2024-07-05T23:33:05,892 Created temporary directory: /tmp/pip-build-tracker-9l2i70rh 2024-07-05T23:33:05,893 Initialized build tracking at /tmp/pip-build-tracker-9l2i70rh 2024-07-05T23:33:05,893 Created build tracker: /tmp/pip-build-tracker-9l2i70rh 2024-07-05T23:33:05,894 Entered build tracker: /tmp/pip-build-tracker-9l2i70rh 2024-07-05T23:33:05,894 Created temporary directory: /tmp/pip-wheel-eh_rw8dg 2024-07-05T23:33:05,898 Created temporary directory: /tmp/pip-ephem-wheel-cache-keam1xs3 2024-07-05T23:33:05,919 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2024-07-05T23:33:05,923 2 location(s) to search for versions of tangermeme: 2024-07-05T23:33:05,923 * https://pypi.org/simple/tangermeme/ 2024-07-05T23:33:05,923 * https://www.piwheels.org/simple/tangermeme/ 2024-07-05T23:33:05,924 Fetching project page and analyzing links: https://pypi.org/simple/tangermeme/ 2024-07-05T23:33:05,924 Getting page https://pypi.org/simple/tangermeme/ 2024-07-05T23:33:05,926 Found index url https://pypi.org/simple/ 2024-07-05T23:33:06,140 Fetched page https://pypi.org/simple/tangermeme/ as application/vnd.pypi.simple.v1+json 2024-07-05T23:33:06,144 Skipping link: No binaries permitted for tangermeme: https://files.pythonhosted.org/packages/a9/e0/853e8caeb0d5f4b8fc911ef2757748fff62b26f2ca856819f98d89fd6b5d/tangermeme-0.0.1-py3-none-any.whl (from https://pypi.org/simple/tangermeme/) 2024-07-05T23:33:06,144 Found link https://files.pythonhosted.org/packages/61/41/c9434c381d7fea99951710f47cc3751dcb10002c90cfaf60d3187b7e6665/tangermeme-0.0.1.tar.gz (from https://pypi.org/simple/tangermeme/), version: 0.0.1 2024-07-05T23:33:06,145 Skipping link: No binaries permitted for tangermeme: https://files.pythonhosted.org/packages/8f/21/8567311fe56325b390a914dc5d41efd9646e2277857d10c50338c740a7ce/tangermeme-0.1.0rc0-py3-none-any.whl (from https://pypi.org/simple/tangermeme/) 2024-07-05T23:33:06,146 Found link https://files.pythonhosted.org/packages/05/7a/373121f7e2cdb51984d1c0c24ea4ed2d9328846e863ad517ed07ead9a88f/tangermeme-0.1.0rc0.tar.gz (from https://pypi.org/simple/tangermeme/), version: 0.1.0rc0 2024-07-05T23:33:06,146 Skipping link: No binaries permitted for tangermeme: https://files.pythonhosted.org/packages/7f/5a/9a9b74932c857fce18dfdeea136beccd406a29bd7d8c4b31ed26db4cde32/tangermeme-0.1.0-py3-none-any.whl (from https://pypi.org/simple/tangermeme/) 2024-07-05T23:33:06,147 Found link https://files.pythonhosted.org/packages/9f/f1/5253f9a39e1835bd6dc7ef5adc3c32cbb825b3ef47b84edc8caeee500edb/tangermeme-0.1.0.tar.gz (from https://pypi.org/simple/tangermeme/), version: 0.1.0 2024-07-05T23:33:06,148 Skipping link: No binaries permitted for tangermeme: https://files.pythonhosted.org/packages/85/98/8b03de434fb8d1de09875fb9c4e49b67f54d4f819b1932af6e81c50ff58d/tangermeme-0.2.0-py3-none-any.whl (from https://pypi.org/simple/tangermeme/) 2024-07-05T23:33:06,148 Found link https://files.pythonhosted.org/packages/4e/7c/b5b0c87ab75d6da3a0f64868a528224386672c478a251ee755d9aa5ea092/tangermeme-0.2.0.tar.gz (from https://pypi.org/simple/tangermeme/), version: 0.2.0 2024-07-05T23:33:06,149 Skipping link: No binaries permitted for tangermeme: https://files.pythonhosted.org/packages/c8/f2/683780a3928ca9487fad8436ff74414a1487a6a59c201e8a5860868613c8/tangermeme-0.2.1-py3-none-any.whl (from https://pypi.org/simple/tangermeme/) 2024-07-05T23:33:06,150 Found link https://files.pythonhosted.org/packages/9a/f2/6f5dcd6b0e445e3a4e6959ba63a9dcbfa6721d0b04ef22d1852ff07635c5/tangermeme-0.2.1.tar.gz (from https://pypi.org/simple/tangermeme/), version: 0.2.1 2024-07-05T23:33:06,150 Skipping link: No binaries permitted for tangermeme: https://files.pythonhosted.org/packages/af/06/280770a1f6b00b590a29ff0f04da3182000f5b9ab782508b49156ba1beeb/tangermeme-0.2.2-py3-none-any.whl (from https://pypi.org/simple/tangermeme/) 2024-07-05T23:33:06,151 Found link https://files.pythonhosted.org/packages/77/5b/0ef17f29406af541b3244ff6fd3c1da629b141236b3a73877f7b30de429c/tangermeme-0.2.2.tar.gz (from https://pypi.org/simple/tangermeme/), version: 0.2.2 2024-07-05T23:33:06,152 Skipping link: No binaries permitted for tangermeme: https://files.pythonhosted.org/packages/6a/df/da3fcc7597bb035b223751c8f4163745a33640f1e5e85e8192cecacfe07c/tangermeme-0.2.3-py3-none-any.whl (from https://pypi.org/simple/tangermeme/) 2024-07-05T23:33:06,153 Found link https://files.pythonhosted.org/packages/d2/59/ddc1c3bafc12f487033dc139072ecba655f377e04358d2645af3b1f66de6/tangermeme-0.2.3.tar.gz (from https://pypi.org/simple/tangermeme/), version: 0.2.3 2024-07-05T23:33:06,153 Fetching project page and analyzing links: https://www.piwheels.org/simple/tangermeme/ 2024-07-05T23:33:06,154 Getting page https://www.piwheels.org/simple/tangermeme/ 2024-07-05T23:33:06,155 Found index url https://www.piwheels.org/simple/ 2024-07-05T23:33:06,317 Fetched page https://www.piwheels.org/simple/tangermeme/ as text/html 2024-07-05T23:33:06,320 Skipping link: No binaries permitted for tangermeme: https://www.piwheels.org/simple/tangermeme/tangermeme-0.2.1-py3-none-any.whl#sha256=8296bc7ed6b7c99718b5acbe75e77f99da98d3e680adef43875abdac677bb38c (from https://www.piwheels.org/simple/tangermeme/) 2024-07-05T23:33:06,320 Skipping link: No binaries permitted for tangermeme: https://www.piwheels.org/simple/tangermeme/tangermeme-0.2.0-py3-none-any.whl#sha256=cb8019a48b97b8ce5e24371e7413c6c6bfe3ee1f3f114bd0b40b3fbcbf35f945 (from https://www.piwheels.org/simple/tangermeme/) 2024-07-05T23:33:06,321 Skipping link: No binaries permitted for tangermeme: https://www.piwheels.org/simple/tangermeme/tangermeme-0.1.0-py3-none-any.whl#sha256=6c23d1bf94f5b24ed50311d61ddb1e4c49b9ba9d5e9bb8a22c4679df9711b983 (from https://www.piwheels.org/simple/tangermeme/) 2024-07-05T23:33:06,321 Skipping link: No binaries permitted for tangermeme: https://www.piwheels.org/simple/tangermeme/tangermeme-0.1.0rc0-py3-none-any.whl#sha256=e6dad2c5e1551460aff817aa6a1fd7d8b62976244d57b6219301623bb3b0f7bb (from https://www.piwheels.org/simple/tangermeme/) 2024-07-05T23:33:06,322 Skipping link: No binaries permitted for tangermeme: https://www.piwheels.org/simple/tangermeme/tangermeme-0.0.1-py3-none-any.whl#sha256=623e295dad1d60f7e2d1b6a311127178008994cb6b727cfc2fb7c7bf2511c18b (from https://www.piwheels.org/simple/tangermeme/) 2024-07-05T23:33:06,322 Skipping link: not a file: https://www.piwheels.org/simple/tangermeme/ 2024-07-05T23:33:06,323 Skipping link: not a file: https://pypi.org/simple/tangermeme/ 2024-07-05T23:33:06,344 Given no hashes to check 1 links for project 'tangermeme': discarding no candidates 2024-07-05T23:33:06,363 Collecting tangermeme==0.2.2 2024-07-05T23:33:06,366 Created temporary directory: /tmp/pip-unpack-_scpywy_ 2024-07-05T23:33:06,572 Downloading tangermeme-0.2.2.tar.gz (88 kB) 2024-07-05T23:33:06,722 Added tangermeme==0.2.2 from https://files.pythonhosted.org/packages/77/5b/0ef17f29406af541b3244ff6fd3c1da629b141236b3a73877f7b30de429c/tangermeme-0.2.2.tar.gz to build tracker '/tmp/pip-build-tracker-9l2i70rh' 2024-07-05T23:33:06,724 Running setup.py (path:/tmp/pip-wheel-eh_rw8dg/tangermeme_dd34d7cbb6ec4deb8dbba102e0333473/setup.py) egg_info for package tangermeme 2024-07-05T23:33:06,725 Created temporary directory: /tmp/pip-pip-egg-info-5upj5y4n 2024-07-05T23:33:06,726 Preparing metadata (setup.py): started 2024-07-05T23:33:06,727 Running command python setup.py egg_info 2024-07-05T23:33:07,815 running egg_info 2024-07-05T23:33:07,816 creating /tmp/pip-pip-egg-info-5upj5y4n/tangermeme.egg-info 2024-07-05T23:33:07,842 writing /tmp/pip-pip-egg-info-5upj5y4n/tangermeme.egg-info/PKG-INFO 2024-07-05T23:33:07,845 writing dependency_links to /tmp/pip-pip-egg-info-5upj5y4n/tangermeme.egg-info/dependency_links.txt 2024-07-05T23:33:07,848 writing requirements to /tmp/pip-pip-egg-info-5upj5y4n/tangermeme.egg-info/requires.txt 2024-07-05T23:33:07,849 writing top-level names to /tmp/pip-pip-egg-info-5upj5y4n/tangermeme.egg-info/top_level.txt 2024-07-05T23:33:07,850 writing manifest file '/tmp/pip-pip-egg-info-5upj5y4n/tangermeme.egg-info/SOURCES.txt' 2024-07-05T23:33:07,936 reading manifest file '/tmp/pip-pip-egg-info-5upj5y4n/tangermeme.egg-info/SOURCES.txt' 2024-07-05T23:33:07,938 adding license file 'LICENSE' 2024-07-05T23:33:07,940 writing manifest file '/tmp/pip-pip-egg-info-5upj5y4n/tangermeme.egg-info/SOURCES.txt' 2024-07-05T23:33:08,059 Preparing metadata (setup.py): finished with status 'done' 2024-07-05T23:33:08,063 Source in /tmp/pip-wheel-eh_rw8dg/tangermeme_dd34d7cbb6ec4deb8dbba102e0333473 has version 0.2.2, which satisfies requirement tangermeme==0.2.2 from https://files.pythonhosted.org/packages/77/5b/0ef17f29406af541b3244ff6fd3c1da629b141236b3a73877f7b30de429c/tangermeme-0.2.2.tar.gz 2024-07-05T23:33:08,064 Removed tangermeme==0.2.2 from https://files.pythonhosted.org/packages/77/5b/0ef17f29406af541b3244ff6fd3c1da629b141236b3a73877f7b30de429c/tangermeme-0.2.2.tar.gz from build tracker '/tmp/pip-build-tracker-9l2i70rh' 2024-07-05T23:33:08,068 Created temporary directory: /tmp/pip-unpack-vzcn1chw 2024-07-05T23:33:08,069 Created temporary directory: /tmp/pip-unpack-p7cfj25a 2024-07-05T23:33:08,084 Building wheels for collected packages: tangermeme 2024-07-05T23:33:08,088 Created temporary directory: /tmp/pip-wheel-oukvbv2o 2024-07-05T23:33:08,088 Building wheel for tangermeme (setup.py): started 2024-07-05T23:33:08,089 Destination directory: /tmp/pip-wheel-oukvbv2o 2024-07-05T23:33:08,090 Running command python setup.py bdist_wheel 2024-07-05T23:33:09,165 running bdist_wheel 2024-07-05T23:33:09,261 running build 2024-07-05T23:33:09,262 running build_py 2024-07-05T23:33:09,290 creating build 2024-07-05T23:33:09,290 creating build/lib 2024-07-05T23:33:09,291 creating build/lib/tangermeme 2024-07-05T23:33:09,293 copying tangermeme/variant_effect.py -> build/lib/tangermeme 2024-07-05T23:33:09,295 copying tangermeme/seqlet.py -> build/lib/tangermeme 2024-07-05T23:33:09,297 copying tangermeme/marginalize.py -> build/lib/tangermeme 2024-07-05T23:33:09,299 copying tangermeme/predict.py -> build/lib/tangermeme 2024-07-05T23:33:09,301 copying tangermeme/product.py -> build/lib/tangermeme 2024-07-05T23:33:09,303 copying tangermeme/ism.py -> build/lib/tangermeme 2024-07-05T23:33:09,305 copying tangermeme/kmers.py -> build/lib/tangermeme 2024-07-05T23:33:09,307 copying tangermeme/ablate.py -> build/lib/tangermeme 2024-07-05T23:33:09,309 copying tangermeme/utils.py -> build/lib/tangermeme 2024-07-05T23:33:09,312 copying tangermeme/space.py -> build/lib/tangermeme 2024-07-05T23:33:09,314 copying tangermeme/deep_lift_shap.py -> build/lib/tangermeme 2024-07-05T23:33:09,316 copying tangermeme/__init__.py -> build/lib/tangermeme 2024-07-05T23:33:09,318 copying tangermeme/ersatz.py -> build/lib/tangermeme 2024-07-05T23:33:09,320 copying tangermeme/match.py -> build/lib/tangermeme 2024-07-05T23:33:09,322 copying tangermeme/design.py -> build/lib/tangermeme 2024-07-05T23:33:09,324 copying tangermeme/plot.py -> build/lib/tangermeme 2024-07-05T23:33:09,326 copying tangermeme/io.py -> build/lib/tangermeme 2024-07-05T23:33:09,329 creating build/lib/tangermeme/tools 2024-07-05T23:33:09,330 copying tangermeme/tools/fimo.py -> build/lib/tangermeme/tools 2024-07-05T23:33:09,332 copying tangermeme/tools/__init__.py -> build/lib/tangermeme/tools 2024-07-05T23:33:09,334 copying tangermeme/tools/tomtom.py -> build/lib/tangermeme/tools 2024-07-05T23:33:09,364 /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. 2024-07-05T23:33:09,365 !! 2024-07-05T23:33:09,366 ******************************************************************************** 2024-07-05T23:33:09,367 Please avoid running ``setup.py`` directly. 2024-07-05T23:33:09,367 Instead, use pypa/build, pypa/installer or other 2024-07-05T23:33:09,368 standards-based tools. 2024-07-05T23:33:09,369 See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. 2024-07-05T23:33:09,370 ******************************************************************************** 2024-07-05T23:33:09,371 !! 2024-07-05T23:33:09,372 self.initialize_options() 2024-07-05T23:33:09,390 installing to build/bdist.linux-armv7l/wheel 2024-07-05T23:33:09,391 running install 2024-07-05T23:33:09,416 running install_lib 2024-07-05T23:33:09,441 creating build/bdist.linux-armv7l 2024-07-05T23:33:09,441 creating build/bdist.linux-armv7l/wheel 2024-07-05T23:33:09,443 creating build/bdist.linux-armv7l/wheel/tangermeme 2024-07-05T23:33:09,444 copying build/lib/tangermeme/variant_effect.py -> build/bdist.linux-armv7l/wheel/tangermeme 2024-07-05T23:33:09,446 copying build/lib/tangermeme/seqlet.py -> build/bdist.linux-armv7l/wheel/tangermeme 2024-07-05T23:33:09,449 copying build/lib/tangermeme/marginalize.py -> build/bdist.linux-armv7l/wheel/tangermeme 2024-07-05T23:33:09,451 copying build/lib/tangermeme/predict.py -> build/bdist.linux-armv7l/wheel/tangermeme 2024-07-05T23:33:09,453 copying build/lib/tangermeme/product.py -> build/bdist.linux-armv7l/wheel/tangermeme 2024-07-05T23:33:09,455 copying build/lib/tangermeme/ism.py -> build/bdist.linux-armv7l/wheel/tangermeme 2024-07-05T23:33:09,457 copying build/lib/tangermeme/kmers.py -> build/bdist.linux-armv7l/wheel/tangermeme 2024-07-05T23:33:09,459 copying build/lib/tangermeme/ablate.py -> build/bdist.linux-armv7l/wheel/tangermeme 2024-07-05T23:33:09,461 copying build/lib/tangermeme/utils.py -> build/bdist.linux-armv7l/wheel/tangermeme 2024-07-05T23:33:09,463 copying build/lib/tangermeme/space.py -> build/bdist.linux-armv7l/wheel/tangermeme 2024-07-05T23:33:09,465 copying build/lib/tangermeme/deep_lift_shap.py -> build/bdist.linux-armv7l/wheel/tangermeme 2024-07-05T23:33:09,468 creating build/bdist.linux-armv7l/wheel/tangermeme/tools 2024-07-05T23:33:09,469 copying build/lib/tangermeme/tools/fimo.py -> build/bdist.linux-armv7l/wheel/tangermeme/tools 2024-07-05T23:33:09,471 copying build/lib/tangermeme/tools/__init__.py -> build/bdist.linux-armv7l/wheel/tangermeme/tools 2024-07-05T23:33:09,473 copying build/lib/tangermeme/tools/tomtom.py -> build/bdist.linux-armv7l/wheel/tangermeme/tools 2024-07-05T23:33:09,475 copying build/lib/tangermeme/__init__.py -> build/bdist.linux-armv7l/wheel/tangermeme 2024-07-05T23:33:09,477 copying build/lib/tangermeme/ersatz.py -> build/bdist.linux-armv7l/wheel/tangermeme 2024-07-05T23:33:09,479 copying build/lib/tangermeme/match.py -> build/bdist.linux-armv7l/wheel/tangermeme 2024-07-05T23:33:09,482 copying build/lib/tangermeme/design.py -> build/bdist.linux-armv7l/wheel/tangermeme 2024-07-05T23:33:09,484 copying build/lib/tangermeme/plot.py -> build/bdist.linux-armv7l/wheel/tangermeme 2024-07-05T23:33:09,486 copying build/lib/tangermeme/io.py -> build/bdist.linux-armv7l/wheel/tangermeme 2024-07-05T23:33:09,488 running install_egg_info 2024-07-05T23:33:09,552 running egg_info 2024-07-05T23:33:09,576 writing tangermeme.egg-info/PKG-INFO 2024-07-05T23:33:09,579 writing dependency_links to tangermeme.egg-info/dependency_links.txt 2024-07-05T23:33:09,581 writing requirements to tangermeme.egg-info/requires.txt 2024-07-05T23:33:09,582 writing top-level names to tangermeme.egg-info/top_level.txt 2024-07-05T23:33:09,611 reading manifest file 'tangermeme.egg-info/SOURCES.txt' 2024-07-05T23:33:09,614 adding license file 'LICENSE' 2024-07-05T23:33:09,617 writing manifest file 'tangermeme.egg-info/SOURCES.txt' 2024-07-05T23:33:09,618 Copying tangermeme.egg-info to build/bdist.linux-armv7l/wheel/tangermeme-0.2.2-py3.11.egg-info 2024-07-05T23:33:09,627 running install_scripts 2024-07-05T23:33:09,641 creating build/bdist.linux-armv7l/wheel/tangermeme-0.2.2.dist-info/WHEEL 2024-07-05T23:33:09,644 creating '/tmp/pip-wheel-oukvbv2o/tangermeme-0.2.2-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2024-07-05T23:33:09,646 adding 'tangermeme/__init__.py' 2024-07-05T23:33:09,648 adding 'tangermeme/ablate.py' 2024-07-05T23:33:09,651 adding 'tangermeme/deep_lift_shap.py' 2024-07-05T23:33:09,652 adding 'tangermeme/design.py' 2024-07-05T23:33:09,655 adding 'tangermeme/ersatz.py' 2024-07-05T23:33:09,658 adding 'tangermeme/io.py' 2024-07-05T23:33:09,660 adding 'tangermeme/ism.py' 2024-07-05T23:33:09,662 adding 'tangermeme/kmers.py' 2024-07-05T23:33:09,663 adding 'tangermeme/marginalize.py' 2024-07-05T23:33:09,665 adding 'tangermeme/match.py' 2024-07-05T23:33:09,667 adding 'tangermeme/plot.py' 2024-07-05T23:33:09,668 adding 'tangermeme/predict.py' 2024-07-05T23:33:09,670 adding 'tangermeme/product.py' 2024-07-05T23:33:09,672 adding 'tangermeme/seqlet.py' 2024-07-05T23:33:09,673 adding 'tangermeme/space.py' 2024-07-05T23:33:09,675 adding 'tangermeme/utils.py' 2024-07-05T23:33:09,677 adding 'tangermeme/variant_effect.py' 2024-07-05T23:33:09,679 adding 'tangermeme/tools/__init__.py' 2024-07-05T23:33:09,681 adding 'tangermeme/tools/fimo.py' 2024-07-05T23:33:09,682 adding 'tangermeme/tools/tomtom.py' 2024-07-05T23:33:09,684 adding 'tangermeme-0.2.2.dist-info/LICENSE' 2024-07-05T23:33:09,686 adding 'tangermeme-0.2.2.dist-info/METADATA' 2024-07-05T23:33:09,687 adding 'tangermeme-0.2.2.dist-info/WHEEL' 2024-07-05T23:33:09,687 adding 'tangermeme-0.2.2.dist-info/top_level.txt' 2024-07-05T23:33:09,688 adding 'tangermeme-0.2.2.dist-info/RECORD' 2024-07-05T23:33:09,690 removing build/bdist.linux-armv7l/wheel 2024-07-05T23:33:09,818 Building wheel for tangermeme (setup.py): finished with status 'done' 2024-07-05T23:33:09,822 Created wheel for tangermeme: filename=tangermeme-0.2.2-py3-none-any.whl size=60273 sha256=62245ba52a39abcced1837421f893c8ce0a0e41b6184b600c713f6d7f51e6cb1 2024-07-05T23:33:09,823 Stored in directory: /tmp/pip-ephem-wheel-cache-keam1xs3/wheels/4f/4a/85/8da98edc7c051308ea9b2424926cedd68c13ffaf32e26e2e6c 2024-07-05T23:33:09,833 Successfully built tangermeme 2024-07-05T23:33:09,838 Removed build tracker: '/tmp/pip-build-tracker-9l2i70rh'