambiguous overall configuration. If you want to distribute this 2024-07-03T14:23:04,839 package, please make sure that 'galaxy.tools.bundled.meme' is explicitly added 2024-07-03T14:23:04,840 to the `packages` configuration field. 2024-07-03T14:23:04,841 Alternatively, you can also rely on setuptools' discovery methods 2024-07-03T14:23:04,841 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-07-03T14:23:04,842 instead of `find_packages(...)`/`find:`). 2024-07-03T14:23:04,843 You can read more about "package discovery" on setuptools documentation page: 2024-07-03T14:23:04,844 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-07-03T14:23:04,845 If you don't want 'galaxy.tools.bundled.meme' to be distributed and are 2024-07-03T14:23:04,845 already explicitly excluding 'galaxy.tools.bundled.meme' via 2024-07-03T14:23:04,845 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-07-03T14:23:04,846 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-07-03T14:23:04,846 combination with a more fine grained `package-data` configuration. 2024-07-03T14:23:04,847 You can read more about "package data files" on setuptools documentation page: 2024-07-03T14:23:04,848 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-07-03T14:23:04,849 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-07-03T14:23:04,849 even if it does not contain any `.py` files. 2024-07-03T14:23:04,850 On the other hand, currently there is no concept of package data 2024-07-03T14:23:04,850 directory, all directories are treated like packages. 2024-07-03T14:23:04,851 ******************************************************************************** 2024-07-03T14:23:04,852 !! 2024-07-03T14:23:04,852 check.warn(importable) 2024-07-03T14:23:04,853 /tmp/pip-build-env-95byei_z/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'galaxy.tools.bundled.metag_tools' is absent from the `packages` configuration. 2024-07-03T14:23:04,853 !! 2024-07-03T14:23:04,854 ******************************************************************************** 2024-07-03T14:23:04,855 ############################ 2024-07-03T14:23:04,855 # Package would be ignored # 2024-07-03T14:23:04,856 ############################ 2024-07-03T14:23:04,856 Python recognizes 'galaxy.tools.bundled.metag_tools' as an importable package[^1], 2024-07-03T14:23:04,857 but it is absent from setuptools' `packages` configuration. 2024-07-03T14:23:04,858 This leads to an ambiguous overall configuration. If you want to distribute this 2024-07-03T14:23:04,858 package, please make sure that 'galaxy.tools.bundled.metag_tools' is explicitly added 2024-07-03T14:23:04,859 to the `packages` configuration field. 2024-07-03T14:23:04,860 Alternatively, you can also rely on setuptools' discovery methods 2024-07-03T14:23:04,861 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-07-03T14:23:04,861 instead of `find_packages(...)`/`find:`). 2024-07-03T14:23:04,862 You can read more about "package discovery" on setuptools documentation page: 2024-07-03T14:23:04,863 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-07-03T14:23:04,865 If you don't want 'galaxy.tools.bundled.metag_tools' to be distributed and are 2024-07-03T14:23:04,865 already explicitly excluding 'galaxy.tools.bundled.metag_tools' via 2024-07-03T14:23:04,866 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-07-03T14:23:04,866 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-07-03T14:23:04,867 combination with a more fine grained `package-data` configuration. 2024-07-03T14:23:04,868 You can read more about "package data files" on setuptools documentation page: 2024-07-03T14:23:04,869 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-07-03T14:23:04,870 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-07-03T14:23:04,871 even if it does not contain any `.py` files. 2024-07-03T14:23:04,871 On the other hand, currently there is no concept of package data 2024-07-03T14:23:04,871 directory, all directories are treated like packages. 2024-07-03T14:23:04,872 ******************************************************************************** 2024-07-03T14:23:04,873 !! 2024-07-03T14:23:04,873 check.warn(importable) 2024-07-03T14:23:04,873 /tmp/pip-build-env-95byei_z/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'galaxy.tools.bundled.next_gen_conversion' is absent from the `packages` configuration. 2024-07-03T14:23:04,874 !! 2024-07-03T14:23:04,875 ******************************************************************************** 2024-07-03T14:23:04,875 ############################ 2024-07-03T14:23:04,875 # Package would be ignored # 2024-07-03T14:23:04,876 ############################ 2024-07-03T14:23:04,876 Python recognizes 'galaxy.tools.bundled.next_gen_conversion' as an importable package[^1], 2024-07-03T14:23:04,877 but it is absent from setuptools' `packages` configuration. 2024-07-03T14:23:04,878 This leads to an ambiguous overall configuration. If you want to distribute this 2024-07-03T14:23:04,878 package, please make sure that 'galaxy.tools.bundled.next_gen_conversion' is explicitly added 2024-07-03T14:23:04,879 to the `packages` configuration field. 2024-07-03T14:23:04,879 Alternatively, you can also rely on setuptools' discovery methods 2024-07-03T14:23:04,880 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-07-03T14:23:04,880 instead of `find_packages(...)`/`find:`). 2024-07-03T14:23:04,881 You can read more about "package discovery" on setuptools documentation page: 2024-07-03T14:23:04,882 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-07-03T14:23:04,883 If you don't want 'galaxy.tools.bundled.next_gen_conversion' to be distributed and are 2024-07-03T14:23:04,883 already explicitly excluding 'galaxy.tools.bundled.next_gen_conversion' via 2024-07-03T14:23:04,884 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-07-03T14:23:04,885 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-07-03T14:23:04,885 combination with a more fine grained `package-data` configuration. 2024-07-03T14:23:04,886 You can read more about "package data files" on setuptools documentation page: 2024-07-03T14:23:04,887 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-07-03T14:23:04,889 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-07-03T14:23:04,889 even if it does not contain any `.py` files. 2024-07-03T14:23:04,889 On the other hand, currently there is no concept of package data 2024-07-03T14:23:04,890 directory, all directories are treated like packages. 2024-07-03T14:23:04,890 ******************************************************************************** 2024-07-03T14:23:04,891 !! 2024-07-03T14:23:04,892 check.warn(importable) 2024-07-03T14:23:04,892 /tmp/pip-build-env-95byei_z/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'galaxy.tools.bundled.ngs_simulation' is absent from the `packages` configuration. 2024-07-03T14:23:04,893 !! 2024-07-03T14:23:04,894 ******************************************************************************** 2024-07-03T14:23:04,894 ############################ 2024-07-03T14:23:04,895 # Package would be ignored # 2024-07-03T14:23:04,895 ############################ 2024-07-03T14:23:04,896 Python recognizes 'galaxy.tools.bundled.ngs_simulation' as an importable package[^1], 2024-07-03T14:23:04,896 but it is absent from setuptools' `packages` configuration. 2024-07-03T14:23:04,897 This leads to an ambiguous overall configuration. If you want to distribute this 2024-07-03T14:23:04,897 package, please make sure that 'galaxy.tools.bundled.ngs_simulation' is explicitly added 2024-07-03T14:23:04,898 to the `packages` configuration field. 2024-07-03T14:23:04,899 Alternatively, you can also rely on setuptools' discovery methods 2024-07-03T14:23:04,899 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-07-03T14:23:04,900 instead of `find_packages(...)`/`find:`). 2024-07-03T14:23:04,901 You can read more about "package discovery" on setuptools documentation page: 2024-07-03T14:23:04,901 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-07-03T14:23:04,902 If you don't want 'galaxy.tools.bundled.ngs_simulation' to be distributed and are 2024-07-03T14:23:04,903 already explicitly excluding 'galaxy.tools.bundled.ngs_simulation' via 2024-07-03T14:23:04,903 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-07-03T14:23:04,904 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-07-03T14:23:04,904 combination with a more fine grained `package-data` configuration. 2024-07-03T14:23:04,905 You can read more about "package data files" on setuptools documentation page: 2024-07-03T14:23:04,906 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-07-03T14:23:04,907 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-07-03T14:23:04,908 even if it does not contain any `.py` files. 2024-07-03T14:23:04,908 On the other hand, currently there is no concept of package data 2024-07-03T14:23:04,909 directory, all directories are treated like packages. 2024-07-03T14:23:04,909 ******************************************************************************** 2024-07-03T14:23:04,910 !! 2024-07-03T14:23:04,910 check.warn(importable) 2024-07-03T14:23:04,911 /tmp/pip-build-env-95byei_z/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'galaxy.tools.bundled.phenotype_association' is absent from the `packages` configuration. 2024-07-03T14:23:04,911 !! 2024-07-03T14:23:04,912 ******************************************************************************** 2024-07-03T14:23:04,913 ############################ 2024-07-03T14:23:04,913 # Package would be ignored # 2024-07-03T14:23:04,914 ############################ 2024-07-03T14:23:04,914 Python recognizes 'galaxy.tools.bundled.phenotype_association' as an importable package[^1], 2024-07-03T14:23:04,915 but it is absent from setuptools' `packages` configuration. 2024-07-03T14:23:04,916 This leads to an ambiguous overall configuration. If you want to distribute this 2024-07-03T14:23:04,916 package, please make sure that 'galaxy.tools.bundled.phenotype_association' is explicitly added 2024-07-03T14:23:04,917 to the `packages` configuration field. 2024-07-03T14:23:04,918 Alternatively, you can also rely on setuptools' discovery methods 2024-07-03T14:23:04,919 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-07-03T14:23:04,919 instead of `find_packages(...)`/`find:`). 2024-07-03T14:23:04,920 You can read more about "package discovery" on setuptools documentation page: 2024-07-03T14:23:04,921 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-07-03T14:23:04,922 If you don't want 'galaxy.tools.bundled.phenotype_association' to be distributed and are 2024-07-03T14:23:04,923 already explicitly excluding 'galaxy.tools.bundled.phenotype_association' via 2024-07-03T14:23:04,923 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-07-03T14:23:04,924 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-07-03T14:23:04,924 combination with a more fine grained `package-data` configuration. 2024-07-03T14:23:04,925 You can read more about "package data files" on setuptools documentation page: 2024-07-03T14:23:04,926 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-07-03T14:23:04,927 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-07-03T14:23:04,928 even if it does not contain any `.py` files. 2024-07-03T14:23:04,928 On the other hand, currently there is no concept of package data 2024-07-03T14:23:04,929 directory, all directories are treated like packages. 2024-07-03T14:23:04,929 ******************************************************************************** 2024-07-03T14:23:04,930 !! 2024-07-03T14:23:04,930 check.warn(importable) 2024-07-03T14:23:04,931 /tmp/pip-build-env-95byei_z/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'galaxy.tools.bundled.plotting' is absent from the `packages` configuration. 2024-07-03T14:23:04,931 !! 2024-07-03T14:23:04,932 ******************************************************************************** 2024-07-03T14:23:04,933 ############################ 2024-07-03T14:23:04,933 # Package would be ignored # 2024-07-03T14:23:04,934 ############################ 2024-07-03T14:23:04,934 Python recognizes 'galaxy.tools.bundled.plotting' as an importable package[^1], 2024-07-03T14:23:04,934 but it is absent from setuptools' `packages` configuration. 2024-07-03T14:23:04,935 This leads to an ambiguous overall configuration. If you want to distribute this 2024-07-03T14:23:04,936 package, please make sure that 'galaxy.tools.bundled.plotting' is explicitly added 2024-07-03T14:23:04,937 to the `packages` configuration field. 2024-07-03T14:23:04,937 Alternatively, you can also rely on setuptools' discovery methods 2024-07-03T14:23:04,938 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-07-03T14:23:04,938 instead of `find_packages(...)`/`find:`). 2024-07-03T14:23:04,939 You can read more about "package discovery" on setuptools documentation page: 2024-07-03T14:23:04,940 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-07-03T14:23:04,941 If you don't want 'galaxy.tools.bundled.plotting' to be distributed and are 2024-07-03T14:23:04,942 already explicitly excluding 'galaxy.tools.bundled.plotting' via 2024-07-03T14:23:04,942 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-07-03T14:23:04,943 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-07-03T14:23:04,943 combination with a more fine grained `package-data` configuration. 2024-07-03T14:23:04,944 You can read more about "package data files" on setuptools documentation page: 2024-07-03T14:23:04,945 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-07-03T14:23:04,947 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-07-03T14:23:04,947 even if it does not contain any `.py` files. 2024-07-03T14:23:04,948 On the other hand, currently there is no concept of package data 2024-07-03T14:23:04,949 directory, all directories are treated like packages. 2024-07-03T14:23:04,949 ******************************************************************************** 2024-07-03T14:23:04,950 !! 2024-07-03T14:23:04,950 check.warn(importable) 2024-07-03T14:23:04,951 /tmp/pip-build-env-95byei_z/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'galaxy.tools.bundled.solid_tools' is absent from the `packages` configuration. 2024-07-03T14:23:04,951 !! 2024-07-03T14:23:04,952 ******************************************************************************** 2024-07-03T14:23:04,953 ############################ 2024-07-03T14:23:04,953 # Package would be ignored # 2024-07-03T14:23:04,954 ############################ 2024-07-03T14:23:04,954 Python recognizes 'galaxy.tools.bundled.solid_tools' as an importable package[^1], 2024-07-03T14:23:04,955 but it is absent from setuptools' `packages` configuration. 2024-07-03T14:23:04,955 This leads to an ambiguous overall configuration. If you want to distribute this 2024-07-03T14:23:04,956 package, please make sure that 'galaxy.tools.bundled.solid_tools' is explicitly added 2024-07-03T14:23:04,956 to the `packages` configuration field. 2024-07-03T14:23:04,957 Alternatively, you can also rely on setuptools' discovery methods 2024-07-03T14:23:04,957 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-07-03T14:23:04,958 instead of `find_packages(...)`/`find:`). 2024-07-03T14:23:04,959 You can read more about "package discovery" on setuptools documentation page: 2024-07-03T14:23:04,960 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-07-03T14:23:04,961 If you don't want 'galaxy.tools.bundled.solid_tools' to be distributed and are 2024-07-03T14:23:04,961 already explicitly excluding 'galaxy.tools.bundled.solid_tools' via 2024-07-03T14:23:04,962 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-07-03T14:23:04,962 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-07-03T14:23:04,963 combination with a more fine grained `package-data` configuration. 2024-07-03T14:23:04,964 You can read more about "package data files" on setuptools documentation page: 2024-07-03T14:23:04,965 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-07-03T14:23:04,966 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-07-03T14:23:04,967 even if it does not contain any `.py` files. 2024-07-03T14:23:04,967 On the other hand, currently there is no concept of package data 2024-07-03T14:23:04,968 directory, all directories are treated like packages. 2024-07-03T14:23:04,968 ******************************************************************************** 2024-07-03T14:23:04,969 !! 2024-07-03T14:23:04,970 check.warn(importable) 2024-07-03T14:23:04,970 /tmp/pip-build-env-95byei_z/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'galaxy.tools.bundled.sr_assembly' is absent from the `packages` configuration. 2024-07-03T14:23:04,971 !! 2024-07-03T14:23:04,972 ******************************************************************************** 2024-07-03T14:23:04,972 ############################ 2024-07-03T14:23:04,973 # Package would be ignored # 2024-07-03T14:23:04,973 ############################ 2024-07-03T14:23:04,974 Python recognizes 'galaxy.tools.bundled.sr_assembly' as an importable package[^1], 2024-07-03T14:23:04,974 but it is absent from setuptools' `packages` configuration. 2024-07-03T14:23:04,975 This leads to an ambiguous overall configuration. If you want to distribute this 2024-07-03T14:23:04,976 package, please make sure that 'galaxy.tools.bundled.sr_assembly' is explicitly added 2024-07-03T14:23:04,977 to the `packages` configuration field. 2024-07-03T14:23:04,978 Alternatively, you can also rely on setuptools' discovery methods 2024-07-03T14:23:04,978 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-07-03T14:23:04,978 instead of `find_packages(...)`/`find:`). 2024-07-03T14:23:04,979 You can read more about "package discovery" on setuptools documentation page: 2024-07-03T14:23:04,980 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-07-03T14:23:04,981 If you don't want 'galaxy.tools.bundled.sr_assembly' to be distributed and are 2024-07-03T14:23:04,981 already explicitly excluding 'galaxy.tools.bundled.sr_assembly' via 2024-07-03T14:23:04,982 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-07-03T14:23:04,982 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-07-03T14:23:04,983 combination with a more fine grained `package-data` configuration. 2024-07-03T14:23:04,984 You can read more about "package data files" on setuptools documentation page: 2024-07-03T14:23:04,985 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-07-03T14:23:04,986 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-07-03T14:23:04,986 even if it does not contain any `.py` files. 2024-07-03T14:23:04,987 On the other hand, currently there is no concept of package data 2024-07-03T14:23:04,987 directory, all directories are treated like packages. 2024-07-03T14:23:04,988 ******************************************************************************** 2024-07-03T14:23:04,989 !! 2024-07-03T14:23:04,989 check.warn(importable) 2024-07-03T14:23:04,989 /tmp/pip-build-env-95byei_z/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'galaxy.tools.bundled.sr_mapping' is absent from the `packages` configuration. 2024-07-03T14:23:04,990 !! 2024-07-03T14:23:04,991 ******************************************************************************** 2024-07-03T14:23:04,991 ############################ 2024-07-03T14:23:04,992 # Package would be ignored # 2024-07-03T14:23:04,992 ############################ 2024-07-03T14:23:04,993 Python recognizes 'galaxy.tools.bundled.sr_mapping' as an importable package[^1], 2024-07-03T14:23:04,993 but it is absent from setuptools' `packages` configuration. 2024-07-03T14:23:04,994 This leads to an ambiguous overall configuration. If you want to distribute this 2024-07-03T14:23:04,994 package, please make sure that 'galaxy.tools.bundled.sr_mapping' is explicitly added 2024-07-03T14:23:04,995 to the `packages` configuration field. 2024-07-03T14:23:04,996 Alternatively, you can also rely on setuptools' discovery methods 2024-07-03T14:23:04,997 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-07-03T14:23:04,997 instead of `find_packages(...)`/`find:`). 2024-07-03T14:23:04,998 You can read more about "package discovery" on setuptools documentation page: 2024-07-03T14:23:04,999 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-07-03T14:23:05,000 If you don't want 'galaxy.tools.bundled.sr_mapping' to be distributed and are 2024-07-03T14:23:05,001 already explicitly excluding 'galaxy.tools.bundled.sr_mapping' via 2024-07-03T14:23:05,001 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-07-03T14:23:05,002 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-07-03T14:23:05,002 combination with a more fine grained `package-data` configuration. 2024-07-03T14:23:05,004 You can read more about "package data files" on setuptools documentation page: 2024-07-03T14:23:05,005 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-07-03T14:23:05,006 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-07-03T14:23:05,006 even if it does not contain any `.py` files. 2024-07-03T14:23:05,007 On the other hand, currently there is no concept of package data 2024-07-03T14:23:05,007 directory, all directories are treated like packages. 2024-07-03T14:23:05,007 ******************************************************************************** 2024-07-03T14:23:05,008 !! 2024-07-03T14:23:05,009 check.warn(importable) 2024-07-03T14:23:05,009 /tmp/pip-build-env-95byei_z/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'galaxy.tools.bundled.stats' is absent from the `packages` configuration. 2024-07-03T14:23:05,009 !! 2024-07-03T14:23:05,010 ******************************************************************************** 2024-07-03T14:23:05,011 ############################ 2024-07-03T14:23:05,011 # Package would be ignored # 2024-07-03T14:23:05,011 ############################ 2024-07-03T14:23:05,012 Python recognizes 'galaxy.tools.bundled.stats' as an importable package[^1], 2024-07-03T14:23:05,013 but it is absent from setuptools' `packages` configuration. 2024-07-03T14:23:05,014 This leads to an ambiguous overall configuration. If you want to distribute this 2024-07-03T14:23:05,014 package, please make sure that 'galaxy.tools.bundled.stats' is explicitly added 2024-07-03T14:23:05,015 to the `packages` configuration field. 2024-07-03T14:23:05,016 Alternatively, you can also rely on setuptools' discovery methods 2024-07-03T14:23:05,016 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-07-03T14:23:05,017 instead of `find_packages(...)`/`find:`). 2024-07-03T14:23:05,018 You can read more about "package discovery" on setuptools documentation page: 2024-07-03T14:23:05,019 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-07-03T14:23:05,019 If you don't want 'galaxy.tools.bundled.stats' to be distributed and are 2024-07-03T14:23:05,021 already explicitly excluding 'galaxy.tools.bundled.stats' via 2024-07-03T14:23:05,021 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-07-03T14:23:05,022 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-07-03T14:23:05,022 combination with a more fine grained `package-data` configuration. 2024-07-03T14:23:05,023 You can read more about "package data files" on setuptools documentation page: 2024-07-03T14:23:05,024 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-07-03T14:23:05,025 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-07-03T14:23:05,026 even if it does not contain any `.py` files. 2024-07-03T14:23:05,026 On the other hand, currently there is no concept of package data 2024-07-03T14:23:05,027 directory, all directories are treated like packages. 2024-07-03T14:23:05,027 ******************************************************************************** 2024-07-03T14:23:05,028 !! 2024-07-03T14:23:05,029 check.warn(importable) 2024-07-03T14:23:05,029 copying galaxy/py.typed -> build/lib/galaxy 2024-07-03T14:23:05,030 copying tool_shed_client/py.typed -> build/lib/tool_shed_client 2024-07-03T14:23:05,030 copying galaxy_ext/py.typed -> build/lib/galaxy_ext 2024-07-03T14:23:05,031 copying galaxy/tools/apply_rules.xml -> build/lib/galaxy/tools 2024-07-03T14:23:05,031 copying galaxy/tools/build_list.xml -> build/lib/galaxy/tools 2024-07-03T14:23:05,032 copying galaxy/tools/build_list_1.2.0.xml -> build/lib/galaxy/tools 2024-07-03T14:23:05,033 copying galaxy/tools/cross_product_flat.xml -> build/lib/galaxy/tools 2024-07-03T14:23:05,033 copying galaxy/tools/cross_product_nested.xml -> build/lib/galaxy/tools 2024-07-03T14:23:05,033 copying galaxy/tools/data_fetch.xml -> build/lib/galaxy/tools 2024-07-03T14:23:05,034 copying galaxy/tools/duplicate_file_to_collection.xml -> build/lib/galaxy/tools 2024-07-03T14:23:05,034 copying galaxy/tools/extract_dataset.xml -> build/lib/galaxy/tools 2024-07-03T14:23:05,034 copying galaxy/tools/filter_empty_collection.xml -> build/lib/galaxy/tools 2024-07-03T14:23:05,035 copying galaxy/tools/filter_failed_collection.xml -> build/lib/galaxy/tools 2024-07-03T14:23:05,035 copying galaxy/tools/filter_from_file.xml -> build/lib/galaxy/tools 2024-07-03T14:23:05,036 copying galaxy/tools/flatten_collection.xml -> build/lib/galaxy/tools 2024-07-03T14:23:05,036 copying galaxy/tools/harmonize_two_collections_list.xml -> build/lib/galaxy/tools 2024-07-03T14:23:05,037 copying galaxy/tools/keep_success_collection.xml -> build/lib/galaxy/tools 2024-07-03T14:23:05,037 copying galaxy/tools/merge_collection.xml -> build/lib/galaxy/tools 2024-07-03T14:23:05,037 copying galaxy/tools/model_operation_macros.xml -> build/lib/galaxy/tools 2024-07-03T14:23:05,038 copying galaxy/tools/relabel_from_file.xml -> build/lib/galaxy/tools 2024-07-03T14:23:05,038 copying galaxy/tools/sort_collection_list.xml -> build/lib/galaxy/tools 2024-07-03T14:23:05,039 copying galaxy/tools/tag_collection_from_file.xml -> build/lib/galaxy/tools 2024-07-03T14:23:05,039 copying galaxy/tools/unzip_collection.xml -> build/lib/galaxy/tools 2024-07-03T14:23:05,040 copying galaxy/tools/zip_collection.xml -> build/lib/galaxy/tools 2024-07-03T14:23:05,040 creating build/lib/galaxy/tools/bundled 2024-07-03T14:23:05,041 copying galaxy/tools/bundled/__init__.py -> build/lib/galaxy/tools/bundled 2024-07-03T14:23:05,041 creating build/lib/galaxy/tools/bundled/data_export 2024-07-03T14:23:05,041 copying galaxy/tools/bundled/data_export/export_remote.py -> build/lib/galaxy/tools/bundled/data_export 2024-07-03T14:23:05,042 copying galaxy/tools/bundled/data_export/export_remote.xml -> build/lib/galaxy/tools/bundled/data_export 2024-07-03T14:23:05,042 copying galaxy/tools/bundled/data_export/send.py -> build/lib/galaxy/tools/bundled/data_export 2024-07-03T14:23:05,043 copying galaxy/tools/bundled/data_export/send.xml -> build/lib/galaxy/tools/bundled/data_export 2024-07-03T14:23:05,043 creating build/lib/galaxy/tools/bundled/data_source 2024-07-03T14:23:05,044 copying galaxy/tools/bundled/data_source/__init__.py -> build/lib/galaxy/tools/bundled/data_source 2024-07-03T14:23:05,044 copying galaxy/tools/bundled/data_source/access_libraries.xml -> build/lib/galaxy/tools/bundled/data_source 2024-07-03T14:23:05,045 copying galaxy/tools/bundled/data_source/biomart.xml -> build/lib/galaxy/tools/bundled/data_source 2024-07-03T14:23:05,045 copying galaxy/tools/bundled/data_source/biomart_test.xml -> build/lib/galaxy/tools/bundled/data_source 2024-07-03T14:23:05,046 copying galaxy/tools/bundled/data_source/cbi_rice_mart.xml -> build/lib/galaxy/tools/bundled/data_source 2024-07-03T14:23:05,046 copying galaxy/tools/bundled/data_source/data_source.py -> build/lib/galaxy/tools/bundled/data_source 2024-07-03T14:23:05,047 copying galaxy/tools/bundled/data_source/ebi_sra.xml -> build/lib/galaxy/tools/bundled/data_source 2024-07-03T14:23:05,047 copying galaxy/tools/bundled/data_source/eupathdb.xml -> build/lib/galaxy/tools/bundled/data_source 2024-07-03T14:23:05,048 copying galaxy/tools/bundled/data_source/fly_modencode.xml -> build/lib/galaxy/tools/bundled/data_source 2024-07-03T14:23:05,048 copying galaxy/tools/bundled/data_source/flymine.xml -> build/lib/galaxy/tools/bundled/data_source 2024-07-03T14:23:05,049 copying galaxy/tools/bundled/data_source/flymine_test.xml -> build/lib/galaxy/tools/bundled/data_source 2024-07-03T14:23:05,049 copying galaxy/tools/bundled/data_source/genbank.py -> build/lib/galaxy/tools/bundled/data_source 2024-07-03T14:23:05,050 copying galaxy/tools/bundled/data_source/genbank.xml -> build/lib/galaxy/tools/bundled/data_source 2024-07-03T14:23:05,050 copying galaxy/tools/bundled/data_source/gramene_mart.xml -> build/lib/galaxy/tools/bundled/data_source 2024-07-03T14:23:05,051 copying galaxy/tools/bundled/data_source/hapmapmart.xml -> build/lib/galaxy/tools/bundled/data_source 2024-07-03T14:23:05,051 copying galaxy/tools/bundled/data_source/hbvar.xml -> build/lib/galaxy/tools/bundled/data_source 2024-07-03T14:23:05,051 copying galaxy/tools/bundled/data_source/import.py -> build/lib/galaxy/tools/bundled/data_source 2024-07-03T14:23:05,052 copying galaxy/tools/bundled/data_source/import.xml -> build/lib/galaxy/tools/bundled/data_source 2024-07-03T14:23:05,052 copying galaxy/tools/bundled/data_source/intermine.xml -> build/lib/galaxy/tools/bundled/data_source 2024-07-03T14:23:05,053 copying galaxy/tools/bundled/data_source/metabolicmine.xml -> build/lib/galaxy/tools/bundled/data_source 2024-07-03T14:23:05,053 copying galaxy/tools/bundled/data_source/microbial_import.py -> build/lib/galaxy/tools/bundled/data_source 2024-07-03T14:23:05,054 copying galaxy/tools/bundled/data_source/microbial_import.xml -> build/lib/galaxy/tools/bundled/data_source 2024-07-03T14:23:05,054 copying galaxy/tools/bundled/data_source/microbial_import_code.py -> build/lib/galaxy/tools/bundled/data_source 2024-07-03T14:23:05,055 copying galaxy/tools/bundled/data_source/modmine.xml -> build/lib/galaxy/tools/bundled/data_source 2024-07-03T14:23:05,055 copying galaxy/tools/bundled/data_source/mousemine.xml -> build/lib/galaxy/tools/bundled/data_source 2024-07-03T14:23:05,055 copying galaxy/tools/bundled/data_source/ncbi_datasets.xml -> build/lib/galaxy/tools/bundled/data_source 2024-07-03T14:23:05,056 copying galaxy/tools/bundled/data_source/ratmine.xml -> build/lib/galaxy/tools/bundled/data_source 2024-07-03T14:23:05,057 copying galaxy/tools/bundled/data_source/sra.xml -> build/lib/galaxy/tools/bundled/data_source 2024-07-03T14:23:05,057 copying galaxy/tools/bundled/data_source/ucsc_tablebrowser.xml -> build/lib/galaxy/tools/bundled/data_source 2024-07-03T14:23:05,057 copying galaxy/tools/bundled/data_source/ucsc_tablebrowser_archaea.xml -> build/lib/galaxy/tools/bundled/data_source 2024-07-03T14:23:05,058 copying galaxy/tools/bundled/data_source/ucsc_tablebrowser_test.xml -> build/lib/galaxy/tools/bundled/data_source 2024-07-03T14:23:05,058 copying galaxy/tools/bundled/data_source/upload.py -> build/lib/galaxy/tools/bundled/data_source 2024-07-03T14:23:05,059 copying galaxy/tools/bundled/data_source/upload.xml -> build/lib/galaxy/tools/bundled/data_source 2024-07-03T14:23:05,059 copying galaxy/tools/bundled/data_source/worm_modencode.xml -> build/lib/galaxy/tools/bundled/data_source 2024-07-03T14:23:05,060 copying galaxy/tools/bundled/data_source/wormbase.xml -> build/lib/galaxy/tools/bundled/data_source 2024-07-03T14:23:05,061 copying galaxy/tools/bundled/data_source/wormbase_test.xml -> build/lib/galaxy/tools/bundled/data_source 2024-07-03T14:23:05,061 copying galaxy/tools/bundled/data_source/yeastmine.xml -> build/lib/galaxy/tools/bundled/data_source 2024-07-03T14:23:05,062 copying galaxy/tools/bundled/data_source/zebrafishmine.xml -> build/lib/galaxy/tools/bundled/data_source 2024-07-03T14:23:05,062 creating build/lib/galaxy/tools/bundled/expression_tools 2024-07-03T14:23:05,063 copying galaxy/tools/bundled/expression_tools/expression_macros.xml -> build/lib/galaxy/tools/bundled/expression_tools 2024-07-03T14:23:05,063 copying galaxy/tools/bundled/expression_tools/parse_values_from_file.xml -> build/lib/galaxy/tools/bundled/expression_tools 2024-07-03T14:23:05,064 copying galaxy/tools/bundled/expression_tools/pick_value.xml -> build/lib/galaxy/tools/bundled/expression_tools 2024-07-03T14:23:05,064 creating build/lib/galaxy/tools/bundled/extract 2024-07-03T14:23:05,065 copying galaxy/tools/bundled/extract/__init__.py -> build/lib/galaxy/tools/bundled/extract 2024-07-03T14:23:05,066 copying galaxy/tools/bundled/extract/extract_genomic_dna.py -> build/lib/galaxy/tools/bundled/extract 2024-07-03T14:23:05,066 copying galaxy/tools/bundled/extract/extract_genomic_dna.xml -> build/lib/galaxy/tools/bundled/extract 2024-07-03T14:23:05,066 copying galaxy/tools/bundled/extract/liftOver_wrapper.py -> build/lib/galaxy/tools/bundled/extract 2024-07-03T14:23:05,067 copying galaxy/tools/bundled/extract/liftOver_wrapper.xml -> build/lib/galaxy/tools/bundled/extract 2024-07-03T14:23:05,067 creating build/lib/galaxy/tools/bundled/filters 2024-07-03T14:23:05,068 copying galaxy/tools/bundled/filters/CreateInterval.pl -> build/lib/galaxy/tools/bundled/filters 2024-07-03T14:23:05,068 copying galaxy/tools/bundled/filters/CreateInterval.xml -> build/lib/galaxy/tools/bundled/filters 2024-07-03T14:23:05,068 copying galaxy/tools/bundled/filters/__init__.py -> build/lib/galaxy/tools/bundled/filters 2024-07-03T14:23:05,069 copying galaxy/tools/bundled/filters/axt_to_concat_fasta.py -> build/lib/galaxy/tools/bundled/filters 2024-07-03T14:23:05,069 copying galaxy/tools/bundled/filters/axt_to_concat_fasta.xml -> build/lib/galaxy/tools/bundled/filters 2024-07-03T14:23:05,070 copying galaxy/tools/bundled/filters/axt_to_fasta.py -> build/lib/galaxy/tools/bundled/filters 2024-07-03T14:23:05,070 copying galaxy/tools/bundled/filters/axt_to_fasta.xml -> build/lib/galaxy/tools/bundled/filters 2024-07-03T14:23:05,071 copying galaxy/tools/bundled/filters/axt_to_lav.py -> build/lib/galaxy/tools/bundled/filters 2024-07-03T14:23:05,071 copying galaxy/tools/bundled/filters/axt_to_lav.xml -> build/lib/galaxy/tools/bundled/filters 2024-07-03T14:23:05,071 copying galaxy/tools/bundled/filters/axt_to_lav_code.py -> build/lib/galaxy/tools/bundled/filters 2024-07-03T14:23:05,072 copying galaxy/tools/bundled/filters/bed2gff.xml -> build/lib/galaxy/tools/bundled/filters 2024-07-03T14:23:05,072 copying galaxy/tools/bundled/filters/bed_to_bigbed.xml -> build/lib/galaxy/tools/bundled/filters 2024-07-03T14:23:05,073 copying galaxy/tools/bundled/filters/bed_to_gff_converter.py -> build/lib/galaxy/tools/bundled/filters 2024-07-03T14:23:05,073 copying galaxy/tools/bundled/filters/catWrapper.py -> build/lib/galaxy/tools/bundled/filters 2024-07-03T14:23:05,074 copying galaxy/tools/bundled/filters/catWrapper.xml -> build/lib/galaxy/tools/bundled/filters 2024-07-03T14:23:05,074 copying galaxy/tools/bundled/filters/changeCase.pl -> build/lib/galaxy/tools/bundled/filters 2024-07-03T14:23:05,075 copying galaxy/tools/bundled/filters/changeCase.xml -> build/lib/galaxy/tools/bundled/filters 2024-07-03T14:23:05,075 copying galaxy/tools/bundled/filters/commWrapper.pl -> build/lib/galaxy/tools/bundled/filters 2024-07-03T14:23:05,075 copying galaxy/tools/bundled/filters/commWrapper.xml -> build/lib/galaxy/tools/bundled/filters 2024-07-03T14:23:05,076 copying galaxy/tools/bundled/filters/compare.xml -> build/lib/galaxy/tools/bundled/filters 2024-07-03T14:23:05,077 copying galaxy/tools/bundled/filters/condense_characters.pl -> build/lib/galaxy/tools/bundled/filters 2024-07-03T14:23:05,077 copying galaxy/tools/bundled/filters/condense_characters.xml -> build/lib/galaxy/tools/bundled/filters 2024-07-03T14:23:05,077 copying galaxy/tools/bundled/filters/convert_characters.py -> build/lib/galaxy/tools/bundled/filters 2024-07-03T14:23:05,078 copying galaxy/tools/bundled/filters/convert_characters.xml -> build/lib/galaxy/tools/bundled/filters 2024-07-03T14:23:05,078 copying galaxy/tools/bundled/filters/cutWrapper.pl -> build/lib/galaxy/tools/bundled/filters 2024-07-03T14:23:05,079 copying galaxy/tools/bundled/filters/cutWrapper.xml -> build/lib/galaxy/tools/bundled/filters 2024-07-03T14:23:05,079 copying galaxy/tools/bundled/filters/fileGrep.xml -> build/lib/galaxy/tools/bundled/filters 2024-07-03T14:23:05,080 copying galaxy/tools/bundled/filters/fixedValueColumn.pl -> build/lib/galaxy/tools/bundled/filters 2024-07-03T14:23:05,080 copying galaxy/tools/bundled/filters/fixedValueColumn.xml -> build/lib/galaxy/tools/bundled/filters 2024-07-03T14:23:05,081 copying galaxy/tools/bundled/filters/gff2bed.xml -> build/lib/galaxy/tools/bundled/filters 2024-07-03T14:23:05,081 copying galaxy/tools/bundled/filters/gff_to_bed_converter.py -> build/lib/galaxy/tools/bundled/filters 2024-07-03T14:23:05,082 copying galaxy/tools/bundled/filters/grep.py -> build/lib/galaxy/tools/bundled/filters 2024-07-03T14:23:05,082 copying galaxy/tools/bundled/filters/grep.xml -> build/lib/galaxy/tools/bundled/filters 2024-07-03T14:23:05,083 copying galaxy/tools/bundled/filters/grep_1.0.1.xml -> build/lib/galaxy/tools/bundled/filters 2024-07-03T14:23:05,083 copying galaxy/tools/bundled/filters/gtf2bedgraph.xml -> build/lib/galaxy/tools/bundled/filters 2024-07-03T14:23:05,083 copying galaxy/tools/bundled/filters/gtf_to_bedgraph_converter.py -> build/lib/galaxy/tools/bundled/filters 2024-07-03T14:23:05,084 copying galaxy/tools/bundled/filters/headWrapper.xml -> build/lib/galaxy/tools/bundled/filters 2024-07-03T14:23:05,084 copying galaxy/tools/bundled/filters/join.py -> build/lib/galaxy/tools/bundled/filters 2024-07-03T14:23:05,085 copying galaxy/tools/bundled/filters/joinWrapper.py -> build/lib/galaxy/tools/bundled/filters 2024-07-03T14:23:05,085 copying galaxy/tools/bundled/filters/joiner.xml -> build/lib/galaxy/tools/bundled/filters 2024-07-03T14:23:05,085 copying galaxy/tools/bundled/filters/joiner2.xml -> build/lib/galaxy/tools/bundled/filters 2024-07-03T14:23:05,086 copying galaxy/tools/bundled/filters/lav_to_bed.py -> build/lib/galaxy/tools/bundled/filters 2024-07-03T14:23:05,086 copying galaxy/tools/bundled/filters/lav_to_bed.xml -> build/lib/galaxy/tools/bundled/filters 2024-07-03T14:23:05,087 copying galaxy/tools/bundled/filters/lav_to_bed_code.py -> build/lib/galaxy/tools/bundled/filters 2024-07-03T14:23:05,087 copying galaxy/tools/bundled/filters/mergeCols.py -> build/lib/galaxy/tools/bundled/filters 2024-07-03T14:23:05,088 copying galaxy/tools/bundled/filters/mergeCols.xml -> build/lib/galaxy/tools/bundled/filters 2024-07-03T14:23:05,088 copying galaxy/tools/bundled/filters/pasteWrapper.pl -> build/lib/galaxy/tools/bundled/filters 2024-07-03T14:23:05,089 copying galaxy/tools/bundled/filters/pasteWrapper.xml -> build/lib/galaxy/tools/bundled/filters 2024-07-03T14:23:05,089 copying galaxy/tools/bundled/filters/random_lines_two_pass.py -> build/lib/galaxy/tools/bundled/filters 2024-07-03T14:23:05,090 copying galaxy/tools/bundled/filters/randomlines.py -> build/lib/galaxy/tools/bundled/filters 2024-07-03T14:23:05,090 copying galaxy/tools/bundled/filters/randomlines.xml -> build/lib/galaxy/tools/bundled/filters 2024-07-03T14:23:05,091 copying galaxy/tools/bundled/filters/remove_beginning.pl -> build/lib/galaxy/tools/bundled/filters 2024-07-03T14:23:05,091 copying galaxy/tools/bundled/filters/remove_beginning.xml -> build/lib/galaxy/tools/bundled/filters 2024-07-03T14:23:05,092 copying galaxy/tools/bundled/filters/secure_hash_message_digest.py -> build/lib/galaxy/tools/bundled/filters 2024-07-03T14:23:05,092 copying galaxy/tools/bundled/filters/secure_hash_message_digest.xml -> build/lib/galaxy/tools/bundled/filters 2024-07-03T14:23:05,093 copying galaxy/tools/bundled/filters/sff_extract.py -> build/lib/galaxy/tools/bundled/filters 2024-07-03T14:23:05,093 copying galaxy/tools/bundled/filters/sff_extractor.xml -> build/lib/galaxy/tools/bundled/filters 2024-07-03T14:23:05,094 copying galaxy/tools/bundled/filters/sorter.py -> build/lib/galaxy/tools/bundled/filters 2024-07-03T14:23:05,094 copying galaxy/tools/bundled/filters/sorter.xml -> build/lib/galaxy/tools/bundled/filters 2024-07-03T14:23:05,095 copying galaxy/tools/bundled/filters/tailWrapper.xml -> build/lib/galaxy/tools/bundled/filters 2024-07-03T14:23:05,095 copying galaxy/tools/bundled/filters/trimmer.py -> build/lib/galaxy/tools/bundled/filters 2024-07-03T14:23:05,096 copying galaxy/tools/bundled/filters/trimmer.xml -> build/lib/galaxy/tools/bundled/filters 2024-07-03T14:23:05,096 copying galaxy/tools/bundled/filters/ucsc_gene_bed_to_exon_bed.py -> build/lib/galaxy/tools/bundled/filters 2024-07-03T14:23:05,097 copying galaxy/tools/bundled/filters/ucsc_gene_bed_to_exon_bed.xml -> build/lib/galaxy/tools/bundled/filters 2024-07-03T14:23:05,097 copying galaxy/tools/bundled/filters/ucsc_gene_bed_to_intron_bed.py -> build/lib/galaxy/tools/bundled/filters 2024-07-03T14:23:05,098 copying galaxy/tools/bundled/filters/ucsc_gene_bed_to_intron_bed.xml -> build/lib/galaxy/tools/bundled/filters 2024-07-03T14:23:05,098 copying galaxy/tools/bundled/filters/ucsc_gene_table_to_intervals.py -> build/lib/galaxy/tools/bundled/filters 2024-07-03T14:23:05,099 copying galaxy/tools/bundled/filters/ucsc_gene_table_to_intervals.xml -> build/lib/galaxy/tools/bundled/filters 2024-07-03T14:23:05,099 copying galaxy/tools/bundled/filters/uniq.py -> build/lib/galaxy/tools/bundled/filters 2024-07-03T14:23:05,100 copying galaxy/tools/bundled/filters/uniq.xml -> build/lib/galaxy/tools/bundled/filters 2024-07-03T14:23:05,100 copying galaxy/tools/bundled/filters/wc_gnu.xml -> build/lib/galaxy/tools/bundled/filters 2024-07-03T14:23:05,101 copying galaxy/tools/bundled/filters/wig_to_bigwig.xml -> build/lib/galaxy/tools/bundled/filters 2024-07-03T14:23:05,102 copying galaxy/tools/bundled/filters/wiggle_to_simple.py -> build/lib/galaxy/tools/bundled/filters 2024-07-03T14:23:05,104 copying galaxy/tools/bundled/filters/wiggle_to_simple.xml -> build/lib/galaxy/tools/bundled/filters 2024-07-03T14:23:05,106 creating build/lib/galaxy/tools/bundled/filters/gff 2024-07-03T14:23:05,106 copying galaxy/tools/bundled/filters/gff/__init__.py -> build/lib/galaxy/tools/bundled/filters/gff 2024-07-03T14:23:05,108 copying galaxy/tools/bundled/filters/gff/extract_GFF_Features.py -> build/lib/galaxy/tools/bundled/filters/gff 2024-07-03T14:23:05,110 copying galaxy/tools/bundled/filters/gff/extract_GFF_Features.xml -> build/lib/galaxy/tools/bundled/filters/gff 2024-07-03T14:23:05,113 copying galaxy/tools/bundled/filters/gff/gff_filter_by_attribute.py -> build/lib/galaxy/tools/bundled/filters/gff 2024-07-03T14:23:05,115 copying galaxy/tools/bundled/filters/gff/gff_filter_by_attribute.xml -> build/lib/galaxy/tools/bundled/filters/gff 2024-07-03T14:23:05,117 copying galaxy/tools/bundled/filters/gff/gff_filter_by_feature_count.py -> build/lib/galaxy/tools/bundled/filters/gff 2024-07-03T14:23:05,119 copying galaxy/tools/bundled/filters/gff/gff_filter_by_feature_count.xml -> build/lib/galaxy/tools/bundled/filters/gff 2024-07-03T14:23:05,121 copying galaxy/tools/bundled/filters/gff/gtf_filter_by_attribute_values_list.py -> build/lib/galaxy/tools/bundled/filters/gff 2024-07-03T14:23:05,123 copying galaxy/tools/bundled/filters/gff/gtf_filter_by_attribute_values_list.xml -> build/lib/galaxy/tools/bundled/filters/gff 2024-07-03T14:23:05,125 creating build/lib/galaxy/tools/bundled/interactive 2024-07-03T14:23:05,126 copying galaxy/tools/bundled/interactive/default_notebook.ipynb -> build/lib/galaxy/tools/bundled/interactive 2024-07-03T14:23:05,129 copying galaxy/tools/bundled/interactive/interactivetool_askomics.xml -> build/lib/galaxy/tools/bundled/interactive 2024-07-03T14:23:05,131 copying galaxy/tools/bundled/interactive/interactivetool_bam_iobio.xml -> build/lib/galaxy/tools/bundled/interactive 2024-07-03T14:23:05,133 copying galaxy/tools/bundled/interactive/interactivetool_cellxgene_0.16.2.xml -> build/lib/galaxy/tools/bundled/interactive 2024-07-03T14:23:05,135 copying galaxy/tools/bundled/interactive/interactivetool_cellxgene_1.1.1.xml -> build/lib/galaxy/tools/bundled/interactive 2024-07-03T14:23:05,138 copying galaxy/tools/bundled/interactive/interactivetool_climate_notebook.xml -> build/lib/galaxy/tools/bundled/interactive 2024-07-03T14:23:05,140 copying galaxy/tools/bundled/interactive/interactivetool_ethercalc.xml -> build/lib/galaxy/tools/bundled/interactive 2024-07-03T14:23:05,142 copying galaxy/tools/bundled/interactive/interactivetool_geoexplorer.xml -> build/lib/galaxy/tools/bundled/interactive 2024-07-03T14:23:05,144 copying galaxy/tools/bundled/interactive/interactivetool_guacamole_desktop.xml -> build/lib/galaxy/tools/bundled/interactive 2024-07-03T14:23:05,146 copying galaxy/tools/bundled/interactive/interactivetool_hicbrowser.xml -> build/lib/galaxy/tools/bundled/interactive 2024-07-03T14:23:05,148 copying galaxy/tools/bundled/interactive/interactivetool_higlass.xml -> build/lib/galaxy/tools/bundled/interactive 2024-07-03T14:23:05,151 copying galaxy/tools/bundled/interactive/interactivetool_isee.xml -> build/lib/galaxy/tools/bundled/interactive 2024-07-03T14:23:05,153 copying galaxy/tools/bundled/interactive/interactivetool_jupyter_notebook.xml -> build/lib/galaxy/tools/bundled/interactive 2024-07-03T14:23:05,155 copying galaxy/tools/bundled/interactive/interactivetool_jupyter_notebook_1.0.0.xml -> build/lib/galaxy/tools/bundled/interactive 2024-07-03T14:23:05,158 copying galaxy/tools/bundled/interactive/interactivetool_metashark.xml -> build/lib/galaxy/tools/bundled/interactive 2024-07-03T14:23:05,160 copying galaxy/tools/bundled/interactive/interactivetool_mgnify_notebook.xml -> build/lib/galaxy/tools/bundled/interactive 2024-07-03T14:23:05,162 copying galaxy/tools/bundled/interactive/interactivetool_ml_jupyter_notebook.xml -> build/lib/galaxy/tools/bundled/interactive 2024-07-03T14:23:05,165 copying galaxy/tools/bundled/interactive/interactivetool_neo4j.xml -> build/lib/galaxy/tools/bundled/interactive 2024-07-03T14:23:05,167 copying galaxy/tools/bundled/interactive/interactivetool_openrefine.xml -> build/lib/galaxy/tools/bundled/interactive 2024-07-03T14:23:05,169 copying galaxy/tools/bundled/interactive/interactivetool_pangeo_notebook.xml -> build/lib/galaxy/tools/bundled/interactive 2024-07-03T14:23:05,171 copying galaxy/tools/bundled/interactive/interactivetool_panoply.xml -> build/lib/galaxy/tools/bundled/interactive 2024-07-03T14:23:05,173 copying galaxy/tools/bundled/interactive/interactivetool_paraview.xml -> build/lib/galaxy/tools/bundled/interactive 2024-07-03T14:23:05,175 copying galaxy/tools/bundled/interactive/interactivetool_pavian.xml -> build/lib/galaxy/tools/bundled/interactive 2024-07-03T14:23:05,177 copying galaxy/tools/bundled/interactive/interactivetool_phinch.xml -> build/lib/galaxy/tools/bundled/interactive 2024-07-03T14:23:05,179 copying galaxy/tools/bundled/interactive/interactivetool_pyiron.xml -> build/lib/galaxy/tools/bundled/interactive 2024-07-03T14:23:05,182 copying galaxy/tools/bundled/interactive/interactivetool_qiskit_jupyter_notebook.xml -> build/lib/galaxy/tools/bundled/interactive 2024-07-03T14:23:05,185 copying galaxy/tools/bundled/interactive/interactivetool_radiant.xml -> build/lib/galaxy/tools/bundled/interactive 2024-07-03T14:23:05,187 copying galaxy/tools/bundled/interactive/interactivetool_rstudio.xml -> build/lib/galaxy/tools/bundled/interactive 2024-07-03T14:23:05,189 copying galaxy/tools/bundled/interactive/interactivetool_simtext_app.xml -> build/lib/galaxy/tools/bundled/interactive 2024-07-03T14:23:05,191 copying galaxy/tools/bundled/interactive/interactivetool_vcf_iobio.xml -> build/lib/galaxy/tools/bundled/interactive 2024-07-03T14:23:05,193 copying galaxy/tools/bundled/interactive/interactivetool_vrm_editor.xml -> build/lib/galaxy/tools/bundled/interactive 2024-07-03T14:23:05,195 copying galaxy/tools/bundled/interactive/interactivetool_wallace.xml -> build/lib/galaxy/tools/bundled/interactive 2024-07-03T14:23:05,197 copying galaxy/tools/bundled/interactive/interactivetool_wilson.xml -> build/lib/galaxy/tools/bundled/interactive 2024-07-03T14:23:05,199 copying galaxy/tools/bundled/interactive/simtext_app.R -> build/lib/galaxy/tools/bundled/interactive 2024-07-03T14:23:05,202 creating build/lib/galaxy/tools/bundled/maf 2024-07-03T14:23:05,203 copying galaxy/tools/bundled/maf/__init__.py -> build/lib/galaxy/tools/bundled/maf 2024-07-03T14:23:05,205 copying galaxy/tools/bundled/maf/genebed_maf_to_fasta.xml -> build/lib/galaxy/tools/bundled/maf 2024-07-03T14:23:05,207 copying galaxy/tools/bundled/maf/interval2maf.py -> build/lib/galaxy/tools/bundled/maf 2024-07-03T14:23:05,209 copying galaxy/tools/bundled/maf/interval2maf.xml -> build/lib/galaxy/tools/bundled/maf 2024-07-03T14:23:05,212 copying galaxy/tools/bundled/maf/interval2maf_pairwise.xml -> build/lib/galaxy/tools/bundled/maf 2024-07-03T14:23:05,214 copying galaxy/tools/bundled/maf/interval_maf_to_merged_fasta.py -> build/lib/galaxy/tools/bundled/maf 2024-07-03T14:23:05,216 copying galaxy/tools/bundled/maf/interval_maf_to_merged_fasta.xml -> build/lib/galaxy/tools/bundled/maf 2024-07-03T14:23:05,218 copying galaxy/tools/bundled/maf/macros.xml -> build/lib/galaxy/tools/bundled/maf 2024-07-03T14:23:05,220 copying galaxy/tools/bundled/maf/maf_by_block_number.py -> build/lib/galaxy/tools/bundled/maf 2024-07-03T14:23:05,222 copying galaxy/tools/bundled/maf/maf_by_block_number.xml -> build/lib/galaxy/tools/bundled/maf 2024-07-03T14:23:05,224 copying galaxy/tools/bundled/maf/maf_filter.py -> build/lib/galaxy/tools/bundled/maf 2024-07-03T14:23:05,226 copying galaxy/tools/bundled/maf/maf_filter.xml -> build/lib/galaxy/tools/bundled/maf 2024-07-03T14:23:05,228 copying galaxy/tools/bundled/maf/maf_limit_size.py -> build/lib/galaxy/tools/bundled/maf 2024-07-03T14:23:05,230 copying galaxy/tools/bundled/maf/maf_limit_size.xml -> build/lib/galaxy/tools/bundled/maf 2024-07-03T14:23:05,232 copying galaxy/tools/bundled/maf/maf_limit_to_species.py -> build/lib/galaxy/tools/bundled/maf 2024-07-03T14:23:05,234 copying galaxy/tools/bundled/maf/maf_limit_to_species.xml -> build/lib/galaxy/tools/bundled/maf 2024-07-03T14:23:05,236 copying galaxy/tools/bundled/maf/maf_reverse_complement.py -> build/lib/galaxy/tools/bundled/maf 2024-07-03T14:23:05,238 copying galaxy/tools/bundled/maf/maf_reverse_complement.xml -> build/lib/galaxy/tools/bundled/maf 2024-07-03T14:23:05,240 copying galaxy/tools/bundled/maf/maf_split_by_species.py -> build/lib/galaxy/tools/bundled/maf 2024-07-03T14:23:05,242 copying galaxy/tools/bundled/maf/maf_split_by_species.xml -> build/lib/galaxy/tools/bundled/maf 2024-07-03T14:23:05,244 copying galaxy/tools/bundled/maf/maf_stats.py -> build/lib/galaxy/tools/bundled/maf 2024-07-03T14:23:05,246 copying galaxy/tools/bundled/maf/maf_stats.xml -> build/lib/galaxy/tools/bundled/maf 2024-07-03T14:23:05,248 copying galaxy/tools/bundled/maf/maf_thread_for_species.py -> build/lib/galaxy/tools/bundled/maf 2024-07-03T14:23:05,250 copying galaxy/tools/bundled/maf/maf_thread_for_species.xml -> build/lib/galaxy/tools/bundled/maf 2024-07-03T14:23:05,252 copying galaxy/tools/bundled/maf/maf_to_bed.py -> build/lib/galaxy/tools/bundled/maf 2024-07-03T14:23:05,254 copying galaxy/tools/bundled/maf/maf_to_bed.xml -> build/lib/galaxy/tools/bundled/maf 2024-07-03T14:23:05,257 copying galaxy/tools/bundled/maf/maf_to_bed_code.py -> build/lib/galaxy/tools/bundled/maf 2024-07-03T14:23:05,259 copying galaxy/tools/bundled/maf/maf_to_fasta.xml -> build/lib/galaxy/tools/bundled/maf 2024-07-03T14:23:05,261 copying galaxy/tools/bundled/maf/maf_to_fasta_concat.py -> build/lib/galaxy/tools/bundled/maf 2024-07-03T14:23:05,263 copying galaxy/tools/bundled/maf/maf_to_fasta_multiple_sets.py -> build/lib/galaxy/tools/bundled/maf 2024-07-03T14:23:05,265 copying galaxy/tools/bundled/maf/maf_to_interval.py -> build/lib/galaxy/tools/bundled/maf 2024-07-03T14:23:05,267 copying galaxy/tools/bundled/maf/maf_to_interval.xml -> build/lib/galaxy/tools/bundled/maf 2024-07-03T14:23:05,269 copying galaxy/tools/bundled/maf/vcf_to_maf_customtrack.py -> build/lib/galaxy/tools/bundled/maf 2024-07-03T14:23:05,271 copying galaxy/tools/bundled/maf/vcf_to_maf_customtrack.xml -> build/lib/galaxy/tools/bundled/maf 2024-07-03T14:23:05,274 creating build/lib/galaxy/tools/bundled/meme 2024-07-03T14:23:05,275 copying galaxy/tools/bundled/meme/__init__.py -> build/lib/galaxy/tools/bundled/meme 2024-07-03T14:23:05,277 copying galaxy/tools/bundled/meme/fimo.xml -> build/lib/galaxy/tools/bundled/meme 2024-07-03T14:23:05,279 copying galaxy/tools/bundled/meme/fimo_wrapper.py -> build/lib/galaxy/tools/bundled/meme 2024-07-03T14:23:05,281 copying galaxy/tools/bundled/meme/meme.xml -> build/lib/galaxy/tools/bundled/meme 2024-07-03T14:23:05,284 creating build/lib/galaxy/tools/bundled/metag_tools 2024-07-03T14:23:05,284 copying galaxy/tools/bundled/metag_tools/__init__.py -> build/lib/galaxy/tools/bundled/metag_tools 2024-07-03T14:23:05,286 copying galaxy/tools/bundled/metag_tools/blat_wrapper.py -> build/lib/galaxy/tools/bundled/metag_tools 2024-07-03T14:23:05,288 copying galaxy/tools/bundled/metag_tools/blat_wrapper.xml -> build/lib/galaxy/tools/bundled/metag_tools 2024-07-03T14:23:05,290 copying galaxy/tools/bundled/metag_tools/shrimp_color_wrapper.py -> build/lib/galaxy/tools/bundled/metag_tools 2024-07-03T14:23:05,292 copying galaxy/tools/bundled/metag_tools/shrimp_color_wrapper.xml -> build/lib/galaxy/tools/bundled/metag_tools 2024-07-03T14:23:05,294 copying galaxy/tools/bundled/metag_tools/shrimp_wrapper.py -> build/lib/galaxy/tools/bundled/metag_tools 2024-07-03T14:23:05,297 copying galaxy/tools/bundled/metag_tools/shrimp_wrapper.xml -> build/lib/galaxy/tools/bundled/metag_tools 2024-07-03T14:23:05,299 creating build/lib/galaxy/tools/bundled/next_gen_conversion 2024-07-03T14:23:05,300 copying galaxy/tools/bundled/next_gen_conversion/bwa_solid2fastq_modified.pl -> build/lib/galaxy/tools/bundled/next_gen_conversion 2024-07-03T14:23:05,302 copying galaxy/tools/bundled/next_gen_conversion/fastq_conversions.py -> build/lib/galaxy/tools/bundled/next_gen_conversion 2024-07-03T14:23:05,304 copying galaxy/tools/bundled/next_gen_conversion/fastq_conversions.xml -> build/lib/galaxy/tools/bundled/next_gen_conversion 2024-07-03T14:23:05,306 copying galaxy/tools/bundled/next_gen_conversion/fastq_gen_conv.py -> build/lib/galaxy/tools/bundled/next_gen_conversion 2024-07-03T14:23:05,309 copying galaxy/tools/bundled/next_gen_conversion/fastq_gen_conv.xml -> build/lib/galaxy/tools/bundled/next_gen_conversion 2024-07-03T14:23:05,311 copying galaxy/tools/bundled/next_gen_conversion/solid2fastq.py -> build/lib/galaxy/tools/bundled/next_gen_conversion 2024-07-03T14:23:05,313 copying galaxy/tools/bundled/next_gen_conversion/solid2fastq.xml -> build/lib/galaxy/tools/bundled/next_gen_conversion 2024-07-03T14:23:05,315 copying galaxy/tools/bundled/next_gen_conversion/solid_to_fastq.py -> build/lib/galaxy/tools/bundled/next_gen_conversion 2024-07-03T14:23:05,317 copying galaxy/tools/bundled/next_gen_conversion/solid_to_fastq.xml -> build/lib/galaxy/tools/bundled/next_gen_conversion 2024-07-03T14:23:05,319 creating build/lib/galaxy/tools/bundled/ngs_simulation 2024-07-03T14:23:05,320 copying galaxy/tools/bundled/ngs_simulation/__init__.py -> build/lib/galaxy/tools/bundled/ngs_simulation 2024-07-03T14:23:05,322 copying galaxy/tools/bundled/ngs_simulation/ngs_simulation.py -> build/lib/galaxy/tools/bundled/ngs_simulation 2024-07-03T14:23:05,324 copying galaxy/tools/bundled/ngs_simulation/ngs_simulation.xml -> build/lib/galaxy/tools/bundled/ngs_simulation 2024-07-03T14:23:05,327 creating build/lib/galaxy/tools/bundled/phenotype_association 2024-07-03T14:23:05,328 copying galaxy/tools/bundled/phenotype_association/BEAM2_wrapper.sh -> build/lib/galaxy/tools/bundled/phenotype_association 2024-07-03T14:23:05,330 copying galaxy/tools/bundled/phenotype_association/__init__.py -> build/lib/galaxy/tools/bundled/phenotype_association 2024-07-03T14:23:05,331 copying galaxy/tools/bundled/phenotype_association/beam.xml -> build/lib/galaxy/tools/bundled/phenotype_association 2024-07-03T14:23:05,334 copying galaxy/tools/bundled/phenotype_association/gpass.pl -> build/lib/galaxy/tools/bundled/phenotype_association 2024-07-03T14:23:05,337 copying galaxy/tools/bundled/phenotype_association/gpass.xml -> build/lib/galaxy/tools/bundled/phenotype_association 2024-07-03T14:23:05,340 copying galaxy/tools/bundled/phenotype_association/ldtools.xml -> build/lib/galaxy/tools/bundled/phenotype_association 2024-07-03T14:23:05,342 copying galaxy/tools/bundled/phenotype_association/ldtools_wrapper.sh -> build/lib/galaxy/tools/bundled/phenotype_association 2024-07-03T14:23:05,345 copying galaxy/tools/bundled/phenotype_association/linkToDavid.pl -> build/lib/galaxy/tools/bundled/phenotype_association 2024-07-03T14:23:05,347 copying galaxy/tools/bundled/phenotype_association/linkToDavid.xml -> build/lib/galaxy/tools/bundled/phenotype_association 2024-07-03T14:23:05,350 copying galaxy/tools/bundled/phenotype_association/linkToGProfile.pl -> build/lib/galaxy/tools/bundled/phenotype_association 2024-07-03T14:23:05,353 copying galaxy/tools/bundled/phenotype_association/linkToGProfile.xml -> build/lib/galaxy/tools/bundled/phenotype_association 2024-07-03T14:23:05,355 copying galaxy/tools/bundled/phenotype_association/lped_to_geno.pl -> build/lib/galaxy/tools/bundled/phenotype_association 2024-07-03T14:23:05,357 copying galaxy/tools/bundled/phenotype_association/lps.xml -> build/lib/galaxy/tools/bundled/phenotype_association 2024-07-03T14:23:05,361 copying galaxy/tools/bundled/phenotype_association/lps_tool_wrapper.sh -> build/lib/galaxy/tools/bundled/phenotype_association 2024-07-03T14:23:05,363 copying galaxy/tools/bundled/phenotype_association/master2gd_snp.pl -> build/lib/galaxy/tools/bundled/phenotype_association 2024-07-03T14:23:05,366 copying galaxy/tools/bundled/phenotype_association/master2gd_snp.xml -> build/lib/galaxy/tools/bundled/phenotype_association 2024-07-03T14:23:05,368 copying galaxy/tools/bundled/phenotype_association/master2pg.pl -> build/lib/galaxy/tools/bundled/phenotype_association 2024-07-03T14:23:05,371 copying galaxy/tools/bundled/phenotype_association/master2pg.xml -> build/lib/galaxy/tools/bundled/phenotype_association 2024-07-03T14:23:05,373 copying galaxy/tools/bundled/phenotype_association/mergeSnps.pl -> build/lib/galaxy/tools/bundled/phenotype_association 2024-07-03T14:23:05,376 copying galaxy/tools/bundled/phenotype_association/pagetag.py -> build/lib/galaxy/tools/bundled/phenotype_association 2024-07-03T14:23:05,379 copying galaxy/tools/bundled/phenotype_association/pass.xml -> build/lib/galaxy/tools/bundled/phenotype_association 2024-07-03T14:23:05,381 copying galaxy/tools/bundled/phenotype_association/pass_wrapper.sh -> build/lib/galaxy/tools/bundled/phenotype_association 2024-07-03T14:23:05,384 copying galaxy/tools/bundled/phenotype_association/senatag.py -> build/lib/galaxy/tools/bundled/phenotype_association 2024-07-03T14:23:05,387 copying galaxy/tools/bundled/phenotype_association/sift.xml -> build/lib/galaxy/tools/bundled/phenotype_association 2024-07-03T14:23:05,390 copying galaxy/tools/bundled/phenotype_association/sift_variants_wrapper.sh -> build/lib/galaxy/tools/bundled/phenotype_association 2024-07-03T14:23:05,393 creating build/lib/galaxy/tools/bundled/plotting 2024-07-03T14:23:05,394 copying galaxy/tools/bundled/plotting/bar_chart.py -> build/lib/galaxy/tools/bundled/plotting 2024-07-03T14:23:05,397 copying galaxy/tools/bundled/plotting/bar_chart.xml -> build/lib/galaxy/tools/bundled/plotting 2024-07-03T14:23:05,399 copying galaxy/tools/bundled/plotting/boxplot.xml -> build/lib/galaxy/tools/bundled/plotting 2024-07-03T14:23:05,402 creating build/lib/galaxy/tools/bundled/solid_tools 2024-07-03T14:23:05,403 copying galaxy/tools/bundled/solid_tools/__init__.py -> build/lib/galaxy/tools/bundled/solid_tools 2024-07-03T14:23:05,406 copying galaxy/tools/bundled/solid_tools/maq_cs_wrapper.py -> build/lib/galaxy/tools/bundled/solid_tools 2024-07-03T14:23:05,409 copying galaxy/tools/bundled/solid_tools/maq_cs_wrapper.xml -> build/lib/galaxy/tools/bundled/solid_tools 2024-07-03T14:23:05,412 copying galaxy/tools/bundled/solid_tools/maq_cs_wrapper_code.py -> build/lib/galaxy/tools/bundled/solid_tools 2024-07-03T14:23:05,414 copying galaxy/tools/bundled/solid_tools/qualsolid_boxplot_graph.sh -> build/lib/galaxy/tools/bundled/solid_tools 2024-07-03T14:23:05,417 copying galaxy/tools/bundled/solid_tools/solid_qual_boxplot.xml -> build/lib/galaxy/tools/bundled/solid_tools 2024-07-03T14:23:05,419 copying galaxy/tools/bundled/solid_tools/solid_qual_stats.py -> build/lib/galaxy/tools/bundled/solid_tools 2024-07-03T14:23:05,422 copying galaxy/tools/bundled/solid_tools/solid_qual_stats.xml -> build/lib/galaxy/tools/bundled/solid_tools 2024-07-03T14:23:05,424 creating build/lib/galaxy/tools/bundled/sr_assembly 2024-07-03T14:23:05,425 copying galaxy/tools/bundled/sr_assembly/__init__.py -> build/lib/galaxy/tools/bundled/sr_assembly 2024-07-03T14:23:05,427 copying galaxy/tools/bundled/sr_assembly/velvetg.xml -> build/lib/galaxy/tools/bundled/sr_assembly 2024-07-03T14:23:05,430 copying galaxy/tools/bundled/sr_assembly/velvetg_wrapper.py -> build/lib/galaxy/tools/bundled/sr_assembly 2024-07-03T14:23:05,432 copying galaxy/tools/bundled/sr_assembly/velveth.xml -> build/lib/galaxy/tools/bundled/sr_assembly 2024-07-03T14:23:05,434 copying galaxy/tools/bundled/sr_assembly/velveth_wrapper.py -> build/lib/galaxy/tools/bundled/sr_assembly 2024-07-03T14:23:05,436 creating build/lib/galaxy/tools/bundled/sr_mapping 2024-07-03T14:23:05,437 copying galaxy/tools/bundled/sr_mapping/PerM.xml -> build/lib/galaxy/tools/bundled/sr_mapping 2024-07-03T14:23:05,440 copying galaxy/tools/bundled/sr_mapping/__init__.py -> build/lib/galaxy/tools/bundled/sr_mapping 2024-07-03T14:23:05,441 copying galaxy/tools/bundled/sr_mapping/bfast_wrapper.py -> build/lib/galaxy/tools/bundled/sr_mapping 2024-07-03T14:23:05,444 copying galaxy/tools/bundled/sr_mapping/bfast_wrapper.xml -> build/lib/galaxy/tools/bundled/sr_mapping 2024-07-03T14:23:05,447 copying galaxy/tools/bundled/sr_mapping/fastq_statistics.xml -> build/lib/galaxy/tools/bundled/sr_mapping 2024-07-03T14:23:05,449 copying galaxy/tools/bundled/sr_mapping/mosaik.xml -> build/lib/galaxy/tools/bundled/sr_mapping 2024-07-03T14:23:05,451 copying galaxy/tools/bundled/sr_mapping/srma_wrapper.py -> build/lib/galaxy/tools/bundled/sr_mapping 2024-07-03T14:23:05,453 copying galaxy/tools/bundled/sr_mapping/srma_wrapper.xml -> build/lib/galaxy/tools/bundled/sr_mapping 2024-07-03T14:23:05,456 creating build/lib/galaxy/tools/bundled/stats 2024-07-03T14:23:05,457 copying galaxy/tools/bundled/stats/__init__.py -> build/lib/galaxy/tools/bundled/stats 2024-07-03T14:23:05,458 copying galaxy/tools/bundled/stats/aggregate_binned_scores_in_intervals.xml -> build/lib/galaxy/tools/bundled/stats 2024-07-03T14:23:05,461 copying galaxy/tools/bundled/stats/aggregate_scores_in_intervals.py -> build/lib/galaxy/tools/bundled/stats 2024-07-03T14:23:05,463 copying galaxy/tools/bundled/stats/filtering.py -> build/lib/galaxy/tools/bundled/stats 2024-07-03T14:23:05,465 copying galaxy/tools/bundled/stats/filtering.xml -> build/lib/galaxy/tools/bundled/stats 2024-07-03T14:23:05,467 copying galaxy/tools/bundled/stats/filtering_1_1_0.xml -> build/lib/galaxy/tools/bundled/stats 2024-07-03T14:23:05,469 copying galaxy/tools/bundled/stats/grouping.py -> build/lib/galaxy/tools/bundled/stats 2024-07-03T14:23:05,472 copying galaxy/tools/bundled/stats/grouping.xml -> build/lib/galaxy/tools/bundled/stats 2024-07-03T14:23:05,474 copying galaxy/tools/bundled/stats/gsummary.py -> build/lib/galaxy/tools/bundled/stats 2024-07-03T14:23:05,476 copying galaxy/tools/bundled/stats/gsummary.xml -> build/lib/galaxy/tools/bundled/stats 2024-07-03T14:23:05,478 copying galaxy/tools/bundled/stats/r_wrapper.sh -> build/lib/galaxy/tools/bundled/stats 2024-07-03T14:23:05,480 copying galaxy/dependencies/conditional-requirements.txt -> build/lib/galaxy/dependencies 2024-07-03T14:23:05,482 copying galaxy/dependencies/dev-requirements.txt -> build/lib/galaxy/dependencies 2024-07-03T14:23:05,485 copying galaxy/dependencies/lint-requirements.txt -> build/lib/galaxy/dependencies 2024-07-03T14:23:05,487 copying galaxy/dependencies/pinned-lint-requirements.txt -> build/lib/galaxy/dependencies 2024-07-03T14:23:05,489 copying galaxy/dependencies/pinned-requirements.txt -> build/lib/galaxy/dependencies 2024-07-03T14:23:05,491 copying galaxy/dependencies/pinned-typecheck-requirements.txt -> build/lib/galaxy/dependencies 2024-07-03T14:23:05,494 copying galaxy/dependencies/update.sh -> build/lib/galaxy/dependencies 2024-07-03T14:23:05,496 copying galaxy/dependencies/update_lint_requirements.sh -> build/lib/galaxy/dependencies 2024-07-03T14:23:05,498 copying galaxy/managers/licenses.json -> build/lib/galaxy/managers 2024-07-03T14:23:05,502 copying galaxy/managers/markdown_export_base.css -> build/lib/galaxy/managers 2024-07-03T14:23:05,504 copying galaxy/carbon_emissions/carbon_intensity.csv -> build/lib/galaxy/carbon_emissions 2024-07-03T14:23:05,508 copying galaxy/tools/imp_exp/exp_history_to_archive.xml -> build/lib/galaxy/tools/imp_exp 2024-07-03T14:23:05,509 copying galaxy/tools/imp_exp/exp_history_to_uri.xml -> build/lib/galaxy/tools/imp_exp 2024-07-03T14:23:05,511 copying galaxy/tools/imp_exp/imp_history_from_archive.xml -> build/lib/galaxy/tools/imp_exp 2024-07-03T14:23:05,513 copying galaxy/tools/expressions/cwlNodeEngine.js -> build/lib/galaxy/tools/expressions 2024-07-03T14:23:05,515 copying galaxy/jobs/runners/util/job_script/CLUSTER_SLOTS_STATEMENT.sh -> build/lib/galaxy/jobs/runners/util/job_script 2024-07-03T14:23:05,517 copying galaxy/jobs/runners/util/job_script/DEFAULT_JOB_FILE_TEMPLATE.sh -> build/lib/galaxy/jobs/runners/util/job_script 2024-07-03T14:23:05,520 copying galaxy/jobs/runners/util/job_script/MEMORY_STATEMENT_TEMPLATE.sh -> build/lib/galaxy/jobs/runners/util/job_script 2024-07-03T14:23:05,522 copying galaxy/workflow/resources/example.py.sample -> build/lib/galaxy/workflow/resources 2024-07-03T14:23:05,558 installing to build/bdist.linux-armv7l/wheel 2024-07-03T14:23:05,559 running install 2024-07-03T14:23:05,583 running install_lib 2024-07-03T14:23:05,589 creating build/bdist.linux-armv7l 2024-07-03T14:23:05,589 creating build/bdist.linux-armv7l/wheel 2024-07-03T14:23:05,591 creating build/bdist.linux-armv7l/wheel/galaxy 2024-07-03T14:23:05,593 creating build/bdist.linux-armv7l/wheel/galaxy/short_term_storage 2024-07-03T14:23:05,594 copying build/lib/galaxy/short_term_storage/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/short_term_storage 2024-07-03T14:23:05,596 creating build/bdist.linux-armv7l/wheel/galaxy/visualization 2024-07-03T14:23:05,598 creating build/bdist.linux-armv7l/wheel/galaxy/visualization/tracks 2024-07-03T14:23:05,599 copying build/lib/galaxy/visualization/tracks/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/visualization/tracks 2024-07-03T14:23:05,601 creating build/bdist.linux-armv7l/wheel/galaxy/visualization/genome 2024-07-03T14:23:05,602 copying build/lib/galaxy/visualization/genome/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/visualization/genome 2024-07-03T14:23:05,603 copying build/lib/galaxy/visualization/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/visualization 2024-07-03T14:23:05,605 copying build/lib/galaxy/visualization/genomes.py -> build/bdist.linux-armv7l/wheel/galaxy/visualization 2024-07-03T14:23:05,608 creating build/bdist.linux-armv7l/wheel/galaxy/visualization/plugins 2024-07-03T14:23:05,609 copying build/lib/galaxy/visualization/plugins/plugin.py -> build/bdist.linux-armv7l/wheel/galaxy/visualization/plugins 2024-07-03T14:23:05,611 copying build/lib/galaxy/visualization/plugins/utils.py -> build/bdist.linux-armv7l/wheel/galaxy/visualization/plugins 2024-07-03T14:23:05,613 copying build/lib/galaxy/visualization/plugins/config_parser.py -> build/bdist.linux-armv7l/wheel/galaxy/visualization/plugins 2024-07-03T14:23:05,616 copying build/lib/galaxy/visualization/plugins/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/visualization/plugins 2024-07-03T14:23:05,617 copying build/lib/galaxy/visualization/plugins/resource_parser.py -> build/bdist.linux-armv7l/wheel/galaxy/visualization/plugins 2024-07-03T14:23:05,619 copying build/lib/galaxy/visualization/plugins/registry.py -> build/bdist.linux-armv7l/wheel/galaxy/visualization/plugins 2024-07-03T14:23:05,622 creating build/bdist.linux-armv7l/wheel/galaxy/visualization/data_providers 2024-07-03T14:23:05,623 copying build/lib/galaxy/visualization/data_providers/cigar.py -> build/bdist.linux-armv7l/wheel/galaxy/visualization/data_providers 2024-07-03T14:23:05,625 copying build/lib/galaxy/visualization/data_providers/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/visualization/data_providers 2024-07-03T14:23:05,626 copying build/lib/galaxy/visualization/data_providers/basic.py -> build/bdist.linux-armv7l/wheel/galaxy/visualization/data_providers 2024-07-03T14:23:05,629 creating build/bdist.linux-armv7l/wheel/galaxy/visualization/data_providers/phyloviz 2024-07-03T14:23:05,629 copying build/lib/galaxy/visualization/data_providers/phyloviz/newickparser.py -> build/bdist.linux-armv7l/wheel/galaxy/visualization/data_providers/phyloviz 2024-07-03T14:23:05,632 copying build/lib/galaxy/visualization/data_providers/phyloviz/baseparser.py -> build/bdist.linux-armv7l/wheel/galaxy/visualization/data_providers/phyloviz 2024-07-03T14:23:05,634 copying build/lib/galaxy/visualization/data_providers/phyloviz/phyloxmlparser.py -> build/bdist.linux-armv7l/wheel/galaxy/visualization/data_providers/phyloviz 2024-07-03T14:23:05,636 copying build/lib/galaxy/visualization/data_providers/phyloviz/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/visualization/data_providers/phyloviz 2024-07-03T14:23:05,638 copying build/lib/galaxy/visualization/data_providers/phyloviz/nexusparser.py -> build/bdist.linux-armv7l/wheel/galaxy/visualization/data_providers/phyloviz 2024-07-03T14:23:05,639 copying build/lib/galaxy/visualization/data_providers/registry.py -> build/bdist.linux-armv7l/wheel/galaxy/visualization/data_providers 2024-07-03T14:23:05,642 copying build/lib/galaxy/visualization/data_providers/genome.py -> build/bdist.linux-armv7l/wheel/galaxy/visualization/data_providers 2024-07-03T14:23:05,645 creating build/bdist.linux-armv7l/wheel/galaxy/app_unittest_utils 2024-07-03T14:23:05,646 copying build/lib/galaxy/app_unittest_utils/tools_support.py -> build/bdist.linux-armv7l/wheel/galaxy/app_unittest_utils 2024-07-03T14:23:05,649 copying build/lib/galaxy/app_unittest_utils/galaxy_mock.py -> build/bdist.linux-armv7l/wheel/galaxy/app_unittest_utils 2024-07-03T14:23:05,651 copying build/lib/galaxy/app_unittest_utils/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/app_unittest_utils 2024-07-03T14:23:05,653 copying build/lib/galaxy/app_unittest_utils/toolbox_support.py -> build/bdist.linux-armv7l/wheel/galaxy/app_unittest_utils 2024-07-03T14:23:05,655 copying build/lib/galaxy/app.py -> build/bdist.linux-armv7l/wheel/galaxy 2024-07-03T14:23:05,658 creating build/bdist.linux-armv7l/wheel/galaxy/tools 2024-07-03T14:23:05,659 copying build/lib/galaxy/tools/extract_dataset.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools 2024-07-03T14:23:05,664 copying build/lib/galaxy/tools/cache.py -> build/bdist.linux-armv7l/wheel/galaxy/tools 2024-07-03T14:23:05,666 copying build/lib/galaxy/tools/build_list.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools 2024-07-03T14:23:05,668 copying build/lib/galaxy/tools/cross_product_nested.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools 2024-07-03T14:23:05,670 copying build/lib/galaxy/tools/model_operation_macros.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools 2024-07-03T14:23:05,672 creating build/bdist.linux-armv7l/wheel/galaxy/tools/data 2024-07-03T14:23:05,673 copying build/lib/galaxy/tools/data/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/data 2024-07-03T14:23:05,676 copying build/lib/galaxy/tools/test.py -> build/bdist.linux-armv7l/wheel/galaxy/tools 2024-07-03T14:23:05,679 copying build/lib/galaxy/tools/recommendations.py -> build/bdist.linux-armv7l/wheel/galaxy/tools 2024-07-03T14:23:05,681 copying build/lib/galaxy/tools/repositories.py -> build/bdist.linux-armv7l/wheel/galaxy/tools 2024-07-03T14:23:05,683 copying build/lib/galaxy/tools/apply_rules.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools 2024-07-03T14:23:05,685 creating build/bdist.linux-armv7l/wheel/galaxy/tools/actions 2024-07-03T14:23:05,686 copying build/lib/galaxy/tools/actions/upload.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/actions 2024-07-03T14:23:05,689 copying build/lib/galaxy/tools/actions/data_manager.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/actions 2024-07-03T14:23:05,690 copying build/lib/galaxy/tools/actions/metadata.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/actions 2024-07-03T14:23:05,693 copying build/lib/galaxy/tools/actions/upload_common.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/actions 2024-07-03T14:23:05,695 copying build/lib/galaxy/tools/actions/model_operations.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/actions 2024-07-03T14:23:05,697 copying build/lib/galaxy/tools/actions/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/actions 2024-07-03T14:23:05,700 copying build/lib/galaxy/tools/actions/data_source.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/actions 2024-07-03T14:23:05,702 copying build/lib/galaxy/tools/actions/history_imp_exp.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/actions 2024-07-03T14:23:05,704 copying build/lib/galaxy/tools/unzip_collection.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools 2024-07-03T14:23:05,706 copying build/lib/galaxy/tools/build_list_1.2.0.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools 2024-07-03T14:23:05,708 copying build/lib/galaxy/tools/filter_failed_collection.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools 2024-07-03T14:23:05,710 copying build/lib/galaxy/tools/execute.py -> build/bdist.linux-armv7l/wheel/galaxy/tools 2024-07-03T14:23:05,713 creating build/bdist.linux-armv7l/wheel/galaxy/tools/filters 2024-07-03T14:23:05,714 copying build/lib/galaxy/tools/filters/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/filters 2024-07-03T14:23:05,716 copying build/lib/galaxy/tools/duplicate_file_to_collection.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools 2024-07-03T14:23:05,718 copying build/lib/galaxy/tools/errors.py -> build/bdist.linux-armv7l/wheel/galaxy/tools 2024-07-03T14:23:05,720 copying build/lib/galaxy/tools/data_fetch.py -> build/bdist.linux-armv7l/wheel/galaxy/tools 2024-07-03T14:23:05,723 copying build/lib/galaxy/tools/exception_handling.py -> build/bdist.linux-armv7l/wheel/galaxy/tools 2024-07-03T14:23:05,725 creating build/bdist.linux-armv7l/wheel/galaxy/tools/imp_exp 2024-07-03T14:23:05,726 copying build/lib/galaxy/tools/imp_exp/imp_history_from_archive.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/imp_exp 2024-07-03T14:23:05,728 copying build/lib/galaxy/tools/imp_exp/export_history.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/imp_exp 2024-07-03T14:23:05,729 copying build/lib/galaxy/tools/imp_exp/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/imp_exp 2024-07-03T14:23:05,731 copying build/lib/galaxy/tools/imp_exp/exp_history_to_uri.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/imp_exp 2024-07-03T14:23:05,733 copying build/lib/galaxy/tools/imp_exp/unpack_tar_gz_archive.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/imp_exp 2024-07-03T14:23:05,735 copying build/lib/galaxy/tools/imp_exp/exp_history_to_archive.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/imp_exp 2024-07-03T14:23:05,737 copying build/lib/galaxy/tools/zip_collection.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools 2024-07-03T14:23:05,739 copying build/lib/galaxy/tools/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tools 2024-07-03T14:23:05,744 copying build/lib/galaxy/tools/biotools.py -> build/bdist.linux-armv7l/wheel/galaxy/tools 2024-07-03T14:23:05,746 copying build/lib/galaxy/tools/special_tools.py -> build/bdist.linux-armv7l/wheel/galaxy/tools 2024-07-03T14:23:05,748 creating build/bdist.linux-armv7l/wheel/galaxy/tools/util 2024-07-03T14:23:05,749 copying build/lib/galaxy/tools/util/maf_utilities.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/util 2024-07-03T14:23:05,753 creating build/bdist.linux-armv7l/wheel/galaxy/tools/util/galaxyops 2024-07-03T14:23:05,754 copying build/lib/galaxy/tools/util/galaxyops/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/util/galaxyops 2024-07-03T14:23:05,756 copying build/lib/galaxy/tools/util/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/util 2024-07-03T14:23:05,758 creating build/bdist.linux-armv7l/wheel/galaxy/tools/data_manager 2024-07-03T14:23:05,759 copying build/lib/galaxy/tools/data_manager/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/data_manager 2024-07-03T14:23:05,761 copying build/lib/galaxy/tools/data_manager/manager.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/data_manager 2024-07-03T14:23:05,764 copying build/lib/galaxy/tools/wrappers.py -> build/bdist.linux-armv7l/wheel/galaxy/tools 2024-07-03T14:23:05,766 copying build/lib/galaxy/tools/evaluation.py -> build/bdist.linux-armv7l/wheel/galaxy/tools 2024-07-03T14:23:05,769 copying build/lib/galaxy/tools/harmonize_two_collections_list.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools 2024-07-03T14:23:05,771 copying build/lib/galaxy/tools/filter_from_file.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools 2024-07-03T14:23:05,773 copying build/lib/galaxy/tools/relabel_from_file.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools 2024-07-03T14:23:05,775 copying build/lib/galaxy/tools/merge_collection.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools 2024-07-03T14:23:05,778 creating build/bdist.linux-armv7l/wheel/galaxy/tools/error_reports 2024-07-03T14:23:05,779 copying build/lib/galaxy/tools/error_reports/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/error_reports 2024-07-03T14:23:05,781 creating build/bdist.linux-armv7l/wheel/galaxy/tools/error_reports/plugins 2024-07-03T14:23:05,782 copying build/lib/galaxy/tools/error_reports/plugins/base_git.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/error_reports/plugins 2024-07-03T14:23:05,784 copying build/lib/galaxy/tools/error_reports/plugins/email.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/error_reports/plugins 2024-07-03T14:23:05,785 copying build/lib/galaxy/tools/error_reports/plugins/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/error_reports/plugins 2024-07-03T14:23:05,787 copying build/lib/galaxy/tools/error_reports/plugins/json.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/error_reports/plugins 2024-07-03T14:23:05,789 copying build/lib/galaxy/tools/error_reports/plugins/slack.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/error_reports/plugins 2024-07-03T14:23:05,791 copying build/lib/galaxy/tools/error_reports/plugins/sentry.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/error_reports/plugins 2024-07-03T14:23:05,793 copying build/lib/galaxy/tools/error_reports/plugins/github.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/error_reports/plugins 2024-07-03T14:23:05,795 copying build/lib/galaxy/tools/error_reports/plugins/influxdb.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/error_reports/plugins 2024-07-03T14:23:05,797 copying build/lib/galaxy/tools/error_reports/plugins/gitlab.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/error_reports/plugins 2024-07-03T14:23:05,799 copying build/lib/galaxy/tools/cross_product_flat.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools 2024-07-03T14:23:05,801 copying build/lib/galaxy/tools/flatten_collection.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools 2024-07-03T14:23:05,803 copying build/lib/galaxy/tools/sort_collection_list.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools 2024-07-03T14:23:05,805 copying build/lib/galaxy/tools/filter_empty_collection.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools 2024-07-03T14:23:05,808 creating build/bdist.linux-armv7l/wheel/galaxy/tools/bundled 2024-07-03T14:23:05,809 creating build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/data_export 2024-07-03T14:23:05,810 copying build/lib/galaxy/tools/bundled/data_export/send.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/data_export 2024-07-03T14:23:05,812 copying build/lib/galaxy/tools/bundled/data_export/export_remote.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/data_export 2024-07-03T14:23:05,814 copying build/lib/galaxy/tools/bundled/data_export/export_remote.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/data_export 2024-07-03T14:23:05,816 copying build/lib/galaxy/tools/bundled/data_export/send.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/data_export 2024-07-03T14:23:05,819 creating build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/data_source 2024-07-03T14:23:05,820 copying build/lib/galaxy/tools/bundled/data_source/biomart.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/data_source 2024-07-03T14:23:05,822 copying build/lib/galaxy/tools/bundled/data_source/upload.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/data_source 2024-07-03T14:23:05,824 copying build/lib/galaxy/tools/bundled/data_source/metabolicmine.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/data_source 2024-07-03T14:23:05,825 copying build/lib/galaxy/tools/bundled/data_source/worm_modencode.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/data_source 2024-07-03T14:23:05,827 copying build/lib/galaxy/tools/bundled/data_source/microbial_import.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/data_source 2024-07-03T14:23:05,829 copying build/lib/galaxy/tools/bundled/data_source/upload.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/data_source 2024-07-03T14:23:05,831 copying build/lib/galaxy/tools/bundled/data_source/yeastmine.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/data_source 2024-07-03T14:23:05,833 copying build/lib/galaxy/tools/bundled/data_source/fly_modencode.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/data_source 2024-07-03T14:23:05,835 copying build/lib/galaxy/tools/bundled/data_source/modmine.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/data_source 2024-07-03T14:23:05,837 copying build/lib/galaxy/tools/bundled/data_source/ucsc_tablebrowser_test.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/data_source 2024-07-03T14:23:05,839 copying build/lib/galaxy/tools/bundled/data_source/flymine.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/data_source 2024-07-03T14:23:05,841 copying build/lib/galaxy/tools/bundled/data_source/microbial_import.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/data_source 2024-07-03T14:23:05,843 copying build/lib/galaxy/tools/bundled/data_source/cbi_rice_mart.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/data_source 2024-07-03T14:23:05,845 copying build/lib/galaxy/tools/bundled/data_source/sra.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/data_source 2024-07-03T14:23:05,846 copying build/lib/galaxy/tools/bundled/data_source/ucsc_tablebrowser_archaea.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/data_source 2024-07-03T14:23:05,848 copying build/lib/galaxy/tools/bundled/data_source/import.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/data_source 2024-07-03T14:23:05,850 copying build/lib/galaxy/tools/bundled/data_source/genbank.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/data_source 2024-07-03T14:23:05,851 copying build/lib/galaxy/tools/bundled/data_source/microbial_import_code.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/data_source 2024-07-03T14:23:05,853 copying build/lib/galaxy/tools/bundled/data_source/biomart_test.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/data_source 2024-07-03T14:23:05,855 copying build/lib/galaxy/tools/bundled/data_source/intermine.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/data_source 2024-07-03T14:23:05,857 copying build/lib/galaxy/tools/bundled/data_source/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/data_source 2024-07-03T14:23:05,859 copying build/lib/galaxy/tools/bundled/data_source/data_source.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/data_source 2024-07-03T14:23:05,861 copying build/lib/galaxy/tools/bundled/data_source/ebi_sra.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/data_source 2024-07-03T14:23:05,863 copying build/lib/galaxy/tools/bundled/data_source/wormbase_test.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/data_source 2024-07-03T14:23:05,864 copying build/lib/galaxy/tools/bundled/data_source/zebrafishmine.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/data_source 2024-07-03T14:23:05,866 copying build/lib/galaxy/tools/bundled/data_source/gramene_mart.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/data_source 2024-07-03T14:23:05,868 copying build/lib/galaxy/tools/bundled/data_source/eupathdb.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/data_source 2024-07-03T14:23:05,869 copying build/lib/galaxy/tools/bundled/data_source/flymine_test.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/data_source 2024-07-03T14:23:05,871 copying build/lib/galaxy/tools/bundled/data_source/ucsc_tablebrowser.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/data_source 2024-07-03T14:23:05,873 copying build/lib/galaxy/tools/bundled/data_source/genbank.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/data_source 2024-07-03T14:23:05,875 copying build/lib/galaxy/tools/bundled/data_source/wormbase.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/data_source 2024-07-03T14:23:05,877 copying build/lib/galaxy/tools/bundled/data_source/mousemine.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/data_source 2024-07-03T14:23:05,878 copying build/lib/galaxy/tools/bundled/data_source/ncbi_datasets.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/data_source 2024-07-03T14:23:05,880 copying build/lib/galaxy/tools/bundled/data_source/import.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/data_source 2024-07-03T14:23:05,882 copying build/lib/galaxy/tools/bundled/data_source/hbvar.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/data_source 2024-07-03T14:23:05,884 copying build/lib/galaxy/tools/bundled/data_source/hapmapmart.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/data_source 2024-07-03T14:23:05,885 copying build/lib/galaxy/tools/bundled/data_source/access_libraries.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/data_source 2024-07-03T14:23:05,887 copying build/lib/galaxy/tools/bundled/data_source/ratmine.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/data_source 2024-07-03T14:23:05,890 creating build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/next_gen_conversion 2024-07-03T14:23:05,891 copying build/lib/galaxy/tools/bundled/next_gen_conversion/fastq_conversions.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/next_gen_conversion 2024-07-03T14:23:05,892 copying build/lib/galaxy/tools/bundled/next_gen_conversion/solid_to_fastq.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/next_gen_conversion 2024-07-03T14:23:05,894 copying build/lib/galaxy/tools/bundled/next_gen_conversion/solid2fastq.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/next_gen_conversion 2024-07-03T14:23:05,896 copying build/lib/galaxy/tools/bundled/next_gen_conversion/solid_to_fastq.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/next_gen_conversion 2024-07-03T14:23:05,898 copying build/lib/galaxy/tools/bundled/next_gen_conversion/fastq_gen_conv.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/next_gen_conversion 2024-07-03T14:23:05,900 copying build/lib/galaxy/tools/bundled/next_gen_conversion/bwa_solid2fastq_modified.pl -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/next_gen_conversion 2024-07-03T14:23:05,902 copying build/lib/galaxy/tools/bundled/next_gen_conversion/fastq_conversions.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/next_gen_conversion 2024-07-03T14:23:05,904 copying build/lib/galaxy/tools/bundled/next_gen_conversion/fastq_gen_conv.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/next_gen_conversion 2024-07-03T14:23:05,906 copying build/lib/galaxy/tools/bundled/next_gen_conversion/solid2fastq.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/next_gen_conversion 2024-07-03T14:23:05,910 creating build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/interactive 2024-07-03T14:23:05,911 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_jupyter_notebook.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/interactive 2024-07-03T14:23:05,913 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_cellxgene_0.16.2.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/interactive 2024-07-03T14:23:05,915 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_isee.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/interactive 2024-07-03T14:23:05,917 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_wallace.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/interactive 2024-07-03T14:23:05,918 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_geoexplorer.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/interactive 2024-07-03T14:23:05,920 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_higlass.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/interactive 2024-07-03T14:23:05,922 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_bam_iobio.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/interactive 2024-07-03T14:23:05,924 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_qiskit_jupyter_notebook.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/interactive 2024-07-03T14:23:05,927 copying build/lib/galaxy/tools/bundled/interactive/default_notebook.ipynb -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/interactive 2024-07-03T14:23:05,929 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_guacamole_desktop.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/interactive 2024-07-03T14:23:05,930 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_pyiron.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/interactive 2024-07-03T14:23:05,933 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_hicbrowser.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/interactive 2024-07-03T14:23:05,934 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_vrm_editor.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/interactive 2024-07-03T14:23:05,936 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_neo4j.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/interactive 2024-07-03T14:23:05,938 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_cellxgene_1.1.1.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/interactive 2024-07-03T14:23:05,940 copying build/lib/galaxy/tools/bundled/interactive/simtext_app.R -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/interactive 2024-07-03T14:23:05,943 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_climate_notebook.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/interactive 2024-07-03T14:23:05,945 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_pavian.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/interactive 2024-07-03T14:23:05,947 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_simtext_app.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/interactive 2024-07-03T14:23:05,949 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_jupyter_notebook_1.0.0.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/interactive 2024-07-03T14:23:05,951 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_radiant.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/interactive 2024-07-03T14:23:05,953 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_mgnify_notebook.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/interactive 2024-07-03T14:23:05,955 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_rstudio.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/interactive 2024-07-03T14:23:05,957 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_paraview.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/interactive 2024-07-03T14:23:05,959 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_ethercalc.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/interactive 2024-07-03T14:23:05,961 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_ml_jupyter_notebook.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/interactive 2024-07-03T14:23:05,963 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_pangeo_notebook.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/interactive 2024-07-03T14:23:05,965 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_askomics.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/interactive 2024-07-03T14:23:05,967 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_vcf_iobio.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/interactive 2024-07-03T14:23:05,969 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_panoply.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/interactive 2024-07-03T14:23:05,971 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_openrefine.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/interactive 2024-07-03T14:23:05,973 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_phinch.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/interactive 2024-07-03T14:23:05,974 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_metashark.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/interactive 2024-07-03T14:23:05,976 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_wilson.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/interactive 2024-07-03T14:23:05,979 creating build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/maf 2024-07-03T14:23:05,980 copying build/lib/galaxy/tools/bundled/maf/vcf_to_maf_customtrack.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/maf 2024-07-03T14:23:05,982 copying build/lib/galaxy/tools/bundled/maf/maf_to_interval.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/maf 2024-07-03T14:23:05,984 copying build/lib/galaxy/tools/bundled/maf/maf_filter.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/maf 2024-07-03T14:23:05,987 copying build/lib/galaxy/tools/bundled/maf/maf_to_interval.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/maf 2024-07-03T14:23:05,988 copying build/lib/galaxy/tools/bundled/maf/vcf_to_maf_customtrack.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/maf 2024-07-03T14:23:05,991 copying build/lib/galaxy/tools/bundled/maf/maf_limit_to_species.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/maf 2024-07-03T14:23:05,992 copying build/lib/galaxy/tools/bundled/maf/maf_reverse_complement.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/maf 2024-07-03T14:23:05,994 copying build/lib/galaxy/tools/bundled/maf/maf_to_bed.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/maf 2024-07-03T14:23:05,996 copying build/lib/galaxy/tools/bundled/maf/maf_split_by_species.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/maf 2024-07-03T14:23:05,998 copying build/lib/galaxy/tools/bundled/maf/interval_maf_to_merged_fasta.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/maf 2024-07-03T14:23:06,001 copying build/lib/galaxy/tools/bundled/maf/genebed_maf_to_fasta.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/maf 2024-07-03T14:23:06,003 copying build/lib/galaxy/tools/bundled/maf/maf_stats.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/maf 2024-07-03T14:23:06,005 copying build/lib/galaxy/tools/bundled/maf/maf_to_bed.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/maf 2024-07-03T14:23:06,007 copying build/lib/galaxy/tools/bundled/maf/maf_limit_size.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/maf 2024-07-03T14:23:06,009 copying build/lib/galaxy/tools/bundled/maf/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/maf 2024-07-03T14:23:06,011 copying build/lib/galaxy/tools/bundled/maf/maf_to_fasta.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/maf 2024-07-03T14:23:06,013 copying build/lib/galaxy/tools/bundled/maf/maf_stats.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/maf 2024-07-03T14:23:06,014 copying build/lib/galaxy/tools/bundled/maf/maf_filter.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/maf 2024-07-03T14:23:06,016 copying build/lib/galaxy/tools/bundled/maf/maf_thread_for_species.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/maf 2024-07-03T14:23:06,018 copying build/lib/galaxy/tools/bundled/maf/interval2maf_pairwise.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/maf 2024-07-03T14:23:06,020 copying build/lib/galaxy/tools/bundled/maf/maf_reverse_complement.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/maf 2024-07-03T14:23:06,021 copying build/lib/galaxy/tools/bundled/maf/maf_limit_to_species.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/maf 2024-07-03T14:23:06,023 copying build/lib/galaxy/tools/bundled/maf/maf_by_block_number.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/maf 2024-07-03T14:23:06,025 copying build/lib/galaxy/tools/bundled/maf/maf_to_bed_code.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/maf 2024-07-03T14:23:06,027 copying build/lib/galaxy/tools/bundled/maf/interval_maf_to_merged_fasta.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/maf 2024-07-03T14:23:06,029 copying build/lib/galaxy/tools/bundled/maf/interval2maf.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/maf 2024-07-03T14:23:06,031 copying build/lib/galaxy/tools/bundled/maf/maf_split_by_species.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/maf 2024-07-03T14:23:06,033 copying build/lib/galaxy/tools/bundled/maf/maf_to_fasta_multiple_sets.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/maf 2024-07-03T14:23:06,035 copying build/lib/galaxy/tools/bundled/maf/maf_limit_size.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/maf 2024-07-03T14:23:06,037 copying build/lib/galaxy/tools/bundled/maf/maf_thread_for_species.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/maf 2024-07-03T14:23:06,039 copying build/lib/galaxy/tools/bundled/maf/maf_to_fasta_concat.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/maf 2024-07-03T14:23:06,041 copying build/lib/galaxy/tools/bundled/maf/macros.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/maf 2024-07-03T14:23:06,042 copying build/lib/galaxy/tools/bundled/maf/interval2maf.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/maf 2024-07-03T14:23:06,045 copying build/lib/galaxy/tools/bundled/maf/maf_by_block_number.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/maf 2024-07-03T14:23:06,047 creating build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/ngs_simulation 2024-07-03T14:23:06,048 copying build/lib/galaxy/tools/bundled/ngs_simulation/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/ngs_simulation 2024-07-03T14:23:06,050 copying build/lib/galaxy/tools/bundled/ngs_simulation/ngs_simulation.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/ngs_simulation 2024-07-03T14:23:06,052 copying build/lib/galaxy/tools/bundled/ngs_simulation/ngs_simulation.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/ngs_simulation 2024-07-03T14:23:06,055 creating build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/solid_tools 2024-07-03T14:23:06,056 copying build/lib/galaxy/tools/bundled/solid_tools/maq_cs_wrapper.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/solid_tools 2024-07-03T14:23:06,058 copying build/lib/galaxy/tools/bundled/solid_tools/maq_cs_wrapper.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/solid_tools 2024-07-03T14:23:06,060 copying build/lib/galaxy/tools/bundled/solid_tools/qualsolid_boxplot_graph.sh -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/solid_tools 2024-07-03T14:23:06,062 copying build/lib/galaxy/tools/bundled/solid_tools/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/solid_tools 2024-07-03T14:23:06,064 copying build/lib/galaxy/tools/bundled/solid_tools/solid_qual_boxplot.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/solid_tools 2024-07-03T14:23:06,066 copying build/lib/galaxy/tools/bundled/solid_tools/maq_cs_wrapper_code.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/solid_tools 2024-07-03T14:23:06,067 copying build/lib/galaxy/tools/bundled/solid_tools/solid_qual_stats.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/solid_tools 2024-07-03T14:23:06,069 copying build/lib/galaxy/tools/bundled/solid_tools/solid_qual_stats.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/solid_tools 2024-07-03T14:23:06,073 creating build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2024-07-03T14:23:06,073 copying build/lib/galaxy/tools/bundled/filters/joiner.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2024-07-03T14:23:06,076 copying build/lib/galaxy/tools/bundled/filters/compare.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2024-07-03T14:23:06,078 copying build/lib/galaxy/tools/bundled/filters/CreateInterval.pl -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2024-07-03T14:23:06,079 copying build/lib/galaxy/tools/bundled/filters/catWrapper.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2024-07-03T14:23:06,081 copying build/lib/galaxy/tools/bundled/filters/convert_characters.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2024-07-03T14:23:06,083 copying build/lib/galaxy/tools/bundled/filters/ucsc_gene_bed_to_exon_bed.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2024-07-03T14:23:06,085 copying build/lib/galaxy/tools/bundled/filters/gtf2bedgraph.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2024-07-03T14:23:06,087 copying build/lib/galaxy/tools/bundled/filters/randomlines.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2024-07-03T14:23:06,089 copying build/lib/galaxy/tools/bundled/filters/fixedValueColumn.pl -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2024-07-03T14:23:06,091 copying build/lib/galaxy/tools/bundled/filters/randomlines.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2024-07-03T14:23:06,093 copying build/lib/galaxy/tools/bundled/filters/CreateInterval.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2024-07-03T14:23:06,095 copying build/lib/galaxy/tools/bundled/filters/joiner2.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2024-07-03T14:23:06,097 copying build/lib/galaxy/tools/bundled/filters/condense_characters.pl -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2024-07-03T14:23:06,098 copying build/lib/galaxy/tools/bundled/filters/bed_to_bigbed.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2024-07-03T14:23:06,100 copying build/lib/galaxy/tools/bundled/filters/secure_hash_message_digest.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2024-07-03T14:23:06,103 copying build/lib/galaxy/tools/bundled/filters/ucsc_gene_bed_to_exon_bed.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2024-07-03T14:23:06,105 copying build/lib/galaxy/tools/bundled/filters/commWrapper.pl -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2024-07-03T14:23:06,107 copying build/lib/galaxy/tools/bundled/filters/joinWrapper.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2024-07-03T14:23:06,109 copying build/lib/galaxy/tools/bundled/filters/ucsc_gene_table_to_intervals.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2024-07-03T14:23:06,110 copying build/lib/galaxy/tools/bundled/filters/sorter.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2024-07-03T14:23:06,113 copying build/lib/galaxy/tools/bundled/filters/sorter.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2024-07-03T14:23:06,115 copying build/lib/galaxy/tools/bundled/filters/lav_to_bed.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2024-07-03T14:23:06,117 copying build/lib/galaxy/tools/bundled/filters/pasteWrapper.pl -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2024-07-03T14:23:06,118 copying build/lib/galaxy/tools/bundled/filters/gtf_to_bedgraph_converter.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2024-07-03T14:23:06,120 copying build/lib/galaxy/tools/bundled/filters/ucsc_gene_bed_to_intron_bed.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2024-07-03T14:23:06,121 copying build/lib/galaxy/tools/bundled/filters/tailWrapper.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2024-07-03T14:23:06,123 copying build/lib/galaxy/tools/bundled/filters/gff_to_bed_converter.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2024-07-03T14:23:06,125 copying build/lib/galaxy/tools/bundled/filters/wig_to_bigwig.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2024-07-03T14:23:06,127 copying build/lib/galaxy/tools/bundled/filters/secure_hash_message_digest.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2024-07-03T14:23:06,129 creating build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters/gff 2024-07-03T14:23:06,130 copying build/lib/galaxy/tools/bundled/filters/gff/gff_filter_by_feature_count.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters/gff 2024-07-03T14:23:06,132 copying build/lib/galaxy/tools/bundled/filters/gff/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters/gff 2024-07-03T14:23:06,133 copying build/lib/galaxy/tools/bundled/filters/gff/gff_filter_by_attribute.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters/gff 2024-07-03T14:23:06,135 copying build/lib/galaxy/tools/bundled/filters/gff/gff_filter_by_attribute.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters/gff 2024-07-03T14:23:06,137 copying build/lib/galaxy/tools/bundled/filters/gff/gtf_filter_by_attribute_values_list.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters/gff 2024-07-03T14:23:06,139 copying build/lib/galaxy/tools/bundled/filters/gff/gff_filter_by_feature_count.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters/gff 2024-07-03T14:23:06,141 copying build/lib/galaxy/tools/bundled/filters/gff/extract_GFF_Features.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters/gff 2024-07-03T14:23:06,143 copying build/lib/galaxy/tools/bundled/filters/gff/extract_GFF_Features.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters/gff 2024-07-03T14:23:06,145 copying build/lib/galaxy/tools/bundled/filters/gff/gtf_filter_by_attribute_values_list.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters/gff 2024-07-03T14:23:06,147 copying build/lib/galaxy/tools/bundled/filters/wiggle_to_simple.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2024-07-03T14:23:06,148 copying build/lib/galaxy/tools/bundled/filters/random_lines_two_pass.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2024-07-03T14:23:06,151 copying build/lib/galaxy/tools/bundled/filters/trimmer.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2024-07-03T14:23:06,153 copying build/lib/galaxy/tools/bundled/filters/axt_to_concat_fasta.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2024-07-03T14:23:06,155 copying build/lib/galaxy/tools/bundled/filters/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2024-07-03T14:23:06,156 copying build/lib/galaxy/tools/bundled/filters/changeCase.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2024-07-03T14:23:06,158 copying build/lib/galaxy/tools/bundled/filters/condense_characters.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2024-07-03T14:23:06,160 copying build/lib/galaxy/tools/bundled/filters/mergeCols.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2024-07-03T14:23:06,162 copying build/lib/galaxy/tools/bundled/filters/lav_to_bed.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2024-07-03T14:23:06,163 copying build/lib/galaxy/tools/bundled/filters/cutWrapper.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2024-07-03T14:23:06,166 copying build/lib/galaxy/tools/bundled/filters/axt_to_lav_code.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2024-07-03T14:23:06,167 copying build/lib/galaxy/tools/bundled/filters/lav_to_bed_code.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2024-07-03T14:23:06,169 copying build/lib/galaxy/tools/bundled/filters/wc_gnu.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2024-07-03T14:23:06,170 copying build/lib/galaxy/tools/bundled/filters/grep.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2024-07-03T14:23:06,173 copying build/lib/galaxy/tools/bundled/filters/headWrapper.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2024-07-03T14:23:06,174 copying build/lib/galaxy/tools/bundled/filters/changeCase.pl -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2024-07-03T14:23:06,176 copying build/lib/galaxy/tools/bundled/filters/fixedValueColumn.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2024-07-03T14:23:06,177 copying build/lib/galaxy/tools/bundled/filters/axt_to_fasta.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2024-07-03T14:23:06,179 copying build/lib/galaxy/tools/bundled/filters/gff2bed.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2024-07-03T14:23:06,181 copying build/lib/galaxy/tools/bundled/filters/uniq.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2024-07-03T14:23:06,183 copying build/lib/galaxy/tools/bundled/filters/cutWrapper.pl -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2024-07-03T14:23:06,185 copying build/lib/galaxy/tools/bundled/filters/remove_beginning.pl -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2024-07-03T14:23:06,186 copying build/lib/galaxy/tools/bundled/filters/axt_to_lav.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2024-07-03T14:23:06,189 copying build/lib/galaxy/tools/bundled/filters/axt_to_concat_fasta.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2024-07-03T14:23:06,190 copying build/lib/galaxy/tools/bundled/filters/axt_to_fasta.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2024-07-03T14:23:06,192 copying build/lib/galaxy/tools/bundled/filters/bed_to_gff_converter.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2024-07-03T14:23:06,194 copying build/lib/galaxy/tools/bundled/filters/mergeCols.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2024-07-03T14:23:06,196 copying build/lib/galaxy/tools/bundled/filters/commWrapper.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2024-07-03T14:23:06,198 copying build/lib/galaxy/tools/bundled/filters/ucsc_gene_bed_to_intron_bed.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2024-07-03T14:23:06,200 copying build/lib/galaxy/tools/bundled/filters/grep_1.0.1.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2024-07-03T14:23:06,202 copying build/lib/galaxy/tools/bundled/filters/fileGrep.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2024-07-03T14:23:06,204 copying build/lib/galaxy/tools/bundled/filters/pasteWrapper.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2024-07-03T14:23:06,206 copying build/lib/galaxy/tools/bundled/filters/trimmer.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2024-07-03T14:23:06,208 copying build/lib/galaxy/tools/bundled/filters/sff_extract.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2024-07-03T14:23:06,211 copying build/lib/galaxy/tools/bundled/filters/catWrapper.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2024-07-03T14:23:06,213 copying build/lib/galaxy/tools/bundled/filters/axt_to_lav.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2024-07-03T14:23:06,215 copying build/lib/galaxy/tools/bundled/filters/grep.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2024-07-03T14:23:06,217 copying build/lib/galaxy/tools/bundled/filters/sff_extractor.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2024-07-03T14:23:06,218 copying build/lib/galaxy/tools/bundled/filters/ucsc_gene_table_to_intervals.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2024-07-03T14:23:06,221 copying build/lib/galaxy/tools/bundled/filters/wiggle_to_simple.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2024-07-03T14:23:06,222 copying build/lib/galaxy/tools/bundled/filters/convert_characters.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2024-07-03T14:23:06,224 copying build/lib/galaxy/tools/bundled/filters/remove_beginning.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2024-07-03T14:23:06,226 copying build/lib/galaxy/tools/bundled/filters/bed2gff.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2024-07-03T14:23:06,228 copying build/lib/galaxy/tools/bundled/filters/join.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2024-07-03T14:23:06,231 copying build/lib/galaxy/tools/bundled/filters/uniq.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2024-07-03T14:23:06,233 creating build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/metag_tools 2024-07-03T14:23:06,234 copying build/lib/galaxy/tools/bundled/metag_tools/shrimp_wrapper.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/metag_tools 2024-07-03T14:23:06,237 copying build/lib/galaxy/tools/bundled/metag_tools/blat_wrapper.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/metag_tools 2024-07-03T14:23:06,239 copying build/lib/galaxy/tools/bundled/metag_tools/blat_wrapper.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/metag_tools 2024-07-03T14:23:06,241 copying build/lib/galaxy/tools/bundled/metag_tools/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/metag_tools 2024-07-03T14:23:06,243 copying build/lib/galaxy/tools/bundled/metag_tools/shrimp_wrapper.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/metag_tools 2024-07-03T14:23:06,246 copying build/lib/galaxy/tools/bundled/metag_tools/shrimp_color_wrapper.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/metag_tools 2024-07-03T14:23:06,248 copying build/lib/galaxy/tools/bundled/metag_tools/shrimp_color_wrapper.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/metag_tools 2024-07-03T14:23:06,251 copying build/lib/galaxy/tools/bundled/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled 2024-07-03T14:23:06,253 creating build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/sr_mapping 2024-07-03T14:23:06,254 copying build/lib/galaxy/tools/bundled/sr_mapping/mosaik.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/sr_mapping 2024-07-03T14:23:06,257 copying build/lib/galaxy/tools/bundled/sr_mapping/bfast_wrapper.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/sr_mapping 2024-07-03T14:23:06,259 copying build/lib/galaxy/tools/bundled/sr_mapping/fastq_statistics.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/sr_mapping 2024-07-03T14:23:06,261 copying build/lib/galaxy/tools/bundled/sr_mapping/srma_wrapper.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/sr_mapping 2024-07-03T14:23:06,263 copying build/lib/galaxy/tools/bundled/sr_mapping/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/sr_mapping 2024-07-03T14:23:06,265 copying build/lib/galaxy/tools/bundled/sr_mapping/PerM.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/sr_mapping 2024-07-03T14:23:06,267 copying build/lib/galaxy/tools/bundled/sr_mapping/bfast_wrapper.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/sr_mapping 2024-07-03T14:23:06,270 copying build/lib/galaxy/tools/bundled/sr_mapping/srma_wrapper.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/sr_mapping 2024-07-03T14:23:06,273 creating build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/meme 2024-07-03T14:23:06,273 copying build/lib/galaxy/tools/bundled/meme/fimo_wrapper.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/meme 2024-07-03T14:23:06,275 copying build/lib/galaxy/tools/bundled/meme/meme.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/meme 2024-07-03T14:23:06,278 copying build/lib/galaxy/tools/bundled/meme/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/meme 2024-07-03T14:23:06,279 copying build/lib/galaxy/tools/bundled/meme/fimo.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/meme 2024-07-03T14:23:06,282 creating build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/phenotype_association 2024-07-03T14:23:06,283 copying build/lib/galaxy/tools/bundled/phenotype_association/ldtools.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/phenotype_association 2024-07-03T14:23:06,286 copying build/lib/galaxy/tools/bundled/phenotype_association/linkToDavid.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/phenotype_association 2024-07-03T14:23:06,288 copying build/lib/galaxy/tools/bundled/phenotype_association/beam.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/phenotype_association 2024-07-03T14:23:06,290 copying build/lib/galaxy/tools/bundled/phenotype_association/ldtools_wrapper.sh -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/phenotype_association 2024-07-03T14:23:06,292 copying build/lib/galaxy/tools/bundled/phenotype_association/lps_tool_wrapper.sh -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/phenotype_association 2024-07-03T14:23:06,294 copying build/lib/galaxy/tools/bundled/phenotype_association/master2gd_snp.pl -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/phenotype_association 2024-07-03T14:23:06,296 copying build/lib/galaxy/tools/bundled/phenotype_association/lped_to_geno.pl -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/phenotype_association 2024-07-03T14:23:06,298 copying build/lib/galaxy/tools/bundled/phenotype_association/BEAM2_wrapper.sh -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/phenotype_association 2024-07-03T14:23:06,300 copying build/lib/galaxy/tools/bundled/phenotype_association/sift.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/phenotype_association 2024-07-03T14:23:06,302 copying build/lib/galaxy/tools/bundled/phenotype_association/master2pg.pl -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/phenotype_association 2024-07-03T14:23:06,304 copying build/lib/galaxy/tools/bundled/phenotype_association/linkToGProfile.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/phenotype_association 2024-07-03T14:23:06,306 copying build/lib/galaxy/tools/bundled/phenotype_association/mergeSnps.pl -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/phenotype_association 2024-07-03T14:23:06,308 copying build/lib/galaxy/tools/bundled/phenotype_association/lps.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/phenotype_association 2024-07-03T14:23:06,310 copying build/lib/galaxy/tools/bundled/phenotype_association/gpass.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/phenotype_association 2024-07-03T14:23:06,312 copying build/lib/galaxy/tools/bundled/phenotype_association/linkToDavid.pl -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/phenotype_association 2024-07-03T14:23:06,314 copying build/lib/galaxy/tools/bundled/phenotype_association/linkToGProfile.pl -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/phenotype_association 2024-07-03T14:23:06,316 copying build/lib/galaxy/tools/bundled/phenotype_association/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/phenotype_association 2024-07-03T14:23:06,317 copying build/lib/galaxy/tools/bundled/phenotype_association/pass.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/phenotype_association 2024-07-03T14:23:06,320 copying build/lib/galaxy/tools/bundled/phenotype_association/gpass.pl -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/phenotype_association 2024-07-03T14:23:06,321 copying build/lib/galaxy/tools/bundled/phenotype_association/pass_wrapper.sh -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/phenotype_association 2024-07-03T14:23:06,323 copying build/lib/galaxy/tools/bundled/phenotype_association/sift_variants_wrapper.sh -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/phenotype_association 2024-07-03T14:23:06,325 copying build/lib/galaxy/tools/bundled/phenotype_association/master2pg.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/phenotype_association 2024-07-03T14:23:06,327 copying build/lib/galaxy/tools/bundled/phenotype_association/senatag.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/phenotype_association 2024-07-03T14:23:06,329 copying build/lib/galaxy/tools/bundled/phenotype_association/pagetag.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/phenotype_association 2024-07-03T14:23:06,331 copying build/lib/galaxy/tools/bundled/phenotype_association/master2gd_snp.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/phenotype_association 2024-07-03T14:23:06,333 creating build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/expression_tools 2024-07-03T14:23:06,334 copying build/lib/galaxy/tools/bundled/expression_tools/pick_value.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/expression_tools 2024-07-03T14:23:06,337 copying build/lib/galaxy/tools/bundled/expression_tools/expression_macros.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/expression_tools 2024-07-03T14:23:06,338 copying build/lib/galaxy/tools/bundled/expression_tools/parse_values_from_file.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/expression_tools 2024-07-03T14:23:06,341 creating build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/sr_assembly 2024-07-03T14:23:06,342 copying build/lib/galaxy/tools/bundled/sr_assembly/velveth.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/sr_assembly 2024-07-03T14:23:06,344 copying build/lib/galaxy/tools/bundled/sr_assembly/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/sr_assembly 2024-07-03T14:23:06,345 copying build/lib/galaxy/tools/bundled/sr_assembly/velvetg_wrapper.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/sr_assembly 2024-07-03T14:23:06,347 copying build/lib/galaxy/tools/bundled/sr_assembly/velveth_wrapper.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/sr_assembly 2024-07-03T14:23:06,349 copying build/lib/galaxy/tools/bundled/sr_assembly/velvetg.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/sr_assembly 2024-07-03T14:23:06,352 creating build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/plotting 2024-07-03T14:23:06,352 copying build/lib/galaxy/tools/bundled/plotting/boxplot.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/plotting 2024-07-03T14:23:06,355 copying build/lib/galaxy/tools/bundled/plotting/bar_chart.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/plotting 2024-07-03T14:23:06,357 copying build/lib/galaxy/tools/bundled/plotting/bar_chart.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/plotting 2024-07-03T14:23:06,359 creating build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/stats 2024-07-03T14:23:06,360 copying build/lib/galaxy/tools/bundled/stats/filtering.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/stats 2024-07-03T14:23:06,362 copying build/lib/galaxy/tools/bundled/stats/filtering_1_1_0.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/stats 2024-07-03T14:23:06,364 copying build/lib/galaxy/tools/bundled/stats/aggregate_scores_in_intervals.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/stats 2024-07-03T14:23:06,367 copying build/lib/galaxy/tools/bundled/stats/r_wrapper.sh -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/stats 2024-07-03T14:23:06,368 copying build/lib/galaxy/tools/bundled/stats/gsummary.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/stats 2024-07-03T14:23:06,370 copying build/lib/galaxy/tools/bundled/stats/filtering.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/stats 2024-07-03T14:23:06,373 copying build/lib/galaxy/tools/bundled/stats/aggregate_binned_scores_in_intervals.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/stats 2024-07-03T14:23:06,375 copying build/lib/galaxy/tools/bundled/stats/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/stats 2024-07-03T14:23:06,376 copying build/lib/galaxy/tools/bundled/stats/gsummary.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/stats 2024-07-03T14:23:06,378 copying build/lib/galaxy/tools/bundled/stats/grouping.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/stats 2024-07-03T14:23:06,380 copying build/lib/galaxy/tools/bundled/stats/grouping.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/stats 2024-07-03T14:23:06,383 creating build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/extract 2024-07-03T14:23:06,383 copying build/lib/galaxy/tools/bundled/extract/liftOver_wrapper.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/extract 2024-07-03T14:23:06,386 copying build/lib/galaxy/tools/bundled/extract/extract_genomic_dna.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/extract 2024-07-03T14:23:06,389 copying build/lib/galaxy/tools/bundled/extract/liftOver_wrapper.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/extract 2024-07-03T14:23:06,390 copying build/lib/galaxy/tools/bundled/extract/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/extract 2024-07-03T14:23:06,392 copying build/lib/galaxy/tools/bundled/extract/extract_genomic_dna.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/extract 2024-07-03T14:23:06,394 copying build/lib/galaxy/tools/tag_collection_from_file.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools 2024-07-03T14:23:06,397 copying build/lib/galaxy/tools/data_fetch.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools 2024-07-03T14:23:06,399 copying build/lib/galaxy/tools/keep_success_collection.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools 2024-07-03T14:23:06,401 creating build/bdist.linux-armv7l/wheel/galaxy/tools/search 2024-07-03T14:23:06,402 copying build/lib/galaxy/tools/search/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/search 2024-07-03T14:23:06,405 creating build/bdist.linux-armv7l/wheel/galaxy/tools/parameters 2024-07-03T14:23:06,406 copying build/lib/galaxy/tools/parameters/sanitize.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/parameters 2024-07-03T14:23:06,408 copying build/lib/galaxy/tools/parameters/wrapped.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/parameters 2024-07-03T14:23:06,410 copying build/lib/galaxy/tools/parameters/meta.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/parameters 2024-07-03T14:23:06,412 copying build/lib/galaxy/tools/parameters/cancelable_request.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/parameters 2024-07-03T14:23:06,414 copying build/lib/galaxy/tools/parameters/workflow_utils.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/parameters 2024-07-03T14:23:06,416 copying build/lib/galaxy/tools/parameters/validation.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/parameters 2024-07-03T14:23:06,419 copying build/lib/galaxy/tools/parameters/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/parameters 2024-07-03T14:23:06,421 copying build/lib/galaxy/tools/parameters/dynamic_options.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/parameters 2024-07-03T14:23:06,424 copying build/lib/galaxy/tools/parameters/basic.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/parameters 2024-07-03T14:23:06,428 copying build/lib/galaxy/tools/parameters/history_query.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/parameters 2024-07-03T14:23:06,430 copying build/lib/galaxy/tools/parameters/input_translation.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/parameters 2024-07-03T14:23:06,432 copying build/lib/galaxy/tools/parameters/dataset_matcher.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/parameters 2024-07-03T14:23:06,435 copying build/lib/galaxy/tools/parameters/wrapped_json.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/parameters 2024-07-03T14:23:06,436 copying build/lib/galaxy/tools/parameters/grouping.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/parameters 2024-07-03T14:23:06,439 copying build/lib/galaxy/tools/remote_tool_eval.py -> build/bdist.linux-armv7l/wheel/galaxy/tools 2024-07-03T14:23:06,442 creating build/bdist.linux-armv7l/wheel/galaxy/tools/expressions 2024-07-03T14:23:06,442 copying build/lib/galaxy/tools/expressions/util.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/expressions 2024-07-03T14:23:06,444 copying build/lib/galaxy/tools/expressions/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/expressions 2024-07-03T14:23:06,446 copying build/lib/galaxy/tools/expressions/cwlNodeEngine.js -> build/bdist.linux-armv7l/wheel/galaxy/tools/expressions 2024-07-03T14:23:06,447 copying build/lib/galaxy/tools/expressions/evaluation.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/expressions 2024-07-03T14:23:06,449 copying build/lib/galaxy/tools/expressions/script.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/expressions 2024-07-03T14:23:06,451 creating build/bdist.linux-armv7l/wheel/galaxy/dependencies 2024-07-03T14:23:06,452 copying build/lib/galaxy/dependencies/lint-requirements.txt -> build/bdist.linux-armv7l/wheel/galaxy/dependencies 2024-07-03T14:23:06,453 copying build/lib/galaxy/dependencies/pinned-typecheck-requirements.txt -> build/bdist.linux-armv7l/wheel/galaxy/dependencies 2024-07-03T14:23:06,455 copying build/lib/galaxy/dependencies/dev-requirements.txt -> build/bdist.linux-armv7l/wheel/galaxy/dependencies 2024-07-03T14:23:06,458 copying build/lib/galaxy/dependencies/update.sh -> build/bdist.linux-armv7l/wheel/galaxy/dependencies 2024-07-03T14:23:06,460 copying build/lib/galaxy/dependencies/pinned-requirements.txt -> build/bdist.linux-armv7l/wheel/galaxy/dependencies 2024-07-03T14:23:06,462 copying build/lib/galaxy/dependencies/update_lint_requirements.sh -> build/bdist.linux-armv7l/wheel/galaxy/dependencies 2024-07-03T14:23:06,464 copying build/lib/galaxy/dependencies/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/dependencies 2024-07-03T14:23:06,466 copying build/lib/galaxy/dependencies/conditional-requirements.txt -> build/bdist.linux-armv7l/wheel/galaxy/dependencies 2024-07-03T14:23:06,468 copying build/lib/galaxy/dependencies/pinned-lint-requirements.txt -> build/bdist.linux-armv7l/wheel/galaxy/dependencies 2024-07-03T14:23:06,470 creating build/bdist.linux-armv7l/wheel/galaxy/jobs 2024-07-03T14:23:06,471 creating build/bdist.linux-armv7l/wheel/galaxy/jobs/splitters 2024-07-03T14:23:06,472 copying build/lib/galaxy/jobs/splitters/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs/splitters 2024-07-03T14:23:06,474 copying build/lib/galaxy/jobs/splitters/basic.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs/splitters 2024-07-03T14:23:06,476 copying build/lib/galaxy/jobs/splitters/multi.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs/splitters 2024-07-03T14:23:06,478 copying build/lib/galaxy/jobs/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs 2024-07-03T14:23:06,483 creating build/bdist.linux-armv7l/wheel/galaxy/jobs/runners 2024-07-03T14:23:06,484 copying build/lib/galaxy/jobs/runners/tasks.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs/runners 2024-07-03T14:23:06,486 copying build/lib/galaxy/jobs/runners/pulsar.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs/runners 2024-07-03T14:23:06,489 copying build/lib/galaxy/jobs/runners/pbs.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs/runners 2024-07-03T14:23:06,492 copying build/lib/galaxy/jobs/runners/local.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs/runners 2024-07-03T14:23:06,494 copying build/lib/galaxy/jobs/runners/kubernetes.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs/runners 2024-07-03T14:23:06,497 copying build/lib/galaxy/jobs/runners/condor.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs/runners 2024-07-03T14:23:06,499 copying build/lib/galaxy/jobs/runners/chronos.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs/runners 2024-07-03T14:23:06,501 copying build/lib/galaxy/jobs/runners/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs/runners 2024-07-03T14:23:06,504 copying build/lib/galaxy/jobs/runners/godocker.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs/runners 2024-07-03T14:23:06,506 copying build/lib/galaxy/jobs/runners/drmaa.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs/runners 2024-07-03T14:23:06,509 creating build/bdist.linux-armv7l/wheel/galaxy/jobs/runners/util 2024-07-03T14:23:06,510 creating build/bdist.linux-armv7l/wheel/galaxy/jobs/runners/util/cli 2024-07-03T14:23:06,512 creating build/bdist.linux-armv7l/wheel/galaxy/jobs/runners/util/cli/job 2024-07-03T14:23:06,513 copying build/lib/galaxy/jobs/runners/util/cli/job/pbs.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs/runners/util/cli/job 2024-07-03T14:23:06,515 copying build/lib/galaxy/jobs/runners/util/cli/job/torque.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs/runners/util/cli/job 2024-07-03T14:23:06,517 copying build/lib/galaxy/jobs/runners/util/cli/job/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs/runners/util/cli/job 2024-07-03T14:23:06,519 copying build/lib/galaxy/jobs/runners/util/cli/job/lsf.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs/runners/util/cli/job 2024-07-03T14:23:06,521 copying build/lib/galaxy/jobs/runners/util/cli/job/slurm_torque.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs/runners/util/cli/job 2024-07-03T14:23:06,523 copying build/lib/galaxy/jobs/runners/util/cli/job/slurm.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs/runners/util/cli/job 2024-07-03T14:23:06,525 creating build/bdist.linux-armv7l/wheel/galaxy/jobs/runners/util/cli/shell 2024-07-03T14:23:06,526 copying build/lib/galaxy/jobs/runners/util/cli/shell/local.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs/runners/util/cli/shell 2024-07-03T14:23:06,528 copying build/lib/galaxy/jobs/runners/util/cli/shell/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs/runners/util/cli/shell 2024-07-03T14:23:06,530 copying build/lib/galaxy/jobs/runners/util/cli/shell/rsh.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs/runners/util/cli/shell 2024-07-03T14:23:06,532 copying build/lib/galaxy/jobs/runners/util/cli/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs/runners/util/cli 2024-07-03T14:23:06,534 copying build/lib/galaxy/jobs/runners/util/cli/factory.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs/runners/util/cli 2024-07-03T14:23:06,536 copying build/lib/galaxy/jobs/runners/util/process_groups.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs/runners/util 2024-07-03T14:23:06,538 copying build/lib/galaxy/jobs/runners/util/kill.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs/runners/util 2024-07-03T14:23:06,539 copying build/lib/galaxy/jobs/runners/util/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs/runners/util 2024-07-03T14:23:06,541 creating build/bdist.linux-armv7l/wheel/galaxy/jobs/runners/util/condor 2024-07-03T14:23:06,542 copying build/lib/galaxy/jobs/runners/util/condor/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs/runners/util/condor 2024-07-03T14:23:06,545 copying build/lib/galaxy/jobs/runners/util/sudo.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs/runners/util 2024-07-03T14:23:06,546 copying build/lib/galaxy/jobs/runners/util/pykube_util.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs/runners/util 2024-07-03T14:23:06,549 copying build/lib/galaxy/jobs/runners/util/fork_safe_write.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs/runners/util 2024-07-03T14:23:06,550 copying build/lib/galaxy/jobs/runners/util/env.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs/runners/util 2024-07-03T14:23:06,553 creating build/bdist.linux-armv7l/wheel/galaxy/jobs/runners/util/job_script 2024-07-03T14:23:06,553 copying build/lib/galaxy/jobs/runners/util/job_script/DEFAULT_JOB_FILE_TEMPLATE.sh -> build/bdist.linux-armv7l/wheel/galaxy/jobs/runners/util/job_script 2024-07-03T14:23:06,555 copying build/lib/galaxy/jobs/runners/util/job_script/MEMORY_STATEMENT_TEMPLATE.sh -> build/bdist.linux-armv7l/wheel/galaxy/jobs/runners/util/job_script 2024-07-03T14:23:06,557 copying build/lib/galaxy/jobs/runners/util/job_script/CLUSTER_SLOTS_STATEMENT.sh -> build/bdist.linux-armv7l/wheel/galaxy/jobs/runners/util/job_script 2024-07-03T14:23:06,559 copying build/lib/galaxy/jobs/runners/util/job_script/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs/runners/util/job_script 2024-07-03T14:23:06,561 copying build/lib/galaxy/jobs/runners/util/external.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs/runners/util 2024-07-03T14:23:06,562 copying build/lib/galaxy/jobs/runners/aws.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs/runners 2024-07-03T14:23:06,565 creating build/bdist.linux-armv7l/wheel/galaxy/jobs/runners/state_handlers 2024-07-03T14:23:06,566 copying build/lib/galaxy/jobs/runners/state_handlers/resubmit.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs/runners/state_handlers 2024-07-03T14:23:06,568 copying build/lib/galaxy/jobs/runners/state_handlers/_safe_eval.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs/runners/state_handlers 2024-07-03T14:23:06,571 copying build/lib/galaxy/jobs/runners/state_handlers/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs/runners/state_handlers 2024-07-03T14:23:06,572 copying build/lib/galaxy/jobs/runners/cli.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs/runners 2024-07-03T14:23:06,575 copying build/lib/galaxy/jobs/runners/univa.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs/runners 2024-07-03T14:23:06,578 copying build/lib/galaxy/jobs/runners/slurm.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs/runners 2024-07-03T14:23:06,580 copying build/lib/galaxy/jobs/runners/state_handler_factory.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs/runners 2024-07-03T14:23:06,581 copying build/lib/galaxy/jobs/handler.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs 2024-07-03T14:23:06,585 copying build/lib/galaxy/jobs/stock_rules.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs 2024-07-03T14:23:06,586 copying build/lib/galaxy/jobs/rule_helper.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs 2024-07-03T14:23:06,589 copying build/lib/galaxy/jobs/mapper.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs 2024-07-03T14:23:06,591 creating build/bdist.linux-armv7l/wheel/galaxy/jobs/rules 2024-07-03T14:23:06,592 copying build/lib/galaxy/jobs/rules/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs/rules 2024-07-03T14:23:06,594 copying build/lib/galaxy/jobs/dynamic_tool_destination.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs 2024-07-03T14:23:06,597 copying build/lib/galaxy/jobs/manager.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs 2024-07-03T14:23:06,600 copying build/lib/galaxy/jobs/command_factory.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs 2024-07-03T14:23:06,602 copying build/lib/galaxy/main_config.py -> build/bdist.linux-armv7l/wheel/galaxy 2024-07-03T14:23:06,604 creating build/bdist.linux-armv7l/wheel/galaxy/actions 2024-07-03T14:23:06,605 copying build/lib/galaxy/actions/library.py -> build/bdist.linux-armv7l/wheel/galaxy/actions 2024-07-03T14:23:06,608 copying build/lib/galaxy/actions/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/actions 2024-07-03T14:23:06,609 copying build/lib/galaxy/main.py -> build/bdist.linux-armv7l/wheel/galaxy 2024-07-03T14:23:06,613 creating build/bdist.linux-armv7l/wheel/galaxy/managers 2024-07-03T14:23:06,614 copying build/lib/galaxy/managers/dbkeys.py -> build/bdist.linux-armv7l/wheel/galaxy/managers 2024-07-03T14:23:06,616 copying build/lib/galaxy/managers/forms.py -> build/bdist.linux-armv7l/wheel/galaxy/managers 2024-07-03T14:23:06,618 copying build/lib/galaxy/managers/item_tags.py -> build/bdist.linux-armv7l/wheel/galaxy/managers 2024-07-03T14:23:06,620 copying build/lib/galaxy/managers/tasks.py -> build/bdist.linux-armv7l/wheel/galaxy/managers 2024-07-03T14:23:06,622 copying build/lib/galaxy/managers/job_connections.py -> build/bdist.linux-armv7l/wheel/galaxy/managers 2024-07-03T14:23:06,624 copying build/lib/galaxy/managers/workflows.py -> build/bdist.linux-armv7l/wheel/galaxy/managers 2024-07-03T14:23:06,628 copying build/lib/galaxy/managers/file_source_instances.py -> build/bdist.linux-armv7l/wheel/galaxy/managers 2024-07-03T14:23:06,630 copying build/lib/galaxy/managers/collections.py -> build/bdist.linux-armv7l/wheel/galaxy/managers 2024-07-03T14:23:06,633 copying build/lib/galaxy/managers/secured.py -> build/bdist.linux-armv7l/wheel/galaxy/managers 2024-07-03T14:23:06,635 copying build/lib/galaxy/managers/context.py -> build/bdist.linux-armv7l/wheel/galaxy/managers 2024-07-03T14:23:06,637 copying build/lib/galaxy/managers/model_stores.py -> build/bdist.linux-armv7l/wheel/galaxy/managers 2024-07-03T14:23:06,639 copying build/lib/galaxy/managers/remote_files.py -> build/bdist.linux-armv7l/wheel/galaxy/managers 2024-07-03T14:23:06,641 copying build/lib/galaxy/managers/configuration.py -> build/bdist.linux-armv7l/wheel/galaxy/managers 2024-07-03T14:23:06,643 copying build/lib/galaxy/managers/history_contents.py -> build/bdist.linux-armv7l/wheel/galaxy/managers 2024-07-03T14:23:06,646 copying build/lib/galaxy/managers/executables.py -> build/bdist.linux-armv7l/wheel/galaxy/managers 2024-07-03T14:23:06,647 copying build/lib/galaxy/managers/datatypes.py -> build/bdist.linux-armv7l/wheel/galaxy/managers 2024-07-03T14:23:06,650 copying build/lib/galaxy/managers/_config_templates.py -> build/bdist.linux-armv7l/wheel/galaxy/managers 2024-07-03T14:23:06,652 copying build/lib/galaxy/managers/group_users.py -> build/bdist.linux-armv7l/wheel/galaxy/managers 2024-07-03T14:23:06,654 copying build/lib/galaxy/managers/citations.py -> build/bdist.linux-armv7l/wheel/galaxy/managers 2024-07-03T14:23:06,657 copying build/lib/galaxy/managers/quotas.py -> build/bdist.linux-armv7l/wheel/galaxy/managers 2024-07-03T14:23:06,659 copying build/lib/galaxy/managers/histories.py -> build/bdist.linux-armv7l/wheel/galaxy/managers 2024-07-03T14:23:06,661 copying build/lib/galaxy/managers/rbac_secured.py -> build/bdist.linux-armv7l/wheel/galaxy/managers 2024-07-03T14:23:06,664 copying build/lib/galaxy/managers/interactivetool.py -> build/bdist.linux-armv7l/wheel/galaxy/managers 2024-07-03T14:23:06,666 copying build/lib/galaxy/managers/visualizations.py -> build/bdist.linux-armv7l/wheel/galaxy/managers 2024-07-03T14:23:06,668 copying build/lib/galaxy/managers/session.py -> build/bdist.linux-armv7l/wheel/galaxy/managers 2024-07-03T14:23:06,670 copying build/lib/galaxy/managers/sharable.py -> build/bdist.linux-armv7l/wheel/galaxy/managers 2024-07-03T14:23:06,672 copying build/lib/galaxy/managers/notification.py -> build/bdist.linux-armv7l/wheel/galaxy/managers 2024-07-03T14:23:06,675 copying build/lib/galaxy/managers/export_tracker.py -> build/bdist.linux-armv7l/wheel/galaxy/managers 2024-07-03T14:23:06,677 copying build/lib/galaxy/managers/ratable.py -> build/bdist.linux-armv7l/wheel/galaxy/managers 2024-07-03T14:23:06,679 copying build/lib/galaxy/managers/groups.py -> build/bdist.linux-armv7l/wheel/galaxy/managers 2024-07-03T14:23:06,682 copying build/lib/galaxy/managers/base.py -> build/bdist.linux-armv7l/wheel/galaxy/managers 2024-07-03T14:23:06,685 copying build/lib/galaxy/managers/licenses.py -> build/bdist.linux-armv7l/wheel/galaxy/managers 2024-07-03T14:23:06,686 copying build/lib/galaxy/managers/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/managers 2024-07-03T14:23:06,688 copying build/lib/galaxy/managers/datasets.py -> build/bdist.linux-armv7l/wheel/galaxy/managers 2024-07-03T14:23:06,691 copying build/lib/galaxy/managers/tools.py -> build/bdist.linux-armv7l/wheel/galaxy/managers 2024-07-03T14:23:06,693 copying build/lib/galaxy/managers/markdown_parse.py -> build/bdist.linux-armv7l/wheel/galaxy/managers 2024-07-03T14:23:06,695 copying build/lib/galaxy/managers/tool_data.py -> build/bdist.linux-armv7l/wheel/galaxy/managers 2024-07-03T14:23:06,697 copying build/lib/galaxy/managers/licenses.json -> build/bdist.linux-armv7l/wheel/galaxy/managers 2024-07-03T14:23:06,702 copying build/lib/galaxy/managers/group_roles.py -> build/bdist.linux-armv7l/wheel/galaxy/managers 2024-07-03T14:23:06,703 copying build/lib/galaxy/managers/display_applications.py -> build/bdist.linux-armv7l/wheel/galaxy/managers 2024-07-03T14:23:06,705 copying build/lib/galaxy/managers/hdcas.py -> build/bdist.linux-armv7l/wheel/galaxy/managers 2024-07-03T14:23:06,708 copying build/lib/galaxy/managers/genomes.py -> build/bdist.linux-armv7l/wheel/galaxy/managers 2024-07-03T14:23:06,710 copying build/lib/galaxy/managers/object_store_instances.py -> build/bdist.linux-armv7l/wheel/galaxy/managers 2024-07-03T14:23:06,712 copying build/lib/galaxy/managers/cloudauthzs.py -> build/bdist.linux-armv7l/wheel/galaxy/managers 2024-07-03T14:23:06,714 copying build/lib/galaxy/managers/folders.py -> build/bdist.linux-armv7l/wheel/galaxy/managers 2024-07-03T14:23:06,716 copying build/lib/galaxy/managers/markdown_util.py -> build/bdist.linux-armv7l/wheel/galaxy/managers 2024-07-03T14:23:06,719 copying build/lib/galaxy/managers/annotatable.py -> build/bdist.linux-armv7l/wheel/galaxy/managers 2024-07-03T14:23:06,721 copying build/lib/galaxy/managers/users.py -> build/bdist.linux-armv7l/wheel/galaxy/managers 2024-07-03T14:23:06,724 copying build/lib/galaxy/managers/taggable.py -> build/bdist.linux-armv7l/wheel/galaxy/managers 2024-07-03T14:23:06,726 copying build/lib/galaxy/managers/deletable.py -> build/bdist.linux-armv7l/wheel/galaxy/managers 2024-07-03T14:23:06,728 copying build/lib/galaxy/managers/lddas.py -> build/bdist.linux-armv7l/wheel/galaxy/managers 2024-07-03T14:23:06,729 copying build/lib/galaxy/managers/library_datasets.py -> build/bdist.linux-armv7l/wheel/galaxy/managers 2024-07-03T14:23:06,732 copying build/lib/galaxy/managers/jobs.py -> build/bdist.linux-armv7l/wheel/galaxy/managers 2024-07-03T14:23:06,735 copying build/lib/galaxy/managers/api_keys.py -> build/bdist.linux-armv7l/wheel/galaxy/managers 2024-07-03T14:23:06,736 copying build/lib/galaxy/managers/tags.py -> build/bdist.linux-armv7l/wheel/galaxy/managers 2024-07-03T14:23:06,738 copying build/lib/galaxy/managers/markdown_export_base.css -> build/bdist.linux-armv7l/wheel/galaxy/managers 2024-07-03T14:23:06,740 copying build/lib/galaxy/managers/collections_util.py -> build/bdist.linux-armv7l/wheel/galaxy/managers 2024-07-03T14:23:06,742 copying build/lib/galaxy/managers/hdas.py -> build/bdist.linux-armv7l/wheel/galaxy/managers 2024-07-03T14:23:06,745 copying build/lib/galaxy/managers/libraries.py -> build/bdist.linux-armv7l/wheel/galaxy/managers 2024-07-03T14:23:06,747 copying build/lib/galaxy/managers/metrics.py -> build/bdist.linux-armv7l/wheel/galaxy/managers 2024-07-03T14:23:06,749 copying build/lib/galaxy/managers/cloud.py -> build/bdist.linux-armv7l/wheel/galaxy/managers 2024-07-03T14:23:06,752 copying build/lib/galaxy/managers/roles.py -> build/bdist.linux-armv7l/wheel/galaxy/managers 2024-07-03T14:23:06,754 copying build/lib/galaxy/managers/pages.py -> build/bdist.linux-armv7l/wheel/galaxy/managers 2024-07-03T14:23:06,757 creating build/bdist.linux-armv7l/wheel/galaxy/webhooks 2024-07-03T14:23:06,758 copying build/lib/galaxy/webhooks/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/webhooks 2024-07-03T14:23:06,760 creating build/bdist.linux-armv7l/wheel/galaxy/celery 2024-07-03T14:23:06,761 copying build/lib/galaxy/celery/tasks.py -> build/bdist.linux-armv7l/wheel/galaxy/celery 2024-07-03T14:23:06,764 copying build/lib/galaxy/celery/_serialization.py -> build/bdist.linux-armv7l/wheel/galaxy/celery 2024-07-03T14:23:06,766 copying build/lib/galaxy/celery/base_task.py -> build/bdist.linux-armv7l/wheel/galaxy/celery 2024-07-03T14:23:06,768 copying build/lib/galaxy/celery/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/celery 2024-07-03T14:23:06,771 creating build/bdist.linux-armv7l/wheel/galaxy/tool_shed 2024-07-03T14:23:06,772 creating build/bdist.linux-armv7l/wheel/galaxy/tool_shed/metadata 2024-07-03T14:23:06,773 copying build/lib/galaxy/tool_shed/metadata/metadata_generator.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_shed/metadata 2024-07-03T14:23:06,776 copying build/lib/galaxy/tool_shed/metadata/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_shed/metadata 2024-07-03T14:23:06,778 copying build/lib/galaxy/tool_shed/cache.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_shed 2024-07-03T14:23:06,779 copying build/lib/galaxy/tool_shed/repository_type.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_shed 2024-07-03T14:23:06,781 creating build/bdist.linux-armv7l/wheel/galaxy/tool_shed/tools 2024-07-03T14:23:06,782 copying build/lib/galaxy/tool_shed/tools/tool_validator.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_shed/tools 2024-07-03T14:23:06,785 copying build/lib/galaxy/tool_shed/tools/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_shed/tools 2024-07-03T14:23:06,786 copying build/lib/galaxy/tool_shed/tools/data_table_manager.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_shed/tools 2024-07-03T14:23:06,789 creating build/bdist.linux-armv7l/wheel/galaxy/tool_shed/unittest_utils 2024-07-03T14:23:06,789 copying build/lib/galaxy/tool_shed/unittest_utils/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_shed/unittest_utils 2024-07-03T14:23:06,791 copying build/lib/galaxy/tool_shed/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_shed 2024-07-03T14:23:06,793 creating build/bdist.linux-armv7l/wheel/galaxy/tool_shed/util 2024-07-03T14:23:06,794 copying build/lib/galaxy/tool_shed/util/metadata_util.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_shed/util 2024-07-03T14:23:06,796 copying build/lib/galaxy/tool_shed/util/tool_util.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_shed/util 2024-07-03T14:23:06,798 copying build/lib/galaxy/tool_shed/util/hg_util.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_shed/util 2024-07-03T14:23:06,800 copying build/lib/galaxy/tool_shed/util/utility_container_manager.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_shed/util 2024-07-03T14:23:06,803 copying build/lib/galaxy/tool_shed/util/basic_util.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_shed/util 2024-07-03T14:23:06,805 copying build/lib/galaxy/tool_shed/util/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_shed/util 2024-07-03T14:23:06,806 copying build/lib/galaxy/tool_shed/util/dependency_display.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_shed/util 2024-07-03T14:23:06,809 copying build/lib/galaxy/tool_shed/util/shed_util_common.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_shed/util 2024-07-03T14:23:06,811 copying build/lib/galaxy/tool_shed/util/repository_util.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_shed/util 2024-07-03T14:23:06,814 copying build/lib/galaxy/tool_shed/util/tool_dependency_util.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_shed/util 2024-07-03T14:23:06,816 copying build/lib/galaxy/tool_shed/util/container_util.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_shed/util 2024-07-03T14:23:06,819 creating build/bdist.linux-armv7l/wheel/galaxy/tool_shed/galaxy_install 2024-07-03T14:23:06,820 creating build/bdist.linux-armv7l/wheel/galaxy/tool_shed/galaxy_install/metadata 2024-07-03T14:23:06,821 copying build/lib/galaxy/tool_shed/galaxy_install/metadata/installed_repository_metadata_manager.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_shed/galaxy_install/metadata 2024-07-03T14:23:06,823 copying build/lib/galaxy/tool_shed/galaxy_install/metadata/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_shed/galaxy_install/metadata 2024-07-03T14:23:06,825 copying build/lib/galaxy/tool_shed/galaxy_install/client.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_shed/galaxy_install 2024-07-03T14:23:06,828 creating build/bdist.linux-armv7l/wheel/galaxy/tool_shed/galaxy_install/tools 2024-07-03T14:23:06,829 copying build/lib/galaxy/tool_shed/galaxy_install/tools/data_manager.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_shed/galaxy_install/tools 2024-07-03T14:23:06,831 copying build/lib/galaxy/tool_shed/galaxy_install/tools/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_shed/galaxy_install/tools 2024-07-03T14:23:06,832 copying build/lib/galaxy/tool_shed/galaxy_install/tools/tool_panel_manager.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_shed/galaxy_install/tools 2024-07-03T14:23:06,835 copying build/lib/galaxy/tool_shed/galaxy_install/install_manager.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_shed/galaxy_install 2024-07-03T14:23:06,838 copying build/lib/galaxy/tool_shed/galaxy_install/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_shed/galaxy_install 2024-07-03T14:23:06,839 copying build/lib/galaxy/tool_shed/galaxy_install/update_repository_manager.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_shed/galaxy_install 2024-07-03T14:23:06,842 creating build/bdist.linux-armv7l/wheel/galaxy/tool_shed/galaxy_install/repository_dependencies 2024-07-03T14:23:06,842 copying build/lib/galaxy/tool_shed/galaxy_install/repository_dependencies/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_shed/galaxy_install/repository_dependencies 2024-07-03T14:23:06,844 copying build/lib/galaxy/tool_shed/galaxy_install/repository_dependencies/repository_dependency_manager.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_shed/galaxy_install/repository_dependencies 2024-07-03T14:23:06,847 copying build/lib/galaxy/tool_shed/galaxy_install/installed_repository_manager.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_shed/galaxy_install 2024-07-03T14:23:06,849 copying build/lib/galaxy/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy 2024-07-03T14:23:06,851 creating build/bdist.linux-armv7l/wheel/galaxy/carbon_emissions 2024-07-03T14:23:06,853 copying build/lib/galaxy/carbon_emissions/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/carbon_emissions 2024-07-03T14:23:06,854 copying build/lib/galaxy/carbon_emissions/carbon_intensity.csv -> build/bdist.linux-armv7l/wheel/galaxy/carbon_emissions 2024-07-03T14:23:06,858 creating build/bdist.linux-armv7l/wheel/galaxy/work 2024-07-03T14:23:06,858 copying build/lib/galaxy/work/context.py -> build/bdist.linux-armv7l/wheel/galaxy/work 2024-07-03T14:23:06,861 copying build/lib/galaxy/work/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/work 2024-07-03T14:23:06,862 copying build/lib/galaxy/queues.py -> build/bdist.linux-armv7l/wheel/galaxy 2024-07-03T14:23:06,864 copying build/lib/galaxy/config_watchers.py -> build/bdist.linux-armv7l/wheel/galaxy 2024-07-03T14:23:06,866 copying build/lib/galaxy/structured_app.py -> build/bdist.linux-armv7l/wheel/galaxy 2024-07-03T14:23:06,869 creating build/bdist.linux-armv7l/wheel/galaxy/authnz 2024-07-03T14:23:06,870 copying build/lib/galaxy/authnz/custos_authnz.py -> build/bdist.linux-armv7l/wheel/galaxy/authnz 2024-07-03T14:23:06,873 copying build/lib/galaxy/authnz/util.py -> build/bdist.linux-armv7l/wheel/galaxy/authnz 2024-07-03T14:23:06,874 copying build/lib/galaxy/authnz/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/authnz 2024-07-03T14:23:06,876 copying build/lib/galaxy/authnz/psa_authnz.py -> build/bdist.linux-armv7l/wheel/galaxy/authnz 2024-07-03T14:23:06,879 copying build/lib/galaxy/authnz/managers.py -> build/bdist.linux-armv7l/wheel/galaxy/authnz 2024-07-03T14:23:06,882 creating build/bdist.linux-armv7l/wheel/galaxy/workflow 2024-07-03T14:23:06,883 copying build/lib/galaxy/workflow/run.py -> build/bdist.linux-armv7l/wheel/galaxy/workflow 2024-07-03T14:23:06,886 copying build/lib/galaxy/workflow/run_request.py -> build/bdist.linux-armv7l/wheel/galaxy/workflow 2024-07-03T14:23:06,889 copying build/lib/galaxy/workflow/trs_proxy.py -> build/bdist.linux-armv7l/wheel/galaxy/workflow 2024-07-03T14:23:06,891 creating build/bdist.linux-armv7l/wheel/galaxy/workflow/schedulers 2024-07-03T14:23:06,892 copying build/lib/galaxy/workflow/schedulers/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/workflow/schedulers 2024-07-03T14:23:06,894 copying build/lib/galaxy/workflow/schedulers/core.py -> build/bdist.linux-armv7l/wheel/galaxy/workflow/schedulers 2024-07-03T14:23:06,895 copying build/lib/galaxy/workflow/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/workflow 2024-07-03T14:23:06,897 copying build/lib/galaxy/workflow/steps.py -> build/bdist.linux-armv7l/wheel/galaxy/workflow 2024-07-03T14:23:06,899 creating build/bdist.linux-armv7l/wheel/galaxy/workflow/resources 2024-07-03T14:23:06,900 copying build/lib/galaxy/workflow/resources/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/workflow/resources 2024-07-03T14:23:06,902 copying build/lib/galaxy/workflow/resources/example.py.sample -> build/bdist.linux-armv7l/wheel/galaxy/workflow/resources 2024-07-03T14:23:06,904 creating build/bdist.linux-armv7l/wheel/galaxy/workflow/reports 2024-07-03T14:23:06,906 creating build/bdist.linux-armv7l/wheel/galaxy/workflow/reports/generators 2024-07-03T14:23:06,906 copying build/lib/galaxy/workflow/reports/generators/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/workflow/reports/generators 2024-07-03T14:23:06,909 copying build/lib/galaxy/workflow/reports/generators/markdown.py -> build/bdist.linux-armv7l/wheel/galaxy/workflow/reports/generators 2024-07-03T14:23:06,910 copying build/lib/galaxy/workflow/reports/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/workflow/reports 2024-07-03T14:23:06,912 creating build/bdist.linux-armv7l/wheel/galaxy/workflow/refactor 2024-07-03T14:23:06,913 copying build/lib/galaxy/workflow/refactor/execute.py -> build/bdist.linux-armv7l/wheel/galaxy/workflow/refactor 2024-07-03T14:23:06,916 copying build/lib/galaxy/workflow/refactor/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/workflow/refactor 2024-07-03T14:23:06,918 copying build/lib/galaxy/workflow/refactor/schema.py -> build/bdist.linux-armv7l/wheel/galaxy/workflow/refactor 2024-07-03T14:23:06,920 copying build/lib/galaxy/workflow/modules.py -> build/bdist.linux-armv7l/wheel/galaxy/workflow 2024-07-03T14:23:06,924 copying build/lib/galaxy/workflow/render.py -> build/bdist.linux-armv7l/wheel/galaxy/workflow 2024-07-03T14:23:06,927 copying build/lib/galaxy/workflow/extract.py -> build/bdist.linux-armv7l/wheel/galaxy/workflow 2024-07-03T14:23:06,929 copying build/lib/galaxy/workflow/scheduling_manager.py -> build/bdist.linux-armv7l/wheel/galaxy/workflow 2024-07-03T14:23:06,931 copying build/lib/galaxy/queue_worker.py -> build/bdist.linux-armv7l/wheel/galaxy 2024-07-03T14:23:06,934 creating build/bdist.linux-armv7l/wheel/galaxy/forms 2024-07-03T14:23:06,935 copying build/lib/galaxy/forms/forms.py -> build/bdist.linux-armv7l/wheel/galaxy/forms 2024-07-03T14:23:06,937 copying build/lib/galaxy/forms/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/forms 2024-07-03T14:23:06,938 copying build/lib/galaxy/di.py -> build/bdist.linux-armv7l/wheel/galaxy 2024-07-03T14:23:06,940 copying build/lib/galaxy/py.typed -> build/bdist.linux-armv7l/wheel/galaxy 2024-07-03T14:23:06,942 creating build/bdist.linux-armv7l/wheel/tool_shed_client 2024-07-03T14:23:06,943 copying build/lib/tool_shed_client/trs_util.py -> build/bdist.linux-armv7l/wheel/tool_shed_client 2024-07-03T14:23:06,946 creating build/bdist.linux-armv7l/wheel/tool_shed_client/schema 2024-07-03T14:23:06,946 copying build/lib/tool_shed_client/schema/trs_service_info.py -> build/bdist.linux-armv7l/wheel/tool_shed_client/schema 2024-07-03T14:23:06,949 copying build/lib/tool_shed_client/schema/__init__.py -> build/bdist.linux-armv7l/wheel/tool_shed_client/schema 2024-07-03T14:23:06,951 copying build/lib/tool_shed_client/schema/trs.py -> build/bdist.linux-armv7l/wheel/tool_shed_client/schema 2024-07-03T14:23:06,953 copying build/lib/tool_shed_client/__init__.py -> build/bdist.linux-armv7l/wheel/tool_shed_client 2024-07-03T14:23:06,954 copying build/lib/tool_shed_client/py.typed -> build/bdist.linux-armv7l/wheel/tool_shed_client 2024-07-03T14:23:06,957 creating build/bdist.linux-armv7l/wheel/galaxy_ext 2024-07-03T14:23:06,958 creating build/bdist.linux-armv7l/wheel/galaxy_ext/metadata 2024-07-03T14:23:06,959 copying build/lib/galaxy_ext/metadata/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy_ext/metadata 2024-07-03T14:23:06,960 copying build/lib/galaxy_ext/metadata/set_metadata.py -> build/bdist.linux-armv7l/wheel/galaxy_ext/metadata 2024-07-03T14:23:06,962 copying build/lib/galaxy_ext/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy_ext 2024-07-03T14:23:06,963 copying build/lib/galaxy_ext/py.typed -> build/bdist.linux-armv7l/wheel/galaxy_ext 2024-07-03T14:23:06,965 creating build/bdist.linux-armv7l/wheel/galaxy_ext/container_monitor 2024-07-03T14:23:06,966 copying build/lib/galaxy_ext/container_monitor/monitor.py -> build/bdist.linux-armv7l/wheel/galaxy_ext/container_monitor 2024-07-03T14:23:06,968 copying build/lib/galaxy_ext/container_monitor/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy_ext/container_monitor 2024-07-03T14:23:06,969 creating build/bdist.linux-armv7l/wheel/galaxy_ext/expressions 2024-07-03T14:23:06,970 copying build/lib/galaxy_ext/expressions/handle_job.py -> build/bdist.linux-armv7l/wheel/galaxy_ext/expressions 2024-07-03T14:23:06,972 copying build/lib/galaxy_ext/expressions/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy_ext/expressions 2024-07-03T14:23:06,973 running install_egg_info 2024-07-03T14:23:06,986 Copying galaxy_app.egg-info to build/bdist.linux-armv7l/wheel/galaxy_app-24.1.1-py3.11.egg-info 2024-07-03T14:23:06,998 running install_scripts 2024-07-03T14:23:07,032 creating build/bdist.linux-armv7l/wheel/galaxy_app-24.1.1.dist-info/WHEEL 2024-07-03T14:23:07,034 creating '/tmp/pip-wheel-v6v76lrm/.tmp-rr334ia9/galaxy_app-24.1.1-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2024-07-03T14:23:07,037 adding 'galaxy/__init__.py' 2024-07-03T14:23:07,041 adding 'galaxy/app.py' 2024-07-03T14:23:07,043 adding 'galaxy/config_watchers.py' 2024-07-03T14:23:07,045 adding 'galaxy/di.py' 2024-07-03T14:23:07,047 adding 'galaxy/main.py' 2024-07-03T14:23:07,048 adding 'galaxy/main_config.py' 2024-07-03T14:23:07,049 adding 'galaxy/py.typed' 2024-07-03T14:23:07,052 adding 'galaxy/queue_worker.py' 2024-07-03T14:23:07,053 adding 'galaxy/queues.py' 2024-07-03T14:23:07,055 adding 'galaxy/structured_app.py' 2024-07-03T14:23:07,056 adding 'galaxy/actions/__init__.py' 2024-07-03T14:23:07,059 adding 'galaxy/actions/library.py' 2024-07-03T14:23:07,060 adding 'galaxy/app_unittest_utils/__init__.py' 2024-07-03T14:23:07,063 adding 'galaxy/app_unittest_utils/galaxy_mock.py' 2024-07-03T14:23:07,064 adding 'galaxy/app_unittest_utils/toolbox_support.py' 2024-07-03T14:23:07,066 adding 'galaxy/app_unittest_utils/tools_support.py' 2024-07-03T14:23:07,068 adding 'galaxy/authnz/__init__.py' 2024-07-03T14:23:07,071 adding 'galaxy/authnz/custos_authnz.py' 2024-07-03T14:23:07,074 adding 'galaxy/authnz/managers.py' 2024-07-03T14:23:07,077 adding 'galaxy/authnz/psa_authnz.py' 2024-07-03T14:23:07,079 adding 'galaxy/authnz/util.py' 2024-07-03T14:23:07,080 adding 'galaxy/carbon_emissions/__init__.py' 2024-07-03T14:23:07,082 adding 'galaxy/carbon_emissions/carbon_intensity.csv' 2024-07-03T14:23:07,084 adding 'galaxy/celery/__init__.py' 2024-07-03T14:23:07,086 adding 'galaxy/celery/_serialization.py' 2024-07-03T14:23:07,087 adding 'galaxy/celery/base_task.py' 2024-07-03T14:23:07,090 adding 'galaxy/celery/tasks.py' 2024-07-03T14:23:07,092 adding 'galaxy/dependencies/__init__.py' 2024-07-03T14:23:07,093 adding 'galaxy/dependencies/conditional-requirements.txt' 2024-07-03T14:23:07,095 adding 'galaxy/dependencies/dev-requirements.txt' 2024-07-03T14:23:07,096 adding 'galaxy/dependencies/lint-requirements.txt' 2024-07-03T14:23:07,097 adding 'galaxy/dependencies/pinned-lint-requirements.txt' 2024-07-03T14:23:07,099 adding 'galaxy/dependencies/pinned-requirements.txt' 2024-07-03T14:23:07,101 adding 'galaxy/dependencies/pinned-typecheck-requirements.txt' 2024-07-03T14:23:07,102 adding 'galaxy/dependencies/update.sh' 2024-07-03T14:23:07,103 adding 'galaxy/dependencies/update_lint_requirements.sh' 2024-07-03T14:23:07,104 adding 'galaxy/forms/__init__.py' 2024-07-03T14:23:07,106 adding 'galaxy/forms/forms.py' 2024-07-03T14:23:07,122 adding 'galaxy/jobs/__init__.py' 2024-07-03T14:23:07,125 adding 'galaxy/jobs/command_factory.py' 2024-07-03T14:23:07,132 adding 'galaxy/jobs/dynamic_tool_destination.py' 2024-07-03T14:23:07,139 adding 'galaxy/jobs/handler.py' 2024-07-03T14:23:07,141 adding 'galaxy/jobs/manager.py' 2024-07-03T14:23:07,143 adding 'galaxy/jobs/mapper.py' 2024-07-03T14:23:07,145 adding 'galaxy/jobs/rule_helper.py' 2024-07-03T14:23:07,146 adding 'galaxy/jobs/stock_rules.py' 2024-07-03T14:23:07,147 adding 'galaxy/jobs/rules/__init__.py' 2024-07-03T14:23:07,153 adding 'galaxy/jobs/runners/__init__.py' 2024-07-03T14:23:07,156 adding 'galaxy/jobs/runners/aws.py' 2024-07-03T14:23:07,158 adding 'galaxy/jobs/runners/chronos.py' 2024-07-03T14:23:07,160 adding 'galaxy/jobs/runners/cli.py' 2024-07-03T14:23:07,162 adding 'galaxy/jobs/runners/condor.py' 2024-07-03T14:23:07,165 adding 'galaxy/jobs/runners/drmaa.py' 2024-07-03T14:23:07,167 adding 'galaxy/jobs/runners/godocker.py' 2024-07-03T14:23:07,173 adding 'galaxy/jobs/runners/kubernetes.py' 2024-07-03T14:23:07,175 adding 'galaxy/jobs/runners/local.py' 2024-07-03T14:23:07,178 adding 'galaxy/jobs/runners/pbs.py' 2024-07-03T14:23:07,184 adding 'galaxy/jobs/runners/pulsar.py' 2024-07-03T14:23:07,186 adding 'galaxy/jobs/runners/slurm.py' 2024-07-03T14:23:07,187 adding 'galaxy/jobs/runners/state_handler_factory.py' 2024-07-03T14:23:07,189 adding 'galaxy/jobs/runners/tasks.py' 2024-07-03T14:23:07,193 adding 'galaxy/jobs/runners/univa.py' 2024-07-03T14:23:07,195 adding 'galaxy/jobs/runners/state_handlers/__init__.py' 2024-07-03T14:23:07,196 adding 'galaxy/jobs/runners/state_handlers/_safe_eval.py' 2024-07-03T14:23:07,198 adding 'galaxy/jobs/runners/state_handlers/resubmit.py' 2024-07-03T14:23:07,200 adding 'galaxy/jobs/runners/util/__init__.py' 2024-07-03T14:23:07,201 adding 'galaxy/jobs/runners/util/env.py' 2024-07-03T14:23:07,202 adding 'galaxy/jobs/runners/util/external.py' 2024-07-03T14:23:07,203 adding 'galaxy/jobs/runners/util/fork_safe_write.py' 2024-07-03T14:23:07,205 adding 'galaxy/jobs/runners/util/kill.py' 2024-07-03T14:23:07,206 adding 'galaxy/jobs/runners/util/process_groups.py' 2024-07-03T14:23:07,208 adding 'galaxy/jobs/runners/util/pykube_util.py' 2024-07-03T14:23:07,209 adding 'galaxy/jobs/runners/util/sudo.py' 2024-07-03T14:23:07,211 adding 'galaxy/jobs/runners/util/cli/__init__.py' 2024-07-03T14:23:07,212 adding 'galaxy/jobs/runners/util/cli/factory.py' 2024-07-03T14:23:07,214 adding 'galaxy/jobs/runners/util/cli/job/__init__.py' 2024-07-03T14:23:07,216 adding 'galaxy/jobs/runners/util/cli/job/lsf.py' 2024-07-03T14:23:07,217 adding 'galaxy/jobs/runners/util/cli/job/pbs.py' 2024-07-03T14:23:07,218 adding 'galaxy/jobs/runners/util/cli/job/slurm.py' 2024-07-03T14:23:07,220 adding 'galaxy/jobs/runners/util/cli/job/slurm_torque.py' 2024-07-03T14:23:07,221 adding 'galaxy/jobs/runners/util/cli/job/torque.py' 2024-07-03T14:23:07,223 adding 'galaxy/jobs/runners/util/cli/shell/__init__.py' 2024-07-03T14:23:07,224 adding 'galaxy/jobs/runners/util/cli/shell/local.py' 2024-07-03T14:23:07,226 adding 'galaxy/jobs/runners/util/cli/shell/rsh.py' 2024-07-03T14:23:07,227 adding 'galaxy/jobs/runners/util/condor/__init__.py' 2024-07-03T14:23:07,229 adding 'galaxy/jobs/runners/util/job_script/CLUSTER_SLOTS_STATEMENT.sh' 2024-07-03T14:23:07,231 adding 'galaxy/jobs/runners/util/job_script/DEFAULT_JOB_FILE_TEMPLATE.sh' 2024-07-03T14:23:07,232 adding 'galaxy/jobs/runners/util/job_script/MEMORY_STATEMENT_TEMPLATE.sh' 2024-07-03T14:23:07,233 adding 'galaxy/jobs/runners/util/job_script/__init__.py' 2024-07-03T14:23:07,235 adding 'galaxy/jobs/splitters/__init__.py' 2024-07-03T14:23:07,236 adding 'galaxy/jobs/splitters/basic.py' 2024-07-03T14:23:07,238 adding 'galaxy/jobs/splitters/multi.py' 2024-07-03T14:23:07,240 adding 'galaxy/managers/__init__.py' 2024-07-03T14:23:07,242 adding 'galaxy/managers/_config_templates.py' 2024-07-03T14:23:07,243 adding 'galaxy/managers/annotatable.py' 2024-07-03T14:23:07,244 adding 'galaxy/managers/api_keys.py' 2024-07-03T14:23:07,251 adding 'galaxy/managers/base.py' 2024-07-03T14:23:07,253 adding 'galaxy/managers/citations.py' 2024-07-03T14:23:07,255 adding 'galaxy/managers/cloud.py' 2024-07-03T14:23:07,257 adding 'galaxy/managers/cloudauthzs.py' 2024-07-03T14:23:07,261 adding 'galaxy/managers/collections.py' 2024-07-03T14:23:07,263 adding 'galaxy/managers/collections_util.py' 2024-07-03T14:23:07,265 adding 'galaxy/managers/configuration.py' 2024-07-03T14:23:07,267 adding 'galaxy/managers/context.py' 2024-07-03T14:23:07,271 adding 'galaxy/managers/datasets.py' 2024-07-03T14:23:07,273 adding 'galaxy/managers/datatypes.py' 2024-07-03T14:23:07,275 adding 'galaxy/managers/dbkeys.py' 2024-07-03T14:23:07,276 adding 'galaxy/managers/deletable.py' 2024-07-03T14:23:07,278 adding 'galaxy/managers/display_applications.py' 2024-07-03T14:23:07,279 adding 'galaxy/managers/executables.py' 2024-07-03T14:23:07,280 adding 'galaxy/managers/export_tracker.py' 2024-07-03T14:23:07,283 adding 'galaxy/managers/file_source_instances.py' 2024-07-03T14:23:07,285 adding 'galaxy/managers/folders.py' 2024-07-03T14:23:07,287 adding 'galaxy/managers/forms.py' 2024-07-03T14:23:07,288 adding 'galaxy/managers/genomes.py' 2024-07-03T14:23:07,290 adding 'galaxy/managers/group_roles.py' 2024-07-03T14:23:07,291 adding 'galaxy/managers/group_users.py' 2024-07-03T14:23:07,292 adding 'galaxy/managers/groups.py' 2024-07-03T14:23:07,296 adding 'galaxy/managers/hdas.py' 2024-07-03T14:23:07,298 adding 'galaxy/managers/hdcas.py' 2024-07-03T14:23:07,303 adding 'galaxy/managers/histories.py' 2024-07-03T14:23:07,306 adding 'galaxy/managers/history_contents.py' 2024-07-03T14:23:07,308 adding 'galaxy/managers/interactivetool.py' 2024-07-03T14:23:07,310 adding 'galaxy/managers/item_tags.py' 2024-07-03T14:23:07,312 adding 'galaxy/managers/job_connections.py' 2024-07-03T14:23:07,317 adding 'galaxy/managers/jobs.py' 2024-07-03T14:23:07,318 adding 'galaxy/managers/lddas.py' 2024-07-03T14:23:07,320 adding 'galaxy/managers/libraries.py' 2024-07-03T14:23:07,322 adding 'galaxy/managers/library_datasets.py' 2024-07-03T14:23:07,333 adding 'galaxy/managers/licenses.json' 2024-07-03T14:23:07,335 adding 'galaxy/managers/licenses.py' 2024-07-03T14:23:07,336 adding 'galaxy/managers/markdown_export_base.css' 2024-07-03T14:23:07,338 adding 'galaxy/managers/markdown_parse.py' 2024-07-03T14:23:07,342 adding 'galaxy/managers/markdown_util.py' 2024-07-03T14:23:07,344 adding 'galaxy/managers/metrics.py' 2024-07-03T14:23:07,346 adding 'galaxy/managers/model_stores.py' 2024-07-03T14:23:07,349 adding 'galaxy/managers/notification.py' 2024-07-03T14:23:07,352 adding 'galaxy/managers/object_store_instances.py' 2024-07-03T14:23:07,355 adding 'galaxy/managers/pages.py' 2024-07-03T14:23:07,357 adding 'galaxy/managers/quotas.py' 2024-07-03T14:23:07,358 adding 'galaxy/managers/ratable.py' 2024-07-03T14:23:07,360 adding 'galaxy/managers/rbac_secured.py' 2024-07-03T14:23:07,361 adding 'galaxy/managers/remote_files.py' 2024-07-03T14:23:07,363 adding 'galaxy/managers/roles.py' 2024-07-03T14:23:07,364 adding 'galaxy/managers/secured.py' 2024-07-03T14:23:07,366 adding 'galaxy/managers/session.py' 2024-07-03T14:23:07,369 adding 'galaxy/managers/sharable.py' 2024-07-03T14:23:07,370 adding 'galaxy/managers/taggable.py' 2024-07-03T14:23:07,371 adding 'galaxy/managers/tags.py' 2024-07-03T14:23:07,373 adding 'galaxy/managers/tasks.py' 2024-07-03T14:23:07,374 adding 'galaxy/managers/tool_data.py' 2024-07-03T14:23:07,376 adding 'galaxy/managers/tools.py' 2024-07-03T14:23:07,381 adding 'galaxy/managers/users.py' 2024-07-03T14:23:07,382 adding 'galaxy/managers/visualizations.py' 2024-07-03T14:23:07,394 adding 'galaxy/managers/workflows.py' 2024-07-03T14:23:07,397 adding 'galaxy/short_term_storage/__init__.py' 2024-07-03T14:23:07,399 adding 'galaxy/tool_shed/__init__.py' 2024-07-03T14:23:07,400 adding 'galaxy/tool_shed/cache.py' 2024-07-03T14:23:07,401 adding 'galaxy/tool_shed/repository_type.py' 2024-07-03T14:23:07,403 adding 'galaxy/tool_shed/galaxy_install/__init__.py' 2024-07-03T14:23:07,405 adding 'galaxy/tool_shed/galaxy_install/client.py' 2024-07-03T14:23:07,410 adding 'galaxy/tool_shed/galaxy_install/install_manager.py' 2024-07-03T14:23:07,415 adding 'galaxy/tool_shed/galaxy_install/installed_repository_manager.py' 2024-07-03T14:23:07,417 adding 'galaxy/tool_shed/galaxy_install/update_repository_manager.py' 2024-07-03T14:23:07,419 adding 'galaxy/tool_shed/galaxy_install/metadata/__init__.py' 2024-07-03T14:23:07,420 adding 'galaxy/tool_shed/galaxy_install/metadata/installed_repository_metadata_manager.py' 2024-07-03T14:23:07,422 adding 'galaxy/tool_shed/galaxy_install/repository_dependencies/__init__.py' 2024-07-03T14:23:07,425 adding 'galaxy/tool_shed/galaxy_install/repository_dependencies/repository_dependency_manager.py' 2024-07-03T14:23:07,427 adding 'galaxy/tool_shed/galaxy_install/tools/__init__.py' 2024-07-03T14:23:07,429 adding 'galaxy/tool_shed/galaxy_install/tools/data_manager.py' 2024-07-03T14:23:07,432 adding 'galaxy/tool_shed/galaxy_install/tools/tool_panel_manager.py' 2024-07-03T14:23:07,434 adding 'galaxy/tool_shed/metadata/__init__.py' 2024-07-03T14:23:07,440 adding 'galaxy/tool_shed/metadata/metadata_generator.py' 2024-07-03T14:23:07,442 adding 'galaxy/tool_shed/tools/__init__.py' 2024-07-03T14:23:07,444 adding 'galaxy/tool_shed/tools/data_table_manager.py' 2024-07-03T14:23:07,445 adding 'galaxy/tool_shed/tools/tool_validator.py' 2024-07-03T14:23:07,448 adding 'galaxy/tool_shed/unittest_utils/__init__.py' 2024-07-03T14:23:07,450 adding 'galaxy/tool_shed/util/__init__.py' 2024-07-03T14:23:07,451 adding 'galaxy/tool_shed/util/basic_util.py' 2024-07-03T14:23:07,452 adding 'galaxy/tool_shed/util/container_util.py' 2024-07-03T14:23:07,455 adding 'galaxy/tool_shed/util/dependency_display.py' 2024-07-03T14:23:07,456 adding 'galaxy/tool_shed/util/hg_util.py' 2024-07-03T14:23:07,458 adding 'galaxy/tool_shed/util/metadata_util.py' 2024-07-03T14:23:07,461 adding 'galaxy/tool_shed/util/repository_util.py' 2024-07-03T14:23:07,463 adding 'galaxy/tool_shed/util/shed_util_common.py' 2024-07-03T14:23:07,465 adding 'galaxy/tool_shed/util/tool_dependency_util.py' 2024-07-03T14:23:07,467 adding 'galaxy/tool_shed/util/tool_util.py' 2024-07-03T14:23:07,471 adding 'galaxy/tool_shed/util/utility_container_manager.py' 2024-07-03T14:23:07,495 adding 'galaxy/tools/__init__.py' 2024-07-03T14:23:07,497 adding 'galaxy/tools/apply_rules.xml' 2024-07-03T14:23:07,498 adding 'galaxy/tools/biotools.py' 2024-07-03T14:23:07,500 adding 'galaxy/tools/build_list.xml' 2024-07-03T14:23:07,501 adding 'galaxy/tools/build_list_1.2.0.xml' 2024-07-03T14:23:07,503 adding 'galaxy/tools/cache.py' 2024-07-03T14:23:07,504 adding 'galaxy/tools/cross_product_flat.xml' 2024-07-03T14:23:07,506 adding 'galaxy/tools/cross_product_nested.xml' 2024-07-03T14:23:07,509 adding 'galaxy/tools/data_fetch.py' 2024-07-03T14:23:07,511 adding 'galaxy/tools/data_fetch.xml' 2024-07-03T14:23:07,512 adding 'galaxy/tools/duplicate_file_to_collection.xml' 2024-07-03T14:23:07,514 adding 'galaxy/tools/errors.py' 2024-07-03T14:23:07,518 adding 'galaxy/tools/evaluation.py' 2024-07-03T14:23:07,520 adding 'galaxy/tools/exception_handling.py' 2024-07-03T14:23:07,523 adding 'galaxy/tools/execute.py' 2024-07-03T14:23:07,525 adding 'galaxy/tools/extract_dataset.xml' 2024-07-03T14:23:07,526 adding 'galaxy/tools/filter_empty_collection.xml' 2024-07-03T14:23:07,527 adding 'galaxy/tools/filter_failed_collection.xml' 2024-07-03T14:23:07,529 adding 'galaxy/tools/filter_from_file.xml' 2024-07-03T14:23:07,531 adding 'galaxy/tools/flatten_collection.xml' 2024-07-03T14:23:07,532 adding 'galaxy/tools/harmonize_two_collections_list.xml' 2024-07-03T14:23:07,533 adding 'galaxy/tools/keep_success_collection.xml' 2024-07-03T14:23:07,535 adding 'galaxy/tools/merge_collection.xml' 2024-07-03T14:23:07,536 adding 'galaxy/tools/model_operation_macros.xml' 2024-07-03T14:23:07,539 adding 'galaxy/tools/recommendations.py' 2024-07-03T14:23:07,540 adding 'galaxy/tools/relabel_from_file.xml' 2024-07-03T14:23:07,542 adding 'galaxy/tools/remote_tool_eval.py' 2024-07-03T14:23:07,543 adding 'galaxy/tools/repositories.py' 2024-07-03T14:23:07,545 adding 'galaxy/tools/sort_collection_list.xml' 2024-07-03T14:23:07,546 adding 'galaxy/tools/special_tools.py' 2024-07-03T14:23:07,547 adding 'galaxy/tools/tag_collection_from_file.xml' 2024-07-03T14:23:07,550 adding 'galaxy/tools/test.py' 2024-07-03T14:23:07,551 adding 'galaxy/tools/unzip_collection.xml' 2024-07-03T14:23:07,555 adding 'galaxy/tools/wrappers.py' 2024-07-03T14:23:07,556 adding 'galaxy/tools/zip_collection.xml' 2024-07-03T14:23:07,564 adding 'galaxy/tools/actions/__init__.py' 2024-07-03T14:23:07,565 adding 'galaxy/tools/actions/data_manager.py' 2024-07-03T14:23:07,566 adding 'galaxy/tools/actions/data_source.py' 2024-07-03T14:23:07,568 adding 'galaxy/tools/actions/history_imp_exp.py' 2024-07-03T14:23:07,569 adding 'galaxy/tools/actions/metadata.py' 2024-07-03T14:23:07,571 adding 'galaxy/tools/actions/model_operations.py' 2024-07-03T14:23:07,572 adding 'galaxy/tools/actions/upload.py' 2024-07-03T14:23:07,575 adding 'galaxy/tools/actions/upload_common.py' 2024-07-03T14:23:07,577 adding 'galaxy/tools/bundled/__init__.py' 2024-07-03T14:23:07,578 adding 'galaxy/tools/bundled/data_export/export_remote.py' 2024-07-03T14:23:07,580 adding 'galaxy/tools/bundled/data_export/export_remote.xml' 2024-07-03T14:23:07,581 adding 'galaxy/tools/bundled/data_export/send.py' 2024-07-03T14:23:07,582 adding 'galaxy/tools/bundled/data_export/send.xml' 2024-07-03T14:23:07,585 adding 'galaxy/tools/bundled/data_source/__init__.py' 2024-07-03T14:23:07,586 adding 'galaxy/tools/bundled/data_source/access_libraries.xml' 2024-07-03T14:23:07,587 adding 'galaxy/tools/bundled/data_source/biomart.xml' 2024-07-03T14:23:07,588 adding 'galaxy/tools/bundled/data_source/biomart_test.xml' 2024-07-03T14:23:07,590 adding 'galaxy/tools/bundled/data_source/cbi_rice_mart.xml' 2024-07-03T14:23:07,591 adding 'galaxy/tools/bundled/data_source/data_source.py' 2024-07-03T14:23:07,592 adding 'galaxy/tools/bundled/data_source/ebi_sra.xml' 2024-07-03T14:23:07,593 adding 'galaxy/tools/bundled/data_source/eupathdb.xml' 2024-07-03T14:23:07,595 adding 'galaxy/tools/bundled/data_source/fly_modencode.xml' 2024-07-03T14:23:07,596 adding 'galaxy/tools/bundled/data_source/flymine.xml' 2024-07-03T14:23:07,597 adding 'galaxy/tools/bundled/data_source/flymine_test.xml' 2024-07-03T14:23:07,599 adding 'galaxy/tools/bundled/data_source/genbank.py' 2024-07-03T14:23:07,600 adding 'galaxy/tools/bundled/data_source/genbank.xml' 2024-07-03T14:23:07,601 adding 'galaxy/tools/bundled/data_source/gramene_mart.xml' 2024-07-03T14:23:07,602 adding 'galaxy/tools/bundled/data_source/hapmapmart.xml' 2024-07-03T14:23:07,604 adding 'galaxy/tools/bundled/data_source/hbvar.xml' 2024-07-03T14:23:07,605 adding 'galaxy/tools/bundled/data_source/import.py' 2024-07-03T14:23:07,606 adding 'galaxy/tools/bundled/data_source/import.xml' 2024-07-03T14:23:07,608 adding 'galaxy/tools/bundled/data_source/intermine.xml' 2024-07-03T14:23:07,609 adding 'galaxy/tools/bundled/data_source/metabolicmine.xml' 2024-07-03T14:23:07,610 adding 'galaxy/tools/bundled/data_source/microbial_import.py' 2024-07-03T14:23:07,612 adding 'galaxy/tools/bundled/data_source/microbial_import.xml' 2024-07-03T14:23:07,613 adding 'galaxy/tools/bundled/data_source/microbial_import_code.py' 2024-07-03T14:23:07,615 adding 'galaxy/tools/bundled/data_source/modmine.xml' 2024-07-03T14:23:07,616 adding 'galaxy/tools/bundled/data_source/mousemine.xml' 2024-07-03T14:23:07,617 adding 'galaxy/tools/bundled/data_source/ncbi_datasets.xml' 2024-07-03T14:23:07,618 adding 'galaxy/tools/bundled/data_source/ratmine.xml' 2024-07-03T14:23:07,620 adding 'galaxy/tools/bundled/data_source/sra.xml' 2024-07-03T14:23:07,621 adding 'galaxy/tools/bundled/data_source/ucsc_tablebrowser.xml' 2024-07-03T14:23:07,622 adding 'galaxy/tools/bundled/data_source/ucsc_tablebrowser_archaea.xml' 2024-07-03T14:23:07,623 adding 'galaxy/tools/bundled/data_source/ucsc_tablebrowser_test.xml' 2024-07-03T14:23:07,626 adding 'galaxy/tools/bundled/data_source/upload.py' 2024-07-03T14:23:07,628 adding 'galaxy/tools/bundled/data_source/upload.xml' 2024-07-03T14:23:07,629 adding 'galaxy/tools/bundled/data_source/worm_modencode.xml' 2024-07-03T14:23:07,630 adding 'galaxy/tools/bundled/data_source/wormbase.xml' 2024-07-03T14:23:07,631 adding 'galaxy/tools/bundled/data_source/wormbase_test.xml' 2024-07-03T14:23:07,633 adding 'galaxy/tools/bundled/data_source/yeastmine.xml' 2024-07-03T14:23:07,634 adding 'galaxy/tools/bundled/data_source/zebrafishmine.xml' 2024-07-03T14:23:07,635 adding 'galaxy/tools/bundled/expression_tools/expression_macros.xml' 2024-07-03T14:23:07,636 adding 'galaxy/tools/bundled/expression_tools/parse_values_from_file.xml' 2024-07-03T14:23:07,638 adding 'galaxy/tools/bundled/expression_tools/pick_value.xml' 2024-07-03T14:23:07,640 adding 'galaxy/tools/bundled/extract/__init__.py' 2024-07-03T14:23:07,642 adding 'galaxy/tools/bundled/extract/extract_genomic_dna.py' 2024-07-03T14:23:07,643 adding 'galaxy/tools/bundled/extract/extract_genomic_dna.xml' 2024-07-03T14:23:07,645 adding 'galaxy/tools/bundled/extract/liftOver_wrapper.py' 2024-07-03T14:23:07,646 adding 'galaxy/tools/bundled/extract/liftOver_wrapper.xml' 2024-07-03T14:23:07,650 adding 'galaxy/tools/bundled/filters/CreateInterval.pl' 2024-07-03T14:23:07,651 adding 'galaxy/tools/bundled/filters/CreateInterval.xml' 2024-07-03T14:23:07,652 adding 'galaxy/tools/bundled/filters/__init__.py' 2024-07-03T14:23:07,653 adding 'galaxy/tools/bundled/filters/axt_to_concat_fasta.py' 2024-07-03T14:23:07,654 adding 'galaxy/tools/bundled/filters/axt_to_concat_fasta.xml' 2024-07-03T14:23:07,656 adding 'galaxy/tools/bundled/filters/axt_to_fasta.py' 2024-07-03T14:23:07,657 adding 'galaxy/tools/bundled/filters/axt_to_fasta.xml' 2024-07-03T14:23:07,659 adding 'galaxy/tools/bundled/filters/axt_to_lav.py' 2024-07-03T14:23:07,660 adding 'galaxy/tools/bundled/filters/axt_to_lav.xml' 2024-07-03T14:23:07,661 adding 'galaxy/tools/bundled/filters/axt_to_lav_code.py' 2024-07-03T14:23:07,663 adding 'galaxy/tools/bundled/filters/bed2gff.xml' 2024-07-03T14:23:07,664 adding 'galaxy/tools/bundled/filters/bed_to_bigbed.xml' 2024-07-03T14:23:07,665 adding 'galaxy/tools/bundled/filters/bed_to_gff_converter.py' 2024-07-03T14:23:07,667 adding 'galaxy/tools/bundled/filters/catWrapper.py' 2024-07-03T14:23:07,668 adding 'galaxy/tools/bundled/filters/catWrapper.xml' 2024-07-03T14:23:07,669 adding 'galaxy/tools/bundled/filters/changeCase.pl' 2024-07-03T14:23:07,671 adding 'galaxy/tools/bundled/filters/changeCase.xml' 2024-07-03T14:23:07,672 adding 'galaxy/tools/bundled/filters/commWrapper.pl' 2024-07-03T14:23:07,673 adding 'galaxy/tools/bundled/filters/commWrapper.xml' 2024-07-03T14:23:07,674 adding 'galaxy/tools/bundled/filters/compare.xml' 2024-07-03T14:23:07,676 adding 'galaxy/tools/bundled/filters/condense_characters.pl' 2024-07-03T14:23:07,677 adding 'galaxy/tools/bundled/filters/condense_characters.xml' 2024-07-03T14:23:07,679 adding 'galaxy/tools/bundled/filters/convert_characters.py' 2024-07-03T14:23:07,680 adding 'galaxy/tools/bundled/filters/convert_characters.xml' 2024-07-03T14:23:07,681 adding 'galaxy/tools/bundled/filters/cutWrapper.pl' 2024-07-03T14:23:07,683 adding 'galaxy/tools/bundled/filters/cutWrapper.xml' 2024-07-03T14:23:07,684 adding 'galaxy/tools/bundled/filters/fileGrep.xml' 2024-07-03T14:23:07,686 adding 'galaxy/tools/bundled/filters/fixedValueColumn.pl' 2024-07-03T14:23:07,687 adding 'galaxy/tools/bundled/filters/fixedValueColumn.xml' 2024-07-03T14:23:07,688 adding 'galaxy/tools/bundled/filters/gff2bed.xml' 2024-07-03T14:23:07,690 adding 'galaxy/tools/bundled/filters/gff_to_bed_converter.py' 2024-07-03T14:23:07,691 adding 'galaxy/tools/bundled/filters/grep.py' 2024-07-03T14:23:07,693 adding 'galaxy/tools/bundled/filters/grep.xml' 2024-07-03T14:23:07,694 adding 'galaxy/tools/bundled/filters/grep_1.0.1.xml' 2024-07-03T14:23:07,696 adding 'galaxy/tools/bundled/filters/gtf2bedgraph.xml' 2024-07-03T14:23:07,697 adding 'galaxy/tools/bundled/filters/gtf_to_bedgraph_converter.py' 2024-07-03T14:23:07,698 adding 'galaxy/tools/bundled/filters/headWrapper.xml' 2024-07-03T14:23:07,701 adding 'galaxy/tools/bundled/filters/join.py' 2024-07-03T14:23:07,702 adding 'galaxy/tools/bundled/filters/joinWrapper.py' 2024-07-03T14:23:07,703 adding 'galaxy/tools/bundled/filters/joiner.xml' 2024-07-03T14:23:07,705 adding 'galaxy/tools/bundled/filters/joiner2.xml' 2024-07-03T14:23:07,706 adding 'galaxy/tools/bundled/filters/lav_to_bed.py' 2024-07-03T14:23:07,707 adding 'galaxy/tools/bundled/filters/lav_to_bed.xml' 2024-07-03T14:23:07,708 adding 'galaxy/tools/bundled/filters/lav_to_bed_code.py' 2024-07-03T14:23:07,710 adding 'galaxy/tools/bundled/filters/mergeCols.py' 2024-07-03T14:23:07,711 adding 'galaxy/tools/bundled/filters/mergeCols.xml' 2024-07-03T14:23:07,712 adding 'galaxy/tools/bundled/filters/pasteWrapper.pl' 2024-07-03T14:23:07,713 adding 'galaxy/tools/bundled/filters/pasteWrapper.xml' 2024-07-03T14:23:07,715 adding 'galaxy/tools/bundled/filters/random_lines_two_pass.py' 2024-07-03T14:23:07,716 adding 'galaxy/tools/bundled/filters/randomlines.py' 2024-07-03T14:23:07,717 adding 'galaxy/tools/bundled/filters/randomlines.xml' 2024-07-03T14:23:07,719 adding 'galaxy/tools/bundled/filters/remove_beginning.pl' 2024-07-03T14:23:07,720 adding 'galaxy/tools/bundled/filters/remove_beginning.xml' 2024-07-03T14:23:07,721 adding 'galaxy/tools/bundled/filters/secure_hash_message_digest.py' 2024-07-03T14:23:07,722 adding 'galaxy/tools/bundled/filters/secure_hash_message_digest.xml' 2024-07-03T14:23:07,728 adding 'galaxy/tools/bundled/filters/sff_extract.py' 2024-07-03T14:23:07,730 adding 'galaxy/tools/bundled/filters/sff_extractor.xml' 2024-07-03T14:23:07,731 adding 'galaxy/tools/bundled/filters/sorter.py' 2024-07-03T14:23:07,733 adding 'galaxy/tools/bundled/filters/sorter.xml' 2024-07-03T14:23:07,734 adding 'galaxy/tools/bundled/filters/tailWrapper.xml' 2024-07-03T14:23:07,736 adding 'galaxy/tools/bundled/filters/trimmer.py' 2024-07-03T14:23:07,737 adding 'galaxy/tools/bundled/filters/trimmer.xml' 2024-07-03T14:23:07,739 adding 'galaxy/tools/bundled/filters/ucsc_gene_bed_to_exon_bed.py' 2024-07-03T14:23:07,740 adding 'galaxy/tools/bundled/filters/ucsc_gene_bed_to_exon_bed.xml' 2024-07-03T14:23:07,742 adding 'galaxy/tools/bundled/filters/ucsc_gene_bed_to_intron_bed.py' 2024-07-03T14:23:07,743 adding 'galaxy/tools/bundled/filters/ucsc_gene_bed_to_intron_bed.xml' 2024-07-03T14:23:07,745 adding 'galaxy/tools/bundled/filters/ucsc_gene_table_to_intervals.py' 2024-07-03T14:23:07,747 adding 'galaxy/tools/bundled/filters/ucsc_gene_table_to_intervals.xml' 2024-07-03T14:23:07,748 adding 'galaxy/tools/bundled/filters/uniq.py' 2024-07-03T14:23:07,750 adding 'galaxy/tools/bundled/filters/uniq.xml' 2024-07-03T14:23:07,751 adding 'galaxy/tools/bundled/filters/wc_gnu.xml' 2024-07-03T14:23:07,753 adding 'galaxy/tools/bundled/filters/wig_to_bigwig.xml' 2024-07-03T14:23:07,754 adding 'galaxy/tools/bundled/filters/wiggle_to_simple.py' 2024-07-03T14:23:07,756 adding 'galaxy/tools/bundled/filters/wiggle_to_simple.xml' 2024-07-03T14:23:07,757 adding 'galaxy/tools/bundled/filters/gff/__init__.py' 2024-07-03T14:23:07,759 adding 'galaxy/tools/bundled/filters/gff/extract_GFF_Features.py' 2024-07-03T14:23:07,760 adding 'galaxy/tools/bundled/filters/gff/extract_GFF_Features.xml' 2024-07-03T14:23:07,762 adding 'galaxy/tools/bundled/filters/gff/gff_filter_by_attribute.py' 2024-07-03T14:23:07,763 adding 'galaxy/tools/bundled/filters/gff/gff_filter_by_attribute.xml' 2024-07-03T14:23:07,765 adding 'galaxy/tools/bundled/filters/gff/gff_filter_by_feature_count.py' 2024-07-03T14:23:07,766 adding 'galaxy/tools/bundled/filters/gff/gff_filter_by_feature_count.xml' 2024-07-03T14:23:07,767 adding 'galaxy/tools/bundled/filters/gff/gtf_filter_by_attribute_values_list.py' 2024-07-03T14:23:07,769 adding 'galaxy/tools/bundled/filters/gff/gtf_filter_by_attribute_values_list.xml' 2024-07-03T14:23:07,771 adding 'galaxy/tools/bundled/interactive/default_notebook.ipynb' 2024-07-03T14:23:07,772 adding 'galaxy/tools/bundled/interactive/interactivetool_askomics.xml' 2024-07-03T14:23:07,773 adding 'galaxy/tools/bundled/interactive/interactivetool_bam_iobio.xml' 2024-07-03T14:23:07,774 adding 'galaxy/tools/bundled/interactive/interactivetool_cellxgene_0.16.2.xml' 2024-07-03T14:23:07,776 adding 'galaxy/tools/bundled/interactive/interactivetool_cellxgene_1.1.1.xml' 2024-07-03T14:23:07,778 adding 'galaxy/tools/bundled/interactive/interactivetool_climate_notebook.xml' 2024-07-03T14:23:07,779 adding 'galaxy/tools/bundled/interactive/interactivetool_ethercalc.xml' 2024-07-03T14:23:07,780 adding 'galaxy/tools/bundled/interactive/interactivetool_geoexplorer.xml' 2024-07-03T14:23:07,781 adding 'galaxy/tools/bundled/interactive/interactivetool_guacamole_desktop.xml' 2024-07-03T14:23:07,782 adding 'galaxy/tools/bundled/interactive/interactivetool_hicbrowser.xml' 2024-07-03T14:23:07,784 adding 'galaxy/tools/bundled/interactive/interactivetool_higlass.xml' 2024-07-03T14:23:07,786 adding 'galaxy/tools/bundled/interactive/interactivetool_isee.xml' 2024-07-03T14:23:07,787 adding 'galaxy/tools/bundled/interactive/interactivetool_jupyter_notebook.xml' 2024-07-03T14:23:07,789 adding 'galaxy/tools/bundled/interactive/interactivetool_jupyter_notebook_1.0.0.xml' 2024-07-03T14:23:07,791 adding 'galaxy/tools/bundled/interactive/interactivetool_metashark.xml' 2024-07-03T14:23:07,792 adding 'galaxy/tools/bundled/interactive/interactivetool_mgnify_notebook.xml' 2024-07-03T14:23:07,794 adding 'galaxy/tools/bundled/interactive/interactivetool_ml_jupyter_notebook.xml' 2024-07-03T14:23:07,796 adding 'galaxy/tools/bundled/interactive/interactivetool_neo4j.xml' 2024-07-03T14:23:07,797 adding 'galaxy/tools/bundled/interactive/interactivetool_openrefine.xml' 2024-07-03T14:23:07,798 adding 'galaxy/tools/bundled/interactive/interactivetool_pangeo_notebook.xml' 2024-07-03T14:23:07,800 adding 'galaxy/tools/bundled/interactive/interactivetool_panoply.xml' 2024-07-03T14:23:07,801 adding 'galaxy/tools/bundled/interactive/interactivetool_paraview.xml' 2024-07-03T14:23:07,802 adding 'galaxy/tools/bundled/interactive/interactivetool_pavian.xml' 2024-07-03T14:23:07,803 adding 'galaxy/tools/bundled/interactive/interactivetool_phinch.xml' 2024-07-03T14:23:07,805 adding 'galaxy/tools/bundled/interactive/interactivetool_pyiron.xml' 2024-07-03T14:23:07,808 adding 'galaxy/tools/bundled/interactive/interactivetool_qiskit_jupyter_notebook.xml' 2024-07-03T14:23:07,809 adding 'galaxy/tools/bundled/interactive/interactivetool_radiant.xml' 2024-07-03T14:23:07,810 adding 'galaxy/tools/bundled/interactive/interactivetool_rstudio.xml' 2024-07-03T14:23:07,812 adding 'galaxy/tools/bundled/interactive/interactivetool_simtext_app.xml' 2024-07-03T14:23:07,813 adding 'galaxy/tools/bundled/interactive/interactivetool_vcf_iobio.xml' 2024-07-03T14:23:07,814 adding 'galaxy/tools/bundled/interactive/interactivetool_vrm_editor.xml' 2024-07-03T14:23:07,816 adding 'galaxy/tools/bundled/interactive/interactivetool_wallace.xml' 2024-07-03T14:23:07,817 adding 'galaxy/tools/bundled/interactive/interactivetool_wilson.xml' 2024-07-03T14:23:07,820 adding 'galaxy/tools/bundled/interactive/simtext_app.R' 2024-07-03T14:23:07,822 adding 'galaxy/tools/bundled/maf/__init__.py' 2024-07-03T14:23:07,824 adding 'galaxy/tools/bundled/maf/genebed_maf_to_fasta.xml' 2024-07-03T14:23:07,825 adding 'galaxy/tools/bundled/maf/interval2maf.py' 2024-07-03T14:23:07,827 adding 'galaxy/tools/bundled/maf/interval2maf.xml' 2024-07-03T14:23:07,828 adding 'galaxy/tools/bundled/maf/interval2maf_pairwise.xml' 2024-07-03T14:23:07,830 adding 'galaxy/tools/bundled/maf/interval_maf_to_merged_fasta.py' 2024-07-03T14:23:07,831 adding 'galaxy/tools/bundled/maf/interval_maf_to_merged_fasta.xml' 2024-07-03T14:23:07,832 adding 'galaxy/tools/bundled/maf/macros.xml' 2024-07-03T14:23:07,833 adding 'galaxy/tools/bundled/maf/maf_by_block_number.py' 2024-07-03T14:23:07,834 adding 'galaxy/tools/bundled/maf/maf_by_block_number.xml' 2024-07-03T14:23:07,836 adding 'galaxy/tools/bundled/maf/maf_filter.py' 2024-07-03T14:23:07,837 adding 'galaxy/tools/bundled/maf/maf_filter.xml' 2024-07-03T14:23:07,839 adding 'galaxy/tools/bundled/maf/maf_limit_size.py' 2024-07-03T14:23:07,840 adding 'galaxy/tools/bundled/maf/maf_limit_size.xml' 2024-07-03T14:23:07,841 adding 'galaxy/tools/bundled/maf/maf_limit_to_species.py' 2024-07-03T14:23:07,843 adding 'galaxy/tools/bundled/maf/maf_limit_to_species.xml' 2024-07-03T14:23:07,844 adding 'galaxy/tools/bundled/maf/maf_reverse_complement.py' 2024-07-03T14:23:07,845 adding 'galaxy/tools/bundled/maf/maf_reverse_complement.xml' 2024-07-03T14:23:07,846 adding 'galaxy/tools/bundled/maf/maf_split_by_species.py' 2024-07-03T14:23:07,848 adding 'galaxy/tools/bundled/maf/maf_split_by_species.xml' 2024-07-03T14:23:07,849 adding 'galaxy/tools/bundled/maf/maf_stats.py' 2024-07-03T14:23:07,851 adding 'galaxy/tools/bundled/maf/maf_stats.xml' 2024-07-03T14:23:07,852 adding 'galaxy/tools/bundled/maf/maf_thread_for_species.py' 2024-07-03T14:23:07,853 adding 'galaxy/tools/bundled/maf/maf_thread_for_species.xml' 2024-07-03T14:23:07,855 adding 'galaxy/tools/bundled/maf/maf_to_bed.py' 2024-07-03T14:23:07,856 adding 'galaxy/tools/bundled/maf/maf_to_bed.xml' 2024-07-03T14:23:07,857 adding 'galaxy/tools/bundled/maf/maf_to_bed_code.py' 2024-07-03T14:23:07,859 adding 'galaxy/tools/bundled/maf/maf_to_fasta.xml' 2024-07-03T14:23:07,860 adding 'galaxy/tools/bundled/maf/maf_to_fasta_concat.py' 2024-07-03T14:23:07,861 adding 'galaxy/tools/bundled/maf/maf_to_fasta_multiple_sets.py' 2024-07-03T14:23:07,863 adding 'galaxy/tools/bundled/maf/maf_to_interval.py' 2024-07-03T14:23:07,864 adding 'galaxy/tools/bundled/maf/maf_to_interval.xml' 2024-07-03T14:23:07,866 adding 'galaxy/tools/bundled/maf/vcf_to_maf_customtrack.py' 2024-07-03T14:23:07,867 adding 'galaxy/tools/bundled/maf/vcf_to_maf_customtrack.xml' 2024-07-03T14:23:07,869 adding 'galaxy/tools/bundled/meme/__init__.py' 2024-07-03T14:23:07,871 adding 'galaxy/tools/bundled/meme/fimo.xml' 2024-07-03T14:23:07,872 adding 'galaxy/tools/bundled/meme/fimo_wrapper.py' 2024-07-03T14:23:07,874 adding 'galaxy/tools/bundled/meme/meme.xml' 2024-07-03T14:23:07,876 adding 'galaxy/tools/bundled/metag_tools/__init__.py' 2024-07-03T14:23:07,877 adding 'galaxy/tools/bundled/metag_tools/blat_wrapper.py' 2024-07-03T14:23:07,879 adding 'galaxy/tools/bundled/metag_tools/blat_wrapper.xml' 2024-07-03T14:23:07,880 adding 'galaxy/tools/bundled/metag_tools/shrimp_color_wrapper.py' 2024-07-03T14:23:07,882 adding 'galaxy/tools/bundled/metag_tools/shrimp_color_wrapper.xml' 2024-07-03T14:23:07,885 adding 'galaxy/tools/bundled/metag_tools/shrimp_wrapper.py' 2024-07-03T14:23:07,887 adding 'galaxy/tools/bundled/metag_tools/shrimp_wrapper.xml' 2024-07-03T14:23:07,889 adding 'galaxy/tools/bundled/next_gen_conversion/bwa_solid2fastq_modified.pl' 2024-07-03T14:23:07,891 adding 'galaxy/tools/bundled/next_gen_conversion/fastq_conversions.py' 2024-07-03T14:23:07,892 adding 'galaxy/tools/bundled/next_gen_conversion/fastq_conversions.xml' 2024-07-03T14:23:07,893 adding 'galaxy/tools/bundled/next_gen_conversion/fastq_gen_conv.py' 2024-07-03T14:23:07,895 adding 'galaxy/tools/bundled/next_gen_conversion/fastq_gen_conv.xml' 2024-07-03T14:23:07,897 adding 'galaxy/tools/bundled/next_gen_conversion/solid2fastq.py' 2024-07-03T14:23:07,898 adding 'galaxy/tools/bundled/next_gen_conversion/solid2fastq.xml' 2024-07-03T14:23:07,899 adding 'galaxy/tools/bundled/next_gen_conversion/solid_to_fastq.py' 2024-07-03T14:23:07,901 adding 'galaxy/tools/bundled/next_gen_conversion/solid_to_fastq.xml' 2024-07-03T14:23:07,902 adding 'galaxy/tools/bundled/ngs_simulation/__init__.py' 2024-07-03T14:23:07,904 adding 'galaxy/tools/bundled/ngs_simulation/ngs_simulation.py' 2024-07-03T14:23:07,906 adding 'galaxy/tools/bundled/ngs_simulation/ngs_simulation.xml' 2024-07-03T14:23:07,908 adding 'galaxy/tools/bundled/phenotype_association/BEAM2_wrapper.sh' 2024-07-03T14:23:07,909 adding 'galaxy/tools/bundled/phenotype_association/__init__.py' 2024-07-03T14:23:07,910 adding 'galaxy/tools/bundled/phenotype_association/beam.xml' 2024-07-03T14:23:07,911 adding 'galaxy/tools/bundled/phenotype_association/gpass.pl' 2024-07-03T14:23:07,913 adding 'galaxy/tools/bundled/phenotype_association/gpass.xml' 2024-07-03T14:23:07,914 adding 'galaxy/tools/bundled/phenotype_association/ldtools.xml' 2024-07-03T14:23:07,916 adding 'galaxy/tools/bundled/phenotype_association/ldtools_wrapper.sh' 2024-07-03T14:23:07,917 adding 'galaxy/tools/bundled/phenotype_association/linkToDavid.pl' 2024-07-03T14:23:07,918 adding 'galaxy/tools/bundled/phenotype_association/linkToDavid.xml' 2024-07-03T14:23:07,920 adding 'galaxy/tools/bundled/phenotype_association/linkToGProfile.pl' 2024-07-03T14:23:07,921 adding 'galaxy/tools/bundled/phenotype_association/linkToGProfile.xml' 2024-07-03T14:23:07,923 adding 'galaxy/tools/bundled/phenotype_association/lped_to_geno.pl' 2024-07-03T14:23:07,925 adding 'galaxy/tools/bundled/phenotype_association/lps.xml' 2024-07-03T14:23:07,926 adding 'galaxy/tools/bundled/phenotype_association/lps_tool_wrapper.sh' 2024-07-03T14:23:07,928 adding 'galaxy/tools/bundled/phenotype_association/master2gd_snp.pl' 2024-07-03T14:23:07,929 adding 'galaxy/tools/bundled/phenotype_association/master2gd_snp.xml' 2024-07-03T14:23:07,931 adding 'galaxy/tools/bundled/phenotype_association/master2pg.pl' 2024-07-03T14:23:07,932 adding 'galaxy/tools/bundled/phenotype_association/master2pg.xml' 2024-07-03T14:23:07,933 adding 'galaxy/tools/bundled/phenotype_association/mergeSnps.pl' 2024-07-03T14:23:07,935 adding 'galaxy/tools/bundled/phenotype_association/pagetag.py' 2024-07-03T14:23:07,937 adding 'galaxy/tools/bundled/phenotype_association/pass.xml' 2024-07-03T14:23:07,938 adding 'galaxy/tools/bundled/phenotype_association/pass_wrapper.sh' 2024-07-03T14:23:07,939 adding 'galaxy/tools/bundled/phenotype_association/senatag.py' 2024-07-03T14:23:07,941 adding 'galaxy/tools/bundled/phenotype_association/sift.xml' 2024-07-03T14:23:07,943 adding 'galaxy/tools/bundled/phenotype_association/sift_variants_wrapper.sh' 2024-07-03T14:23:07,945 adding 'galaxy/tools/bundled/plotting/bar_chart.py' 2024-07-03T14:23:07,946 adding 'galaxy/tools/bundled/plotting/bar_chart.xml' 2024-07-03T14:23:07,947 adding 'galaxy/tools/bundled/plotting/boxplot.xml' 2024-07-03T14:23:07,949 adding 'galaxy/tools/bundled/solid_tools/__init__.py' 2024-07-03T14:23:07,951 adding 'galaxy/tools/bundled/solid_tools/maq_cs_wrapper.py' 2024-07-03T14:23:07,952 adding 'galaxy/tools/bundled/solid_tools/maq_cs_wrapper.xml' 2024-07-03T14:23:07,954 adding 'galaxy/tools/bundled/solid_tools/maq_cs_wrapper_code.py' 2024-07-03T14:23:07,955 adding 'galaxy/tools/bundled/solid_tools/qualsolid_boxplot_graph.sh' 2024-07-03T14:23:07,956 adding 'galaxy/tools/bundled/solid_tools/solid_qual_boxplot.xml' 2024-07-03T14:23:07,958 adding 'galaxy/tools/bundled/solid_tools/solid_qual_stats.py' 2024-07-03T14:23:07,959 adding 'galaxy/tools/bundled/solid_tools/solid_qual_stats.xml' 2024-07-03T14:23:07,961 adding 'galaxy/tools/bundled/sr_assembly/__init__.py' 2024-07-03T14:23:07,963 adding 'galaxy/tools/bundled/sr_assembly/velvetg.xml' 2024-07-03T14:23:07,964 adding 'galaxy/tools/bundled/sr_assembly/velvetg_wrapper.py' 2024-07-03T14:23:07,966 adding 'galaxy/tools/bundled/sr_assembly/velveth.xml' 2024-07-03T14:23:07,967 adding 'galaxy/tools/bundled/sr_assembly/velveth_wrapper.py' 2024-07-03T14:23:07,970 adding 'galaxy/tools/bundled/sr_mapping/PerM.xml' 2024-07-03T14:23:07,971 adding 'galaxy/tools/bundled/sr_mapping/__init__.py' 2024-07-03T14:23:07,973 adding 'galaxy/tools/bundled/sr_mapping/bfast_wrapper.py' 2024-07-03T14:23:07,976 adding 'galaxy/tools/bundled/sr_mapping/bfast_wrapper.xml' 2024-07-03T14:23:07,977 adding 'galaxy/tools/bundled/sr_mapping/fastq_statistics.xml' 2024-07-03T14:23:07,979 adding 'galaxy/tools/bundled/sr_mapping/mosaik.xml' 2024-07-03T14:23:07,980 adding 'galaxy/tools/bundled/sr_mapping/srma_wrapper.py' 2024-07-03T14:23:07,982 adding 'galaxy/tools/bundled/sr_mapping/srma_wrapper.xml' 2024-07-03T14:23:07,984 adding 'galaxy/tools/bundled/stats/__init__.py' 2024-07-03T14:23:07,985 adding 'galaxy/tools/bundled/stats/aggregate_binned_scores_in_intervals.xml' 2024-07-03T14:23:07,987 adding 'galaxy/tools/bundled/stats/aggregate_scores_in_intervals.py' 2024-07-03T14:23:07,989 adding 'galaxy/tools/bundled/stats/filtering.py' 2024-07-03T14:23:07,990 adding 'galaxy/tools/bundled/stats/filtering.xml' 2024-07-03T14:23:07,992 adding 'galaxy/tools/bundled/stats/filtering_1_1_0.xml' 2024-07-03T14:23:07,993 adding 'galaxy/tools/bundled/stats/grouping.py' 2024-07-03T14:23:07,995 adding 'galaxy/tools/bundled/stats/grouping.xml' 2024-07-03T14:23:07,996 adding 'galaxy/tools/bundled/stats/gsummary.py' 2024-07-03T14:23:07,998 adding 'galaxy/tools/bundled/stats/gsummary.xml' 2024-07-03T14:23:07,999 adding 'galaxy/tools/bundled/stats/r_wrapper.sh' 2024-07-03T14:23:08,001 adding 'galaxy/tools/data/__init__.py' 2024-07-03T14:23:08,003 adding 'galaxy/tools/data_manager/__init__.py' 2024-07-03T14:23:08,005 adding 'galaxy/tools/data_manager/manager.py' 2024-07-03T14:23:08,007 adding 'galaxy/tools/error_reports/__init__.py' 2024-07-03T14:23:08,009 adding 'galaxy/tools/error_reports/plugins/__init__.py' 2024-07-03T14:23:08,010 adding 'galaxy/tools/error_reports/plugins/base_git.py' 2024-07-03T14:23:08,011 adding 'galaxy/tools/error_reports/plugins/email.py' 2024-07-03T14:23:08,013 adding 'galaxy/tools/error_reports/plugins/github.py' 2024-07-03T14:23:08,015 adding 'galaxy/tools/error_reports/plugins/gitlab.py' 2024-07-03T14:23:08,016 adding 'galaxy/tools/error_reports/plugins/influxdb.py' 2024-07-03T14:23:08,017 adding 'galaxy/tools/error_reports/plugins/json.py' 2024-07-03T14:23:08,019 adding 'galaxy/tools/error_reports/plugins/sentry.py' 2024-07-03T14:23:08,020 adding 'galaxy/tools/error_reports/plugins/slack.py' 2024-07-03T14:23:08,022 adding 'galaxy/tools/expressions/__init__.py' 2024-07-03T14:23:08,023 adding 'galaxy/tools/expressions/cwlNodeEngine.js' 2024-07-03T14:23:08,024 adding 'galaxy/tools/expressions/evaluation.py' 2024-07-03T14:23:08,025 adding 'galaxy/tools/expressions/script.py' 2024-07-03T14:23:08,027 adding 'galaxy/tools/expressions/util.py' 2024-07-03T14:23:08,028 adding 'galaxy/tools/filters/__init__.py' 2024-07-03T14:23:08,030 adding 'galaxy/tools/imp_exp/__init__.py' 2024-07-03T14:23:08,031 adding 'galaxy/tools/imp_exp/exp_history_to_archive.xml' 2024-07-03T14:23:08,033 adding 'galaxy/tools/imp_exp/exp_history_to_uri.xml' 2024-07-03T14:23:08,034 adding 'galaxy/tools/imp_exp/export_history.py' 2024-07-03T14:23:08,035 adding 'galaxy/tools/imp_exp/imp_history_from_archive.xml' 2024-07-03T14:23:08,037 adding 'galaxy/tools/imp_exp/unpack_tar_gz_archive.py' 2024-07-03T14:23:08,041 adding 'galaxy/tools/parameters/__init__.py' 2024-07-03T14:23:08,053 adding 'galaxy/tools/parameters/basic.py' 2024-07-03T14:23:08,055 adding 'galaxy/tools/parameters/cancelable_request.py' 2024-07-03T14:23:08,057 adding 'galaxy/tools/parameters/dataset_matcher.py' 2024-07-03T14:23:08,062 adding 'galaxy/tools/parameters/dynamic_options.py' 2024-07-03T14:23:08,066 adding 'galaxy/tools/parameters/grouping.py' 2024-07-03T14:23:08,067 adding 'galaxy/tools/parameters/history_query.py' 2024-07-03T14:23:08,069 adding 'galaxy/tools/parameters/input_translation.py' 2024-07-03T14:23:08,071 adding 'galaxy/tools/parameters/meta.py' 2024-07-03T14:23:08,072 adding 'galaxy/tools/parameters/sanitize.py' 2024-07-03T14:23:08,075 adding 'galaxy/tools/parameters/validation.py' 2024-07-03T14:23:08,076 adding 'galaxy/tools/parameters/workflow_utils.py' 2024-07-03T14:23:08,078 adding 'galaxy/tools/parameters/wrapped.py' 2024-07-03T14:23:08,079 adding 'galaxy/tools/parameters/wrapped_json.py' 2024-07-03T14:23:08,082 adding 'galaxy/tools/search/__init__.py' 2024-07-03T14:23:08,083 adding 'galaxy/tools/util/__init__.py' 2024-07-03T14:23:08,087 adding 'galaxy/tools/util/maf_utilities.py' 2024-07-03T14:23:08,089 adding 'galaxy/tools/util/galaxyops/__init__.py' 2024-07-03T14:23:08,091 adding 'galaxy/visualization/__init__.py' 2024-07-03T14:23:08,093 adding 'galaxy/visualization/genomes.py' 2024-07-03T14:23:08,094 adding 'galaxy/visualization/data_providers/__init__.py' 2024-07-03T14:23:08,096 adding 'galaxy/visualization/data_providers/basic.py' 2024-07-03T14:23:08,097 adding 'galaxy/visualization/data_providers/cigar.py' 2024-07-03T14:23:08,104 adding 'galaxy/visualization/data_providers/genome.py' 2024-07-03T14:23:08,106 adding 'galaxy/visualization/data_providers/registry.py' 2024-07-03T14:23:08,108 adding 'galaxy/visualization/data_providers/phyloviz/__init__.py' 2024-07-03T14:23:08,109 adding 'galaxy/visualization/data_providers/phyloviz/baseparser.py' 2024-07-03T14:23:08,111 adding 'galaxy/visualization/data_providers/phyloviz/newickparser.py' 2024-07-03T14:23:08,112 adding 'galaxy/visualization/data_providers/phyloviz/nexusparser.py' 2024-07-03T14:23:08,114 adding 'galaxy/visualization/data_providers/phyloviz/phyloxmlparser.py' 2024-07-03T14:23:08,115 adding 'galaxy/visualization/genome/__init__.py' 2024-07-03T14:23:08,117 adding 'galaxy/visualization/plugins/__init__.py' 2024-07-03T14:23:08,120 adding 'galaxy/visualization/plugins/config_parser.py' 2024-07-03T14:23:08,122 adding 'galaxy/visualization/plugins/plugin.py' 2024-07-03T14:23:08,124 adding 'galaxy/visualization/plugins/registry.py' 2024-07-03T14:23:08,126 adding 'galaxy/visualization/plugins/resource_parser.py' 2024-07-03T14:23:08,127 adding 'galaxy/visualization/plugins/utils.py' 2024-07-03T14:23:08,129 adding 'galaxy/visualization/tracks/__init__.py' 2024-07-03T14:23:08,130 adding 'galaxy/webhooks/__init__.py' 2024-07-03T14:23:08,132 adding 'galaxy/work/__init__.py' 2024-07-03T14:23:08,133 adding 'galaxy/work/context.py' 2024-07-03T14:23:08,135 adding 'galaxy/workflow/__init__.py' 2024-07-03T14:23:08,138 adding 'galaxy/workflow/extract.py' 2024-07-03T14:23:08,151 adding 'galaxy/workflow/modules.py' 2024-07-03T14:23:08,153 adding 'galaxy/workflow/render.py' 2024-07-03T14:23:08,157 adding 'galaxy/workflow/run.py' 2024-07-03T14:23:08,161 adding 'galaxy/workflow/run_request.py' 2024-07-03T14:23:08,163 adding 'galaxy/workflow/scheduling_manager.py' 2024-07-03T14:23:08,165 adding 'galaxy/workflow/steps.py' 2024-07-03T14:23:08,166 adding 'galaxy/workflow/trs_proxy.py' 2024-07-03T14:23:08,168 adding 'galaxy/workflow/refactor/__init__.py' 2024-07-03T14:23:08,171 adding 'galaxy/workflow/refactor/execute.py' 2024-07-03T14:23:08,173 adding 'galaxy/workflow/refactor/schema.py' 2024-07-03T14:23:08,175 adding 'galaxy/workflow/reports/__init__.py' 2024-07-03T14:23:08,177 adding 'galaxy/workflow/reports/generators/__init__.py' 2024-07-03T14:23:08,178 adding 'galaxy/workflow/reports/generators/markdown.py' 2024-07-03T14:23:08,180 adding 'galaxy/workflow/resources/__init__.py' 2024-07-03T14:23:08,181 adding 'galaxy/workflow/resources/example.py.sample' 2024-07-03T14:23:08,183 adding 'galaxy/workflow/schedulers/__init__.py' 2024-07-03T14:23:08,184 adding 'galaxy/workflow/schedulers/core.py' 2024-07-03T14:23:08,187 adding 'galaxy_ext/__init__.py' 2024-07-03T14:23:08,188 adding 'galaxy_ext/py.typed' 2024-07-03T14:23:08,189 adding 'galaxy_ext/container_monitor/__init__.py' 2024-07-03T14:23:08,190 adding 'galaxy_ext/container_monitor/monitor.py' 2024-07-03T14:23:08,192 adding 'galaxy_ext/expressions/__init__.py' 2024-07-03T14:23:08,193 adding 'galaxy_ext/expressions/handle_job.py' 2024-07-03T14:23:08,194 adding 'galaxy_ext/metadata/__init__.py' 2024-07-03T14:23:08,195 adding 'galaxy_ext/metadata/set_metadata.py' 2024-07-03T14:23:08,197 adding 'tool_shed_client/__init__.py' 2024-07-03T14:23:08,198 adding 'tool_shed_client/py.typed' 2024-07-03T14:23:08,199 adding 'tool_shed_client/trs_util.py' 2024-07-03T14:23:08,201 adding 'tool_shed_client/schema/__init__.py' 2024-07-03T14:23:08,203 adding 'tool_shed_client/schema/trs.py' 2024-07-03T14:23:08,204 adding 'tool_shed_client/schema/trs_service_info.py' 2024-07-03T14:23:08,206 adding 'galaxy_app-24.1.1.dist-info/LICENSE' 2024-07-03T14:23:08,213 adding 'galaxy_app-24.1.1.dist-info/METADATA' 2024-07-03T14:23:08,214 adding 'galaxy_app-24.1.1.dist-info/WHEEL' 2024-07-03T14:23:08,215 adding 'galaxy_app-24.1.1.dist-info/entry_points.txt' 2024-07-03T14:23:08,216 adding 'galaxy_app-24.1.1.dist-info/top_level.txt' 2024-07-03T14:23:08,226 adding 'galaxy_app-24.1.1.dist-info/RECORD' 2024-07-03T14:23:08,251 removing build/bdist.linux-armv7l/wheel 2024-07-03T14:23:08,489 Building wheel for galaxy-app (pyproject.toml): finished with status 'done' 2024-07-03T14:23:08,526 Created wheel for galaxy-app: filename=galaxy_app-24.1.1-py3-none-any.whl size=1485285 sha256=be8d7134be48e860df0cb0dbe29dc847a0845af168831211d5c387c5b4439a0e 2024-07-03T14:23:08,527 Stored in directory: /tmp/pip-ephem-wheel-cache-j2zk0d4s/wheels/a7/57/5d/8d4074409438848f6df80bbc47ac0f9a8d05afc01b75a7872f 2024-07-03T14:23:08,569 Successfully built galaxy-app 2024-07-03T14:23:08,609 Removed build tracker: '/tmp/pip-build-tracker-ooglc3gy'