2024-07-08T11:53:09,232 Created temporary directory: /tmp/pip-build-tracker-z5skz1xl
2024-07-08T11:53:09,233 Initialized build tracking at /tmp/pip-build-tracker-z5skz1xl
2024-07-08T11:53:09,233 Created build tracker: /tmp/pip-build-tracker-z5skz1xl
2024-07-08T11:53:09,234 Entered build tracker: /tmp/pip-build-tracker-z5skz1xl
2024-07-08T11:53:09,235 Created temporary directory: /tmp/pip-wheel-u2a555sj
2024-07-08T11:53:09,238 Created temporary directory: /tmp/pip-ephem-wheel-cache-wrw_tmx5
2024-07-08T11:53:09,261 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2024-07-08T11:53:09,264 2 location(s) to search for versions of crispector2:
2024-07-08T11:53:09,264 * https://pypi.org/simple/crispector2/
2024-07-08T11:53:09,264 * https://www.piwheels.org/simple/crispector2/
2024-07-08T11:53:09,265 Fetching project page and analyzing links: https://pypi.org/simple/crispector2/
2024-07-08T11:53:09,266 Getting page https://pypi.org/simple/crispector2/
2024-07-08T11:53:09,267 Found index url https://pypi.org/simple/
2024-07-08T11:53:09,482 Fetched page https://pypi.org/simple/crispector2/ as application/vnd.pypi.simple.v1+json
2024-07-08T11:53:09,485   Skipping link: No binaries permitted for crispector2: https://files.pythonhosted.org/packages/bb/5a/50eaff3c829e6d5acc61fee35051c0b9f837b947f831b80eebd47f50ceda/crispector2-2.0.7-py2.py3-none-any.whl (from https://pypi.org/simple/crispector2/) (requires-python:>=3.7)
2024-07-08T11:53:09,486   Found link https://files.pythonhosted.org/packages/db/06/4973e211590ec29330f4209fe4db7e2ebe9261d3df3cb9672741338e61db/crispector2-2.0.7.tar.gz (from https://pypi.org/simple/crispector2/) (requires-python:>=3.7), version: 2.0.7
2024-07-08T11:53:09,487   Skipping link: No binaries permitted for crispector2: https://files.pythonhosted.org/packages/46/d1/0f612c417fb2d66d948300a517d1686d085e6a4a18db3948a230b3d55e7e/crispector2-2.0.8-py2.py3-none-any.whl (from https://pypi.org/simple/crispector2/) (requires-python:>=3.7)
2024-07-08T11:53:09,488   Found link https://files.pythonhosted.org/packages/6d/79/3a27ec43b377e9665b18c78951f8902c640e4046bdbe8e255f06b0e9da7b/crispector2-2.0.8.tar.gz (from https://pypi.org/simple/crispector2/) (requires-python:>=3.7), version: 2.0.8
2024-07-08T11:53:09,488   Skipping link: No binaries permitted for crispector2: https://files.pythonhosted.org/packages/d6/63/e57b6b7e2feb9abafbb3362686242f1e13f1329ab2470c312b34b854a32c/crispector2-2.0.9-py3-none-any.whl (from https://pypi.org/simple/crispector2/)
2024-07-08T11:53:09,489   Found link https://files.pythonhosted.org/packages/1c/bb/c566e70eabd0d85862b55ed7aacd4f27a921b5a07032942487544ab89f08/crispector2-2.0.9.tar.gz (from https://pypi.org/simple/crispector2/), version: 2.0.9
2024-07-08T11:53:09,490   Skipping link: No binaries permitted for crispector2: https://files.pythonhosted.org/packages/86/f0/d2ef53cfc071f00e4fbbe8a60037496432a782c675ec0f56f86202690597/crispector2-2.1.1-py3-none-any.whl (from https://pypi.org/simple/crispector2/)
2024-07-08T11:53:09,491   Found link https://files.pythonhosted.org/packages/79/7b/4e41052ae11ab3a8761fce7bddfd9c697b80f88a31e5efe36e8bfe4a1e8b/crispector2-2.1.1.tar.gz (from https://pypi.org/simple/crispector2/), version: 2.1.1
2024-07-08T11:53:09,491   Skipping link: No binaries permitted for crispector2: https://files.pythonhosted.org/packages/05/d0/eef68c70327a69843fa07b512efde43b1e9edf4ff389325f4e64e8cc16f5/crispector2-2.1.2-py3-none-any.whl (from https://pypi.org/simple/crispector2/)
2024-07-08T11:53:09,492   Found link https://files.pythonhosted.org/packages/fd/c5/3108d31267038f1c38ecbbf1143956c703c4759cc96f7258526cb2f64d5b/crispector2-2.1.2.tar.gz (from https://pypi.org/simple/crispector2/), version: 2.1.2
2024-07-08T11:53:09,493 Fetching project page and analyzing links: https://www.piwheels.org/simple/crispector2/
2024-07-08T11:53:09,493 Getting page https://www.piwheels.org/simple/crispector2/
2024-07-08T11:53:09,495 Found index url https://www.piwheels.org/simple/
2024-07-08T11:53:09,648 Fetched page https://www.piwheels.org/simple/crispector2/ as text/html
2024-07-08T11:53:09,650   Skipping link: No binaries permitted for crispector2: https://www.piwheels.org/simple/crispector2/crispector2-2.1.1-py3-none-any.whl#sha256=33c1af7cd0af56f5be4a7e66ffa5a62b3c11142283fb2a72524b094e599c9242 (from https://www.piwheels.org/simple/crispector2/)
2024-07-08T11:53:09,651   Skipping link: No binaries permitted for crispector2: https://www.piwheels.org/simple/crispector2/crispector2-2.0.9-py3-none-any.whl#sha256=11f36e2f879276d9b369df6d68f5385bb562192656acf10bc4909e51c9a0620e (from https://www.piwheels.org/simple/crispector2/)
2024-07-08T11:53:09,652   Skipping link: No binaries permitted for crispector2: https://www.piwheels.org/simple/crispector2/crispector2-2.0.8-py2.py3-none-any.whl#sha256=f222d0d4bb178770571ae530e472b4e231beaad1d23086a159edd7dfa54074eb (from https://www.piwheels.org/simple/crispector2/) (requires-python:>=3.7)
2024-07-08T11:53:09,652   Skipping link: No binaries permitted for crispector2: https://www.piwheels.org/simple/crispector2/crispector2-2.0.7-py2.py3-none-any.whl#sha256=6ff640c1b6141b08057f68d1f3c5f51ee814fdd573a7af2c20b2d37d71321f9f (from https://www.piwheels.org/simple/crispector2/) (requires-python:>=3.7)
2024-07-08T11:53:09,653 Skipping link: not a file: https://www.piwheels.org/simple/crispector2/
2024-07-08T11:53:09,653 Skipping link: not a file: https://pypi.org/simple/crispector2/
2024-07-08T11:53:09,673 Given no hashes to check 1 links for project 'crispector2': discarding no candidates
2024-07-08T11:53:09,693 Collecting crispector2==2.1.2
2024-07-08T11:53:09,695   Created temporary directory: /tmp/pip-unpack-gzykbhwb
2024-07-08T11:53:09,906   Downloading crispector2-2.1.2.tar.gz (429 kB)
2024-07-08T11:53:10,134   Added crispector2==2.1.2 from https://files.pythonhosted.org/packages/fd/c5/3108d31267038f1c38ecbbf1143956c703c4759cc96f7258526cb2f64d5b/crispector2-2.1.2.tar.gz to build tracker '/tmp/pip-build-tracker-z5skz1xl'
2024-07-08T11:53:10,138   Created temporary directory: /tmp/pip-build-env-eit3jkfu
2024-07-08T11:53:10,142   Installing build dependencies: started
2024-07-08T11:53:10,144   Running command pip subprocess to install build dependencies
2024-07-08T11:53:11,331   Using pip 24.0 from /usr/local/lib/python3.11/dist-packages/pip (python 3.11)
2024-07-08T11:53:11,845   Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2024-07-08T11:53:13,321   Collecting setuptools
2024-07-08T11:53:13,334     Using cached https://www.piwheels.org/simple/setuptools/setuptools-70.2.0-py3-none-any.whl (930 kB)
2024-07-08T11:53:15,973   Installing collected packages: setuptools
2024-07-08T11:53:18,521   Successfully installed setuptools-70.2.0

2024-07-08T11:53:18,823   [notice] A new release of pip is available: 24.0 -> 24.1.1
2024-07-08T11:53:18,824   [notice] To update, run: python3 -m pip install --upgrade pip
2024-07-08T11:53:19,085   Installing build dependencies: finished with status 'done'
2024-07-08T11:53:19,088   Getting requirements to build wheel: started
2024-07-08T11:53:19,090   Running command Getting requirements to build wheel
2024-07-08T11:53:19,659   /tmp/pip-build-env-eit3jkfu/overlay/local/lib/python3.11/dist-packages/setuptools/config/expand.py:129: SetuptoolsWarning: File '/tmp/pip-wheel-u2a555sj/crispector2_cab5283514234f95ae66426345c21e87/LICENSE.txt' cannot be found
2024-07-08T11:53:19,659     return '\n'.join(
2024-07-08T11:53:19,907   running egg_info
2024-07-08T11:53:19,910   writing crispector2.egg-info/PKG-INFO
2024-07-08T11:53:19,914   writing dependency_links to crispector2.egg-info/dependency_links.txt
2024-07-08T11:53:19,916   writing entry points to crispector2.egg-info/entry_points.txt
2024-07-08T11:53:19,918   writing requirements to crispector2.egg-info/requires.txt
2024-07-08T11:53:19,919   writing top-level names to crispector2.egg-info/top_level.txt
2024-07-08T11:53:19,940   reading manifest file 'crispector2.egg-info/SOURCES.txt'
2024-07-08T11:53:19,943   reading manifest template 'MANIFEST.in'
2024-07-08T11:53:19,945   adding license file 'LICENSE'
2024-07-08T11:53:19,949   writing manifest file 'crispector2.egg-info/SOURCES.txt'
2024-07-08T11:53:20,066   Getting requirements to build wheel: finished with status 'done'
2024-07-08T11:53:20,070   Created temporary directory: /tmp/pip-modern-metadata-go3o63ux
2024-07-08T11:53:20,072   Preparing metadata (pyproject.toml): started
2024-07-08T11:53:20,073   Running command Preparing metadata (pyproject.toml)
2024-07-08T11:53:20,640   /tmp/pip-build-env-eit3jkfu/overlay/local/lib/python3.11/dist-packages/setuptools/config/expand.py:129: SetuptoolsWarning: File '/tmp/pip-wheel-u2a555sj/crispector2_cab5283514234f95ae66426345c21e87/LICENSE.txt' cannot be found
2024-07-08T11:53:20,641     return '\n'.join(
2024-07-08T11:53:20,875   running dist_info
2024-07-08T11:53:20,880   creating /tmp/pip-modern-metadata-go3o63ux/crispector2.egg-info
2024-07-08T11:53:20,883   writing /tmp/pip-modern-metadata-go3o63ux/crispector2.egg-info/PKG-INFO
2024-07-08T11:53:20,887   writing dependency_links to /tmp/pip-modern-metadata-go3o63ux/crispector2.egg-info/dependency_links.txt
2024-07-08T11:53:20,889   writing entry points to /tmp/pip-modern-metadata-go3o63ux/crispector2.egg-info/entry_points.txt
2024-07-08T11:53:20,891   writing requirements to /tmp/pip-modern-metadata-go3o63ux/crispector2.egg-info/requires.txt
2024-07-08T11:53:20,892   writing top-level names to /tmp/pip-modern-metadata-go3o63ux/crispector2.egg-info/top_level.txt
2024-07-08T11:53:20,894   writing manifest file '/tmp/pip-modern-metadata-go3o63ux/crispector2.egg-info/SOURCES.txt'
2024-07-08T11:53:20,913   reading manifest file '/tmp/pip-modern-metadata-go3o63ux/crispector2.egg-info/SOURCES.txt'
2024-07-08T11:53:20,915   reading manifest template 'MANIFEST.in'
2024-07-08T11:53:20,917   adding license file 'LICENSE'
2024-07-08T11:53:20,919   writing manifest file '/tmp/pip-modern-metadata-go3o63ux/crispector2.egg-info/SOURCES.txt'
2024-07-08T11:53:20,921   creating '/tmp/pip-modern-metadata-go3o63ux/crispector2-2.1.2.dist-info'
2024-07-08T11:53:21,074   Preparing metadata (pyproject.toml): finished with status 'done'
2024-07-08T11:53:21,079   Source in /tmp/pip-wheel-u2a555sj/crispector2_cab5283514234f95ae66426345c21e87 has version 2.1.2, which satisfies requirement crispector2==2.1.2 from https://files.pythonhosted.org/packages/fd/c5/3108d31267038f1c38ecbbf1143956c703c4759cc96f7258526cb2f64d5b/crispector2-2.1.2.tar.gz
2024-07-08T11:53:21,080   Removed crispector2==2.1.2 from https://files.pythonhosted.org/packages/fd/c5/3108d31267038f1c38ecbbf1143956c703c4759cc96f7258526cb2f64d5b/crispector2-2.1.2.tar.gz from build tracker '/tmp/pip-build-tracker-z5skz1xl'
2024-07-08T11:53:21,086 Created temporary directory: /tmp/pip-unpack-62fbrgtf
2024-07-08T11:53:21,087 Created temporary directory: /tmp/pip-unpack-ztbwq16j
2024-07-08T11:53:21,107 Building wheels for collected packages: crispector2
2024-07-08T11:53:21,111   Created temporary directory: /tmp/pip-wheel-n36turbs
2024-07-08T11:53:21,111   Destination directory: /tmp/pip-wheel-n36turbs
2024-07-08T11:53:21,113   Building wheel for crispector2 (pyproject.toml): started
2024-07-08T11:53:21,114   Running command Building wheel for crispector2 (pyproject.toml)
2024-07-08T11:53:21,651   /tmp/pip-build-env-eit3jkfu/overlay/local/lib/python3.11/dist-packages/setuptools/config/expand.py:129: SetuptoolsWarning: File '/tmp/pip-wheel-u2a555sj/crispector2_cab5283514234f95ae66426345c21e87/LICENSE.txt' cannot be found
2024-07-08T11:53:21,651     return '\n'.join(
2024-07-08T11:53:21,867   running bdist_wheel
2024-07-08T11:53:21,881   running build
2024-07-08T11:53:21,881   running build_py
2024-07-08T11:53:21,885   creating build
2024-07-08T11:53:21,886   creating build/lib
2024-07-08T11:53:21,886   creating build/lib/crispector2
2024-07-08T11:53:21,887   copying crispector2/crispector_main.py -> build/lib/crispector2
2024-07-08T11:53:21,890   copying crispector2/cli.py -> build/lib/crispector2
2024-07-08T11:53:21,893   copying crispector2/__init__.py -> build/lib/crispector2
2024-07-08T11:53:21,895   creating build/lib/crispector2/report
2024-07-08T11:53:21,896   copying crispector2/report/visualization_and_output.py -> build/lib/crispector2/report
2024-07-08T11:53:21,900   copying crispector2/report/__init__.py -> build/lib/crispector2/report
2024-07-08T11:53:21,902   copying crispector2/report/html_report.py -> build/lib/crispector2/report
2024-07-08T11:53:21,905   creating build/lib/crispector2/utils
2024-07-08T11:53:21,906   copying crispector2/utils/exceptions.py -> build/lib/crispector2/utils
2024-07-08T11:53:21,908   copying crispector2/utils/constants_and_types.py -> build/lib/crispector2/utils
2024-07-08T11:53:21,910   copying crispector2/utils/constants_and_types_old.py -> build/lib/crispector2/utils
2024-07-08T11:53:21,912   copying crispector2/utils/logger.py -> build/lib/crispector2/utils
2024-07-08T11:53:21,913   copying crispector2/utils/__init__.py -> build/lib/crispector2/utils
2024-07-08T11:53:21,915   copying crispector2/utils/configurator.py -> build/lib/crispector2/utils
2024-07-08T11:53:21,917   creating build/lib/crispector2/config
2024-07-08T11:53:21,918   copying crispector2/config/__init__.py -> build/lib/crispector2/config
2024-07-08T11:53:21,920   creating build/lib/crispector2/allele
2024-07-08T11:53:21,921   copying crispector2/allele/allele_tx.py -> build/lib/crispector2/allele
2024-07-08T11:53:21,924   copying crispector2/allele/allele_mock.py -> build/lib/crispector2/allele
2024-07-08T11:53:21,926   copying crispector2/allele/inconsistent_allele_freq.py -> build/lib/crispector2/allele
2024-07-08T11:53:21,928   copying crispector2/allele/random_reads_handler.py -> build/lib/crispector2/allele
2024-07-08T11:53:21,931   copying crispector2/allele/__init__.py -> build/lib/crispector2/allele
2024-07-08T11:53:21,932   copying crispector2/allele/allele_reference_df.py -> build/lib/crispector2/allele
2024-07-08T11:53:21,934   creating build/lib/crispector2/modifications
2024-07-08T11:53:21,935   copying crispector2/modifications/modification_tables.py -> build/lib/crispector2/modifications
2024-07-08T11:53:21,938   copying crispector2/modifications/__init__.py -> build/lib/crispector2/modifications
2024-07-08T11:53:21,939   copying crispector2/modifications/modification_types.py -> build/lib/crispector2/modifications
2024-07-08T11:53:21,942   creating build/lib/crispector2/input_processing
2024-07-08T11:53:21,943   copying crispector2/input_processing/input_processing.py -> build/lib/crispector2/input_processing
2024-07-08T11:53:21,945   copying crispector2/input_processing/alignment.py -> build/lib/crispector2/input_processing
2024-07-08T11:53:21,949   copying crispector2/input_processing/utils.py -> build/lib/crispector2/input_processing
2024-07-08T11:53:21,951   copying crispector2/input_processing/__init__.py -> build/lib/crispector2/input_processing
2024-07-08T11:53:21,953   creating build/lib/crispector2/algorithm
2024-07-08T11:53:21,954   copying crispector2/algorithm/translocations_original.py -> build/lib/crispector2/algorithm
2024-07-08T11:53:21,956   copying crispector2/algorithm/binomial_probability.py -> build/lib/crispector2/algorithm
2024-07-08T11:53:21,958   copying crispector2/algorithm/core_algorithm.py -> build/lib/crispector2/algorithm
2024-07-08T11:53:21,960   copying crispector2/algorithm/translocations.py -> build/lib/crispector2/algorithm
2024-07-08T11:53:21,962   copying crispector2/algorithm/__init__.py -> build/lib/crispector2/algorithm
2024-07-08T11:53:21,964   running egg_info
2024-07-08T11:53:21,967   writing crispector2.egg-info/PKG-INFO
2024-07-08T11:53:21,970   writing dependency_links to crispector2.egg-info/dependency_links.txt
2024-07-08T11:53:21,972   writing entry points to crispector2.egg-info/entry_points.txt
2024-07-08T11:53:21,973   writing requirements to crispector2.egg-info/requires.txt
2024-07-08T11:53:21,974   writing top-level names to crispector2.egg-info/top_level.txt
2024-07-08T11:53:21,987   reading manifest file 'crispector2.egg-info/SOURCES.txt'
2024-07-08T11:53:21,990   reading manifest template 'MANIFEST.in'
2024-07-08T11:53:21,992   adding license file 'LICENSE'
2024-07-08T11:53:21,995   writing manifest file 'crispector2.egg-info/SOURCES.txt'
2024-07-08T11:53:22,001   copying crispector2/config/default_config.yml -> build/lib/crispector2/config
2024-07-08T11:53:22,003   creating build/lib/crispector2/report/html_templates
2024-07-08T11:53:22,004   copying crispector2/report/html_templates/.DS_Store -> build/lib/crispector2/report/html_templates
2024-07-08T11:53:22,006   copying crispector2/report/html_templates/crispector_logo.jpg -> build/lib/crispector2/report/html_templates
2024-07-08T11:53:22,011   copying crispector2/report/html_templates/crispector_logo.png -> build/lib/crispector2/report/html_templates
2024-07-08T11:53:22,017   copying crispector2/report/html_templates/file_to_render.html -> build/lib/crispector2/report/html_templates
2024-07-08T11:53:22,019   copying crispector2/report/html_templates/file_to_render_old.html -> build/lib/crispector2/report/html_templates
2024-07-08T11:53:22,022   copying crispector2/report/html_templates/final_layout.html -> build/lib/crispector2/report/html_templates
2024-07-08T11:53:22,024   copying crispector2/report/html_templates/final_layout_old.html -> build/lib/crispector2/report/html_templates
2024-07-08T11:53:22,027   copying crispector2/report/html_templates/site_file_to_render.html -> build/lib/crispector2/report/html_templates
2024-07-08T11:53:22,029   copying crispector2/report/html_templates/site_layout.html -> build/lib/crispector2/report/html_templates
2024-07-08T11:53:22,040   installing to build/bdist.linux-armv7l/wheel
2024-07-08T11:53:22,041   running install
2024-07-08T11:53:22,065   running install_lib
2024-07-08T11:53:22,068   creating build/bdist.linux-armv7l
2024-07-08T11:53:22,069   creating build/bdist.linux-armv7l/wheel
2024-07-08T11:53:22,070   creating build/bdist.linux-armv7l/wheel/crispector2
2024-07-08T11:53:22,071   creating build/bdist.linux-armv7l/wheel/crispector2/report
2024-07-08T11:53:22,072   copying build/lib/crispector2/report/visualization_and_output.py -> build/bdist.linux-armv7l/wheel/crispector2/report
2024-07-08T11:53:22,076   copying build/lib/crispector2/report/__init__.py -> build/bdist.linux-armv7l/wheel/crispector2/report
2024-07-08T11:53:22,078   creating build/bdist.linux-armv7l/wheel/crispector2/report/html_templates
2024-07-08T11:53:22,078   copying build/lib/crispector2/report/html_templates/file_to_render.html -> build/bdist.linux-armv7l/wheel/crispector2/report/html_templates
2024-07-08T11:53:22,081   copying build/lib/crispector2/report/html_templates/.DS_Store -> build/bdist.linux-armv7l/wheel/crispector2/report/html_templates
2024-07-08T11:53:22,083   copying build/lib/crispector2/report/html_templates/file_to_render_old.html -> build/bdist.linux-armv7l/wheel/crispector2/report/html_templates
2024-07-08T11:53:22,086   copying build/lib/crispector2/report/html_templates/crispector_logo.png -> build/bdist.linux-armv7l/wheel/crispector2/report/html_templates
2024-07-08T11:53:22,090   copying build/lib/crispector2/report/html_templates/final_layout_old.html -> build/bdist.linux-armv7l/wheel/crispector2/report/html_templates
2024-07-08T11:53:22,092   copying build/lib/crispector2/report/html_templates/site_file_to_render.html -> build/bdist.linux-armv7l/wheel/crispector2/report/html_templates
2024-07-08T11:53:22,094   copying build/lib/crispector2/report/html_templates/final_layout.html -> build/bdist.linux-armv7l/wheel/crispector2/report/html_templates
2024-07-08T11:53:22,097   copying build/lib/crispector2/report/html_templates/crispector_logo.jpg -> build/bdist.linux-armv7l/wheel/crispector2/report/html_templates
2024-07-08T11:53:22,101   copying build/lib/crispector2/report/html_templates/site_layout.html -> build/bdist.linux-armv7l/wheel/crispector2/report/html_templates
2024-07-08T11:53:22,103   copying build/lib/crispector2/report/html_report.py -> build/bdist.linux-armv7l/wheel/crispector2/report
2024-07-08T11:53:22,106   creating build/bdist.linux-armv7l/wheel/crispector2/utils
2024-07-08T11:53:22,107   copying build/lib/crispector2/utils/exceptions.py -> build/bdist.linux-armv7l/wheel/crispector2/utils
2024-07-08T11:53:22,109   copying build/lib/crispector2/utils/constants_and_types.py -> build/bdist.linux-armv7l/wheel/crispector2/utils
2024-07-08T11:53:22,111   copying build/lib/crispector2/utils/constants_and_types_old.py -> build/bdist.linux-armv7l/wheel/crispector2/utils
2024-07-08T11:53:22,113   copying build/lib/crispector2/utils/logger.py -> build/bdist.linux-armv7l/wheel/crispector2/utils
2024-07-08T11:53:22,114   copying build/lib/crispector2/utils/__init__.py -> build/bdist.linux-armv7l/wheel/crispector2/utils
2024-07-08T11:53:22,116   copying build/lib/crispector2/utils/configurator.py -> build/bdist.linux-armv7l/wheel/crispector2/utils
2024-07-08T11:53:22,117   creating build/bdist.linux-armv7l/wheel/crispector2/config
2024-07-08T11:53:22,118   copying build/lib/crispector2/config/__init__.py -> build/bdist.linux-armv7l/wheel/crispector2/config
2024-07-08T11:53:22,120   copying build/lib/crispector2/config/default_config.yml -> build/bdist.linux-armv7l/wheel/crispector2/config
2024-07-08T11:53:22,122   creating build/bdist.linux-armv7l/wheel/crispector2/allele
2024-07-08T11:53:22,123   copying build/lib/crispector2/allele/allele_tx.py -> build/bdist.linux-armv7l/wheel/crispector2/allele
2024-07-08T11:53:22,125   copying build/lib/crispector2/allele/allele_mock.py -> build/bdist.linux-armv7l/wheel/crispector2/allele
2024-07-08T11:53:22,128   copying build/lib/crispector2/allele/inconsistent_allele_freq.py -> build/bdist.linux-armv7l/wheel/crispector2/allele
2024-07-08T11:53:22,130   copying build/lib/crispector2/allele/random_reads_handler.py -> build/bdist.linux-armv7l/wheel/crispector2/allele
2024-07-08T11:53:22,132   copying build/lib/crispector2/allele/__init__.py -> build/bdist.linux-armv7l/wheel/crispector2/allele
2024-07-08T11:53:22,133   copying build/lib/crispector2/allele/allele_reference_df.py -> build/bdist.linux-armv7l/wheel/crispector2/allele
2024-07-08T11:53:22,135   copying build/lib/crispector2/crispector_main.py -> build/bdist.linux-armv7l/wheel/crispector2
2024-07-08T11:53:22,138   copying build/lib/crispector2/cli.py -> build/bdist.linux-armv7l/wheel/crispector2
2024-07-08T11:53:22,141   creating build/bdist.linux-armv7l/wheel/crispector2/modifications
2024-07-08T11:53:22,142   copying build/lib/crispector2/modifications/modification_tables.py -> build/bdist.linux-armv7l/wheel/crispector2/modifications
2024-07-08T11:53:22,144   copying build/lib/crispector2/modifications/__init__.py -> build/bdist.linux-armv7l/wheel/crispector2/modifications
2024-07-08T11:53:22,145   copying build/lib/crispector2/modifications/modification_types.py -> build/bdist.linux-armv7l/wheel/crispector2/modifications
2024-07-08T11:53:22,147   copying build/lib/crispector2/__init__.py -> build/bdist.linux-armv7l/wheel/crispector2
2024-07-08T11:53:22,150   creating build/bdist.linux-armv7l/wheel/crispector2/input_processing
2024-07-08T11:53:22,151   copying build/lib/crispector2/input_processing/input_processing.py -> build/bdist.linux-armv7l/wheel/crispector2/input_processing
2024-07-08T11:53:22,153   copying build/lib/crispector2/input_processing/alignment.py -> build/bdist.linux-armv7l/wheel/crispector2/input_processing
2024-07-08T11:53:22,156   copying build/lib/crispector2/input_processing/utils.py -> build/bdist.linux-armv7l/wheel/crispector2/input_processing
2024-07-08T11:53:22,158   copying build/lib/crispector2/input_processing/__init__.py -> build/bdist.linux-armv7l/wheel/crispector2/input_processing
2024-07-08T11:53:22,160   creating build/bdist.linux-armv7l/wheel/crispector2/algorithm
2024-07-08T11:53:22,161   copying build/lib/crispector2/algorithm/translocations_original.py -> build/bdist.linux-armv7l/wheel/crispector2/algorithm
2024-07-08T11:53:22,164   copying build/lib/crispector2/algorithm/binomial_probability.py -> build/bdist.linux-armv7l/wheel/crispector2/algorithm
2024-07-08T11:53:22,166   copying build/lib/crispector2/algorithm/core_algorithm.py -> build/bdist.linux-armv7l/wheel/crispector2/algorithm
2024-07-08T11:53:22,168   copying build/lib/crispector2/algorithm/translocations.py -> build/bdist.linux-armv7l/wheel/crispector2/algorithm
2024-07-08T11:53:22,170   copying build/lib/crispector2/algorithm/__init__.py -> build/bdist.linux-armv7l/wheel/crispector2/algorithm
2024-07-08T11:53:22,171   running install_egg_info
2024-07-08T11:53:22,174   Copying crispector2.egg-info to build/bdist.linux-armv7l/wheel/crispector2-2.1.2-py3.11.egg-info
2024-07-08T11:53:22,185   running install_scripts
2024-07-08T11:53:22,205   creating build/bdist.linux-armv7l/wheel/crispector2-2.1.2.dist-info/WHEEL
2024-07-08T11:53:22,208   creating '/tmp/pip-wheel-n36turbs/.tmp-o0a7bweh/crispector2-2.1.2-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2024-07-08T11:53:22,210   adding 'crispector2/__init__.py'
2024-07-08T11:53:22,212   adding 'crispector2/cli.py'
2024-07-08T11:53:22,214   adding 'crispector2/crispector_main.py'
2024-07-08T11:53:22,216   adding 'crispector2/algorithm/__init__.py'
2024-07-08T11:53:22,217   adding 'crispector2/algorithm/binomial_probability.py'
2024-07-08T11:53:22,219   adding 'crispector2/algorithm/core_algorithm.py'
2024-07-08T11:53:22,221   adding 'crispector2/algorithm/translocations.py'
2024-07-08T11:53:22,222   adding 'crispector2/algorithm/translocations_original.py'
2024-07-08T11:53:22,224   adding 'crispector2/allele/__init__.py'
2024-07-08T11:53:22,229   adding 'crispector2/allele/allele_mock.py'
2024-07-08T11:53:22,230   adding 'crispector2/allele/allele_reference_df.py'
2024-07-08T11:53:22,232   adding 'crispector2/allele/allele_tx.py'
2024-07-08T11:53:22,233   adding 'crispector2/allele/inconsistent_allele_freq.py'
2024-07-08T11:53:22,237   adding 'crispector2/allele/random_reads_handler.py'
2024-07-08T11:53:22,238   adding 'crispector2/config/__init__.py'
2024-07-08T11:53:22,240   adding 'crispector2/config/default_config.yml'
2024-07-08T11:53:22,241   adding 'crispector2/input_processing/__init__.py'
2024-07-08T11:53:22,245   adding 'crispector2/input_processing/alignment.py'
2024-07-08T11:53:22,249   adding 'crispector2/input_processing/input_processing.py'
2024-07-08T11:53:22,251   adding 'crispector2/input_processing/utils.py'
2024-07-08T11:53:22,252   adding 'crispector2/modifications/__init__.py'
2024-07-08T11:53:22,254   adding 'crispector2/modifications/modification_tables.py'
2024-07-08T11:53:22,256   adding 'crispector2/modifications/modification_types.py'
2024-07-08T11:53:22,257   adding 'crispector2/report/__init__.py'
2024-07-08T11:53:22,259   adding 'crispector2/report/html_report.py'
2024-07-08T11:53:22,265   adding 'crispector2/report/visualization_and_output.py'
2024-07-08T11:53:22,267   adding 'crispector2/report/html_templates/.DS_Store'
2024-07-08T11:53:22,288   adding 'crispector2/report/html_templates/crispector_logo.jpg'
2024-07-08T11:53:22,310   adding 'crispector2/report/html_templates/crispector_logo.png'
2024-07-08T11:53:22,313   adding 'crispector2/report/html_templates/file_to_render.html'
2024-07-08T11:53:22,315   adding 'crispector2/report/html_templates/file_to_render_old.html'
2024-07-08T11:53:22,317   adding 'crispector2/report/html_templates/final_layout.html'
2024-07-08T11:53:22,318   adding 'crispector2/report/html_templates/final_layout_old.html'
2024-07-08T11:53:22,320   adding 'crispector2/report/html_templates/site_file_to_render.html'
2024-07-08T11:53:22,322   adding 'crispector2/report/html_templates/site_layout.html'
2024-07-08T11:53:22,323   adding 'crispector2/utils/__init__.py'
2024-07-08T11:53:22,325   adding 'crispector2/utils/configurator.py'
2024-07-08T11:53:22,326   adding 'crispector2/utils/constants_and_types.py'
2024-07-08T11:53:22,328   adding 'crispector2/utils/constants_and_types_old.py'
2024-07-08T11:53:22,330   adding 'crispector2/utils/exceptions.py'
2024-07-08T11:53:22,331   adding 'crispector2/utils/logger.py'
2024-07-08T11:53:22,333   adding 'crispector2-2.1.2.dist-info/LICENSE'
2024-07-08T11:53:22,336   adding 'crispector2-2.1.2.dist-info/METADATA'
2024-07-08T11:53:22,337   adding 'crispector2-2.1.2.dist-info/WHEEL'
2024-07-08T11:53:22,338   adding 'crispector2-2.1.2.dist-info/entry_points.txt'
2024-07-08T11:53:22,339   adding 'crispector2-2.1.2.dist-info/top_level.txt'
2024-07-08T11:53:22,340   adding 'crispector2-2.1.2.dist-info/RECORD'
2024-07-08T11:53:22,347   removing build/bdist.linux-armv7l/wheel
2024-07-08T11:53:22,478   Building wheel for crispector2 (pyproject.toml): finished with status 'done'
2024-07-08T11:53:22,491   Created wheel for crispector2: filename=crispector2-2.1.2-py3-none-any.whl size=440988 sha256=5f3bdfa2b26a0fba7f46a6a7c4ca04e5ebdd73da5b287711705e6633f6f951a6
2024-07-08T11:53:22,492   Stored in directory: /tmp/pip-ephem-wheel-cache-wrw_tmx5/wheels/85/9f/27/f264480e34ce7fab253de497f86c2519322e9a3ce6e5ea1298
2024-07-08T11:53:22,507 Successfully built crispector2
2024-07-08T11:53:22,529 Removed build tracker: '/tmp/pip-build-tracker-z5skz1xl'