2024-07-09T19:01:33,260 Created temporary directory: /tmp/pip-build-tracker-l5r1_7ti 2024-07-09T19:01:33,261 Initialized build tracking at /tmp/pip-build-tracker-l5r1_7ti 2024-07-09T19:01:33,262 Created build tracker: /tmp/pip-build-tracker-l5r1_7ti 2024-07-09T19:01:33,262 Entered build tracker: /tmp/pip-build-tracker-l5r1_7ti 2024-07-09T19:01:33,263 Created temporary directory: /tmp/pip-wheel-r7fgqojy 2024-07-09T19:01:33,266 Created temporary directory: /tmp/pip-ephem-wheel-cache-_toj8bqy 2024-07-09T19:01:33,287 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2024-07-09T19:01:33,291 2 location(s) to search for versions of multiqc: 2024-07-09T19:01:33,291 * https://pypi.org/simple/multiqc/ 2024-07-09T19:01:33,291 * https://www.piwheels.org/simple/multiqc/ 2024-07-09T19:01:33,292 Fetching project page and analyzing links: https://pypi.org/simple/multiqc/ 2024-07-09T19:01:33,292 Getting page https://pypi.org/simple/multiqc/ 2024-07-09T19:01:33,294 Found index url https://pypi.org/simple/ 2024-07-09T19:01:33,506 Fetched page https://pypi.org/simple/multiqc/ as application/vnd.pypi.simple.v1+json 2024-07-09T19:01:33,517 Found link https://files.pythonhosted.org/packages/44/ae/59e74780d4c66afbbac9053d2b6b0f12aaef94e4ce92cb00b71a20025098/multiqc-0.1.tar.gz (from https://pypi.org/simple/multiqc/), version: 0.1 2024-07-09T19:01:33,518 Found link https://files.pythonhosted.org/packages/e9/7c/14ca085189df0aaba25054bf42fe3ceb74bcbee5c271d4c6f9c9c39bf1c0/multiqc-0.2.0.tar.gz (from https://pypi.org/simple/multiqc/), version: 0.2.0 2024-07-09T19:01:33,518 Found link https://files.pythonhosted.org/packages/5d/cd/08627e78e84acc038dcab2ee6403af9eca73b1203fe505645a2c33c316b0/multiqc-0.3.0.tar.gz (from https://pypi.org/simple/multiqc/), version: 0.3.0 2024-07-09T19:01:33,519 Found link https://files.pythonhosted.org/packages/47/bb/3339d0a27891c241de1bcc76122e779b67efad072140224a02e8700e5199/multiqc-0.3.1.tar.gz (from https://pypi.org/simple/multiqc/), version: 0.3.1 2024-07-09T19:01:33,520 Found link https://files.pythonhosted.org/packages/e5/56/76229fca10700a78fe4a51baf2de7385509a48c7d281f42d9d311a547d76/multiqc-0.3.2.tar.gz (from https://pypi.org/simple/multiqc/), version: 0.3.2 2024-07-09T19:01:33,520 Found link https://files.pythonhosted.org/packages/1c/e0/1e14407025dd461f1917354af543dcd912b669729ce77e0e0d29879d146e/multiqc-0.4.tar.gz (from https://pypi.org/simple/multiqc/), version: 0.4 2024-07-09T19:01:33,521 Found link https://files.pythonhosted.org/packages/08/1c/d9833670aee1303332713f456140730a7a8335cc97bc7aa3c67f37a3b0e1/multiqc-0.5.tar.gz (from https://pypi.org/simple/multiqc/), version: 0.5 2024-07-09T19:01:33,522 Found link https://files.pythonhosted.org/packages/23/d9/95a5e62eea95f220007d7a6683d0da1ee1d9f99e6932bcff793b6601ef15/multiqc-0.6.tar.gz (from https://pypi.org/simple/multiqc/), version: 0.6 2024-07-09T19:01:33,523 Found link https://files.pythonhosted.org/packages/6b/b7/839b0c84448856bd3b2e8c381c4778c4b9c22ded890881d1cd12f9e686fa/multiqc-0.7.tar.gz (from https://pypi.org/simple/multiqc/), version: 0.7 2024-07-09T19:01:33,524 Found link https://files.pythonhosted.org/packages/ab/e4/9a9eea1facbc3dcb7c90e38d3719eea43d4877aa54a887726982f1ba1671/multiqc-0.8.tar.gz (from https://pypi.org/simple/multiqc/), version: 0.8 2024-07-09T19:01:33,524 Found link https://files.pythonhosted.org/packages/ca/7b/b65089cad82caa2618298482c6c80967bb22aca5f64a50df91f0a2888172/multiqc-0.9.tar.gz (from https://pypi.org/simple/multiqc/), version: 0.9 2024-07-09T19:01:33,525 Found link https://files.pythonhosted.org/packages/61/79/92c1b7d04f87bf70405cbcd24ae059abd509b19b13b469934125311dbf9f/multiqc-1.0.tar.gz (from https://pypi.org/simple/multiqc/), version: 1.0 2024-07-09T19:01:33,526 Found link https://files.pythonhosted.org/packages/a0/7c/bb475d750a39917218d48fd592be147bbe47f76f6afaeda84e350bd973fb/multiqc-1.1.tar.gz (from https://pypi.org/simple/multiqc/), version: 1.1 2024-07-09T19:01:33,526 Found link https://files.pythonhosted.org/packages/7e/c5/5b7e713b892ceadfdb23afe74acd9f246298f880fa96a304276a235422b4/multiqc-1.2.tar.gz (from https://pypi.org/simple/multiqc/), version: 1.2 2024-07-09T19:01:33,527 Found link https://files.pythonhosted.org/packages/2c/af/1183857d4f2ade150fb2e22282ff11e6f5355419d129ca4ee7200022177f/multiqc-1.3.tar.gz (from https://pypi.org/simple/multiqc/), version: 1.3 2024-07-09T19:01:33,528 Found link https://files.pythonhosted.org/packages/af/a1/5c5702c4b0ce9ee6fb7d1c982cc6f20832a85bfce184dcb8178f0bdcb5df/multiqc-1.4.tar.gz (from https://pypi.org/simple/multiqc/), version: 1.4 2024-07-09T19:01:33,529 Found link https://files.pythonhosted.org/packages/fa/3e/fbdcbaebadad2110eed3b4212ced58617cbd9badbfc728c5eabc53916b84/multiqc-1.5.tar.gz (from https://pypi.org/simple/multiqc/), version: 1.5 2024-07-09T19:01:33,529 Found link https://files.pythonhosted.org/packages/0c/00/1fd8c0cc80531bf51a1a2b15928a408b0e8a442a6e59236edc2a76371284/multiqc-1.6.tar.gz (from https://pypi.org/simple/multiqc/), version: 1.6 2024-07-09T19:01:33,530 Found link https://files.pythonhosted.org/packages/6b/c7/817d8ef024866e00625d94bbfa26e7a4131eedc166b3d65d7f54ebc90ed6/multiqc-1.7.tar.gz (from https://pypi.org/simple/multiqc/), version: 1.7 2024-07-09T19:01:33,530 Found link https://files.pythonhosted.org/packages/d3/4b/1cf18ef697e5daa72dfa55d496167354e6ec7d78e87c696a52f338c2dc63/multiqc-1.8.tar.gz (from https://pypi.org/simple/multiqc/), version: 1.8 2024-07-09T19:01:33,531 Found link https://files.pythonhosted.org/packages/c8/2d/f0a6be15f861c5d165726d7afecd823ca158dff530b566379623a0e4534b/multiqc-1.9.tar.gz (from https://pypi.org/simple/multiqc/), version: 1.9 2024-07-09T19:01:33,532 Skipping link: No binaries permitted for multiqc: https://files.pythonhosted.org/packages/35/e5/dfccaa54058f2f5d2a83176bfee12ca65d631dba5dadda2a0c52ce25c45f/multiqc-1.10-py3-none-any.whl (from https://pypi.org/simple/multiqc/) 2024-07-09T19:01:33,533 Found link https://files.pythonhosted.org/packages/4e/39/cd87ee0581ead995b561635106d47cc9593687a76db9745a093d09fff1d9/multiqc-1.10.tar.gz (from https://pypi.org/simple/multiqc/), version: 1.10 2024-07-09T19:01:33,533 Skipping link: No binaries permitted for multiqc: https://files.pythonhosted.org/packages/87/80/2e648984b8080fd65cb7c8eaa948a90ce74e8391828e6f7bdd4d0d137242/multiqc-1.10.1-py3-none-any.whl (from https://pypi.org/simple/multiqc/) 2024-07-09T19:01:33,534 Found link https://files.pythonhosted.org/packages/ca/e7/549a185924157e427b951ac741c1312ee4b324be9585ad323617bb3077a4/multiqc-1.10.1.tar.gz (from https://pypi.org/simple/multiqc/), version: 1.10.1 2024-07-09T19:01:33,535 Skipping link: No binaries permitted for multiqc: https://files.pythonhosted.org/packages/2e/2a/4332775300481391ea5a7a1f35406f83f5812a2734eff5987c462c7e1ec7/multiqc-1.11-py3-none-any.whl (from https://pypi.org/simple/multiqc/) 2024-07-09T19:01:33,535 Found link https://files.pythonhosted.org/packages/22/23/3f94ffb423762201bcccf0e0cbf821fccf75673a9fedfb3e7c7ea491024d/multiqc-1.11.tar.gz (from https://pypi.org/simple/multiqc/), version: 1.11 2024-07-09T19:01:33,536 Skipping link: No binaries permitted for multiqc: https://files.pythonhosted.org/packages/08/74/23d79b7df154d5742e5b25b9cdf3cc352445290d90c7cc5fb770ba9911a4/multiqc-1.12-py3-none-any.whl (from https://pypi.org/simple/multiqc/) 2024-07-09T19:01:33,537 Found link https://files.pythonhosted.org/packages/6a/f0/122025f4521fd085c07d7a706f08819b4c6bed9e62cfe99453f8c5968ab9/multiqc-1.12.tar.gz (from https://pypi.org/simple/multiqc/), version: 1.12 2024-07-09T19:01:33,537 Skipping link: No binaries permitted for multiqc: https://files.pythonhosted.org/packages/1a/37/35f769e2be82ba3760a62a1cb39af42beee5334efa40cc7e151626e03c91/multiqc-1.13-py3-none-any.whl (from https://pypi.org/simple/multiqc/) 2024-07-09T19:01:33,538 Found link https://files.pythonhosted.org/packages/7b/cd/cbd2df3bf899f79ec4b20d5807262dfd3b6ce02245e852ece8dcdad250b1/multiqc-1.13.tar.gz (from https://pypi.org/simple/multiqc/), version: 1.13 2024-07-09T19:01:33,538 Skipping link: No binaries permitted for multiqc: https://files.pythonhosted.org/packages/11/4c/0f85a278cd37406f195115e38281478e9933c50f389b7c4d989af42cb9d1/multiqc-1.14-py3-none-any.whl (from https://pypi.org/simple/multiqc/) 2024-07-09T19:01:33,539 Found link https://files.pythonhosted.org/packages/ae/bb/3cb9d23ba28eb96a479161230626e3a11a04fc99899ac341ec949bc38bcb/multiqc-1.14.tar.gz (from https://pypi.org/simple/multiqc/), version: 1.14 2024-07-09T19:01:33,540 Skipping link: No binaries permitted for multiqc: https://files.pythonhosted.org/packages/65/cd/ef0884f0abb38c9662b11f212f463cdb022ef504c512719ccf13d4c728eb/multiqc-1.15-py3-none-any.whl (from https://pypi.org/simple/multiqc/) 2024-07-09T19:01:33,541 Found link https://files.pythonhosted.org/packages/ff/96/4ea623b57fef48f6b6c0a89757d53f7b4482b1ab950501617177d5c4a979/multiqc-1.15.tar.gz (from https://pypi.org/simple/multiqc/), version: 1.15 2024-07-09T19:01:33,541 Skipping link: No binaries permitted for multiqc: https://files.pythonhosted.org/packages/e0/6b/f6b8380c75a069c079c7b60b17d1cc0ec1c67a3c9623cfe4ee41a73fa9b4/multiqc-1.16-py3-none-any.whl (from https://pypi.org/simple/multiqc/) 2024-07-09T19:01:33,542 Found link https://files.pythonhosted.org/packages/36/3d/cc530c0cdd5c9dfd4e197c8147efa69c7da18023e8ef23d6daba4ac4e13c/multiqc-1.16.tar.gz (from https://pypi.org/simple/multiqc/), version: 1.16 2024-07-09T19:01:33,542 Skipping link: No binaries permitted for multiqc: https://files.pythonhosted.org/packages/a1/a5/2ee5d2546f04ef6addd930de9b772a6ee32151d4632319cde64aef822d50/multiqc-1.17-py3-none-any.whl (from https://pypi.org/simple/multiqc/) 2024-07-09T19:01:33,542 Found link https://files.pythonhosted.org/packages/e9/0d/2fc684e101ec6ce82ea5c1eaad1a0ab202fd08f50bee5847ef9e8168b7ad/multiqc-1.17.tar.gz (from https://pypi.org/simple/multiqc/), version: 1.17 2024-07-09T19:01:33,543 Skipping link: No binaries permitted for multiqc: https://files.pythonhosted.org/packages/ec/28/0e526e176fde109e06f0409e940e10893bc2e6e7d5cf91a44a3cf8ea214e/multiqc-1.18-py3-none-any.whl (from https://pypi.org/simple/multiqc/) 2024-07-09T19:01:33,543 Found link https://files.pythonhosted.org/packages/a5/17/6ed4268d6bc06489add671e5acbb7d429c97b99391b20d964689044cda77/multiqc-1.18.tar.gz (from https://pypi.org/simple/multiqc/), version: 1.18 2024-07-09T19:01:33,544 Skipping link: No binaries permitted for multiqc: https://files.pythonhosted.org/packages/d6/89/c164b49532afaf3308f809de48c519108592d0b204e368dca2a93b1b956b/multiqc-1.19-py3-none-any.whl (from https://pypi.org/simple/multiqc/) 2024-07-09T19:01:33,545 Found link https://files.pythonhosted.org/packages/1d/7c/0b3882a0916151b7877faef0f80ca403e1a7f4fc82b875b2dca32cdb8b89/multiqc-1.19.tar.gz (from https://pypi.org/simple/multiqc/), version: 1.19 2024-07-09T19:01:33,546 Skipping link: No binaries permitted for multiqc: https://files.pythonhosted.org/packages/6e/38/ec1edb7d5337c1bf4763e7ef0bb167ce14802742dff618a2fad3f251fb84/multiqc-1.20-py3-none-any.whl (from https://pypi.org/simple/multiqc/) 2024-07-09T19:01:33,546 Found link https://files.pythonhosted.org/packages/8c/c2/6016a7cb33e904a2637da26065a45198f8ed88bc9461d30a177c130360f8/multiqc-1.20.tar.gz (from https://pypi.org/simple/multiqc/), version: 1.20 2024-07-09T19:01:33,547 Skipping link: No binaries permitted for multiqc: https://files.pythonhosted.org/packages/05/93/f3d9efa1c949050e73a504e350a2f399bcc6c7db30e132e7469ce30cc36c/multiqc-1.21-py3-none-any.whl (from https://pypi.org/simple/multiqc/) (requires-python:>=3.8) 2024-07-09T19:01:33,548 Found link https://files.pythonhosted.org/packages/d7/4a/69fa3d76fb71a50c3f0f22a5b4d3fd6db3956f631862804f6524b66122d6/multiqc-1.21.tar.gz (from https://pypi.org/simple/multiqc/) (requires-python:>=3.8), version: 1.21 2024-07-09T19:01:33,548 Skipping link: No binaries permitted for multiqc: https://files.pythonhosted.org/packages/81/bc/5780dd13065676e4b1befca4345e18734a71ebc4f11db0cc1b4b3f325c36/multiqc-1.22-py3-none-any.whl (from https://pypi.org/simple/multiqc/) (requires-python:>=3.8) 2024-07-09T19:01:33,549 Found link https://files.pythonhosted.org/packages/b4/60/ed18675ca283a2c7469308399789240f31f2f6f340ed192f264993361a83/multiqc-1.22.tar.gz (from https://pypi.org/simple/multiqc/) (requires-python:>=3.8), version: 1.22 2024-07-09T19:01:33,550 Skipping link: No binaries permitted for multiqc: https://files.pythonhosted.org/packages/f6/12/f2dc24575e39d559e759aa02b4fb63d5e1e1a025420d08c497346b229e9c/multiqc-1.22.1-py3-none-any.whl (from https://pypi.org/simple/multiqc/) (requires-python:>=3.8) 2024-07-09T19:01:33,551 Found link https://files.pythonhosted.org/packages/6e/fa/2f25f892aaa7ef113f18c546ecdf3439fddd1ab1bfbc2bcd113b9ed2e3b6/multiqc-1.22.1.tar.gz (from https://pypi.org/simple/multiqc/) (requires-python:>=3.8), version: 1.22.1 2024-07-09T19:01:33,552 Skipping link: No binaries permitted for multiqc: https://files.pythonhosted.org/packages/65/b7/e3d91164ae9c94ffea6b66db2cf831a6cdde01880a834449eaaa8dc10e75/multiqc-1.22.2-py3-none-any.whl (from https://pypi.org/simple/multiqc/) (requires-python:>=3.8) 2024-07-09T19:01:33,553 Found link https://files.pythonhosted.org/packages/66/cb/0231ed0141cdd68b1dde84027232c0d4aaf4f8ef79187a2de2246e1d83e9/multiqc-1.22.2.tar.gz (from https://pypi.org/simple/multiqc/) (requires-python:>=3.8), version: 1.22.2 2024-07-09T19:01:33,553 Skipping link: No binaries permitted for multiqc: https://files.pythonhosted.org/packages/7f/ac/ab3d945b8b3baf29336797b0e42cead352af0750b793ccb6ac03e0ca5442/multiqc-1.22.3-py3-none-any.whl (from https://pypi.org/simple/multiqc/) (requires-python:>=3.8) 2024-07-09T19:01:33,554 Found link https://files.pythonhosted.org/packages/5d/fd/c56e8f84adc8f33f141a21523a2d23f6e4fce5720937e0eef9d11723eb80/multiqc-1.22.3.tar.gz (from https://pypi.org/simple/multiqc/) (requires-python:>=3.8), version: 1.22.3 2024-07-09T19:01:33,554 Skipping link: No binaries permitted for multiqc: https://files.pythonhosted.org/packages/f2/ca/5f71192b9c9e1db785f17be34cfacfbf398ad1d93f0d88c3a7640586db1e/multiqc-1.23-py3-none-any.whl (from https://pypi.org/simple/multiqc/) (requires-python:>=3.8) 2024-07-09T19:01:33,555 Found link https://files.pythonhosted.org/packages/56/07/06d03641b939dbcc938241fbe7086064aa230615777604e01d8fd2577800/multiqc-1.23.tar.gz (from https://pypi.org/simple/multiqc/) (requires-python:>=3.8), version: 1.23 2024-07-09T19:01:33,556 Fetching project page and analyzing links: https://www.piwheels.org/simple/multiqc/ 2024-07-09T19:01:33,557 Getting page https://www.piwheels.org/simple/multiqc/ 2024-07-09T19:01:33,558 Found index url https://www.piwheels.org/simple/ 2024-07-09T19:01:33,724 Fetched page https://www.piwheels.org/simple/multiqc/ as text/html 2024-07-09T19:01:33,734 Skipping link: No binaries permitted for multiqc: https://www.piwheels.org/simple/multiqc/multiqc-1.22.3-py3-none-any.whl#sha256=6af0a3d52e84998e7623ce3466d37d3da72c00ed69ec8dd93e118144ed78a223 (from https://www.piwheels.org/simple/multiqc/) (requires-python:>=3.8) 2024-07-09T19:01:33,735 Skipping link: No binaries permitted for multiqc: https://www.piwheels.org/simple/multiqc/multiqc-1.22.2-py3-none-any.whl#sha256=0766bae07eba16a1e5d325f47779b039cdc1f3c8767f4fe382e2c6e05a00f75f (from https://www.piwheels.org/simple/multiqc/) (requires-python:>=3.8) 2024-07-09T19:01:33,736 Skipping link: No binaries permitted for multiqc: https://www.piwheels.org/simple/multiqc/multiqc-1.22.1-py3-none-any.whl#sha256=6c30c3537fb106035f5ef11d18305211ea1aa76c8b5ec9ecf28abe5423433408 (from https://www.piwheels.org/simple/multiqc/) (requires-python:>=3.8) 2024-07-09T19:01:33,736 Skipping link: No binaries permitted for multiqc: https://www.piwheels.org/simple/multiqc/multiqc-1.22-py3-none-any.whl#sha256=18f07e1a35ccfb9ef4ef2b78fe2cee9ea86c93543d51c7518aa87bdf06a7c0ff (from https://www.piwheels.org/simple/multiqc/) (requires-python:>=3.8) 2024-07-09T19:01:33,737 Skipping link: No binaries permitted for multiqc: https://www.piwheels.org/simple/multiqc/multiqc-1.21-py3-none-any.whl#sha256=66bad70b6b309118590096feb58c3855aa0a646c5828d5162776b3e954dcabb0 (from https://www.piwheels.org/simple/multiqc/) (requires-python:>=3.8) 2024-07-09T19:01:33,737 Skipping link: No binaries permitted for multiqc: https://www.piwheels.org/simple/multiqc/multiqc-1.20-py3-none-any.whl#sha256=761b9ace340a048c13c61645e020f0afe3284e1d4bace8fca65fc45c560ccd12 (from https://www.piwheels.org/simple/multiqc/) 2024-07-09T19:01:33,738 Skipping link: No binaries permitted for multiqc: https://www.piwheels.org/simple/multiqc/multiqc-1.19-py3-none-any.whl#sha256=95392f476f57d4e6409a8840c07548b80fa1ad6a914ec4fd1f0d5ba4674c1f4b (from https://www.piwheels.org/simple/multiqc/) 2024-07-09T19:01:33,739 Skipping link: No binaries permitted for multiqc: https://www.piwheels.org/simple/multiqc/multiqc-1.18-py3-none-any.whl#sha256=6571d2a944e15103a4d824a1bada8a8d1d11a5369665b0bcebd80bdb402dac7a (from https://www.piwheels.org/simple/multiqc/) 2024-07-09T19:01:33,739 Skipping link: No binaries permitted for multiqc: https://www.piwheels.org/simple/multiqc/multiqc-1.17-py3-none-any.whl#sha256=3dc28a2d049c186d903291a1db4451f0a5a8fef09e66e057baf0acd6179e6263 (from https://www.piwheels.org/simple/multiqc/) 2024-07-09T19:01:33,740 Skipping link: No binaries permitted for multiqc: https://www.piwheels.org/simple/multiqc/multiqc-1.16-py3-none-any.whl#sha256=03cca6a0517a1d55a342d26623de81f9cac003da50a6fe2e9e8450ce798ec2fa (from https://www.piwheels.org/simple/multiqc/) 2024-07-09T19:01:33,740 Skipping link: No binaries permitted for multiqc: https://www.piwheels.org/simple/multiqc/multiqc-1.15-py3-none-any.whl#sha256=b8e2124a3861980ad09b76cddb6765026adbbccf6744750bede1e09f8a938cb5 (from https://www.piwheels.org/simple/multiqc/) 2024-07-09T19:01:33,741 Skipping link: No binaries permitted for multiqc: https://www.piwheels.org/simple/multiqc/multiqc-1.14-py3-none-any.whl#sha256=77b5c82fcefdd31644526d308c1eb7b7089ad0603a489df6c628cfe8643aa301 (from https://www.piwheels.org/simple/multiqc/) 2024-07-09T19:01:33,741 Skipping link: No binaries permitted for multiqc: https://www.piwheels.org/simple/multiqc/multiqc-1.13-py3-none-any.whl#sha256=6d6952eddd313ed10111a2a56abf5421e4418808c270c772f6f35ec7523f0976 (from https://www.piwheels.org/simple/multiqc/) 2024-07-09T19:01:33,742 Skipping link: No binaries permitted for multiqc: https://www.piwheels.org/simple/multiqc/multiqc-1.12-py3-none-any.whl#sha256=67987570ac064a0c09bb6a22e69589384484762af8cac9e4a688f51522a4e8a3 (from https://www.piwheels.org/simple/multiqc/) 2024-07-09T19:01:33,742 Skipping link: No binaries permitted for multiqc: https://www.piwheels.org/simple/multiqc/multiqc-1.11-py3-none-any.whl#sha256=b2ea91646a12c0e31df6f5d29509d6ab0e371916b55d7f35b3e3a03bdcc0ef3d (from https://www.piwheels.org/simple/multiqc/) 2024-07-09T19:01:33,743 Skipping link: No binaries permitted for multiqc: https://www.piwheels.org/simple/multiqc/multiqc-1.10.1-py3-none-any.whl#sha256=213b2a50f377d47c3203aadbe59374e5f392ed700c3c8b99b25a321c6504433b (from https://www.piwheels.org/simple/multiqc/) 2024-07-09T19:01:33,743 Skipping link: No binaries permitted for multiqc: https://www.piwheels.org/simple/multiqc/multiqc-1.10-py3-none-any.whl#sha256=d50081f549cebbfd77e5ee016efc19d9860e63e14faac945bebb55707bdcde8d (from https://www.piwheels.org/simple/multiqc/) 2024-07-09T19:01:33,744 Skipping link: No binaries permitted for multiqc: https://www.piwheels.org/simple/multiqc/multiqc-1.9-py3-none-any.whl#sha256=28cad8bafce03a40b71bffb8c9d6b0a91b46db72750069b4b2a4760650a1e7ab (from https://www.piwheels.org/simple/multiqc/) 2024-07-09T19:01:33,745 Skipping link: No binaries permitted for multiqc: https://www.piwheels.org/simple/multiqc/multiqc-1.8-py3-none-any.whl#sha256=5c1de3fffcfc9ff6ae686c8b47b1bcc3eeab0bcb6ec104fdafbc920c4861fbb7 (from https://www.piwheels.org/simple/multiqc/) 2024-07-09T19:01:33,745 Skipping link: No binaries permitted for multiqc: https://www.piwheels.org/simple/multiqc/multiqc-1.7-py3-none-any.whl#sha256=78412742db690568f7481fd2e021dc148be2862519e3f193d20cbf957e6f0338 (from https://www.piwheels.org/simple/multiqc/) 2024-07-09T19:01:33,746 Skipping link: No binaries permitted for multiqc: https://www.piwheels.org/simple/multiqc/multiqc-1.6-py3-none-any.whl#sha256=e1600e93d93041641028f3364fa493f6f35a7b765d5f0aafd73089ace6f062e6 (from https://www.piwheels.org/simple/multiqc/) 2024-07-09T19:01:33,746 Skipping link: No binaries permitted for multiqc: https://www.piwheels.org/simple/multiqc/multiqc-1.5-py3-none-any.whl#sha256=18ee8675a1f316d459b91049c42fde5061c6ae863063408fa063a4ecbeb0d527 (from https://www.piwheels.org/simple/multiqc/) 2024-07-09T19:01:33,747 Skipping link: No binaries permitted for multiqc: https://www.piwheels.org/simple/multiqc/multiqc-1.4-py3-none-any.whl#sha256=02e593c71a8c2ed237d3f0138051b8e8c7f7f7c018ecc51b0cf46a17ad8c3f7f (from https://www.piwheels.org/simple/multiqc/) 2024-07-09T19:01:33,748 Skipping link: No binaries permitted for multiqc: https://www.piwheels.org/simple/multiqc/multiqc-1.3-py3-none-any.whl#sha256=780ff22fadd86cb81d9afe67c858e478ada911ed296d7d3f430a1da03059f96f (from https://www.piwheels.org/simple/multiqc/) 2024-07-09T19:01:33,748 Skipping link: No binaries permitted for multiqc: https://www.piwheels.org/simple/multiqc/multiqc-1.2-py3-none-any.whl#sha256=a2d3ab5bfec00fcaeb2b6b02477683cb026b7e803238094f6ba5706e9911e5db (from https://www.piwheels.org/simple/multiqc/) 2024-07-09T19:01:33,749 Skipping link: No binaries permitted for multiqc: https://www.piwheels.org/simple/multiqc/multiqc-1.1-py3-none-any.whl#sha256=17b18b185ba21595f7b6ab85364b590b11f5b90666bedd3fef8779d986b8783b (from https://www.piwheels.org/simple/multiqc/) 2024-07-09T19:01:33,749 Skipping link: No binaries permitted for multiqc: https://www.piwheels.org/simple/multiqc/multiqc-1.0-py3-none-any.whl#sha256=24119737c52e447f7913e17ef08e0a0e7218dd10ac535aa8eddb5181906eca44 (from https://www.piwheels.org/simple/multiqc/) 2024-07-09T19:01:33,749 Skipping link: No binaries permitted for multiqc: https://www.piwheels.org/simple/multiqc/multiqc-0.9-py3-none-any.whl#sha256=8e08076a99a715a117ba6a56d8d23be94585467dff12235fde06aa32894f3588 (from https://www.piwheels.org/simple/multiqc/) 2024-07-09T19:01:33,750 Skipping link: No binaries permitted for multiqc: https://www.piwheels.org/simple/multiqc/multiqc-0.8-py3-none-any.whl#sha256=24d31f7b916c4c11cb816a515f858d222d26027a5938cef4f0c3f52ad37e3329 (from https://www.piwheels.org/simple/multiqc/) 2024-07-09T19:01:33,750 Skipping link: No binaries permitted for multiqc: https://www.piwheels.org/simple/multiqc/multiqc-0.7-py3-none-any.whl#sha256=27df9fe1e307b2b16f157f3a1548b69b44f18346fdd66794327008ade6ab90db (from https://www.piwheels.org/simple/multiqc/) 2024-07-09T19:01:33,751 Skipping link: No binaries permitted for multiqc: https://www.piwheels.org/simple/multiqc/multiqc-0.6-py3-none-any.whl#sha256=14044c5aa5f26ae68a9f1c47423f113e7a0d3e95d5b16dd4dcad1df4f7621982 (from https://www.piwheels.org/simple/multiqc/) 2024-07-09T19:01:33,752 Skipping link: No binaries permitted for multiqc: https://www.piwheels.org/simple/multiqc/multiqc-0.5-py3-none-any.whl#sha256=5528eef1c13487a576717815ce7548964978e93f4668d414eb835d0267cd84ff (from https://www.piwheels.org/simple/multiqc/) 2024-07-09T19:01:33,752 Skipping link: No binaries permitted for multiqc: https://www.piwheels.org/simple/multiqc/multiqc-0.4-py3-none-any.whl#sha256=f67c3af42d83144411f956e962f736ef90b3e1946dd279ae47720a5142dd9a23 (from https://www.piwheels.org/simple/multiqc/) 2024-07-09T19:01:33,753 Skipping link: No binaries permitted for multiqc: https://www.piwheels.org/simple/multiqc/multiqc-0.3.2-py3-none-any.whl#sha256=ca3e9c65ab5f1290d0e5ce999ac078ec0b75633ac8b64bc38f79d41a442f0147 (from https://www.piwheels.org/simple/multiqc/) 2024-07-09T19:01:33,753 Skipping link: No binaries permitted for multiqc: https://www.piwheels.org/simple/multiqc/multiqc-0.3.1-py3-none-any.whl#sha256=e3fcc96c755277a57d0e7b1b8fac3256ff45b164d7a77655e169f54983470565 (from https://www.piwheels.org/simple/multiqc/) 2024-07-09T19:01:33,754 Skipping link: No binaries permitted for multiqc: https://www.piwheels.org/simple/multiqc/multiqc-0.3.0-py3-none-any.whl#sha256=d1c8d281f8a75ded36ccdafbc131072a3ee9a5ddd896d32dd22f9945141a6b12 (from https://www.piwheels.org/simple/multiqc/) 2024-07-09T19:01:33,754 Skipping link: No binaries permitted for multiqc: https://www.piwheels.org/simple/multiqc/multiqc-0.2.0-py3-none-any.whl#sha256=1ec95a9f8508ed8aee9eb0c6f7f3f77f6d477bf1405395854a1e2a1d2b5ea053 (from https://www.piwheels.org/simple/multiqc/) 2024-07-09T19:01:33,755 Skipping link: No binaries permitted for multiqc: https://www.piwheels.org/simple/multiqc/multiqc-0.1-py3-none-any.whl#sha256=aadbe1a0321716289d4557925ecb20ef7bb769a99c42ac213284f8c0af4eb0ea (from https://www.piwheels.org/simple/multiqc/) 2024-07-09T19:01:33,756 Skipping link: not a file: https://www.piwheels.org/simple/multiqc/ 2024-07-09T19:01:33,756 Skipping link: not a file: https://pypi.org/simple/multiqc/ 2024-07-09T19:01:33,781 Given no hashes to check 1 links for project 'multiqc': discarding no candidates 2024-07-09T19:01:33,801 Collecting multiqc==1.23 2024-07-09T19:01:33,804 Created temporary directory: /tmp/pip-unpack-3y3emr37 2024-07-09T19:01:34,265 Downloading multiqc-1.23.tar.gz (4.2 MB) 2024-07-09T19:01:43,294 Added multiqc==1.23 from https://files.pythonhosted.org/packages/56/07/06d03641b939dbcc938241fbe7086064aa230615777604e01d8fd2577800/multiqc-1.23.tar.gz to build tracker '/tmp/pip-build-tracker-l5r1_7ti' 2024-07-09T19:01:43,305 Created temporary directory: /tmp/pip-build-env-abllg6kk 2024-07-09T19:01:43,309 Installing build dependencies: started 2024-07-09T19:01:43,310 Running command pip subprocess to install build dependencies 2024-07-09T19:01:44,450 Using pip 24.0 from /usr/local/lib/python3.11/dist-packages/pip (python 3.11) 2024-07-09T19:01:44,982 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2024-07-09T19:01:46,453 Collecting setuptools 2024-07-09T19:01:46,468 Using cached https://www.piwheels.org/simple/setuptools/setuptools-70.3.0-py3-none-any.whl (931 kB) 2024-07-09T19:01:49,083 Installing collected packages: setuptools 2024-07-09T19:01:51,621 Successfully installed setuptools-70.3.0 2024-07-09T19:01:51,938 [notice] A new release of pip is available: 24.0 -> 24.1.2 2024-07-09T19:01:51,938 [notice] To update, run: python3 -m pip install --upgrade pip 2024-07-09T19:01:52,206 Installing build dependencies: finished with status 'done' 2024-07-09T19:01:52,210 Getting requirements to build wheel: started 2024-07-09T19:01:52,211 Running command Getting requirements to build wheel 2024-07-09T19:01:53,044 running egg_info 2024-07-09T19:01:53,048 writing multiqc.egg-info/PKG-INFO 2024-07-09T19:01:53,056 writing dependency_links to multiqc.egg-info/dependency_links.txt 2024-07-09T19:01:53,063 writing entry points to multiqc.egg-info/entry_points.txt 2024-07-09T19:01:53,067 writing requirements to multiqc.egg-info/requires.txt 2024-07-09T19:01:53,069 writing top-level names to multiqc.egg-info/top_level.txt 2024-07-09T19:01:53,083 reading manifest file 'multiqc.egg-info/SOURCES.txt' 2024-07-09T19:01:53,167 reading manifest template 'MANIFEST.in' 2024-07-09T19:01:53,438 adding license file 'LICENSE' 2024-07-09T19:01:53,462 writing manifest file 'multiqc.egg-info/SOURCES.txt' 2024-07-09T19:01:53,582 Getting requirements to build wheel: finished with status 'done' 2024-07-09T19:01:53,586 Created temporary directory: /tmp/pip-modern-metadata-llrfa9jm 2024-07-09T19:01:53,588 Preparing metadata (pyproject.toml): started 2024-07-09T19:01:53,589 Running command Preparing metadata (pyproject.toml) 2024-07-09T19:01:54,352 running dist_info 2024-07-09T19:01:54,356 creating /tmp/pip-modern-metadata-llrfa9jm/multiqc.egg-info 2024-07-09T19:01:54,360 writing /tmp/pip-modern-metadata-llrfa9jm/multiqc.egg-info/PKG-INFO 2024-07-09T19:01:54,368 writing dependency_links to /tmp/pip-modern-metadata-llrfa9jm/multiqc.egg-info/dependency_links.txt 2024-07-09T19:01:54,375 writing entry points to /tmp/pip-modern-metadata-llrfa9jm/multiqc.egg-info/entry_points.txt 2024-07-09T19:01:54,379 writing requirements to /tmp/pip-modern-metadata-llrfa9jm/multiqc.egg-info/requires.txt 2024-07-09T19:01:54,380 writing top-level names to /tmp/pip-modern-metadata-llrfa9jm/multiqc.egg-info/top_level.txt 2024-07-09T19:01:54,382 writing manifest file '/tmp/pip-modern-metadata-llrfa9jm/multiqc.egg-info/SOURCES.txt' 2024-07-09T19:01:54,394 reading manifest file '/tmp/pip-modern-metadata-llrfa9jm/multiqc.egg-info/SOURCES.txt' 2024-07-09T19:01:54,396 reading manifest template 'MANIFEST.in' 2024-07-09T19:01:54,628 adding license file 'LICENSE' 2024-07-09T19:01:54,646 writing manifest file '/tmp/pip-modern-metadata-llrfa9jm/multiqc.egg-info/SOURCES.txt' 2024-07-09T19:01:54,648 creating '/tmp/pip-modern-metadata-llrfa9jm/multiqc-1.23.dist-info' 2024-07-09T19:01:54,806 Preparing metadata (pyproject.toml): finished with status 'done' 2024-07-09T19:01:54,817 Source in /tmp/pip-wheel-r7fgqojy/multiqc_06382ab4813645888edc705c6c9f1abb has version 1.23, which satisfies requirement multiqc==1.23 from https://files.pythonhosted.org/packages/56/07/06d03641b939dbcc938241fbe7086064aa230615777604e01d8fd2577800/multiqc-1.23.tar.gz 2024-07-09T19:01:54,818 Removed multiqc==1.23 from https://files.pythonhosted.org/packages/56/07/06d03641b939dbcc938241fbe7086064aa230615777604e01d8fd2577800/multiqc-1.23.tar.gz from build tracker '/tmp/pip-build-tracker-l5r1_7ti' 2024-07-09T19:01:54,837 Created temporary directory: /tmp/pip-unpack-qf3dqxrn 2024-07-09T19:01:54,838 Created temporary directory: /tmp/pip-unpack-qcfdg559 2024-07-09T19:01:54,896 Building wheels for collected packages: multiqc 2024-07-09T19:01:54,902 Created temporary directory: /tmp/pip-wheel-_6dmoobp 2024-07-09T19:01:54,902 Destination directory: /tmp/pip-wheel-_6dmoobp 2024-07-09T19:01:54,904 Building wheel for multiqc (pyproject.toml): started 2024-07-09T19:01:54,906 Running command Building wheel for multiqc (pyproject.toml) 2024-07-09T19:01:55,683 running bdist_wheel 2024-07-09T19:01:55,697 running build 2024-07-09T19:01:55,697 running build_py 2024-07-09T19:01:55,702 creating build 2024-07-09T19:01:55,702 creating build/lib 2024-07-09T19:01:55,703 creating build/lib/multiqc 2024-07-09T19:01:55,705 copying multiqc/multiqc.py -> build/lib/multiqc 2024-07-09T19:01:55,708 copying multiqc/interactive.py -> build/lib/multiqc 2024-07-09T19:01:55,710 copying multiqc/config.py -> build/lib/multiqc 2024-07-09T19:01:55,712 copying multiqc/report.py -> build/lib/multiqc 2024-07-09T19:01:55,716 copying multiqc/validation.py -> build/lib/multiqc 2024-07-09T19:01:55,718 copying multiqc/base_module.py -> build/lib/multiqc 2024-07-09T19:01:55,721 copying multiqc/__init__.py -> build/lib/multiqc 2024-07-09T19:01:55,723 copying multiqc/__main__.py -> build/lib/multiqc 2024-07-09T19:01:55,724 running egg_info 2024-07-09T19:01:55,727 writing multiqc.egg-info/PKG-INFO 2024-07-09T19:01:55,735 writing dependency_links to multiqc.egg-info/dependency_links.txt 2024-07-09T19:01:55,742 writing entry points to multiqc.egg-info/entry_points.txt 2024-07-09T19:01:55,745 writing requirements to multiqc.egg-info/requires.txt 2024-07-09T19:01:55,746 writing top-level names to multiqc.egg-info/top_level.txt 2024-07-09T19:01:55,754 reading manifest file 'multiqc.egg-info/SOURCES.txt' 2024-07-09T19:01:55,767 reading manifest template 'MANIFEST.in' 2024-07-09T19:01:56,027 adding license file 'LICENSE' 2024-07-09T19:01:56,051 writing manifest file 'multiqc.egg-info/SOURCES.txt' 2024-07-09T19:01:56,054 /tmp/pip-build-env-abllg6kk/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.core' is absent from the `packages` configuration. 2024-07-09T19:01:56,055 !! 2024-07-09T19:01:56,056 ******************************************************************************** 2024-07-09T19:01:56,057 ############################ 2024-07-09T19:01:56,057 # Package would be ignored # 2024-07-09T19:01:56,058 ############################ 2024-07-09T19:01:56,059 Python recognizes 'multiqc.core' as an importable package[^1], 2024-07-09T19:01:56,059 but it is absent from setuptools' `packages` configuration. 2024-07-09T19:01:56,061 This leads to an ambiguous overall configuration. If you want to distribute this 2024-07-09T19:01:56,061 package, please make sure that 'multiqc.core' is explicitly added 2024-07-09T19:01:56,062 to the `packages` configuration field. 2024-07-09T19:01:56,063 Alternatively, you can also rely on setuptools' discovery methods 2024-07-09T19:01:56,064 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-07-09T19:01:56,064 instead of `find_packages(...)`/`find:`). 2024-07-09T19:01:56,065 You can read more about "package discovery" on setuptools documentation page: 2024-07-09T19:01:56,066 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-07-09T19:01:56,067 If you don't want 'multiqc.core' to be distributed and are 2024-07-09T19:01:56,067 already explicitly excluding 'multiqc.core' via 2024-07-09T19:01:56,068 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-07-09T19:01:56,068 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-07-09T19:01:56,069 combination with a more fine grained `package-data` configuration. 2024-07-09T19:01:56,069 You can read more about "package data files" on setuptools documentation page: 2024-07-09T19:01:56,070 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-07-09T19:01:56,071 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-07-09T19:01:56,072 even if it does not contain any `.py` files. 2024-07-09T19:01:56,072 On the other hand, currently there is no concept of package data 2024-07-09T19:01:56,072 directory, all directories are treated like packages. 2024-07-09T19:01:56,073 ******************************************************************************** 2024-07-09T19:01:56,074 !! 2024-07-09T19:01:56,074 check.warn(importable) 2024-07-09T19:01:56,075 /tmp/pip-build-env-abllg6kk/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules' is absent from the `packages` configuration. 2024-07-09T19:01:56,076 !! 2024-07-09T19:01:56,077 ******************************************************************************** 2024-07-09T19:01:56,078 ############################ 2024-07-09T19:01:56,078 # Package would be ignored # 2024-07-09T19:01:56,079 ############################ 2024-07-09T19:01:56,079 Python recognizes 'multiqc.modules' as an importable package[^1], 2024-07-09T19:01:56,080 but it is absent from setuptools' `packages` configuration. 2024-07-09T19:01:56,081 This leads to an ambiguous overall configuration. If you want to distribute this 2024-07-09T19:01:56,081 package, please make sure that 'multiqc.modules' is explicitly added 2024-07-09T19:01:56,082 to the `packages` configuration field. 2024-07-09T19:01:56,083 Alternatively, you can also rely on setuptools' discovery methods 2024-07-09T19:01:56,083 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-07-09T19:01:56,084 instead of `find_packages(...)`/`find:`). 2024-07-09T19:01:56,085 You can read more about "package discovery" on setuptools documentation page: 2024-07-09T19:01:56,086 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-07-09T19:01:56,087 If you don't want 'multiqc.modules' to be distributed and are 2024-07-09T19:01:56,087 already explicitly excluding 'multiqc.modules' via 2024-07-09T19:01:56,088 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-07-09T19:01:56,088 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-07-09T19:01:56,089 combination with a more fine grained `package-data` configuration. 2024-07-09T19:01:56,090 You can read more about "package data files" on setuptools documentation page: 2024-07-09T19:01:56,091 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-07-09T19:01:56,091 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-07-09T19:01:56,092 even if it does not contain any `.py` files. 2024-07-09T19:01:56,092 On the other hand, currently there is no concept of package data 2024-07-09T19:01:56,093 directory, all directories are treated like packages. 2024-07-09T19:01:56,093 ******************************************************************************** 2024-07-09T19:01:56,094 !! 2024-07-09T19:01:56,094 check.warn(importable) 2024-07-09T19:01:56,094 /tmp/pip-build-env-abllg6kk/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.adapterremoval' is absent from the `packages` configuration. 2024-07-09T19:01:56,095 !! 2024-07-09T19:01:56,095 ******************************************************************************** 2024-07-09T19:01:56,096 ############################ 2024-07-09T19:01:56,096 # Package would be ignored # 2024-07-09T19:01:56,096 ############################ 2024-07-09T19:01:56,097 Python recognizes 'multiqc.modules.adapterremoval' as an importable package[^1], 2024-07-09T19:01:56,097 but it is absent from setuptools' `packages` configuration. 2024-07-09T19:01:56,098 This leads to an ambiguous overall configuration. If you want to distribute this 2024-07-09T19:01:56,098 package, please make sure that 'multiqc.modules.adapterremoval' is explicitly added 2024-07-09T19:01:56,099 to the `packages` configuration field. 2024-07-09T19:01:56,100 Alternatively, you can also rely on setuptools' discovery methods 2024-07-09T19:01:56,100 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-07-09T19:01:56,101 instead of `find_packages(...)`/`find:`). 2024-07-09T19:01:56,102 You can read more about "package discovery" on setuptools documentation page: 2024-07-09T19:01:56,103 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-07-09T19:01:56,104 If you don't want 'multiqc.modules.adapterremoval' to be distributed and are 2024-07-09T19:01:56,104 already explicitly excluding 'multiqc.modules.adapterremoval' via 2024-07-09T19:01:56,105 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-07-09T19:01:56,105 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-07-09T19:01:56,106 combination with a more fine grained `package-data` configuration. 2024-07-09T19:01:56,107 You can read more about "package data files" on setuptools documentation page: 2024-07-09T19:01:56,108 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-07-09T19:01:56,109 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-07-09T19:01:56,109 even if it does not contain any `.py` files. 2024-07-09T19:01:56,110 On the other hand, currently there is no concept of package data 2024-07-09T19:01:56,110 directory, all directories are treated like packages. 2024-07-09T19:01:56,111 ******************************************************************************** 2024-07-09T19:01:56,112 !! 2024-07-09T19:01:56,112 check.warn(importable) 2024-07-09T19:01:56,113 /tmp/pip-build-env-abllg6kk/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.afterqc' is absent from the `packages` configuration. 2024-07-09T19:01:56,113 !! 2024-07-09T19:01:56,114 ******************************************************************************** 2024-07-09T19:01:56,115 ############################ 2024-07-09T19:01:56,116 # Package would be ignored # 2024-07-09T19:01:56,116 ############################ 2024-07-09T19:01:56,117 Python recognizes 'multiqc.modules.afterqc' as an importable package[^1], 2024-07-09T19:01:56,117 but it is absent from setuptools' `packages` configuration. 2024-07-09T19:01:56,118 This leads to an ambiguous overall configuration. If you want to distribute this 2024-07-09T19:01:56,118 package, please make sure that 'multiqc.modules.afterqc' is explicitly added 2024-07-09T19:01:56,118 to the `packages` configuration field. 2024-07-09T19:01:56,119 Alternatively, you can also rely on setuptools' discovery methods 2024-07-09T19:01:56,119 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-07-09T19:01:56,120 instead of `find_packages(...)`/`find:`). 2024-07-09T19:01:56,120 You can read more about "package discovery" on setuptools documentation page: 2024-07-09T19:01:56,121 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-07-09T19:01:56,122 If you don't want 'multiqc.modules.afterqc' to be distributed and are 2024-07-09T19:01:56,122 already explicitly excluding 'multiqc.modules.afterqc' via 2024-07-09T19:01:56,122 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-07-09T19:01:56,123 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-07-09T19:01:56,123 combination with a more fine grained `package-data` configuration. 2024-07-09T19:01:56,124 You can read more about "package data files" on setuptools documentation page: 2024-07-09T19:01:56,125 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-07-09T19:01:56,127 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-07-09T19:01:56,127 even if it does not contain any `.py` files. 2024-07-09T19:01:56,128 On the other hand, currently there is no concept of package data 2024-07-09T19:01:56,128 directory, all directories are treated like packages. 2024-07-09T19:01:56,129 ******************************************************************************** 2024-07-09T19:01:56,130 !! 2024-07-09T19:01:56,130 check.warn(importable) 2024-07-09T19:01:56,131 /tmp/pip-build-env-abllg6kk/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.anglerfish' is absent from the `packages` configuration. 2024-07-09T19:01:56,131 !! 2024-07-09T19:01:56,132 ******************************************************************************** 2024-07-09T19:01:56,133 ############################ 2024-07-09T19:01:56,133 # Package would be ignored # 2024-07-09T19:01:56,134 ############################ 2024-07-09T19:01:56,134 Python recognizes 'multiqc.modules.anglerfish' as an importable package[^1], 2024-07-09T19:01:56,135 but it is absent from setuptools' `packages` configuration. 2024-07-09T19:01:56,136 This leads to an ambiguous overall configuration. If you want to distribute this 2024-07-09T19:01:56,136 package, please make sure that 'multiqc.modules.anglerfish' is explicitly added 2024-07-09T19:01:56,137 to the `packages` configuration field. 2024-07-09T19:01:56,138 Alternatively, you can also rely on setuptools' discovery methods 2024-07-09T19:01:56,138 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-07-09T19:01:56,139 instead of `find_packages(...)`/`find:`). 2024-07-09T19:01:56,140 You can read more about "package discovery" on setuptools documentation page: 2024-07-09T19:01:56,141 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-07-09T19:01:56,142 If you don't want 'multiqc.modules.anglerfish' to be distributed and are 2024-07-09T19:01:56,143 already explicitly excluding 'multiqc.modules.anglerfish' via 2024-07-09T19:01:56,143 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-07-09T19:01:56,143 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-07-09T19:01:56,144 combination with a more fine grained `package-data` configuration. 2024-07-09T19:01:56,145 You can read more about "package data files" on setuptools documentation page: 2024-07-09T19:01:56,145 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-07-09T19:01:56,146 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-07-09T19:01:56,147 even if it does not contain any `.py` files. 2024-07-09T19:01:56,147 On the other hand, currently there is no concept of package data 2024-07-09T19:01:56,148 directory, all directories are treated like packages. 2024-07-09T19:01:56,148 ******************************************************************************** 2024-07-09T19:01:56,149 !! 2024-07-09T19:01:56,150 check.warn(importable) 2024-07-09T19:01:56,150 /tmp/pip-build-env-abllg6kk/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.bakta' is absent from the `packages` configuration. 2024-07-09T19:01:56,150 !! 2024-07-09T19:01:56,151 ******************************************************************************** 2024-07-09T19:01:56,151 ############################ 2024-07-09T19:01:56,152 # Package would be ignored # 2024-07-09T19:01:56,152 ############################ 2024-07-09T19:01:56,153 Python recognizes 'multiqc.modules.bakta' as an importable package[^1], 2024-07-09T19:01:56,153 but it is absent from setuptools' `packages` configuration. 2024-07-09T19:01:56,154 This leads to an ambiguous overall configuration. If you want to distribute this 2024-07-09T19:01:56,155 package, please make sure that 'multiqc.modules.bakta' is explicitly added 2024-07-09T19:01:56,155 to the `packages` configuration field. 2024-07-09T19:01:56,156 Alternatively, you can also rely on setuptools' discovery methods 2024-07-09T19:01:56,157 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-07-09T19:01:56,157 instead of `find_packages(...)`/`find:`). 2024-07-09T19:01:56,158 You can read more about "package discovery" on setuptools documentation page: 2024-07-09T19:01:56,160 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-07-09T19:01:56,161 If you don't want 'multiqc.modules.bakta' to be distributed and are 2024-07-09T19:01:56,161 already explicitly excluding 'multiqc.modules.bakta' via 2024-07-09T19:01:56,161 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-07-09T19:01:56,162 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-07-09T19:01:56,162 combination with a more fine grained `package-data` configuration. 2024-07-09T19:01:56,163 You can read more about "package data files" on setuptools documentation page: 2024-07-09T19:01:56,164 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-07-09T19:01:56,166 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-07-09T19:01:56,166 even if it does not contain any `.py` files. 2024-07-09T19:01:56,167 On the other hand, currently there is no concept of package data 2024-07-09T19:01:56,167 directory, all directories are treated like packages. 2024-07-09T19:01:56,168 ******************************************************************************** 2024-07-09T19:01:56,169 !! 2024-07-09T19:01:56,170 check.warn(importable) 2024-07-09T19:01:56,170 /tmp/pip-build-env-abllg6kk/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.bamdst' is absent from the `packages` configuration. 2024-07-09T19:01:56,170 !! 2024-07-09T19:01:56,171 ******************************************************************************** 2024-07-09T19:01:56,171 ############################ 2024-07-09T19:01:56,172 # Package would be ignored # 2024-07-09T19:01:56,172 ############################ 2024-07-09T19:01:56,172 Python recognizes 'multiqc.modules.bamdst' as an importable package[^1], 2024-07-09T19:01:56,173 but it is absent from setuptools' `packages` configuration. 2024-07-09T19:01:56,173 This leads to an ambiguous overall configuration. If you want to distribute this 2024-07-09T19:01:56,174 package, please make sure that 'multiqc.modules.bamdst' is explicitly added 2024-07-09T19:01:56,174 to the `packages` configuration field. 2024-07-09T19:01:56,175 Alternatively, you can also rely on setuptools' discovery methods 2024-07-09T19:01:56,175 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-07-09T19:01:56,176 instead of `find_packages(...)`/`find:`). 2024-07-09T19:01:56,177 You can read more about "package discovery" on setuptools documentation page: 2024-07-09T19:01:56,177 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-07-09T19:01:56,178 If you don't want 'multiqc.modules.bamdst' to be distributed and are 2024-07-09T19:01:56,178 already explicitly excluding 'multiqc.modules.bamdst' via 2024-07-09T19:01:56,179 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-07-09T19:01:56,179 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-07-09T19:01:56,180 combination with a more fine grained `package-data` configuration. 2024-07-09T19:01:56,181 You can read more about "package data files" on setuptools documentation page: 2024-07-09T19:01:56,182 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-07-09T19:01:56,183 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-07-09T19:01:56,184 even if it does not contain any `.py` files. 2024-07-09T19:01:56,184 On the other hand, currently there is no concept of package data 2024-07-09T19:01:56,185 directory, all directories are treated like packages. 2024-07-09T19:01:56,186 ******************************************************************************** 2024-07-09T19:01:56,187 !! 2024-07-09T19:01:56,187 check.warn(importable) 2024-07-09T19:01:56,188 /tmp/pip-build-env-abllg6kk/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.bamtools' is absent from the `packages` configuration. 2024-07-09T19:01:56,188 !! 2024-07-09T19:01:56,189 ******************************************************************************** 2024-07-09T19:01:56,189 ############################ 2024-07-09T19:01:56,190 # Package would be ignored # 2024-07-09T19:01:56,190 ############################ 2024-07-09T19:01:56,191 Python recognizes 'multiqc.modules.bamtools' as an importable package[^1], 2024-07-09T19:01:56,191 but it is absent from setuptools' `packages` configuration. 2024-07-09T19:01:56,192 This leads to an ambiguous overall configuration. If you want to distribute this 2024-07-09T19:01:56,193 package, please make sure that 'multiqc.modules.bamtools' is explicitly added 2024-07-09T19:01:56,193 to the `packages` configuration field. 2024-07-09T19:01:56,194 Alternatively, you can also rely on setuptools' discovery methods 2024-07-09T19:01:56,195 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-07-09T19:01:56,196 instead of `find_packages(...)`/`find:`). 2024-07-09T19:01:56,196 You can read more about "package discovery" on setuptools documentation page: 2024-07-09T19:01:56,197 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-07-09T19:01:56,198 If you don't want 'multiqc.modules.bamtools' to be distributed and are 2024-07-09T19:01:56,198 already explicitly excluding 'multiqc.modules.bamtools' via 2024-07-09T19:01:56,198 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-07-09T19:01:56,199 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-07-09T19:01:56,199 combination with a more fine grained `package-data` configuration. 2024-07-09T19:01:56,200 You can read more about "package data files" on setuptools documentation page: 2024-07-09T19:01:56,200 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-07-09T19:01:56,201 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-07-09T19:01:56,202 even if it does not contain any `.py` files. 2024-07-09T19:01:56,202 On the other hand, currently there is no concept of package data 2024-07-09T19:01:56,202 directory, all directories are treated like packages. 2024-07-09T19:01:56,203 ******************************************************************************** 2024-07-09T19:01:56,204 !! 2024-07-09T19:01:56,204 check.warn(importable) 2024-07-09T19:01:56,204 /tmp/pip-build-env-abllg6kk/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.bbduk' is absent from the `packages` configuration. 2024-07-09T19:01:56,205 !! 2024-07-09T19:01:56,206 ******************************************************************************** 2024-07-09T19:01:56,206 ############################ 2024-07-09T19:01:56,207 # Package would be ignored # 2024-07-09T19:01:56,207 ############################ 2024-07-09T19:01:56,208 Python recognizes 'multiqc.modules.bbduk' as an importable package[^1], 2024-07-09T19:01:56,208 but it is absent from setuptools' `packages` configuration. 2024-07-09T19:01:56,209 This leads to an ambiguous overall configuration. If you want to distribute this 2024-07-09T19:01:56,210 package, please make sure that 'multiqc.modules.bbduk' is explicitly added 2024-07-09T19:01:56,211 to the `packages` configuration field. 2024-07-09T19:01:56,212 Alternatively, you can also rely on setuptools' discovery methods 2024-07-09T19:01:56,212 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-07-09T19:01:56,212 instead of `find_packages(...)`/`find:`). 2024-07-09T19:01:56,213 You can read more about "package discovery" on setuptools documentation page: 2024-07-09T19:01:56,214 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-07-09T19:01:56,215 If you don't want 'multiqc.modules.bbduk' to be distributed and are 2024-07-09T19:01:56,216 already explicitly excluding 'multiqc.modules.bbduk' via 2024-07-09T19:01:56,216 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-07-09T19:01:56,216 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-07-09T19:01:56,217 combination with a more fine grained `package-data` configuration. 2024-07-09T19:01:56,218 You can read more about "package data files" on setuptools documentation page: 2024-07-09T19:01:56,219 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-07-09T19:01:56,221 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-07-09T19:01:56,222 even if it does not contain any `.py` files. 2024-07-09T19:01:56,222 On the other hand, currently there is no concept of package data 2024-07-09T19:01:56,223 directory, all directories are treated like packages. 2024-07-09T19:01:56,223 ******************************************************************************** 2024-07-09T19:01:56,224 !! 2024-07-09T19:01:56,224 check.warn(importable) 2024-07-09T19:01:56,224 /tmp/pip-build-env-abllg6kk/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.bbmap' is absent from the `packages` configuration. 2024-07-09T19:01:56,225 !! 2024-07-09T19:01:56,225 ******************************************************************************** 2024-07-09T19:01:56,226 ############################ 2024-07-09T19:01:56,226 # Package would be ignored # 2024-07-09T19:01:56,226 ############################ 2024-07-09T19:01:56,227 Python recognizes 'multiqc.modules.bbmap' as an importable package[^1], 2024-07-09T19:01:56,227 but it is absent from setuptools' `packages` configuration. 2024-07-09T19:01:56,228 This leads to an ambiguous overall configuration. If you want to distribute this 2024-07-09T19:01:56,228 package, please make sure that 'multiqc.modules.bbmap' is explicitly added 2024-07-09T19:01:56,229 to the `packages` configuration field. 2024-07-09T19:01:56,229 Alternatively, you can also rely on setuptools' discovery methods 2024-07-09T19:01:56,230 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-07-09T19:01:56,230 instead of `find_packages(...)`/`find:`). 2024-07-09T19:01:56,231 You can read more about "package discovery" on setuptools documentation page: 2024-07-09T19:01:56,232 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-07-09T19:01:56,233 If you don't want 'multiqc.modules.bbmap' to be distributed and are 2024-07-09T19:01:56,233 already explicitly excluding 'multiqc.modules.bbmap' via 2024-07-09T19:01:56,234 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-07-09T19:01:56,235 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-07-09T19:01:56,235 combination with a more fine grained `package-data` configuration. 2024-07-09T19:01:56,236 You can read more about "package data files" on setuptools documentation page: 2024-07-09T19:01:56,237 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-07-09T19:01:56,239 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-07-09T19:01:56,239 even if it does not contain any `.py` files. 2024-07-09T19:01:56,240 On the other hand, currently there is no concept of package data 2024-07-09T19:01:56,240 directory, all directories are treated like packages. 2024-07-09T19:01:56,241 ******************************************************************************** 2024-07-09T19:01:56,242 !! 2024-07-09T19:01:56,242 check.warn(importable) 2024-07-09T19:01:56,243 /tmp/pip-build-env-abllg6kk/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.bcftools' is absent from the `packages` configuration. 2024-07-09T19:01:56,243 !! 2024-07-09T19:01:56,244 ******************************************************************************** 2024-07-09T19:01:56,245 ############################ 2024-07-09T19:01:56,245 # Package would be ignored # 2024-07-09T19:01:56,246 ############################ 2024-07-09T19:01:56,246 Python recognizes 'multiqc.modules.bcftools' as an importable package[^1], 2024-07-09T19:01:56,247 but it is absent from setuptools' `packages` configuration. 2024-07-09T19:01:56,248 This leads to an ambiguous overall configuration. If you want to distribute this 2024-07-09T19:01:56,248 package, please make sure that 'multiqc.modules.bcftools' is explicitly added 2024-07-09T19:01:56,249 to the `packages` configuration field. 2024-07-09T19:01:56,249 Alternatively, you can also rely on setuptools' discovery methods 2024-07-09T19:01:56,250 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-07-09T19:01:56,250 instead of `find_packages(...)`/`find:`). 2024-07-09T19:01:56,250 You can read more about "package discovery" on setuptools documentation page: 2024-07-09T19:01:56,251 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-07-09T19:01:56,252 If you don't want 'multiqc.modules.bcftools' to be distributed and are 2024-07-09T19:01:56,252 already explicitly excluding 'multiqc.modules.bcftools' via 2024-07-09T19:01:56,252 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-07-09T19:01:56,253 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-07-09T19:01:56,253 combination with a more fine grained `package-data` configuration. 2024-07-09T19:01:56,254 You can read more about "package data files" on setuptools documentation page: 2024-07-09T19:01:56,255 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-07-09T19:01:56,256 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-07-09T19:01:56,256 even if it does not contain any `.py` files. 2024-07-09T19:01:56,256 On the other hand, currently there is no concept of package data 2024-07-09T19:01:56,257 directory, all directories are treated like packages. 2024-07-09T19:01:56,257 ******************************************************************************** 2024-07-09T19:01:56,258 !! 2024-07-09T19:01:56,259 check.warn(importable) 2024-07-09T19:01:56,260 /tmp/pip-build-env-abllg6kk/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.bcl2fastq' is absent from the `packages` configuration. 2024-07-09T19:01:56,260 !! 2024-07-09T19:01:56,261 ******************************************************************************** 2024-07-09T19:01:56,262 ############################ 2024-07-09T19:01:56,262 # Package would be ignored # 2024-07-09T19:01:56,263 ############################ 2024-07-09T19:01:56,263 Python recognizes 'multiqc.modules.bcl2fastq' as an importable package[^1], 2024-07-09T19:01:56,264 but it is absent from setuptools' `packages` configuration. 2024-07-09T19:01:56,265 This leads to an ambiguous overall configuration. If you want to distribute this 2024-07-09T19:01:56,265 package, please make sure that 'multiqc.modules.bcl2fastq' is explicitly added 2024-07-09T19:01:56,265 to the `packages` configuration field. 2024-07-09T19:01:56,266 Alternatively, you can also rely on setuptools' discovery methods 2024-07-09T19:01:56,267 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-07-09T19:01:56,267 instead of `find_packages(...)`/`find:`). 2024-07-09T19:01:56,268 You can read more about "package discovery" on setuptools documentation page: 2024-07-09T19:01:56,269 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-07-09T19:01:56,270 If you don't want 'multiqc.modules.bcl2fastq' to be distributed and are 2024-07-09T19:01:56,271 already explicitly excluding 'multiqc.modules.bcl2fastq' via 2024-07-09T19:01:56,271 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-07-09T19:01:56,272 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-07-09T19:01:56,272 combination with a more fine grained `package-data` configuration. 2024-07-09T19:01:56,273 You can read more about "package data files" on setuptools documentation page: 2024-07-09T19:01:56,274 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-07-09T19:01:56,275 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-07-09T19:01:56,275 even if it does not contain any `.py` files. 2024-07-09T19:01:56,276 On the other hand, currently there is no concept of package data 2024-07-09T19:01:56,276 directory, all directories are treated like packages. 2024-07-09T19:01:56,276 ******************************************************************************** 2024-07-09T19:01:56,277 !! 2024-07-09T19:01:56,278 check.warn(importable) 2024-07-09T19:01:56,278 /tmp/pip-build-env-abllg6kk/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.bclconvert' is absent from the `packages` configuration. 2024-07-09T19:01:56,278 !! 2024-07-09T19:01:56,279 ******************************************************************************** 2024-07-09T19:01:56,279 ############################ 2024-07-09T19:01:56,280 # Package would be ignored # 2024-07-09T19:01:56,280 ############################ 2024-07-09T19:01:56,280 Python recognizes 'multiqc.modules.bclconvert' as an importable package[^1], 2024-07-09T19:01:56,281 but it is absent from setuptools' `packages` configuration. 2024-07-09T19:01:56,282 This leads to an ambiguous overall configuration. If you want to distribute this 2024-07-09T19:01:56,282 package, please make sure that 'multiqc.modules.bclconvert' is explicitly added 2024-07-09T19:01:56,282 to the `packages` configuration field. 2024-07-09T19:01:56,283 Alternatively, you can also rely on setuptools' discovery methods 2024-07-09T19:01:56,284 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-07-09T19:01:56,284 instead of `find_packages(...)`/`find:`). 2024-07-09T19:01:56,286 You can read more about "package discovery" on setuptools documentation page: 2024-07-09T19:01:56,287 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-07-09T19:01:56,288 If you don't want 'multiqc.modules.bclconvert' to be distributed and are 2024-07-09T19:01:56,288 already explicitly excluding 'multiqc.modules.bclconvert' via 2024-07-09T19:01:56,289 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-07-09T19:01:56,290 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-07-09T19:01:56,290 combination with a more fine grained `package-data` configuration. 2024-07-09T19:01:56,291 You can read more about "package data files" on setuptools documentation page: 2024-07-09T19:01:56,293 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-07-09T19:01:56,294 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-07-09T19:01:56,294 even if it does not contain any `.py` files. 2024-07-09T19:01:56,295 On the other hand, currently there is no concept of package data 2024-07-09T19:01:56,296 directory, all directories are treated like packages. 2024-07-09T19:01:56,296 ******************************************************************************** 2024-07-09T19:01:56,297 !! 2024-07-09T19:01:56,298 check.warn(importable) 2024-07-09T19:01:56,298 /tmp/pip-build-env-abllg6kk/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.biobambam2' is absent from the `packages` configuration. 2024-07-09T19:01:56,299 !! 2024-07-09T19:01:56,300 ******************************************************************************** 2024-07-09T19:01:56,300 ############################ 2024-07-09T19:01:56,300 # Package would be ignored # 2024-07-09T19:01:56,301 ############################ 2024-07-09T19:01:56,301 Python recognizes 'multiqc.modules.biobambam2' as an importable package[^1], 2024-07-09T19:01:56,301 but it is absent from setuptools' `packages` configuration. 2024-07-09T19:01:56,302 This leads to an ambiguous overall configuration. If you want to distribute this 2024-07-09T19:01:56,302 package, please make sure that 'multiqc.modules.biobambam2' is explicitly added 2024-07-09T19:01:56,303 to the `packages` configuration field. 2024-07-09T19:01:56,304 Alternatively, you can also rely on setuptools' discovery methods 2024-07-09T19:01:56,304 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-07-09T19:01:56,304 instead of `find_packages(...)`/`find:`). 2024-07-09T19:01:56,305 You can read more about "package discovery" on setuptools documentation page: 2024-07-09T19:01:56,306 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-07-09T19:01:56,306 If you don't want 'multiqc.modules.biobambam2' to be distributed and are 2024-07-09T19:01:56,307 already explicitly excluding 'multiqc.modules.biobambam2' via 2024-07-09T19:01:56,307 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-07-09T19:01:56,307 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-07-09T19:01:56,308 combination with a more fine grained `package-data` configuration. 2024-07-09T19:01:56,309 You can read more about "package data files" on setuptools documentation page: 2024-07-09T19:01:56,310 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-07-09T19:01:56,312 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-07-09T19:01:56,312 even if it does not contain any `.py` files. 2024-07-09T19:01:56,312 On the other hand, currently there is no concept of package data 2024-07-09T19:01:56,313 directory, all directories are treated like packages. 2024-07-09T19:01:56,314 ******************************************************************************** 2024-07-09T19:01:56,315 !! 2024-07-09T19:01:56,315 check.warn(importable) 2024-07-09T19:01:56,316 /tmp/pip-build-env-abllg6kk/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.biobloomtools' is absent from the `packages` configuration. 2024-07-09T19:01:56,316 !! 2024-07-09T19:01:56,317 ******************************************************************************** 2024-07-09T19:01:56,318 ############################ 2024-07-09T19:01:56,318 # Package would be ignored # 2024-07-09T19:01:56,319 ############################ 2024-07-09T19:01:56,319 Python recognizes 'multiqc.modules.biobloomtools' as an importable package[^1], 2024-07-09T19:01:56,319 but it is absent from setuptools' `packages` configuration. 2024-07-09T19:01:56,320 This leads to an ambiguous overall configuration. If you want to distribute this 2024-07-09T19:01:56,321 package, please make sure that 'multiqc.modules.biobloomtools' is explicitly added 2024-07-09T19:01:56,321 to the `packages` configuration field. 2024-07-09T19:01:56,322 Alternatively, you can also rely on setuptools' discovery methods 2024-07-09T19:01:56,323 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-07-09T19:01:56,323 instead of `find_packages(...)`/`find:`). 2024-07-09T19:01:56,325 You can read more about "package discovery" on setuptools documentation page: 2024-07-09T19:01:56,326 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-07-09T19:01:56,327 If you don't want 'multiqc.modules.biobloomtools' to be distributed and are 2024-07-09T19:01:56,327 already explicitly excluding 'multiqc.modules.biobloomtools' via 2024-07-09T19:01:56,327 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-07-09T19:01:56,328 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-07-09T19:01:56,328 combination with a more fine grained `package-data` configuration. 2024-07-09T19:01:56,329 You can read more about "package data files" on setuptools documentation page: 2024-07-09T19:01:56,329 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-07-09T19:01:56,330 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-07-09T19:01:56,331 even if it does not contain any `.py` files. 2024-07-09T19:01:56,331 On the other hand, currently there is no concept of package data 2024-07-09T19:01:56,331 directory, all directories are treated like packages. 2024-07-09T19:01:56,332 ******************************************************************************** 2024-07-09T19:01:56,333 !! 2024-07-09T19:01:56,333 check.warn(importable) 2024-07-09T19:01:56,333 /tmp/pip-build-env-abllg6kk/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.biscuit' is absent from the `packages` configuration. 2024-07-09T19:01:56,334 !! 2024-07-09T19:01:56,334 ******************************************************************************** 2024-07-09T19:01:56,335 ############################ 2024-07-09T19:01:56,335 # Package would be ignored # 2024-07-09T19:01:56,336 ############################ 2024-07-09T19:01:56,337 Python recognizes 'multiqc.modules.biscuit' as an importable package[^1], 2024-07-09T19:01:56,337 but it is absent from setuptools' `packages` configuration. 2024-07-09T19:01:56,338 This leads to an ambiguous overall configuration. If you want to distribute this 2024-07-09T19:01:56,339 package, please make sure that 'multiqc.modules.biscuit' is explicitly added 2024-07-09T19:01:56,339 to the `packages` configuration field. 2024-07-09T19:01:56,340 Alternatively, you can also rely on setuptools' discovery methods 2024-07-09T19:01:56,341 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-07-09T19:01:56,341 instead of `find_packages(...)`/`find:`). 2024-07-09T19:01:56,342 You can read more about "package discovery" on setuptools documentation page: 2024-07-09T19:01:56,343 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-07-09T19:01:56,344 If you don't want 'multiqc.modules.biscuit' to be distributed and are 2024-07-09T19:01:56,345 already explicitly excluding 'multiqc.modules.biscuit' via 2024-07-09T19:01:56,345 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-07-09T19:01:56,346 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-07-09T19:01:56,346 combination with a more fine grained `package-data` configuration. 2024-07-09T19:01:56,347 You can read more about "package data files" on setuptools documentation page: 2024-07-09T19:01:56,348 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-07-09T19:01:56,350 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-07-09T19:01:56,350 even if it does not contain any `.py` files. 2024-07-09T19:01:56,351 On the other hand, currently there is no concept of package data 2024-07-09T19:01:56,351 directory, all directories are treated like packages. 2024-07-09T19:01:56,352 ******************************************************************************** 2024-07-09T19:01:56,353 !! 2024-07-09T19:01:56,353 check.warn(importable) 2024-07-09T19:01:56,353 /tmp/pip-build-env-abllg6kk/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.bismark' is absent from the `packages` configuration. 2024-07-09T19:01:56,353 !! 2024-07-09T19:01:56,354 ******************************************************************************** 2024-07-09T19:01:56,354 ############################ 2024-07-09T19:01:56,355 # Package would be ignored # 2024-07-09T19:01:56,355 ############################ 2024-07-09T19:01:56,356 Python recognizes 'multiqc.modules.bismark' as an importable package[^1], 2024-07-09T19:01:56,356 but it is absent from setuptools' `packages` configuration. 2024-07-09T19:01:56,357 This leads to an ambiguous overall configuration. If you want to distribute this 2024-07-09T19:01:56,357 package, please make sure that 'multiqc.modules.bismark' is explicitly added 2024-07-09T19:01:56,357 to the `packages` configuration field. 2024-07-09T19:01:56,358 Alternatively, you can also rely on setuptools' discovery methods 2024-07-09T19:01:56,358 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-07-09T19:01:56,359 instead of `find_packages(...)`/`find:`). 2024-07-09T19:01:56,360 You can read more about "package discovery" on setuptools documentation page: 2024-07-09T19:01:56,360 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-07-09T19:01:56,361 If you don't want 'multiqc.modules.bismark' to be distributed and are 2024-07-09T19:01:56,362 already explicitly excluding 'multiqc.modules.bismark' via 2024-07-09T19:01:56,362 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-07-09T19:01:56,363 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-07-09T19:01:56,364 combination with a more fine grained `package-data` configuration. 2024-07-09T19:01:56,365 You can read more about "package data files" on setuptools documentation page: 2024-07-09T19:01:56,366 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-07-09T19:01:56,368 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-07-09T19:01:56,368 even if it does not contain any `.py` files. 2024-07-09T19:01:56,369 On the other hand, currently there is no concept of package data 2024-07-09T19:01:56,370 directory, all directories are treated like packages. 2024-07-09T19:01:56,370 ******************************************************************************** 2024-07-09T19:01:56,371 !! 2024-07-09T19:01:56,371 check.warn(importable) 2024-07-09T19:01:56,372 /tmp/pip-build-env-abllg6kk/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.bowtie1' is absent from the `packages` configuration. 2024-07-09T19:01:56,372 !! 2024-07-09T19:01:56,373 ******************************************************************************** 2024-07-09T19:01:56,374 ############################ 2024-07-09T19:01:56,374 # Package would be ignored # 2024-07-09T19:01:56,375 ############################ 2024-07-09T19:01:56,376 Python recognizes 'multiqc.modules.bowtie1' as an importable package[^1], 2024-07-09T19:01:56,376 but it is absent from setuptools' `packages` configuration. 2024-07-09T19:01:56,377 This leads to an ambiguous overall configuration. If you want to distribute this 2024-07-09T19:01:56,378 package, please make sure that 'multiqc.modules.bowtie1' is explicitly added 2024-07-09T19:01:56,378 to the `packages` configuration field. 2024-07-09T19:01:56,379 Alternatively, you can also rely on setuptools' discovery methods 2024-07-09T19:01:56,379 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-07-09T19:01:56,380 instead of `find_packages(...)`/`find:`). 2024-07-09T19:01:56,380 You can read more about "package discovery" on setuptools documentation page: 2024-07-09T19:01:56,381 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-07-09T19:01:56,382 If you don't want 'multiqc.modules.bowtie1' to be distributed and are 2024-07-09T19:01:56,382 already explicitly excluding 'multiqc.modules.bowtie1' via 2024-07-09T19:01:56,382 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-07-09T19:01:56,383 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-07-09T19:01:56,383 combination with a more fine grained `package-data` configuration. 2024-07-09T19:01:56,384 You can read more about "package data files" on setuptools documentation page: 2024-07-09T19:01:56,385 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-07-09T19:01:56,386 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-07-09T19:01:56,386 even if it does not contain any `.py` files. 2024-07-09T19:01:56,386 On the other hand, currently there is no concept of package data 2024-07-09T19:01:56,387 directory, all directories are treated like packages. 2024-07-09T19:01:56,387 ******************************************************************************** 2024-07-09T19:01:56,388 !! 2024-07-09T19:01:56,389 check.warn(importable) 2024-07-09T19:01:56,389 /tmp/pip-build-env-abllg6kk/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.bowtie2' is absent from the `packages` configuration. 2024-07-09T19:01:56,390 !! 2024-07-09T19:01:56,391 ******************************************************************************** 2024-07-09T19:01:56,391 ############################ 2024-07-09T19:01:56,392 # Package would be ignored # 2024-07-09T19:01:56,393 ############################ 2024-07-09T19:01:56,393 Python recognizes 'multiqc.modules.bowtie2' as an importable package[^1], 2024-07-09T19:01:56,393 but it is absent from setuptools' `packages` configuration. 2024-07-09T19:01:56,394 This leads to an ambiguous overall configuration. If you want to distribute this 2024-07-09T19:01:56,395 package, please make sure that 'multiqc.modules.bowtie2' is explicitly added 2024-07-09T19:01:56,396 to the `packages` configuration field. 2024-07-09T19:01:56,397 Alternatively, you can also rely on setuptools' discovery methods 2024-07-09T19:01:56,397 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-07-09T19:01:56,397 instead of `find_packages(...)`/`find:`). 2024-07-09T19:01:56,398 You can read more about "package discovery" on setuptools documentation page: 2024-07-09T19:01:56,399 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-07-09T19:01:56,400 If you don't want 'multiqc.modules.bowtie2' to be distributed and are 2024-07-09T19:01:56,401 already explicitly excluding 'multiqc.modules.bowtie2' via 2024-07-09T19:01:56,401 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-07-09T19:01:56,402 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-07-09T19:01:56,402 combination with a more fine grained `package-data` configuration. 2024-07-09T19:01:56,403 You can read more about "package data files" on setuptools documentation page: 2024-07-09T19:01:56,405 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-07-09T19:01:56,406 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-07-09T19:01:56,406 even if it does not contain any `.py` files. 2024-07-09T19:01:56,406 On the other hand, currently there is no concept of package data 2024-07-09T19:01:56,407 directory, all directories are treated like packages. 2024-07-09T19:01:56,407 ******************************************************************************** 2024-07-09T19:01:56,408 !! 2024-07-09T19:01:56,408 check.warn(importable) 2024-07-09T19:01:56,409 /tmp/pip-build-env-abllg6kk/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.bracken' is absent from the `packages` configuration. 2024-07-09T19:01:56,409 !! 2024-07-09T19:01:56,410 ******************************************************************************** 2024-07-09T19:01:56,410 ############################ 2024-07-09T19:01:56,410 # Package would be ignored # 2024-07-09T19:01:56,411 ############################ 2024-07-09T19:01:56,411 Python recognizes 'multiqc.modules.bracken' as an importable package[^1], 2024-07-09T19:01:56,412 but it is absent from setuptools' `packages` configuration. 2024-07-09T19:01:56,412 This leads to an ambiguous overall configuration. If you want to distribute this 2024-07-09T19:01:56,413 package, please make sure that 'multiqc.modules.bracken' is explicitly added 2024-07-09T19:01:56,413 to the `packages` configuration field. 2024-07-09T19:01:56,414 Alternatively, you can also rely on setuptools' discovery methods 2024-07-09T19:01:56,415 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-07-09T19:01:56,415 instead of `find_packages(...)`/`find:`). 2024-07-09T19:01:56,416 You can read more about "package discovery" on setuptools documentation page: 2024-07-09T19:01:56,417 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-07-09T19:01:56,419 If you don't want 'multiqc.modules.bracken' to be distributed and are 2024-07-09T19:01:56,419 already explicitly excluding 'multiqc.modules.bracken' via 2024-07-09T19:01:56,420 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-07-09T19:01:56,420 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-07-09T19:01:56,421 combination with a more fine grained `package-data` configuration. 2024-07-09T19:01:56,422 You can read more about "package data files" on setuptools documentation page: 2024-07-09T19:01:56,423 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-07-09T19:01:56,424 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-07-09T19:01:56,425 even if it does not contain any `.py` files. 2024-07-09T19:01:56,425 On the other hand, currently there is no concept of package data 2024-07-09T19:01:56,426 directory, all directories are treated like packages. 2024-07-09T19:01:56,426 ******************************************************************************** 2024-07-09T19:01:56,427 !! 2024-07-09T19:01:56,427 check.warn(importable) 2024-07-09T19:01:56,428 /tmp/pip-build-env-abllg6kk/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.busco' is absent from the `packages` configuration. 2024-07-09T19:01:56,429 !! 2024-07-09T19:01:56,430 ******************************************************************************** 2024-07-09T19:01:56,430 ############################ 2024-07-09T19:01:56,431 # Package would be ignored # 2024-07-09T19:01:56,431 ############################ 2024-07-09T19:01:56,432 Python recognizes 'multiqc.modules.busco' as an importable package[^1], 2024-07-09T19:01:56,432 but it is absent from setuptools' `packages` configuration. 2024-07-09T19:01:56,433 This leads to an ambiguous overall configuration. If you want to distribute this 2024-07-09T19:01:56,433 package, please make sure that 'multiqc.modules.busco' is explicitly added 2024-07-09T19:01:56,434 to the `packages` configuration field. 2024-07-09T19:01:56,434 Alternatively, you can also rely on setuptools' discovery methods 2024-07-09T19:01:56,435 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-07-09T19:01:56,435 instead of `find_packages(...)`/`find:`). 2024-07-09T19:01:56,436 You can read more about "package discovery" on setuptools documentation page: 2024-07-09T19:01:56,437 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-07-09T19:01:56,438 If you don't want 'multiqc.modules.busco' to be distributed and are 2024-07-09T19:01:56,438 already explicitly excluding 'multiqc.modules.busco' via 2024-07-09T19:01:56,439 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-07-09T19:01:56,439 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-07-09T19:01:56,439 combination with a more fine grained `package-data` configuration. 2024-07-09T19:01:56,440 You can read more about "package data files" on setuptools documentation page: 2024-07-09T19:01:56,441 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-07-09T19:01:56,442 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-07-09T19:01:56,443 even if it does not contain any `.py` files. 2024-07-09T19:01:56,443 On the other hand, currently there is no concept of package data 2024-07-09T19:01:56,444 directory, all directories are treated like packages. 2024-07-09T19:01:56,444 ******************************************************************************** 2024-07-09T19:01:56,446 !! 2024-07-09T19:01:56,446 check.warn(importable) 2024-07-09T19:01:56,447 /tmp/pip-build-env-abllg6kk/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.bustools' is absent from the `packages` configuration. 2024-07-09T19:01:56,447 !! 2024-07-09T19:01:56,448 ******************************************************************************** 2024-07-09T19:01:56,448 ############################ 2024-07-09T19:01:56,449 # Package would be ignored # 2024-07-09T19:01:56,449 ############################ 2024-07-09T19:01:56,450 Python recognizes 'multiqc.modules.bustools' as an importable package[^1], 2024-07-09T19:01:56,450 but it is absent from setuptools' `packages` configuration. 2024-07-09T19:01:56,451 This leads to an ambiguous overall configuration. If you want to distribute this 2024-07-09T19:01:56,452 package, please make sure that 'multiqc.modules.bustools' is explicitly added 2024-07-09T19:01:56,452 to the `packages` configuration field. 2024-07-09T19:01:56,453 Alternatively, you can also rely on setuptools' discovery methods 2024-07-09T19:01:56,453 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-07-09T19:01:56,454 instead of `find_packages(...)`/`find:`). 2024-07-09T19:01:56,455 You can read more about "package discovery" on setuptools documentation page: 2024-07-09T19:01:56,456 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-07-09T19:01:56,457 If you don't want 'multiqc.modules.bustools' to be distributed and are 2024-07-09T19:01:56,458 already explicitly excluding 'multiqc.modules.bustools' via 2024-07-09T19:01:56,458 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-07-09T19:01:56,459 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-07-09T19:01:56,459 combination with a more fine grained `package-data` configuration. 2024-07-09T19:01:56,460 You can read more about "package data files" on setuptools documentation page: 2024-07-09T19:01:56,461 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-07-09T19:01:56,462 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-07-09T19:01:56,462 even if it does not contain any `.py` files. 2024-07-09T19:01:56,463 On the other hand, currently there is no concept of package data 2024-07-09T19:01:56,463 directory, all directories are treated like packages. 2024-07-09T19:01:56,463 ******************************************************************************** 2024-07-09T19:01:56,464 !! 2024-07-09T19:01:56,465 check.warn(importable) 2024-07-09T19:01:56,465 /tmp/pip-build-env-abllg6kk/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.ccs' is absent from the `packages` configuration. 2024-07-09T19:01:56,465 !! 2024-07-09T19:01:56,466 ******************************************************************************** 2024-07-09T19:01:56,466 ############################ 2024-07-09T19:01:56,467 # Package would be ignored # 2024-07-09T19:01:56,467 ############################ 2024-07-09T19:01:56,468 Python recognizes 'multiqc.modules.ccs' as an importable package[^1], 2024-07-09T19:01:56,468 but it is absent from setuptools' `packages` configuration. 2024-07-09T19:01:56,469 This leads to an ambiguous overall configuration. If you want to distribute this 2024-07-09T19:01:56,470 package, please make sure that 'multiqc.modules.ccs' is explicitly added 2024-07-09T19:01:56,470 to the `packages` configuration field. 2024-07-09T19:01:56,471 Alternatively, you can also rely on setuptools' discovery methods 2024-07-09T19:01:56,472 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-07-09T19:01:56,473 instead of `find_packages(...)`/`find:`). 2024-07-09T19:01:56,474 You can read more about "package discovery" on setuptools documentation page: 2024-07-09T19:01:56,475 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-07-09T19:01:56,476 If you don't want 'multiqc.modules.ccs' to be distributed and are 2024-07-09T19:01:56,477 already explicitly excluding 'multiqc.modules.ccs' via 2024-07-09T19:01:56,477 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-07-09T19:01:56,478 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-07-09T19:01:56,478 combination with a more fine grained `package-data` configuration. 2024-07-09T19:01:56,479 You can read more about "package data files" on setuptools documentation page: 2024-07-09T19:01:56,480 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-07-09T19:01:56,482 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-07-09T19:01:56,482 even if it does not contain any `.py` files. 2024-07-09T19:01:56,483 On the other hand, currently there is no concept of package data 2024-07-09T19:01:56,483 directory, all directories are treated like packages. 2024-07-09T19:01:56,484 ******************************************************************************** 2024-07-09T19:01:56,485 !! 2024-07-09T19:01:56,485 check.warn(importable) 2024-07-09T19:01:56,486 /tmp/pip-build-env-abllg6kk/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.ccs.tests' is absent from the `packages` configuration. 2024-07-09T19:01:56,486 !! 2024-07-09T19:01:56,487 ******************************************************************************** 2024-07-09T19:01:56,488 ############################ 2024-07-09T19:01:56,488 # Package would be ignored # 2024-07-09T19:01:56,488 ############################ 2024-07-09T19:01:56,489 Python recognizes 'multiqc.modules.ccs.tests' as an importable package[^1], 2024-07-09T19:01:56,489 but it is absent from setuptools' `packages` configuration. 2024-07-09T19:01:56,490 This leads to an ambiguous overall configuration. If you want to distribute this 2024-07-09T19:01:56,490 package, please make sure that 'multiqc.modules.ccs.tests' is explicitly added 2024-07-09T19:01:56,490 to the `packages` configuration field. 2024-07-09T19:01:56,491 Alternatively, you can also rely on setuptools' discovery methods 2024-07-09T19:01:56,492 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-07-09T19:01:56,492 instead of `find_packages(...)`/`find:`). 2024-07-09T19:01:56,493 You can read more about "package discovery" on setuptools documentation page: 2024-07-09T19:01:56,493 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-07-09T19:01:56,494 If you don't want 'multiqc.modules.ccs.tests' to be distributed and are 2024-07-09T19:01:56,494 already explicitly excluding 'multiqc.modules.ccs.tests' via 2024-07-09T19:01:56,495 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-07-09T19:01:56,495 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-07-09T19:01:56,496 combination with a more fine grained `package-data` configuration. 2024-07-09T19:01:56,497 You can read more about "package data files" on setuptools documentation page: 2024-07-09T19:01:56,498 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-07-09T19:01:56,500 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-07-09T19:01:56,500 even if it does not contain any `.py` files. 2024-07-09T19:01:56,501 On the other hand, currently there is no concept of package data 2024-07-09T19:01:56,501 directory, all directories are treated like packages. 2024-07-09T19:01:56,502 ******************************************************************************** 2024-07-09T19:01:56,503 !! 2024-07-09T19:01:56,503 check.warn(importable) 2024-07-09T19:01:56,504 /tmp/pip-build-env-abllg6kk/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.cellranger' is absent from the `packages` configuration. 2024-07-09T19:01:56,505 !! 2024-07-09T19:01:56,505 ******************************************************************************** 2024-07-09T19:01:56,506 ############################ 2024-07-09T19:01:56,506 # Package would be ignored # 2024-07-09T19:01:56,507 ############################ 2024-07-09T19:01:56,507 Python recognizes 'multiqc.modules.cellranger' as an importable package[^1], 2024-07-09T19:01:56,508 but it is absent from setuptools' `packages` configuration. 2024-07-09T19:01:56,509 This leads to an ambiguous overall configuration. If you want to distribute this 2024-07-09T19:01:56,509 package, please make sure that 'multiqc.modules.cellranger' is explicitly added 2024-07-09T19:01:56,510 to the `packages` configuration field. 2024-07-09T19:01:56,511 Alternatively, you can also rely on setuptools' discovery methods 2024-07-09T19:01:56,512 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-07-09T19:01:56,513 instead of `find_packages(...)`/`find:`). 2024-07-09T19:01:56,514 You can read more about "package discovery" on setuptools documentation page: 2024-07-09T19:01:56,515 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-07-09T19:01:56,515 If you don't want 'multiqc.modules.cellranger' to be distributed and are 2024-07-09T19:01:56,516 already explicitly excluding 'multiqc.modules.cellranger' via 2024-07-09T19:01:56,516 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-07-09T19:01:56,517 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-07-09T19:01:56,517 combination with a more fine grained `package-data` configuration. 2024-07-09T19:01:56,518 You can read more about "package data files" on setuptools documentation page: 2024-07-09T19:01:56,518 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-07-09T19:01:56,519 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-07-09T19:01:56,520 even if it does not contain any `.py` files. 2024-07-09T19:01:56,520 On the other hand, currently there is no concept of package data 2024-07-09T19:01:56,521 directory, all directories are treated like packages. 2024-07-09T19:01:56,521 ******************************************************************************** 2024-07-09T19:01:56,522 !! 2024-07-09T19:01:56,522 check.warn(importable) 2024-07-09T19:01:56,522 /tmp/pip-build-env-abllg6kk/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.checkqc' is absent from the `packages` configuration. 2024-07-09T19:01:56,523 !! 2024-07-09T19:01:56,524 ******************************************************************************** 2024-07-09T19:01:56,524 ############################ 2024-07-09T19:01:56,525 # Package would be ignored # 2024-07-09T19:01:56,525 ############################ 2024-07-09T19:01:56,526 Python recognizes 'multiqc.modules.checkqc' as an importable package[^1], 2024-07-09T19:01:56,526 but it is absent from setuptools' `packages` configuration. 2024-07-09T19:01:56,528 This leads to an ambiguous overall configuration. If you want to distribute this 2024-07-09T19:01:56,528 package, please make sure that 'multiqc.modules.checkqc' is explicitly added 2024-07-09T19:01:56,529 to the `packages` configuration field. 2024-07-09T19:01:56,530 Alternatively, you can also rely on setuptools' discovery methods 2024-07-09T19:01:56,530 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-07-09T19:01:56,531 instead of `find_packages(...)`/`find:`). 2024-07-09T19:01:56,532 You can read more about "package discovery" on setuptools documentation page: 2024-07-09T19:01:56,533 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-07-09T19:01:56,534 If you don't want 'multiqc.modules.checkqc' to be distributed and are 2024-07-09T19:01:56,534 already explicitly excluding 'multiqc.modules.checkqc' via 2024-07-09T19:01:56,535 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-07-09T19:01:56,535 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-07-09T19:01:56,535 combination with a more fine grained `package-data` configuration. 2024-07-09T19:01:56,537 You can read more about "package data files" on setuptools documentation page: 2024-07-09T19:01:56,538 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-07-09T19:01:56,539 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-07-09T19:01:56,540 even if it does not contain any `.py` files. 2024-07-09T19:01:56,540 On the other hand, currently there is no concept of package data 2024-07-09T19:01:56,541 directory, all directories are treated like packages. 2024-07-09T19:01:56,542 ******************************************************************************** 2024-07-09T19:01:56,542 !! 2024-07-09T19:01:56,543 check.warn(importable) 2024-07-09T19:01:56,543 /tmp/pip-build-env-abllg6kk/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.clipandmerge' is absent from the `packages` configuration. 2024-07-09T19:01:56,543 !! 2024-07-09T19:01:56,544 ******************************************************************************** 2024-07-09T19:01:56,544 ############################ 2024-07-09T19:01:56,545 # Package would be ignored # 2024-07-09T19:01:56,545 ############################ 2024-07-09T19:01:56,545 Python recognizes 'multiqc.modules.clipandmerge' as an importable package[^1], 2024-07-09T19:01:56,546 but it is absent from setuptools' `packages` configuration. 2024-07-09T19:01:56,546 This leads to an ambiguous overall configuration. If you want to distribute this 2024-07-09T19:01:56,547 package, please make sure that 'multiqc.modules.clipandmerge' is explicitly added 2024-07-09T19:01:56,547 to the `packages` configuration field. 2024-07-09T19:01:56,548 Alternatively, you can also rely on setuptools' discovery methods 2024-07-09T19:01:56,548 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-07-09T19:01:56,548 instead of `find_packages(...)`/`find:`). 2024-07-09T19:01:56,549 You can read more about "package discovery" on setuptools documentation page: 2024-07-09T19:01:56,550 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-07-09T19:01:56,551 If you don't want 'multiqc.modules.clipandmerge' to be distributed and are 2024-07-09T19:01:56,552 already explicitly excluding 'multiqc.modules.clipandmerge' via 2024-07-09T19:01:56,553 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-07-09T19:01:56,553 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-07-09T19:01:56,553 combination with a more fine grained `package-data` configuration. 2024-07-09T19:01:56,554 You can read more about "package data files" on setuptools documentation page: 2024-07-09T19:01:56,555 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-07-09T19:01:56,557 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-07-09T19:01:56,557 even if it does not contain any `.py` files. 2024-07-09T19:01:56,557 On the other hand, currently there is no concept of package data 2024-07-09T19:01:56,558 directory, all directories are treated like packages. 2024-07-09T19:01:56,558 ******************************************************************************** 2024-07-09T19:01:56,559 !! 2024-07-09T19:01:56,560 check.warn(importable) 2024-07-09T19:01:56,560 /tmp/pip-build-env-abllg6kk/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.clusterflow' is absent from the `packages` configuration. 2024-07-09T19:01:56,561 !! 2024-07-09T19:01:56,562 ******************************************************************************** 2024-07-09T19:01:56,562 ############################ 2024-07-09T19:01:56,563 # Package would be ignored # 2024-07-09T19:01:56,563 ############################ 2024-07-09T19:01:56,564 Python recognizes 'multiqc.modules.clusterflow' as an importable package[^1], 2024-07-09T19:01:56,564 but it is absent from setuptools' `packages` configuration. 2024-07-09T19:01:56,566 This leads to an ambiguous overall configuration. If you want to distribute this 2024-07-09T19:01:56,566 package, please make sure that 'multiqc.modules.clusterflow' is explicitly added 2024-07-09T19:01:56,566 to the `packages` configuration field. 2024-07-09T19:01:56,567 Alternatively, you can also rely on setuptools' discovery methods 2024-07-09T19:01:56,567 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-07-09T19:01:56,568 instead of `find_packages(...)`/`find:`). 2024-07-09T19:01:56,568 You can read more about "package discovery" on setuptools documentation page: 2024-07-09T19:01:56,569 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-07-09T19:01:56,570 If you don't want 'multiqc.modules.clusterflow' to be distributed and are 2024-07-09T19:01:56,570 already explicitly excluding 'multiqc.modules.clusterflow' via 2024-07-09T19:01:56,570 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-07-09T19:01:56,571 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-07-09T19:01:56,571 combination with a more fine grained `package-data` configuration. 2024-07-09T19:01:56,572 You can read more about "package data files" on setuptools documentation page: 2024-07-09T19:01:56,572 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-07-09T19:01:56,574 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-07-09T19:01:56,574 even if it does not contain any `.py` files. 2024-07-09T19:01:56,574 On the other hand, currently there is no concept of package data 2024-07-09T19:01:56,575 directory, all directories are treated like packages. 2024-07-09T19:01:56,575 ******************************************************************************** 2024-07-09T19:01:56,576 !! 2024-07-09T19:01:56,577 check.warn(importable) 2024-07-09T19:01:56,577 /tmp/pip-build-env-abllg6kk/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.conpair' is absent from the `packages` configuration. 2024-07-09T19:01:56,578 !! 2024-07-09T19:01:56,579 ******************************************************************************** 2024-07-09T19:01:56,579 ############################ 2024-07-09T19:01:56,580 # Package would be ignored # 2024-07-09T19:01:56,580 ############################ 2024-07-09T19:01:56,581 Python recognizes 'multiqc.modules.conpair' as an importable package[^1], 2024-07-09T19:01:56,581 but it is absent from setuptools' `packages` configuration. 2024-07-09T19:01:56,584 This leads to an ambiguous overall configuration. If you want to distribute this 2024-07-09T19:01:56,585 package, please make sure that 'multiqc.modules.conpair' is explicitly added 2024-07-09T19:01:56,585 to the `packages` configuration field. 2024-07-09T19:01:56,586 Alternatively, you can also rely on setuptools' discovery methods 2024-07-09T19:01:56,586 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-07-09T19:01:56,587 instead of `find_packages(...)`/`find:`). 2024-07-09T19:01:56,588 You can read more about "package discovery" on setuptools documentation page: 2024-07-09T19:01:56,589 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-07-09T19:01:56,590 If you don't want 'multiqc.modules.conpair' to be distributed and are 2024-07-09T19:01:56,590 already explicitly excluding 'multiqc.modules.conpair' via 2024-07-09T19:01:56,591 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-07-09T19:01:56,591 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-07-09T19:01:56,592 combination with a more fine grained `package-data` configuration. 2024-07-09T19:01:56,593 You can read more about "package data files" on setuptools documentation page: 2024-07-09T19:01:56,594 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-07-09T19:01:56,595 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-07-09T19:01:56,595 even if it does not contain any `.py` files. 2024-07-09T19:01:56,595 On the other hand, currently there is no concept of package data 2024-07-09T19:01:56,596 directory, all directories are treated like packages. 2024-07-09T19:01:56,596 ******************************************************************************** 2024-07-09T19:01:56,597 !! 2024-07-09T19:01:56,597 check.warn(importable) 2024-07-09T19:01:56,598 /tmp/pip-build-env-abllg6kk/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.custom_content' is absent from the `packages` configuration. 2024-07-09T19:01:56,598 !! 2024-07-09T19:01:56,599 ******************************************************************************** 2024-07-09T19:01:56,599 ############################ 2024-07-09T19:01:56,599 # Package would be ignored # 2024-07-09T19:01:56,600 ############################ 2024-07-09T19:01:56,600 Python recognizes 'multiqc.modules.custom_content' as an importable package[^1], 2024-07-09T19:01:56,601 but it is absent from setuptools' `packages` configuration. 2024-07-09T19:01:56,601 This leads to an ambiguous overall configuration. If you want to distribute this 2024-07-09T19:01:56,602 package, please make sure that 'multiqc.modules.custom_content' is explicitly added 2024-07-09T19:01:56,602 to the `packages` configuration field. 2024-07-09T19:01:56,603 Alternatively, you can also rely on setuptools' discovery methods 2024-07-09T19:01:56,604 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-07-09T19:01:56,605 instead of `find_packages(...)`/`find:`). 2024-07-09T19:01:56,606 You can read more about "package discovery" on setuptools documentation page: 2024-07-09T19:01:56,607 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-07-09T19:01:56,608 If you don't want 'multiqc.modules.custom_content' to be distributed and are 2024-07-09T19:01:56,608 already explicitly excluding 'multiqc.modules.custom_content' via 2024-07-09T19:01:56,609 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-07-09T19:01:56,610 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-07-09T19:01:56,610 combination with a more fine grained `package-data` configuration. 2024-07-09T19:01:56,611 You can read more about "package data files" on setuptools documentation page: 2024-07-09T19:01:56,612 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-07-09T19:01:56,613 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-07-09T19:01:56,614 even if it does not contain any `.py` files. 2024-07-09T19:01:56,614 On the other hand, currently there is no concept of package data 2024-07-09T19:01:56,615 directory, all directories are treated like packages. 2024-07-09T19:01:56,615 ******************************************************************************** 2024-07-09T19:01:56,617 !! 2024-07-09T19:01:56,617 check.warn(importable) 2024-07-09T19:01:56,618 /tmp/pip-build-env-abllg6kk/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.cutadapt' is absent from the `packages` configuration. 2024-07-09T19:01:56,618 !! 2024-07-09T19:01:56,619 ******************************************************************************** 2024-07-09T19:01:56,620 ############################ 2024-07-09T19:01:56,620 # Package would be ignored # 2024-07-09T19:01:56,621 ############################ 2024-07-09T19:01:56,621 Python recognizes 'multiqc.modules.cutadapt' as an importable package[^1], 2024-07-09T19:01:56,621 but it is absent from setuptools' `packages` configuration. 2024-07-09T19:01:56,622 This leads to an ambiguous overall configuration. If you want to distribute this 2024-07-09T19:01:56,622 package, please make sure that 'multiqc.modules.cutadapt' is explicitly added 2024-07-09T19:01:56,623 to the `packages` configuration field. 2024-07-09T19:01:56,623 Alternatively, you can also rely on setuptools' discovery methods 2024-07-09T19:01:56,624 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-07-09T19:01:56,625 instead of `find_packages(...)`/`find:`). 2024-07-09T19:01:56,625 You can read more about "package discovery" on setuptools documentation page: 2024-07-09T19:01:56,626 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-07-09T19:01:56,627 If you don't want 'multiqc.modules.cutadapt' to be distributed and are 2024-07-09T19:01:56,628 already explicitly excluding 'multiqc.modules.cutadapt' via 2024-07-09T19:01:56,628 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-07-09T19:01:56,629 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-07-09T19:01:56,629 combination with a more fine grained `package-data` configuration. 2024-07-09T19:01:56,630 You can read more about "package data files" on setuptools documentation page: 2024-07-09T19:01:56,632 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-07-09T19:01:56,634 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-07-09T19:01:56,634 even if it does not contain any `.py` files. 2024-07-09T19:01:56,635 On the other hand, currently there is no concept of package data 2024-07-09T19:01:56,636 directory, all directories are treated like packages. 2024-07-09T19:01:56,636 ******************************************************************************** 2024-07-09T19:01:56,638 !! 2024-07-09T19:01:56,638 check.warn(importable) 2024-07-09T19:01:56,639 /tmp/pip-build-env-abllg6kk/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.damageprofiler' is absent from the `packages` configuration. 2024-07-09T19:01:56,640 !! 2024-07-09T19:01:56,641 ******************************************************************************** 2024-07-09T19:01:56,641 ############################ 2024-07-09T19:01:56,642 # Package would be ignored # 2024-07-09T19:01:56,643 ############################ 2024-07-09T19:01:56,643 Python recognizes 'multiqc.modules.damageprofiler' as an importable package[^1], 2024-07-09T19:01:56,644 but it is absent from setuptools' `packages` configuration. 2024-07-09T19:01:56,645 This leads to an ambiguous overall configuration. If you want to distribute this 2024-07-09T19:01:56,646 package, please make sure that 'multiqc.modules.damageprofiler' is explicitly added 2024-07-09T19:01:56,646 to the `packages` configuration field. 2024-07-09T19:01:56,647 Alternatively, you can also rely on setuptools' discovery methods 2024-07-09T19:01:56,648 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-07-09T19:01:56,649 instead of `find_packages(...)`/`find:`). 2024-07-09T19:01:56,650 You can read more about "package discovery" on setuptools documentation page: 2024-07-09T19:01:56,651 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-07-09T19:01:56,652 If you don't want 'multiqc.modules.damageprofiler' to be distributed and are 2024-07-09T19:01:56,653 already explicitly excluding 'multiqc.modules.damageprofiler' via 2024-07-09T19:01:56,653 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-07-09T19:01:56,654 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-07-09T19:01:56,654 combination with a more fine grained `package-data` configuration. 2024-07-09T19:01:56,655 You can read more about "package data files" on setuptools documentation page: 2024-07-09T19:01:56,656 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-07-09T19:01:56,657 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-07-09T19:01:56,658 even if it does not contain any `.py` files. 2024-07-09T19:01:56,658 On the other hand, currently there is no concept of package data 2024-07-09T19:01:56,659 directory, all directories are treated like packages. 2024-07-09T19:01:56,659 ******************************************************************************** 2024-07-09T19:01:56,660 !! 2024-07-09T19:01:56,661 check.warn(importable) 2024-07-09T19:01:56,661 /tmp/pip-build-env-abllg6kk/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.dedup' is absent from the `packages` configuration. 2024-07-09T19:01:56,662 !! 2024-07-09T19:01:56,663 ******************************************************************************** 2024-07-09T19:01:56,665 ############################ 2024-07-09T19:01:56,666 # Package would be ignored # 2024-07-09T19:01:56,666 ############################ 2024-07-09T19:01:56,667 Python recognizes 'multiqc.modules.dedup' as an importable package[^1], 2024-07-09T19:01:56,668 but it is absent from setuptools' `packages` configuration. 2024-07-09T19:01:56,669 This leads to an ambiguous overall configuration. If you want to distribute this 2024-07-09T19:01:56,670 package, please make sure that 'multiqc.modules.dedup' is explicitly added 2024-07-09T19:01:56,670 to the `packages` configuration field. 2024-07-09T19:01:56,672 Alternatively, you can also rely on setuptools' discovery methods 2024-07-09T19:01:56,672 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-07-09T19:01:56,673 instead of `find_packages(...)`/`find:`). 2024-07-09T19:01:56,674 You can read more about "package discovery" on setuptools documentation page: 2024-07-09T19:01:56,675 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-07-09T19:01:56,677 If you don't want 'multiqc.modules.dedup' to be distributed and are 2024-07-09T19:01:56,677 already explicitly excluding 'multiqc.modules.dedup' via 2024-07-09T19:01:56,678 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-07-09T19:01:56,678 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-07-09T19:01:56,679 combination with a more fine grained `package-data` configuration. 2024-07-09T19:01:56,680 You can read more about "package data files" on setuptools documentation page: 2024-07-09T19:01:56,681 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-07-09T19:01:56,683 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-07-09T19:01:56,684 even if it does not contain any `.py` files. 2024-07-09T19:01:56,685 On the other hand, currently there is no concept of package data 2024-07-09T19:01:56,685 directory, all directories are treated like packages. 2024-07-09T19:01:56,686 ******************************************************************************** 2024-07-09T19:01:56,687 !! 2024-07-09T19:01:56,688 check.warn(importable) 2024-07-09T19:01:56,688 /tmp/pip-build-env-abllg6kk/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.deeptools' is absent from the `packages` configuration. 2024-07-09T19:01:56,689 !! 2024-07-09T19:01:56,689 ******************************************************************************** 2024-07-09T19:01:56,690 ############################ 2024-07-09T19:01:56,690 # Package would be ignored # 2024-07-09T19:01:56,691 ############################ 2024-07-09T19:01:56,691 Python recognizes 'multiqc.modules.deeptools' as an importable package[^1], 2024-07-09T19:01:56,692 but it is absent from setuptools' `packages` configuration. 2024-07-09T19:01:56,693 This leads to an ambiguous overall configuration. If you want to distribute this 2024-07-09T19:01:56,693 package, please make sure that 'multiqc.modules.deeptools' is explicitly added 2024-07-09T19:01:56,694 to the `packages` configuration field. 2024-07-09T19:01:56,694 Alternatively, you can also rely on setuptools' discovery methods 2024-07-09T19:01:56,695 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-07-09T19:01:56,695 instead of `find_packages(...)`/`find:`). 2024-07-09T19:01:56,696 You can read more about "package discovery" on setuptools documentation page: 2024-07-09T19:01:56,697 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-07-09T19:01:56,698 If you don't want 'multiqc.modules.deeptools' to be distributed and are 2024-07-09T19:01:56,699 already explicitly excluding 'multiqc.modules.deeptools' via 2024-07-09T19:01:56,699 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-07-09T19:01:56,700 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-07-09T19:01:56,701 combination with a more fine grained `package-data` configuration. 2024-07-09T19:01:56,702 You can read more about "package data files" on setuptools documentation page: 2024-07-09T19:01:56,704 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-07-09T19:01:56,706 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-07-09T19:01:56,706 even if it does not contain any `.py` files. 2024-07-09T19:01:56,707 On the other hand, currently there is no concept of package data 2024-07-09T19:01:56,708 directory, all directories are treated like packages. 2024-07-09T19:01:56,708 ******************************************************************************** 2024-07-09T19:01:56,709 !! 2024-07-09T19:01:56,710 check.warn(importable) 2024-07-09T19:01:56,710 /tmp/pip-build-env-abllg6kk/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.diamond' is absent from the `packages` configuration. 2024-07-09T19:01:56,711 !! 2024-07-09T19:01:56,712 ******************************************************************************** 2024-07-09T19:01:56,713 ############################ 2024-07-09T19:01:56,713 # Package would be ignored # 2024-07-09T19:01:56,714 ############################ 2024-07-09T19:01:56,715 Python recognizes 'multiqc.modules.diamond' as an importable package[^1], 2024-07-09T19:01:56,715 but it is absent from setuptools' `packages` configuration. 2024-07-09T19:01:56,717 This leads to an ambiguous overall configuration. If you want to distribute this 2024-07-09T19:01:56,717 package, please make sure that 'multiqc.modules.diamond' is explicitly added 2024-07-09T19:01:56,718 to the `packages` configuration field. 2024-07-09T19:01:56,719 Alternatively, you can also rely on setuptools' discovery methods 2024-07-09T19:01:56,720 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-07-09T19:01:56,720 instead of `find_packages(...)`/`find:`). 2024-07-09T19:01:56,721 You can read more about "package discovery" on setuptools documentation page: 2024-07-09T19:01:56,722 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-07-09T19:01:56,723 If you don't want 'multiqc.modules.diamond' to be distributed and are 2024-07-09T19:01:56,723 already explicitly excluding 'multiqc.modules.diamond' via 2024-07-09T19:01:56,724 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-07-09T19:01:56,724 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-07-09T19:01:56,725 combination with a more fine grained `package-data` configuration. 2024-07-09T19:01:56,726 You can read more about "package data files" on setuptools documentation page: 2024-07-09T19:01:56,727 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-07-09T19:01:56,728 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-07-09T19:01:56,729 even if it does not contain any `.py` files. 2024-07-09T19:01:56,729 On the other hand, currently there is no concept of package data 2024-07-09T19:01:56,729 directory, all directories are treated like packages. 2024-07-09T19:01:56,730 ******************************************************************************** 2024-07-09T19:01:56,731 !! 2024-07-09T19:01:56,732 check.warn(importable) 2024-07-09T19:01:56,732 /tmp/pip-build-env-abllg6kk/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.disambiguate' is absent from the `packages` configuration. 2024-07-09T19:01:56,733 !! 2024-07-09T19:01:56,734 ******************************************************************************** 2024-07-09T19:01:56,735 ############################ 2024-07-09T19:01:56,736 # Package would be ignored # 2024-07-09T19:01:56,737 ############################ 2024-07-09T19:01:56,737 Python recognizes 'multiqc.modules.disambiguate' as an importable package[^1], 2024-07-09T19:01:56,738 but it is absent from setuptools' `packages` configuration. 2024-07-09T19:01:56,739 This leads to an ambiguous overall configuration. If you want to distribute this 2024-07-09T19:01:56,740 package, please make sure that 'multiqc.modules.disambiguate' is explicitly added 2024-07-09T19:01:56,741 to the `packages` configuration field. 2024-07-09T19:01:56,742 Alternatively, you can also rely on setuptools' discovery methods 2024-07-09T19:01:56,742 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-07-09T19:01:56,743 instead of `find_packages(...)`/`find:`). 2024-07-09T19:01:56,744 You can read more about "package discovery" on setuptools documentation page: 2024-07-09T19:01:56,745 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-07-09T19:01:56,746 If you don't want 'multiqc.modules.disambiguate' to be distributed and are 2024-07-09T19:01:56,747 already explicitly excluding 'multiqc.modules.disambiguate' via 2024-07-09T19:01:56,748 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-07-09T19:01:56,748 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-07-09T19:01:56,749 combination with a more fine grained `package-data` configuration. 2024-07-09T19:01:56,750 You can read more about "package data files" on setuptools documentation page: 2024-07-09T19:01:56,752 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-07-09T19:01:56,753 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-07-09T19:01:56,754 even if it does not contain any `.py` files. 2024-07-09T19:01:56,754 On the other hand, currently there is no concept of package data 2024-07-09T19:01:56,754 directory, all directories are treated like packages. 2024-07-09T19:01:56,755 ******************************************************************************** 2024-07-09T19:01:56,756 !! 2024-07-09T19:01:56,757 check.warn(importable) 2024-07-09T19:01:56,757 /tmp/pip-build-env-abllg6kk/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.dragen' is absent from the `packages` configuration. 2024-07-09T19:01:56,758 !! 2024-07-09T19:01:56,759 ******************************************************************************** 2024-07-09T19:01:56,759 ############################ 2024-07-09T19:01:56,760 # Package would be ignored # 2024-07-09T19:01:56,760 ############################ 2024-07-09T19:01:56,761 Python recognizes 'multiqc.modules.dragen' as an importable package[^1], 2024-07-09T19:01:56,761 but it is absent from setuptools' `packages` configuration. 2024-07-09T19:01:56,762 This leads to an ambiguous overall configuration. If you want to distribute this 2024-07-09T19:01:56,762 package, please make sure that 'multiqc.modules.dragen' is explicitly added 2024-07-09T19:01:56,763 to the `packages` configuration field. 2024-07-09T19:01:56,764 Alternatively, you can also rely on setuptools' discovery methods 2024-07-09T19:01:56,764 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-07-09T19:01:56,765 instead of `find_packages(...)`/`find:`). 2024-07-09T19:01:56,766 You can read more about "package discovery" on setuptools documentation page: 2024-07-09T19:01:56,767 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-07-09T19:01:56,769 If you don't want 'multiqc.modules.dragen' to be distributed and are 2024-07-09T19:01:56,769 already explicitly excluding 'multiqc.modules.dragen' via 2024-07-09T19:01:56,770 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-07-09T19:01:56,770 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-07-09T19:01:56,771 combination with a more fine grained `package-data` configuration. 2024-07-09T19:01:56,772 You can read more about "package data files" on setuptools documentation page: 2024-07-09T19:01:56,773 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-07-09T19:01:56,775 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-07-09T19:01:56,776 even if it does not contain any `.py` files. 2024-07-09T19:01:56,776 On the other hand, currently there is no concept of package data 2024-07-09T19:01:56,777 directory, all directories are treated like packages. 2024-07-09T19:01:56,777 ******************************************************************************** 2024-07-09T19:01:56,778 !! 2024-07-09T19:01:56,779 check.warn(importable) 2024-07-09T19:01:56,780 /tmp/pip-build-env-abllg6kk/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.dragen.tests' is absent from the `packages` configuration. 2024-07-09T19:01:56,780 !! 2024-07-09T19:01:56,781 ******************************************************************************** 2024-07-09T19:01:56,782 ############################ 2024-07-09T19:01:56,783 # Package would be ignored # 2024-07-09T19:01:56,783 ############################ 2024-07-09T19:01:56,785 Python recognizes 'multiqc.modules.dragen.tests' as an importable package[^1], 2024-07-09T19:01:56,785 but it is absent from setuptools' `packages` configuration. 2024-07-09T19:01:56,786 This leads to an ambiguous overall configuration. If you want to distribute this 2024-07-09T19:01:56,786 package, please make sure that 'multiqc.modules.dragen.tests' is explicitly added 2024-07-09T19:01:56,787 to the `packages` configuration field. 2024-07-09T19:01:56,788 Alternatively, you can also rely on setuptools' discovery methods 2024-07-09T19:01:56,788 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-07-09T19:01:56,789 instead of `find_packages(...)`/`find:`). 2024-07-09T19:01:56,790 You can read more about "package discovery" on setuptools documentation page: 2024-07-09T19:01:56,791 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-07-09T19:01:56,791 If you don't want 'multiqc.modules.dragen.tests' to be distributed and are 2024-07-09T19:01:56,792 already explicitly excluding 'multiqc.modules.dragen.tests' via 2024-07-09T19:01:56,792 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-07-09T19:01:56,793 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-07-09T19:01:56,793 combination with a more fine grained `package-data` configuration. 2024-07-09T19:01:56,794 You can read more about "package data files" on setuptools documentation page: 2024-07-09T19:01:56,795 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-07-09T19:01:56,797 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-07-09T19:01:56,798 even if it does not contain any `.py` files. 2024-07-09T19:01:56,799 On the other hand, currently there is no concept of package data 2024-07-09T19:01:56,799 directory, all directories are treated like packages. 2024-07-09T19:01:56,800 ******************************************************************************** 2024-07-09T19:01:56,801 !! 2024-07-09T19:01:56,802 check.warn(importable) 2024-07-09T19:01:56,803 /tmp/pip-build-env-abllg6kk/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.dragen_fastqc' is absent from the `packages` configuration. 2024-07-09T19:01:56,803 !! 2024-07-09T19:01:56,805 ******************************************************************************** 2024-07-09T19:01:56,805 ############################ 2024-07-09T19:01:56,806 # Package would be ignored # 2024-07-09T19:01:56,807 ############################ 2024-07-09T19:01:56,807 Python recognizes 'multiqc.modules.dragen_fastqc' as an importable package[^1], 2024-07-09T19:01:56,808 but it is absent from setuptools' `packages` configuration. 2024-07-09T19:01:56,809 This leads to an ambiguous overall configuration. If you want to distribute this 2024-07-09T19:01:56,810 package, please make sure that 'multiqc.modules.dragen_fastqc' is explicitly added 2024-07-09T19:01:56,810 to the `packages` configuration field. 2024-07-09T19:01:56,812 Alternatively, you can also rely on setuptools' discovery methods 2024-07-09T19:01:56,812 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-07-09T19:01:56,813 instead of `find_packages(...)`/`find:`). 2024-07-09T19:01:56,814 You can read more about "package discovery" on setuptools documentation page: 2024-07-09T19:01:56,815 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-07-09T19:01:56,817 If you don't want 'multiqc.modules.dragen_fastqc' to be distributed and are 2024-07-09T19:01:56,817 already explicitly excluding 'multiqc.modules.dragen_fastqc' via 2024-07-09T19:01:56,818 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-07-09T19:01:56,819 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-07-09T19:01:56,819 combination with a more fine grained `package-data` configuration. 2024-07-09T19:01:56,820 You can read more about "package data files" on setuptools documentation page: 2024-07-09T19:01:56,821 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-07-09T19:01:56,823 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-07-09T19:01:56,823 even if it does not contain any `.py` files. 2024-07-09T19:01:56,823 On the other hand, currently there is no concept of package data 2024-07-09T19:01:56,824 directory, all directories are treated like packages. 2024-07-09T19:01:56,824 ******************************************************************************** 2024-07-09T19:01:56,825 !! 2024-07-09T19:01:56,825 check.warn(importable) 2024-07-09T19:01:56,826 /tmp/pip-build-env-abllg6kk/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.dragen_fastqc.assets.js' is absent from the `packages` configuration. 2024-07-09T19:01:56,826 !! 2024-07-09T19:01:56,827 ******************************************************************************** 2024-07-09T19:01:56,827 ############################ 2024-07-09T19:01:56,828 # Package would be ignored # 2024-07-09T19:01:56,828 ############################ 2024-07-09T19:01:56,828 Python recognizes 'multiqc.modules.dragen_fastqc.assets.js' as an importable package[^1], 2024-07-09T19:01:56,829 but it is absent from setuptools' `packages` configuration. 2024-07-09T19:01:56,830 This leads to an ambiguous overall configuration. If you want to distribute this 2024-07-09T19:01:56,831 package, please make sure that 'multiqc.modules.dragen_fastqc.assets.js' is explicitly added 2024-07-09T19:01:56,831 to the `packages` configuration field. 2024-07-09T19:01:56,832 Alternatively, you can also rely on setuptools' discovery methods 2024-07-09T19:01:56,833 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-07-09T19:01:56,833 instead of `find_packages(...)`/`find:`). 2024-07-09T19:01:56,834 You can read more about "package discovery" on setuptools documentation page: 2024-07-09T19:01:56,835 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-07-09T19:01:56,837 If you don't want 'multiqc.modules.dragen_fastqc.assets.js' to be distributed and are 2024-07-09T19:01:56,837 already explicitly excluding 'multiqc.modules.dragen_fastqc.assets.js' via 2024-07-09T19:01:56,837 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-07-09T19:01:56,838 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-07-09T19:01:56,838 combination with a more fine grained `package-data` configuration. 2024-07-09T19:01:56,839 You can read more about "package data files" on setuptools documentation page: 2024-07-09T19:01:56,840 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-07-09T19:01:56,842 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-07-09T19:01:56,842 even if it does not contain any `.py` files. 2024-07-09T19:01:56,843 On the other hand, currently there is no concept of package data 2024-07-09T19:01:56,844 directory, all directories are treated like packages. 2024-07-09T19:01:56,844 ******************************************************************************** 2024-07-09T19:01:56,846 !! 2024-07-09T19:01:56,846 check.warn(importable) 2024-07-09T19:01:56,846 /tmp/pip-build-env-abllg6kk/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.eigenstratdatabasetools' is absent from the `packages` configuration. 2024-07-09T19:01:56,847 !! 2024-07-09T19:01:56,847 ******************************************************************************** 2024-07-09T19:01:56,848 ############################ 2024-07-09T19:01:56,848 # Package would be ignored # 2024-07-09T19:01:56,848 ############################ 2024-07-09T19:01:56,849 Python recognizes 'multiqc.modules.eigenstratdatabasetools' as an importable package[^1], 2024-07-09T19:01:56,849 but it is absent from setuptools' `packages` configuration. 2024-07-09T19:01:56,850 This leads to an ambiguous overall configuration. If you want to distribute this 2024-07-09T19:01:56,850 package, please make sure that 'multiqc.modules.eigenstratdatabasetools' is explicitly added 2024-07-09T19:01:56,850 to the `packages` configuration field. 2024-07-09T19:01:56,851 Alternatively, you can also rely on setuptools' discovery methods 2024-07-09T19:01:56,851 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-07-09T19:01:56,852 instead of `find_packages(...)`/`find:`). 2024-07-09T19:01:56,853 You can read more about "package discovery" on setuptools documentation page: 2024-07-09T19:01:56,853 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-07-09T19:01:56,854 If you don't want 'multiqc.modules.eigenstratdatabasetools' to be distributed and are 2024-07-09T19:01:56,854 already explicitly excluding 'multiqc.modules.eigenstratdatabasetools' via 2024-07-09T19:01:56,855 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-07-09T19:01:56,855 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-07-09T19:01:56,856 combination with a more fine grained `package-data` configuration. 2024-07-09T19:01:56,857 You can read more about "package data files" on setuptools documentation page: 2024-07-09T19:01:56,858 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-07-09T19:01:56,860 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-07-09T19:01:56,860 even if it does not contain any `.py` files. 2024-07-09T19:01:56,861 On the other hand, currently there is no concept of package data 2024-07-09T19:01:56,861 directory, all directories are treated like packages. 2024-07-09T19:01:56,862 ******************************************************************************** 2024-07-09T19:01:56,863 !! 2024-07-09T19:01:56,863 check.warn(importable) 2024-07-09T19:01:56,864 /tmp/pip-build-env-abllg6kk/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.fastp' is absent from the `packages` configuration. 2024-07-09T19:01:56,864 !! 2024-07-09T19:01:56,865 ******************************************************************************** 2024-07-09T19:01:56,865 ############################ 2024-07-09T19:01:56,866 # Package would be ignored # 2024-07-09T19:01:56,866 ############################ 2024-07-09T19:01:56,867 Python recognizes 'multiqc.modules.fastp' as an importable package[^1], 2024-07-09T19:01:56,867 but it is absent from setuptools' `packages` configuration. 2024-07-09T19:01:56,868 This leads to an ambiguous overall configuration. If you want to distribute this 2024-07-09T19:01:56,869 package, please make sure that 'multiqc.modules.fastp' is explicitly added 2024-07-09T19:01:56,870 to the `packages` configuration field. 2024-07-09T19:01:56,871 Alternatively, you can also rely on setuptools' discovery methods 2024-07-09T19:01:56,871 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-07-09T19:01:56,872 instead of `find_packages(...)`/`find:`). 2024-07-09T19:01:56,872 You can read more about "package discovery" on setuptools documentation page: 2024-07-09T19:01:56,873 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-07-09T19:01:56,873 If you don't want 'multiqc.modules.fastp' to be distributed and are 2024-07-09T19:01:56,874 already explicitly excluding 'multiqc.modules.fastp' via 2024-07-09T19:01:56,874 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-07-09T19:01:56,874 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-07-09T19:01:56,875 combination with a more fine grained `package-data` configuration. 2024-07-09T19:01:56,875 You can read more about "package data files" on setuptools documentation page: 2024-07-09T19:01:56,876 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-07-09T19:01:56,877 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-07-09T19:01:56,877 even if it does not contain any `.py` files. 2024-07-09T19:01:56,878 On the other hand, currently there is no concept of package data 2024-07-09T19:01:56,878 directory, all directories are treated like packages. 2024-07-09T19:01:56,879 ******************************************************************************** 2024-07-09T19:01:56,879 !! 2024-07-09T19:01:56,880 check.warn(importable) 2024-07-09T19:01:56,880 /tmp/pip-build-env-abllg6kk/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.fastq_screen' is absent from the `packages` configuration. 2024-07-09T19:01:56,881 !! 2024-07-09T19:01:56,882 ******************************************************************************** 2024-07-09T19:01:56,882 ############################ 2024-07-09T19:01:56,883 # Package would be ignored # 2024-07-09T19:01:56,883 ############################ 2024-07-09T19:01:56,884 Python recognizes 'multiqc.modules.fastq_screen' as an importable package[^1], 2024-07-09T19:01:56,884 but it is absent from setuptools' `packages` configuration. 2024-07-09T19:01:56,886 This leads to an ambiguous overall configuration. If you want to distribute this 2024-07-09T19:01:56,886 package, please make sure that 'multiqc.modules.fastq_screen' is explicitly added 2024-07-09T19:01:56,887 to the `packages` configuration field. 2024-07-09T19:01:56,888 Alternatively, you can also rely on setuptools' discovery methods 2024-07-09T19:01:56,888 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-07-09T19:01:56,888 instead of `find_packages(...)`/`find:`). 2024-07-09T19:01:56,889 You can read more about "package discovery" on setuptools documentation page: 2024-07-09T19:01:56,890 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-07-09T19:01:56,891 If you don't want 'multiqc.modules.fastq_screen' to be distributed and are 2024-07-09T19:01:56,892 already explicitly excluding 'multiqc.modules.fastq_screen' via 2024-07-09T19:01:56,892 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-07-09T19:01:56,893 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-07-09T19:01:56,893 combination with a more fine grained `package-data` configuration. 2024-07-09T19:01:56,894 You can read more about "package data files" on setuptools documentation page: 2024-07-09T19:01:56,895 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-07-09T19:01:56,897 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-07-09T19:01:56,897 even if it does not contain any `.py` files. 2024-07-09T19:01:56,897 On the other hand, currently there is no concept of package data 2024-07-09T19:01:56,898 directory, all directories are treated like packages. 2024-07-09T19:01:56,898 ******************************************************************************** 2024-07-09T19:01:56,899 !! 2024-07-09T19:01:56,899 check.warn(importable) 2024-07-09T19:01:56,899 /tmp/pip-build-env-abllg6kk/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.fastqc' is absent from the `packages` configuration. 2024-07-09T19:01:56,900 !! 2024-07-09T19:01:56,900 ******************************************************************************** 2024-07-09T19:01:56,901 ############################ 2024-07-09T19:01:56,901 # Package would be ignored # 2024-07-09T19:01:56,901 ############################ 2024-07-09T19:01:56,902 Python recognizes 'multiqc.modules.fastqc' as an importable package[^1], 2024-07-09T19:01:56,902 but it is absent from setuptools' `packages` configuration. 2024-07-09T19:01:56,903 This leads to an ambiguous overall configuration. If you want to distribute this 2024-07-09T19:01:56,903 package, please make sure that 'multiqc.modules.fastqc' is explicitly added 2024-07-09T19:01:56,903 to the `packages` configuration field. 2024-07-09T19:01:56,904 Alternatively, you can also rely on setuptools' discovery methods 2024-07-09T19:01:56,904 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-07-09T19:01:56,905 instead of `find_packages(...)`/`find:`). 2024-07-09T19:01:56,906 You can read more about "package discovery" on setuptools documentation page: 2024-07-09T19:01:56,907 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-07-09T19:01:56,908 If you don't want 'multiqc.modules.fastqc' to be distributed and are 2024-07-09T19:01:56,909 already explicitly excluding 'multiqc.modules.fastqc' via 2024-07-09T19:01:56,909 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-07-09T19:01:56,910 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-07-09T19:01:56,910 combination with a more fine grained `package-data` configuration. 2024-07-09T19:01:56,912 You can read more about "package data files" on setuptools documentation page: 2024-07-09T19:01:56,913 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-07-09T19:01:56,914 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-07-09T19:01:56,915 even if it does not contain any `.py` files. 2024-07-09T19:01:56,915 On the other hand, currently there is no concept of package data 2024-07-09T19:01:56,915 directory, all directories are treated like packages. 2024-07-09T19:01:56,916 ******************************************************************************** 2024-07-09T19:01:56,917 !! 2024-07-09T19:01:56,917 check.warn(importable) 2024-07-09T19:01:56,918 /tmp/pip-build-env-abllg6kk/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.fastqc.assets.css' is absent from the `packages` configuration. 2024-07-09T19:01:56,918 !! 2024-07-09T19:01:56,919 ******************************************************************************** 2024-07-09T19:01:56,920 ############################ 2024-07-09T19:01:56,920 # Package would be ignored # 2024-07-09T19:01:56,921 ############################ 2024-07-09T19:01:56,922 Python recognizes 'multiqc.modules.fastqc.assets.css' as an importable package[^1], 2024-07-09T19:01:56,922 but it is absent from setuptools' `packages` configuration. 2024-07-09T19:01:56,923 This leads to an ambiguous overall configuration. If you want to distribute this 2024-07-09T19:01:56,923 package, please make sure that 'multiqc.modules.fastqc.assets.css' is explicitly added 2024-07-09T19:01:56,924 to the `packages` configuration field. 2024-07-09T19:01:56,925 Alternatively, you can also rely on setuptools' discovery methods 2024-07-09T19:01:56,925 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-07-09T19:01:56,925 instead of `find_packages(...)`/`find:`). 2024-07-09T19:01:56,926 You can read more about "package discovery" on setuptools documentation page: 2024-07-09T19:01:56,927 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-07-09T19:01:56,927 If you don't want 'multiqc.modules.fastqc.assets.css' to be distributed and are 2024-07-09T19:01:56,928 already explicitly excluding 'multiqc.modules.fastqc.assets.css' via 2024-07-09T19:01:56,928 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-07-09T19:01:56,928 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-07-09T19:01:56,929 combination with a more fine grained `package-data` configuration. 2024-07-09T19:01:56,930 You can read more about "package data files" on setuptools documentation page: 2024-07-09T19:01:56,930 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-07-09T19:01:56,931 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-07-09T19:01:56,932 even if it does not contain any `.py` files. 2024-07-09T19:01:56,932 On the other hand, currently there is no concept of package data 2024-07-09T19:01:56,933 directory, all directories are treated like packages. 2024-07-09T19:01:56,933 ******************************************************************************** 2024-07-09T19:01:56,934 !! 2024-07-09T19:01:56,935 check.warn(importable) 2024-07-09T19:01:56,935 /tmp/pip-build-env-abllg6kk/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.fastqc.assets.js' is absent from the `packages` configuration. 2024-07-09T19:01:56,936 !! 2024-07-09T19:01:56,937 ******************************************************************************** 2024-07-09T19:01:56,937 ############################ 2024-07-09T19:01:56,938 # Package would be ignored # 2024-07-09T19:01:56,938 ############################ 2024-07-09T19:01:56,939 Python recognizes 'multiqc.modules.fastqc.assets.js' as an importable package[^1], 2024-07-09T19:01:56,939 but it is absent from setuptools' `packages` configuration. 2024-07-09T19:01:56,940 This leads to an ambiguous overall configuration. If you want to distribute this 2024-07-09T19:01:56,941 package, please make sure that 'multiqc.modules.fastqc.assets.js' is explicitly added 2024-07-09T19:01:56,941 to the `packages` configuration field. 2024-07-09T19:01:56,942 Alternatively, you can also rely on setuptools' discovery methods 2024-07-09T19:01:56,942 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-07-09T19:01:56,943 instead of `find_packages(...)`/`find:`). 2024-07-09T19:01:56,944 You can read more about "package discovery" on setuptools documentation page: 2024-07-09T19:01:56,945 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-07-09T19:01:56,946 If you don't want 'multiqc.modules.fastqc.assets.js' to be distributed and are 2024-07-09T19:01:56,947 already explicitly excluding 'multiqc.modules.fastqc.assets.js' via 2024-07-09T19:01:56,947 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-07-09T19:01:56,948 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-07-09T19:01:56,949 combination with a more fine grained `package-data` configuration. 2024-07-09T19:01:56,949 You can read more about "package data files" on setuptools documentation page: 2024-07-09T19:01:56,950 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-07-09T19:01:56,951 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-07-09T19:01:56,951 even if it does not contain any `.py` files. 2024-07-09T19:01:56,952 On the other hand, currently there is no concept of package data 2024-07-09T19:01:56,952 directory, all directories are treated like packages. 2024-07-09T19:01:56,952 ******************************************************************************** 2024-07-09T19:01:56,953 !! 2024-07-09T19:01:56,953 check.warn(importable) 2024-07-09T19:01:56,954 /tmp/pip-build-env-abllg6kk/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.fastqc.fastqc_theoretical_gc' is absent from the `packages` configuration. 2024-07-09T19:01:56,954 !! 2024-07-09T19:01:56,955 ******************************************************************************** 2024-07-09T19:01:56,955 ############################ 2024-07-09T19:01:56,955 # Package would be ignored # 2024-07-09T19:01:56,956 ############################ 2024-07-09T19:01:56,956 Python recognizes 'multiqc.modules.fastqc.fastqc_theoretical_gc' as an importable package[^1], 2024-07-09T19:01:56,957 but it is absent from setuptools' `packages` configuration. 2024-07-09T19:01:56,957 This leads to an ambiguous overall configuration. If you want to distribute this 2024-07-09T19:01:56,958 package, please make sure that 'multiqc.modules.fastqc.fastqc_theoretical_gc' is explicitly added 2024-07-09T19:01:56,958 to the `packages` configuration field. 2024-07-09T19:01:56,959 Alternatively, you can also rely on setuptools' discovery methods 2024-07-09T19:01:56,960 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-07-09T19:01:56,960 instead of `find_packages(...)`/`find:`). 2024-07-09T19:01:56,961 You can read more about "package discovery" on setuptools documentation page: 2024-07-09T19:01:56,962 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-07-09T19:01:56,963 If you don't want 'multiqc.modules.fastqc.fastqc_theoretical_gc' to be distributed and are 2024-07-09T19:01:56,964 already explicitly excluding 'multiqc.modules.fastqc.fastqc_theoretical_gc' via 2024-07-09T19:01:56,964 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-07-09T19:01:56,965 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-07-09T19:01:56,965 combination with a more fine grained `package-data` configuration. 2024-07-09T19:01:56,966 You can read more about "package data files" on setuptools documentation page: 2024-07-09T19:01:56,967 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-07-09T19:01:56,969 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-07-09T19:01:56,969 even if it does not contain any `.py` files. 2024-07-09T19:01:56,970 On the other hand, currently there is no concept of package data 2024-07-09T19:01:56,970 directory, all directories are treated like packages. 2024-07-09T19:01:56,971 ******************************************************************************** 2024-07-09T19:01:56,972 !! 2024-07-09T19:01:56,972 check.warn(importable) 2024-07-09T19:01:56,973 /tmp/pip-build-env-abllg6kk/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.featureCounts' is absent from the `packages` configuration. 2024-07-09T19:01:56,973 !! 2024-07-09T19:01:56,974 ******************************************************************************** 2024-07-09T19:01:56,974 ############################ 2024-07-09T19:01:56,974 # Package would be ignored # 2024-07-09T19:01:56,975 ############################ 2024-07-09T19:01:56,975 Python recognizes 'multiqc.modules.featureCounts' as an importable package[^1], 2024-07-09T19:01:56,975 but it is absent from setuptools' `packages` configuration. 2024-07-09T19:01:56,976 This leads to an ambiguous overall configuration. If you want to distribute this 2024-07-09T19:01:56,976 package, please make sure that 'multiqc.modules.featureCounts' is explicitly added 2024-07-09T19:01:56,977 to the `packages` configuration field. 2024-07-09T19:01:56,978 Alternatively, you can also rely on setuptools' discovery methods 2024-07-09T19:01:56,978 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-07-09T19:01:56,978 instead of `find_packages(...)`/`find:`). 2024-07-09T19:01:56,979 You can read more about "package discovery" on setuptools documentation page: 2024-07-09T19:01:56,980 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-07-09T19:01:56,981 If you don't want 'multiqc.modules.featureCounts' to be distributed and are 2024-07-09T19:01:56,981 already explicitly excluding 'multiqc.modules.featureCounts' via 2024-07-09T19:01:56,982 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-07-09T19:01:56,982 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-07-09T19:01:56,983 combination with a more fine grained `package-data` configuration. 2024-07-09T19:01:56,984 You can read more about "package data files" on setuptools documentation page: 2024-07-09T19:01:56,985 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-07-09T19:01:56,987 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-07-09T19:01:56,987 even if it does not contain any `.py` files. 2024-07-09T19:01:56,988 On the other hand, currently there is no concept of package data 2024-07-09T19:01:56,989 directory, all directories are treated like packages. 2024-07-09T19:01:56,989 ******************************************************************************** 2024-07-09T19:01:56,990 !! 2024-07-09T19:01:56,990 check.warn(importable) 2024-07-09T19:01:56,991 /tmp/pip-build-env-abllg6kk/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.fgbio' is absent from the `packages` configuration. 2024-07-09T19:01:56,991 !! 2024-07-09T19:01:56,992 ******************************************************************************** 2024-07-09T19:01:56,993 ############################ 2024-07-09T19:01:56,993 # Package would be ignored # 2024-07-09T19:01:56,994 ############################ 2024-07-09T19:01:56,994 Python recognizes 'multiqc.modules.fgbio' as an importable package[^1], 2024-07-09T19:01:56,995 but it is absent from setuptools' `packages` configuration. 2024-07-09T19:01:56,996 This leads to an ambiguous overall configuration. If you want to distribute this 2024-07-09T19:01:56,996 package, please make sure that 'multiqc.modules.fgbio' is explicitly added 2024-07-09T19:01:56,997 to the `packages` configuration field. 2024-07-09T19:01:56,998 Alternatively, you can also rely on setuptools' discovery methods 2024-07-09T19:01:56,998 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-07-09T19:01:56,999 instead of `find_packages(...)`/`find:`). 2024-07-09T19:01:57,000 You can read more about "package discovery" on setuptools documentation page: 2024-07-09T19:01:57,001 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-07-09T19:01:57,002 If you don't want 'multiqc.modules.fgbio' to be distributed and are 2024-07-09T19:01:57,002 already explicitly excluding 'multiqc.modules.fgbio' via 2024-07-09T19:01:57,002 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-07-09T19:01:57,003 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-07-09T19:01:57,003 combination with a more fine grained `package-data` configuration. 2024-07-09T19:01:57,004 You can read more about "package data files" on setuptools documentation page: 2024-07-09T19:01:57,004 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-07-09T19:01:57,005 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-07-09T19:01:57,006 even if it does not contain any `.py` files. 2024-07-09T19:01:57,006 On the other hand, currently there is no concept of package data 2024-07-09T19:01:57,006 directory, all directories are treated like packages. 2024-07-09T19:01:57,007 ******************************************************************************** 2024-07-09T19:01:57,008 !! 2024-07-09T19:01:57,008 check.warn(importable) 2024-07-09T19:01:57,009 /tmp/pip-build-env-abllg6kk/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.filtlong' is absent from the `packages` configuration. 2024-07-09T19:01:57,009 !! 2024-07-09T19:01:57,010 ******************************************************************************** 2024-07-09T19:01:57,011 ############################ 2024-07-09T19:01:57,011 # Package would be ignored # 2024-07-09T19:01:57,012 ############################ 2024-07-09T19:01:57,012 Python recognizes 'multiqc.modules.filtlong' as an importable package[^1], 2024-07-09T19:01:57,013 but it is absent from setuptools' `packages` configuration. 2024-07-09T19:01:57,014 This leads to an ambiguous overall configuration. If you want to distribute this 2024-07-09T19:01:57,015 package, please make sure that 'multiqc.modules.filtlong' is explicitly added 2024-07-09T19:01:57,015 to the `packages` configuration field. 2024-07-09T19:01:57,016 Alternatively, you can also rely on setuptools' discovery methods 2024-07-09T19:01:57,017 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-07-09T19:01:57,017 instead of `find_packages(...)`/`find:`). 2024-07-09T19:01:57,018 You can read more about "package discovery" on setuptools documentation page: 2024-07-09T19:01:57,019 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-07-09T19:01:57,020 If you don't want 'multiqc.modules.filtlong' to be distributed and are 2024-07-09T19:01:57,020 already explicitly excluding 'multiqc.modules.filtlong' via 2024-07-09T19:01:57,021 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-07-09T19:01:57,021 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-07-09T19:01:57,021 combination with a more fine grained `package-data` configuration. 2024-07-09T19:01:57,023 You can read more about "package data files" on setuptools documentation page: 2024-07-09T19:01:57,024 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-07-09T19:01:57,025 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-07-09T19:01:57,026 even if it does not contain any `.py` files. 2024-07-09T19:01:57,027 On the other hand, currently there is no concept of package data 2024-07-09T19:01:57,027 directory, all directories are treated like packages. 2024-07-09T19:01:57,027 ******************************************************************************** 2024-07-09T19:01:57,028 !! 2024-07-09T19:01:57,029 check.warn(importable) 2024-07-09T19:01:57,029 /tmp/pip-build-env-abllg6kk/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.flash' is absent from the `packages` configuration. 2024-07-09T19:01:57,029 !! 2024-07-09T19:01:57,030 ******************************************************************************** 2024-07-09T19:01:57,030 ############################ 2024-07-09T19:01:57,031 # Package would be ignored # 2024-07-09T19:01:57,031 ############################ 2024-07-09T19:01:57,031 Python recognizes 'multiqc.modules.flash' as an importable package[^1], 2024-07-09T19:01:57,032 but it is absent from setuptools' `packages` configuration. 2024-07-09T19:01:57,032 This leads to an ambiguous overall configuration. If you want to distribute this 2024-07-09T19:01:57,033 package, please make sure that 'multiqc.modules.flash' is explicitly added 2024-07-09T19:01:57,033 to the `packages` configuration field. 2024-07-09T19:01:57,034 Alternatively, you can also rely on setuptools' discovery methods 2024-07-09T19:01:57,034 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-07-09T19:01:57,034 instead of `find_packages(...)`/`find:`). 2024-07-09T19:01:57,036 You can read more about "package discovery" on setuptools documentation page: 2024-07-09T19:01:57,037 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-07-09T19:01:57,038 If you don't want 'multiqc.modules.flash' to be distributed and are 2024-07-09T19:01:57,038 already explicitly excluding 'multiqc.modules.flash' via 2024-07-09T19:01:57,039 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-07-09T19:01:57,039 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-07-09T19:01:57,040 combination with a more fine grained `package-data` configuration. 2024-07-09T19:01:57,041 You can read more about "package data files" on setuptools documentation page: 2024-07-09T19:01:57,042 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-07-09T19:01:57,043 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-07-09T19:01:57,044 even if it does not contain any `.py` files. 2024-07-09T19:01:57,044 On the other hand, currently there is no concept of package data 2024-07-09T19:01:57,045 directory, all directories are treated like packages. 2024-07-09T19:01:57,045 ******************************************************************************** 2024-07-09T19:01:57,046 !! 2024-07-09T19:01:57,047 check.warn(importable) 2024-07-09T19:01:57,047 /tmp/pip-build-env-abllg6kk/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.flexbar' is absent from the `packages` configuration. 2024-07-09T19:01:57,048 !! 2024-07-09T19:01:57,049 ******************************************************************************** 2024-07-09T19:01:57,049 ############################ 2024-07-09T19:01:57,050 # Package would be ignored # 2024-07-09T19:01:57,050 ############################ 2024-07-09T19:01:57,051 Python recognizes 'multiqc.modules.flexbar' as an importable package[^1], 2024-07-09T19:01:57,051 but it is absent from setuptools' `packages` configuration. 2024-07-09T19:01:57,052 This leads to an ambiguous overall configuration. If you want to distribute this 2024-07-09T19:01:57,053 package, please make sure that 'multiqc.modules.flexbar' is explicitly added 2024-07-09T19:01:57,053 to the `packages` configuration field. 2024-07-09T19:01:57,054 Alternatively, you can also rely on setuptools' discovery methods 2024-07-09T19:01:57,054 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-07-09T19:01:57,055 instead of `find_packages(...)`/`find:`). 2024-07-09T19:01:57,056 You can read more about "package discovery" on setuptools documentation page: 2024-07-09T19:01:57,057 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-07-09T19:01:57,057 If you don't want 'multiqc.modules.flexbar' to be distributed and are 2024-07-09T19:01:57,058 already explicitly excluding 'multiqc.modules.flexbar' via 2024-07-09T19:01:57,058 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-07-09T19:01:57,058 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-07-09T19:01:57,059 combination with a more fine grained `package-data` configuration. 2024-07-09T19:01:57,059 You can read more about "package data files" on setuptools documentation page: 2024-07-09T19:01:57,060 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-07-09T19:01:57,061 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-07-09T19:01:57,062 even if it does not contain any `.py` files. 2024-07-09T19:01:57,062 On the other hand, currently there is no concept of package data 2024-07-09T19:01:57,063 directory, all directories are treated like packages. 2024-07-09T19:01:57,063 ******************************************************************************** 2024-07-09T19:01:57,064 !! 2024-07-09T19:01:57,065 check.warn(importable) 2024-07-09T19:01:57,066 /tmp/pip-build-env-abllg6kk/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.freyja' is absent from the `packages` configuration. 2024-07-09T19:01:57,066 !! 2024-07-09T19:01:57,067 ******************************************************************************** 2024-07-09T19:01:57,068 ############################ 2024-07-09T19:01:57,068 # Package would be ignored # 2024-07-09T19:01:57,069 ############################ 2024-07-09T19:01:57,069 Python recognizes 'multiqc.modules.freyja' as an importable package[^1], 2024-07-09T19:01:57,070 but it is absent from setuptools' `packages` configuration. 2024-07-09T19:01:57,070 This leads to an ambiguous overall configuration. If you want to distribute this 2024-07-09T19:01:57,071 package, please make sure that 'multiqc.modules.freyja' is explicitly added 2024-07-09T19:01:57,071 to the `packages` configuration field. 2024-07-09T19:01:57,072 Alternatively, you can also rely on setuptools' discovery methods 2024-07-09T19:01:57,073 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-07-09T19:01:57,073 instead of `find_packages(...)`/`find:`). 2024-07-09T19:01:57,074 You can read more about "package discovery" on setuptools documentation page: 2024-07-09T19:01:57,075 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-07-09T19:01:57,076 If you don't want 'multiqc.modules.freyja' to be distributed and are 2024-07-09T19:01:57,077 already explicitly excluding 'multiqc.modules.freyja' via 2024-07-09T19:01:57,077 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-07-09T19:01:57,078 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-07-09T19:01:57,078 combination with a more fine grained `package-data` configuration. 2024-07-09T19:01:57,079 You can read more about "package data files" on setuptools documentation page: 2024-07-09T19:01:57,080 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-07-09T19:01:57,080 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-07-09T19:01:57,081 even if it does not contain any `.py` files. 2024-07-09T19:01:57,081 On the other hand, currently there is no concept of package data 2024-07-09T19:01:57,081 directory, all directories are treated like packages. 2024-07-09T19:01:57,082 ******************************************************************************** 2024-07-09T19:01:57,082 !! 2024-07-09T19:01:57,083 check.warn(importable) 2024-07-09T19:01:57,083 /tmp/pip-build-env-abllg6kk/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.gatk' is absent from the `packages` configuration. 2024-07-09T19:01:57,083 !! 2024-07-09T19:01:57,084 ******************************************************************************** 2024-07-09T19:01:57,084 ############################ 2024-07-09T19:01:57,085 # Package would be ignored # 2024-07-09T19:01:57,085 ############################ 2024-07-09T19:01:57,086 Python recognizes 'multiqc.modules.gatk' as an importable package[^1], 2024-07-09T19:01:57,086 but it is absent from setuptools' `packages` configuration. 2024-07-09T19:01:57,087 This leads to an ambiguous overall configuration. If you want to distribute this 2024-07-09T19:01:57,087 package, please make sure that 'multiqc.modules.gatk' is explicitly added 2024-07-09T19:01:57,088 to the `packages` configuration field. 2024-07-09T19:01:57,089 Alternatively, you can also rely on setuptools' discovery methods 2024-07-09T19:01:57,090 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-07-09T19:01:57,090 instead of `find_packages(...)`/`find:`). 2024-07-09T19:01:57,091 You can read more about "package discovery" on setuptools documentation page: 2024-07-09T19:01:57,092 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-07-09T19:01:57,093 If you don't want 'multiqc.modules.gatk' to be distributed and are 2024-07-09T19:01:57,094 already explicitly excluding 'multiqc.modules.gatk' via 2024-07-09T19:01:57,094 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-07-09T19:01:57,095 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-07-09T19:01:57,096 combination with a more fine grained `package-data` configuration. 2024-07-09T19:01:57,096 You can read more about "package data files" on setuptools documentation page: 2024-07-09T19:01:57,097 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-07-09T19:01:57,099 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-07-09T19:01:57,099 even if it does not contain any `.py` files. 2024-07-09T19:01:57,100 On the other hand, currently there is no concept of package data 2024-07-09T19:01:57,100 directory, all directories are treated like packages. 2024-07-09T19:01:57,101 ******************************************************************************** 2024-07-09T19:01:57,102 !! 2024-07-09T19:01:57,102 check.warn(importable) 2024-07-09T19:01:57,103 /tmp/pip-build-env-abllg6kk/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.gffcompare' is absent from the `packages` configuration. 2024-07-09T19:01:57,103 !! 2024-07-09T19:01:57,104 ******************************************************************************** 2024-07-09T19:01:57,104 ############################ 2024-07-09T19:01:57,105 # Package would be ignored # 2024-07-09T19:01:57,105 ############################ 2024-07-09T19:01:57,105 Python recognizes 'multiqc.modules.gffcompare' as an importable package[^1], 2024-07-09T19:01:57,106 but it is absent from setuptools' `packages` configuration. 2024-07-09T19:01:57,107 This leads to an ambiguous overall configuration. If you want to distribute this 2024-07-09T19:01:57,107 package, please make sure that 'multiqc.modules.gffcompare' is explicitly added 2024-07-09T19:01:57,107 to the `packages` configuration field. 2024-07-09T19:01:57,108 Alternatively, you can also rely on setuptools' discovery methods 2024-07-09T19:01:57,108 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-07-09T19:01:57,109 instead of `find_packages(...)`/`find:`). 2024-07-09T19:01:57,109 You can read more about "package discovery" on setuptools documentation page: 2024-07-09T19:01:57,110 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-07-09T19:01:57,111 If you don't want 'multiqc.modules.gffcompare' to be distributed and are 2024-07-09T19:01:57,111 already explicitly excluding 'multiqc.modules.gffcompare' via 2024-07-09T19:01:57,111 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-07-09T19:01:57,112 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-07-09T19:01:57,112 combination with a more fine grained `package-data` configuration. 2024-07-09T19:01:57,113 You can read more about "package data files" on setuptools documentation page: 2024-07-09T19:01:57,114 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-07-09T19:01:57,116 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-07-09T19:01:57,116 even if it does not contain any `.py` files. 2024-07-09T19:01:57,117 On the other hand, currently there is no concept of package data 2024-07-09T19:01:57,117 directory, all directories are treated like packages. 2024-07-09T19:01:57,118 ******************************************************************************** 2024-07-09T19:01:57,119 !! 2024-07-09T19:01:57,119 check.warn(importable) 2024-07-09T19:01:57,120 /tmp/pip-build-env-abllg6kk/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.glimpse' is absent from the `packages` configuration. 2024-07-09T19:01:57,121 !! 2024-07-09T19:01:57,122 ******************************************************************************** 2024-07-09T19:01:57,122 ############################ 2024-07-09T19:01:57,122 # Package would be ignored # 2024-07-09T19:01:57,123 ############################ 2024-07-09T19:01:57,123 Python recognizes 'multiqc.modules.glimpse' as an importable package[^1], 2024-07-09T19:01:57,124 but it is absent from setuptools' `packages` configuration. 2024-07-09T19:01:57,125 This leads to an ambiguous overall configuration. If you want to distribute this 2024-07-09T19:01:57,125 package, please make sure that 'multiqc.modules.glimpse' is explicitly added 2024-07-09T19:01:57,126 to the `packages` configuration field. 2024-07-09T19:01:57,127 Alternatively, you can also rely on setuptools' discovery methods 2024-07-09T19:01:57,128 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-07-09T19:01:57,128 instead of `find_packages(...)`/`find:`). 2024-07-09T19:01:57,129 You can read more about "package discovery" on setuptools documentation page: 2024-07-09T19:01:57,131 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-07-09T19:01:57,131 If you don't want 'multiqc.modules.glimpse' to be distributed and are 2024-07-09T19:01:57,132 already explicitly excluding 'multiqc.modules.glimpse' via 2024-07-09T19:01:57,132 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-07-09T19:01:57,132 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-07-09T19:01:57,133 combination with a more fine grained `package-data` configuration. 2024-07-09T19:01:57,133 You can read more about "package data files" on setuptools documentation page: 2024-07-09T19:01:57,134 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-07-09T19:01:57,135 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-07-09T19:01:57,135 even if it does not contain any `.py` files. 2024-07-09T19:01:57,136 On the other hand, currently there is no concept of package data 2024-07-09T19:01:57,136 directory, all directories are treated like packages. 2024-07-09T19:01:57,136 ******************************************************************************** 2024-07-09T19:01:57,137 !! 2024-07-09T19:01:57,137 check.warn(importable) 2024-07-09T19:01:57,138 /tmp/pip-build-env-abllg6kk/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.goleft_indexcov' is absent from the `packages` configuration. 2024-07-09T19:01:57,138 !! 2024-07-09T19:01:57,139 ******************************************************************************** 2024-07-09T19:01:57,140 ############################ 2024-07-09T19:01:57,140 # Package would be ignored # 2024-07-09T19:01:57,141 ############################ 2024-07-09T19:01:57,141 Python recognizes 'multiqc.modules.goleft_indexcov' as an importable package[^1], 2024-07-09T19:01:57,142 but it is absent from setuptools' `packages` configuration. 2024-07-09T19:01:57,143 This leads to an ambiguous overall configuration. If you want to distribute this 2024-07-09T19:01:57,143 package, please make sure that 'multiqc.modules.goleft_indexcov' is explicitly added 2024-07-09T19:01:57,144 to the `packages` configuration field. 2024-07-09T19:01:57,145 Alternatively, you can also rely on setuptools' discovery methods 2024-07-09T19:01:57,145 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-07-09T19:01:57,146 instead of `find_packages(...)`/`find:`). 2024-07-09T19:01:57,147 You can read more about "package discovery" on setuptools documentation page: 2024-07-09T19:01:57,148 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-07-09T19:01:57,149 If you don't want 'multiqc.modules.goleft_indexcov' to be distributed and are 2024-07-09T19:01:57,149 already explicitly excluding 'multiqc.modules.goleft_indexcov' via 2024-07-09T19:01:57,149 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-07-09T19:01:57,150 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-07-09T19:01:57,150 combination with a more fine grained `package-data` configuration. 2024-07-09T19:01:57,151 You can read more about "package data files" on setuptools documentation page: 2024-07-09T19:01:57,152 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-07-09T19:01:57,154 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-07-09T19:01:57,154 even if it does not contain any `.py` files. 2024-07-09T19:01:57,155 On the other hand, currently there is no concept of package data 2024-07-09T19:01:57,155 directory, all directories are treated like packages. 2024-07-09T19:01:57,156 ******************************************************************************** 2024-07-09T19:01:57,157 !! 2024-07-09T19:01:57,157 check.warn(importable) 2024-07-09T19:01:57,158 /tmp/pip-build-env-abllg6kk/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.gopeaks' is absent from the `packages` configuration. 2024-07-09T19:01:57,158 !! 2024-07-09T19:01:57,159 ******************************************************************************** 2024-07-09T19:01:57,159 ############################ 2024-07-09T19:01:57,159 # Package would be ignored # 2024-07-09T19:01:57,160 ############################ 2024-07-09T19:01:57,160 Python recognizes 'multiqc.modules.gopeaks' as an importable package[^1], 2024-07-09T19:01:57,160 but it is absent from setuptools' `packages` configuration. 2024-07-09T19:01:57,161 This leads to an ambiguous overall configuration. If you want to distribute this 2024-07-09T19:01:57,161 package, please make sure that 'multiqc.modules.gopeaks' is explicitly added 2024-07-09T19:01:57,162 to the `packages` configuration field. 2024-07-09T19:01:57,162 Alternatively, you can also rely on setuptools' discovery methods 2024-07-09T19:01:57,163 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-07-09T19:01:57,163 instead of `find_packages(...)`/`find:`). 2024-07-09T19:01:57,164 You can read more about "package discovery" on setuptools documentation page: 2024-07-09T19:01:57,165 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-07-09T19:01:57,166 If you don't want 'multiqc.modules.gopeaks' to be distributed and are 2024-07-09T19:01:57,167 already explicitly excluding 'multiqc.modules.gopeaks' via 2024-07-09T19:01:57,167 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-07-09T19:01:57,168 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-07-09T19:01:57,169 combination with a more fine grained `package-data` configuration. 2024-07-09T19:01:57,170 You can read more about "package data files" on setuptools documentation page: 2024-07-09T19:01:57,171 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-07-09T19:01:57,172 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-07-09T19:01:57,173 even if it does not contain any `.py` files. 2024-07-09T19:01:57,173 On the other hand, currently there is no concept of package data 2024-07-09T19:01:57,174 directory, all directories are treated like packages. 2024-07-09T19:01:57,174 ******************************************************************************** 2024-07-09T19:01:57,175 !! 2024-07-09T19:01:57,176 check.warn(importable) 2024-07-09T19:01:57,176 /tmp/pip-build-env-abllg6kk/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.happy' is absent from the `packages` configuration. 2024-07-09T19:01:57,177 !! 2024-07-09T19:01:57,178 ******************************************************************************** 2024-07-09T19:01:57,178 ############################ 2024-07-09T19:01:57,178 # Package would be ignored # 2024-07-09T19:01:57,179 ############################ 2024-07-09T19:01:57,179 Python recognizes 'multiqc.modules.happy' as an importable package[^1], 2024-07-09T19:01:57,180 but it is absent from setuptools' `packages` configuration. 2024-07-09T19:01:57,181 This leads to an ambiguous overall configuration. If you want to distribute this 2024-07-09T19:01:57,182 package, please make sure that 'multiqc.modules.happy' is explicitly added 2024-07-09T19:01:57,182 to the `packages` configuration field. 2024-07-09T19:01:57,183 Alternatively, you can also rely on setuptools' discovery methods 2024-07-09T19:01:57,184 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-07-09T19:01:57,184 instead of `find_packages(...)`/`find:`). 2024-07-09T19:01:57,185 You can read more about "package discovery" on setuptools documentation page: 2024-07-09T19:01:57,185 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-07-09T19:01:57,186 If you don't want 'multiqc.modules.happy' to be distributed and are 2024-07-09T19:01:57,186 already explicitly excluding 'multiqc.modules.happy' via 2024-07-09T19:01:57,187 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-07-09T19:01:57,187 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-07-09T19:01:57,187 combination with a more fine grained `package-data` configuration. 2024-07-09T19:01:57,188 You can read more about "package data files" on setuptools documentation page: 2024-07-09T19:01:57,189 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-07-09T19:01:57,190 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-07-09T19:01:57,190 even if it does not contain any `.py` files. 2024-07-09T19:01:57,191 On the other hand, currently there is no concept of package data 2024-07-09T19:01:57,191 directory, all directories are treated like packages. 2024-07-09T19:01:57,191 ******************************************************************************** 2024-07-09T19:01:57,193 !! 2024-07-09T19:01:57,193 check.warn(importable) 2024-07-09T19:01:57,194 /tmp/pip-build-env-abllg6kk/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.hicexplorer' is absent from the `packages` configuration. 2024-07-09T19:01:57,194 !! 2024-07-09T19:01:57,195 ******************************************************************************** 2024-07-09T19:01:57,196 ############################ 2024-07-09T19:01:57,197 # Package would be ignored # 2024-07-09T19:01:57,197 ############################ 2024-07-09T19:01:57,198 Python recognizes 'multiqc.modules.hicexplorer' as an importable package[^1], 2024-07-09T19:01:57,199 but it is absent from setuptools' `packages` configuration. 2024-07-09T19:01:57,200 This leads to an ambiguous overall configuration. If you want to distribute this 2024-07-09T19:01:57,200 package, please make sure that 'multiqc.modules.hicexplorer' is explicitly added 2024-07-09T19:01:57,201 to the `packages` configuration field. 2024-07-09T19:01:57,202 Alternatively, you can also rely on setuptools' discovery methods 2024-07-09T19:01:57,202 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-07-09T19:01:57,203 instead of `find_packages(...)`/`find:`). 2024-07-09T19:01:57,203 You can read more about "package discovery" on setuptools documentation page: 2024-07-09T19:01:57,205 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-07-09T19:01:57,206 If you don't want 'multiqc.modules.hicexplorer' to be distributed and are 2024-07-09T19:01:57,206 already explicitly excluding 'multiqc.modules.hicexplorer' via 2024-07-09T19:01:57,207 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-07-09T19:01:57,207 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-07-09T19:01:57,208 combination with a more fine grained `package-data` configuration. 2024-07-09T19:01:57,209 You can read more about "package data files" on setuptools documentation page: 2024-07-09T19:01:57,210 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-07-09T19:01:57,211 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-07-09T19:01:57,211 even if it does not contain any `.py` files. 2024-07-09T19:01:57,212 On the other hand, currently there is no concept of package data 2024-07-09T19:01:57,212 directory, all directories are treated like packages. 2024-07-09T19:01:57,213 ******************************************************************************** 2024-07-09T19:01:57,213 !! 2024-07-09T19:01:57,213 check.warn(importable) 2024-07-09T19:01:57,214 /tmp/pip-build-env-abllg6kk/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.hicpro' is absent from the `packages` configuration. 2024-07-09T19:01:57,214 !! 2024-07-09T19:01:57,215 ******************************************************************************** 2024-07-09T19:01:57,215 ############################ 2024-07-09T19:01:57,216 # Package would be ignored # 2024-07-09T19:01:57,216 ############################ 2024-07-09T19:01:57,216 Python recognizes 'multiqc.modules.hicpro' as an importable package[^1], 2024-07-09T19:01:57,217 but it is absent from setuptools' `packages` configuration. 2024-07-09T19:01:57,217 This leads to an ambiguous overall configuration. If you want to distribute this 2024-07-09T19:01:57,218 package, please make sure that 'multiqc.modules.hicpro' is explicitly added 2024-07-09T19:01:57,218 to the `packages` configuration field. 2024-07-09T19:01:57,219 Alternatively, you can also rely on setuptools' discovery methods 2024-07-09T19:01:57,220 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-07-09T19:01:57,220 instead of `find_packages(...)`/`find:`). 2024-07-09T19:01:57,221 You can read more about "package discovery" on setuptools documentation page: 2024-07-09T19:01:57,222 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-07-09T19:01:57,223 If you don't want 'multiqc.modules.hicpro' to be distributed and are 2024-07-09T19:01:57,224 already explicitly excluding 'multiqc.modules.hicpro' via 2024-07-09T19:01:57,224 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-07-09T19:01:57,225 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-07-09T19:01:57,226 combination with a more fine grained `package-data` configuration. 2024-07-09T19:01:57,227 You can read more about "package data files" on setuptools documentation page: 2024-07-09T19:01:57,228 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-07-09T19:01:57,229 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-07-09T19:01:57,230 even if it does not contain any `.py` files. 2024-07-09T19:01:57,230 On the other hand, currently there is no concept of package data 2024-07-09T19:01:57,230 directory, all directories are treated like packages. 2024-07-09T19:01:57,231 ******************************************************************************** 2024-07-09T19:01:57,232 !! 2024-07-09T19:01:57,233 check.warn(importable) 2024-07-09T19:01:57,233 /tmp/pip-build-env-abllg6kk/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.hicup' is absent from the `packages` configuration. 2024-07-09T19:01:57,233 !! 2024-07-09T19:01:57,235 ******************************************************************************** 2024-07-09T19:01:57,235 ############################ 2024-07-09T19:01:57,236 # Package would be ignored # 2024-07-09T19:01:57,236 ############################ 2024-07-09T19:01:57,237 Python recognizes 'multiqc.modules.hicup' as an importable package[^1], 2024-07-09T19:01:57,237 but it is absent from setuptools' `packages` configuration. 2024-07-09T19:01:57,238 This leads to an ambiguous overall configuration. If you want to distribute this 2024-07-09T19:01:57,238 package, please make sure that 'multiqc.modules.hicup' is explicitly added 2024-07-09T19:01:57,238 to the `packages` configuration field. 2024-07-09T19:01:57,239 Alternatively, you can also rely on setuptools' discovery methods 2024-07-09T19:01:57,239 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-07-09T19:01:57,240 instead of `find_packages(...)`/`find:`). 2024-07-09T19:01:57,241 You can read more about "package discovery" on setuptools documentation page: 2024-07-09T19:01:57,241 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-07-09T19:01:57,242 If you don't want 'multiqc.modules.hicup' to be distributed and are 2024-07-09T19:01:57,242 already explicitly excluding 'multiqc.modules.hicup' via 2024-07-09T19:01:57,242 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-07-09T19:01:57,243 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-07-09T19:01:57,243 combination with a more fine grained `package-data` configuration. 2024-07-09T19:01:57,244 You can read more about "package data files" on setuptools documentation page: 2024-07-09T19:01:57,245 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-07-09T19:01:57,246 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-07-09T19:01:57,247 even if it does not contain any `.py` files. 2024-07-09T19:01:57,247 On the other hand, currently there is no concept of package data 2024-07-09T19:01:57,248 directory, all directories are treated like packages. 2024-07-09T19:01:57,249 ******************************************************************************** 2024-07-09T19:01:57,250 !! 2024-07-09T19:01:57,250 check.warn(importable) 2024-07-09T19:01:57,251 /tmp/pip-build-env-abllg6kk/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.hifiasm' is absent from the `packages` configuration. 2024-07-09T19:01:57,251 !! 2024-07-09T19:01:57,252 ******************************************************************************** 2024-07-09T19:01:57,253 ############################ 2024-07-09T19:01:57,254 # Package would be ignored # 2024-07-09T19:01:57,254 ############################ 2024-07-09T19:01:57,254 Python recognizes 'multiqc.modules.hifiasm' as an importable package[^1], 2024-07-09T19:01:57,255 but it is absent from setuptools' `packages` configuration. 2024-07-09T19:01:57,256 This leads to an ambiguous overall configuration. If you want to distribute this 2024-07-09T19:01:57,256 package, please make sure that 'multiqc.modules.hifiasm' is explicitly added 2024-07-09T19:01:57,257 to the `packages` configuration field. 2024-07-09T19:01:57,258 Alternatively, you can also rely on setuptools' discovery methods 2024-07-09T19:01:57,258 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-07-09T19:01:57,259 instead of `find_packages(...)`/`find:`). 2024-07-09T19:01:57,260 You can read more about "package discovery" on setuptools documentation page: 2024-07-09T19:01:57,261 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-07-09T19:01:57,262 If you don't want 'multiqc.modules.hifiasm' to be distributed and are 2024-07-09T19:01:57,262 already explicitly excluding 'multiqc.modules.hifiasm' via 2024-07-09T19:01:57,263 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-07-09T19:01:57,263 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-07-09T19:01:57,264 combination with a more fine grained `package-data` configuration. 2024-07-09T19:01:57,264 You can read more about "package data files" on setuptools documentation page: 2024-07-09T19:01:57,265 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-07-09T19:01:57,266 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-07-09T19:01:57,266 even if it does not contain any `.py` files. 2024-07-09T19:01:57,267 On the other hand, currently there is no concept of package data 2024-07-09T19:01:57,267 directory, all directories are treated like packages. 2024-07-09T19:01:57,267 ******************************************************************************** 2024-07-09T19:01:57,268 !! 2024-07-09T19:01:57,268 check.warn(importable) 2024-07-09T19:01:57,269 /tmp/pip-build-env-abllg6kk/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.hisat2' is absent from the `packages` configuration. 2024-07-09T19:01:57,269 !! 2024-07-09T19:01:57,270 ******************************************************************************** 2024-07-09T19:01:57,271 ############################ 2024-07-09T19:01:57,271 # Package would be ignored # 2024-07-09T19:01:57,272 ############################ 2024-07-09T19:01:57,272 Python recognizes 'multiqc.modules.hisat2' as an importable package[^1], 2024-07-09T19:01:57,273 but it is absent from setuptools' `packages` configuration. 2024-07-09T19:01:57,274 This leads to an ambiguous overall configuration. If you want to distribute this 2024-07-09T19:01:57,274 package, please make sure that 'multiqc.modules.hisat2' is explicitly added 2024-07-09T19:01:57,275 to the `packages` configuration field. 2024-07-09T19:01:57,276 Alternatively, you can also rely on setuptools' discovery methods 2024-07-09T19:01:57,276 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-07-09T19:01:57,277 instead of `find_packages(...)`/`find:`). 2024-07-09T19:01:57,278 You can read more about "package discovery" on setuptools documentation page: 2024-07-09T19:01:57,279 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-07-09T19:01:57,280 If you don't want 'multiqc.modules.hisat2' to be distributed and are 2024-07-09T19:01:57,281 already explicitly excluding 'multiqc.modules.hisat2' via 2024-07-09T19:01:57,281 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-07-09T19:01:57,282 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-07-09T19:01:57,282 combination with a more fine grained `package-data` configuration. 2024-07-09T19:01:57,283 You can read more about "package data files" on setuptools documentation page: 2024-07-09T19:01:57,284 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-07-09T19:01:57,285 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-07-09T19:01:57,286 even if it does not contain any `.py` files. 2024-07-09T19:01:57,286 On the other hand, currently there is no concept of package data 2024-07-09T19:01:57,287 directory, all directories are treated like packages. 2024-07-09T19:01:57,287 ******************************************************************************** 2024-07-09T19:01:57,288 !! 2024-07-09T19:01:57,289 check.warn(importable) 2024-07-09T19:01:57,290 /tmp/pip-build-env-abllg6kk/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.homer' is absent from the `packages` configuration. 2024-07-09T19:01:57,290 !! 2024-07-09T19:01:57,291 ******************************************************************************** 2024-07-09T19:01:57,291 ############################ 2024-07-09T19:01:57,292 # Package would be ignored # 2024-07-09T19:01:57,292 ############################ 2024-07-09T19:01:57,293 Python recognizes 'multiqc.modules.homer' as an importable package[^1], 2024-07-09T19:01:57,293 but it is absent from setuptools' `packages` configuration. 2024-07-09T19:01:57,293 This leads to an ambiguous overall configuration. If you want to distribute this 2024-07-09T19:01:57,294 package, please make sure that 'multiqc.modules.homer' is explicitly added 2024-07-09T19:01:57,294 to the `packages` configuration field. 2024-07-09T19:01:57,295 Alternatively, you can also rely on setuptools' discovery methods 2024-07-09T19:01:57,295 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-07-09T19:01:57,296 instead of `find_packages(...)`/`find:`). 2024-07-09T19:01:57,296 You can read more about "package discovery" on setuptools documentation page: 2024-07-09T19:01:57,297 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-07-09T19:01:57,298 If you don't want 'multiqc.modules.homer' to be distributed and are 2024-07-09T19:01:57,298 already explicitly excluding 'multiqc.modules.homer' via 2024-07-09T19:01:57,298 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-07-09T19:01:57,299 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-07-09T19:01:57,300 combination with a more fine grained `package-data` configuration. 2024-07-09T19:01:57,301 You can read more about "package data files" on setuptools documentation page: 2024-07-09T19:01:57,302 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-07-09T19:01:57,303 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-07-09T19:01:57,304 even if it does not contain any `.py` files. 2024-07-09T19:01:57,304 On the other hand, currently there is no concept of package data 2024-07-09T19:01:57,305 directory, all directories are treated like packages. 2024-07-09T19:01:57,305 ******************************************************************************** 2024-07-09T19:01:57,307 !! 2024-07-09T19:01:57,307 check.warn(importable) 2024-07-09T19:01:57,307 /tmp/pip-build-env-abllg6kk/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.hops' is absent from the `packages` configuration. 2024-07-09T19:01:57,308 !! 2024-07-09T19:01:57,309 ******************************************************************************** 2024-07-09T19:01:57,309 ############################ 2024-07-09T19:01:57,310 # Package would be ignored # 2024-07-09T19:01:57,310 ############################ 2024-07-09T19:01:57,311 Python recognizes 'multiqc.modules.hops' as an importable package[^1], 2024-07-09T19:01:57,311 but it is absent from setuptools' `packages` configuration. 2024-07-09T19:01:57,312 This leads to an ambiguous overall configuration. If you want to distribute this 2024-07-09T19:01:57,313 package, please make sure that 'multiqc.modules.hops' is explicitly added 2024-07-09T19:01:57,313 to the `packages` configuration field. 2024-07-09T19:01:57,314 Alternatively, you can also rely on setuptools' discovery methods 2024-07-09T19:01:57,315 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-07-09T19:01:57,315 instead of `find_packages(...)`/`find:`). 2024-07-09T19:01:57,317 You can read more about "package discovery" on setuptools documentation page: 2024-07-09T19:01:57,317 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-07-09T19:01:57,318 If you don't want 'multiqc.modules.hops' to be distributed and are 2024-07-09T19:01:57,318 already explicitly excluding 'multiqc.modules.hops' via 2024-07-09T19:01:57,318 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-07-09T19:01:57,319 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-07-09T19:01:57,319 combination with a more fine grained `package-data` configuration. 2024-07-09T19:01:57,320 You can read more about "package data files" on setuptools documentation page: 2024-07-09T19:01:57,320 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-07-09T19:01:57,321 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-07-09T19:01:57,322 even if it does not contain any `.py` files. 2024-07-09T19:01:57,322 On the other hand, currently there is no concept of package data 2024-07-09T19:01:57,323 directory, all directories are treated like packages. 2024-07-09T19:01:57,323 ******************************************************************************** 2024-07-09T19:01:57,324 !! 2024-07-09T19:01:57,324 check.warn(importable) 2024-07-09T19:01:57,325 /tmp/pip-build-env-abllg6kk/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.hostile' is absent from the `packages` configuration. 2024-07-09T19:01:57,325 !! 2024-07-09T19:01:57,326 ******************************************************************************** 2024-07-09T19:01:57,326 ############################ 2024-07-09T19:01:57,327 # Package would be ignored # 2024-07-09T19:01:57,328 ############################ 2024-07-09T19:01:57,328 Python recognizes 'multiqc.modules.hostile' as an importable package[^1], 2024-07-09T19:01:57,329 but it is absent from setuptools' `packages` configuration. 2024-07-09T19:01:57,329 This leads to an ambiguous overall configuration. If you want to distribute this 2024-07-09T19:01:57,330 package, please make sure that 'multiqc.modules.hostile' is explicitly added 2024-07-09T19:01:57,331 to the `packages` configuration field. 2024-07-09T19:01:57,332 Alternatively, you can also rely on setuptools' discovery methods 2024-07-09T19:01:57,332 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-07-09T19:01:57,333 instead of `find_packages(...)`/`find:`). 2024-07-09T19:01:57,334 You can read more about "package discovery" on setuptools documentation page: 2024-07-09T19:01:57,334 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-07-09T19:01:57,335 If you don't want 'multiqc.modules.hostile' to be distributed and are 2024-07-09T19:01:57,336 already explicitly excluding 'multiqc.modules.hostile' via 2024-07-09T19:01:57,336 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-07-09T19:01:57,337 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-07-09T19:01:57,337 combination with a more fine grained `package-data` configuration. 2024-07-09T19:01:57,338 You can read more about "package data files" on setuptools documentation page: 2024-07-09T19:01:57,339 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-07-09T19:01:57,341 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-07-09T19:01:57,341 even if it does not contain any `.py` files. 2024-07-09T19:01:57,342 On the other hand, currently there is no concept of package data 2024-07-09T19:01:57,342 directory, all directories are treated like packages. 2024-07-09T19:01:57,343 ******************************************************************************** 2024-07-09T19:01:57,344 !! 2024-07-09T19:01:57,344 check.warn(importable) 2024-07-09T19:01:57,345 /tmp/pip-build-env-abllg6kk/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.htseq' is absent from the `packages` configuration. 2024-07-09T19:01:57,345 !! 2024-07-09T19:01:57,346 ******************************************************************************** 2024-07-09T19:01:57,346 ############################ 2024-07-09T19:01:57,347 # Package would be ignored # 2024-07-09T19:01:57,347 ############################ 2024-07-09T19:01:57,347 Python recognizes 'multiqc.modules.htseq' as an importable package[^1], 2024-07-09T19:01:57,348 but it is absent from setuptools' `packages` configuration. 2024-07-09T19:01:57,349 This leads to an ambiguous overall configuration. If you want to distribute this 2024-07-09T19:01:57,349 package, please make sure that 'multiqc.modules.htseq' is explicitly added 2024-07-09T19:01:57,349 to the `packages` configuration field. 2024-07-09T19:01:57,350 Alternatively, you can also rely on setuptools' discovery methods 2024-07-09T19:01:57,350 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-07-09T19:01:57,351 instead of `find_packages(...)`/`find:`). 2024-07-09T19:01:57,352 You can read more about "package discovery" on setuptools documentation page: 2024-07-09T19:01:57,353 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-07-09T19:01:57,354 If you don't want 'multiqc.modules.htseq' to be distributed and are 2024-07-09T19:01:57,354 already explicitly excluding 'multiqc.modules.htseq' via 2024-07-09T19:01:57,355 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-07-09T19:01:57,356 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-07-09T19:01:57,356 combination with a more fine grained `package-data` configuration. 2024-07-09T19:01:57,357 You can read more about "package data files" on setuptools documentation page: 2024-07-09T19:01:57,358 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-07-09T19:01:57,360 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-07-09T19:01:57,361 even if it does not contain any `.py` files. 2024-07-09T19:01:57,361 On the other hand, currently there is no concept of package data 2024-07-09T19:01:57,362 directory, all directories are treated like packages. 2024-07-09T19:01:57,362 ******************************************************************************** 2024-07-09T19:01:57,363 !! 2024-07-09T19:01:57,363 check.warn(importable) 2024-07-09T19:01:57,364 /tmp/pip-build-env-abllg6kk/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.humid' is absent from the `packages` configuration. 2024-07-09T19:01:57,364 !! 2024-07-09T19:01:57,365 ******************************************************************************** 2024-07-09T19:01:57,366 ############################ 2024-07-09T19:01:57,366 # Package would be ignored # 2024-07-09T19:01:57,367 ############################ 2024-07-09T19:01:57,368 Python recognizes 'multiqc.modules.humid' as an importable package[^1], 2024-07-09T19:01:57,368 but it is absent from setuptools' `packages` configuration. 2024-07-09T19:01:57,369 This leads to an ambiguous overall configuration. If you want to distribute this 2024-07-09T19:01:57,370 package, please make sure that 'multiqc.modules.humid' is explicitly added 2024-07-09T19:01:57,371 to the `packages` configuration field. 2024-07-09T19:01:57,371 Alternatively, you can also rely on setuptools' discovery methods 2024-07-09T19:01:57,372 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-07-09T19:01:57,372 instead of `find_packages(...)`/`find:`). 2024-07-09T19:01:57,373 You can read more about "package discovery" on setuptools documentation page: 2024-07-09T19:01:57,373 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-07-09T19:01:57,374 If you don't want 'multiqc.modules.humid' to be distributed and are 2024-07-09T19:01:57,374 already explicitly excluding 'multiqc.modules.humid' via 2024-07-09T19:01:57,375 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-07-09T19:01:57,375 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-07-09T19:01:57,375 combination with a more fine grained `package-data` configuration. 2024-07-09T19:01:57,376 You can read more about "package data files" on setuptools documentation page: 2024-07-09T19:01:57,377 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-07-09T19:01:57,378 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-07-09T19:01:57,378 even if it does not contain any `.py` files. 2024-07-09T19:01:57,379 On the other hand, currently there is no concept of package data 2024-07-09T19:01:57,379 directory, all directories are treated like packages. 2024-07-09T19:01:57,380 ******************************************************************************** 2024-07-09T19:01:57,381 !! 2024-07-09T19:01:57,382 check.warn(importable) 2024-07-09T19:01:57,382 /tmp/pip-build-env-abllg6kk/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.interop' is absent from the `packages` configuration. 2024-07-09T19:01:57,383 !! 2024-07-09T19:01:57,384 ******************************************************************************** 2024-07-09T19:01:57,385 ############################ 2024-07-09T19:01:57,385 # Package would be ignored # 2024-07-09T19:01:57,386 ############################ 2024-07-09T19:01:57,386 Python recognizes 'multiqc.modules.interop' as an importable package[^1], 2024-07-09T19:01:57,387 but it is absent from setuptools' `packages` configuration. 2024-07-09T19:01:57,388 This leads to an ambiguous overall configuration. If you want to distribute this 2024-07-09T19:01:57,388 package, please make sure that 'multiqc.modules.interop' is explicitly added 2024-07-09T19:01:57,389 to the `packages` configuration field. 2024-07-09T19:01:57,390 Alternatively, you can also rely on setuptools' discovery methods 2024-07-09T19:01:57,390 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-07-09T19:01:57,391 instead of `find_packages(...)`/`find:`). 2024-07-09T19:01:57,392 You can read more about "package discovery" on setuptools documentation page: 2024-07-09T19:01:57,393 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-07-09T19:01:57,394 If you don't want 'multiqc.modules.interop' to be distributed and are 2024-07-09T19:01:57,394 already explicitly excluding 'multiqc.modules.interop' via 2024-07-09T19:01:57,395 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-07-09T19:01:57,395 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-07-09T19:01:57,396 combination with a more fine grained `package-data` configuration. 2024-07-09T19:01:57,397 You can read more about "package data files" on setuptools documentation page: 2024-07-09T19:01:57,398 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-07-09T19:01:57,399 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-07-09T19:01:57,399 even if it does not contain any `.py` files. 2024-07-09T19:01:57,400 On the other hand, currently there is no concept of package data 2024-07-09T19:01:57,400 directory, all directories are treated like packages. 2024-07-09T19:01:57,401 ******************************************************************************** 2024-07-09T19:01:57,401 !! 2024-07-09T19:01:57,402 check.warn(importable) 2024-07-09T19:01:57,402 /tmp/pip-build-env-abllg6kk/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.isoseq' is absent from the `packages` configuration. 2024-07-09T19:01:57,402 !! 2024-07-09T19:01:57,403 ******************************************************************************** 2024-07-09T19:01:57,403 ############################ 2024-07-09T19:01:57,404 # Package would be ignored # 2024-07-09T19:01:57,404 ############################ 2024-07-09T19:01:57,404 Python recognizes 'multiqc.modules.isoseq' as an importable package[^1], 2024-07-09T19:01:57,405 but it is absent from setuptools' `packages` configuration. 2024-07-09T19:01:57,406 This leads to an ambiguous overall configuration. If you want to distribute this 2024-07-09T19:01:57,406 package, please make sure that 'multiqc.modules.isoseq' is explicitly added 2024-07-09T19:01:57,407 to the `packages` configuration field. 2024-07-09T19:01:57,408 Alternatively, you can also rely on setuptools' discovery methods 2024-07-09T19:01:57,409 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-07-09T19:01:57,409 instead of `find_packages(...)`/`find:`). 2024-07-09T19:01:57,410 You can read more about "package discovery" on setuptools documentation page: 2024-07-09T19:01:57,411 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-07-09T19:01:57,412 If you don't want 'multiqc.modules.isoseq' to be distributed and are 2024-07-09T19:01:57,413 already explicitly excluding 'multiqc.modules.isoseq' via 2024-07-09T19:01:57,414 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-07-09T19:01:57,414 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-07-09T19:01:57,415 combination with a more fine grained `package-data` configuration. 2024-07-09T19:01:57,416 You can read more about "package data files" on setuptools documentation page: 2024-07-09T19:01:57,417 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-07-09T19:01:57,418 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-07-09T19:01:57,419 even if it does not contain any `.py` files. 2024-07-09T19:01:57,419 On the other hand, currently there is no concept of package data 2024-07-09T19:01:57,420 directory, all directories are treated like packages. 2024-07-09T19:01:57,421 ******************************************************************************** 2024-07-09T19:01:57,422 !! 2024-07-09T19:01:57,422 check.warn(importable) 2024-07-09T19:01:57,423 /tmp/pip-build-env-abllg6kk/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.ivar' is absent from the `packages` configuration. 2024-07-09T19:01:57,423 !! 2024-07-09T19:01:57,424 ******************************************************************************** 2024-07-09T19:01:57,425 ############################ 2024-07-09T19:01:57,426 # Package would be ignored # 2024-07-09T19:01:57,426 ############################ 2024-07-09T19:01:57,427 Python recognizes 'multiqc.modules.ivar' as an importable package[^1], 2024-07-09T19:01:57,427 but it is absent from setuptools' `packages` configuration. 2024-07-09T19:01:57,428 This leads to an ambiguous overall configuration. If you want to distribute this 2024-07-09T19:01:57,428 package, please make sure that 'multiqc.modules.ivar' is explicitly added 2024-07-09T19:01:57,428 to the `packages` configuration field. 2024-07-09T19:01:57,429 Alternatively, you can also rely on setuptools' discovery methods 2024-07-09T19:01:57,429 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-07-09T19:01:57,430 instead of `find_packages(...)`/`find:`). 2024-07-09T19:01:57,431 You can read more about "package discovery" on setuptools documentation page: 2024-07-09T19:01:57,431 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-07-09T19:01:57,432 If you don't want 'multiqc.modules.ivar' to be distributed and are 2024-07-09T19:01:57,432 already explicitly excluding 'multiqc.modules.ivar' via 2024-07-09T19:01:57,433 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-07-09T19:01:57,433 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-07-09T19:01:57,433 combination with a more fine grained `package-data` configuration. 2024-07-09T19:01:57,434 You can read more about "package data files" on setuptools documentation page: 2024-07-09T19:01:57,435 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-07-09T19:01:57,437 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-07-09T19:01:57,437 even if it does not contain any `.py` files. 2024-07-09T19:01:57,438 On the other hand, currently there is no concept of package data 2024-07-09T19:01:57,439 directory, all directories are treated like packages. 2024-07-09T19:01:57,439 ******************************************************************************** 2024-07-09T19:01:57,440 !! 2024-07-09T19:01:57,441 check.warn(importable) 2024-07-09T19:01:57,441 /tmp/pip-build-env-abllg6kk/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.jcvi' is absent from the `packages` configuration. 2024-07-09T19:01:57,442 !! 2024-07-09T19:01:57,443 ******************************************************************************** 2024-07-09T19:01:57,444 ############################ 2024-07-09T19:01:57,444 # Package would be ignored # 2024-07-09T19:01:57,445 ############################ 2024-07-09T19:01:57,445 Python recognizes 'multiqc.modules.jcvi' as an importable package[^1], 2024-07-09T19:01:57,446 but it is absent from setuptools' `packages` configuration. 2024-07-09T19:01:57,446 This leads to an ambiguous overall configuration. If you want to distribute this 2024-07-09T19:01:57,447 package, please make sure that 'multiqc.modules.jcvi' is explicitly added 2024-07-09T19:01:57,447 to the `packages` configuration field. 2024-07-09T19:01:57,448 Alternatively, you can also rely on setuptools' discovery methods 2024-07-09T19:01:57,449 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-07-09T19:01:57,450 instead of `find_packages(...)`/`find:`). 2024-07-09T19:01:57,451 You can read more about "package discovery" on setuptools documentation page: 2024-07-09T19:01:57,452 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-07-09T19:01:57,453 If you don't want 'multiqc.modules.jcvi' to be distributed and are 2024-07-09T19:01:57,453 already explicitly excluding 'multiqc.modules.jcvi' via 2024-07-09T19:01:57,454 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-07-09T19:01:57,454 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-07-09T19:01:57,455 combination with a more fine grained `package-data` configuration. 2024-07-09T19:01:57,456 You can read more about "package data files" on setuptools documentation page: 2024-07-09T19:01:57,456 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-07-09T19:01:57,457 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-07-09T19:01:57,458 even if it does not contain any `.py` files. 2024-07-09T19:01:57,458 On the other hand, currently there is no concept of package data 2024-07-09T19:01:57,458 directory, all directories are treated like packages. 2024-07-09T19:01:57,459 ******************************************************************************** 2024-07-09T19:01:57,459 !! 2024-07-09T19:01:57,460 check.warn(importable) 2024-07-09T19:01:57,460 /tmp/pip-build-env-abllg6kk/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.jellyfish' is absent from the `packages` configuration. 2024-07-09T19:01:57,460 !! 2024-07-09T19:01:57,461 ******************************************************************************** 2024-07-09T19:01:57,462 ############################ 2024-07-09T19:01:57,462 # Package would be ignored # 2024-07-09T19:01:57,462 ############################ 2024-07-09T19:01:57,463 Python recognizes 'multiqc.modules.jellyfish' as an importable package[^1], 2024-07-09T19:01:57,463 but it is absent from setuptools' `packages` configuration. 2024-07-09T19:01:57,464 This leads to an ambiguous overall configuration. If you want to distribute this 2024-07-09T19:01:57,465 package, please make sure that 'multiqc.modules.jellyfish' is explicitly added 2024-07-09T19:01:57,466 to the `packages` configuration field. 2024-07-09T19:01:57,467 Alternatively, you can also rely on setuptools' discovery methods 2024-07-09T19:01:57,467 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-07-09T19:01:57,468 instead of `find_packages(...)`/`find:`). 2024-07-09T19:01:57,469 You can read more about "package discovery" on setuptools documentation page: 2024-07-09T19:01:57,470 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-07-09T19:01:57,471 If you don't want 'multiqc.modules.jellyfish' to be distributed and are 2024-07-09T19:01:57,472 already explicitly excluding 'multiqc.modules.jellyfish' via 2024-07-09T19:01:57,472 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-07-09T19:01:57,473 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-07-09T19:01:57,473 combination with a more fine grained `package-data` configuration. 2024-07-09T19:01:57,474 You can read more about "package data files" on setuptools documentation page: 2024-07-09T19:01:57,475 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-07-09T19:01:57,477 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-07-09T19:01:57,477 even if it does not contain any `.py` files. 2024-07-09T19:01:57,478 On the other hand, currently there is no concept of package data 2024-07-09T19:01:57,478 directory, all directories are treated like packages. 2024-07-09T19:01:57,479 ******************************************************************************** 2024-07-09T19:01:57,480 !! 2024-07-09T19:01:57,480 check.warn(importable) 2024-07-09T19:01:57,481 /tmp/pip-build-env-abllg6kk/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.kaiju' is absent from the `packages` configuration. 2024-07-09T19:01:57,482 !! 2024-07-09T19:01:57,482 ******************************************************************************** 2024-07-09T19:01:57,483 ############################ 2024-07-09T19:01:57,483 # Package would be ignored # 2024-07-09T19:01:57,483 ############################ 2024-07-09T19:01:57,484 Python recognizes 'multiqc.modules.kaiju' as an importable package[^1], 2024-07-09T19:01:57,484 but it is absent from setuptools' `packages` configuration. 2024-07-09T19:01:57,485 This leads to an ambiguous overall configuration. If you want to distribute this 2024-07-09T19:01:57,485 package, please make sure that 'multiqc.modules.kaiju' is explicitly added 2024-07-09T19:01:57,485 to the `packages` configuration field. 2024-07-09T19:01:57,486 Alternatively, you can also rely on setuptools' discovery methods 2024-07-09T19:01:57,486 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-07-09T19:01:57,487 instead of `find_packages(...)`/`find:`). 2024-07-09T19:01:57,487 You can read more about "package discovery" on setuptools documentation page: 2024-07-09T19:01:57,488 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-07-09T19:01:57,489 If you don't want 'multiqc.modules.kaiju' to be distributed and are 2024-07-09T19:01:57,490 already explicitly excluding 'multiqc.modules.kaiju' via 2024-07-09T19:01:57,490 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-07-09T19:01:57,491 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-07-09T19:01:57,491 combination with a more fine grained `package-data` configuration. 2024-07-09T19:01:57,492 You can read more about "package data files" on setuptools documentation page: 2024-07-09T19:01:57,494 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-07-09T19:01:57,496 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-07-09T19:01:57,496 even if it does not contain any `.py` files. 2024-07-09T19:01:57,497 On the other hand, currently there is no concept of package data 2024-07-09T19:01:57,497 directory, all directories are treated like packages. 2024-07-09T19:01:57,498 ******************************************************************************** 2024-07-09T19:01:57,499 !! 2024-07-09T19:01:57,499 check.warn(importable) 2024-07-09T19:01:57,500 /tmp/pip-build-env-abllg6kk/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.kallisto' is absent from the `packages` configuration. 2024-07-09T19:01:57,500 !! 2024-07-09T19:01:57,501 ******************************************************************************** 2024-07-09T19:01:57,502 ############################ 2024-07-09T19:01:57,502 # Package would be ignored # 2024-07-09T19:01:57,503 ############################ 2024-07-09T19:01:57,503 Python recognizes 'multiqc.modules.kallisto' as an importable package[^1], 2024-07-09T19:01:57,503 but it is absent from setuptools' `packages` configuration. 2024-07-09T19:01:57,504 This leads to an ambiguous overall configuration. If you want to distribute this 2024-07-09T19:01:57,505 package, please make sure that 'multiqc.modules.kallisto' is explicitly added 2024-07-09T19:01:57,506 to the `packages` configuration field. 2024-07-09T19:01:57,507 Alternatively, you can also rely on setuptools' discovery methods 2024-07-09T19:01:57,507 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-07-09T19:01:57,508 instead of `find_packages(...)`/`find:`). 2024-07-09T19:01:57,509 You can read more about "package discovery" on setuptools documentation page: 2024-07-09T19:01:57,509 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-07-09T19:01:57,510 If you don't want 'multiqc.modules.kallisto' to be distributed and are 2024-07-09T19:01:57,510 already explicitly excluding 'multiqc.modules.kallisto' via 2024-07-09T19:01:57,511 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-07-09T19:01:57,511 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-07-09T19:01:57,511 combination with a more fine grained `package-data` configuration. 2024-07-09T19:01:57,512 You can read more about "package data files" on setuptools documentation page: 2024-07-09T19:01:57,513 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-07-09T19:01:57,514 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-07-09T19:01:57,514 even if it does not contain any `.py` files. 2024-07-09T19:01:57,515 On the other hand, currently there is no concept of package data 2024-07-09T19:01:57,515 directory, all directories are treated like packages. 2024-07-09T19:01:57,516 ******************************************************************************** 2024-07-09T19:01:57,516 !! 2024-07-09T19:01:57,517 check.warn(importable) 2024-07-09T19:01:57,518 /tmp/pip-build-env-abllg6kk/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.kat' is absent from the `packages` configuration. 2024-07-09T19:01:57,518 !! 2024-07-09T19:01:57,519 ******************************************************************************** 2024-07-09T19:01:57,520 ############################ 2024-07-09T19:01:57,520 # Package would be ignored # 2024-07-09T19:01:57,521 ############################ 2024-07-09T19:01:57,522 Python recognizes 'multiqc.modules.kat' as an importable package[^1], 2024-07-09T19:01:57,522 but it is absent from setuptools' `packages` configuration. 2024-07-09T19:01:57,523 This leads to an ambiguous overall configuration. If you want to distribute this 2024-07-09T19:01:57,524 package, please make sure that 'multiqc.modules.kat' is explicitly added 2024-07-09T19:01:57,525 to the `packages` configuration field. 2024-07-09T19:01:57,526 Alternatively, you can also rely on setuptools' discovery methods 2024-07-09T19:01:57,526 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-07-09T19:01:57,527 instead of `find_packages(...)`/`find:`). 2024-07-09T19:01:57,528 You can read more about "package discovery" on setuptools documentation page: 2024-07-09T19:01:57,529 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-07-09T19:01:57,530 If you don't want 'multiqc.modules.kat' to be distributed and are 2024-07-09T19:01:57,530 already explicitly excluding 'multiqc.modules.kat' via 2024-07-09T19:01:57,531 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-07-09T19:01:57,532 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-07-09T19:01:57,532 combination with a more fine grained `package-data` configuration. 2024-07-09T19:01:57,533 You can read more about "package data files" on setuptools documentation page: 2024-07-09T19:01:57,535 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-07-09T19:01:57,537 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-07-09T19:01:57,538 even if it does not contain any `.py` files. 2024-07-09T19:01:57,539 On the other hand, currently there is no concept of package data 2024-07-09T19:01:57,539 directory, all directories are treated like packages. 2024-07-09T19:01:57,540 ******************************************************************************** 2024-07-09T19:01:57,541 !! 2024-07-09T19:01:57,541 check.warn(importable) 2024-07-09T19:01:57,541 /tmp/pip-build-env-abllg6kk/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.kraken' is absent from the `packages` configuration. 2024-07-09T19:01:57,542 !! 2024-07-09T19:01:57,543 ******************************************************************************** 2024-07-09T19:01:57,543 ############################ 2024-07-09T19:01:57,544 # Package would be ignored # 2024-07-09T19:01:57,544 ############################ 2024-07-09T19:01:57,545 Python recognizes 'multiqc.modules.kraken' as an importable package[^1], 2024-07-09T19:01:57,545 but it is absent from setuptools' `packages` configuration. 2024-07-09T19:01:57,546 This leads to an ambiguous overall configuration. If you want to distribute this 2024-07-09T19:01:57,547 package, please make sure that 'multiqc.modules.kraken' is explicitly added 2024-07-09T19:01:57,547 to the `packages` configuration field. 2024-07-09T19:01:57,548 Alternatively, you can also rely on setuptools' discovery methods 2024-07-09T19:01:57,549 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-07-09T19:01:57,549 instead of `find_packages(...)`/`find:`). 2024-07-09T19:01:57,550 You can read more about "package discovery" on setuptools documentation page: 2024-07-09T19:01:57,551 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-07-09T19:01:57,553 If you don't want 'multiqc.modules.kraken' to be distributed and are 2024-07-09T19:01:57,553 already explicitly excluding 'multiqc.modules.kraken' via 2024-07-09T19:01:57,554 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-07-09T19:01:57,555 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-07-09T19:01:57,556 combination with a more fine grained `package-data` configuration. 2024-07-09T19:01:57,557 You can read more about "package data files" on setuptools documentation page: 2024-07-09T19:01:57,558 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-07-09T19:01:57,560 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-07-09T19:01:57,561 even if it does not contain any `.py` files. 2024-07-09T19:01:57,561 On the other hand, currently there is no concept of package data 2024-07-09T19:01:57,562 directory, all directories are treated like packages. 2024-07-09T19:01:57,562 ******************************************************************************** 2024-07-09T19:01:57,564 !! 2024-07-09T19:01:57,564 check.warn(importable) 2024-07-09T19:01:57,565 /tmp/pip-build-env-abllg6kk/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.leehom' is absent from the `packages` configuration. 2024-07-09T19:01:57,565 !! 2024-07-09T19:01:57,566 ******************************************************************************** 2024-07-09T19:01:57,567 ############################ 2024-07-09T19:01:57,568 # Package would be ignored # 2024-07-09T19:01:57,568 ############################ 2024-07-09T19:01:57,569 Python recognizes 'multiqc.modules.leehom' as an importable package[^1], 2024-07-09T19:01:57,570 but it is absent from setuptools' `packages` configuration. 2024-07-09T19:01:57,571 This leads to an ambiguous overall configuration. If you want to distribute this 2024-07-09T19:01:57,572 package, please make sure that 'multiqc.modules.leehom' is explicitly added 2024-07-09T19:01:57,572 to the `packages` configuration field. 2024-07-09T19:01:57,573 Alternatively, you can also rely on setuptools' discovery methods 2024-07-09T19:01:57,573 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-07-09T19:01:57,574 instead of `find_packages(...)`/`find:`). 2024-07-09T19:01:57,575 You can read more about "package discovery" on setuptools documentation page: 2024-07-09T19:01:57,576 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-07-09T19:01:57,577 If you don't want 'multiqc.modules.leehom' to be distributed and are 2024-07-09T19:01:57,577 already explicitly excluding 'multiqc.modules.leehom' via 2024-07-09T19:01:57,578 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-07-09T19:01:57,578 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-07-09T19:01:57,579 combination with a more fine grained `package-data` configuration. 2024-07-09T19:01:57,580 You can read more about "package data files" on setuptools documentation page: 2024-07-09T19:01:57,581 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-07-09T19:01:57,583 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-07-09T19:01:57,583 even if it does not contain any `.py` files. 2024-07-09T19:01:57,584 On the other hand, currently there is no concept of package data 2024-07-09T19:01:57,585 directory, all directories are treated like packages. 2024-07-09T19:01:57,585 ******************************************************************************** 2024-07-09T19:01:57,587 !! 2024-07-09T19:01:57,587 check.warn(importable) 2024-07-09T19:01:57,588 /tmp/pip-build-env-abllg6kk/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.librarian' is absent from the `packages` configuration. 2024-07-09T19:01:57,589 !! 2024-07-09T19:01:57,590 ******************************************************************************** 2024-07-09T19:01:57,591 ############################ 2024-07-09T19:01:57,591 # Package would be ignored # 2024-07-09T19:01:57,592 ############################ 2024-07-09T19:01:57,593 Python recognizes 'multiqc.modules.librarian' as an importable package[^1], 2024-07-09T19:01:57,593 but it is absent from setuptools' `packages` configuration. 2024-07-09T19:01:57,594 This leads to an ambiguous overall configuration. If you want to distribute this 2024-07-09T19:01:57,595 package, please make sure that 'multiqc.modules.librarian' is explicitly added 2024-07-09T19:01:57,596 to the `packages` configuration field. 2024-07-09T19:01:57,597 Alternatively, you can also rely on setuptools' discovery methods 2024-07-09T19:01:57,598 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-07-09T19:01:57,598 instead of `find_packages(...)`/`find:`). 2024-07-09T19:01:57,599 You can read more about "package discovery" on setuptools documentation page: 2024-07-09T19:01:57,601 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-07-09T19:01:57,602 If you don't want 'multiqc.modules.librarian' to be distributed and are 2024-07-09T19:01:57,603 already explicitly excluding 'multiqc.modules.librarian' via 2024-07-09T19:01:57,603 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-07-09T19:01:57,604 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-07-09T19:01:57,605 combination with a more fine grained `package-data` configuration. 2024-07-09T19:01:57,606 You can read more about "package data files" on setuptools documentation page: 2024-07-09T19:01:57,607 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-07-09T19:01:57,608 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-07-09T19:01:57,609 even if it does not contain any `.py` files. 2024-07-09T19:01:57,609 On the other hand, currently there is no concept of package data 2024-07-09T19:01:57,610 directory, all directories are treated like packages. 2024-07-09T19:01:57,610 ******************************************************************************** 2024-07-09T19:01:57,611 !! 2024-07-09T19:01:57,611 check.warn(importable) 2024-07-09T19:01:57,612 /tmp/pip-build-env-abllg6kk/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.lima' is absent from the `packages` configuration. 2024-07-09T19:01:57,613 !! 2024-07-09T19:01:57,613 ******************************************************************************** 2024-07-09T19:01:57,614 ############################ 2024-07-09T19:01:57,614 # Package would be ignored # 2024-07-09T19:01:57,615 ############################ 2024-07-09T19:01:57,615 Python recognizes 'multiqc.modules.lima' as an importable package[^1], 2024-07-09T19:01:57,616 but it is absent from setuptools' `packages` configuration. 2024-07-09T19:01:57,617 This leads to an ambiguous overall configuration. If you want to distribute this 2024-07-09T19:01:57,618 package, please make sure that 'multiqc.modules.lima' is explicitly added 2024-07-09T19:01:57,618 to the `packages` configuration field. 2024-07-09T19:01:57,620 Alternatively, you can also rely on setuptools' discovery methods 2024-07-09T19:01:57,620 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-07-09T19:01:57,621 instead of `find_packages(...)`/`find:`). 2024-07-09T19:01:57,622 You can read more about "package discovery" on setuptools documentation page: 2024-07-09T19:01:57,624 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-07-09T19:01:57,625 If you don't want 'multiqc.modules.lima' to be distributed and are 2024-07-09T19:01:57,626 already explicitly excluding 'multiqc.modules.lima' via 2024-07-09T19:01:57,626 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-07-09T19:01:57,627 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-07-09T19:01:57,628 combination with a more fine grained `package-data` configuration. 2024-07-09T19:01:57,629 You can read more about "package data files" on setuptools documentation page: 2024-07-09T19:01:57,630 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-07-09T19:01:57,631 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-07-09T19:01:57,632 even if it does not contain any `.py` files. 2024-07-09T19:01:57,632 On the other hand, currently there is no concept of package data 2024-07-09T19:01:57,633 directory, all directories are treated like packages. 2024-07-09T19:01:57,633 ******************************************************************************** 2024-07-09T19:01:57,634 !! 2024-07-09T19:01:57,634 check.warn(importable) 2024-07-09T19:01:57,635 /tmp/pip-build-env-abllg6kk/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.longranger' is absent from the `packages` configuration. 2024-07-09T19:01:57,636 !! 2024-07-09T19:01:57,637 ******************************************************************************** 2024-07-09T19:01:57,637 ############################ 2024-07-09T19:01:57,638 # Package would be ignored # 2024-07-09T19:01:57,638 ############################ 2024-07-09T19:01:57,639 Python recognizes 'multiqc.modules.longranger' as an importable package[^1], 2024-07-09T19:01:57,639 but it is absent from setuptools' `packages` configuration. 2024-07-09T19:01:57,640 This leads to an ambiguous overall configuration. If you want to distribute this 2024-07-09T19:01:57,640 package, please make sure that 'multiqc.modules.longranger' is explicitly added 2024-07-09T19:01:57,640 to the `packages` configuration field. 2024-07-09T19:01:57,641 Alternatively, you can also rely on setuptools' discovery methods 2024-07-09T19:01:57,641 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-07-09T19:01:57,642 instead of `find_packages(...)`/`find:`). 2024-07-09T19:01:57,642 You can read more about "package discovery" on setuptools documentation page: 2024-07-09T19:01:57,643 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-07-09T19:01:57,644 If you don't want 'multiqc.modules.longranger' to be distributed and are 2024-07-09T19:01:57,644 already explicitly excluding 'multiqc.modules.longranger' via 2024-07-09T19:01:57,644 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-07-09T19:01:57,645 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-07-09T19:01:57,645 combination with a more fine grained `package-data` configuration. 2024-07-09T19:01:57,646 You can read more about "package data files" on setuptools documentation page: 2024-07-09T19:01:57,647 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-07-09T19:01:57,649 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-07-09T19:01:57,650 even if it does not contain any `.py` files. 2024-07-09T19:01:57,650 On the other hand, currently there is no concept of package data 2024-07-09T19:01:57,651 directory, all directories are treated like packages. 2024-07-09T19:01:57,651 ******************************************************************************** 2024-07-09T19:01:57,652 !! 2024-07-09T19:01:57,653 check.warn(importable) 2024-07-09T19:01:57,654 /tmp/pip-build-env-abllg6kk/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.macs2' is absent from the `packages` configuration. 2024-07-09T19:01:57,654 !! 2024-07-09T19:01:57,655 ******************************************************************************** 2024-07-09T19:01:57,656 ############################ 2024-07-09T19:01:57,656 # Package would be ignored # 2024-07-09T19:01:57,657 ############################ 2024-07-09T19:01:57,657 Python recognizes 'multiqc.modules.macs2' as an importable package[^1], 2024-07-09T19:01:57,657 but it is absent from setuptools' `packages` configuration. 2024-07-09T19:01:57,658 This leads to an ambiguous overall configuration. If you want to distribute this 2024-07-09T19:01:57,659 package, please make sure that 'multiqc.modules.macs2' is explicitly added 2024-07-09T19:01:57,659 to the `packages` configuration field. 2024-07-09T19:01:57,660 Alternatively, you can also rely on setuptools' discovery methods 2024-07-09T19:01:57,661 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-07-09T19:01:57,661 instead of `find_packages(...)`/`find:`). 2024-07-09T19:01:57,663 You can read more about "package discovery" on setuptools documentation page: 2024-07-09T19:01:57,664 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-07-09T19:01:57,665 If you don't want 'multiqc.modules.macs2' to be distributed and are 2024-07-09T19:01:57,666 already explicitly excluding 'multiqc.modules.macs2' via 2024-07-09T19:01:57,666 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-07-09T19:01:57,666 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-07-09T19:01:57,667 combination with a more fine grained `package-data` configuration. 2024-07-09T19:01:57,668 You can read more about "package data files" on setuptools documentation page: 2024-07-09T19:01:57,668 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-07-09T19:01:57,670 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-07-09T19:01:57,670 even if it does not contain any `.py` files. 2024-07-09T19:01:57,670 On the other hand, currently there is no concept of package data 2024-07-09T19:01:57,671 directory, all directories are treated like packages. 2024-07-09T19:01:57,671 ******************************************************************************** 2024-07-09T19:01:57,672 !! 2024-07-09T19:01:57,672 check.warn(importable) 2024-07-09T19:01:57,672 /tmp/pip-build-env-abllg6kk/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.malt' is absent from the `packages` configuration. 2024-07-09T19:01:57,673 !! 2024-07-09T19:01:57,674 ******************************************************************************** 2024-07-09T19:01:57,674 ############################ 2024-07-09T19:01:57,675 # Package would be ignored # 2024-07-09T19:01:57,675 ############################ 2024-07-09T19:01:57,676 Python recognizes 'multiqc.modules.malt' as an importable package[^1], 2024-07-09T19:01:57,677 but it is absent from setuptools' `packages` configuration. 2024-07-09T19:01:57,678 This leads to an ambiguous overall configuration. If you want to distribute this 2024-07-09T19:01:57,678 package, please make sure that 'multiqc.modules.malt' is explicitly added 2024-07-09T19:01:57,679 to the `packages` configuration field. 2024-07-09T19:01:57,680 Alternatively, you can also rely on setuptools' discovery methods 2024-07-09T19:01:57,680 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-07-09T19:01:57,681 instead of `find_packages(...)`/`find:`). 2024-07-09T19:01:57,682 You can read more about "package discovery" on setuptools documentation page: 2024-07-09T19:01:57,683 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-07-09T19:01:57,684 If you don't want 'multiqc.modules.malt' to be distributed and are 2024-07-09T19:01:57,685 already explicitly excluding 'multiqc.modules.malt' via 2024-07-09T19:01:57,685 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-07-09T19:01:57,686 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-07-09T19:01:57,686 combination with a more fine grained `package-data` configuration. 2024-07-09T19:01:57,687 You can read more about "package data files" on setuptools documentation page: 2024-07-09T19:01:57,688 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-07-09T19:01:57,690 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-07-09T19:01:57,690 even if it does not contain any `.py` files. 2024-07-09T19:01:57,691 On the other hand, currently there is no concept of package data 2024-07-09T19:01:57,691 directory, all directories are treated like packages. 2024-07-09T19:01:57,692 ******************************************************************************** 2024-07-09T19:01:57,693 !! 2024-07-09T19:01:57,694 check.warn(importable) 2024-07-09T19:01:57,694 /tmp/pip-build-env-abllg6kk/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.mapdamage' is absent from the `packages` configuration. 2024-07-09T19:01:57,695 !! 2024-07-09T19:01:57,695 ******************************************************************************** 2024-07-09T19:01:57,696 ############################ 2024-07-09T19:01:57,696 # Package would be ignored # 2024-07-09T19:01:57,696 ############################ 2024-07-09T19:01:57,697 Python recognizes 'multiqc.modules.mapdamage' as an importable package[^1], 2024-07-09T19:01:57,697 but it is absent from setuptools' `packages` configuration. 2024-07-09T19:01:57,698 This leads to an ambiguous overall configuration. If you want to distribute this 2024-07-09T19:01:57,698 package, please make sure that 'multiqc.modules.mapdamage' is explicitly added 2024-07-09T19:01:57,699 to the `packages` configuration field. 2024-07-09T19:01:57,699 Alternatively, you can also rely on setuptools' discovery methods 2024-07-09T19:01:57,700 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-07-09T19:01:57,700 instead of `find_packages(...)`/`find:`). 2024-07-09T19:01:57,701 You can read more about "package discovery" on setuptools documentation page: 2024-07-09T19:01:57,702 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-07-09T19:01:57,703 If you don't want 'multiqc.modules.mapdamage' to be distributed and are 2024-07-09T19:01:57,703 already explicitly excluding 'multiqc.modules.mapdamage' via 2024-07-09T19:01:57,704 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-07-09T19:01:57,704 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-07-09T19:01:57,705 combination with a more fine grained `package-data` configuration. 2024-07-09T19:01:57,705 You can read more about "package data files" on setuptools documentation page: 2024-07-09T19:01:57,707 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-07-09T19:01:57,708 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-07-09T19:01:57,709 even if it does not contain any `.py` files. 2024-07-09T19:01:57,709 On the other hand, currently there is no concept of package data 2024-07-09T19:01:57,710 directory, all directories are treated like packages. 2024-07-09T19:01:57,710 ******************************************************************************** 2024-07-09T19:01:57,711 !! 2024-07-09T19:01:57,712 check.warn(importable) 2024-07-09T19:01:57,712 /tmp/pip-build-env-abllg6kk/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.megahit' is absent from the `packages` configuration. 2024-07-09T19:01:57,713 !! 2024-07-09T19:01:57,714 ******************************************************************************** 2024-07-09T19:01:57,714 ############################ 2024-07-09T19:01:57,715 # Package would be ignored # 2024-07-09T19:01:57,715 ############################ 2024-07-09T19:01:57,716 Python recognizes 'multiqc.modules.megahit' as an importable package[^1], 2024-07-09T19:01:57,717 but it is absent from setuptools' `packages` configuration. 2024-07-09T19:01:57,718 This leads to an ambiguous overall configuration. If you want to distribute this 2024-07-09T19:01:57,718 package, please make sure that 'multiqc.modules.megahit' is explicitly added 2024-07-09T19:01:57,719 to the `packages` configuration field. 2024-07-09T19:01:57,720 Alternatively, you can also rely on setuptools' discovery methods 2024-07-09T19:01:57,721 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-07-09T19:01:57,721 instead of `find_packages(...)`/`find:`). 2024-07-09T19:01:57,722 You can read more about "package discovery" on setuptools documentation page: 2024-07-09T19:01:57,722 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-07-09T19:01:57,723 If you don't want 'multiqc.modules.megahit' to be distributed and are 2024-07-09T19:01:57,723 already explicitly excluding 'multiqc.modules.megahit' via 2024-07-09T19:01:57,724 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-07-09T19:01:57,724 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-07-09T19:01:57,725 combination with a more fine grained `package-data` configuration. 2024-07-09T19:01:57,725 You can read more about "package data files" on setuptools documentation page: 2024-07-09T19:01:57,726 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-07-09T19:01:57,727 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-07-09T19:01:57,728 even if it does not contain any `.py` files. 2024-07-09T19:01:57,728 On the other hand, currently there is no concept of package data 2024-07-09T19:01:57,729 directory, all directories are treated like packages. 2024-07-09T19:01:57,729 ******************************************************************************** 2024-07-09T19:01:57,730 !! 2024-07-09T19:01:57,730 check.warn(importable) 2024-07-09T19:01:57,731 /tmp/pip-build-env-abllg6kk/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.metaphlan' is absent from the `packages` configuration. 2024-07-09T19:01:57,731 !! 2024-07-09T19:01:57,733 ******************************************************************************** 2024-07-09T19:01:57,733 ############################ 2024-07-09T19:01:57,734 # Package would be ignored # 2024-07-09T19:01:57,734 ############################ 2024-07-09T19:01:57,735 Python recognizes 'multiqc.modules.metaphlan' as an importable package[^1], 2024-07-09T19:01:57,735 but it is absent from setuptools' `packages` configuration. 2024-07-09T19:01:57,736 This leads to an ambiguous overall configuration. If you want to distribute this 2024-07-09T19:01:57,737 package, please make sure that 'multiqc.modules.metaphlan' is explicitly added 2024-07-09T19:01:57,737 to the `packages` configuration field. 2024-07-09T19:01:57,738 Alternatively, you can also rely on setuptools' discovery methods 2024-07-09T19:01:57,739 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-07-09T19:01:57,739 instead of `find_packages(...)`/`find:`). 2024-07-09T19:01:57,741 You can read more about "package discovery" on setuptools documentation page: 2024-07-09T19:01:57,742 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-07-09T19:01:57,743 If you don't want 'multiqc.modules.metaphlan' to be distributed and are 2024-07-09T19:01:57,744 already explicitly excluding 'multiqc.modules.metaphlan' via 2024-07-09T19:01:57,744 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-07-09T19:01:57,745 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-07-09T19:01:57,745 combination with a more fine grained `package-data` configuration. 2024-07-09T19:01:57,747 You can read more about "package data files" on setuptools documentation page: 2024-07-09T19:01:57,748 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-07-09T19:01:57,750 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-07-09T19:01:57,750 even if it does not contain any `.py` files. 2024-07-09T19:01:57,750 On the other hand, currently there is no concept of package data 2024-07-09T19:01:57,751 directory, all directories are treated like packages. 2024-07-09T19:01:57,751 ******************************************************************************** 2024-07-09T19:01:57,752 !! 2024-07-09T19:01:57,752 check.warn(importable) 2024-07-09T19:01:57,752 /tmp/pip-build-env-abllg6kk/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.methylqa' is absent from the `packages` configuration. 2024-07-09T19:01:57,753 !! 2024-07-09T19:01:57,753 ******************************************************************************** 2024-07-09T19:01:57,754 ############################ 2024-07-09T19:01:57,754 # Package would be ignored # 2024-07-09T19:01:57,754 ############################ 2024-07-09T19:01:57,755 Python recognizes 'multiqc.modules.methylqa' as an importable package[^1], 2024-07-09T19:01:57,755 but it is absent from setuptools' `packages` configuration. 2024-07-09T19:01:57,756 This leads to an ambiguous overall configuration. If you want to distribute this 2024-07-09T19:01:57,757 package, please make sure that 'multiqc.modules.methylqa' is explicitly added 2024-07-09T19:01:57,757 to the `packages` configuration field. 2024-07-09T19:01:57,758 Alternatively, you can also rely on setuptools' discovery methods 2024-07-09T19:01:57,758 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-07-09T19:01:57,759 instead of `find_packages(...)`/`find:`). 2024-07-09T19:01:57,760 You can read more about "package discovery" on setuptools documentation page: 2024-07-09T19:01:57,761 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-07-09T19:01:57,762 If you don't want 'multiqc.modules.methylqa' to be distributed and are 2024-07-09T19:01:57,763 already explicitly excluding 'multiqc.modules.methylqa' via 2024-07-09T19:01:57,763 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-07-09T19:01:57,764 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-07-09T19:01:57,765 combination with a more fine grained `package-data` configuration. 2024-07-09T19:01:57,766 You can read more about "package data files" on setuptools documentation page: 2024-07-09T19:01:57,767 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-07-09T19:01:57,769 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-07-09T19:01:57,769 even if it does not contain any `.py` files. 2024-07-09T19:01:57,769 On the other hand, currently there is no concept of package data 2024-07-09T19:01:57,770 directory, all directories are treated like packages. 2024-07-09T19:01:57,770 ******************************************************************************** 2024-07-09T19:01:57,771 !! 2024-07-09T19:01:57,772 check.warn(importable) 2024-07-09T19:01:57,773 /tmp/pip-build-env-abllg6kk/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.minionqc' is absent from the `packages` configuration. 2024-07-09T19:01:57,773 !! 2024-07-09T19:01:57,774 ******************************************************************************** 2024-07-09T19:01:57,775 ############################ 2024-07-09T19:01:57,775 # Package would be ignored # 2024-07-09T19:01:57,776 ############################ 2024-07-09T19:01:57,777 Python recognizes 'multiqc.modules.minionqc' as an importable package[^1], 2024-07-09T19:01:57,777 but it is absent from setuptools' `packages` configuration. 2024-07-09T19:01:57,778 This leads to an ambiguous overall configuration. If you want to distribute this 2024-07-09T19:01:57,779 package, please make sure that 'multiqc.modules.minionqc' is explicitly added 2024-07-09T19:01:57,779 to the `packages` configuration field. 2024-07-09T19:01:57,780 Alternatively, you can also rely on setuptools' discovery methods 2024-07-09T19:01:57,780 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-07-09T19:01:57,781 instead of `find_packages(...)`/`find:`). 2024-07-09T19:01:57,781 You can read more about "package discovery" on setuptools documentation page: 2024-07-09T19:01:57,782 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-07-09T19:01:57,783 If you don't want 'multiqc.modules.minionqc' to be distributed and are 2024-07-09T19:01:57,783 already explicitly excluding 'multiqc.modules.minionqc' via 2024-07-09T19:01:57,783 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-07-09T19:01:57,784 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-07-09T19:01:57,784 combination with a more fine grained `package-data` configuration. 2024-07-09T19:01:57,785 You can read more about "package data files" on setuptools documentation page: 2024-07-09T19:01:57,786 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-07-09T19:01:57,787 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-07-09T19:01:57,787 even if it does not contain any `.py` files. 2024-07-09T19:01:57,788 On the other hand, currently there is no concept of package data 2024-07-09T19:01:57,793 directory, all directories are treated like packages. 2024-07-09T19:01:57,794 ******************************************************************************** 2024-07-09T19:01:57,795 !! 2024-07-09T19:01:57,796 check.warn(importable) 2024-07-09T19:01:57,796 /tmp/pip-build-env-abllg6kk/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.mirtop' is absent from the `packages` configuration. 2024-07-09T19:01:57,797 !! 2024-07-09T19:01:57,798 ******************************************************************************** 2024-07-09T19:01:57,798 ############################ 2024-07-09T19:01:57,799 # Package would be ignored # 2024-07-09T19:01:57,799 ############################ 2024-07-09T19:01:57,800 Python recognizes 'multiqc.modules.mirtop' as an importable package[^1], 2024-07-09T19:01:57,800 but it is absent from setuptools' `packages` configuration. 2024-07-09T19:01:57,801 This leads to an ambiguous overall configuration. If you want to distribute this 2024-07-09T19:01:57,801 package, please make sure that 'multiqc.modules.mirtop' is explicitly added 2024-07-09T19:01:57,802 to the `packages` configuration field. 2024-07-09T19:01:57,803 Alternatively, you can also rely on setuptools' discovery methods 2024-07-09T19:01:57,803 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-07-09T19:01:57,804 instead of `find_packages(...)`/`find:`). 2024-07-09T19:01:57,805 You can read more about "package discovery" on setuptools documentation page: 2024-07-09T19:01:57,806 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-07-09T19:01:57,807 If you don't want 'multiqc.modules.mirtop' to be distributed and are 2024-07-09T19:01:57,808 already explicitly excluding 'multiqc.modules.mirtop' via 2024-07-09T19:01:57,808 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-07-09T19:01:57,809 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-07-09T19:01:57,810 combination with a more fine grained `package-data` configuration. 2024-07-09T19:01:57,810 You can read more about "package data files" on setuptools documentation page: 2024-07-09T19:01:57,811 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-07-09T19:01:57,812 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-07-09T19:01:57,813 even if it does not contain any `.py` files. 2024-07-09T19:01:57,813 On the other hand, currently there is no concept of package data 2024-07-09T19:01:57,813 directory, all directories are treated like packages. 2024-07-09T19:01:57,814 ******************************************************************************** 2024-07-09T19:01:57,814 !! 2024-07-09T19:01:57,815 check.warn(importable) 2024-07-09T19:01:57,815 /tmp/pip-build-env-abllg6kk/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.mirtrace' is absent from the `packages` configuration. 2024-07-09T19:01:57,816 !! 2024-07-09T19:01:57,817 ******************************************************************************** 2024-07-09T19:01:57,817 ############################ 2024-07-09T19:01:57,817 # Package would be ignored # 2024-07-09T19:01:57,818 ############################ 2024-07-09T19:01:57,818 Python recognizes 'multiqc.modules.mirtrace' as an importable package[^1], 2024-07-09T19:01:57,819 but it is absent from setuptools' `packages` configuration. 2024-07-09T19:01:57,819 This leads to an ambiguous overall configuration. If you want to distribute this 2024-07-09T19:01:57,820 package, please make sure that 'multiqc.modules.mirtrace' is explicitly added 2024-07-09T19:01:57,820 to the `packages` configuration field. 2024-07-09T19:01:57,821 Alternatively, you can also rely on setuptools' discovery methods 2024-07-09T19:01:57,822 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-07-09T19:01:57,823 instead of `find_packages(...)`/`find:`). 2024-07-09T19:01:57,824 You can read more about "package discovery" on setuptools documentation page: 2024-07-09T19:01:57,825 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-07-09T19:01:57,826 If you don't want 'multiqc.modules.mirtrace' to be distributed and are 2024-07-09T19:01:57,827 already explicitly excluding 'multiqc.modules.mirtrace' via 2024-07-09T19:01:57,827 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-07-09T19:01:57,828 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-07-09T19:01:57,829 combination with a more fine grained `package-data` configuration. 2024-07-09T19:01:57,829 You can read more about "package data files" on setuptools documentation page: 2024-07-09T19:01:57,830 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-07-09T19:01:57,832 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-07-09T19:01:57,832 even if it does not contain any `.py` files. 2024-07-09T19:01:57,833 On the other hand, currently there is no concept of package data 2024-07-09T19:01:57,833 directory, all directories are treated like packages. 2024-07-09T19:01:57,834 ******************************************************************************** 2024-07-09T19:01:57,835 !! 2024-07-09T19:01:57,836 check.warn(importable) 2024-07-09T19:01:57,836 /tmp/pip-build-env-abllg6kk/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.mosdepth' is absent from the `packages` configuration. 2024-07-09T19:01:57,837 !! 2024-07-09T19:01:57,838 ******************************************************************************** 2024-07-09T19:01:57,838 ############################ 2024-07-09T19:01:57,839 # Package would be ignored # 2024-07-09T19:01:57,839 ############################ 2024-07-09T19:01:57,839 Python recognizes 'multiqc.modules.mosdepth' as an importable package[^1], 2024-07-09T19:01:57,840 but it is absent from setuptools' `packages` configuration. 2024-07-09T19:01:57,841 This leads to an ambiguous overall configuration. If you want to distribute this 2024-07-09T19:01:57,841 package, please make sure that 'multiqc.modules.mosdepth' is explicitly added 2024-07-09T19:01:57,841 to the `packages` configuration field. 2024-07-09T19:01:57,842 Alternatively, you can also rely on setuptools' discovery methods 2024-07-09T19:01:57,842 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-07-09T19:01:57,843 instead of `find_packages(...)`/`find:`). 2024-07-09T19:01:57,843 You can read more about "package discovery" on setuptools documentation page: 2024-07-09T19:01:57,844 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-07-09T19:01:57,845 If you don't want 'multiqc.modules.mosdepth' to be distributed and are 2024-07-09T19:01:57,845 already explicitly excluding 'multiqc.modules.mosdepth' via 2024-07-09T19:01:57,846 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-07-09T19:01:57,846 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-07-09T19:01:57,847 combination with a more fine grained `package-data` configuration. 2024-07-09T19:01:57,848 You can read more about "package data files" on setuptools documentation page: 2024-07-09T19:01:57,849 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-07-09T19:01:57,851 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-07-09T19:01:57,851 even if it does not contain any `.py` files. 2024-07-09T19:01:57,852 On the other hand, currently there is no concept of package data 2024-07-09T19:01:57,852 directory, all directories are treated like packages. 2024-07-09T19:01:57,853 ******************************************************************************** 2024-07-09T19:01:57,854 !! 2024-07-09T19:01:57,854 check.warn(importable) 2024-07-09T19:01:57,855 /tmp/pip-build-env-abllg6kk/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.motus' is absent from the `packages` configuration. 2024-07-09T19:01:57,855 !! 2024-07-09T19:01:57,857 ******************************************************************************** 2024-07-09T19:01:57,857 ############################ 2024-07-09T19:01:57,857 # Package would be ignored # 2024-07-09T19:01:57,858 ############################ 2024-07-09T19:01:57,858 Python recognizes 'multiqc.modules.motus' as an importable package[^1], 2024-07-09T19:01:57,859 but it is absent from setuptools' `packages` configuration. 2024-07-09T19:01:57,860 This leads to an ambiguous overall configuration. If you want to distribute this 2024-07-09T19:01:57,860 package, please make sure that 'multiqc.modules.motus' is explicitly added 2024-07-09T19:01:57,861 to the `packages` configuration field. 2024-07-09T19:01:57,862 Alternatively, you can also rely on setuptools' discovery methods 2024-07-09T19:01:57,862 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-07-09T19:01:57,863 instead of `find_packages(...)`/`find:`). 2024-07-09T19:01:57,864 You can read more about "package discovery" on setuptools documentation page: 2024-07-09T19:01:57,865 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-07-09T19:01:57,865 If you don't want 'multiqc.modules.motus' to be distributed and are 2024-07-09T19:01:57,866 already explicitly excluding 'multiqc.modules.motus' via 2024-07-09T19:01:57,866 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-07-09T19:01:57,866 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-07-09T19:01:57,867 combination with a more fine grained `package-data` configuration. 2024-07-09T19:01:57,867 You can read more about "package data files" on setuptools documentation page: 2024-07-09T19:01:57,868 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-07-09T19:01:57,869 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-07-09T19:01:57,870 even if it does not contain any `.py` files. 2024-07-09T19:01:57,870 On the other hand, currently there is no concept of package data 2024-07-09T19:01:57,870 directory, all directories are treated like packages. 2024-07-09T19:01:57,871 ******************************************************************************** 2024-07-09T19:01:57,871 !! 2024-07-09T19:01:57,872 check.warn(importable) 2024-07-09T19:01:57,872 /tmp/pip-build-env-abllg6kk/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.mtnucratio' is absent from the `packages` configuration. 2024-07-09T19:01:57,873 !! 2024-07-09T19:01:57,873 ******************************************************************************** 2024-07-09T19:01:57,874 ############################ 2024-07-09T19:01:57,874 # Package would be ignored # 2024-07-09T19:01:57,875 ############################ 2024-07-09T19:01:57,875 Python recognizes 'multiqc.modules.mtnucratio' as an importable package[^1], 2024-07-09T19:01:57,876 but it is absent from setuptools' `packages` configuration. 2024-07-09T19:01:57,877 This leads to an ambiguous overall configuration. If you want to distribute this 2024-07-09T19:01:57,878 package, please make sure that 'multiqc.modules.mtnucratio' is explicitly added 2024-07-09T19:01:57,878 to the `packages` configuration field. 2024-07-09T19:01:57,879 Alternatively, you can also rely on setuptools' discovery methods 2024-07-09T19:01:57,880 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-07-09T19:01:57,880 instead of `find_packages(...)`/`find:`). 2024-07-09T19:01:57,881 You can read more about "package discovery" on setuptools documentation page: 2024-07-09T19:01:57,882 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-07-09T19:01:57,883 If you don't want 'multiqc.modules.mtnucratio' to be distributed and are 2024-07-09T19:01:57,884 already explicitly excluding 'multiqc.modules.mtnucratio' via 2024-07-09T19:01:57,884 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-07-09T19:01:57,885 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-07-09T19:01:57,885 combination with a more fine grained `package-data` configuration. 2024-07-09T19:01:57,886 You can read more about "package data files" on setuptools documentation page: 2024-07-09T19:01:57,887 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-07-09T19:01:57,889 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-07-09T19:01:57,889 even if it does not contain any `.py` files. 2024-07-09T19:01:57,890 On the other hand, currently there is no concept of package data 2024-07-09T19:01:57,891 directory, all directories are treated like packages. 2024-07-09T19:01:57,891 ******************************************************************************** 2024-07-09T19:01:57,892 !! 2024-07-09T19:01:57,893 check.warn(importable) 2024-07-09T19:01:57,893 /tmp/pip-build-env-abllg6kk/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.multivcfanalyzer' is absent from the `packages` configuration. 2024-07-09T19:01:57,893 !! 2024-07-09T19:01:57,894 ******************************************************************************** 2024-07-09T19:01:57,894 ############################ 2024-07-09T19:01:57,895 # Package would be ignored # 2024-07-09T19:01:57,895 ############################ 2024-07-09T19:01:57,896 Python recognizes 'multiqc.modules.multivcfanalyzer' as an importable package[^1], 2024-07-09T19:01:57,896 but it is absent from setuptools' `packages` configuration. 2024-07-09T19:01:57,897 This leads to an ambiguous overall configuration. If you want to distribute this 2024-07-09T19:01:57,897 package, please make sure that 'multiqc.modules.multivcfanalyzer' is explicitly added 2024-07-09T19:01:57,898 to the `packages` configuration field. 2024-07-09T19:01:57,899 Alternatively, you can also rely on setuptools' discovery methods 2024-07-09T19:01:57,899 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-07-09T19:01:57,899 instead of `find_packages(...)`/`find:`). 2024-07-09T19:01:57,900 You can read more about "package discovery" on setuptools documentation page: 2024-07-09T19:01:57,901 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-07-09T19:01:57,902 If you don't want 'multiqc.modules.multivcfanalyzer' to be distributed and are 2024-07-09T19:01:57,903 already explicitly excluding 'multiqc.modules.multivcfanalyzer' via 2024-07-09T19:01:57,903 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-07-09T19:01:57,904 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-07-09T19:01:57,904 combination with a more fine grained `package-data` configuration. 2024-07-09T19:01:57,905 You can read more about "package data files" on setuptools documentation page: 2024-07-09T19:01:57,906 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-07-09T19:01:57,908 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-07-09T19:01:57,908 even if it does not contain any `.py` files. 2024-07-09T19:01:57,909 On the other hand, currently there is no concept of package data 2024-07-09T19:01:57,909 directory, all directories are treated like packages. 2024-07-09T19:01:57,910 ******************************************************************************** 2024-07-09T19:01:57,911 !! 2024-07-09T19:01:57,911 check.warn(importable) 2024-07-09T19:01:57,912 /tmp/pip-build-env-abllg6kk/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.nanostat' is absent from the `packages` configuration. 2024-07-09T19:01:57,912 !! 2024-07-09T19:01:57,913 ******************************************************************************** 2024-07-09T19:01:57,914 ############################ 2024-07-09T19:01:57,914 # Package would be ignored # 2024-07-09T19:01:57,914 ############################ 2024-07-09T19:01:57,915 Python recognizes 'multiqc.modules.nanostat' as an importable package[^1], 2024-07-09T19:01:57,916 but it is absent from setuptools' `packages` configuration. 2024-07-09T19:01:57,917 This leads to an ambiguous overall configuration. If you want to distribute this 2024-07-09T19:01:57,917 package, please make sure that 'multiqc.modules.nanostat' is explicitly added 2024-07-09T19:01:57,918 to the `packages` configuration field. 2024-07-09T19:01:57,919 Alternatively, you can also rely on setuptools' discovery methods 2024-07-09T19:01:57,919 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-07-09T19:01:57,919 instead of `find_packages(...)`/`find:`). 2024-07-09T19:01:57,920 You can read more about "package discovery" on setuptools documentation page: 2024-07-09T19:01:57,921 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-07-09T19:01:57,921 If you don't want 'multiqc.modules.nanostat' to be distributed and are 2024-07-09T19:01:57,922 already explicitly excluding 'multiqc.modules.nanostat' via 2024-07-09T19:01:57,922 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-07-09T19:01:57,923 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-07-09T19:01:57,923 combination with a more fine grained `package-data` configuration. 2024-07-09T19:01:57,924 You can read more about "package data files" on setuptools documentation page: 2024-07-09T19:01:57,924 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-07-09T19:01:57,925 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-07-09T19:01:57,926 even if it does not contain any `.py` files. 2024-07-09T19:01:57,926 On the other hand, currently there is no concept of package data 2024-07-09T19:01:57,926 directory, all directories are treated like packages. 2024-07-09T19:01:57,927 ******************************************************************************** 2024-07-09T19:01:57,928 !! 2024-07-09T19:01:57,929 check.warn(importable) 2024-07-09T19:01:57,929 /tmp/pip-build-env-abllg6kk/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.nextclade' is absent from the `packages` configuration. 2024-07-09T19:01:57,930 !! 2024-07-09T19:01:57,931 ******************************************************************************** 2024-07-09T19:01:57,931 ############################ 2024-07-09T19:01:57,932 # Package would be ignored # 2024-07-09T19:01:57,932 ############################ 2024-07-09T19:01:57,933 Python recognizes 'multiqc.modules.nextclade' as an importable package[^1], 2024-07-09T19:01:57,933 but it is absent from setuptools' `packages` configuration. 2024-07-09T19:01:57,934 This leads to an ambiguous overall configuration. If you want to distribute this 2024-07-09T19:01:57,935 package, please make sure that 'multiqc.modules.nextclade' is explicitly added 2024-07-09T19:01:57,935 to the `packages` configuration field. 2024-07-09T19:01:57,936 Alternatively, you can also rely on setuptools' discovery methods 2024-07-09T19:01:57,937 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-07-09T19:01:57,937 instead of `find_packages(...)`/`find:`). 2024-07-09T19:01:57,938 You can read more about "package discovery" on setuptools documentation page: 2024-07-09T19:01:57,939 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-07-09T19:01:57,940 If you don't want 'multiqc.modules.nextclade' to be distributed and are 2024-07-09T19:01:57,941 already explicitly excluding 'multiqc.modules.nextclade' via 2024-07-09T19:01:57,941 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-07-09T19:01:57,942 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-07-09T19:01:57,942 combination with a more fine grained `package-data` configuration. 2024-07-09T19:01:57,943 You can read more about "package data files" on setuptools documentation page: 2024-07-09T19:01:57,944 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-07-09T19:01:57,945 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-07-09T19:01:57,946 even if it does not contain any `.py` files. 2024-07-09T19:01:57,946 On the other hand, currently there is no concept of package data 2024-07-09T19:01:57,946 directory, all directories are treated like packages. 2024-07-09T19:01:57,947 ******************************************************************************** 2024-07-09T19:01:57,947 !! 2024-07-09T19:01:57,948 check.warn(importable) 2024-07-09T19:01:57,948 /tmp/pip-build-env-abllg6kk/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.ngsderive' is absent from the `packages` configuration. 2024-07-09T19:01:57,948 !! 2024-07-09T19:01:57,949 ******************************************************************************** 2024-07-09T19:01:57,949 ############################ 2024-07-09T19:01:57,950 # Package would be ignored # 2024-07-09T19:01:57,950 ############################ 2024-07-09T19:01:57,951 Python recognizes 'multiqc.modules.ngsderive' as an importable package[^1], 2024-07-09T19:01:57,951 but it is absent from setuptools' `packages` configuration. 2024-07-09T19:01:57,952 This leads to an ambiguous overall configuration. If you want to distribute this 2024-07-09T19:01:57,952 package, please make sure that 'multiqc.modules.ngsderive' is explicitly added 2024-07-09T19:01:57,953 to the `packages` configuration field. 2024-07-09T19:01:57,954 Alternatively, you can also rely on setuptools' discovery methods 2024-07-09T19:01:57,954 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-07-09T19:01:57,955 instead of `find_packages(...)`/`find:`). 2024-07-09T19:01:57,956 You can read more about "package discovery" on setuptools documentation page: 2024-07-09T19:01:57,957 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-07-09T19:01:57,958 If you don't want 'multiqc.modules.ngsderive' to be distributed and are 2024-07-09T19:01:57,958 already explicitly excluding 'multiqc.modules.ngsderive' via 2024-07-09T19:01:57,959 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-07-09T19:01:57,959 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-07-09T19:01:57,960 combination with a more fine grained `package-data` configuration. 2024-07-09T19:01:57,961 You can read more about "package data files" on setuptools documentation page: 2024-07-09T19:01:57,962 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-07-09T19:01:57,963 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-07-09T19:01:57,964 even if it does not contain any `.py` files. 2024-07-09T19:01:57,964 On the other hand, currently there is no concept of package data 2024-07-09T19:01:57,965 directory, all directories are treated like packages. 2024-07-09T19:01:57,965 ******************************************************************************** 2024-07-09T19:01:57,966 !! 2024-07-09T19:01:57,967 check.warn(importable) 2024-07-09T19:01:57,967 /tmp/pip-build-env-abllg6kk/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.nonpareil' is absent from the `packages` configuration. 2024-07-09T19:01:57,968 !! 2024-07-09T19:01:57,969 ******************************************************************************** 2024-07-09T19:01:57,970 ############################ 2024-07-09T19:01:57,970 # Package would be ignored # 2024-07-09T19:01:57,971 ############################ 2024-07-09T19:01:57,971 Python recognizes 'multiqc.modules.nonpareil' as an importable package[^1], 2024-07-09T19:01:57,972 but it is absent from setuptools' `packages` configuration. 2024-07-09T19:01:57,973 This leads to an ambiguous overall configuration. If you want to distribute this 2024-07-09T19:01:57,973 package, please make sure that 'multiqc.modules.nonpareil' is explicitly added 2024-07-09T19:01:57,973 to the `packages` configuration field. 2024-07-09T19:01:57,974 Alternatively, you can also rely on setuptools' discovery methods 2024-07-09T19:01:57,974 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-07-09T19:01:57,975 instead of `find_packages(...)`/`find:`). 2024-07-09T19:01:57,975 You can read more about "package discovery" on setuptools documentation page: 2024-07-09T19:01:57,976 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-07-09T19:01:57,977 If you don't want 'multiqc.modules.nonpareil' to be distributed and are 2024-07-09T19:01:57,977 already explicitly excluding 'multiqc.modules.nonpareil' via 2024-07-09T19:01:57,978 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-07-09T19:01:57,978 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-07-09T19:01:57,978 combination with a more fine grained `package-data` configuration. 2024-07-09T19:01:57,979 You can read more about "package data files" on setuptools documentation page: 2024-07-09T19:01:57,980 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-07-09T19:01:57,981 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-07-09T19:01:57,982 even if it does not contain any `.py` files. 2024-07-09T19:01:57,983 On the other hand, currently there is no concept of package data 2024-07-09T19:01:57,983 directory, all directories are treated like packages. 2024-07-09T19:01:57,984 ******************************************************************************** 2024-07-09T19:01:57,985 !! 2024-07-09T19:01:57,985 check.warn(importable) 2024-07-09T19:01:57,986 /tmp/pip-build-env-abllg6kk/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.odgi' is absent from the `packages` configuration. 2024-07-09T19:01:57,986 !! 2024-07-09T19:01:57,987 ******************************************************************************** 2024-07-09T19:01:57,988 ############################ 2024-07-09T19:01:57,989 # Package would be ignored # 2024-07-09T19:01:57,989 ############################ 2024-07-09T19:01:57,989 Python recognizes 'multiqc.modules.odgi' as an importable package[^1], 2024-07-09T19:01:57,990 but it is absent from setuptools' `packages` configuration. 2024-07-09T19:01:57,991 This leads to an ambiguous overall configuration. If you want to distribute this 2024-07-09T19:01:57,991 package, please make sure that 'multiqc.modules.odgi' is explicitly added 2024-07-09T19:01:57,992 to the `packages` configuration field. 2024-07-09T19:01:57,993 Alternatively, you can also rely on setuptools' discovery methods 2024-07-09T19:01:57,993 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-07-09T19:01:57,994 instead of `find_packages(...)`/`find:`). 2024-07-09T19:01:57,995 You can read more about "package discovery" on setuptools documentation page: 2024-07-09T19:01:57,996 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-07-09T19:01:57,997 If you don't want 'multiqc.modules.odgi' to be distributed and are 2024-07-09T19:01:57,998 already explicitly excluding 'multiqc.modules.odgi' via 2024-07-09T19:01:57,998 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-07-09T19:01:57,998 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-07-09T19:01:57,998 combination with a more fine grained `package-data` configuration. 2024-07-09T19:01:57,999 You can read more about "package data files" on setuptools documentation page: 2024-07-09T19:01:58,000 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-07-09T19:01:58,001 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-07-09T19:01:58,001 even if it does not contain any `.py` files. 2024-07-09T19:01:58,001 On the other hand, currently there is no concept of package data 2024-07-09T19:01:58,002 directory, all directories are treated like packages. 2024-07-09T19:01:58,002 ******************************************************************************** 2024-07-09T19:01:58,003 !! 2024-07-09T19:01:58,003 check.warn(importable) 2024-07-09T19:01:58,004 /tmp/pip-build-env-abllg6kk/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.optitype' is absent from the `packages` configuration. 2024-07-09T19:01:58,004 !! 2024-07-09T19:01:58,005 ******************************************************************************** 2024-07-09T19:01:58,005 ############################ 2024-07-09T19:01:58,006 # Package would be ignored # 2024-07-09T19:01:58,006 ############################ 2024-07-09T19:01:58,007 Python recognizes 'multiqc.modules.optitype' as an importable package[^1], 2024-07-09T19:01:58,007 but it is absent from setuptools' `packages` configuration. 2024-07-09T19:01:58,009 This leads to an ambiguous overall configuration. If you want to distribute this 2024-07-09T19:01:58,009 package, please make sure that 'multiqc.modules.optitype' is explicitly added 2024-07-09T19:01:58,010 to the `packages` configuration field. 2024-07-09T19:01:58,011 Alternatively, you can also rely on setuptools' discovery methods 2024-07-09T19:01:58,011 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-07-09T19:01:58,012 instead of `find_packages(...)`/`find:`). 2024-07-09T19:01:58,013 You can read more about "package discovery" on setuptools documentation page: 2024-07-09T19:01:58,014 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-07-09T19:01:58,015 If you don't want 'multiqc.modules.optitype' to be distributed and are 2024-07-09T19:01:58,015 already explicitly excluding 'multiqc.modules.optitype' via 2024-07-09T19:01:58,016 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-07-09T19:01:58,016 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-07-09T19:01:58,017 combination with a more fine grained `package-data` configuration. 2024-07-09T19:01:58,017 You can read more about "package data files" on setuptools documentation page: 2024-07-09T19:01:58,018 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-07-09T19:01:58,020 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-07-09T19:01:58,020 even if it does not contain any `.py` files. 2024-07-09T19:01:58,021 On the other hand, currently there is no concept of package data 2024-07-09T19:01:58,022 directory, all directories are treated like packages. 2024-07-09T19:01:58,022 ******************************************************************************** 2024-07-09T19:01:58,023 !! 2024-07-09T19:01:58,024 check.warn(importable) 2024-07-09T19:01:58,024 /tmp/pip-build-env-abllg6kk/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.pangolin' is absent from the `packages` configuration. 2024-07-09T19:01:58,024 !! 2024-07-09T19:01:58,025 ******************************************************************************** 2024-07-09T19:01:58,025 ############################ 2024-07-09T19:01:58,026 # Package would be ignored # 2024-07-09T19:01:58,026 ############################ 2024-07-09T19:01:58,026 Python recognizes 'multiqc.modules.pangolin' as an importable package[^1], 2024-07-09T19:01:58,027 but it is absent from setuptools' `packages` configuration. 2024-07-09T19:01:58,027 This leads to an ambiguous overall configuration. If you want to distribute this 2024-07-09T19:01:58,028 package, please make sure that 'multiqc.modules.pangolin' is explicitly added 2024-07-09T19:01:58,028 to the `packages` configuration field. 2024-07-09T19:01:58,029 Alternatively, you can also rely on setuptools' discovery methods 2024-07-09T19:01:58,029 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-07-09T19:01:58,029 instead of `find_packages(...)`/`find:`). 2024-07-09T19:01:58,030 You can read more about "package discovery" on setuptools documentation page: 2024-07-09T19:01:58,031 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-07-09T19:01:58,032 If you don't want 'multiqc.modules.pangolin' to be distributed and are 2024-07-09T19:01:58,032 already explicitly excluding 'multiqc.modules.pangolin' via 2024-07-09T19:01:58,033 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-07-09T19:01:58,033 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-07-09T19:01:58,034 combination with a more fine grained `package-data` configuration. 2024-07-09T19:01:58,035 You can read more about "package data files" on setuptools documentation page: 2024-07-09T19:01:58,036 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-07-09T19:01:58,037 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-07-09T19:01:58,038 even if it does not contain any `.py` files. 2024-07-09T19:01:58,038 On the other hand, currently there is no concept of package data 2024-07-09T19:01:58,039 directory, all directories are treated like packages. 2024-07-09T19:01:58,040 ******************************************************************************** 2024-07-09T19:01:58,041 !! 2024-07-09T19:01:58,041 check.warn(importable) 2024-07-09T19:01:58,042 /tmp/pip-build-env-abllg6kk/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.pbmarkdup' is absent from the `packages` configuration. 2024-07-09T19:01:58,042 !! 2024-07-09T19:01:58,043 ******************************************************************************** 2024-07-09T19:01:58,044 ############################ 2024-07-09T19:01:58,044 # Package would be ignored # 2024-07-09T19:01:58,045 ############################ 2024-07-09T19:01:58,045 Python recognizes 'multiqc.modules.pbmarkdup' as an importable package[^1], 2024-07-09T19:01:58,046 but it is absent from setuptools' `packages` configuration. 2024-07-09T19:01:58,047 This leads to an ambiguous overall configuration. If you want to distribute this 2024-07-09T19:01:58,047 package, please make sure that 'multiqc.modules.pbmarkdup' is explicitly added 2024-07-09T19:01:58,048 to the `packages` configuration field. 2024-07-09T19:01:58,049 Alternatively, you can also rely on setuptools' discovery methods 2024-07-09T19:01:58,050 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-07-09T19:01:58,050 instead of `find_packages(...)`/`find:`). 2024-07-09T19:01:58,051 You can read more about "package discovery" on setuptools documentation page: 2024-07-09T19:01:58,052 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-07-09T19:01:58,052 If you don't want 'multiqc.modules.pbmarkdup' to be distributed and are 2024-07-09T19:01:58,053 already explicitly excluding 'multiqc.modules.pbmarkdup' via 2024-07-09T19:01:58,053 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-07-09T19:01:58,053 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-07-09T19:01:58,054 combination with a more fine grained `package-data` configuration. 2024-07-09T19:01:58,054 You can read more about "package data files" on setuptools documentation page: 2024-07-09T19:01:58,055 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-07-09T19:01:58,056 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-07-09T19:01:58,057 even if it does not contain any `.py` files. 2024-07-09T19:01:58,057 On the other hand, currently there is no concept of package data 2024-07-09T19:01:58,057 directory, all directories are treated like packages. 2024-07-09T19:01:58,058 ******************************************************************************** 2024-07-09T19:01:58,059 !! 2024-07-09T19:01:58,059 check.warn(importable) 2024-07-09T19:01:58,060 /tmp/pip-build-env-abllg6kk/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.peddy' is absent from the `packages` configuration. 2024-07-09T19:01:58,060 !! 2024-07-09T19:01:58,061 ******************************************************************************** 2024-07-09T19:01:58,062 ############################ 2024-07-09T19:01:58,062 # Package would be ignored # 2024-07-09T19:01:58,063 ############################ 2024-07-09T19:01:58,063 Python recognizes 'multiqc.modules.peddy' as an importable package[^1], 2024-07-09T19:01:58,064 but it is absent from setuptools' `packages` configuration. 2024-07-09T19:01:58,065 This leads to an ambiguous overall configuration. If you want to distribute this 2024-07-09T19:01:58,066 package, please make sure that 'multiqc.modules.peddy' is explicitly added 2024-07-09T19:01:58,066 to the `packages` configuration field. 2024-07-09T19:01:58,067 Alternatively, you can also rely on setuptools' discovery methods 2024-07-09T19:01:58,067 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-07-09T19:01:58,068 instead of `find_packages(...)`/`find:`). 2024-07-09T19:01:58,069 You can read more about "package discovery" on setuptools documentation page: 2024-07-09T19:01:58,070 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-07-09T19:01:58,071 If you don't want 'multiqc.modules.peddy' to be distributed and are 2024-07-09T19:01:58,071 already explicitly excluding 'multiqc.modules.peddy' via 2024-07-09T19:01:58,071 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-07-09T19:01:58,072 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-07-09T19:01:58,073 combination with a more fine grained `package-data` configuration. 2024-07-09T19:01:58,074 You can read more about "package data files" on setuptools documentation page: 2024-07-09T19:01:58,075 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-07-09T19:01:58,077 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-07-09T19:01:58,077 even if it does not contain any `.py` files. 2024-07-09T19:01:58,078 On the other hand, currently there is no concept of package data 2024-07-09T19:01:58,078 directory, all directories are treated like packages. 2024-07-09T19:01:58,078 ******************************************************************************** 2024-07-09T19:01:58,079 !! 2024-07-09T19:01:58,079 check.warn(importable) 2024-07-09T19:01:58,080 /tmp/pip-build-env-abllg6kk/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.phantompeakqualtools' is absent from the `packages` configuration. 2024-07-09T19:01:58,080 !! 2024-07-09T19:01:58,081 ******************************************************************************** 2024-07-09T19:01:58,081 ############################ 2024-07-09T19:01:58,082 # Package would be ignored # 2024-07-09T19:01:58,082 ############################ 2024-07-09T19:01:58,082 Python recognizes 'multiqc.modules.phantompeakqualtools' as an importable package[^1], 2024-07-09T19:01:58,083 but it is absent from setuptools' `packages` configuration. 2024-07-09T19:01:58,083 This leads to an ambiguous overall configuration. If you want to distribute this 2024-07-09T19:01:58,084 package, please make sure that 'multiqc.modules.phantompeakqualtools' is explicitly added 2024-07-09T19:01:58,084 to the `packages` configuration field. 2024-07-09T19:01:58,085 Alternatively, you can also rely on setuptools' discovery methods 2024-07-09T19:01:58,086 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-07-09T19:01:58,086 instead of `find_packages(...)`/`find:`). 2024-07-09T19:01:58,087 You can read more about "package discovery" on setuptools documentation page: 2024-07-09T19:01:58,088 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-07-09T19:01:58,089 If you don't want 'multiqc.modules.phantompeakqualtools' to be distributed and are 2024-07-09T19:01:58,089 already explicitly excluding 'multiqc.modules.phantompeakqualtools' via 2024-07-09T19:01:58,090 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-07-09T19:01:58,090 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-07-09T19:01:58,091 combination with a more fine grained `package-data` configuration. 2024-07-09T19:01:58,092 You can read more about "package data files" on setuptools documentation page: 2024-07-09T19:01:58,093 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-07-09T19:01:58,094 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-07-09T19:01:58,095 even if it does not contain any `.py` files. 2024-07-09T19:01:58,095 On the other hand, currently there is no concept of package data 2024-07-09T19:01:58,096 directory, all directories are treated like packages. 2024-07-09T19:01:58,096 ******************************************************************************** 2024-07-09T19:01:58,097 !! 2024-07-09T19:01:58,097 check.warn(importable) 2024-07-09T19:01:58,098 /tmp/pip-build-env-abllg6kk/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.picard' is absent from the `packages` configuration. 2024-07-09T19:01:58,098 !! 2024-07-09T19:01:58,099 ******************************************************************************** 2024-07-09T19:01:58,100 ############################ 2024-07-09T19:01:58,100 # Package would be ignored # 2024-07-09T19:01:58,101 ############################ 2024-07-09T19:01:58,101 Python recognizes 'multiqc.modules.picard' as an importable package[^1], 2024-07-09T19:01:58,102 but it is absent from setuptools' `packages` configuration. 2024-07-09T19:01:58,103 This leads to an ambiguous overall configuration. If you want to distribute this 2024-07-09T19:01:58,103 package, please make sure that 'multiqc.modules.picard' is explicitly added 2024-07-09T19:01:58,103 to the `packages` configuration field. 2024-07-09T19:01:58,104 Alternatively, you can also rely on setuptools' discovery methods 2024-07-09T19:01:58,105 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-07-09T19:01:58,105 instead of `find_packages(...)`/`find:`). 2024-07-09T19:01:58,106 You can read more about "package discovery" on setuptools documentation page: 2024-07-09T19:01:58,106 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-07-09T19:01:58,107 If you don't want 'multiqc.modules.picard' to be distributed and are 2024-07-09T19:01:58,107 already explicitly excluding 'multiqc.modules.picard' via 2024-07-09T19:01:58,108 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-07-09T19:01:58,108 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-07-09T19:01:58,108 combination with a more fine grained `package-data` configuration. 2024-07-09T19:01:58,109 You can read more about "package data files" on setuptools documentation page: 2024-07-09T19:01:58,110 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-07-09T19:01:58,111 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-07-09T19:01:58,111 even if it does not contain any `.py` files. 2024-07-09T19:01:58,112 On the other hand, currently there is no concept of package data 2024-07-09T19:01:58,113 directory, all directories are treated like packages. 2024-07-09T19:01:58,113 ******************************************************************************** 2024-07-09T19:01:58,114 !! 2024-07-09T19:01:58,115 check.warn(importable) 2024-07-09T19:01:58,115 /tmp/pip-build-env-abllg6kk/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.picard.tests' is absent from the `packages` configuration. 2024-07-09T19:01:58,116 !! 2024-07-09T19:01:58,117 ******************************************************************************** 2024-07-09T19:01:58,118 ############################ 2024-07-09T19:01:58,118 # Package would be ignored # 2024-07-09T19:01:58,119 ############################ 2024-07-09T19:01:58,119 Python recognizes 'multiqc.modules.picard.tests' as an importable package[^1], 2024-07-09T19:01:58,120 but it is absent from setuptools' `packages` configuration. 2024-07-09T19:01:58,121 This leads to an ambiguous overall configuration. If you want to distribute this 2024-07-09T19:01:58,121 package, please make sure that 'multiqc.modules.picard.tests' is explicitly added 2024-07-09T19:01:58,121 to the `packages` configuration field. 2024-07-09T19:01:58,122 Alternatively, you can also rely on setuptools' discovery methods 2024-07-09T19:01:58,123 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-07-09T19:01:58,123 instead of `find_packages(...)`/`find:`). 2024-07-09T19:01:58,124 You can read more about "package discovery" on setuptools documentation page: 2024-07-09T19:01:58,125 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-07-09T19:01:58,126 If you don't want 'multiqc.modules.picard.tests' to be distributed and are 2024-07-09T19:01:58,127 already explicitly excluding 'multiqc.modules.picard.tests' via 2024-07-09T19:01:58,127 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-07-09T19:01:58,128 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-07-09T19:01:58,128 combination with a more fine grained `package-data` configuration. 2024-07-09T19:01:58,129 You can read more about "package data files" on setuptools documentation page: 2024-07-09T19:01:58,130 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-07-09T19:01:58,131 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-07-09T19:01:58,131 even if it does not contain any `.py` files. 2024-07-09T19:01:58,131 On the other hand, currently there is no concept of package data 2024-07-09T19:01:58,132 directory, all directories are treated like packages. 2024-07-09T19:01:58,132 ******************************************************************************** 2024-07-09T19:01:58,133 !! 2024-07-09T19:01:58,133 check.warn(importable) 2024-07-09T19:01:58,134 /tmp/pip-build-env-abllg6kk/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.porechop' is absent from the `packages` configuration. 2024-07-09T19:01:58,134 !! 2024-07-09T19:01:58,135 ******************************************************************************** 2024-07-09T19:01:58,135 ############################ 2024-07-09T19:01:58,135 # Package would be ignored # 2024-07-09T19:01:58,136 ############################ 2024-07-09T19:01:58,136 Python recognizes 'multiqc.modules.porechop' as an importable package[^1], 2024-07-09T19:01:58,137 but it is absent from setuptools' `packages` configuration. 2024-07-09T19:01:58,138 This leads to an ambiguous overall configuration. If you want to distribute this 2024-07-09T19:01:58,138 package, please make sure that 'multiqc.modules.porechop' is explicitly added 2024-07-09T19:01:58,139 to the `packages` configuration field. 2024-07-09T19:01:58,140 Alternatively, you can also rely on setuptools' discovery methods 2024-07-09T19:01:58,140 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-07-09T19:01:58,141 instead of `find_packages(...)`/`find:`). 2024-07-09T19:01:58,142 You can read more about "package discovery" on setuptools documentation page: 2024-07-09T19:01:58,143 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-07-09T19:01:58,144 If you don't want 'multiqc.modules.porechop' to be distributed and are 2024-07-09T19:01:58,144 already explicitly excluding 'multiqc.modules.porechop' via 2024-07-09T19:01:58,145 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-07-09T19:01:58,145 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-07-09T19:01:58,146 combination with a more fine grained `package-data` configuration. 2024-07-09T19:01:58,147 You can read more about "package data files" on setuptools documentation page: 2024-07-09T19:01:58,148 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-07-09T19:01:58,149 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-07-09T19:01:58,150 even if it does not contain any `.py` files. 2024-07-09T19:01:58,150 On the other hand, currently there is no concept of package data 2024-07-09T19:01:58,150 directory, all directories are treated like packages. 2024-07-09T19:01:58,151 ******************************************************************************** 2024-07-09T19:01:58,152 !! 2024-07-09T19:01:58,153 check.warn(importable) 2024-07-09T19:01:58,153 /tmp/pip-build-env-abllg6kk/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.preseq' is absent from the `packages` configuration. 2024-07-09T19:01:58,154 !! 2024-07-09T19:01:58,155 ******************************************************************************** 2024-07-09T19:01:58,155 ############################ 2024-07-09T19:01:58,155 # Package would be ignored # 2024-07-09T19:01:58,156 ############################ 2024-07-09T19:01:58,156 Python recognizes 'multiqc.modules.preseq' as an importable package[^1], 2024-07-09T19:01:58,156 but it is absent from setuptools' `packages` configuration. 2024-07-09T19:01:58,157 This leads to an ambiguous overall configuration. If you want to distribute this 2024-07-09T19:01:58,157 package, please make sure that 'multiqc.modules.preseq' is explicitly added 2024-07-09T19:01:58,158 to the `packages` configuration field. 2024-07-09T19:01:58,158 Alternatively, you can also rely on setuptools' discovery methods 2024-07-09T19:01:58,159 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-07-09T19:01:58,159 instead of `find_packages(...)`/`find:`). 2024-07-09T19:01:58,160 You can read more about "package discovery" on setuptools documentation page: 2024-07-09T19:01:58,160 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-07-09T19:01:58,161 If you don't want 'multiqc.modules.preseq' to be distributed and are 2024-07-09T19:01:58,161 already explicitly excluding 'multiqc.modules.preseq' via 2024-07-09T19:01:58,162 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-07-09T19:01:58,162 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-07-09T19:01:58,163 combination with a more fine grained `package-data` configuration. 2024-07-09T19:01:58,164 You can read more about "package data files" on setuptools documentation page: 2024-07-09T19:01:58,165 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-07-09T19:01:58,166 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-07-09T19:01:58,167 even if it does not contain any `.py` files. 2024-07-09T19:01:58,167 On the other hand, currently there is no concept of package data 2024-07-09T19:01:58,168 directory, all directories are treated like packages. 2024-07-09T19:01:58,168 ******************************************************************************** 2024-07-09T19:01:58,169 !! 2024-07-09T19:01:58,169 check.warn(importable) 2024-07-09T19:01:58,170 /tmp/pip-build-env-abllg6kk/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.prinseqplusplus' is absent from the `packages` configuration. 2024-07-09T19:01:58,170 !! 2024-07-09T19:01:58,171 ******************************************************************************** 2024-07-09T19:01:58,173 ############################ 2024-07-09T19:01:58,173 # Package would be ignored # 2024-07-09T19:01:58,174 ############################ 2024-07-09T19:01:58,174 Python recognizes 'multiqc.modules.prinseqplusplus' as an importable package[^1], 2024-07-09T19:01:58,175 but it is absent from setuptools' `packages` configuration. 2024-07-09T19:01:58,176 This leads to an ambiguous overall configuration. If you want to distribute this 2024-07-09T19:01:58,176 package, please make sure that 'multiqc.modules.prinseqplusplus' is explicitly added 2024-07-09T19:01:58,177 to the `packages` configuration field. 2024-07-09T19:01:58,178 Alternatively, you can also rely on setuptools' discovery methods 2024-07-09T19:01:58,178 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-07-09T19:01:58,179 instead of `find_packages(...)`/`find:`). 2024-07-09T19:01:58,180 You can read more about "package discovery" on setuptools documentation page: 2024-07-09T19:01:58,181 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-07-09T19:01:58,181 If you don't want 'multiqc.modules.prinseqplusplus' to be distributed and are 2024-07-09T19:01:58,182 already explicitly excluding 'multiqc.modules.prinseqplusplus' via 2024-07-09T19:01:58,182 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-07-09T19:01:58,182 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-07-09T19:01:58,182 combination with a more fine grained `package-data` configuration. 2024-07-09T19:01:58,183 You can read more about "package data files" on setuptools documentation page: 2024-07-09T19:01:58,184 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-07-09T19:01:58,185 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-07-09T19:01:58,186 even if it does not contain any `.py` files. 2024-07-09T19:01:58,186 On the other hand, currently there is no concept of package data 2024-07-09T19:01:58,187 directory, all directories are treated like packages. 2024-07-09T19:01:58,187 ******************************************************************************** 2024-07-09T19:01:58,188 !! 2024-07-09T19:01:58,188 check.warn(importable) 2024-07-09T19:01:58,189 /tmp/pip-build-env-abllg6kk/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.prokka' is absent from the `packages` configuration. 2024-07-09T19:01:58,189 !! 2024-07-09T19:01:58,190 ******************************************************************************** 2024-07-09T19:01:58,190 ############################ 2024-07-09T19:01:58,191 # Package would be ignored # 2024-07-09T19:01:58,192 ############################ 2024-07-09T19:01:58,192 Python recognizes 'multiqc.modules.prokka' as an importable package[^1], 2024-07-09T19:01:58,193 but it is absent from setuptools' `packages` configuration. 2024-07-09T19:01:58,194 This leads to an ambiguous overall configuration. If you want to distribute this 2024-07-09T19:01:58,194 package, please make sure that 'multiqc.modules.prokka' is explicitly added 2024-07-09T19:01:58,195 to the `packages` configuration field. 2024-07-09T19:01:58,196 Alternatively, you can also rely on setuptools' discovery methods 2024-07-09T19:01:58,197 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-07-09T19:01:58,197 instead of `find_packages(...)`/`find:`). 2024-07-09T19:01:58,199 You can read more about "package discovery" on setuptools documentation page: 2024-07-09T19:01:58,199 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-07-09T19:01:58,200 If you don't want 'multiqc.modules.prokka' to be distributed and are 2024-07-09T19:01:58,201 already explicitly excluding 'multiqc.modules.prokka' via 2024-07-09T19:01:58,201 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-07-09T19:01:58,202 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-07-09T19:01:58,202 combination with a more fine grained `package-data` configuration. 2024-07-09T19:01:58,203 You can read more about "package data files" on setuptools documentation page: 2024-07-09T19:01:58,204 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-07-09T19:01:58,206 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-07-09T19:01:58,206 even if it does not contain any `.py` files. 2024-07-09T19:01:58,207 On the other hand, currently there is no concept of package data 2024-07-09T19:01:58,208 directory, all directories are treated like packages. 2024-07-09T19:01:58,208 ******************************************************************************** 2024-07-09T19:01:58,209 !! 2024-07-09T19:01:58,209 check.warn(importable) 2024-07-09T19:01:58,210 /tmp/pip-build-env-abllg6kk/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.purple' is absent from the `packages` configuration. 2024-07-09T19:01:58,210 !! 2024-07-09T19:01:58,211 ******************************************************************************** 2024-07-09T19:01:58,211 ############################ 2024-07-09T19:01:58,211 # Package would be ignored # 2024-07-09T19:01:58,212 ############################ 2024-07-09T19:01:58,212 Python recognizes 'multiqc.modules.purple' as an importable package[^1], 2024-07-09T19:01:58,212 but it is absent from setuptools' `packages` configuration. 2024-07-09T19:01:58,213 This leads to an ambiguous overall configuration. If you want to distribute this 2024-07-09T19:01:58,214 package, please make sure that 'multiqc.modules.purple' is explicitly added 2024-07-09T19:01:58,214 to the `packages` configuration field. 2024-07-09T19:01:58,215 Alternatively, you can also rely on setuptools' discovery methods 2024-07-09T19:01:58,215 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-07-09T19:01:58,215 instead of `find_packages(...)`/`find:`). 2024-07-09T19:01:58,216 You can read more about "package discovery" on setuptools documentation page: 2024-07-09T19:01:58,218 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-07-09T19:01:58,219 If you don't want 'multiqc.modules.purple' to be distributed and are 2024-07-09T19:01:58,219 already explicitly excluding 'multiqc.modules.purple' via 2024-07-09T19:01:58,221 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-07-09T19:01:58,222 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-07-09T19:01:58,222 combination with a more fine grained `package-data` configuration. 2024-07-09T19:01:58,223 You can read more about "package data files" on setuptools documentation page: 2024-07-09T19:01:58,225 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-07-09T19:01:58,226 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-07-09T19:01:58,227 even if it does not contain any `.py` files. 2024-07-09T19:01:58,227 On the other hand, currently there is no concept of package data 2024-07-09T19:01:58,228 directory, all directories are treated like packages. 2024-07-09T19:01:58,228 ******************************************************************************** 2024-07-09T19:01:58,229 !! 2024-07-09T19:01:58,230 check.warn(importable) 2024-07-09T19:01:58,230 /tmp/pip-build-env-abllg6kk/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.pychopper' is absent from the `packages` configuration. 2024-07-09T19:01:58,230 !! 2024-07-09T19:01:58,231 ******************************************************************************** 2024-07-09T19:01:58,232 ############################ 2024-07-09T19:01:58,233 # Package would be ignored # 2024-07-09T19:01:58,233 ############################ 2024-07-09T19:01:58,234 Python recognizes 'multiqc.modules.pychopper' as an importable package[^1], 2024-07-09T19:01:58,234 but it is absent from setuptools' `packages` configuration. 2024-07-09T19:01:58,236 This leads to an ambiguous overall configuration. If you want to distribute this 2024-07-09T19:01:58,237 package, please make sure that 'multiqc.modules.pychopper' is explicitly added 2024-07-09T19:01:58,238 to the `packages` configuration field. 2024-07-09T19:01:58,240 Alternatively, you can also rely on setuptools' discovery methods 2024-07-09T19:01:58,241 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-07-09T19:01:58,241 instead of `find_packages(...)`/`find:`). 2024-07-09T19:01:58,242 You can read more about "package discovery" on setuptools documentation page: 2024-07-09T19:01:58,242 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-07-09T19:01:58,243 If you don't want 'multiqc.modules.pychopper' to be distributed and are 2024-07-09T19:01:58,243 already explicitly excluding 'multiqc.modules.pychopper' via 2024-07-09T19:01:58,243 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-07-09T19:01:58,244 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-07-09T19:01:58,244 combination with a more fine grained `package-data` configuration. 2024-07-09T19:01:58,245 You can read more about "package data files" on setuptools documentation page: 2024-07-09T19:01:58,246 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-07-09T19:01:58,247 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-07-09T19:01:58,247 even if it does not contain any `.py` files. 2024-07-09T19:01:58,247 On the other hand, currently there is no concept of package data 2024-07-09T19:01:58,248 directory, all directories are treated like packages. 2024-07-09T19:01:58,249 ******************************************************************************** 2024-07-09T19:01:58,250 !! 2024-07-09T19:01:58,250 check.warn(importable) 2024-07-09T19:01:58,251 /tmp/pip-build-env-abllg6kk/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.pycoqc' is absent from the `packages` configuration. 2024-07-09T19:01:58,251 !! 2024-07-09T19:01:58,252 ******************************************************************************** 2024-07-09T19:01:58,253 ############################ 2024-07-09T19:01:58,253 # Package would be ignored # 2024-07-09T19:01:58,254 ############################ 2024-07-09T19:01:58,255 Python recognizes 'multiqc.modules.pycoqc' as an importable package[^1], 2024-07-09T19:01:58,255 but it is absent from setuptools' `packages` configuration. 2024-07-09T19:01:58,256 This leads to an ambiguous overall configuration. If you want to distribute this 2024-07-09T19:01:58,257 package, please make sure that 'multiqc.modules.pycoqc' is explicitly added 2024-07-09T19:01:58,257 to the `packages` configuration field. 2024-07-09T19:01:58,258 Alternatively, you can also rely on setuptools' discovery methods 2024-07-09T19:01:58,258 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-07-09T19:01:58,259 instead of `find_packages(...)`/`find:`). 2024-07-09T19:01:58,260 You can read more about "package discovery" on setuptools documentation page: 2024-07-09T19:01:58,261 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-07-09T19:01:58,261 If you don't want 'multiqc.modules.pycoqc' to be distributed and are 2024-07-09T19:01:58,262 already explicitly excluding 'multiqc.modules.pycoqc' via 2024-07-09T19:01:58,263 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-07-09T19:01:58,263 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-07-09T19:01:58,264 combination with a more fine grained `package-data` configuration. 2024-07-09T19:01:58,266 You can read more about "package data files" on setuptools documentation page: 2024-07-09T19:01:58,266 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-07-09T19:01:58,267 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-07-09T19:01:58,268 even if it does not contain any `.py` files. 2024-07-09T19:01:58,268 On the other hand, currently there is no concept of package data 2024-07-09T19:01:58,268 directory, all directories are treated like packages. 2024-07-09T19:01:58,269 ******************************************************************************** 2024-07-09T19:01:58,269 !! 2024-07-09T19:01:58,270 check.warn(importable) 2024-07-09T19:01:58,270 /tmp/pip-build-env-abllg6kk/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.qc3C' is absent from the `packages` configuration. 2024-07-09T19:01:58,270 !! 2024-07-09T19:01:58,271 ******************************************************************************** 2024-07-09T19:01:58,271 ############################ 2024-07-09T19:01:58,272 # Package would be ignored # 2024-07-09T19:01:58,272 ############################ 2024-07-09T19:01:58,273 Python recognizes 'multiqc.modules.qc3C' as an importable package[^1], 2024-07-09T19:01:58,273 but it is absent from setuptools' `packages` configuration. 2024-07-09T19:01:58,274 This leads to an ambiguous overall configuration. If you want to distribute this 2024-07-09T19:01:58,274 package, please make sure that 'multiqc.modules.qc3C' is explicitly added 2024-07-09T19:01:58,274 to the `packages` configuration field. 2024-07-09T19:01:58,275 Alternatively, you can also rely on setuptools' discovery methods 2024-07-09T19:01:58,276 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-07-09T19:01:58,277 instead of `find_packages(...)`/`find:`). 2024-07-09T19:01:58,278 You can read more about "package discovery" on setuptools documentation page: 2024-07-09T19:01:58,279 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-07-09T19:01:58,280 If you don't want 'multiqc.modules.qc3C' to be distributed and are 2024-07-09T19:01:58,281 already explicitly excluding 'multiqc.modules.qc3C' via 2024-07-09T19:01:58,281 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-07-09T19:01:58,282 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-07-09T19:01:58,282 combination with a more fine grained `package-data` configuration. 2024-07-09T19:01:58,283 You can read more about "package data files" on setuptools documentation page: 2024-07-09T19:01:58,284 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-07-09T19:01:58,285 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-07-09T19:01:58,286 even if it does not contain any `.py` files. 2024-07-09T19:01:58,286 On the other hand, currently there is no concept of package data 2024-07-09T19:01:58,287 directory, all directories are treated like packages. 2024-07-09T19:01:58,287 ******************************************************************************** 2024-07-09T19:01:58,288 !! 2024-07-09T19:01:58,289 check.warn(importable) 2024-07-09T19:01:58,289 /tmp/pip-build-env-abllg6kk/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.qorts' is absent from the `packages` configuration. 2024-07-09T19:01:58,290 !! 2024-07-09T19:01:58,291 ******************************************************************************** 2024-07-09T19:01:58,291 ############################ 2024-07-09T19:01:58,292 # Package would be ignored # 2024-07-09T19:01:58,292 ############################ 2024-07-09T19:01:58,293 Python recognizes 'multiqc.modules.qorts' as an importable package[^1], 2024-07-09T19:01:58,293 but it is absent from setuptools' `packages` configuration. 2024-07-09T19:01:58,294 This leads to an ambiguous overall configuration. If you want to distribute this 2024-07-09T19:01:58,294 package, please make sure that 'multiqc.modules.qorts' is explicitly added 2024-07-09T19:01:58,294 to the `packages` configuration field. 2024-07-09T19:01:58,295 Alternatively, you can also rely on setuptools' discovery methods 2024-07-09T19:01:58,295 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-07-09T19:01:58,296 instead of `find_packages(...)`/`find:`). 2024-07-09T19:01:58,297 You can read more about "package discovery" on setuptools documentation page: 2024-07-09T19:01:58,297 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-07-09T19:01:58,298 If you don't want 'multiqc.modules.qorts' to be distributed and are 2024-07-09T19:01:58,298 already explicitly excluding 'multiqc.modules.qorts' via 2024-07-09T19:01:58,299 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-07-09T19:01:58,299 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-07-09T19:01:58,300 combination with a more fine grained `package-data` configuration. 2024-07-09T19:01:58,300 You can read more about "package data files" on setuptools documentation page: 2024-07-09T19:01:58,301 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-07-09T19:01:58,303 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-07-09T19:01:58,304 even if it does not contain any `.py` files. 2024-07-09T19:01:58,304 On the other hand, currently there is no concept of package data 2024-07-09T19:01:58,305 directory, all directories are treated like packages. 2024-07-09T19:01:58,305 ******************************************************************************** 2024-07-09T19:01:58,306 !! 2024-07-09T19:01:58,307 check.warn(importable) 2024-07-09T19:01:58,307 /tmp/pip-build-env-abllg6kk/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.qualimap' is absent from the `packages` configuration. 2024-07-09T19:01:58,308 !! 2024-07-09T19:01:58,309 ******************************************************************************** 2024-07-09T19:01:58,310 ############################ 2024-07-09T19:01:58,310 # Package would be ignored # 2024-07-09T19:01:58,311 ############################ 2024-07-09T19:01:58,311 Python recognizes 'multiqc.modules.qualimap' as an importable package[^1], 2024-07-09T19:01:58,312 but it is absent from setuptools' `packages` configuration. 2024-07-09T19:01:58,313 This leads to an ambiguous overall configuration. If you want to distribute this 2024-07-09T19:01:58,313 package, please make sure that 'multiqc.modules.qualimap' is explicitly added 2024-07-09T19:01:58,314 to the `packages` configuration field. 2024-07-09T19:01:58,314 Alternatively, you can also rely on setuptools' discovery methods 2024-07-09T19:01:58,315 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-07-09T19:01:58,316 instead of `find_packages(...)`/`find:`). 2024-07-09T19:01:58,317 You can read more about "package discovery" on setuptools documentation page: 2024-07-09T19:01:58,318 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-07-09T19:01:58,319 If you don't want 'multiqc.modules.qualimap' to be distributed and are 2024-07-09T19:01:58,319 already explicitly excluding 'multiqc.modules.qualimap' via 2024-07-09T19:01:58,320 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-07-09T19:01:58,321 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-07-09T19:01:58,321 combination with a more fine grained `package-data` configuration. 2024-07-09T19:01:58,321 You can read more about "package data files" on setuptools documentation page: 2024-07-09T19:01:58,322 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-07-09T19:01:58,323 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-07-09T19:01:58,323 even if it does not contain any `.py` files. 2024-07-09T19:01:58,324 On the other hand, currently there is no concept of package data 2024-07-09T19:01:58,324 directory, all directories are treated like packages. 2024-07-09T19:01:58,325 ******************************************************************************** 2024-07-09T19:01:58,325 !! 2024-07-09T19:01:58,326 check.warn(importable) 2024-07-09T19:01:58,326 /tmp/pip-build-env-abllg6kk/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.quast' is absent from the `packages` configuration. 2024-07-09T19:01:58,326 !! 2024-07-09T19:01:58,327 ******************************************************************************** 2024-07-09T19:01:58,327 ############################ 2024-07-09T19:01:58,328 # Package would be ignored # 2024-07-09T19:01:58,328 ############################ 2024-07-09T19:01:58,329 Python recognizes 'multiqc.modules.quast' as an importable package[^1], 2024-07-09T19:01:58,329 but it is absent from setuptools' `packages` configuration. 2024-07-09T19:01:58,330 This leads to an ambiguous overall configuration. If you want to distribute this 2024-07-09T19:01:58,331 package, please make sure that 'multiqc.modules.quast' is explicitly added 2024-07-09T19:01:58,331 to the `packages` configuration field. 2024-07-09T19:01:58,332 Alternatively, you can also rely on setuptools' discovery methods 2024-07-09T19:01:58,333 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-07-09T19:01:58,334 instead of `find_packages(...)`/`find:`). 2024-07-09T19:01:58,335 You can read more about "package discovery" on setuptools documentation page: 2024-07-09T19:01:58,336 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-07-09T19:01:58,337 If you don't want 'multiqc.modules.quast' to be distributed and are 2024-07-09T19:01:58,337 already explicitly excluding 'multiqc.modules.quast' via 2024-07-09T19:01:58,338 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-07-09T19:01:58,338 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-07-09T19:01:58,339 combination with a more fine grained `package-data` configuration. 2024-07-09T19:01:58,340 You can read more about "package data files" on setuptools documentation page: 2024-07-09T19:01:58,341 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-07-09T19:01:58,342 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-07-09T19:01:58,343 even if it does not contain any `.py` files. 2024-07-09T19:01:58,344 On the other hand, currently there is no concept of package data 2024-07-09T19:01:58,344 directory, all directories are treated like packages. 2024-07-09T19:01:58,345 ******************************************************************************** 2024-07-09T19:01:58,346 !! 2024-07-09T19:01:58,346 check.warn(importable) 2024-07-09T19:01:58,347 /tmp/pip-build-env-abllg6kk/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.rna_seqc' is absent from the `packages` configuration. 2024-07-09T19:01:58,347 !! 2024-07-09T19:01:58,348 ******************************************************************************** 2024-07-09T19:01:58,348 ############################ 2024-07-09T19:01:58,349 # Package would be ignored # 2024-07-09T19:01:58,349 ############################ 2024-07-09T19:01:58,349 Python recognizes 'multiqc.modules.rna_seqc' as an importable package[^1], 2024-07-09T19:01:58,350 but it is absent from setuptools' `packages` configuration. 2024-07-09T19:01:58,350 This leads to an ambiguous overall configuration. If you want to distribute this 2024-07-09T19:01:58,351 package, please make sure that 'multiqc.modules.rna_seqc' is explicitly added 2024-07-09T19:01:58,351 to the `packages` configuration field. 2024-07-09T19:01:58,352 Alternatively, you can also rely on setuptools' discovery methods 2024-07-09T19:01:58,352 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-07-09T19:01:58,353 instead of `find_packages(...)`/`find:`). 2024-07-09T19:01:58,353 You can read more about "package discovery" on setuptools documentation page: 2024-07-09T19:01:58,354 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-07-09T19:01:58,355 If you don't want 'multiqc.modules.rna_seqc' to be distributed and are 2024-07-09T19:01:58,355 already explicitly excluding 'multiqc.modules.rna_seqc' via 2024-07-09T19:01:58,356 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-07-09T19:01:58,356 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-07-09T19:01:58,357 combination with a more fine grained `package-data` configuration. 2024-07-09T19:01:58,358 You can read more about "package data files" on setuptools documentation page: 2024-07-09T19:01:58,359 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-07-09T19:01:58,360 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-07-09T19:01:58,361 even if it does not contain any `.py` files. 2024-07-09T19:01:58,361 On the other hand, currently there is no concept of package data 2024-07-09T19:01:58,362 directory, all directories are treated like packages. 2024-07-09T19:01:58,362 ******************************************************************************** 2024-07-09T19:01:58,363 !! 2024-07-09T19:01:58,364 check.warn(importable) 2024-07-09T19:01:58,364 /tmp/pip-build-env-abllg6kk/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.rockhopper' is absent from the `packages` configuration. 2024-07-09T19:01:58,365 !! 2024-07-09T19:01:58,366 ******************************************************************************** 2024-07-09T19:01:58,366 ############################ 2024-07-09T19:01:58,366 # Package would be ignored # 2024-07-09T19:01:58,367 ############################ 2024-07-09T19:01:58,368 Python recognizes 'multiqc.modules.rockhopper' as an importable package[^1], 2024-07-09T19:01:58,368 but it is absent from setuptools' `packages` configuration. 2024-07-09T19:01:58,369 This leads to an ambiguous overall configuration. If you want to distribute this 2024-07-09T19:01:58,370 package, please make sure that 'multiqc.modules.rockhopper' is explicitly added 2024-07-09T19:01:58,370 to the `packages` configuration field. 2024-07-09T19:01:58,371 Alternatively, you can also rely on setuptools' discovery methods 2024-07-09T19:01:58,372 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-07-09T19:01:58,373 instead of `find_packages(...)`/`find:`). 2024-07-09T19:01:58,373 You can read more about "package discovery" on setuptools documentation page: 2024-07-09T19:01:58,374 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-07-09T19:01:58,374 If you don't want 'multiqc.modules.rockhopper' to be distributed and are 2024-07-09T19:01:58,375 already explicitly excluding 'multiqc.modules.rockhopper' via 2024-07-09T19:01:58,375 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-07-09T19:01:58,375 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-07-09T19:01:58,376 combination with a more fine grained `package-data` configuration. 2024-07-09T19:01:58,376 You can read more about "package data files" on setuptools documentation page: 2024-07-09T19:01:58,377 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-07-09T19:01:58,378 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-07-09T19:01:58,378 even if it does not contain any `.py` files. 2024-07-09T19:01:58,379 On the other hand, currently there is no concept of package data 2024-07-09T19:01:58,379 directory, all directories are treated like packages. 2024-07-09T19:01:58,379 ******************************************************************************** 2024-07-09T19:01:58,380 !! 2024-07-09T19:01:58,381 check.warn(importable) 2024-07-09T19:01:58,381 /tmp/pip-build-env-abllg6kk/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.rsem' is absent from the `packages` configuration. 2024-07-09T19:01:58,382 !! 2024-07-09T19:01:58,383 ******************************************************************************** 2024-07-09T19:01:58,383 ############################ 2024-07-09T19:01:58,384 # Package would be ignored # 2024-07-09T19:01:58,384 ############################ 2024-07-09T19:01:58,385 Python recognizes 'multiqc.modules.rsem' as an importable package[^1], 2024-07-09T19:01:58,385 but it is absent from setuptools' `packages` configuration. 2024-07-09T19:01:58,386 This leads to an ambiguous overall configuration. If you want to distribute this 2024-07-09T19:01:58,387 package, please make sure that 'multiqc.modules.rsem' is explicitly added 2024-07-09T19:01:58,387 to the `packages` configuration field. 2024-07-09T19:01:58,389 Alternatively, you can also rely on setuptools' discovery methods 2024-07-09T19:01:58,389 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-07-09T19:01:58,389 instead of `find_packages(...)`/`find:`). 2024-07-09T19:01:58,390 You can read more about "package discovery" on setuptools documentation page: 2024-07-09T19:01:58,391 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-07-09T19:01:58,392 If you don't want 'multiqc.modules.rsem' to be distributed and are 2024-07-09T19:01:58,393 already explicitly excluding 'multiqc.modules.rsem' via 2024-07-09T19:01:58,393 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-07-09T19:01:58,393 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-07-09T19:01:58,394 combination with a more fine grained `package-data` configuration. 2024-07-09T19:01:58,395 You can read more about "package data files" on setuptools documentation page: 2024-07-09T19:01:58,396 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-07-09T19:01:58,398 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-07-09T19:01:58,398 even if it does not contain any `.py` files. 2024-07-09T19:01:58,399 On the other hand, currently there is no concept of package data 2024-07-09T19:01:58,399 directory, all directories are treated like packages. 2024-07-09T19:01:58,399 ******************************************************************************** 2024-07-09T19:01:58,400 !! 2024-07-09T19:01:58,400 check.warn(importable) 2024-07-09T19:01:58,401 /tmp/pip-build-env-abllg6kk/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.rseqc' is absent from the `packages` configuration. 2024-07-09T19:01:58,401 !! 2024-07-09T19:01:58,402 ******************************************************************************** 2024-07-09T19:01:58,402 ############################ 2024-07-09T19:01:58,402 # Package would be ignored # 2024-07-09T19:01:58,403 ############################ 2024-07-09T19:01:58,403 Python recognizes 'multiqc.modules.rseqc' as an importable package[^1], 2024-07-09T19:01:58,403 but it is absent from setuptools' `packages` configuration. 2024-07-09T19:01:58,404 This leads to an ambiguous overall configuration. If you want to distribute this 2024-07-09T19:01:58,405 package, please make sure that 'multiqc.modules.rseqc' is explicitly added 2024-07-09T19:01:58,405 to the `packages` configuration field. 2024-07-09T19:01:58,406 Alternatively, you can also rely on setuptools' discovery methods 2024-07-09T19:01:58,406 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-07-09T19:01:58,407 instead of `find_packages(...)`/`find:`). 2024-07-09T19:01:58,408 You can read more about "package discovery" on setuptools documentation page: 2024-07-09T19:01:58,409 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-07-09T19:01:58,410 If you don't want 'multiqc.modules.rseqc' to be distributed and are 2024-07-09T19:01:58,411 already explicitly excluding 'multiqc.modules.rseqc' via 2024-07-09T19:01:58,411 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-07-09T19:01:58,412 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-07-09T19:01:58,412 combination with a more fine grained `package-data` configuration. 2024-07-09T19:01:58,414 You can read more about "package data files" on setuptools documentation page: 2024-07-09T19:01:58,415 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-07-09T19:01:58,416 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-07-09T19:01:58,417 even if it does not contain any `.py` files. 2024-07-09T19:01:58,417 On the other hand, currently there is no concept of package data 2024-07-09T19:01:58,417 directory, all directories are treated like packages. 2024-07-09T19:01:58,418 ******************************************************************************** 2024-07-09T19:01:58,419 !! 2024-07-09T19:01:58,419 check.warn(importable) 2024-07-09T19:01:58,420 /tmp/pip-build-env-abllg6kk/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.rseqc.assets.js' is absent from the `packages` configuration. 2024-07-09T19:01:58,420 !! 2024-07-09T19:01:58,421 ******************************************************************************** 2024-07-09T19:01:58,421 ############################ 2024-07-09T19:01:58,422 # Package would be ignored # 2024-07-09T19:01:58,422 ############################ 2024-07-09T19:01:58,423 Python recognizes 'multiqc.modules.rseqc.assets.js' as an importable package[^1], 2024-07-09T19:01:58,423 but it is absent from setuptools' `packages` configuration. 2024-07-09T19:01:58,425 This leads to an ambiguous overall configuration. If you want to distribute this 2024-07-09T19:01:58,425 package, please make sure that 'multiqc.modules.rseqc.assets.js' is explicitly added 2024-07-09T19:01:58,425 to the `packages` configuration field. 2024-07-09T19:01:58,426 Alternatively, you can also rely on setuptools' discovery methods 2024-07-09T19:01:58,426 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-07-09T19:01:58,426 instead of `find_packages(...)`/`find:`). 2024-07-09T19:01:58,427 You can read more about "package discovery" on setuptools documentation page: 2024-07-09T19:01:58,428 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-07-09T19:01:58,429 If you don't want 'multiqc.modules.rseqc.assets.js' to be distributed and are 2024-07-09T19:01:58,429 already explicitly excluding 'multiqc.modules.rseqc.assets.js' via 2024-07-09T19:01:58,429 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-07-09T19:01:58,430 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-07-09T19:01:58,430 combination with a more fine grained `package-data` configuration. 2024-07-09T19:01:58,431 You can read more about "package data files" on setuptools documentation page: 2024-07-09T19:01:58,431 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-07-09T19:01:58,432 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-07-09T19:01:58,433 even if it does not contain any `.py` files. 2024-07-09T19:01:58,433 On the other hand, currently there is no concept of package data 2024-07-09T19:01:58,434 directory, all directories are treated like packages. 2024-07-09T19:01:58,434 ******************************************************************************** 2024-07-09T19:01:58,436 !! 2024-07-09T19:01:58,436 check.warn(importable) 2024-07-09T19:01:58,436 /tmp/pip-build-env-abllg6kk/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.salmon' is absent from the `packages` configuration. 2024-07-09T19:01:58,437 !! 2024-07-09T19:01:58,438 ******************************************************************************** 2024-07-09T19:01:58,439 ############################ 2024-07-09T19:01:58,439 # Package would be ignored # 2024-07-09T19:01:58,440 ############################ 2024-07-09T19:01:58,440 Python recognizes 'multiqc.modules.salmon' as an importable package[^1], 2024-07-09T19:01:58,441 but it is absent from setuptools' `packages` configuration. 2024-07-09T19:01:58,442 This leads to an ambiguous overall configuration. If you want to distribute this 2024-07-09T19:01:58,442 package, please make sure that 'multiqc.modules.salmon' is explicitly added 2024-07-09T19:01:58,442 to the `packages` configuration field. 2024-07-09T19:01:58,443 Alternatively, you can also rely on setuptools' discovery methods 2024-07-09T19:01:58,444 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-07-09T19:01:58,445 instead of `find_packages(...)`/`find:`). 2024-07-09T19:01:58,446 You can read more about "package discovery" on setuptools documentation page: 2024-07-09T19:01:58,447 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-07-09T19:01:58,448 If you don't want 'multiqc.modules.salmon' to be distributed and are 2024-07-09T19:01:58,448 already explicitly excluding 'multiqc.modules.salmon' via 2024-07-09T19:01:58,449 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-07-09T19:01:58,449 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-07-09T19:01:58,450 combination with a more fine grained `package-data` configuration. 2024-07-09T19:01:58,451 You can read more about "package data files" on setuptools documentation page: 2024-07-09T19:01:58,451 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-07-09T19:01:58,452 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-07-09T19:01:58,453 even if it does not contain any `.py` files. 2024-07-09T19:01:58,453 On the other hand, currently there is no concept of package data 2024-07-09T19:01:58,453 directory, all directories are treated like packages. 2024-07-09T19:01:58,454 ******************************************************************************** 2024-07-09T19:01:58,454 !! 2024-07-09T19:01:58,455 check.warn(importable) 2024-07-09T19:01:58,455 /tmp/pip-build-env-abllg6kk/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.sambamba' is absent from the `packages` configuration. 2024-07-09T19:01:58,455 !! 2024-07-09T19:01:58,456 ******************************************************************************** 2024-07-09T19:01:58,456 ############################ 2024-07-09T19:01:58,457 # Package would be ignored # 2024-07-09T19:01:58,457 ############################ 2024-07-09T19:01:58,458 Python recognizes 'multiqc.modules.sambamba' as an importable package[^1], 2024-07-09T19:01:58,458 but it is absent from setuptools' `packages` configuration. 2024-07-09T19:01:58,459 This leads to an ambiguous overall configuration. If you want to distribute this 2024-07-09T19:01:58,459 package, please make sure that 'multiqc.modules.sambamba' is explicitly added 2024-07-09T19:01:58,460 to the `packages` configuration field. 2024-07-09T19:01:58,461 Alternatively, you can also rely on setuptools' discovery methods 2024-07-09T19:01:58,461 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-07-09T19:01:58,462 instead of `find_packages(...)`/`find:`). 2024-07-09T19:01:58,463 You can read more about "package discovery" on setuptools documentation page: 2024-07-09T19:01:58,464 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-07-09T19:01:58,465 If you don't want 'multiqc.modules.sambamba' to be distributed and are 2024-07-09T19:01:58,466 already explicitly excluding 'multiqc.modules.sambamba' via 2024-07-09T19:01:58,466 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-07-09T19:01:58,467 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-07-09T19:01:58,467 combination with a more fine grained `package-data` configuration. 2024-07-09T19:01:58,468 You can read more about "package data files" on setuptools documentation page: 2024-07-09T19:01:58,469 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-07-09T19:01:58,470 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-07-09T19:01:58,471 even if it does not contain any `.py` files. 2024-07-09T19:01:58,471 On the other hand, currently there is no concept of package data 2024-07-09T19:01:58,472 directory, all directories are treated like packages. 2024-07-09T19:01:58,472 ******************************************************************************** 2024-07-09T19:01:58,473 !! 2024-07-09T19:01:58,474 check.warn(importable) 2024-07-09T19:01:58,474 /tmp/pip-build-env-abllg6kk/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.samblaster' is absent from the `packages` configuration. 2024-07-09T19:01:58,475 !! 2024-07-09T19:01:58,476 ******************************************************************************** 2024-07-09T19:01:58,476 ############################ 2024-07-09T19:01:58,477 # Package would be ignored # 2024-07-09T19:01:58,477 ############################ 2024-07-09T19:01:58,477 Python recognizes 'multiqc.modules.samblaster' as an importable package[^1], 2024-07-09T19:01:58,478 but it is absent from setuptools' `packages` configuration. 2024-07-09T19:01:58,478 This leads to an ambiguous overall configuration. If you want to distribute this 2024-07-09T19:01:58,479 package, please make sure that 'multiqc.modules.samblaster' is explicitly added 2024-07-09T19:01:58,479 to the `packages` configuration field. 2024-07-09T19:01:58,480 Alternatively, you can also rely on setuptools' discovery methods 2024-07-09T19:01:58,481 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-07-09T19:01:58,481 instead of `find_packages(...)`/`find:`). 2024-07-09T19:01:58,482 You can read more about "package discovery" on setuptools documentation page: 2024-07-09T19:01:58,483 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-07-09T19:01:58,483 If you don't want 'multiqc.modules.samblaster' to be distributed and are 2024-07-09T19:01:58,484 already explicitly excluding 'multiqc.modules.samblaster' via 2024-07-09T19:01:58,484 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-07-09T19:01:58,485 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-07-09T19:01:58,485 combination with a more fine grained `package-data` configuration. 2024-07-09T19:01:58,486 You can read more about "package data files" on setuptools documentation page: 2024-07-09T19:01:58,487 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-07-09T19:01:58,488 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-07-09T19:01:58,489 even if it does not contain any `.py` files. 2024-07-09T19:01:58,490 On the other hand, currently there is no concept of package data 2024-07-09T19:01:58,490 directory, all directories are treated like packages. 2024-07-09T19:01:58,491 ******************************************************************************** 2024-07-09T19:01:58,492 !! 2024-07-09T19:01:58,492 check.warn(importable) 2024-07-09T19:01:58,493 /tmp/pip-build-env-abllg6kk/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.samtools' is absent from the `packages` configuration. 2024-07-09T19:01:58,493 !! 2024-07-09T19:01:58,494 ******************************************************************************** 2024-07-09T19:01:58,494 ############################ 2024-07-09T19:01:58,495 # Package would be ignored # 2024-07-09T19:01:58,495 ############################ 2024-07-09T19:01:58,496 Python recognizes 'multiqc.modules.samtools' as an importable package[^1], 2024-07-09T19:01:58,496 but it is absent from setuptools' `packages` configuration. 2024-07-09T19:01:58,497 This leads to an ambiguous overall configuration. If you want to distribute this 2024-07-09T19:01:58,497 package, please make sure that 'multiqc.modules.samtools' is explicitly added 2024-07-09T19:01:58,498 to the `packages` configuration field. 2024-07-09T19:01:58,499 Alternatively, you can also rely on setuptools' discovery methods 2024-07-09T19:01:58,499 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-07-09T19:01:58,500 instead of `find_packages(...)`/`find:`). 2024-07-09T19:01:58,501 You can read more about "package discovery" on setuptools documentation page: 2024-07-09T19:01:58,502 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-07-09T19:01:58,503 If you don't want 'multiqc.modules.samtools' to be distributed and are 2024-07-09T19:01:58,503 already explicitly excluding 'multiqc.modules.samtools' via 2024-07-09T19:01:58,504 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-07-09T19:01:58,504 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-07-09T19:01:58,505 combination with a more fine grained `package-data` configuration. 2024-07-09T19:01:58,505 You can read more about "package data files" on setuptools documentation page: 2024-07-09T19:01:58,506 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-07-09T19:01:58,507 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-07-09T19:01:58,507 even if it does not contain any `.py` files. 2024-07-09T19:01:58,508 On the other hand, currently there is no concept of package data 2024-07-09T19:01:58,508 directory, all directories are treated like packages. 2024-07-09T19:01:58,509 ******************************************************************************** 2024-07-09T19:01:58,509 !! 2024-07-09T19:01:58,510 check.warn(importable) 2024-07-09T19:01:58,510 /tmp/pip-build-env-abllg6kk/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.samtools.tests' is absent from the `packages` configuration. 2024-07-09T19:01:58,510 !! 2024-07-09T19:01:58,511 ******************************************************************************** 2024-07-09T19:01:58,512 ############################ 2024-07-09T19:01:58,513 # Package would be ignored # 2024-07-09T19:01:58,513 ############################ 2024-07-09T19:01:58,514 Python recognizes 'multiqc.modules.samtools.tests' as an importable package[^1], 2024-07-09T19:01:58,514 but it is absent from setuptools' `packages` configuration. 2024-07-09T19:01:58,515 This leads to an ambiguous overall configuration. If you want to distribute this 2024-07-09T19:01:58,516 package, please make sure that 'multiqc.modules.samtools.tests' is explicitly added 2024-07-09T19:01:58,517 to the `packages` configuration field. 2024-07-09T19:01:58,518 Alternatively, you can also rely on setuptools' discovery methods 2024-07-09T19:01:58,518 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-07-09T19:01:58,519 instead of `find_packages(...)`/`find:`). 2024-07-09T19:01:58,520 You can read more about "package discovery" on setuptools documentation page: 2024-07-09T19:01:58,521 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-07-09T19:01:58,522 If you don't want 'multiqc.modules.samtools.tests' to be distributed and are 2024-07-09T19:01:58,522 already explicitly excluding 'multiqc.modules.samtools.tests' via 2024-07-09T19:01:58,523 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-07-09T19:01:58,523 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-07-09T19:01:58,523 combination with a more fine grained `package-data` configuration. 2024-07-09T19:01:58,524 You can read more about "package data files" on setuptools documentation page: 2024-07-09T19:01:58,526 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-07-09T19:01:58,527 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-07-09T19:01:58,528 even if it does not contain any `.py` files. 2024-07-09T19:01:58,528 On the other hand, currently there is no concept of package data 2024-07-09T19:01:58,529 directory, all directories are treated like packages. 2024-07-09T19:01:58,529 ******************************************************************************** 2024-07-09T19:01:58,530 !! 2024-07-09T19:01:58,530 check.warn(importable) 2024-07-09T19:01:58,531 /tmp/pip-build-env-abllg6kk/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.sargasso' is absent from the `packages` configuration. 2024-07-09T19:01:58,531 !! 2024-07-09T19:01:58,532 ******************************************************************************** 2024-07-09T19:01:58,532 ############################ 2024-07-09T19:01:58,532 # Package would be ignored # 2024-07-09T19:01:58,533 ############################ 2024-07-09T19:01:58,533 Python recognizes 'multiqc.modules.sargasso' as an importable package[^1], 2024-07-09T19:01:58,534 but it is absent from setuptools' `packages` configuration. 2024-07-09T19:01:58,534 This leads to an ambiguous overall configuration. If you want to distribute this 2024-07-09T19:01:58,535 package, please make sure that 'multiqc.modules.sargasso' is explicitly added 2024-07-09T19:01:58,535 to the `packages` configuration field. 2024-07-09T19:01:58,536 Alternatively, you can also rely on setuptools' discovery methods 2024-07-09T19:01:58,536 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-07-09T19:01:58,537 instead of `find_packages(...)`/`find:`). 2024-07-09T19:01:58,537 You can read more about "package discovery" on setuptools documentation page: 2024-07-09T19:01:58,538 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-07-09T19:01:58,539 If you don't want 'multiqc.modules.sargasso' to be distributed and are 2024-07-09T19:01:58,540 already explicitly excluding 'multiqc.modules.sargasso' via 2024-07-09T19:01:58,540 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-07-09T19:01:58,541 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-07-09T19:01:58,542 combination with a more fine grained `package-data` configuration. 2024-07-09T19:01:58,543 You can read more about "package data files" on setuptools documentation page: 2024-07-09T19:01:58,544 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-07-09T19:01:58,546 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-07-09T19:01:58,546 even if it does not contain any `.py` files. 2024-07-09T19:01:58,547 On the other hand, currently there is no concept of package data 2024-07-09T19:01:58,547 directory, all directories are treated like packages. 2024-07-09T19:01:58,548 ******************************************************************************** 2024-07-09T19:01:58,549 !! 2024-07-09T19:01:58,549 check.warn(importable) 2024-07-09T19:01:58,549 /tmp/pip-build-env-abllg6kk/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.seqera_cli' is absent from the `packages` configuration. 2024-07-09T19:01:58,550 !! 2024-07-09T19:01:58,551 ******************************************************************************** 2024-07-09T19:01:58,551 ############################ 2024-07-09T19:01:58,552 # Package would be ignored # 2024-07-09T19:01:58,552 ############################ 2024-07-09T19:01:58,553 Python recognizes 'multiqc.modules.seqera_cli' as an importable package[^1], 2024-07-09T19:01:58,554 but it is absent from setuptools' `packages` configuration. 2024-07-09T19:01:58,555 This leads to an ambiguous overall configuration. If you want to distribute this 2024-07-09T19:01:58,556 package, please make sure that 'multiqc.modules.seqera_cli' is explicitly added 2024-07-09T19:01:58,556 to the `packages` configuration field. 2024-07-09T19:01:58,557 Alternatively, you can also rely on setuptools' discovery methods 2024-07-09T19:01:58,558 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-07-09T19:01:58,558 instead of `find_packages(...)`/`find:`). 2024-07-09T19:01:58,559 You can read more about "package discovery" on setuptools documentation page: 2024-07-09T19:01:58,559 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-07-09T19:01:58,560 If you don't want 'multiqc.modules.seqera_cli' to be distributed and are 2024-07-09T19:01:58,560 already explicitly excluding 'multiqc.modules.seqera_cli' via 2024-07-09T19:01:58,561 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-07-09T19:01:58,561 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-07-09T19:01:58,562 combination with a more fine grained `package-data` configuration. 2024-07-09T19:01:58,562 You can read more about "package data files" on setuptools documentation page: 2024-07-09T19:01:58,563 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-07-09T19:01:58,564 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-07-09T19:01:58,564 even if it does not contain any `.py` files. 2024-07-09T19:01:58,565 On the other hand, currently there is no concept of package data 2024-07-09T19:01:58,565 directory, all directories are treated like packages. 2024-07-09T19:01:58,566 ******************************************************************************** 2024-07-09T19:01:58,566 !! 2024-07-09T19:01:58,567 check.warn(importable) 2024-07-09T19:01:58,567 /tmp/pip-build-env-abllg6kk/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.sequali' is absent from the `packages` configuration. 2024-07-09T19:01:58,568 !! 2024-07-09T19:01:58,569 ******************************************************************************** 2024-07-09T19:01:58,570 ############################ 2024-07-09T19:01:58,570 # Package would be ignored # 2024-07-09T19:01:58,571 ############################ 2024-07-09T19:01:58,571 Python recognizes 'multiqc.modules.sequali' as an importable package[^1], 2024-07-09T19:01:58,572 but it is absent from setuptools' `packages` configuration. 2024-07-09T19:01:58,573 This leads to an ambiguous overall configuration. If you want to distribute this 2024-07-09T19:01:58,573 package, please make sure that 'multiqc.modules.sequali' is explicitly added 2024-07-09T19:01:58,574 to the `packages` configuration field. 2024-07-09T19:01:58,575 Alternatively, you can also rely on setuptools' discovery methods 2024-07-09T19:01:58,575 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-07-09T19:01:58,575 instead of `find_packages(...)`/`find:`). 2024-07-09T19:01:58,576 You can read more about "package discovery" on setuptools documentation page: 2024-07-09T19:01:58,577 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-07-09T19:01:58,578 If you don't want 'multiqc.modules.sequali' to be distributed and are 2024-07-09T19:01:58,579 already explicitly excluding 'multiqc.modules.sequali' via 2024-07-09T19:01:58,579 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-07-09T19:01:58,580 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-07-09T19:01:58,580 combination with a more fine grained `package-data` configuration. 2024-07-09T19:01:58,581 You can read more about "package data files" on setuptools documentation page: 2024-07-09T19:01:58,582 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-07-09T19:01:58,583 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-07-09T19:01:58,584 even if it does not contain any `.py` files. 2024-07-09T19:01:58,584 On the other hand, currently there is no concept of package data 2024-07-09T19:01:58,584 directory, all directories are treated like packages. 2024-07-09T19:01:58,585 ******************************************************************************** 2024-07-09T19:01:58,585 !! 2024-07-09T19:01:58,586 check.warn(importable) 2024-07-09T19:01:58,586 /tmp/pip-build-env-abllg6kk/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.seqwho' is absent from the `packages` configuration. 2024-07-09T19:01:58,586 !! 2024-07-09T19:01:58,587 ******************************************************************************** 2024-07-09T19:01:58,587 ############################ 2024-07-09T19:01:58,588 # Package would be ignored # 2024-07-09T19:01:58,588 ############################ 2024-07-09T19:01:58,589 Python recognizes 'multiqc.modules.seqwho' as an importable package[^1], 2024-07-09T19:01:58,589 but it is absent from setuptools' `packages` configuration. 2024-07-09T19:01:58,590 This leads to an ambiguous overall configuration. If you want to distribute this 2024-07-09T19:01:58,590 package, please make sure that 'multiqc.modules.seqwho' is explicitly added 2024-07-09T19:01:58,590 to the `packages` configuration field. 2024-07-09T19:01:58,591 Alternatively, you can also rely on setuptools' discovery methods 2024-07-09T19:01:58,592 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-07-09T19:01:58,593 instead of `find_packages(...)`/`find:`). 2024-07-09T19:01:58,594 You can read more about "package discovery" on setuptools documentation page: 2024-07-09T19:01:58,595 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-07-09T19:01:58,596 If you don't want 'multiqc.modules.seqwho' to be distributed and are 2024-07-09T19:01:58,597 already explicitly excluding 'multiqc.modules.seqwho' via 2024-07-09T19:01:58,597 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-07-09T19:01:58,598 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-07-09T19:01:58,598 combination with a more fine grained `package-data` configuration. 2024-07-09T19:01:58,599 You can read more about "package data files" on setuptools documentation page: 2024-07-09T19:01:58,600 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-07-09T19:01:58,601 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-07-09T19:01:58,602 even if it does not contain any `.py` files. 2024-07-09T19:01:58,602 On the other hand, currently there is no concept of package data 2024-07-09T19:01:58,603 directory, all directories are treated like packages. 2024-07-09T19:01:58,603 ******************************************************************************** 2024-07-09T19:01:58,604 !! 2024-07-09T19:01:58,605 check.warn(importable) 2024-07-09T19:01:58,605 /tmp/pip-build-env-abllg6kk/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.seqyclean' is absent from the `packages` configuration. 2024-07-09T19:01:58,606 !! 2024-07-09T19:01:58,607 ******************************************************************************** 2024-07-09T19:01:58,607 ############################ 2024-07-09T19:01:58,607 # Package would be ignored # 2024-07-09T19:01:58,608 ############################ 2024-07-09T19:01:58,609 Python recognizes 'multiqc.modules.seqyclean' as an importable package[^1], 2024-07-09T19:01:58,609 but it is absent from setuptools' `packages` configuration. 2024-07-09T19:01:58,610 This leads to an ambiguous overall configuration. If you want to distribute this 2024-07-09T19:01:58,610 package, please make sure that 'multiqc.modules.seqyclean' is explicitly added 2024-07-09T19:01:58,610 to the `packages` configuration field. 2024-07-09T19:01:58,611 Alternatively, you can also rely on setuptools' discovery methods 2024-07-09T19:01:58,611 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-07-09T19:01:58,612 instead of `find_packages(...)`/`find:`). 2024-07-09T19:01:58,613 You can read more about "package discovery" on setuptools documentation page: 2024-07-09T19:01:58,613 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-07-09T19:01:58,614 If you don't want 'multiqc.modules.seqyclean' to be distributed and are 2024-07-09T19:01:58,614 already explicitly excluding 'multiqc.modules.seqyclean' via 2024-07-09T19:01:58,615 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-07-09T19:01:58,615 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-07-09T19:01:58,615 combination with a more fine grained `package-data` configuration. 2024-07-09T19:01:58,616 You can read more about "package data files" on setuptools documentation page: 2024-07-09T19:01:58,617 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-07-09T19:01:58,619 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-07-09T19:01:58,619 even if it does not contain any `.py` files. 2024-07-09T19:01:58,619 On the other hand, currently there is no concept of package data 2024-07-09T19:01:58,620 directory, all directories are treated like packages. 2024-07-09T19:01:58,621 ******************************************************************************** 2024-07-09T19:01:58,622 !! 2024-07-09T19:01:58,622 check.warn(importable) 2024-07-09T19:01:58,623 /tmp/pip-build-env-abllg6kk/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.sexdeterrmine' is absent from the `packages` configuration. 2024-07-09T19:01:58,623 !! 2024-07-09T19:01:58,625 ******************************************************************************** 2024-07-09T19:01:58,625 ############################ 2024-07-09T19:01:58,626 # Package would be ignored # 2024-07-09T19:01:58,627 ############################ 2024-07-09T19:01:58,627 Python recognizes 'multiqc.modules.sexdeterrmine' as an importable package[^1], 2024-07-09T19:01:58,627 but it is absent from setuptools' `packages` configuration. 2024-07-09T19:01:58,629 This leads to an ambiguous overall configuration. If you want to distribute this 2024-07-09T19:01:58,629 package, please make sure that 'multiqc.modules.sexdeterrmine' is explicitly added 2024-07-09T19:01:58,629 to the `packages` configuration field. 2024-07-09T19:01:58,630 Alternatively, you can also rely on setuptools' discovery methods 2024-07-09T19:01:58,631 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-07-09T19:01:58,631 instead of `find_packages(...)`/`find:`). 2024-07-09T19:01:58,633 You can read more about "package discovery" on setuptools documentation page: 2024-07-09T19:01:58,634 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-07-09T19:01:58,635 If you don't want 'multiqc.modules.sexdeterrmine' to be distributed and are 2024-07-09T19:01:58,635 already explicitly excluding 'multiqc.modules.sexdeterrmine' via 2024-07-09T19:01:58,636 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-07-09T19:01:58,637 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-07-09T19:01:58,637 combination with a more fine grained `package-data` configuration. 2024-07-09T19:01:58,638 You can read more about "package data files" on setuptools documentation page: 2024-07-09T19:01:58,638 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-07-09T19:01:58,639 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-07-09T19:01:58,640 even if it does not contain any `.py` files. 2024-07-09T19:01:58,640 On the other hand, currently there is no concept of package data 2024-07-09T19:01:58,640 directory, all directories are treated like packages. 2024-07-09T19:01:58,641 ******************************************************************************** 2024-07-09T19:01:58,641 !! 2024-07-09T19:01:58,642 check.warn(importable) 2024-07-09T19:01:58,642 /tmp/pip-build-env-abllg6kk/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.sickle' is absent from the `packages` configuration. 2024-07-09T19:01:58,642 !! 2024-07-09T19:01:58,643 ******************************************************************************** 2024-07-09T19:01:58,643 ############################ 2024-07-09T19:01:58,644 # Package would be ignored # 2024-07-09T19:01:58,645 ############################ 2024-07-09T19:01:58,645 Python recognizes 'multiqc.modules.sickle' as an importable package[^1], 2024-07-09T19:01:58,646 but it is absent from setuptools' `packages` configuration. 2024-07-09T19:01:58,647 This leads to an ambiguous overall configuration. If you want to distribute this 2024-07-09T19:01:58,647 package, please make sure that 'multiqc.modules.sickle' is explicitly added 2024-07-09T19:01:58,648 to the `packages` configuration field. 2024-07-09T19:01:58,649 Alternatively, you can also rely on setuptools' discovery methods 2024-07-09T19:01:58,650 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-07-09T19:01:58,650 instead of `find_packages(...)`/`find:`). 2024-07-09T19:01:58,651 You can read more about "package discovery" on setuptools documentation page: 2024-07-09T19:01:58,652 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-07-09T19:01:58,653 If you don't want 'multiqc.modules.sickle' to be distributed and are 2024-07-09T19:01:58,654 already explicitly excluding 'multiqc.modules.sickle' via 2024-07-09T19:01:58,654 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-07-09T19:01:58,655 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-07-09T19:01:58,655 combination with a more fine grained `package-data` configuration. 2024-07-09T19:01:58,656 You can read more about "package data files" on setuptools documentation page: 2024-07-09T19:01:58,657 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-07-09T19:01:58,659 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-07-09T19:01:58,659 even if it does not contain any `.py` files. 2024-07-09T19:01:58,660 On the other hand, currently there is no concept of package data 2024-07-09T19:01:58,660 directory, all directories are treated like packages. 2024-07-09T19:01:58,661 ******************************************************************************** 2024-07-09T19:01:58,662 !! 2024-07-09T19:01:58,662 check.warn(importable) 2024-07-09T19:01:58,663 /tmp/pip-build-env-abllg6kk/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.skewer' is absent from the `packages` configuration. 2024-07-09T19:01:58,664 !! 2024-07-09T19:01:58,664 ******************************************************************************** 2024-07-09T19:01:58,665 ############################ 2024-07-09T19:01:58,665 # Package would be ignored # 2024-07-09T19:01:58,665 ############################ 2024-07-09T19:01:58,666 Python recognizes 'multiqc.modules.skewer' as an importable package[^1], 2024-07-09T19:01:58,666 but it is absent from setuptools' `packages` configuration. 2024-07-09T19:01:58,667 This leads to an ambiguous overall configuration. If you want to distribute this 2024-07-09T19:01:58,667 package, please make sure that 'multiqc.modules.skewer' is explicitly added 2024-07-09T19:01:58,667 to the `packages` configuration field. 2024-07-09T19:01:58,668 Alternatively, you can also rely on setuptools' discovery methods 2024-07-09T19:01:58,669 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-07-09T19:01:58,669 instead of `find_packages(...)`/`find:`). 2024-07-09T19:01:58,670 You can read more about "package discovery" on setuptools documentation page: 2024-07-09T19:01:58,670 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-07-09T19:01:58,671 If you don't want 'multiqc.modules.skewer' to be distributed and are 2024-07-09T19:01:58,672 already explicitly excluding 'multiqc.modules.skewer' via 2024-07-09T19:01:58,672 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-07-09T19:01:58,672 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-07-09T19:01:58,673 combination with a more fine grained `package-data` configuration. 2024-07-09T19:01:58,674 You can read more about "package data files" on setuptools documentation page: 2024-07-09T19:01:58,675 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-07-09T19:01:58,677 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-07-09T19:01:58,678 even if it does not contain any `.py` files. 2024-07-09T19:01:58,678 On the other hand, currently there is no concept of package data 2024-07-09T19:01:58,679 directory, all directories are treated like packages. 2024-07-09T19:01:58,679 ******************************************************************************** 2024-07-09T19:01:58,680 !! 2024-07-09T19:01:58,681 check.warn(importable) 2024-07-09T19:01:58,681 /tmp/pip-build-env-abllg6kk/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.slamdunk' is absent from the `packages` configuration. 2024-07-09T19:01:58,682 !! 2024-07-09T19:01:58,683 ******************************************************************************** 2024-07-09T19:01:58,683 ############################ 2024-07-09T19:01:58,684 # Package would be ignored # 2024-07-09T19:01:58,684 ############################ 2024-07-09T19:01:58,684 Python recognizes 'multiqc.modules.slamdunk' as an importable package[^1], 2024-07-09T19:01:58,685 but it is absent from setuptools' `packages` configuration. 2024-07-09T19:01:58,686 This leads to an ambiguous overall configuration. If you want to distribute this 2024-07-09T19:01:58,687 package, please make sure that 'multiqc.modules.slamdunk' is explicitly added 2024-07-09T19:01:58,687 to the `packages` configuration field. 2024-07-09T19:01:58,688 Alternatively, you can also rely on setuptools' discovery methods 2024-07-09T19:01:58,689 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-07-09T19:01:58,689 instead of `find_packages(...)`/`find:`). 2024-07-09T19:01:58,690 You can read more about "package discovery" on setuptools documentation page: 2024-07-09T19:01:58,691 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-07-09T19:01:58,692 If you don't want 'multiqc.modules.slamdunk' to be distributed and are 2024-07-09T19:01:58,692 already explicitly excluding 'multiqc.modules.slamdunk' via 2024-07-09T19:01:58,692 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-07-09T19:01:58,693 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-07-09T19:01:58,693 combination with a more fine grained `package-data` configuration. 2024-07-09T19:01:58,694 You can read more about "package data files" on setuptools documentation page: 2024-07-09T19:01:58,694 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-07-09T19:01:58,696 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-07-09T19:01:58,696 even if it does not contain any `.py` files. 2024-07-09T19:01:58,696 On the other hand, currently there is no concept of package data 2024-07-09T19:01:58,697 directory, all directories are treated like packages. 2024-07-09T19:01:58,697 ******************************************************************************** 2024-07-09T19:01:58,698 !! 2024-07-09T19:01:58,699 check.warn(importable) 2024-07-09T19:01:58,699 /tmp/pip-build-env-abllg6kk/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.snippy' is absent from the `packages` configuration. 2024-07-09T19:01:58,700 !! 2024-07-09T19:01:58,700 ******************************************************************************** 2024-07-09T19:01:58,701 ############################ 2024-07-09T19:01:58,701 # Package would be ignored # 2024-07-09T19:01:58,702 ############################ 2024-07-09T19:01:58,703 Python recognizes 'multiqc.modules.snippy' as an importable package[^1], 2024-07-09T19:01:58,703 but it is absent from setuptools' `packages` configuration. 2024-07-09T19:01:58,704 This leads to an ambiguous overall configuration. If you want to distribute this 2024-07-09T19:01:58,705 package, please make sure that 'multiqc.modules.snippy' is explicitly added 2024-07-09T19:01:58,705 to the `packages` configuration field. 2024-07-09T19:01:58,706 Alternatively, you can also rely on setuptools' discovery methods 2024-07-09T19:01:58,707 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-07-09T19:01:58,708 instead of `find_packages(...)`/`find:`). 2024-07-09T19:01:58,708 You can read more about "package discovery" on setuptools documentation page: 2024-07-09T19:01:58,709 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-07-09T19:01:58,710 If you don't want 'multiqc.modules.snippy' to be distributed and are 2024-07-09T19:01:58,711 already explicitly excluding 'multiqc.modules.snippy' via 2024-07-09T19:01:58,711 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-07-09T19:01:58,712 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-07-09T19:01:58,712 combination with a more fine grained `package-data` configuration. 2024-07-09T19:01:58,713 You can read more about "package data files" on setuptools documentation page: 2024-07-09T19:01:58,714 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-07-09T19:01:58,716 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-07-09T19:01:58,717 even if it does not contain any `.py` files. 2024-07-09T19:01:58,718 On the other hand, currently there is no concept of package data 2024-07-09T19:01:58,718 directory, all directories are treated like packages. 2024-07-09T19:01:58,718 ******************************************************************************** 2024-07-09T19:01:58,719 !! 2024-07-09T19:01:58,719 check.warn(importable) 2024-07-09T19:01:58,719 /tmp/pip-build-env-abllg6kk/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.snpeff' is absent from the `packages` configuration. 2024-07-09T19:01:58,720 !! 2024-07-09T19:01:58,721 ******************************************************************************** 2024-07-09T19:01:58,721 ############################ 2024-07-09T19:01:58,721 # Package would be ignored # 2024-07-09T19:01:58,722 ############################ 2024-07-09T19:01:58,722 Python recognizes 'multiqc.modules.snpeff' as an importable package[^1], 2024-07-09T19:01:58,722 but it is absent from setuptools' `packages` configuration. 2024-07-09T19:01:58,723 This leads to an ambiguous overall configuration. If you want to distribute this 2024-07-09T19:01:58,723 package, please make sure that 'multiqc.modules.snpeff' is explicitly added 2024-07-09T19:01:58,723 to the `packages` configuration field. 2024-07-09T19:01:58,724 Alternatively, you can also rely on setuptools' discovery methods 2024-07-09T19:01:58,725 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-07-09T19:01:58,725 instead of `find_packages(...)`/`find:`). 2024-07-09T19:01:58,726 You can read more about "package discovery" on setuptools documentation page: 2024-07-09T19:01:58,727 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-07-09T19:01:58,728 If you don't want 'multiqc.modules.snpeff' to be distributed and are 2024-07-09T19:01:58,728 already explicitly excluding 'multiqc.modules.snpeff' via 2024-07-09T19:01:58,729 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-07-09T19:01:58,729 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-07-09T19:01:58,730 combination with a more fine grained `package-data` configuration. 2024-07-09T19:01:58,731 You can read more about "package data files" on setuptools documentation page: 2024-07-09T19:01:58,732 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-07-09T19:01:58,733 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-07-09T19:01:58,734 even if it does not contain any `.py` files. 2024-07-09T19:01:58,734 On the other hand, currently there is no concept of package data 2024-07-09T19:01:58,734 directory, all directories are treated like packages. 2024-07-09T19:01:58,735 ******************************************************************************** 2024-07-09T19:01:58,736 !! 2024-07-09T19:01:58,736 check.warn(importable) 2024-07-09T19:01:58,737 /tmp/pip-build-env-abllg6kk/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.snpsplit' is absent from the `packages` configuration. 2024-07-09T19:01:58,737 !! 2024-07-09T19:01:58,738 ******************************************************************************** 2024-07-09T19:01:58,738 ############################ 2024-07-09T19:01:58,739 # Package would be ignored # 2024-07-09T19:01:58,739 ############################ 2024-07-09T19:01:58,740 Python recognizes 'multiqc.modules.snpsplit' as an importable package[^1], 2024-07-09T19:01:58,741 but it is absent from setuptools' `packages` configuration. 2024-07-09T19:01:58,742 This leads to an ambiguous overall configuration. If you want to distribute this 2024-07-09T19:01:58,742 package, please make sure that 'multiqc.modules.snpsplit' is explicitly added 2024-07-09T19:01:58,742 to the `packages` configuration field. 2024-07-09T19:01:58,743 Alternatively, you can also rely on setuptools' discovery methods 2024-07-09T19:01:58,743 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-07-09T19:01:58,743 instead of `find_packages(...)`/`find:`). 2024-07-09T19:01:58,744 You can read more about "package discovery" on setuptools documentation page: 2024-07-09T19:01:58,745 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-07-09T19:01:58,745 If you don't want 'multiqc.modules.snpsplit' to be distributed and are 2024-07-09T19:01:58,746 already explicitly excluding 'multiqc.modules.snpsplit' via 2024-07-09T19:01:58,746 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-07-09T19:01:58,746 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-07-09T19:01:58,747 combination with a more fine grained `package-data` configuration. 2024-07-09T19:01:58,747 You can read more about "package data files" on setuptools documentation page: 2024-07-09T19:01:58,748 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-07-09T19:01:58,749 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-07-09T19:01:58,749 even if it does not contain any `.py` files. 2024-07-09T19:01:58,750 On the other hand, currently there is no concept of package data 2024-07-09T19:01:58,750 directory, all directories are treated like packages. 2024-07-09T19:01:58,751 ******************************************************************************** 2024-07-09T19:01:58,752 !! 2024-07-09T19:01:58,753 check.warn(importable) 2024-07-09T19:01:58,753 /tmp/pip-build-env-abllg6kk/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.somalier' is absent from the `packages` configuration. 2024-07-09T19:01:58,754 !! 2024-07-09T19:01:58,755 ******************************************************************************** 2024-07-09T19:01:58,755 ############################ 2024-07-09T19:01:58,755 # Package would be ignored # 2024-07-09T19:01:58,756 ############################ 2024-07-09T19:01:58,757 Python recognizes 'multiqc.modules.somalier' as an importable package[^1], 2024-07-09T19:01:58,757 but it is absent from setuptools' `packages` configuration. 2024-07-09T19:01:58,758 This leads to an ambiguous overall configuration. If you want to distribute this 2024-07-09T19:01:58,758 package, please make sure that 'multiqc.modules.somalier' is explicitly added 2024-07-09T19:01:58,759 to the `packages` configuration field. 2024-07-09T19:01:58,760 Alternatively, you can also rely on setuptools' discovery methods 2024-07-09T19:01:58,760 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-07-09T19:01:58,761 instead of `find_packages(...)`/`find:`). 2024-07-09T19:01:58,762 You can read more about "package discovery" on setuptools documentation page: 2024-07-09T19:01:58,762 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-07-09T19:01:58,763 If you don't want 'multiqc.modules.somalier' to be distributed and are 2024-07-09T19:01:58,764 already explicitly excluding 'multiqc.modules.somalier' via 2024-07-09T19:01:58,764 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-07-09T19:01:58,765 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-07-09T19:01:58,766 combination with a more fine grained `package-data` configuration. 2024-07-09T19:01:58,767 You can read more about "package data files" on setuptools documentation page: 2024-07-09T19:01:58,767 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-07-09T19:01:58,768 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-07-09T19:01:58,769 even if it does not contain any `.py` files. 2024-07-09T19:01:58,769 On the other hand, currently there is no concept of package data 2024-07-09T19:01:58,769 directory, all directories are treated like packages. 2024-07-09T19:01:58,770 ******************************************************************************** 2024-07-09T19:01:58,771 !! 2024-07-09T19:01:58,771 check.warn(importable) 2024-07-09T19:01:58,772 /tmp/pip-build-env-abllg6kk/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.sortmerna' is absent from the `packages` configuration. 2024-07-09T19:01:58,772 !! 2024-07-09T19:01:58,773 ******************************************************************************** 2024-07-09T19:01:58,773 ############################ 2024-07-09T19:01:58,774 # Package would be ignored # 2024-07-09T19:01:58,774 ############################ 2024-07-09T19:01:58,774 Python recognizes 'multiqc.modules.sortmerna' as an importable package[^1], 2024-07-09T19:01:58,775 but it is absent from setuptools' `packages` configuration. 2024-07-09T19:01:58,776 This leads to an ambiguous overall configuration. If you want to distribute this 2024-07-09T19:01:58,776 package, please make sure that 'multiqc.modules.sortmerna' is explicitly added 2024-07-09T19:01:58,777 to the `packages` configuration field. 2024-07-09T19:01:58,777 Alternatively, you can also rely on setuptools' discovery methods 2024-07-09T19:01:58,778 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-07-09T19:01:58,778 instead of `find_packages(...)`/`find:`). 2024-07-09T19:01:58,780 You can read more about "package discovery" on setuptools documentation page: 2024-07-09T19:01:58,781 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-07-09T19:01:58,782 If you don't want 'multiqc.modules.sortmerna' to be distributed and are 2024-07-09T19:01:58,782 already explicitly excluding 'multiqc.modules.sortmerna' via 2024-07-09T19:01:58,783 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-07-09T19:01:58,783 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-07-09T19:01:58,784 combination with a more fine grained `package-data` configuration. 2024-07-09T19:01:58,785 You can read more about "package data files" on setuptools documentation page: 2024-07-09T19:01:58,786 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-07-09T19:01:58,787 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-07-09T19:01:58,788 even if it does not contain any `.py` files. 2024-07-09T19:01:58,788 On the other hand, currently there is no concept of package data 2024-07-09T19:01:58,789 directory, all directories are treated like packages. 2024-07-09T19:01:58,789 ******************************************************************************** 2024-07-09T19:01:58,790 !! 2024-07-09T19:01:58,791 check.warn(importable) 2024-07-09T19:01:58,791 /tmp/pip-build-env-abllg6kk/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.sourmash' is absent from the `packages` configuration. 2024-07-09T19:01:58,792 !! 2024-07-09T19:01:58,793 ******************************************************************************** 2024-07-09T19:01:58,794 ############################ 2024-07-09T19:01:58,794 # Package would be ignored # 2024-07-09T19:01:58,795 ############################ 2024-07-09T19:01:58,795 Python recognizes 'multiqc.modules.sourmash' as an importable package[^1], 2024-07-09T19:01:58,795 but it is absent from setuptools' `packages` configuration. 2024-07-09T19:01:58,796 This leads to an ambiguous overall configuration. If you want to distribute this 2024-07-09T19:01:58,797 package, please make sure that 'multiqc.modules.sourmash' is explicitly added 2024-07-09T19:01:58,797 to the `packages` configuration field. 2024-07-09T19:01:58,797 Alternatively, you can also rely on setuptools' discovery methods 2024-07-09T19:01:58,798 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-07-09T19:01:58,798 instead of `find_packages(...)`/`find:`). 2024-07-09T19:01:58,799 You can read more about "package discovery" on setuptools documentation page: 2024-07-09T19:01:58,799 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-07-09T19:01:58,800 If you don't want 'multiqc.modules.sourmash' to be distributed and are 2024-07-09T19:01:58,800 already explicitly excluding 'multiqc.modules.sourmash' via 2024-07-09T19:01:58,801 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-07-09T19:01:58,801 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-07-09T19:01:58,802 combination with a more fine grained `package-data` configuration. 2024-07-09T19:01:58,803 You can read more about "package data files" on setuptools documentation page: 2024-07-09T19:01:58,804 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-07-09T19:01:58,805 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-07-09T19:01:58,806 even if it does not contain any `.py` files. 2024-07-09T19:01:58,806 On the other hand, currently there is no concept of package data 2024-07-09T19:01:58,807 directory, all directories are treated like packages. 2024-07-09T19:01:58,807 ******************************************************************************** 2024-07-09T19:01:58,809 !! 2024-07-09T19:01:58,809 check.warn(importable) 2024-07-09T19:01:58,810 /tmp/pip-build-env-abllg6kk/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.spaceranger' is absent from the `packages` configuration. 2024-07-09T19:01:58,810 !! 2024-07-09T19:01:58,811 ******************************************************************************** 2024-07-09T19:01:58,812 ############################ 2024-07-09T19:01:58,812 # Package would be ignored # 2024-07-09T19:01:58,813 ############################ 2024-07-09T19:01:58,813 Python recognizes 'multiqc.modules.spaceranger' as an importable package[^1], 2024-07-09T19:01:58,813 but it is absent from setuptools' `packages` configuration. 2024-07-09T19:01:58,814 This leads to an ambiguous overall configuration. If you want to distribute this 2024-07-09T19:01:58,815 package, please make sure that 'multiqc.modules.spaceranger' is explicitly added 2024-07-09T19:01:58,815 to the `packages` configuration field. 2024-07-09T19:01:58,816 Alternatively, you can also rely on setuptools' discovery methods 2024-07-09T19:01:58,817 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-07-09T19:01:58,817 instead of `find_packages(...)`/`find:`). 2024-07-09T19:01:58,818 You can read more about "package discovery" on setuptools documentation page: 2024-07-09T19:01:58,819 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-07-09T19:01:58,820 If you don't want 'multiqc.modules.spaceranger' to be distributed and are 2024-07-09T19:01:58,821 already explicitly excluding 'multiqc.modules.spaceranger' via 2024-07-09T19:01:58,821 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-07-09T19:01:58,821 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-07-09T19:01:58,822 combination with a more fine grained `package-data` configuration. 2024-07-09T19:01:58,822 You can read more about "package data files" on setuptools documentation page: 2024-07-09T19:01:58,823 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-07-09T19:01:58,824 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-07-09T19:01:58,825 even if it does not contain any `.py` files. 2024-07-09T19:01:58,825 On the other hand, currently there is no concept of package data 2024-07-09T19:01:58,825 directory, all directories are treated like packages. 2024-07-09T19:01:58,826 ******************************************************************************** 2024-07-09T19:01:58,826 !! 2024-07-09T19:01:58,827 check.warn(importable) 2024-07-09T19:01:58,827 /tmp/pip-build-env-abllg6kk/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.stacks' is absent from the `packages` configuration. 2024-07-09T19:01:58,827 !! 2024-07-09T19:01:58,828 ******************************************************************************** 2024-07-09T19:01:58,829 ############################ 2024-07-09T19:01:58,829 # Package would be ignored # 2024-07-09T19:01:58,830 ############################ 2024-07-09T19:01:58,830 Python recognizes 'multiqc.modules.stacks' as an importable package[^1], 2024-07-09T19:01:58,831 but it is absent from setuptools' `packages` configuration. 2024-07-09T19:01:58,832 This leads to an ambiguous overall configuration. If you want to distribute this 2024-07-09T19:01:58,833 package, please make sure that 'multiqc.modules.stacks' is explicitly added 2024-07-09T19:01:58,833 to the `packages` configuration field. 2024-07-09T19:01:58,834 Alternatively, you can also rely on setuptools' discovery methods 2024-07-09T19:01:58,835 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-07-09T19:01:58,835 instead of `find_packages(...)`/`find:`). 2024-07-09T19:01:58,836 You can read more about "package discovery" on setuptools documentation page: 2024-07-09T19:01:58,837 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-07-09T19:01:58,838 If you don't want 'multiqc.modules.stacks' to be distributed and are 2024-07-09T19:01:58,838 already explicitly excluding 'multiqc.modules.stacks' via 2024-07-09T19:01:58,839 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-07-09T19:01:58,839 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-07-09T19:01:58,840 combination with a more fine grained `package-data` configuration. 2024-07-09T19:01:58,841 You can read more about "package data files" on setuptools documentation page: 2024-07-09T19:01:58,842 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-07-09T19:01:58,844 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-07-09T19:01:58,844 even if it does not contain any `.py` files. 2024-07-09T19:01:58,845 On the other hand, currently there is no concept of package data 2024-07-09T19:01:58,845 directory, all directories are treated like packages. 2024-07-09T19:01:58,846 ******************************************************************************** 2024-07-09T19:01:58,847 !! 2024-07-09T19:01:58,847 check.warn(importable) 2024-07-09T19:01:58,848 /tmp/pip-build-env-abllg6kk/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.star' is absent from the `packages` configuration. 2024-07-09T19:01:58,848 !! 2024-07-09T19:01:58,849 ******************************************************************************** 2024-07-09T19:01:58,849 ############################ 2024-07-09T19:01:58,850 # Package would be ignored # 2024-07-09T19:01:58,850 ############################ 2024-07-09T19:01:58,850 Python recognizes 'multiqc.modules.star' as an importable package[^1], 2024-07-09T19:01:58,851 but it is absent from setuptools' `packages` configuration. 2024-07-09T19:01:58,851 This leads to an ambiguous overall configuration. If you want to distribute this 2024-07-09T19:01:58,852 package, please make sure that 'multiqc.modules.star' is explicitly added 2024-07-09T19:01:58,852 to the `packages` configuration field. 2024-07-09T19:01:58,853 Alternatively, you can also rely on setuptools' discovery methods 2024-07-09T19:01:58,853 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-07-09T19:01:58,854 instead of `find_packages(...)`/`find:`). 2024-07-09T19:01:58,854 You can read more about "package discovery" on setuptools documentation page: 2024-07-09T19:01:58,855 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-07-09T19:01:58,856 If you don't want 'multiqc.modules.star' to be distributed and are 2024-07-09T19:01:58,857 already explicitly excluding 'multiqc.modules.star' via 2024-07-09T19:01:58,858 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-07-09T19:01:58,858 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-07-09T19:01:58,859 combination with a more fine grained `package-data` configuration. 2024-07-09T19:01:58,860 You can read more about "package data files" on setuptools documentation page: 2024-07-09T19:01:58,861 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-07-09T19:01:58,862 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-07-09T19:01:58,863 even if it does not contain any `.py` files. 2024-07-09T19:01:58,864 On the other hand, currently there is no concept of package data 2024-07-09T19:01:58,864 directory, all directories are treated like packages. 2024-07-09T19:01:58,865 ******************************************************************************** 2024-07-09T19:01:58,866 !! 2024-07-09T19:01:58,866 check.warn(importable) 2024-07-09T19:01:58,867 /tmp/pip-build-env-abllg6kk/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.supernova' is absent from the `packages` configuration. 2024-07-09T19:01:58,867 !! 2024-07-09T19:01:58,868 ******************************************************************************** 2024-07-09T19:01:58,869 ############################ 2024-07-09T19:01:58,869 # Package would be ignored # 2024-07-09T19:01:58,869 ############################ 2024-07-09T19:01:58,870 Python recognizes 'multiqc.modules.supernova' as an importable package[^1], 2024-07-09T19:01:58,870 but it is absent from setuptools' `packages` configuration. 2024-07-09T19:01:58,871 This leads to an ambiguous overall configuration. If you want to distribute this 2024-07-09T19:01:58,872 package, please make sure that 'multiqc.modules.supernova' is explicitly added 2024-07-09T19:01:58,873 to the `packages` configuration field. 2024-07-09T19:01:58,874 Alternatively, you can also rely on setuptools' discovery methods 2024-07-09T19:01:58,874 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-07-09T19:01:58,874 instead of `find_packages(...)`/`find:`). 2024-07-09T19:01:58,875 You can read more about "package discovery" on setuptools documentation page: 2024-07-09T19:01:58,876 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-07-09T19:01:58,876 If you don't want 'multiqc.modules.supernova' to be distributed and are 2024-07-09T19:01:58,877 already explicitly excluding 'multiqc.modules.supernova' via 2024-07-09T19:01:58,877 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-07-09T19:01:58,877 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-07-09T19:01:58,878 combination with a more fine grained `package-data` configuration. 2024-07-09T19:01:58,878 You can read more about "package data files" on setuptools documentation page: 2024-07-09T19:01:58,879 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-07-09T19:01:58,880 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-07-09T19:01:58,880 even if it does not contain any `.py` files. 2024-07-09T19:01:58,881 On the other hand, currently there is no concept of package data 2024-07-09T19:01:58,881 directory, all directories are treated like packages. 2024-07-09T19:01:58,882 ******************************************************************************** 2024-07-09T19:01:58,883 !! 2024-07-09T19:01:58,883 check.warn(importable) 2024-07-09T19:01:58,884 /tmp/pip-build-env-abllg6kk/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.theta2' is absent from the `packages` configuration. 2024-07-09T19:01:58,884 !! 2024-07-09T19:01:58,885 ******************************************************************************** 2024-07-09T19:01:58,886 ############################ 2024-07-09T19:01:58,886 # Package would be ignored # 2024-07-09T19:01:58,887 ############################ 2024-07-09T19:01:58,887 Python recognizes 'multiqc.modules.theta2' as an importable package[^1], 2024-07-09T19:01:58,888 but it is absent from setuptools' `packages` configuration. 2024-07-09T19:01:58,889 This leads to an ambiguous overall configuration. If you want to distribute this 2024-07-09T19:01:58,890 package, please make sure that 'multiqc.modules.theta2' is explicitly added 2024-07-09T19:01:58,890 to the `packages` configuration field. 2024-07-09T19:01:58,891 Alternatively, you can also rely on setuptools' discovery methods 2024-07-09T19:01:58,891 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-07-09T19:01:58,892 instead of `find_packages(...)`/`find:`). 2024-07-09T19:01:58,893 You can read more about "package discovery" on setuptools documentation page: 2024-07-09T19:01:58,894 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-07-09T19:01:58,895 If you don't want 'multiqc.modules.theta2' to be distributed and are 2024-07-09T19:01:58,895 already explicitly excluding 'multiqc.modules.theta2' via 2024-07-09T19:01:58,896 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-07-09T19:01:58,896 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-07-09T19:01:58,897 combination with a more fine grained `package-data` configuration. 2024-07-09T19:01:58,897 You can read more about "package data files" on setuptools documentation page: 2024-07-09T19:01:58,898 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-07-09T19:01:58,900 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-07-09T19:01:58,900 even if it does not contain any `.py` files. 2024-07-09T19:01:58,901 On the other hand, currently there is no concept of package data 2024-07-09T19:01:58,901 directory, all directories are treated like packages. 2024-07-09T19:01:58,901 ******************************************************************************** 2024-07-09T19:01:58,902 !! 2024-07-09T19:01:58,902 check.warn(importable) 2024-07-09T19:01:58,903 /tmp/pip-build-env-abllg6kk/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.tophat' is absent from the `packages` configuration. 2024-07-09T19:01:58,903 !! 2024-07-09T19:01:58,904 ******************************************************************************** 2024-07-09T19:01:58,904 ############################ 2024-07-09T19:01:58,904 # Package would be ignored # 2024-07-09T19:01:58,905 ############################ 2024-07-09T19:01:58,905 Python recognizes 'multiqc.modules.tophat' as an importable package[^1], 2024-07-09T19:01:58,906 but it is absent from setuptools' `packages` configuration. 2024-07-09T19:01:58,906 This leads to an ambiguous overall configuration. If you want to distribute this 2024-07-09T19:01:58,907 package, please make sure that 'multiqc.modules.tophat' is explicitly added 2024-07-09T19:01:58,907 to the `packages` configuration field. 2024-07-09T19:01:58,908 Alternatively, you can also rely on setuptools' discovery methods 2024-07-09T19:01:58,908 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-07-09T19:01:58,909 instead of `find_packages(...)`/`find:`). 2024-07-09T19:01:58,910 You can read more about "package discovery" on setuptools documentation page: 2024-07-09T19:01:58,911 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-07-09T19:01:58,912 If you don't want 'multiqc.modules.tophat' to be distributed and are 2024-07-09T19:01:58,912 already explicitly excluding 'multiqc.modules.tophat' via 2024-07-09T19:01:58,913 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-07-09T19:01:58,913 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-07-09T19:01:58,914 combination with a more fine grained `package-data` configuration. 2024-07-09T19:01:58,915 You can read more about "package data files" on setuptools documentation page: 2024-07-09T19:01:58,917 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-07-09T19:01:58,918 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-07-09T19:01:58,919 even if it does not contain any `.py` files. 2024-07-09T19:01:58,919 On the other hand, currently there is no concept of package data 2024-07-09T19:01:58,920 directory, all directories are treated like packages. 2024-07-09T19:01:58,920 ******************************************************************************** 2024-07-09T19:01:58,921 !! 2024-07-09T19:01:58,921 check.warn(importable) 2024-07-09T19:01:58,922 /tmp/pip-build-env-abllg6kk/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.trimmomatic' is absent from the `packages` configuration. 2024-07-09T19:01:58,922 !! 2024-07-09T19:01:58,923 ******************************************************************************** 2024-07-09T19:01:58,924 ############################ 2024-07-09T19:01:58,925 # Package would be ignored # 2024-07-09T19:01:58,925 ############################ 2024-07-09T19:01:58,926 Python recognizes 'multiqc.modules.trimmomatic' as an importable package[^1], 2024-07-09T19:01:58,926 but it is absent from setuptools' `packages` configuration. 2024-07-09T19:01:58,927 This leads to an ambiguous overall configuration. If you want to distribute this 2024-07-09T19:01:58,928 package, please make sure that 'multiqc.modules.trimmomatic' is explicitly added 2024-07-09T19:01:58,928 to the `packages` configuration field. 2024-07-09T19:01:58,929 Alternatively, you can also rely on setuptools' discovery methods 2024-07-09T19:01:58,929 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-07-09T19:01:58,929 instead of `find_packages(...)`/`find:`). 2024-07-09T19:01:58,930 You can read more about "package discovery" on setuptools documentation page: 2024-07-09T19:01:58,930 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-07-09T19:01:58,931 If you don't want 'multiqc.modules.trimmomatic' to be distributed and are 2024-07-09T19:01:58,931 already explicitly excluding 'multiqc.modules.trimmomatic' via 2024-07-09T19:01:58,932 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-07-09T19:01:58,932 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-07-09T19:01:58,933 combination with a more fine grained `package-data` configuration. 2024-07-09T19:01:58,933 You can read more about "package data files" on setuptools documentation page: 2024-07-09T19:01:58,934 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-07-09T19:01:58,935 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-07-09T19:01:58,936 even if it does not contain any `.py` files. 2024-07-09T19:01:58,937 On the other hand, currently there is no concept of package data 2024-07-09T19:01:58,937 directory, all directories are treated like packages. 2024-07-09T19:01:58,938 ******************************************************************************** 2024-07-09T19:01:58,939 !! 2024-07-09T19:01:58,939 check.warn(importable) 2024-07-09T19:01:58,940 /tmp/pip-build-env-abllg6kk/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.truvari' is absent from the `packages` configuration. 2024-07-09T19:01:58,940 !! 2024-07-09T19:01:58,941 ******************************************************************************** 2024-07-09T19:01:58,941 ############################ 2024-07-09T19:01:58,942 # Package would be ignored # 2024-07-09T19:01:58,943 ############################ 2024-07-09T19:01:58,943 Python recognizes 'multiqc.modules.truvari' as an importable package[^1], 2024-07-09T19:01:58,943 but it is absent from setuptools' `packages` configuration. 2024-07-09T19:01:58,945 This leads to an ambiguous overall configuration. If you want to distribute this 2024-07-09T19:01:58,945 package, please make sure that 'multiqc.modules.truvari' is explicitly added 2024-07-09T19:01:58,945 to the `packages` configuration field. 2024-07-09T19:01:58,946 Alternatively, you can also rely on setuptools' discovery methods 2024-07-09T19:01:58,947 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-07-09T19:01:58,947 instead of `find_packages(...)`/`find:`). 2024-07-09T19:01:58,948 You can read more about "package discovery" on setuptools documentation page: 2024-07-09T19:01:58,949 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-07-09T19:01:58,950 If you don't want 'multiqc.modules.truvari' to be distributed and are 2024-07-09T19:01:58,951 already explicitly excluding 'multiqc.modules.truvari' via 2024-07-09T19:01:58,951 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-07-09T19:01:58,952 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-07-09T19:01:58,952 combination with a more fine grained `package-data` configuration. 2024-07-09T19:01:58,953 You can read more about "package data files" on setuptools documentation page: 2024-07-09T19:01:58,953 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-07-09T19:01:58,955 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-07-09T19:01:58,955 even if it does not contain any `.py` files. 2024-07-09T19:01:58,955 On the other hand, currently there is no concept of package data 2024-07-09T19:01:58,956 directory, all directories are treated like packages. 2024-07-09T19:01:58,956 ******************************************************************************** 2024-07-09T19:01:58,957 !! 2024-07-09T19:01:58,957 check.warn(importable) 2024-07-09T19:01:58,958 /tmp/pip-build-env-abllg6kk/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.umitools' is absent from the `packages` configuration. 2024-07-09T19:01:58,958 !! 2024-07-09T19:01:58,959 ******************************************************************************** 2024-07-09T19:01:58,959 ############################ 2024-07-09T19:01:58,959 # Package would be ignored # 2024-07-09T19:01:58,960 ############################ 2024-07-09T19:01:58,960 Python recognizes 'multiqc.modules.umitools' as an importable package[^1], 2024-07-09T19:01:58,960 but it is absent from setuptools' `packages` configuration. 2024-07-09T19:01:58,961 This leads to an ambiguous overall configuration. If you want to distribute this 2024-07-09T19:01:58,962 package, please make sure that 'multiqc.modules.umitools' is explicitly added 2024-07-09T19:01:58,963 to the `packages` configuration field. 2024-07-09T19:01:58,964 Alternatively, you can also rely on setuptools' discovery methods 2024-07-09T19:01:58,964 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-07-09T19:01:58,965 instead of `find_packages(...)`/`find:`). 2024-07-09T19:01:58,966 You can read more about "package discovery" on setuptools documentation page: 2024-07-09T19:01:58,967 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-07-09T19:01:58,968 If you don't want 'multiqc.modules.umitools' to be distributed and are 2024-07-09T19:01:58,969 already explicitly excluding 'multiqc.modules.umitools' via 2024-07-09T19:01:58,969 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-07-09T19:01:58,970 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-07-09T19:01:58,970 combination with a more fine grained `package-data` configuration. 2024-07-09T19:01:58,971 You can read more about "package data files" on setuptools documentation page: 2024-07-09T19:01:58,972 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-07-09T19:01:58,973 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-07-09T19:01:58,974 even if it does not contain any `.py` files. 2024-07-09T19:01:58,974 On the other hand, currently there is no concept of package data 2024-07-09T19:01:58,975 directory, all directories are treated like packages. 2024-07-09T19:01:58,975 ******************************************************************************** 2024-07-09T19:01:58,976 !! 2024-07-09T19:01:58,977 check.warn(importable) 2024-07-09T19:01:58,977 /tmp/pip-build-env-abllg6kk/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.varscan2' is absent from the `packages` configuration. 2024-07-09T19:01:58,978 !! 2024-07-09T19:01:58,979 ******************************************************************************** 2024-07-09T19:01:58,979 ############################ 2024-07-09T19:01:58,980 # Package would be ignored # 2024-07-09T19:01:58,980 ############################ 2024-07-09T19:01:58,981 Python recognizes 'multiqc.modules.varscan2' as an importable package[^1], 2024-07-09T19:01:58,981 but it is absent from setuptools' `packages` configuration. 2024-07-09T19:01:58,982 This leads to an ambiguous overall configuration. If you want to distribute this 2024-07-09T19:01:58,982 package, please make sure that 'multiqc.modules.varscan2' is explicitly added 2024-07-09T19:01:58,982 to the `packages` configuration field. 2024-07-09T19:01:58,983 Alternatively, you can also rely on setuptools' discovery methods 2024-07-09T19:01:58,983 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-07-09T19:01:58,984 instead of `find_packages(...)`/`find:`). 2024-07-09T19:01:58,985 You can read more about "package discovery" on setuptools documentation page: 2024-07-09T19:01:58,985 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-07-09T19:01:58,986 If you don't want 'multiqc.modules.varscan2' to be distributed and are 2024-07-09T19:01:58,987 already explicitly excluding 'multiqc.modules.varscan2' via 2024-07-09T19:01:58,987 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-07-09T19:01:58,988 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-07-09T19:01:58,988 combination with a more fine grained `package-data` configuration. 2024-07-09T19:01:58,990 You can read more about "package data files" on setuptools documentation page: 2024-07-09T19:01:58,991 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-07-09T19:01:58,992 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-07-09T19:01:58,993 even if it does not contain any `.py` files. 2024-07-09T19:01:58,993 On the other hand, currently there is no concept of package data 2024-07-09T19:01:58,994 directory, all directories are treated like packages. 2024-07-09T19:01:58,994 ******************************************************************************** 2024-07-09T19:01:58,995 !! 2024-07-09T19:01:58,996 check.warn(importable) 2024-07-09T19:01:58,996 /tmp/pip-build-env-abllg6kk/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.vcftools' is absent from the `packages` configuration. 2024-07-09T19:01:58,997 !! 2024-07-09T19:01:58,998 ******************************************************************************** 2024-07-09T19:01:58,999 ############################ 2024-07-09T19:01:58,999 # Package would be ignored # 2024-07-09T19:01:59,000 ############################ 2024-07-09T19:01:59,000 Python recognizes 'multiqc.modules.vcftools' as an importable package[^1], 2024-07-09T19:01:59,001 but it is absent from setuptools' `packages` configuration. 2024-07-09T19:01:59,002 This leads to an ambiguous overall configuration. If you want to distribute this 2024-07-09T19:01:59,002 package, please make sure that 'multiqc.modules.vcftools' is explicitly added 2024-07-09T19:01:59,003 to the `packages` configuration field. 2024-07-09T19:01:59,004 Alternatively, you can also rely on setuptools' discovery methods 2024-07-09T19:01:59,005 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-07-09T19:01:59,005 instead of `find_packages(...)`/`find:`). 2024-07-09T19:01:59,007 You can read more about "package discovery" on setuptools documentation page: 2024-07-09T19:01:59,007 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-07-09T19:01:59,008 If you don't want 'multiqc.modules.vcftools' to be distributed and are 2024-07-09T19:01:59,009 already explicitly excluding 'multiqc.modules.vcftools' via 2024-07-09T19:01:59,009 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-07-09T19:01:59,009 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-07-09T19:01:59,010 combination with a more fine grained `package-data` configuration. 2024-07-09T19:01:59,010 You can read more about "package data files" on setuptools documentation page: 2024-07-09T19:01:59,011 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-07-09T19:01:59,012 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-07-09T19:01:59,012 even if it does not contain any `.py` files. 2024-07-09T19:01:59,013 On the other hand, currently there is no concept of package data 2024-07-09T19:01:59,013 directory, all directories are treated like packages. 2024-07-09T19:01:59,014 ******************************************************************************** 2024-07-09T19:01:59,014 !! 2024-07-09T19:01:59,015 check.warn(importable) 2024-07-09T19:01:59,015 /tmp/pip-build-env-abllg6kk/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.vep' is absent from the `packages` configuration. 2024-07-09T19:01:59,015 !! 2024-07-09T19:01:59,017 ******************************************************************************** 2024-07-09T19:01:59,017 ############################ 2024-07-09T19:01:59,018 # Package would be ignored # 2024-07-09T19:01:59,018 ############################ 2024-07-09T19:01:59,019 Python recognizes 'multiqc.modules.vep' as an importable package[^1], 2024-07-09T19:01:59,019 but it is absent from setuptools' `packages` configuration. 2024-07-09T19:01:59,020 This leads to an ambiguous overall configuration. If you want to distribute this 2024-07-09T19:01:59,021 package, please make sure that 'multiqc.modules.vep' is explicitly added 2024-07-09T19:01:59,021 to the `packages` configuration field. 2024-07-09T19:01:59,022 Alternatively, you can also rely on setuptools' discovery methods 2024-07-09T19:01:59,023 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-07-09T19:01:59,024 instead of `find_packages(...)`/`find:`). 2024-07-09T19:01:59,025 You can read more about "package discovery" on setuptools documentation page: 2024-07-09T19:01:59,026 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-07-09T19:01:59,026 If you don't want 'multiqc.modules.vep' to be distributed and are 2024-07-09T19:01:59,027 already explicitly excluding 'multiqc.modules.vep' via 2024-07-09T19:01:59,027 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-07-09T19:01:59,028 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-07-09T19:01:59,028 combination with a more fine grained `package-data` configuration. 2024-07-09T19:01:59,029 You can read more about "package data files" on setuptools documentation page: 2024-07-09T19:01:59,030 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-07-09T19:01:59,032 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-07-09T19:01:59,033 even if it does not contain any `.py` files. 2024-07-09T19:01:59,033 On the other hand, currently there is no concept of package data 2024-07-09T19:01:59,034 directory, all directories are treated like packages. 2024-07-09T19:01:59,035 ******************************************************************************** 2024-07-09T19:01:59,035 !! 2024-07-09T19:01:59,036 check.warn(importable) 2024-07-09T19:01:59,036 /tmp/pip-build-env-abllg6kk/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.verifybamid' is absent from the `packages` configuration. 2024-07-09T19:01:59,036 !! 2024-07-09T19:01:59,037 ******************************************************************************** 2024-07-09T19:01:59,038 ############################ 2024-07-09T19:01:59,038 # Package would be ignored # 2024-07-09T19:01:59,038 ############################ 2024-07-09T19:01:59,039 Python recognizes 'multiqc.modules.verifybamid' as an importable package[^1], 2024-07-09T19:01:59,039 but it is absent from setuptools' `packages` configuration. 2024-07-09T19:01:59,040 This leads to an ambiguous overall configuration. If you want to distribute this 2024-07-09T19:01:59,041 package, please make sure that 'multiqc.modules.verifybamid' is explicitly added 2024-07-09T19:01:59,041 to the `packages` configuration field. 2024-07-09T19:01:59,042 Alternatively, you can also rely on setuptools' discovery methods 2024-07-09T19:01:59,043 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-07-09T19:01:59,043 instead of `find_packages(...)`/`find:`). 2024-07-09T19:01:59,045 You can read more about "package discovery" on setuptools documentation page: 2024-07-09T19:01:59,046 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-07-09T19:01:59,047 If you don't want 'multiqc.modules.verifybamid' to be distributed and are 2024-07-09T19:01:59,048 already explicitly excluding 'multiqc.modules.verifybamid' via 2024-07-09T19:01:59,049 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-07-09T19:01:59,049 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-07-09T19:01:59,050 combination with a more fine grained `package-data` configuration. 2024-07-09T19:01:59,051 You can read more about "package data files" on setuptools documentation page: 2024-07-09T19:01:59,053 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-07-09T19:01:59,054 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-07-09T19:01:59,055 even if it does not contain any `.py` files. 2024-07-09T19:01:59,056 On the other hand, currently there is no concept of package data 2024-07-09T19:01:59,056 directory, all directories are treated like packages. 2024-07-09T19:01:59,057 ******************************************************************************** 2024-07-09T19:01:59,058 !! 2024-07-09T19:01:59,058 check.warn(importable) 2024-07-09T19:01:59,059 /tmp/pip-build-env-abllg6kk/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.whatshap' is absent from the `packages` configuration. 2024-07-09T19:01:59,060 !! 2024-07-09T19:01:59,061 ******************************************************************************** 2024-07-09T19:01:59,061 ############################ 2024-07-09T19:01:59,062 # Package would be ignored # 2024-07-09T19:01:59,062 ############################ 2024-07-09T19:01:59,063 Python recognizes 'multiqc.modules.whatshap' as an importable package[^1], 2024-07-09T19:01:59,064 but it is absent from setuptools' `packages` configuration. 2024-07-09T19:01:59,065 This leads to an ambiguous overall configuration. If you want to distribute this 2024-07-09T19:01:59,066 package, please make sure that 'multiqc.modules.whatshap' is explicitly added 2024-07-09T19:01:59,067 to the `packages` configuration field. 2024-07-09T19:01:59,068 Alternatively, you can also rely on setuptools' discovery methods 2024-07-09T19:01:59,068 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-07-09T19:01:59,069 instead of `find_packages(...)`/`find:`). 2024-07-09T19:01:59,070 You can read more about "package discovery" on setuptools documentation page: 2024-07-09T19:01:59,071 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-07-09T19:01:59,072 If you don't want 'multiqc.modules.whatshap' to be distributed and are 2024-07-09T19:01:59,072 already explicitly excluding 'multiqc.modules.whatshap' via 2024-07-09T19:01:59,073 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-07-09T19:01:59,073 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-07-09T19:01:59,074 combination with a more fine grained `package-data` configuration. 2024-07-09T19:01:59,075 You can read more about "package data files" on setuptools documentation page: 2024-07-09T19:01:59,076 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-07-09T19:01:59,078 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-07-09T19:01:59,079 even if it does not contain any `.py` files. 2024-07-09T19:01:59,079 On the other hand, currently there is no concept of package data 2024-07-09T19:01:59,080 directory, all directories are treated like packages. 2024-07-09T19:01:59,081 ******************************************************************************** 2024-07-09T19:01:59,082 !! 2024-07-09T19:01:59,083 check.warn(importable) 2024-07-09T19:01:59,083 /tmp/pip-build-env-abllg6kk/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.xengsort' is absent from the `packages` configuration. 2024-07-09T19:01:59,084 !! 2024-07-09T19:01:59,085 ******************************************************************************** 2024-07-09T19:01:59,086 ############################ 2024-07-09T19:01:59,087 # Package would be ignored # 2024-07-09T19:01:59,088 ############################ 2024-07-09T19:01:59,088 Python recognizes 'multiqc.modules.xengsort' as an importable package[^1], 2024-07-09T19:01:59,089 but it is absent from setuptools' `packages` configuration. 2024-07-09T19:01:59,091 This leads to an ambiguous overall configuration. If you want to distribute this 2024-07-09T19:01:59,092 package, please make sure that 'multiqc.modules.xengsort' is explicitly added 2024-07-09T19:01:59,092 to the `packages` configuration field. 2024-07-09T19:01:59,093 Alternatively, you can also rely on setuptools' discovery methods 2024-07-09T19:01:59,094 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-07-09T19:01:59,095 instead of `find_packages(...)`/`find:`). 2024-07-09T19:01:59,096 You can read more about "package discovery" on setuptools documentation page: 2024-07-09T19:01:59,097 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-07-09T19:01:59,098 If you don't want 'multiqc.modules.xengsort' to be distributed and are 2024-07-09T19:01:59,099 already explicitly excluding 'multiqc.modules.xengsort' via 2024-07-09T19:01:59,100 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-07-09T19:01:59,101 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-07-09T19:01:59,101 combination with a more fine grained `package-data` configuration. 2024-07-09T19:01:59,103 You can read more about "package data files" on setuptools documentation page: 2024-07-09T19:01:59,104 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-07-09T19:01:59,106 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-07-09T19:01:59,106 even if it does not contain any `.py` files. 2024-07-09T19:01:59,107 On the other hand, currently there is no concept of package data 2024-07-09T19:01:59,107 directory, all directories are treated like packages. 2024-07-09T19:01:59,108 ******************************************************************************** 2024-07-09T19:01:59,109 !! 2024-07-09T19:01:59,109 check.warn(importable) 2024-07-09T19:01:59,110 /tmp/pip-build-env-abllg6kk/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.xenome' is absent from the `packages` configuration. 2024-07-09T19:01:59,110 !! 2024-07-09T19:01:59,111 ******************************************************************************** 2024-07-09T19:01:59,112 ############################ 2024-07-09T19:01:59,112 # Package would be ignored # 2024-07-09T19:01:59,113 ############################ 2024-07-09T19:01:59,113 Python recognizes 'multiqc.modules.xenome' as an importable package[^1], 2024-07-09T19:01:59,114 but it is absent from setuptools' `packages` configuration. 2024-07-09T19:01:59,115 This leads to an ambiguous overall configuration. If you want to distribute this 2024-07-09T19:01:59,115 package, please make sure that 'multiqc.modules.xenome' is explicitly added 2024-07-09T19:01:59,116 to the `packages` configuration field. 2024-07-09T19:01:59,117 Alternatively, you can also rely on setuptools' discovery methods 2024-07-09T19:01:59,118 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-07-09T19:01:59,118 instead of `find_packages(...)`/`find:`). 2024-07-09T19:01:59,120 You can read more about "package discovery" on setuptools documentation page: 2024-07-09T19:01:59,121 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-07-09T19:01:59,122 If you don't want 'multiqc.modules.xenome' to be distributed and are 2024-07-09T19:01:59,123 already explicitly excluding 'multiqc.modules.xenome' via 2024-07-09T19:01:59,124 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-07-09T19:01:59,124 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-07-09T19:01:59,125 combination with a more fine grained `package-data` configuration. 2024-07-09T19:01:59,126 You can read more about "package data files" on setuptools documentation page: 2024-07-09T19:01:59,127 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-07-09T19:01:59,129 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-07-09T19:01:59,130 even if it does not contain any `.py` files. 2024-07-09T19:01:59,130 On the other hand, currently there is no concept of package data 2024-07-09T19:01:59,131 directory, all directories are treated like packages. 2024-07-09T19:01:59,132 ******************************************************************************** 2024-07-09T19:01:59,133 !! 2024-07-09T19:01:59,133 check.warn(importable) 2024-07-09T19:01:59,134 /tmp/pip-build-env-abllg6kk/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.plots' is absent from the `packages` configuration. 2024-07-09T19:01:59,134 !! 2024-07-09T19:01:59,136 ******************************************************************************** 2024-07-09T19:01:59,136 ############################ 2024-07-09T19:01:59,137 # Package would be ignored # 2024-07-09T19:01:59,138 ############################ 2024-07-09T19:01:59,138 Python recognizes 'multiqc.plots' as an importable package[^1], 2024-07-09T19:01:59,139 but it is absent from setuptools' `packages` configuration. 2024-07-09T19:01:59,140 This leads to an ambiguous overall configuration. If you want to distribute this 2024-07-09T19:01:59,140 package, please make sure that 'multiqc.plots' is explicitly added 2024-07-09T19:01:59,141 to the `packages` configuration field. 2024-07-09T19:01:59,141 Alternatively, you can also rely on setuptools' discovery methods 2024-07-09T19:01:59,142 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-07-09T19:01:59,142 instead of `find_packages(...)`/`find:`). 2024-07-09T19:01:59,143 You can read more about "package discovery" on setuptools documentation page: 2024-07-09T19:01:59,144 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-07-09T19:01:59,145 If you don't want 'multiqc.plots' to be distributed and are 2024-07-09T19:01:59,145 already explicitly excluding 'multiqc.plots' via 2024-07-09T19:01:59,146 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-07-09T19:01:59,146 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-07-09T19:01:59,147 combination with a more fine grained `package-data` configuration. 2024-07-09T19:01:59,148 You can read more about "package data files" on setuptools documentation page: 2024-07-09T19:01:59,149 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-07-09T19:01:59,150 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-07-09T19:01:59,150 even if it does not contain any `.py` files. 2024-07-09T19:01:59,151 On the other hand, currently there is no concept of package data 2024-07-09T19:01:59,151 directory, all directories are treated like packages. 2024-07-09T19:01:59,152 ******************************************************************************** 2024-07-09T19:01:59,153 !! 2024-07-09T19:01:59,153 check.warn(importable) 2024-07-09T19:01:59,154 /tmp/pip-build-env-abllg6kk/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.plots.plotly' is absent from the `packages` configuration. 2024-07-09T19:01:59,154 !! 2024-07-09T19:01:59,156 ******************************************************************************** 2024-07-09T19:01:59,156 ############################ 2024-07-09T19:01:59,157 # Package would be ignored # 2024-07-09T19:01:59,157 ############################ 2024-07-09T19:01:59,158 Python recognizes 'multiqc.plots.plotly' as an importable package[^1], 2024-07-09T19:01:59,158 but it is absent from setuptools' `packages` configuration. 2024-07-09T19:01:59,159 This leads to an ambiguous overall configuration. If you want to distribute this 2024-07-09T19:01:59,159 package, please make sure that 'multiqc.plots.plotly' is explicitly added 2024-07-09T19:01:59,160 to the `packages` configuration field. 2024-07-09T19:01:59,161 Alternatively, you can also rely on setuptools' discovery methods 2024-07-09T19:01:59,162 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-07-09T19:01:59,162 instead of `find_packages(...)`/`find:`). 2024-07-09T19:01:59,164 You can read more about "package discovery" on setuptools documentation page: 2024-07-09T19:01:59,165 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-07-09T19:01:59,166 If you don't want 'multiqc.plots.plotly' to be distributed and are 2024-07-09T19:01:59,166 already explicitly excluding 'multiqc.plots.plotly' via 2024-07-09T19:01:59,167 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-07-09T19:01:59,168 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-07-09T19:01:59,168 combination with a more fine grained `package-data` configuration. 2024-07-09T19:01:59,169 You can read more about "package data files" on setuptools documentation page: 2024-07-09T19:01:59,170 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-07-09T19:01:59,171 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-07-09T19:01:59,171 even if it does not contain any `.py` files. 2024-07-09T19:01:59,172 On the other hand, currently there is no concept of package data 2024-07-09T19:01:59,172 directory, all directories are treated like packages. 2024-07-09T19:01:59,173 ******************************************************************************** 2024-07-09T19:01:59,174 !! 2024-07-09T19:01:59,174 check.warn(importable) 2024-07-09T19:01:59,175 /tmp/pip-build-env-abllg6kk/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.templates' is absent from the `packages` configuration. 2024-07-09T19:01:59,175 !! 2024-07-09T19:01:59,176 ******************************************************************************** 2024-07-09T19:01:59,177 ############################ 2024-07-09T19:01:59,177 # Package would be ignored # 2024-07-09T19:01:59,178 ############################ 2024-07-09T19:01:59,178 Python recognizes 'multiqc.templates' as an importable package[^1], 2024-07-09T19:01:59,179 but it is absent from setuptools' `packages` configuration. 2024-07-09T19:01:59,180 This leads to an ambiguous overall configuration. If you want to distribute this 2024-07-09T19:01:59,180 package, please make sure that 'multiqc.templates' is explicitly added 2024-07-09T19:01:59,181 to the `packages` configuration field. 2024-07-09T19:01:59,182 Alternatively, you can also rely on setuptools' discovery methods 2024-07-09T19:01:59,182 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-07-09T19:01:59,183 instead of `find_packages(...)`/`find:`). 2024-07-09T19:01:59,184 You can read more about "package discovery" on setuptools documentation page: 2024-07-09T19:01:59,185 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-07-09T19:01:59,186 If you don't want 'multiqc.templates' to be distributed and are 2024-07-09T19:01:59,186 already explicitly excluding 'multiqc.templates' via 2024-07-09T19:01:59,187 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-07-09T19:01:59,187 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-07-09T19:01:59,188 combination with a more fine grained `package-data` configuration. 2024-07-09T19:01:59,189 You can read more about "package data files" on setuptools documentation page: 2024-07-09T19:01:59,190 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-07-09T19:01:59,191 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-07-09T19:01:59,192 even if it does not contain any `.py` files. 2024-07-09T19:01:59,192 On the other hand, currently there is no concept of package data 2024-07-09T19:01:59,193 directory, all directories are treated like packages. 2024-07-09T19:01:59,193 ******************************************************************************** 2024-07-09T19:01:59,194 !! 2024-07-09T19:01:59,195 check.warn(importable) 2024-07-09T19:01:59,195 /tmp/pip-build-env-abllg6kk/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.templates.default' is absent from the `packages` configuration. 2024-07-09T19:01:59,196 !! 2024-07-09T19:01:59,197 ******************************************************************************** 2024-07-09T19:01:59,198 ############################ 2024-07-09T19:01:59,198 # Package would be ignored # 2024-07-09T19:01:59,198 ############################ 2024-07-09T19:01:59,199 Python recognizes 'multiqc.templates.default' as an importable package[^1], 2024-07-09T19:01:59,199 but it is absent from setuptools' `packages` configuration. 2024-07-09T19:01:59,200 This leads to an ambiguous overall configuration. If you want to distribute this 2024-07-09T19:01:59,200 package, please make sure that 'multiqc.templates.default' is explicitly added 2024-07-09T19:01:59,201 to the `packages` configuration field. 2024-07-09T19:01:59,202 Alternatively, you can also rely on setuptools' discovery methods 2024-07-09T19:01:59,203 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-07-09T19:01:59,203 instead of `find_packages(...)`/`find:`). 2024-07-09T19:01:59,204 You can read more about "package discovery" on setuptools documentation page: 2024-07-09T19:01:59,205 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-07-09T19:01:59,206 If you don't want 'multiqc.templates.default' to be distributed and are 2024-07-09T19:01:59,206 already explicitly excluding 'multiqc.templates.default' via 2024-07-09T19:01:59,207 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-07-09T19:01:59,207 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-07-09T19:01:59,208 combination with a more fine grained `package-data` configuration. 2024-07-09T19:01:59,209 You can read more about "package data files" on setuptools documentation page: 2024-07-09T19:01:59,209 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-07-09T19:01:59,211 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-07-09T19:01:59,211 even if it does not contain any `.py` files. 2024-07-09T19:01:59,212 On the other hand, currently there is no concept of package data 2024-07-09T19:01:59,212 directory, all directories are treated like packages. 2024-07-09T19:01:59,213 ******************************************************************************** 2024-07-09T19:01:59,214 !! 2024-07-09T19:01:59,214 check.warn(importable) 2024-07-09T19:01:59,215 /tmp/pip-build-env-abllg6kk/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.templates.default.assets.css' is absent from the `packages` configuration. 2024-07-09T19:01:59,215 !! 2024-07-09T19:01:59,216 ******************************************************************************** 2024-07-09T19:01:59,217 ############################ 2024-07-09T19:01:59,217 # Package would be ignored # 2024-07-09T19:01:59,218 ############################ 2024-07-09T19:01:59,218 Python recognizes 'multiqc.templates.default.assets.css' as an importable package[^1], 2024-07-09T19:01:59,219 but it is absent from setuptools' `packages` configuration. 2024-07-09T19:01:59,220 This leads to an ambiguous overall configuration. If you want to distribute this 2024-07-09T19:01:59,220 package, please make sure that 'multiqc.templates.default.assets.css' is explicitly added 2024-07-09T19:01:59,221 to the `packages` configuration field. 2024-07-09T19:01:59,222 Alternatively, you can also rely on setuptools' discovery methods 2024-07-09T19:01:59,222 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-07-09T19:01:59,223 instead of `find_packages(...)`/`find:`). 2024-07-09T19:01:59,224 You can read more about "package discovery" on setuptools documentation page: 2024-07-09T19:01:59,225 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-07-09T19:01:59,226 If you don't want 'multiqc.templates.default.assets.css' to be distributed and are 2024-07-09T19:01:59,226 already explicitly excluding 'multiqc.templates.default.assets.css' via 2024-07-09T19:01:59,226 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-07-09T19:01:59,227 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-07-09T19:01:59,228 combination with a more fine grained `package-data` configuration. 2024-07-09T19:01:59,228 You can read more about "package data files" on setuptools documentation page: 2024-07-09T19:01:59,229 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-07-09T19:01:59,230 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-07-09T19:01:59,231 even if it does not contain any `.py` files. 2024-07-09T19:01:59,231 On the other hand, currently there is no concept of package data 2024-07-09T19:01:59,232 directory, all directories are treated like packages. 2024-07-09T19:01:59,232 ******************************************************************************** 2024-07-09T19:01:59,233 !! 2024-07-09T19:01:59,234 check.warn(importable) 2024-07-09T19:01:59,234 /tmp/pip-build-env-abllg6kk/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.templates.default.assets.fonts' is absent from the `packages` configuration. 2024-07-09T19:01:59,234 !! 2024-07-09T19:01:59,235 ******************************************************************************** 2024-07-09T19:01:59,236 ############################ 2024-07-09T19:01:59,236 # Package would be ignored # 2024-07-09T19:01:59,237 ############################ 2024-07-09T19:01:59,237 Python recognizes 'multiqc.templates.default.assets.fonts' as an importable package[^1], 2024-07-09T19:01:59,238 but it is absent from setuptools' `packages` configuration. 2024-07-09T19:01:59,239 This leads to an ambiguous overall configuration. If you want to distribute this 2024-07-09T19:01:59,239 package, please make sure that 'multiqc.templates.default.assets.fonts' is explicitly added 2024-07-09T19:01:59,240 to the `packages` configuration field. 2024-07-09T19:01:59,241 Alternatively, you can also rely on setuptools' discovery methods 2024-07-09T19:01:59,241 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-07-09T19:01:59,241 instead of `find_packages(...)`/`find:`). 2024-07-09T19:01:59,242 You can read more about "package discovery" on setuptools documentation page: 2024-07-09T19:01:59,243 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-07-09T19:01:59,245 If you don't want 'multiqc.templates.default.assets.fonts' to be distributed and are 2024-07-09T19:01:59,245 already explicitly excluding 'multiqc.templates.default.assets.fonts' via 2024-07-09T19:01:59,246 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-07-09T19:01:59,246 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-07-09T19:01:59,247 combination with a more fine grained `package-data` configuration. 2024-07-09T19:01:59,247 You can read more about "package data files" on setuptools documentation page: 2024-07-09T19:01:59,249 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-07-09T19:01:59,250 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-07-09T19:01:59,251 even if it does not contain any `.py` files. 2024-07-09T19:01:59,251 On the other hand, currently there is no concept of package data 2024-07-09T19:01:59,252 directory, all directories are treated like packages. 2024-07-09T19:01:59,252 ******************************************************************************** 2024-07-09T19:01:59,253 !! 2024-07-09T19:01:59,253 check.warn(importable) 2024-07-09T19:01:59,254 /tmp/pip-build-env-abllg6kk/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.templates.default.assets.img' is absent from the `packages` configuration. 2024-07-09T19:01:59,254 !! 2024-07-09T19:01:59,255 ******************************************************************************** 2024-07-09T19:01:59,255 ############################ 2024-07-09T19:01:59,256 # Package would be ignored # 2024-07-09T19:01:59,256 ############################ 2024-07-09T19:01:59,257 Python recognizes 'multiqc.templates.default.assets.img' as an importable package[^1], 2024-07-09T19:01:59,257 but it is absent from setuptools' `packages` configuration. 2024-07-09T19:01:59,258 This leads to an ambiguous overall configuration. If you want to distribute this 2024-07-09T19:01:59,258 package, please make sure that 'multiqc.templates.default.assets.img' is explicitly added 2024-07-09T19:01:59,259 to the `packages` configuration field. 2024-07-09T19:01:59,260 Alternatively, you can also rely on setuptools' discovery methods 2024-07-09T19:01:59,260 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-07-09T19:01:59,261 instead of `find_packages(...)`/`find:`). 2024-07-09T19:01:59,261 You can read more about "package discovery" on setuptools documentation page: 2024-07-09T19:01:59,262 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-07-09T19:01:59,263 If you don't want 'multiqc.templates.default.assets.img' to be distributed and are 2024-07-09T19:01:59,264 already explicitly excluding 'multiqc.templates.default.assets.img' via 2024-07-09T19:01:59,265 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-07-09T19:01:59,265 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-07-09T19:01:59,266 combination with a more fine grained `package-data` configuration. 2024-07-09T19:01:59,266 You can read more about "package data files" on setuptools documentation page: 2024-07-09T19:01:59,268 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-07-09T19:01:59,269 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-07-09T19:01:59,270 even if it does not contain any `.py` files. 2024-07-09T19:01:59,270 On the other hand, currently there is no concept of package data 2024-07-09T19:01:59,271 directory, all directories are treated like packages. 2024-07-09T19:01:59,271 ******************************************************************************** 2024-07-09T19:01:59,272 !! 2024-07-09T19:01:59,273 check.warn(importable) 2024-07-09T19:01:59,273 /tmp/pip-build-env-abllg6kk/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.templates.default.assets.js' is absent from the `packages` configuration. 2024-07-09T19:01:59,274 !! 2024-07-09T19:01:59,275 ******************************************************************************** 2024-07-09T19:01:59,275 ############################ 2024-07-09T19:01:59,276 # Package would be ignored # 2024-07-09T19:01:59,276 ############################ 2024-07-09T19:01:59,277 Python recognizes 'multiqc.templates.default.assets.js' as an importable package[^1], 2024-07-09T19:01:59,278 but it is absent from setuptools' `packages` configuration. 2024-07-09T19:01:59,279 This leads to an ambiguous overall configuration. If you want to distribute this 2024-07-09T19:01:59,279 package, please make sure that 'multiqc.templates.default.assets.js' is explicitly added 2024-07-09T19:01:59,280 to the `packages` configuration field. 2024-07-09T19:01:59,280 Alternatively, you can also rely on setuptools' discovery methods 2024-07-09T19:01:59,281 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-07-09T19:01:59,281 instead of `find_packages(...)`/`find:`). 2024-07-09T19:01:59,282 You can read more about "package discovery" on setuptools documentation page: 2024-07-09T19:01:59,283 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-07-09T19:01:59,283 If you don't want 'multiqc.templates.default.assets.js' to be distributed and are 2024-07-09T19:01:59,284 already explicitly excluding 'multiqc.templates.default.assets.js' via 2024-07-09T19:01:59,284 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-07-09T19:01:59,285 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-07-09T19:01:59,285 combination with a more fine grained `package-data` configuration. 2024-07-09T19:01:59,286 You can read more about "package data files" on setuptools documentation page: 2024-07-09T19:01:59,287 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-07-09T19:01:59,289 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-07-09T19:01:59,289 even if it does not contain any `.py` files. 2024-07-09T19:01:59,290 On the other hand, currently there is no concept of package data 2024-07-09T19:01:59,290 directory, all directories are treated like packages. 2024-07-09T19:01:59,291 ******************************************************************************** 2024-07-09T19:01:59,292 !! 2024-07-09T19:01:59,292 check.warn(importable) 2024-07-09T19:01:59,293 /tmp/pip-build-env-abllg6kk/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.templates.default.assets.js.packages' is absent from the `packages` configuration. 2024-07-09T19:01:59,293 !! 2024-07-09T19:01:59,294 ******************************************************************************** 2024-07-09T19:01:59,294 ############################ 2024-07-09T19:01:59,295 # Package would be ignored # 2024-07-09T19:01:59,295 ############################ 2024-07-09T19:01:59,296 Python recognizes 'multiqc.templates.default.assets.js.packages' as an importable package[^1], 2024-07-09T19:01:59,297 but it is absent from setuptools' `packages` configuration. 2024-07-09T19:01:59,298 This leads to an ambiguous overall configuration. If you want to distribute this 2024-07-09T19:01:59,298 package, please make sure that 'multiqc.templates.default.assets.js.packages' is explicitly added 2024-07-09T19:01:59,299 to the `packages` configuration field. 2024-07-09T19:01:59,300 Alternatively, you can also rely on setuptools' discovery methods 2024-07-09T19:01:59,300 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-07-09T19:01:59,301 instead of `find_packages(...)`/`find:`). 2024-07-09T19:01:59,302 You can read more about "package discovery" on setuptools documentation page: 2024-07-09T19:01:59,303 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-07-09T19:01:59,304 If you don't want 'multiqc.templates.default.assets.js.packages' to be distributed and are 2024-07-09T19:01:59,305 already explicitly excluding 'multiqc.templates.default.assets.js.packages' via 2024-07-09T19:01:59,305 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-07-09T19:01:59,306 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-07-09T19:01:59,306 combination with a more fine grained `package-data` configuration. 2024-07-09T19:01:59,307 You can read more about "package data files" on setuptools documentation page: 2024-07-09T19:01:59,308 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-07-09T19:01:59,309 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-07-09T19:01:59,309 even if it does not contain any `.py` files. 2024-07-09T19:01:59,310 On the other hand, currently there is no concept of package data 2024-07-09T19:01:59,310 directory, all directories are treated like packages. 2024-07-09T19:01:59,311 ******************************************************************************** 2024-07-09T19:01:59,312 !! 2024-07-09T19:01:59,312 check.warn(importable) 2024-07-09T19:01:59,313 /tmp/pip-build-env-abllg6kk/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.templates.default.assets.js.plots' is absent from the `packages` configuration. 2024-07-09T19:01:59,313 !! 2024-07-09T19:01:59,314 ******************************************************************************** 2024-07-09T19:01:59,314 ############################ 2024-07-09T19:01:59,315 # Package would be ignored # 2024-07-09T19:01:59,315 ############################ 2024-07-09T19:01:59,316 Python recognizes 'multiqc.templates.default.assets.js.plots' as an importable package[^1], 2024-07-09T19:01:59,317 but it is absent from setuptools' `packages` configuration. 2024-07-09T19:01:59,317 This leads to an ambiguous overall configuration. If you want to distribute this 2024-07-09T19:01:59,318 package, please make sure that 'multiqc.templates.default.assets.js.plots' is explicitly added 2024-07-09T19:01:59,318 to the `packages` configuration field. 2024-07-09T19:01:59,319 Alternatively, you can also rely on setuptools' discovery methods 2024-07-09T19:01:59,320 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-07-09T19:01:59,320 instead of `find_packages(...)`/`find:`). 2024-07-09T19:01:59,321 You can read more about "package discovery" on setuptools documentation page: 2024-07-09T19:01:59,322 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-07-09T19:01:59,323 If you don't want 'multiqc.templates.default.assets.js.plots' to be distributed and are 2024-07-09T19:01:59,324 already explicitly excluding 'multiqc.templates.default.assets.js.plots' via 2024-07-09T19:01:59,324 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-07-09T19:01:59,325 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-07-09T19:01:59,325 combination with a more fine grained `package-data` configuration. 2024-07-09T19:01:59,326 You can read more about "package data files" on setuptools documentation page: 2024-07-09T19:01:59,327 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-07-09T19:01:59,329 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-07-09T19:01:59,330 even if it does not contain any `.py` files. 2024-07-09T19:01:59,330 On the other hand, currently there is no concept of package data 2024-07-09T19:01:59,330 directory, all directories are treated like packages. 2024-07-09T19:01:59,331 ******************************************************************************** 2024-07-09T19:01:59,332 !! 2024-07-09T19:01:59,333 check.warn(importable) 2024-07-09T19:01:59,333 /tmp/pip-build-env-abllg6kk/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.templates.gathered' is absent from the `packages` configuration. 2024-07-09T19:01:59,334 !! 2024-07-09T19:01:59,334 ******************************************************************************** 2024-07-09T19:01:59,335 ############################ 2024-07-09T19:01:59,335 # Package would be ignored # 2024-07-09T19:01:59,336 ############################ 2024-07-09T19:01:59,336 Python recognizes 'multiqc.templates.gathered' as an importable package[^1], 2024-07-09T19:01:59,337 but it is absent from setuptools' `packages` configuration. 2024-07-09T19:01:59,337 This leads to an ambiguous overall configuration. If you want to distribute this 2024-07-09T19:01:59,338 package, please make sure that 'multiqc.templates.gathered' is explicitly added 2024-07-09T19:01:59,338 to the `packages` configuration field. 2024-07-09T19:01:59,339 Alternatively, you can also rely on setuptools' discovery methods 2024-07-09T19:01:59,339 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-07-09T19:01:59,340 instead of `find_packages(...)`/`find:`). 2024-07-09T19:01:59,341 You can read more about "package discovery" on setuptools documentation page: 2024-07-09T19:01:59,342 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-07-09T19:01:59,343 If you don't want 'multiqc.templates.gathered' to be distributed and are 2024-07-09T19:01:59,343 already explicitly excluding 'multiqc.templates.gathered' via 2024-07-09T19:01:59,344 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-07-09T19:01:59,344 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-07-09T19:01:59,345 combination with a more fine grained `package-data` configuration. 2024-07-09T19:01:59,346 You can read more about "package data files" on setuptools documentation page: 2024-07-09T19:01:59,346 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-07-09T19:01:59,348 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-07-09T19:01:59,349 even if it does not contain any `.py` files. 2024-07-09T19:01:59,349 On the other hand, currently there is no concept of package data 2024-07-09T19:01:59,349 directory, all directories are treated like packages. 2024-07-09T19:01:59,350 ******************************************************************************** 2024-07-09T19:01:59,351 !! 2024-07-09T19:01:59,352 check.warn(importable) 2024-07-09T19:01:59,352 /tmp/pip-build-env-abllg6kk/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.templates.geo' is absent from the `packages` configuration. 2024-07-09T19:01:59,353 !! 2024-07-09T19:01:59,354 ******************************************************************************** 2024-07-09T19:01:59,354 ############################ 2024-07-09T19:01:59,355 # Package would be ignored # 2024-07-09T19:01:59,356 ############################ 2024-07-09T19:01:59,356 Python recognizes 'multiqc.templates.geo' as an importable package[^1], 2024-07-09T19:01:59,357 but it is absent from setuptools' `packages` configuration. 2024-07-09T19:01:59,358 This leads to an ambiguous overall configuration. If you want to distribute this 2024-07-09T19:01:59,358 package, please make sure that 'multiqc.templates.geo' is explicitly added 2024-07-09T19:01:59,359 to the `packages` configuration field. 2024-07-09T19:01:59,360 Alternatively, you can also rely on setuptools' discovery methods 2024-07-09T19:01:59,361 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-07-09T19:01:59,361 instead of `find_packages(...)`/`find:`). 2024-07-09T19:01:59,362 You can read more about "package discovery" on setuptools documentation page: 2024-07-09T19:01:59,363 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-07-09T19:01:59,364 If you don't want 'multiqc.templates.geo' to be distributed and are 2024-07-09T19:01:59,364 already explicitly excluding 'multiqc.templates.geo' via 2024-07-09T19:01:59,364 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-07-09T19:01:59,365 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-07-09T19:01:59,365 combination with a more fine grained `package-data` configuration. 2024-07-09T19:01:59,366 You can read more about "package data files" on setuptools documentation page: 2024-07-09T19:01:59,367 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-07-09T19:01:59,368 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-07-09T19:01:59,369 even if it does not contain any `.py` files. 2024-07-09T19:01:59,369 On the other hand, currently there is no concept of package data 2024-07-09T19:01:59,369 directory, all directories are treated like packages. 2024-07-09T19:01:59,370 ******************************************************************************** 2024-07-09T19:01:59,371 !! 2024-07-09T19:01:59,371 check.warn(importable) 2024-07-09T19:01:59,372 /tmp/pip-build-env-abllg6kk/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.templates.geo.assets.css' is absent from the `packages` configuration. 2024-07-09T19:01:59,372 !! 2024-07-09T19:01:59,373 ******************************************************************************** 2024-07-09T19:01:59,374 ############################ 2024-07-09T19:01:59,374 # Package would be ignored # 2024-07-09T19:01:59,375 ############################ 2024-07-09T19:01:59,375 Python recognizes 'multiqc.templates.geo.assets.css' as an importable package[^1], 2024-07-09T19:01:59,376 but it is absent from setuptools' `packages` configuration. 2024-07-09T19:01:59,377 This leads to an ambiguous overall configuration. If you want to distribute this 2024-07-09T19:01:59,377 package, please make sure that 'multiqc.templates.geo.assets.css' is explicitly added 2024-07-09T19:01:59,378 to the `packages` configuration field. 2024-07-09T19:01:59,379 Alternatively, you can also rely on setuptools' discovery methods 2024-07-09T19:01:59,379 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-07-09T19:01:59,380 instead of `find_packages(...)`/`find:`). 2024-07-09T19:01:59,381 You can read more about "package discovery" on setuptools documentation page: 2024-07-09T19:01:59,382 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-07-09T19:01:59,383 If you don't want 'multiqc.templates.geo.assets.css' to be distributed and are 2024-07-09T19:01:59,383 already explicitly excluding 'multiqc.templates.geo.assets.css' via 2024-07-09T19:01:59,383 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-07-09T19:01:59,384 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-07-09T19:01:59,385 combination with a more fine grained `package-data` configuration. 2024-07-09T19:01:59,386 You can read more about "package data files" on setuptools documentation page: 2024-07-09T19:01:59,387 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-07-09T19:01:59,388 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-07-09T19:01:59,389 even if it does not contain any `.py` files. 2024-07-09T19:01:59,389 On the other hand, currently there is no concept of package data 2024-07-09T19:01:59,389 directory, all directories are treated like packages. 2024-07-09T19:01:59,390 ******************************************************************************** 2024-07-09T19:01:59,391 !! 2024-07-09T19:01:59,391 check.warn(importable) 2024-07-09T19:01:59,391 /tmp/pip-build-env-abllg6kk/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.templates.geo.assets.img' is absent from the `packages` configuration. 2024-07-09T19:01:59,392 !! 2024-07-09T19:01:59,393 ******************************************************************************** 2024-07-09T19:01:59,393 ############################ 2024-07-09T19:01:59,394 # Package would be ignored # 2024-07-09T19:01:59,394 ############################ 2024-07-09T19:01:59,395 Python recognizes 'multiqc.templates.geo.assets.img' as an importable package[^1], 2024-07-09T19:01:59,395 but it is absent from setuptools' `packages` configuration. 2024-07-09T19:01:59,396 This leads to an ambiguous overall configuration. If you want to distribute this 2024-07-09T19:01:59,396 package, please make sure that 'multiqc.templates.geo.assets.img' is explicitly added 2024-07-09T19:01:59,397 to the `packages` configuration field. 2024-07-09T19:01:59,398 Alternatively, you can also rely on setuptools' discovery methods 2024-07-09T19:01:59,398 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-07-09T19:01:59,399 instead of `find_packages(...)`/`find:`). 2024-07-09T19:01:59,400 You can read more about "package discovery" on setuptools documentation page: 2024-07-09T19:01:59,401 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-07-09T19:01:59,402 If you don't want 'multiqc.templates.geo.assets.img' to be distributed and are 2024-07-09T19:01:59,402 already explicitly excluding 'multiqc.templates.geo.assets.img' via 2024-07-09T19:01:59,403 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-07-09T19:01:59,403 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-07-09T19:01:59,403 combination with a more fine grained `package-data` configuration. 2024-07-09T19:01:59,405 You can read more about "package data files" on setuptools documentation page: 2024-07-09T19:01:59,406 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-07-09T19:01:59,407 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-07-09T19:01:59,408 even if it does not contain any `.py` files. 2024-07-09T19:01:59,408 On the other hand, currently there is no concept of package data 2024-07-09T19:01:59,409 directory, all directories are treated like packages. 2024-07-09T19:01:59,409 ******************************************************************************** 2024-07-09T19:01:59,410 !! 2024-07-09T19:01:59,411 check.warn(importable) 2024-07-09T19:01:59,411 /tmp/pip-build-env-abllg6kk/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.templates.sections' is absent from the `packages` configuration. 2024-07-09T19:01:59,412 !! 2024-07-09T19:01:59,413 ******************************************************************************** 2024-07-09T19:01:59,413 ############################ 2024-07-09T19:01:59,414 # Package would be ignored # 2024-07-09T19:01:59,414 ############################ 2024-07-09T19:01:59,415 Python recognizes 'multiqc.templates.sections' as an importable package[^1], 2024-07-09T19:01:59,415 but it is absent from setuptools' `packages` configuration. 2024-07-09T19:01:59,416 This leads to an ambiguous overall configuration. If you want to distribute this 2024-07-09T19:01:59,416 package, please make sure that 'multiqc.templates.sections' is explicitly added 2024-07-09T19:01:59,417 to the `packages` configuration field. 2024-07-09T19:01:59,418 Alternatively, you can also rely on setuptools' discovery methods 2024-07-09T19:01:59,418 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-07-09T19:01:59,418 instead of `find_packages(...)`/`find:`). 2024-07-09T19:01:59,419 You can read more about "package discovery" on setuptools documentation page: 2024-07-09T19:01:59,420 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-07-09T19:01:59,421 If you don't want 'multiqc.templates.sections' to be distributed and are 2024-07-09T19:01:59,421 already explicitly excluding 'multiqc.templates.sections' via 2024-07-09T19:01:59,422 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-07-09T19:01:59,422 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-07-09T19:01:59,423 combination with a more fine grained `package-data` configuration. 2024-07-09T19:01:59,424 You can read more about "package data files" on setuptools documentation page: 2024-07-09T19:01:59,425 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-07-09T19:01:59,426 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-07-09T19:01:59,426 even if it does not contain any `.py` files. 2024-07-09T19:01:59,427 On the other hand, currently there is no concept of package data 2024-07-09T19:01:59,427 directory, all directories are treated like packages. 2024-07-09T19:01:59,428 ******************************************************************************** 2024-07-09T19:01:59,429 !! 2024-07-09T19:01:59,429 check.warn(importable) 2024-07-09T19:01:59,430 /tmp/pip-build-env-abllg6kk/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.templates.simple' is absent from the `packages` configuration. 2024-07-09T19:01:59,430 !! 2024-07-09T19:01:59,431 ******************************************************************************** 2024-07-09T19:01:59,432 ############################ 2024-07-09T19:01:59,432 # Package would be ignored # 2024-07-09T19:01:59,433 ############################ 2024-07-09T19:01:59,433 Python recognizes 'multiqc.templates.simple' as an importable package[^1], 2024-07-09T19:01:59,433 but it is absent from setuptools' `packages` configuration. 2024-07-09T19:01:59,435 This leads to an ambiguous overall configuration. If you want to distribute this 2024-07-09T19:01:59,435 package, please make sure that 'multiqc.templates.simple' is explicitly added 2024-07-09T19:01:59,436 to the `packages` configuration field. 2024-07-09T19:01:59,437 Alternatively, you can also rely on setuptools' discovery methods 2024-07-09T19:01:59,437 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-07-09T19:01:59,437 instead of `find_packages(...)`/`find:`). 2024-07-09T19:01:59,438 You can read more about "package discovery" on setuptools documentation page: 2024-07-09T19:01:59,440 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-07-09T19:01:59,441 If you don't want 'multiqc.templates.simple' to be distributed and are 2024-07-09T19:01:59,441 already explicitly excluding 'multiqc.templates.simple' via 2024-07-09T19:01:59,442 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-07-09T19:01:59,442 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-07-09T19:01:59,443 combination with a more fine grained `package-data` configuration. 2024-07-09T19:01:59,444 You can read more about "package data files" on setuptools documentation page: 2024-07-09T19:01:59,444 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-07-09T19:01:59,446 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-07-09T19:01:59,446 even if it does not contain any `.py` files. 2024-07-09T19:01:59,446 On the other hand, currently there is no concept of package data 2024-07-09T19:01:59,447 directory, all directories are treated like packages. 2024-07-09T19:01:59,447 ******************************************************************************** 2024-07-09T19:01:59,448 !! 2024-07-09T19:01:59,449 check.warn(importable) 2024-07-09T19:01:59,449 /tmp/pip-build-env-abllg6kk/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.utils' is absent from the `packages` configuration. 2024-07-09T19:01:59,450 !! 2024-07-09T19:01:59,451 ******************************************************************************** 2024-07-09T19:01:59,451 ############################ 2024-07-09T19:01:59,451 # Package would be ignored # 2024-07-09T19:01:59,452 ############################ 2024-07-09T19:01:59,452 Python recognizes 'multiqc.utils' as an importable package[^1], 2024-07-09T19:01:59,453 but it is absent from setuptools' `packages` configuration. 2024-07-09T19:01:59,454 This leads to an ambiguous overall configuration. If you want to distribute this 2024-07-09T19:01:59,454 package, please make sure that 'multiqc.utils' is explicitly added 2024-07-09T19:01:59,455 to the `packages` configuration field. 2024-07-09T19:01:59,456 Alternatively, you can also rely on setuptools' discovery methods 2024-07-09T19:01:59,456 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-07-09T19:01:59,457 instead of `find_packages(...)`/`find:`). 2024-07-09T19:01:59,458 You can read more about "package discovery" on setuptools documentation page: 2024-07-09T19:01:59,458 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-07-09T19:01:59,459 If you don't want 'multiqc.utils' to be distributed and are 2024-07-09T19:01:59,460 already explicitly excluding 'multiqc.utils' via 2024-07-09T19:01:59,461 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-07-09T19:01:59,461 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-07-09T19:01:59,462 combination with a more fine grained `package-data` configuration. 2024-07-09T19:01:59,463 You can read more about "package data files" on setuptools documentation page: 2024-07-09T19:01:59,465 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-07-09T19:01:59,466 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-07-09T19:01:59,467 even if it does not contain any `.py` files. 2024-07-09T19:01:59,467 On the other hand, currently there is no concept of package data 2024-07-09T19:01:59,468 directory, all directories are treated like packages. 2024-07-09T19:01:59,468 ******************************************************************************** 2024-07-09T19:01:59,469 !! 2024-07-09T19:01:59,470 check.warn(importable) 2024-07-09T19:01:59,470 copying multiqc/config_defaults.yaml -> build/lib/multiqc 2024-07-09T19:01:59,471 copying multiqc/search_patterns.yaml -> build/lib/multiqc 2024-07-09T19:01:59,471 creating build/lib/multiqc/core 2024-07-09T19:01:59,472 copying multiqc/core/__init__.py -> build/lib/multiqc/core 2024-07-09T19:01:59,472 copying multiqc/core/exceptions.py -> build/lib/multiqc/core 2024-07-09T19:01:59,473 copying multiqc/core/exec_modules.py -> build/lib/multiqc/core 2024-07-09T19:01:59,473 copying multiqc/core/file_search.py -> build/lib/multiqc/core 2024-07-09T19:01:59,473 copying multiqc/core/log_and_rich.py -> build/lib/multiqc/core 2024-07-09T19:01:59,474 copying multiqc/core/order_modules_and_sections.py -> build/lib/multiqc/core 2024-07-09T19:01:59,474 copying multiqc/core/plugin_hooks.py -> build/lib/multiqc/core 2024-07-09T19:01:59,475 copying multiqc/core/software_versions.py -> build/lib/multiqc/core 2024-07-09T19:01:59,475 copying multiqc/core/strict_helpers.py -> build/lib/multiqc/core 2024-07-09T19:01:59,475 copying multiqc/core/tmp_dir.py -> build/lib/multiqc/core 2024-07-09T19:01:59,476 copying multiqc/core/update_config.py -> build/lib/multiqc/core 2024-07-09T19:01:59,477 copying multiqc/core/version_check.py -> build/lib/multiqc/core 2024-07-09T19:01:59,477 copying multiqc/core/write_results.py -> build/lib/multiqc/core 2024-07-09T19:01:59,477 creating build/lib/multiqc/modules 2024-07-09T19:01:59,478 copying multiqc/modules/__init__.py -> build/lib/multiqc/modules 2024-07-09T19:01:59,479 copying multiqc/modules/profile_runtime.py -> build/lib/multiqc/modules 2024-07-09T19:01:59,479 copying multiqc/modules/software_versions.py -> build/lib/multiqc/modules 2024-07-09T19:01:59,480 creating build/lib/multiqc/modules/adapterremoval 2024-07-09T19:01:59,480 copying multiqc/modules/adapterremoval/__init__.py -> build/lib/multiqc/modules/adapterremoval 2024-07-09T19:01:59,481 copying multiqc/modules/adapterremoval/adapterremoval.py -> build/lib/multiqc/modules/adapterremoval 2024-07-09T19:01:59,481 creating build/lib/multiqc/modules/afterqc 2024-07-09T19:01:59,482 copying multiqc/modules/afterqc/__init__.py -> build/lib/multiqc/modules/afterqc 2024-07-09T19:01:59,482 copying multiqc/modules/afterqc/afterqc.py -> build/lib/multiqc/modules/afterqc 2024-07-09T19:01:59,483 creating build/lib/multiqc/modules/anglerfish 2024-07-09T19:01:59,483 copying multiqc/modules/anglerfish/__init__.py -> build/lib/multiqc/modules/anglerfish 2024-07-09T19:01:59,484 copying multiqc/modules/anglerfish/anglerfish.py -> build/lib/multiqc/modules/anglerfish 2024-07-09T19:01:59,484 creating build/lib/multiqc/modules/bakta 2024-07-09T19:01:59,485 copying multiqc/modules/bakta/__init__.py -> build/lib/multiqc/modules/bakta 2024-07-09T19:01:59,485 copying multiqc/modules/bakta/bakta.py -> build/lib/multiqc/modules/bakta 2024-07-09T19:01:59,486 creating build/lib/multiqc/modules/bamdst 2024-07-09T19:01:59,486 copying multiqc/modules/bamdst/__init__.py -> build/lib/multiqc/modules/bamdst 2024-07-09T19:01:59,486 copying multiqc/modules/bamdst/bamdst.py -> build/lib/multiqc/modules/bamdst 2024-07-09T19:01:59,487 creating build/lib/multiqc/modules/bamtools 2024-07-09T19:01:59,487 copying multiqc/modules/bamtools/__init__.py -> build/lib/multiqc/modules/bamtools 2024-07-09T19:01:59,488 copying multiqc/modules/bamtools/bamtools.py -> build/lib/multiqc/modules/bamtools 2024-07-09T19:01:59,489 copying multiqc/modules/bamtools/stats.py -> build/lib/multiqc/modules/bamtools 2024-07-09T19:01:59,489 creating build/lib/multiqc/modules/bbduk 2024-07-09T19:01:59,490 copying multiqc/modules/bbduk/__init__.py -> build/lib/multiqc/modules/bbduk 2024-07-09T19:01:59,490 copying multiqc/modules/bbduk/bbduk.py -> build/lib/multiqc/modules/bbduk 2024-07-09T19:01:59,491 creating build/lib/multiqc/modules/bbmap 2024-07-09T19:01:59,491 copying multiqc/modules/bbmap/__init__.py -> build/lib/multiqc/modules/bbmap 2024-07-09T19:01:59,492 copying multiqc/modules/bbmap/bbmap.py -> build/lib/multiqc/modules/bbmap 2024-07-09T19:01:59,493 copying multiqc/modules/bbmap/bbmap_filetypes.py -> build/lib/multiqc/modules/bbmap 2024-07-09T19:01:59,493 copying multiqc/modules/bbmap/plot_aqhist.py -> build/lib/multiqc/modules/bbmap 2024-07-09T19:01:59,494 copying multiqc/modules/bbmap/plot_basic_hist.py -> build/lib/multiqc/modules/bbmap 2024-07-09T19:01:59,494 copying multiqc/modules/bbmap/plot_bhist.py -> build/lib/multiqc/modules/bbmap 2024-07-09T19:01:59,495 copying multiqc/modules/bbmap/plot_bqhist.py -> build/lib/multiqc/modules/bbmap 2024-07-09T19:01:59,495 copying multiqc/modules/bbmap/plot_covhist.py -> build/lib/multiqc/modules/bbmap 2024-07-09T19:01:59,496 copying multiqc/modules/bbmap/plot_idhist.py -> build/lib/multiqc/modules/bbmap 2024-07-09T19:01:59,496 copying multiqc/modules/bbmap/plot_ihist.py -> build/lib/multiqc/modules/bbmap 2024-07-09T19:01:59,497 copying multiqc/modules/bbmap/plot_indelhist.py -> build/lib/multiqc/modules/bbmap 2024-07-09T19:01:59,497 copying multiqc/modules/bbmap/plot_mhist.py -> build/lib/multiqc/modules/bbmap 2024-07-09T19:01:59,498 copying multiqc/modules/bbmap/plot_qahist.py -> build/lib/multiqc/modules/bbmap 2024-07-09T19:01:59,498 copying multiqc/modules/bbmap/plot_qchist.py -> build/lib/multiqc/modules/bbmap 2024-07-09T19:01:59,498 copying multiqc/modules/bbmap/plot_qhist.py -> build/lib/multiqc/modules/bbmap 2024-07-09T19:01:59,499 creating build/lib/multiqc/modules/bcftools 2024-07-09T19:01:59,499 copying multiqc/modules/bcftools/__init__.py -> build/lib/multiqc/modules/bcftools 2024-07-09T19:01:59,500 copying multiqc/modules/bcftools/bcftools.py -> build/lib/multiqc/modules/bcftools 2024-07-09T19:01:59,500 copying multiqc/modules/bcftools/stats.py -> build/lib/multiqc/modules/bcftools 2024-07-09T19:01:59,501 creating build/lib/multiqc/modules/bcl2fastq 2024-07-09T19:01:59,501 copying multiqc/modules/bcl2fastq/__init__.py -> build/lib/multiqc/modules/bcl2fastq 2024-07-09T19:01:59,502 copying multiqc/modules/bcl2fastq/bcl2fastq.py -> build/lib/multiqc/modules/bcl2fastq 2024-07-09T19:01:59,502 creating build/lib/multiqc/modules/bclconvert 2024-07-09T19:01:59,502 copying multiqc/modules/bclconvert/__init__.py -> build/lib/multiqc/modules/bclconvert 2024-07-09T19:01:59,503 copying multiqc/modules/bclconvert/bclconvert.py -> build/lib/multiqc/modules/bclconvert 2024-07-09T19:01:59,503 creating build/lib/multiqc/modules/biobambam2 2024-07-09T19:01:59,504 copying multiqc/modules/biobambam2/__init__.py -> build/lib/multiqc/modules/biobambam2 2024-07-09T19:01:59,505 copying multiqc/modules/biobambam2/biobambam2.py -> build/lib/multiqc/modules/biobambam2 2024-07-09T19:01:59,505 creating build/lib/multiqc/modules/biobloomtools 2024-07-09T19:01:59,506 copying multiqc/modules/biobloomtools/__init__.py -> build/lib/multiqc/modules/biobloomtools 2024-07-09T19:01:59,506 copying multiqc/modules/biobloomtools/biobloomtools.py -> build/lib/multiqc/modules/biobloomtools 2024-07-09T19:01:59,507 creating build/lib/multiqc/modules/biscuit 2024-07-09T19:01:59,508 copying multiqc/modules/biscuit/__init__.py -> build/lib/multiqc/modules/biscuit 2024-07-09T19:01:59,508 copying multiqc/modules/biscuit/biscuit.py -> build/lib/multiqc/modules/biscuit 2024-07-09T19:01:59,509 creating build/lib/multiqc/modules/bismark 2024-07-09T19:01:59,509 copying multiqc/modules/bismark/__init__.py -> build/lib/multiqc/modules/bismark 2024-07-09T19:01:59,510 copying multiqc/modules/bismark/bismark.py -> build/lib/multiqc/modules/bismark 2024-07-09T19:01:59,510 creating build/lib/multiqc/modules/bowtie1 2024-07-09T19:01:59,511 copying multiqc/modules/bowtie1/__init__.py -> build/lib/multiqc/modules/bowtie1 2024-07-09T19:01:59,512 copying multiqc/modules/bowtie1/bowtie1.py -> build/lib/multiqc/modules/bowtie1 2024-07-09T19:01:59,512 creating build/lib/multiqc/modules/bowtie2 2024-07-09T19:01:59,513 copying multiqc/modules/bowtie2/__init__.py -> build/lib/multiqc/modules/bowtie2 2024-07-09T19:01:59,513 copying multiqc/modules/bowtie2/bowtie2.py -> build/lib/multiqc/modules/bowtie2 2024-07-09T19:01:59,514 creating build/lib/multiqc/modules/bracken 2024-07-09T19:01:59,514 copying multiqc/modules/bracken/__init__.py -> build/lib/multiqc/modules/bracken 2024-07-09T19:01:59,515 copying multiqc/modules/bracken/bracken.py -> build/lib/multiqc/modules/bracken 2024-07-09T19:01:59,515 creating build/lib/multiqc/modules/busco 2024-07-09T19:01:59,516 copying multiqc/modules/busco/__init__.py -> build/lib/multiqc/modules/busco 2024-07-09T19:01:59,516 copying multiqc/modules/busco/busco.py -> build/lib/multiqc/modules/busco 2024-07-09T19:01:59,517 creating build/lib/multiqc/modules/bustools 2024-07-09T19:01:59,517 copying multiqc/modules/bustools/__init__.py -> build/lib/multiqc/modules/bustools 2024-07-09T19:01:59,517 copying multiqc/modules/bustools/bustools.py -> build/lib/multiqc/modules/bustools 2024-07-09T19:01:59,518 creating build/lib/multiqc/modules/ccs 2024-07-09T19:01:59,518 copying multiqc/modules/ccs/__init__.py -> build/lib/multiqc/modules/ccs 2024-07-09T19:01:59,519 copying multiqc/modules/ccs/ccs.py -> build/lib/multiqc/modules/ccs 2024-07-09T19:01:59,519 creating build/lib/multiqc/modules/ccs/tests 2024-07-09T19:01:59,520 copying multiqc/modules/ccs/tests/__init__.py -> build/lib/multiqc/modules/ccs/tests 2024-07-09T19:01:59,520 copying multiqc/modules/ccs/tests/test_ccs.py -> build/lib/multiqc/modules/ccs/tests 2024-07-09T19:01:59,521 creating build/lib/multiqc/modules/cellranger 2024-07-09T19:01:59,521 copying multiqc/modules/cellranger/__init__.py -> build/lib/multiqc/modules/cellranger 2024-07-09T19:01:59,521 copying multiqc/modules/cellranger/cellranger.py -> build/lib/multiqc/modules/cellranger 2024-07-09T19:01:59,522 copying multiqc/modules/cellranger/count.py -> build/lib/multiqc/modules/cellranger 2024-07-09T19:01:59,522 copying multiqc/modules/cellranger/utils.py -> build/lib/multiqc/modules/cellranger 2024-07-09T19:01:59,523 copying multiqc/modules/cellranger/vdj.py -> build/lib/multiqc/modules/cellranger 2024-07-09T19:01:59,523 creating build/lib/multiqc/modules/checkqc 2024-07-09T19:01:59,524 copying multiqc/modules/checkqc/__init__.py -> build/lib/multiqc/modules/checkqc 2024-07-09T19:01:59,524 copying multiqc/modules/checkqc/checkqc.py -> build/lib/multiqc/modules/checkqc 2024-07-09T19:01:59,525 creating build/lib/multiqc/modules/clipandmerge 2024-07-09T19:01:59,525 copying multiqc/modules/clipandmerge/__init__.py -> build/lib/multiqc/modules/clipandmerge 2024-07-09T19:01:59,526 copying multiqc/modules/clipandmerge/clipandmerge.py -> build/lib/multiqc/modules/clipandmerge 2024-07-09T19:01:59,526 creating build/lib/multiqc/modules/clusterflow 2024-07-09T19:01:59,527 copying multiqc/modules/clusterflow/__init__.py -> build/lib/multiqc/modules/clusterflow 2024-07-09T19:01:59,527 copying multiqc/modules/clusterflow/clusterflow.py -> build/lib/multiqc/modules/clusterflow 2024-07-09T19:01:59,528 creating build/lib/multiqc/modules/conpair 2024-07-09T19:01:59,529 copying multiqc/modules/conpair/__init__.py -> build/lib/multiqc/modules/conpair 2024-07-09T19:01:59,529 copying multiqc/modules/conpair/conpair.py -> build/lib/multiqc/modules/conpair 2024-07-09T19:01:59,530 creating build/lib/multiqc/modules/custom_content 2024-07-09T19:01:59,530 copying multiqc/modules/custom_content/__init__.py -> build/lib/multiqc/modules/custom_content 2024-07-09T19:01:59,531 copying multiqc/modules/custom_content/custom_content.py -> build/lib/multiqc/modules/custom_content 2024-07-09T19:01:59,531 creating build/lib/multiqc/modules/cutadapt 2024-07-09T19:01:59,532 copying multiqc/modules/cutadapt/__init__.py -> build/lib/multiqc/modules/cutadapt 2024-07-09T19:01:59,532 copying multiqc/modules/cutadapt/cutadapt.py -> build/lib/multiqc/modules/cutadapt 2024-07-09T19:01:59,533 creating build/lib/multiqc/modules/damageprofiler 2024-07-09T19:01:59,533 copying multiqc/modules/damageprofiler/__init__.py -> build/lib/multiqc/modules/damageprofiler 2024-07-09T19:01:59,534 copying multiqc/modules/damageprofiler/damageprofiler.py -> build/lib/multiqc/modules/damageprofiler 2024-07-09T19:01:59,534 creating build/lib/multiqc/modules/dedup 2024-07-09T19:01:59,535 copying multiqc/modules/dedup/__init__.py -> build/lib/multiqc/modules/dedup 2024-07-09T19:01:59,535 copying multiqc/modules/dedup/dedup.py -> build/lib/multiqc/modules/dedup 2024-07-09T19:01:59,536 creating build/lib/multiqc/modules/deeptools 2024-07-09T19:01:59,536 copying multiqc/modules/deeptools/__init__.py -> build/lib/multiqc/modules/deeptools 2024-07-09T19:01:59,537 copying multiqc/modules/deeptools/bamPEFragmentSizeDistribution.py -> build/lib/multiqc/modules/deeptools 2024-07-09T19:01:59,537 copying multiqc/modules/deeptools/bamPEFragmentSizeTable.py -> build/lib/multiqc/modules/deeptools 2024-07-09T19:01:59,538 copying multiqc/modules/deeptools/deeptools.py -> build/lib/multiqc/modules/deeptools 2024-07-09T19:01:59,538 copying multiqc/modules/deeptools/estimateReadFiltering.py -> build/lib/multiqc/modules/deeptools 2024-07-09T19:01:59,538 copying multiqc/modules/deeptools/plotCorrelation.py -> build/lib/multiqc/modules/deeptools 2024-07-09T19:01:59,539 copying multiqc/modules/deeptools/plotCoverage.py -> build/lib/multiqc/modules/deeptools 2024-07-09T19:01:59,539 copying multiqc/modules/deeptools/plotEnrichment.py -> build/lib/multiqc/modules/deeptools 2024-07-09T19:01:59,540 copying multiqc/modules/deeptools/plotFingerprint.py -> build/lib/multiqc/modules/deeptools 2024-07-09T19:01:59,540 copying multiqc/modules/deeptools/plotPCA.py -> build/lib/multiqc/modules/deeptools 2024-07-09T19:01:59,541 copying multiqc/modules/deeptools/plotProfile.py -> build/lib/multiqc/modules/deeptools 2024-07-09T19:01:59,541 creating build/lib/multiqc/modules/diamond 2024-07-09T19:01:59,542 copying multiqc/modules/diamond/__init__.py -> build/lib/multiqc/modules/diamond 2024-07-09T19:01:59,542 copying multiqc/modules/diamond/diamond.py -> build/lib/multiqc/modules/diamond 2024-07-09T19:01:59,543 creating build/lib/multiqc/modules/disambiguate 2024-07-09T19:01:59,543 copying multiqc/modules/disambiguate/__init__.py -> build/lib/multiqc/modules/disambiguate 2024-07-09T19:01:59,543 copying multiqc/modules/disambiguate/disambiguate.py -> build/lib/multiqc/modules/disambiguate 2024-07-09T19:01:59,544 creating build/lib/multiqc/modules/dragen 2024-07-09T19:01:59,545 copying multiqc/modules/dragen/__init__.py -> build/lib/multiqc/modules/dragen 2024-07-09T19:01:59,545 copying multiqc/modules/dragen/coverage_hist.py -> build/lib/multiqc/modules/dragen 2024-07-09T19:01:59,546 copying multiqc/modules/dragen/coverage_metrics.py -> build/lib/multiqc/modules/dragen 2024-07-09T19:01:59,546 copying multiqc/modules/dragen/coverage_per_contig.py -> build/lib/multiqc/modules/dragen 2024-07-09T19:01:59,546 copying multiqc/modules/dragen/dragen.py -> build/lib/multiqc/modules/dragen 2024-07-09T19:01:59,547 copying multiqc/modules/dragen/dragen_gc_metrics.py -> build/lib/multiqc/modules/dragen 2024-07-09T19:01:59,548 copying multiqc/modules/dragen/fragment_length.py -> build/lib/multiqc/modules/dragen 2024-07-09T19:01:59,548 copying multiqc/modules/dragen/mapping_metrics.py -> build/lib/multiqc/modules/dragen 2024-07-09T19:01:59,549 copying multiqc/modules/dragen/overall_mean_cov.py -> build/lib/multiqc/modules/dragen 2024-07-09T19:01:59,549 copying multiqc/modules/dragen/ploidy_estimation_metrics.py -> build/lib/multiqc/modules/dragen 2024-07-09T19:01:59,550 copying multiqc/modules/dragen/rna_quant_metrics.py -> build/lib/multiqc/modules/dragen 2024-07-09T19:01:59,550 copying multiqc/modules/dragen/rna_transcript_cov.py -> build/lib/multiqc/modules/dragen 2024-07-09T19:01:59,551 copying multiqc/modules/dragen/sc_atac_metrics.py -> build/lib/multiqc/modules/dragen 2024-07-09T19:01:59,551 copying multiqc/modules/dragen/sc_rna_metrics.py -> build/lib/multiqc/modules/dragen 2024-07-09T19:01:59,552 copying multiqc/modules/dragen/time_metrics.py -> build/lib/multiqc/modules/dragen 2024-07-09T19:01:59,553 copying multiqc/modules/dragen/trimmer_metrics.py -> build/lib/multiqc/modules/dragen 2024-07-09T19:01:59,553 copying multiqc/modules/dragen/utils.py -> build/lib/multiqc/modules/dragen 2024-07-09T19:01:59,554 copying multiqc/modules/dragen/vc_metrics.py -> build/lib/multiqc/modules/dragen 2024-07-09T19:01:59,554 creating build/lib/multiqc/modules/dragen/tests 2024-07-09T19:01:59,555 copying multiqc/modules/dragen/tests/__init__.py -> build/lib/multiqc/modules/dragen/tests 2024-07-09T19:01:59,555 copying multiqc/modules/dragen/tests/test_dragen.py -> build/lib/multiqc/modules/dragen/tests 2024-07-09T19:01:59,556 creating build/lib/multiqc/modules/dragen_fastqc 2024-07-09T19:01:59,556 copying multiqc/modules/dragen_fastqc/__init__.py -> build/lib/multiqc/modules/dragen_fastqc 2024-07-09T19:01:59,557 copying multiqc/modules/dragen_fastqc/base_metrics.py -> build/lib/multiqc/modules/dragen_fastqc 2024-07-09T19:01:59,557 copying multiqc/modules/dragen_fastqc/content_metrics.py -> build/lib/multiqc/modules/dragen_fastqc 2024-07-09T19:01:59,557 copying multiqc/modules/dragen_fastqc/dragen_fastqc.py -> build/lib/multiqc/modules/dragen_fastqc 2024-07-09T19:01:59,558 copying multiqc/modules/dragen_fastqc/gc_metrics.py -> build/lib/multiqc/modules/dragen_fastqc 2024-07-09T19:01:59,558 copying multiqc/modules/dragen_fastqc/read_metrics.py -> build/lib/multiqc/modules/dragen_fastqc 2024-07-09T19:01:59,559 copying multiqc/modules/dragen_fastqc/util.py -> build/lib/multiqc/modules/dragen_fastqc 2024-07-09T19:01:59,559 creating build/lib/multiqc/modules/dragen_fastqc/assets 2024-07-09T19:01:59,560 creating build/lib/multiqc/modules/dragen_fastqc/assets/js 2024-07-09T19:01:59,560 copying multiqc/modules/dragen_fastqc/assets/js/multiqc_dragen_fastqc.js -> build/lib/multiqc/modules/dragen_fastqc/assets/js 2024-07-09T19:01:59,561 creating build/lib/multiqc/modules/eigenstratdatabasetools 2024-07-09T19:01:59,561 copying multiqc/modules/eigenstratdatabasetools/__init__.py -> build/lib/multiqc/modules/eigenstratdatabasetools 2024-07-09T19:01:59,562 copying multiqc/modules/eigenstratdatabasetools/eigenstratdatabasetools.py -> build/lib/multiqc/modules/eigenstratdatabasetools 2024-07-09T19:01:59,562 creating build/lib/multiqc/modules/fastp 2024-07-09T19:01:59,563 copying multiqc/modules/fastp/__init__.py -> build/lib/multiqc/modules/fastp 2024-07-09T19:01:59,563 copying multiqc/modules/fastp/fastp.py -> build/lib/multiqc/modules/fastp 2024-07-09T19:01:59,564 creating build/lib/multiqc/modules/fastq_screen 2024-07-09T19:01:59,564 copying multiqc/modules/fastq_screen/__init__.py -> build/lib/multiqc/modules/fastq_screen 2024-07-09T19:01:59,566 copying multiqc/modules/fastq_screen/fastq_screen.py -> build/lib/multiqc/modules/fastq_screen 2024-07-09T19:01:59,568 creating build/lib/multiqc/modules/fastqc 2024-07-09T19:01:59,569 copying multiqc/modules/fastqc/__init__.py -> build/lib/multiqc/modules/fastqc 2024-07-09T19:01:59,571 copying multiqc/modules/fastqc/fastqc.py -> build/lib/multiqc/modules/fastqc 2024-07-09T19:01:59,576 creating build/lib/multiqc/modules/fastqc/assets 2024-07-09T19:01:59,576 creating build/lib/multiqc/modules/fastqc/assets/css 2024-07-09T19:01:59,577 copying multiqc/modules/fastqc/assets/css/multiqc_fastqc.css -> build/lib/multiqc/modules/fastqc/assets/css 2024-07-09T19:01:59,580 creating build/lib/multiqc/modules/fastqc/assets/js 2024-07-09T19:01:59,581 copying multiqc/modules/fastqc/assets/js/multiqc_fastqc.js -> build/lib/multiqc/modules/fastqc/assets/js 2024-07-09T19:01:59,584 creating build/lib/multiqc/modules/fastqc/fastqc_theoretical_gc 2024-07-09T19:01:59,585 copying multiqc/modules/fastqc/fastqc_theoretical_gc/fastqc_theoretical_gc_hg38_genome.txt -> build/lib/multiqc/modules/fastqc/fastqc_theoretical_gc 2024-07-09T19:01:59,587 copying multiqc/modules/fastqc/fastqc_theoretical_gc/fastqc_theoretical_gc_hg38_txome.txt -> build/lib/multiqc/modules/fastqc/fastqc_theoretical_gc 2024-07-09T19:01:59,589 copying multiqc/modules/fastqc/fastqc_theoretical_gc/fastqc_theoretical_gc_mm10_genome.txt -> build/lib/multiqc/modules/fastqc/fastqc_theoretical_gc 2024-07-09T19:01:59,591 copying multiqc/modules/fastqc/fastqc_theoretical_gc/fastqc_theoretical_gc_mm10_txome.txt -> build/lib/multiqc/modules/fastqc/fastqc_theoretical_gc 2024-07-09T19:01:59,593 creating build/lib/multiqc/modules/featureCounts 2024-07-09T19:01:59,594 copying multiqc/modules/featureCounts/__init__.py -> build/lib/multiqc/modules/featureCounts 2024-07-09T19:01:59,596 copying multiqc/modules/featureCounts/feature_counts.py -> build/lib/multiqc/modules/featureCounts 2024-07-09T19:01:59,598 creating build/lib/multiqc/modules/fgbio 2024-07-09T19:01:59,599 copying multiqc/modules/fgbio/ErrorRateByReadPosition.py -> build/lib/multiqc/modules/fgbio 2024-07-09T19:01:59,602 copying multiqc/modules/fgbio/__init__.py -> build/lib/multiqc/modules/fgbio 2024-07-09T19:01:59,604 copying multiqc/modules/fgbio/fgbio.py -> build/lib/multiqc/modules/fgbio 2024-07-09T19:01:59,606 copying multiqc/modules/fgbio/groupreadsbyumi.py -> build/lib/multiqc/modules/fgbio 2024-07-09T19:01:59,608 creating build/lib/multiqc/modules/filtlong 2024-07-09T19:01:59,609 copying multiqc/modules/filtlong/__init__.py -> build/lib/multiqc/modules/filtlong 2024-07-09T19:01:59,611 copying multiqc/modules/filtlong/filtlong.py -> build/lib/multiqc/modules/filtlong 2024-07-09T19:01:59,612 creating build/lib/multiqc/modules/flash 2024-07-09T19:01:59,613 copying multiqc/modules/flash/__init__.py -> build/lib/multiqc/modules/flash 2024-07-09T19:01:59,615 copying multiqc/modules/flash/flash.py -> build/lib/multiqc/modules/flash 2024-07-09T19:01:59,618 creating build/lib/multiqc/modules/flexbar 2024-07-09T19:01:59,619 copying multiqc/modules/flexbar/__init__.py -> build/lib/multiqc/modules/flexbar 2024-07-09T19:01:59,621 copying multiqc/modules/flexbar/flexbar.py -> build/lib/multiqc/modules/flexbar 2024-07-09T19:01:59,623 creating build/lib/multiqc/modules/freyja 2024-07-09T19:01:59,624 copying multiqc/modules/freyja/__init__.py -> build/lib/multiqc/modules/freyja 2024-07-09T19:01:59,626 copying multiqc/modules/freyja/freyja.py -> build/lib/multiqc/modules/freyja 2024-07-09T19:01:59,629 creating build/lib/multiqc/modules/gatk 2024-07-09T19:01:59,630 copying multiqc/modules/gatk/__init__.py -> build/lib/multiqc/modules/gatk 2024-07-09T19:01:59,632 copying multiqc/modules/gatk/analyze_saturation_mutagenesis.py -> build/lib/multiqc/modules/gatk 2024-07-09T19:01:59,635 copying multiqc/modules/gatk/base_recalibrator.py -> build/lib/multiqc/modules/gatk 2024-07-09T19:01:59,638 copying multiqc/modules/gatk/gatk.py -> build/lib/multiqc/modules/gatk 2024-07-09T19:01:59,640 copying multiqc/modules/gatk/varianteval.py -> build/lib/multiqc/modules/gatk 2024-07-09T19:01:59,643 creating build/lib/multiqc/modules/gffcompare 2024-07-09T19:01:59,643 copying multiqc/modules/gffcompare/__init__.py -> build/lib/multiqc/modules/gffcompare 2024-07-09T19:01:59,645 copying multiqc/modules/gffcompare/gffcompare.py -> build/lib/multiqc/modules/gffcompare 2024-07-09T19:01:59,648 creating build/lib/multiqc/modules/glimpse 2024-07-09T19:01:59,649 copying multiqc/modules/glimpse/__init__.py -> build/lib/multiqc/modules/glimpse 2024-07-09T19:01:59,651 copying multiqc/modules/glimpse/err_grp.py -> build/lib/multiqc/modules/glimpse 2024-07-09T19:01:59,653 copying multiqc/modules/glimpse/err_spl.py -> build/lib/multiqc/modules/glimpse 2024-07-09T19:01:59,656 copying multiqc/modules/glimpse/glimpse.py -> build/lib/multiqc/modules/glimpse 2024-07-09T19:01:59,658 creating build/lib/multiqc/modules/goleft_indexcov 2024-07-09T19:01:59,659 copying multiqc/modules/goleft_indexcov/__init__.py -> build/lib/multiqc/modules/goleft_indexcov 2024-07-09T19:01:59,661 copying multiqc/modules/goleft_indexcov/goleft_indexcov.py -> build/lib/multiqc/modules/goleft_indexcov 2024-07-09T19:01:59,664 creating build/lib/multiqc/modules/gopeaks 2024-07-09T19:01:59,665 copying multiqc/modules/gopeaks/__init__.py -> build/lib/multiqc/modules/gopeaks 2024-07-09T19:01:59,667 copying multiqc/modules/gopeaks/gopeaks.py -> build/lib/multiqc/modules/gopeaks 2024-07-09T19:01:59,669 creating build/lib/multiqc/modules/happy 2024-07-09T19:01:59,670 copying multiqc/modules/happy/__init__.py -> build/lib/multiqc/modules/happy 2024-07-09T19:01:59,672 copying multiqc/modules/happy/happy.py -> build/lib/multiqc/modules/happy 2024-07-09T19:01:59,675 creating build/lib/multiqc/modules/hicexplorer 2024-07-09T19:01:59,676 copying multiqc/modules/hicexplorer/__init__.py -> build/lib/multiqc/modules/hicexplorer 2024-07-09T19:01:59,678 copying multiqc/modules/hicexplorer/hicexplorer.py -> build/lib/multiqc/modules/hicexplorer 2024-07-09T19:01:59,680 creating build/lib/multiqc/modules/hicpro 2024-07-09T19:01:59,681 copying multiqc/modules/hicpro/__init__.py -> build/lib/multiqc/modules/hicpro 2024-07-09T19:01:59,683 copying multiqc/modules/hicpro/hicpro.py -> build/lib/multiqc/modules/hicpro 2024-07-09T19:01:59,686 creating build/lib/multiqc/modules/hicup 2024-07-09T19:01:59,687 copying multiqc/modules/hicup/__init__.py -> build/lib/multiqc/modules/hicup 2024-07-09T19:01:59,689 copying multiqc/modules/hicup/hicup.py -> build/lib/multiqc/modules/hicup 2024-07-09T19:01:59,691 creating build/lib/multiqc/modules/hifiasm 2024-07-09T19:01:59,692 copying multiqc/modules/hifiasm/__init__.py -> build/lib/multiqc/modules/hifiasm 2024-07-09T19:01:59,694 copying multiqc/modules/hifiasm/hifiasm.py -> build/lib/multiqc/modules/hifiasm 2024-07-09T19:01:59,696 creating build/lib/multiqc/modules/hisat2 2024-07-09T19:01:59,697 copying multiqc/modules/hisat2/__init__.py -> build/lib/multiqc/modules/hisat2 2024-07-09T19:01:59,699 copying multiqc/modules/hisat2/hisat2.py -> build/lib/multiqc/modules/hisat2 2024-07-09T19:01:59,701 creating build/lib/multiqc/modules/homer 2024-07-09T19:01:59,702 copying multiqc/modules/homer/__init__.py -> build/lib/multiqc/modules/homer 2024-07-09T19:01:59,704 copying multiqc/modules/homer/findpeaks.py -> build/lib/multiqc/modules/homer 2024-07-09T19:01:59,706 copying multiqc/modules/homer/homer.py -> build/lib/multiqc/modules/homer 2024-07-09T19:01:59,708 copying multiqc/modules/homer/tagdirectory.py -> build/lib/multiqc/modules/homer 2024-07-09T19:01:59,711 creating build/lib/multiqc/modules/hops 2024-07-09T19:01:59,712 copying multiqc/modules/hops/__init__.py -> build/lib/multiqc/modules/hops 2024-07-09T19:01:59,714 copying multiqc/modules/hops/hops.py -> build/lib/multiqc/modules/hops 2024-07-09T19:01:59,716 creating build/lib/multiqc/modules/hostile 2024-07-09T19:01:59,717 copying multiqc/modules/hostile/__init__.py -> build/lib/multiqc/modules/hostile 2024-07-09T19:01:59,719 copying multiqc/modules/hostile/hostile.py -> build/lib/multiqc/modules/hostile 2024-07-09T19:01:59,721 creating build/lib/multiqc/modules/htseq 2024-07-09T19:01:59,722 copying multiqc/modules/htseq/__init__.py -> build/lib/multiqc/modules/htseq 2024-07-09T19:01:59,724 copying multiqc/modules/htseq/htseq.py -> build/lib/multiqc/modules/htseq 2024-07-09T19:01:59,726 creating build/lib/multiqc/modules/humid 2024-07-09T19:01:59,727 copying multiqc/modules/humid/__init__.py -> build/lib/multiqc/modules/humid 2024-07-09T19:01:59,729 copying multiqc/modules/humid/clusters.py -> build/lib/multiqc/modules/humid 2024-07-09T19:01:59,731 copying multiqc/modules/humid/counts.py -> build/lib/multiqc/modules/humid 2024-07-09T19:01:59,733 copying multiqc/modules/humid/humid.py -> build/lib/multiqc/modules/humid 2024-07-09T19:01:59,735 copying multiqc/modules/humid/neighbours.py -> build/lib/multiqc/modules/humid 2024-07-09T19:01:59,737 copying multiqc/modules/humid/stats.py -> build/lib/multiqc/modules/humid 2024-07-09T19:01:59,740 creating build/lib/multiqc/modules/interop 2024-07-09T19:01:59,741 copying multiqc/modules/interop/__init__.py -> build/lib/multiqc/modules/interop 2024-07-09T19:01:59,743 copying multiqc/modules/interop/interop.py -> build/lib/multiqc/modules/interop 2024-07-09T19:01:59,745 creating build/lib/multiqc/modules/isoseq 2024-07-09T19:01:59,746 copying multiqc/modules/isoseq/__init__.py -> build/lib/multiqc/modules/isoseq 2024-07-09T19:01:59,749 copying multiqc/modules/isoseq/isoseq.py -> build/lib/multiqc/modules/isoseq 2024-07-09T19:01:59,751 creating build/lib/multiqc/modules/ivar 2024-07-09T19:01:59,752 copying multiqc/modules/ivar/__init__.py -> build/lib/multiqc/modules/ivar 2024-07-09T19:01:59,754 copying multiqc/modules/ivar/ivar.py -> build/lib/multiqc/modules/ivar 2024-07-09T19:01:59,756 creating build/lib/multiqc/modules/jcvi 2024-07-09T19:01:59,757 copying multiqc/modules/jcvi/__init__.py -> build/lib/multiqc/modules/jcvi 2024-07-09T19:01:59,759 copying multiqc/modules/jcvi/jcvi.py -> build/lib/multiqc/modules/jcvi 2024-07-09T19:01:59,761 creating build/lib/multiqc/modules/jellyfish 2024-07-09T19:01:59,762 copying multiqc/modules/jellyfish/__init__.py -> build/lib/multiqc/modules/jellyfish 2024-07-09T19:01:59,764 copying multiqc/modules/jellyfish/jellyfish.py -> build/lib/multiqc/modules/jellyfish 2024-07-09T19:01:59,766 creating build/lib/multiqc/modules/kaiju 2024-07-09T19:01:59,767 copying multiqc/modules/kaiju/__init__.py -> build/lib/multiqc/modules/kaiju 2024-07-09T19:01:59,769 copying multiqc/modules/kaiju/kaiju.py -> build/lib/multiqc/modules/kaiju 2024-07-09T19:01:59,772 creating build/lib/multiqc/modules/kallisto 2024-07-09T19:01:59,772 copying multiqc/modules/kallisto/__init__.py -> build/lib/multiqc/modules/kallisto 2024-07-09T19:01:59,774 copying multiqc/modules/kallisto/kallisto.py -> build/lib/multiqc/modules/kallisto 2024-07-09T19:01:59,777 creating build/lib/multiqc/modules/kat 2024-07-09T19:01:59,778 copying multiqc/modules/kat/__init__.py -> build/lib/multiqc/modules/kat 2024-07-09T19:01:59,780 copying multiqc/modules/kat/kat.py -> build/lib/multiqc/modules/kat 2024-07-09T19:01:59,782 creating build/lib/multiqc/modules/kraken 2024-07-09T19:01:59,783 copying multiqc/modules/kraken/__init__.py -> build/lib/multiqc/modules/kraken 2024-07-09T19:01:59,785 copying multiqc/modules/kraken/kraken.py -> build/lib/multiqc/modules/kraken 2024-07-09T19:01:59,788 creating build/lib/multiqc/modules/leehom 2024-07-09T19:01:59,789 copying multiqc/modules/leehom/__init__.py -> build/lib/multiqc/modules/leehom 2024-07-09T19:01:59,791 copying multiqc/modules/leehom/leehom.py -> build/lib/multiqc/modules/leehom 2024-07-09T19:01:59,793 creating build/lib/multiqc/modules/librarian 2024-07-09T19:01:59,794 copying multiqc/modules/librarian/__init__.py -> build/lib/multiqc/modules/librarian 2024-07-09T19:01:59,796 copying multiqc/modules/librarian/librarian.py -> build/lib/multiqc/modules/librarian 2024-07-09T19:01:59,798 creating build/lib/multiqc/modules/lima 2024-07-09T19:01:59,799 copying multiqc/modules/lima/__init__.py -> build/lib/multiqc/modules/lima 2024-07-09T19:01:59,801 copying multiqc/modules/lima/lima.py -> build/lib/multiqc/modules/lima 2024-07-09T19:01:59,804 creating build/lib/multiqc/modules/longranger 2024-07-09T19:01:59,805 copying multiqc/modules/longranger/__init__.py -> build/lib/multiqc/modules/longranger 2024-07-09T19:01:59,807 copying multiqc/modules/longranger/longranger.py -> build/lib/multiqc/modules/longranger 2024-07-09T19:01:59,810 creating build/lib/multiqc/modules/macs2 2024-07-09T19:01:59,811 copying multiqc/modules/macs2/__init__.py -> build/lib/multiqc/modules/macs2 2024-07-09T19:01:59,813 copying multiqc/modules/macs2/macs2.py -> build/lib/multiqc/modules/macs2 2024-07-09T19:01:59,815 creating build/lib/multiqc/modules/malt 2024-07-09T19:01:59,816 copying multiqc/modules/malt/__init__.py -> build/lib/multiqc/modules/malt 2024-07-09T19:01:59,818 copying multiqc/modules/malt/malt.py -> build/lib/multiqc/modules/malt 2024-07-09T19:01:59,820 creating build/lib/multiqc/modules/mapdamage 2024-07-09T19:01:59,821 copying multiqc/modules/mapdamage/__init__.py -> build/lib/multiqc/modules/mapdamage 2024-07-09T19:01:59,823 copying multiqc/modules/mapdamage/mapdamage.py -> build/lib/multiqc/modules/mapdamage 2024-07-09T19:01:59,826 creating build/lib/multiqc/modules/megahit 2024-07-09T19:01:59,827 copying multiqc/modules/megahit/__init__.py -> build/lib/multiqc/modules/megahit 2024-07-09T19:01:59,829 copying multiqc/modules/megahit/megahit.py -> build/lib/multiqc/modules/megahit 2024-07-09T19:01:59,831 creating build/lib/multiqc/modules/metaphlan 2024-07-09T19:01:59,832 copying multiqc/modules/metaphlan/__init__.py -> build/lib/multiqc/modules/metaphlan 2024-07-09T19:01:59,834 copying multiqc/modules/metaphlan/metaphlan.py -> build/lib/multiqc/modules/metaphlan 2024-07-09T19:01:59,837 creating build/lib/multiqc/modules/methylqa 2024-07-09T19:01:59,838 copying multiqc/modules/methylqa/__init__.py -> build/lib/multiqc/modules/methylqa 2024-07-09T19:01:59,840 copying multiqc/modules/methylqa/methylqa.py -> build/lib/multiqc/modules/methylqa 2024-07-09T19:01:59,842 creating build/lib/multiqc/modules/minionqc 2024-07-09T19:01:59,843 copying multiqc/modules/minionqc/__init__.py -> build/lib/multiqc/modules/minionqc 2024-07-09T19:01:59,845 copying multiqc/modules/minionqc/minionqc.py -> build/lib/multiqc/modules/minionqc 2024-07-09T19:01:59,847 creating build/lib/multiqc/modules/mirtop 2024-07-09T19:01:59,848 copying multiqc/modules/mirtop/__init__.py -> build/lib/multiqc/modules/mirtop 2024-07-09T19:01:59,850 copying multiqc/modules/mirtop/mirtop.py -> build/lib/multiqc/modules/mirtop 2024-07-09T19:01:59,852 creating build/lib/multiqc/modules/mirtrace 2024-07-09T19:01:59,853 copying multiqc/modules/mirtrace/__init__.py -> build/lib/multiqc/modules/mirtrace 2024-07-09T19:01:59,855 copying multiqc/modules/mirtrace/mirtrace.py -> build/lib/multiqc/modules/mirtrace 2024-07-09T19:01:59,858 creating build/lib/multiqc/modules/mosdepth 2024-07-09T19:01:59,859 copying multiqc/modules/mosdepth/__init__.py -> build/lib/multiqc/modules/mosdepth 2024-07-09T19:01:59,861 copying multiqc/modules/mosdepth/mosdepth.py -> build/lib/multiqc/modules/mosdepth 2024-07-09T19:01:59,863 creating build/lib/multiqc/modules/motus 2024-07-09T19:01:59,864 copying multiqc/modules/motus/__init__.py -> build/lib/multiqc/modules/motus 2024-07-09T19:01:59,866 copying multiqc/modules/motus/motus.py -> build/lib/multiqc/modules/motus 2024-07-09T19:01:59,869 creating build/lib/multiqc/modules/mtnucratio 2024-07-09T19:01:59,870 copying multiqc/modules/mtnucratio/__init__.py -> build/lib/multiqc/modules/mtnucratio 2024-07-09T19:01:59,872 copying multiqc/modules/mtnucratio/mtnucratio.py -> build/lib/multiqc/modules/mtnucratio 2024-07-09T19:01:59,874 creating build/lib/multiqc/modules/multivcfanalyzer 2024-07-09T19:01:59,875 copying multiqc/modules/multivcfanalyzer/__init__.py -> build/lib/multiqc/modules/multivcfanalyzer 2024-07-09T19:01:59,877 copying multiqc/modules/multivcfanalyzer/multivcfanalyzer.py -> build/lib/multiqc/modules/multivcfanalyzer 2024-07-09T19:01:59,880 creating build/lib/multiqc/modules/nanostat 2024-07-09T19:01:59,881 copying multiqc/modules/nanostat/__init__.py -> build/lib/multiqc/modules/nanostat 2024-07-09T19:01:59,883 copying multiqc/modules/nanostat/nanostat.py -> build/lib/multiqc/modules/nanostat 2024-07-09T19:01:59,886 creating build/lib/multiqc/modules/nextclade 2024-07-09T19:01:59,886 copying multiqc/modules/nextclade/__init__.py -> build/lib/multiqc/modules/nextclade 2024-07-09T19:01:59,888 copying multiqc/modules/nextclade/nextclade.py -> build/lib/multiqc/modules/nextclade 2024-07-09T19:01:59,891 creating build/lib/multiqc/modules/ngsderive 2024-07-09T19:01:59,892 copying multiqc/modules/ngsderive/__init__.py -> build/lib/multiqc/modules/ngsderive 2024-07-09T19:01:59,894 copying multiqc/modules/ngsderive/ngsderive.py -> build/lib/multiqc/modules/ngsderive 2024-07-09T19:01:59,897 creating build/lib/multiqc/modules/nonpareil 2024-07-09T19:01:59,898 copying multiqc/modules/nonpareil/__init__.py -> build/lib/multiqc/modules/nonpareil 2024-07-09T19:01:59,900 copying multiqc/modules/nonpareil/nonpareil.py -> build/lib/multiqc/modules/nonpareil 2024-07-09T19:01:59,902 creating build/lib/multiqc/modules/odgi 2024-07-09T19:01:59,903 copying multiqc/modules/odgi/__init__.py -> build/lib/multiqc/modules/odgi 2024-07-09T19:01:59,905 copying multiqc/modules/odgi/odgi.py -> build/lib/multiqc/modules/odgi 2024-07-09T19:01:59,908 creating build/lib/multiqc/modules/optitype 2024-07-09T19:01:59,909 copying multiqc/modules/optitype/__init__.py -> build/lib/multiqc/modules/optitype 2024-07-09T19:01:59,911 copying multiqc/modules/optitype/optitype.py -> build/lib/multiqc/modules/optitype 2024-07-09T19:01:59,913 creating build/lib/multiqc/modules/pangolin 2024-07-09T19:01:59,914 copying multiqc/modules/pangolin/__init__.py -> build/lib/multiqc/modules/pangolin 2024-07-09T19:01:59,916 copying multiqc/modules/pangolin/pangolin.py -> build/lib/multiqc/modules/pangolin 2024-07-09T19:01:59,918 creating build/lib/multiqc/modules/pbmarkdup 2024-07-09T19:01:59,919 copying multiqc/modules/pbmarkdup/__init__.py -> build/lib/multiqc/modules/pbmarkdup 2024-07-09T19:01:59,921 copying multiqc/modules/pbmarkdup/pbmarkdup.py -> build/lib/multiqc/modules/pbmarkdup 2024-07-09T19:01:59,923 creating build/lib/multiqc/modules/peddy 2024-07-09T19:01:59,924 copying multiqc/modules/peddy/__init__.py -> build/lib/multiqc/modules/peddy 2024-07-09T19:01:59,926 copying multiqc/modules/peddy/peddy.py -> build/lib/multiqc/modules/peddy 2024-07-09T19:01:59,929 creating build/lib/multiqc/modules/phantompeakqualtools 2024-07-09T19:01:59,929 copying multiqc/modules/phantompeakqualtools/__init__.py -> build/lib/multiqc/modules/phantompeakqualtools 2024-07-09T19:01:59,931 copying multiqc/modules/phantompeakqualtools/phantompeakqualtools.py -> build/lib/multiqc/modules/phantompeakqualtools 2024-07-09T19:01:59,933 creating build/lib/multiqc/modules/picard 2024-07-09T19:01:59,934 copying multiqc/modules/picard/AlignmentSummaryMetrics.py -> build/lib/multiqc/modules/picard 2024-07-09T19:01:59,937 copying multiqc/modules/picard/BaseDistributionByCycleMetrics.py -> build/lib/multiqc/modules/picard 2024-07-09T19:01:59,939 copying multiqc/modules/picard/CrosscheckFingerprints.py -> build/lib/multiqc/modules/picard 2024-07-09T19:01:59,942 copying multiqc/modules/picard/ExtractIlluminaBarcodes.py -> build/lib/multiqc/modules/picard 2024-07-09T19:01:59,944 copying multiqc/modules/picard/GcBiasMetrics.py -> build/lib/multiqc/modules/picard 2024-07-09T19:01:59,946 copying multiqc/modules/picard/HsMetrics.py -> build/lib/multiqc/modules/picard 2024-07-09T19:01:59,949 copying multiqc/modules/picard/IlluminaBasecallingMetrics.py -> build/lib/multiqc/modules/picard 2024-07-09T19:01:59,951 copying multiqc/modules/picard/IlluminaLaneMetrics.py -> build/lib/multiqc/modules/picard 2024-07-09T19:01:59,954 copying multiqc/modules/picard/InsertSizeMetrics.py -> build/lib/multiqc/modules/picard 2024-07-09T19:01:59,956 copying multiqc/modules/picard/MarkDuplicates.py -> build/lib/multiqc/modules/picard 2024-07-09T19:01:59,959 copying multiqc/modules/picard/MarkIlluminaAdapters.py -> build/lib/multiqc/modules/picard 2024-07-09T19:01:59,961 copying multiqc/modules/picard/OxoGMetrics.py -> build/lib/multiqc/modules/picard 2024-07-09T19:01:59,963 copying multiqc/modules/picard/QualityByCycleMetrics.py -> build/lib/multiqc/modules/picard 2024-07-09T19:01:59,965 copying multiqc/modules/picard/QualityScoreDistributionMetrics.py -> build/lib/multiqc/modules/picard 2024-07-09T19:01:59,967 copying multiqc/modules/picard/QualityYieldMetrics.py -> build/lib/multiqc/modules/picard 2024-07-09T19:01:59,969 copying multiqc/modules/picard/RnaSeqMetrics.py -> build/lib/multiqc/modules/picard 2024-07-09T19:01:59,971 copying multiqc/modules/picard/RrbsSummaryMetrics.py -> build/lib/multiqc/modules/picard 2024-07-09T19:01:59,974 copying multiqc/modules/picard/TargetedPcrMetrics.py -> build/lib/multiqc/modules/picard 2024-07-09T19:01:59,976 copying multiqc/modules/picard/ValidateSamFile.py -> build/lib/multiqc/modules/picard 2024-07-09T19:01:59,979 copying multiqc/modules/picard/VariantCallingMetrics.py -> build/lib/multiqc/modules/picard 2024-07-09T19:01:59,982 copying multiqc/modules/picard/WgsMetrics.py -> build/lib/multiqc/modules/picard 2024-07-09T19:01:59,984 copying multiqc/modules/picard/__init__.py -> build/lib/multiqc/modules/picard 2024-07-09T19:01:59,986 copying multiqc/modules/picard/picard.py -> build/lib/multiqc/modules/picard 2024-07-09T19:01:59,988 copying multiqc/modules/picard/util.py -> build/lib/multiqc/modules/picard 2024-07-09T19:01:59,990 creating build/lib/multiqc/modules/picard/tests 2024-07-09T19:01:59,991 copying multiqc/modules/picard/tests/__init__.py -> build/lib/multiqc/modules/picard/tests 2024-07-09T19:01:59,993 copying multiqc/modules/picard/tests/test_picard.py -> build/lib/multiqc/modules/picard/tests 2024-07-09T19:01:59,995 creating build/lib/multiqc/modules/porechop 2024-07-09T19:01:59,996 copying multiqc/modules/porechop/__init__.py -> build/lib/multiqc/modules/porechop 2024-07-09T19:01:59,998 copying multiqc/modules/porechop/porechop.py -> build/lib/multiqc/modules/porechop 2024-07-09T19:02:00,001 creating build/lib/multiqc/modules/preseq 2024-07-09T19:02:00,002 copying multiqc/modules/preseq/__init__.py -> build/lib/multiqc/modules/preseq 2024-07-09T19:02:00,004 copying multiqc/modules/preseq/preseq.py -> build/lib/multiqc/modules/preseq 2024-07-09T19:02:00,006 creating build/lib/multiqc/modules/prinseqplusplus 2024-07-09T19:02:00,007 copying multiqc/modules/prinseqplusplus/__init__.py -> build/lib/multiqc/modules/prinseqplusplus 2024-07-09T19:02:00,009 copying multiqc/modules/prinseqplusplus/prinseqplusplus.py -> build/lib/multiqc/modules/prinseqplusplus 2024-07-09T19:02:00,012 creating build/lib/multiqc/modules/prokka 2024-07-09T19:02:00,012 copying multiqc/modules/prokka/__init__.py -> build/lib/multiqc/modules/prokka 2024-07-09T19:02:00,014 copying multiqc/modules/prokka/prokka.py -> build/lib/multiqc/modules/prokka 2024-07-09T19:02:00,017 creating build/lib/multiqc/modules/purple 2024-07-09T19:02:00,018 copying multiqc/modules/purple/__init__.py -> build/lib/multiqc/modules/purple 2024-07-09T19:02:00,020 copying multiqc/modules/purple/purple.py -> build/lib/multiqc/modules/purple 2024-07-09T19:02:00,022 creating build/lib/multiqc/modules/pychopper 2024-07-09T19:02:00,023 copying multiqc/modules/pychopper/__init__.py -> build/lib/multiqc/modules/pychopper 2024-07-09T19:02:00,026 copying multiqc/modules/pychopper/pychopper.py -> build/lib/multiqc/modules/pychopper 2024-07-09T19:02:00,028 creating build/lib/multiqc/modules/pycoqc 2024-07-09T19:02:00,029 copying multiqc/modules/pycoqc/__init__.py -> build/lib/multiqc/modules/pycoqc 2024-07-09T19:02:00,031 copying multiqc/modules/pycoqc/pycoqc.py -> build/lib/multiqc/modules/pycoqc 2024-07-09T19:02:00,034 creating build/lib/multiqc/modules/qc3C 2024-07-09T19:02:00,034 copying multiqc/modules/qc3C/__init__.py -> build/lib/multiqc/modules/qc3C 2024-07-09T19:02:00,036 copying multiqc/modules/qc3C/qc3C.py -> build/lib/multiqc/modules/qc3C 2024-07-09T19:02:00,039 creating build/lib/multiqc/modules/qorts 2024-07-09T19:02:00,040 copying multiqc/modules/qorts/__init__.py -> build/lib/multiqc/modules/qorts 2024-07-09T19:02:00,042 copying multiqc/modules/qorts/qorts.py -> build/lib/multiqc/modules/qorts 2024-07-09T19:02:00,045 creating build/lib/multiqc/modules/qualimap 2024-07-09T19:02:00,046 copying multiqc/modules/qualimap/QM_BamQC.py -> build/lib/multiqc/modules/qualimap 2024-07-09T19:02:00,049 copying multiqc/modules/qualimap/QM_RNASeq.py -> build/lib/multiqc/modules/qualimap 2024-07-09T19:02:00,052 copying multiqc/modules/qualimap/__init__.py -> build/lib/multiqc/modules/qualimap 2024-07-09T19:02:00,054 copying multiqc/modules/qualimap/qualimap.py -> build/lib/multiqc/modules/qualimap 2024-07-09T19:02:00,055 creating build/lib/multiqc/modules/quast 2024-07-09T19:02:00,056 copying multiqc/modules/quast/__init__.py -> build/lib/multiqc/modules/quast 2024-07-09T19:02:00,058 copying multiqc/modules/quast/quast.py -> build/lib/multiqc/modules/quast 2024-07-09T19:02:00,061 creating build/lib/multiqc/modules/rna_seqc 2024-07-09T19:02:00,062 copying multiqc/modules/rna_seqc/__init__.py -> build/lib/multiqc/modules/rna_seqc 2024-07-09T19:02:00,064 copying multiqc/modules/rna_seqc/rna_seqc.py -> build/lib/multiqc/modules/rna_seqc 2024-07-09T19:02:00,067 creating build/lib/multiqc/modules/rockhopper 2024-07-09T19:02:00,067 copying multiqc/modules/rockhopper/__init__.py -> build/lib/multiqc/modules/rockhopper 2024-07-09T19:02:00,069 copying multiqc/modules/rockhopper/rockhopper.py -> build/lib/multiqc/modules/rockhopper 2024-07-09T19:02:00,072 creating build/lib/multiqc/modules/rsem 2024-07-09T19:02:00,072 copying multiqc/modules/rsem/__init__.py -> build/lib/multiqc/modules/rsem 2024-07-09T19:02:00,074 copying multiqc/modules/rsem/rsem.py -> build/lib/multiqc/modules/rsem 2024-07-09T19:02:00,076 creating build/lib/multiqc/modules/rseqc 2024-07-09T19:02:00,077 copying multiqc/modules/rseqc/__init__.py -> build/lib/multiqc/modules/rseqc 2024-07-09T19:02:00,079 copying multiqc/modules/rseqc/bam_stat.py -> build/lib/multiqc/modules/rseqc 2024-07-09T19:02:00,081 copying multiqc/modules/rseqc/gene_body_coverage.py -> build/lib/multiqc/modules/rseqc 2024-07-09T19:02:00,083 copying multiqc/modules/rseqc/infer_experiment.py -> build/lib/multiqc/modules/rseqc 2024-07-09T19:02:00,086 copying multiqc/modules/rseqc/inner_distance.py -> build/lib/multiqc/modules/rseqc 2024-07-09T19:02:00,087 copying multiqc/modules/rseqc/junction_annotation.py -> build/lib/multiqc/modules/rseqc 2024-07-09T19:02:00,090 copying multiqc/modules/rseqc/junction_saturation.py -> build/lib/multiqc/modules/rseqc 2024-07-09T19:02:00,092 copying multiqc/modules/rseqc/read_distribution.py -> build/lib/multiqc/modules/rseqc 2024-07-09T19:02:00,094 copying multiqc/modules/rseqc/read_duplication.py -> build/lib/multiqc/modules/rseqc 2024-07-09T19:02:00,096 copying multiqc/modules/rseqc/read_gc.py -> build/lib/multiqc/modules/rseqc 2024-07-09T19:02:00,098 copying multiqc/modules/rseqc/rseqc.py -> build/lib/multiqc/modules/rseqc 2024-07-09T19:02:00,100 copying multiqc/modules/rseqc/tin.py -> build/lib/multiqc/modules/rseqc 2024-07-09T19:02:00,102 creating build/lib/multiqc/modules/rseqc/assets 2024-07-09T19:02:00,103 creating build/lib/multiqc/modules/rseqc/assets/js 2024-07-09T19:02:00,104 copying multiqc/modules/rseqc/assets/js/multiqc_rseqc.js -> build/lib/multiqc/modules/rseqc/assets/js 2024-07-09T19:02:00,106 creating build/lib/multiqc/modules/salmon 2024-07-09T19:02:00,107 copying multiqc/modules/salmon/__init__.py -> build/lib/multiqc/modules/salmon 2024-07-09T19:02:00,109 copying multiqc/modules/salmon/salmon.py -> build/lib/multiqc/modules/salmon 2024-07-09T19:02:00,111 creating build/lib/multiqc/modules/sambamba 2024-07-09T19:02:00,112 copying multiqc/modules/sambamba/__init__.py -> build/lib/multiqc/modules/sambamba 2024-07-09T19:02:00,114 copying multiqc/modules/sambamba/markdup.py -> build/lib/multiqc/modules/sambamba 2024-07-09T19:02:00,117 copying multiqc/modules/sambamba/sambamba.py -> build/lib/multiqc/modules/sambamba 2024-07-09T19:02:00,119 creating build/lib/multiqc/modules/samblaster 2024-07-09T19:02:00,119 copying multiqc/modules/samblaster/__init__.py -> build/lib/multiqc/modules/samblaster 2024-07-09T19:02:00,122 copying multiqc/modules/samblaster/samblaster.py -> build/lib/multiqc/modules/samblaster 2024-07-09T19:02:00,124 creating build/lib/multiqc/modules/samtools 2024-07-09T19:02:00,125 copying multiqc/modules/samtools/__init__.py -> build/lib/multiqc/modules/samtools 2024-07-09T19:02:00,127 copying multiqc/modules/samtools/coverage.py -> build/lib/multiqc/modules/samtools 2024-07-09T19:02:00,129 copying multiqc/modules/samtools/flagstat.py -> build/lib/multiqc/modules/samtools 2024-07-09T19:02:00,132 copying multiqc/modules/samtools/idxstats.py -> build/lib/multiqc/modules/samtools 2024-07-09T19:02:00,134 copying multiqc/modules/samtools/markdup.py -> build/lib/multiqc/modules/samtools 2024-07-09T19:02:00,136 copying multiqc/modules/samtools/rmdup.py -> build/lib/multiqc/modules/samtools 2024-07-09T19:02:00,138 copying multiqc/modules/samtools/samtools.py -> build/lib/multiqc/modules/samtools 2024-07-09T19:02:00,140 copying multiqc/modules/samtools/stats.py -> build/lib/multiqc/modules/samtools 2024-07-09T19:02:00,142 creating build/lib/multiqc/modules/samtools/tests 2024-07-09T19:02:00,143 copying multiqc/modules/samtools/tests/__init__.py -> build/lib/multiqc/modules/samtools/tests 2024-07-09T19:02:00,145 copying multiqc/modules/samtools/tests/test_flagstat.py -> build/lib/multiqc/modules/samtools/tests 2024-07-09T19:02:00,147 creating build/lib/multiqc/modules/sargasso 2024-07-09T19:02:00,148 copying multiqc/modules/sargasso/__init__.py -> build/lib/multiqc/modules/sargasso 2024-07-09T19:02:00,150 copying multiqc/modules/sargasso/sargasso.py -> build/lib/multiqc/modules/sargasso 2024-07-09T19:02:00,152 creating build/lib/multiqc/modules/seqera_cli 2024-07-09T19:02:00,153 copying multiqc/modules/seqera_cli/__init__.py -> build/lib/multiqc/modules/seqera_cli 2024-07-09T19:02:00,155 copying multiqc/modules/seqera_cli/seqera_cli.py -> build/lib/multiqc/modules/seqera_cli 2024-07-09T19:02:00,157 creating build/lib/multiqc/modules/sequali 2024-07-09T19:02:00,158 copying multiqc/modules/sequali/__init__.py -> build/lib/multiqc/modules/sequali 2024-07-09T19:02:00,160 copying multiqc/modules/sequali/sequali.py -> build/lib/multiqc/modules/sequali 2024-07-09T19:02:00,163 creating build/lib/multiqc/modules/seqwho 2024-07-09T19:02:00,164 copying multiqc/modules/seqwho/__init__.py -> build/lib/multiqc/modules/seqwho 2024-07-09T19:02:00,166 copying multiqc/modules/seqwho/seqwho.py -> build/lib/multiqc/modules/seqwho 2024-07-09T19:02:00,169 creating build/lib/multiqc/modules/seqyclean 2024-07-09T19:02:00,170 copying multiqc/modules/seqyclean/__init__.py -> build/lib/multiqc/modules/seqyclean 2024-07-09T19:02:00,172 copying multiqc/modules/seqyclean/seqyclean.py -> build/lib/multiqc/modules/seqyclean 2024-07-09T19:02:00,174 creating build/lib/multiqc/modules/sexdeterrmine 2024-07-09T19:02:00,175 copying multiqc/modules/sexdeterrmine/__init__.py -> build/lib/multiqc/modules/sexdeterrmine 2024-07-09T19:02:00,177 copying multiqc/modules/sexdeterrmine/sexdeterrmine.py -> build/lib/multiqc/modules/sexdeterrmine 2024-07-09T19:02:00,180 creating build/lib/multiqc/modules/sickle 2024-07-09T19:02:00,181 copying multiqc/modules/sickle/__init__.py -> build/lib/multiqc/modules/sickle 2024-07-09T19:02:00,183 copying multiqc/modules/sickle/sickle.py -> build/lib/multiqc/modules/sickle 2024-07-09T19:02:00,185 creating build/lib/multiqc/modules/skewer 2024-07-09T19:02:00,186 copying multiqc/modules/skewer/__init__.py -> build/lib/multiqc/modules/skewer 2024-07-09T19:02:00,188 copying multiqc/modules/skewer/skewer.py -> build/lib/multiqc/modules/skewer 2024-07-09T19:02:00,191 creating build/lib/multiqc/modules/slamdunk 2024-07-09T19:02:00,192 copying multiqc/modules/slamdunk/__init__.py -> build/lib/multiqc/modules/slamdunk 2024-07-09T19:02:00,194 copying multiqc/modules/slamdunk/slamdunk.py -> build/lib/multiqc/modules/slamdunk 2024-07-09T19:02:00,196 creating build/lib/multiqc/modules/snippy 2024-07-09T19:02:00,197 copying multiqc/modules/snippy/__init__.py -> build/lib/multiqc/modules/snippy 2024-07-09T19:02:00,199 copying multiqc/modules/snippy/snippy.py -> build/lib/multiqc/modules/snippy 2024-07-09T19:02:00,202 creating build/lib/multiqc/modules/snpeff 2024-07-09T19:02:00,203 copying multiqc/modules/snpeff/__init__.py -> build/lib/multiqc/modules/snpeff 2024-07-09T19:02:00,205 copying multiqc/modules/snpeff/snpeff.py -> build/lib/multiqc/modules/snpeff 2024-07-09T19:02:00,208 creating build/lib/multiqc/modules/snpsplit 2024-07-09T19:02:00,209 copying multiqc/modules/snpsplit/__init__.py -> build/lib/multiqc/modules/snpsplit 2024-07-09T19:02:00,211 copying multiqc/modules/snpsplit/snpsplit.py -> build/lib/multiqc/modules/snpsplit 2024-07-09T19:02:00,213 creating build/lib/multiqc/modules/somalier 2024-07-09T19:02:00,214 copying multiqc/modules/somalier/__init__.py -> build/lib/multiqc/modules/somalier 2024-07-09T19:02:00,217 copying multiqc/modules/somalier/somalier.py -> build/lib/multiqc/modules/somalier 2024-07-09T19:02:00,219 creating build/lib/multiqc/modules/sortmerna 2024-07-09T19:02:00,220 copying multiqc/modules/sortmerna/__init__.py -> build/lib/multiqc/modules/sortmerna 2024-07-09T19:02:00,222 copying multiqc/modules/sortmerna/sortmerna.py -> build/lib/multiqc/modules/sortmerna 2024-07-09T19:02:00,224 creating build/lib/multiqc/modules/sourmash 2024-07-09T19:02:00,225 copying multiqc/modules/sourmash/__init__.py -> build/lib/multiqc/modules/sourmash 2024-07-09T19:02:00,227 copying multiqc/modules/sourmash/compare.py -> build/lib/multiqc/modules/sourmash 2024-07-09T19:02:00,229 copying multiqc/modules/sourmash/gather.py -> build/lib/multiqc/modules/sourmash 2024-07-09T19:02:00,232 copying multiqc/modules/sourmash/sourmash.py -> build/lib/multiqc/modules/sourmash 2024-07-09T19:02:00,233 creating build/lib/multiqc/modules/spaceranger 2024-07-09T19:02:00,234 copying multiqc/modules/spaceranger/__init__.py -> build/lib/multiqc/modules/spaceranger 2024-07-09T19:02:00,237 copying multiqc/modules/spaceranger/_utils.py -> build/lib/multiqc/modules/spaceranger 2024-07-09T19:02:00,239 copying multiqc/modules/spaceranger/count.py -> build/lib/multiqc/modules/spaceranger 2024-07-09T19:02:00,242 copying multiqc/modules/spaceranger/spaceranger.py -> build/lib/multiqc/modules/spaceranger 2024-07-09T19:02:00,244 creating build/lib/multiqc/modules/stacks 2024-07-09T19:02:00,245 copying multiqc/modules/stacks/__init__.py -> build/lib/multiqc/modules/stacks 2024-07-09T19:02:00,247 copying multiqc/modules/stacks/stacks.py -> build/lib/multiqc/modules/stacks 2024-07-09T19:02:00,250 creating build/lib/multiqc/modules/star 2024-07-09T19:02:00,251 copying multiqc/modules/star/__init__.py -> build/lib/multiqc/modules/star 2024-07-09T19:02:00,253 copying multiqc/modules/star/star.py -> build/lib/multiqc/modules/star 2024-07-09T19:02:00,256 creating build/lib/multiqc/modules/supernova 2024-07-09T19:02:00,257 copying multiqc/modules/supernova/__init__.py -> build/lib/multiqc/modules/supernova 2024-07-09T19:02:00,259 copying multiqc/modules/supernova/supernova.py -> build/lib/multiqc/modules/supernova 2024-07-09T19:02:00,261 creating build/lib/multiqc/modules/theta2 2024-07-09T19:02:00,262 copying multiqc/modules/theta2/__init__.py -> build/lib/multiqc/modules/theta2 2024-07-09T19:02:00,264 copying multiqc/modules/theta2/theta2.py -> build/lib/multiqc/modules/theta2 2024-07-09T19:02:00,266 creating build/lib/multiqc/modules/tophat 2024-07-09T19:02:00,267 copying multiqc/modules/tophat/__init__.py -> build/lib/multiqc/modules/tophat 2024-07-09T19:02:00,269 copying multiqc/modules/tophat/tophat.py -> build/lib/multiqc/modules/tophat 2024-07-09T19:02:00,272 creating build/lib/multiqc/modules/trimmomatic 2024-07-09T19:02:00,273 copying multiqc/modules/trimmomatic/__init__.py -> build/lib/multiqc/modules/trimmomatic 2024-07-09T19:02:00,275 copying multiqc/modules/trimmomatic/trimmomatic.py -> build/lib/multiqc/modules/trimmomatic 2024-07-09T19:02:00,277 creating build/lib/multiqc/modules/truvari 2024-07-09T19:02:00,278 copying multiqc/modules/truvari/__init__.py -> build/lib/multiqc/modules/truvari 2024-07-09T19:02:00,280 copying multiqc/modules/truvari/bench.py -> build/lib/multiqc/modules/truvari 2024-07-09T19:02:00,283 copying multiqc/modules/truvari/truvari.py -> build/lib/multiqc/modules/truvari 2024-07-09T19:02:00,285 creating build/lib/multiqc/modules/umitools 2024-07-09T19:02:00,286 copying multiqc/modules/umitools/__init__.py -> build/lib/multiqc/modules/umitools 2024-07-09T19:02:00,288 copying multiqc/modules/umitools/umitools.py -> build/lib/multiqc/modules/umitools 2024-07-09T19:02:00,291 creating build/lib/multiqc/modules/varscan2 2024-07-09T19:02:00,292 copying multiqc/modules/varscan2/__init__.py -> build/lib/multiqc/modules/varscan2 2024-07-09T19:02:00,294 copying multiqc/modules/varscan2/varscan2.py -> build/lib/multiqc/modules/varscan2 2024-07-09T19:02:00,297 creating build/lib/multiqc/modules/vcftools 2024-07-09T19:02:00,298 copying multiqc/modules/vcftools/__init__.py -> build/lib/multiqc/modules/vcftools 2024-07-09T19:02:00,300 copying multiqc/modules/vcftools/relatedness2.py -> build/lib/multiqc/modules/vcftools 2024-07-09T19:02:00,301 copying multiqc/modules/vcftools/tstv_by_count.py -> build/lib/multiqc/modules/vcftools 2024-07-09T19:02:00,303 copying multiqc/modules/vcftools/tstv_by_qual.py -> build/lib/multiqc/modules/vcftools 2024-07-09T19:02:00,305 copying multiqc/modules/vcftools/tstv_summary.py -> build/lib/multiqc/modules/vcftools 2024-07-09T19:02:00,307 copying multiqc/modules/vcftools/vcftools.py -> build/lib/multiqc/modules/vcftools 2024-07-09T19:02:00,309 creating build/lib/multiqc/modules/vep 2024-07-09T19:02:00,310 copying multiqc/modules/vep/__init__.py -> build/lib/multiqc/modules/vep 2024-07-09T19:02:00,312 copying multiqc/modules/vep/vep.py -> build/lib/multiqc/modules/vep 2024-07-09T19:02:00,315 creating build/lib/multiqc/modules/verifybamid 2024-07-09T19:02:00,316 copying multiqc/modules/verifybamid/__init__.py -> build/lib/multiqc/modules/verifybamid 2024-07-09T19:02:00,318 copying multiqc/modules/verifybamid/verifybamid.py -> build/lib/multiqc/modules/verifybamid 2024-07-09T19:02:00,320 creating build/lib/multiqc/modules/whatshap 2024-07-09T19:02:00,321 copying multiqc/modules/whatshap/__init__.py -> build/lib/multiqc/modules/whatshap 2024-07-09T19:02:00,323 copying multiqc/modules/whatshap/whatshap.py -> build/lib/multiqc/modules/whatshap 2024-07-09T19:02:00,326 creating build/lib/multiqc/modules/xengsort 2024-07-09T19:02:00,327 copying multiqc/modules/xengsort/__init__.py -> build/lib/multiqc/modules/xengsort 2024-07-09T19:02:00,329 copying multiqc/modules/xengsort/xengsort.py -> build/lib/multiqc/modules/xengsort 2024-07-09T19:02:00,331 creating build/lib/multiqc/modules/xenome 2024-07-09T19:02:00,332 copying multiqc/modules/xenome/__init__.py -> build/lib/multiqc/modules/xenome 2024-07-09T19:02:00,334 copying multiqc/modules/xenome/xenome.py -> build/lib/multiqc/modules/xenome 2024-07-09T19:02:00,337 creating build/lib/multiqc/plots 2024-07-09T19:02:00,338 copying multiqc/plots/__init__.py -> build/lib/multiqc/plots 2024-07-09T19:02:00,340 copying multiqc/plots/bargraph.py -> build/lib/multiqc/plots 2024-07-09T19:02:00,342 copying multiqc/plots/box.py -> build/lib/multiqc/plots 2024-07-09T19:02:00,344 copying multiqc/plots/heatmap.py -> build/lib/multiqc/plots 2024-07-09T19:02:00,346 copying multiqc/plots/linegraph.py -> build/lib/multiqc/plots 2024-07-09T19:02:00,349 copying multiqc/plots/scatter.py -> build/lib/multiqc/plots 2024-07-09T19:02:00,351 copying multiqc/plots/table.py -> build/lib/multiqc/plots 2024-07-09T19:02:00,353 copying multiqc/plots/table_object.py -> build/lib/multiqc/plots 2024-07-09T19:02:00,356 copying multiqc/plots/violin.py -> build/lib/multiqc/plots 2024-07-09T19:02:00,358 creating build/lib/multiqc/plots/plotly 2024-07-09T19:02:00,359 copying multiqc/plots/plotly/__init__.py -> build/lib/multiqc/plots/plotly 2024-07-09T19:02:00,361 copying multiqc/plots/plotly/bar.py -> build/lib/multiqc/plots/plotly 2024-07-09T19:02:00,364 copying multiqc/plots/plotly/box.py -> build/lib/multiqc/plots/plotly 2024-07-09T19:02:00,366 copying multiqc/plots/plotly/heatmap.py -> build/lib/multiqc/plots/plotly 2024-07-09T19:02:00,369 copying multiqc/plots/plotly/line.py -> build/lib/multiqc/plots/plotly 2024-07-09T19:02:00,372 copying multiqc/plots/plotly/plot.py -> build/lib/multiqc/plots/plotly 2024-07-09T19:02:00,375 copying multiqc/plots/plotly/scatter.py -> build/lib/multiqc/plots/plotly 2024-07-09T19:02:00,377 copying multiqc/plots/plotly/table.py -> build/lib/multiqc/plots/plotly 2024-07-09T19:02:00,380 copying multiqc/plots/plotly/violin.py -> build/lib/multiqc/plots/plotly 2024-07-09T19:02:00,383 creating build/lib/multiqc/templates 2024-07-09T19:02:00,384 copying multiqc/templates/__init__.py -> build/lib/multiqc/templates 2024-07-09T19:02:00,386 creating build/lib/multiqc/templates/default 2024-07-09T19:02:00,387 copying multiqc/templates/default/__init__.py -> build/lib/multiqc/templates/default 2024-07-09T19:02:00,389 copying multiqc/templates/default/base.html -> build/lib/multiqc/templates/default 2024-07-09T19:02:00,391 copying multiqc/templates/default/content.html -> build/lib/multiqc/templates/default 2024-07-09T19:02:00,393 copying multiqc/templates/default/foot.html -> build/lib/multiqc/templates/default 2024-07-09T19:02:00,395 copying multiqc/templates/default/footer.html -> build/lib/multiqc/templates/default 2024-07-09T19:02:00,398 copying multiqc/templates/default/general_stats.html -> build/lib/multiqc/templates/default 2024-07-09T19:02:00,399 copying multiqc/templates/default/head.html -> build/lib/multiqc/templates/default 2024-07-09T19:02:00,401 copying multiqc/templates/default/header.html -> build/lib/multiqc/templates/default 2024-07-09T19:02:00,404 copying multiqc/templates/default/includes.html -> build/lib/multiqc/templates/default 2024-07-09T19:02:00,406 copying multiqc/templates/default/nav.html -> build/lib/multiqc/templates/default 2024-07-09T19:02:00,408 copying multiqc/templates/default/toolbox.html -> build/lib/multiqc/templates/default 2024-07-09T19:02:00,410 creating build/lib/multiqc/templates/default/assets 2024-07-09T19:02:00,411 creating build/lib/multiqc/templates/default/assets/css 2024-07-09T19:02:00,412 copying multiqc/templates/default/assets/css/bootstrap.min.css -> build/lib/multiqc/templates/default/assets/css 2024-07-09T19:02:00,417 copying multiqc/templates/default/assets/css/default_multiqc.css -> build/lib/multiqc/templates/default/assets/css 2024-07-09T19:02:00,419 copying multiqc/templates/default/assets/css/jquery.toast.css -> build/lib/multiqc/templates/default/assets/css 2024-07-09T19:02:00,422 creating build/lib/multiqc/templates/default/assets/fonts 2024-07-09T19:02:00,423 copying multiqc/templates/default/assets/fonts/glyphicons-halflings-regular.eot -> build/lib/multiqc/templates/default/assets/fonts 2024-07-09T19:02:00,425 copying multiqc/templates/default/assets/fonts/glyphicons-halflings-regular.svg -> build/lib/multiqc/templates/default/assets/fonts 2024-07-09T19:02:00,430 copying multiqc/templates/default/assets/fonts/glyphicons-halflings-regular.ttf -> build/lib/multiqc/templates/default/assets/fonts 2024-07-09T19:02:00,433 copying multiqc/templates/default/assets/fonts/glyphicons-halflings-regular.woff -> build/lib/multiqc/templates/default/assets/fonts 2024-07-09T19:02:00,436 copying multiqc/templates/default/assets/fonts/glyphicons-halflings-regular.woff2 -> build/lib/multiqc/templates/default/assets/fonts 2024-07-09T19:02:00,438 creating build/lib/multiqc/templates/default/assets/img 2024-07-09T19:02:00,439 copying multiqc/templates/default/assets/img/MultiQC_logo.png -> build/lib/multiqc/templates/default/assets/img 2024-07-09T19:02:00,442 copying multiqc/templates/default/assets/img/MultiQC_logo_dark.svg -> build/lib/multiqc/templates/default/assets/img 2024-07-09T19:02:00,444 copying multiqc/templates/default/assets/img/favicon-16x16.png -> build/lib/multiqc/templates/default/assets/img 2024-07-09T19:02:00,446 copying multiqc/templates/default/assets/img/favicon-32x32.png -> build/lib/multiqc/templates/default/assets/img 2024-07-09T19:02:00,448 copying multiqc/templates/default/assets/img/favicon-96x96.png -> build/lib/multiqc/templates/default/assets/img 2024-07-09T19:02:00,450 copying multiqc/templates/default/assets/img/seqera_logo.png -> build/lib/multiqc/templates/default/assets/img 2024-07-09T19:02:00,453 copying multiqc/templates/default/assets/img/seqera_logo_mono.png -> build/lib/multiqc/templates/default/assets/img 2024-07-09T19:02:00,455 creating build/lib/multiqc/templates/default/assets/js 2024-07-09T19:02:00,456 copying multiqc/templates/default/assets/js/decompress.js -> build/lib/multiqc/templates/default/assets/js 2024-07-09T19:02:00,458 copying multiqc/templates/default/assets/js/flat.js -> build/lib/multiqc/templates/default/assets/js 2024-07-09T19:02:00,460 copying multiqc/templates/default/assets/js/multiqc.js -> build/lib/multiqc/templates/default/assets/js 2024-07-09T19:02:00,461 copying multiqc/templates/default/assets/js/plotting.js -> build/lib/multiqc/templates/default/assets/js 2024-07-09T19:02:00,464 copying multiqc/templates/default/assets/js/render.js -> build/lib/multiqc/templates/default/assets/js 2024-07-09T19:02:00,466 copying multiqc/templates/default/assets/js/tables.js -> build/lib/multiqc/templates/default/assets/js 2024-07-09T19:02:00,469 copying multiqc/templates/default/assets/js/toolbox.js -> build/lib/multiqc/templates/default/assets/js 2024-07-09T19:02:00,472 creating build/lib/multiqc/templates/default/assets/js/packages 2024-07-09T19:02:00,472 copying multiqc/templates/default/assets/js/packages/FileSaver.min.js -> build/lib/multiqc/templates/default/assets/js/packages 2024-07-09T19:02:00,474 copying multiqc/templates/default/assets/js/packages/bootstrap.min.js -> build/lib/multiqc/templates/default/assets/js/packages 2024-07-09T19:02:00,477 copying multiqc/templates/default/assets/js/packages/jquery-3.1.1.min.js -> build/lib/multiqc/templates/default/assets/js/packages 2024-07-09T19:02:00,481 copying multiqc/templates/default/assets/js/packages/jquery-ui.min.js -> build/lib/multiqc/templates/default/assets/js/packages 2024-07-09T19:02:00,484 copying multiqc/templates/default/assets/js/packages/jquery.tablesorter.min.js -> build/lib/multiqc/templates/default/assets/js/packages 2024-07-09T19:02:00,488 copying multiqc/templates/default/assets/js/packages/jquery.toast.min.js -> build/lib/multiqc/templates/default/assets/js/packages 2024-07-09T19:02:00,490 copying multiqc/templates/default/assets/js/packages/jszip.min.js -> build/lib/multiqc/templates/default/assets/js/packages 2024-07-09T19:02:00,494 copying multiqc/templates/default/assets/js/packages/pako_inflate.min.js -> build/lib/multiqc/templates/default/assets/js/packages 2024-07-09T19:02:00,497 copying multiqc/templates/default/assets/js/packages/plotly-2.27.0.js -> build/lib/multiqc/templates/default/assets/js/packages 2024-07-09T19:02:00,624 copying multiqc/templates/default/assets/js/packages/plotly-2.27.0.min.js -> build/lib/multiqc/templates/default/assets/js/packages 2024-07-09T19:02:00,683 creating build/lib/multiqc/templates/default/assets/js/plots 2024-07-09T19:02:00,683 copying multiqc/templates/default/assets/js/plots/bar.js -> build/lib/multiqc/templates/default/assets/js/plots 2024-07-09T19:02:00,686 copying multiqc/templates/default/assets/js/plots/box.js -> build/lib/multiqc/templates/default/assets/js/plots 2024-07-09T19:02:00,688 copying multiqc/templates/default/assets/js/plots/heatmap.js -> build/lib/multiqc/templates/default/assets/js/plots 2024-07-09T19:02:00,690 copying multiqc/templates/default/assets/js/plots/line.js -> build/lib/multiqc/templates/default/assets/js/plots 2024-07-09T19:02:00,692 copying multiqc/templates/default/assets/js/plots/scatter.js -> build/lib/multiqc/templates/default/assets/js/plots 2024-07-09T19:02:00,694 copying multiqc/templates/default/assets/js/plots/violin.js -> build/lib/multiqc/templates/default/assets/js/plots 2024-07-09T19:02:00,697 creating build/lib/multiqc/templates/gathered 2024-07-09T19:02:00,698 copying multiqc/templates/gathered/__init__.py -> build/lib/multiqc/templates/gathered 2024-07-09T19:02:00,700 copying multiqc/templates/gathered/content.html -> build/lib/multiqc/templates/gathered 2024-07-09T19:02:00,702 copying multiqc/templates/gathered/nav.html -> build/lib/multiqc/templates/gathered 2024-07-09T19:02:00,704 creating build/lib/multiqc/templates/geo 2024-07-09T19:02:00,705 copying multiqc/templates/geo/__init__.py -> build/lib/multiqc/templates/geo 2024-07-09T19:02:00,707 copying multiqc/templates/geo/includes.html -> build/lib/multiqc/templates/geo 2024-07-09T19:02:00,710 creating build/lib/multiqc/templates/geo/assets 2024-07-09T19:02:00,710 creating build/lib/multiqc/templates/geo/assets/css 2024-07-09T19:02:00,711 copying multiqc/templates/geo/assets/css/bootstrap.min.css -> build/lib/multiqc/templates/geo/assets/css 2024-07-09T19:02:00,715 creating build/lib/multiqc/templates/geo/assets/img 2024-07-09T19:02:00,716 copying multiqc/templates/geo/assets/img/emailme.gif -> build/lib/multiqc/templates/geo/assets/img 2024-07-09T19:02:00,718 copying multiqc/templates/geo/assets/img/flames.gif -> build/lib/multiqc/templates/geo/assets/img 2024-07-09T19:02:00,721 copying multiqc/templates/geo/assets/img/glyphicons-halflings-white.png -> build/lib/multiqc/templates/geo/assets/img 2024-07-09T19:02:00,724 copying multiqc/templates/geo/assets/img/glyphicons-halflings.png -> build/lib/multiqc/templates/geo/assets/img 2024-07-09T19:02:00,726 copying multiqc/templates/geo/assets/img/hot.gif -> build/lib/multiqc/templates/geo/assets/img 2024-07-09T19:02:00,729 copying multiqc/templates/geo/assets/img/mchammer.gif -> build/lib/multiqc/templates/geo/assets/img 2024-07-09T19:02:00,733 copying multiqc/templates/geo/assets/img/microfab.gif -> build/lib/multiqc/templates/geo/assets/img 2024-07-09T19:02:00,735 copying multiqc/templates/geo/assets/img/new.gif -> build/lib/multiqc/templates/geo/assets/img 2024-07-09T19:02:00,737 copying multiqc/templates/geo/assets/img/new2.gif -> build/lib/multiqc/templates/geo/assets/img 2024-07-09T19:02:00,740 copying multiqc/templates/geo/assets/img/progress.gif -> build/lib/multiqc/templates/geo/assets/img 2024-07-09T19:02:00,742 copying multiqc/templates/geo/assets/img/rainbow.gif -> build/lib/multiqc/templates/geo/assets/img 2024-07-09T19:02:00,744 copying multiqc/templates/geo/assets/img/stars.gif -> build/lib/multiqc/templates/geo/assets/img 2024-07-09T19:02:00,747 creating build/lib/multiqc/templates/sections 2024-07-09T19:02:00,747 copying multiqc/templates/sections/__init__.py -> build/lib/multiqc/templates/sections 2024-07-09T19:02:00,750 copying multiqc/templates/sections/content.html -> build/lib/multiqc/templates/sections 2024-07-09T19:02:00,751 creating build/lib/multiqc/templates/simple 2024-07-09T19:02:00,752 copying multiqc/templates/simple/__init__.py -> build/lib/multiqc/templates/simple 2024-07-09T19:02:00,754 copying multiqc/templates/simple/foot.html -> build/lib/multiqc/templates/simple 2024-07-09T19:02:00,756 copying multiqc/templates/simple/header.html -> build/lib/multiqc/templates/simple 2024-07-09T19:02:00,758 copying multiqc/templates/simple/includes.html -> build/lib/multiqc/templates/simple 2024-07-09T19:02:00,760 copying multiqc/templates/simple/nav.html -> build/lib/multiqc/templates/simple 2024-07-09T19:02:00,762 copying multiqc/templates/simple/toolbox.html -> build/lib/multiqc/templates/simple 2024-07-09T19:02:00,764 creating build/lib/multiqc/utils 2024-07-09T19:02:00,765 copying multiqc/utils/__init__.py -> build/lib/multiqc/utils 2024-07-09T19:02:00,767 copying multiqc/utils/config.py -> build/lib/multiqc/utils 2024-07-09T19:02:00,769 copying multiqc/utils/megaqc.py -> build/lib/multiqc/utils 2024-07-09T19:02:00,771 copying multiqc/utils/mqc_colour.py -> build/lib/multiqc/utils 2024-07-09T19:02:00,773 copying multiqc/utils/report.py -> build/lib/multiqc/utils 2024-07-09T19:02:00,775 copying multiqc/utils/testing.py -> build/lib/multiqc/utils 2024-07-09T19:02:00,777 copying multiqc/utils/util_functions.py -> build/lib/multiqc/utils 2024-07-09T19:02:00,787 installing to build/bdist.linux-armv7l/wheel 2024-07-09T19:02:00,787 running install 2024-07-09T19:02:00,811 running install_lib 2024-07-09T19:02:00,815 creating build/bdist.linux-armv7l 2024-07-09T19:02:00,816 creating build/bdist.linux-armv7l/wheel 2024-07-09T19:02:00,817 creating build/bdist.linux-armv7l/wheel/multiqc 2024-07-09T19:02:00,821 creating build/bdist.linux-armv7l/wheel/multiqc/modules 2024-07-09T19:02:00,823 creating build/bdist.linux-armv7l/wheel/multiqc/modules/flexbar 2024-07-09T19:02:00,824 copying build/lib/multiqc/modules/flexbar/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/flexbar 2024-07-09T19:02:00,826 copying build/lib/multiqc/modules/flexbar/flexbar.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/flexbar 2024-07-09T19:02:00,828 creating build/bdist.linux-armv7l/wheel/multiqc/modules/qc3C 2024-07-09T19:02:00,829 copying build/lib/multiqc/modules/qc3C/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/qc3C 2024-07-09T19:02:00,831 copying build/lib/multiqc/modules/qc3C/qc3C.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/qc3C 2024-07-09T19:02:00,834 creating build/bdist.linux-armv7l/wheel/multiqc/modules/mosdepth 2024-07-09T19:02:00,835 copying build/lib/multiqc/modules/mosdepth/mosdepth.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/mosdepth 2024-07-09T19:02:00,838 copying build/lib/multiqc/modules/mosdepth/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/mosdepth 2024-07-09T19:02:00,839 creating build/bdist.linux-armv7l/wheel/multiqc/modules/glimpse 2024-07-09T19:02:00,840 copying build/lib/multiqc/modules/glimpse/err_grp.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/glimpse 2024-07-09T19:02:00,843 copying build/lib/multiqc/modules/glimpse/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/glimpse 2024-07-09T19:02:00,844 copying build/lib/multiqc/modules/glimpse/err_spl.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/glimpse 2024-07-09T19:02:00,846 copying build/lib/multiqc/modules/glimpse/glimpse.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/glimpse 2024-07-09T19:02:00,848 creating build/bdist.linux-armv7l/wheel/multiqc/modules/pycoqc 2024-07-09T19:02:00,849 copying build/lib/multiqc/modules/pycoqc/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/pycoqc 2024-07-09T19:02:00,851 copying build/lib/multiqc/modules/pycoqc/pycoqc.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/pycoqc 2024-07-09T19:02:00,854 creating build/bdist.linux-armv7l/wheel/multiqc/modules/snpsplit 2024-07-09T19:02:00,855 copying build/lib/multiqc/modules/snpsplit/snpsplit.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/snpsplit 2024-07-09T19:02:00,858 copying build/lib/multiqc/modules/snpsplit/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/snpsplit 2024-07-09T19:02:00,860 creating build/bdist.linux-armv7l/wheel/multiqc/modules/htseq 2024-07-09T19:02:00,861 copying build/lib/multiqc/modules/htseq/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/htseq 2024-07-09T19:02:00,863 copying build/lib/multiqc/modules/htseq/htseq.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/htseq 2024-07-09T19:02:00,865 creating build/bdist.linux-armv7l/wheel/multiqc/modules/hicpro 2024-07-09T19:02:00,866 copying build/lib/multiqc/modules/hicpro/hicpro.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/hicpro 2024-07-09T19:02:00,869 copying build/lib/multiqc/modules/hicpro/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/hicpro 2024-07-09T19:02:00,871 creating build/bdist.linux-armv7l/wheel/multiqc/modules/trimmomatic 2024-07-09T19:02:00,872 copying build/lib/multiqc/modules/trimmomatic/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/trimmomatic 2024-07-09T19:02:00,874 copying build/lib/multiqc/modules/trimmomatic/trimmomatic.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/trimmomatic 2024-07-09T19:02:00,876 creating build/bdist.linux-armv7l/wheel/multiqc/modules/dedup 2024-07-09T19:02:00,877 copying build/lib/multiqc/modules/dedup/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/dedup 2024-07-09T19:02:00,879 copying build/lib/multiqc/modules/dedup/dedup.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/dedup 2024-07-09T19:02:00,882 creating build/bdist.linux-armv7l/wheel/multiqc/modules/xengsort 2024-07-09T19:02:00,883 copying build/lib/multiqc/modules/xengsort/xengsort.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/xengsort 2024-07-09T19:02:00,885 copying build/lib/multiqc/modules/xengsort/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/xengsort 2024-07-09T19:02:00,887 creating build/bdist.linux-armv7l/wheel/multiqc/modules/prinseqplusplus 2024-07-09T19:02:00,888 copying build/lib/multiqc/modules/prinseqplusplus/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/prinseqplusplus 2024-07-09T19:02:00,890 copying build/lib/multiqc/modules/prinseqplusplus/prinseqplusplus.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/prinseqplusplus 2024-07-09T19:02:00,892 creating build/bdist.linux-armv7l/wheel/multiqc/modules/eigenstratdatabasetools 2024-07-09T19:02:00,893 copying build/lib/multiqc/modules/eigenstratdatabasetools/eigenstratdatabasetools.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/eigenstratdatabasetools 2024-07-09T19:02:00,895 copying build/lib/multiqc/modules/eigenstratdatabasetools/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/eigenstratdatabasetools 2024-07-09T19:02:00,897 creating build/bdist.linux-armv7l/wheel/multiqc/modules/hicup 2024-07-09T19:02:00,898 copying build/lib/multiqc/modules/hicup/hicup.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/hicup 2024-07-09T19:02:00,900 copying build/lib/multiqc/modules/hicup/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/hicup 2024-07-09T19:02:00,902 creating build/bdist.linux-armv7l/wheel/multiqc/modules/megahit 2024-07-09T19:02:00,903 copying build/lib/multiqc/modules/megahit/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/megahit 2024-07-09T19:02:00,905 copying build/lib/multiqc/modules/megahit/megahit.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/megahit 2024-07-09T19:02:00,908 creating build/bdist.linux-armv7l/wheel/multiqc/modules/hostile 2024-07-09T19:02:00,909 copying build/lib/multiqc/modules/hostile/hostile.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/hostile 2024-07-09T19:02:00,911 copying build/lib/multiqc/modules/hostile/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/hostile 2024-07-09T19:02:00,913 creating build/bdist.linux-armv7l/wheel/multiqc/modules/isoseq 2024-07-09T19:02:00,914 copying build/lib/multiqc/modules/isoseq/isoseq.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/isoseq 2024-07-09T19:02:00,916 copying build/lib/multiqc/modules/isoseq/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/isoseq 2024-07-09T19:02:00,918 creating build/bdist.linux-armv7l/wheel/multiqc/modules/diamond 2024-07-09T19:02:00,919 copying build/lib/multiqc/modules/diamond/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/diamond 2024-07-09T19:02:00,921 copying build/lib/multiqc/modules/diamond/diamond.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/diamond 2024-07-09T19:02:00,923 creating build/bdist.linux-armv7l/wheel/multiqc/modules/spaceranger 2024-07-09T19:02:00,924 copying build/lib/multiqc/modules/spaceranger/count.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/spaceranger 2024-07-09T19:02:00,927 copying build/lib/multiqc/modules/spaceranger/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/spaceranger 2024-07-09T19:02:00,929 copying build/lib/multiqc/modules/spaceranger/spaceranger.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/spaceranger 2024-07-09T19:02:00,930 copying build/lib/multiqc/modules/spaceranger/_utils.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/spaceranger 2024-07-09T19:02:00,932 creating build/bdist.linux-armv7l/wheel/multiqc/modules/umitools 2024-07-09T19:02:00,933 copying build/lib/multiqc/modules/umitools/umitools.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/umitools 2024-07-09T19:02:00,936 copying build/lib/multiqc/modules/umitools/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/umitools 2024-07-09T19:02:00,938 creating build/bdist.linux-armv7l/wheel/multiqc/modules/bcl2fastq 2024-07-09T19:02:00,939 copying build/lib/multiqc/modules/bcl2fastq/bcl2fastq.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/bcl2fastq 2024-07-09T19:02:00,942 copying build/lib/multiqc/modules/bcl2fastq/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/bcl2fastq 2024-07-09T19:02:00,944 creating build/bdist.linux-armv7l/wheel/multiqc/modules/happy 2024-07-09T19:02:00,945 copying build/lib/multiqc/modules/happy/happy.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/happy 2024-07-09T19:02:00,948 copying build/lib/multiqc/modules/happy/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/happy 2024-07-09T19:02:00,950 creating build/bdist.linux-armv7l/wheel/multiqc/modules/rsem 2024-07-09T19:02:00,951 copying build/lib/multiqc/modules/rsem/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/rsem 2024-07-09T19:02:00,952 copying build/lib/multiqc/modules/rsem/rsem.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/rsem 2024-07-09T19:02:00,955 creating build/bdist.linux-armv7l/wheel/multiqc/modules/librarian 2024-07-09T19:02:00,956 copying build/lib/multiqc/modules/librarian/librarian.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/librarian 2024-07-09T19:02:00,958 copying build/lib/multiqc/modules/librarian/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/librarian 2024-07-09T19:02:00,960 creating build/bdist.linux-armv7l/wheel/multiqc/modules/pbmarkdup 2024-07-09T19:02:00,961 copying build/lib/multiqc/modules/pbmarkdup/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/pbmarkdup 2024-07-09T19:02:00,963 copying build/lib/multiqc/modules/pbmarkdup/pbmarkdup.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/pbmarkdup 2024-07-09T19:02:00,965 creating build/bdist.linux-armv7l/wheel/multiqc/modules/ccs 2024-07-09T19:02:00,966 copying build/lib/multiqc/modules/ccs/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/ccs 2024-07-09T19:02:00,968 copying build/lib/multiqc/modules/ccs/ccs.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/ccs 2024-07-09T19:02:00,971 creating build/bdist.linux-armv7l/wheel/multiqc/modules/ccs/tests 2024-07-09T19:02:00,971 copying build/lib/multiqc/modules/ccs/tests/test_ccs.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/ccs/tests 2024-07-09T19:02:00,973 copying build/lib/multiqc/modules/ccs/tests/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/ccs/tests 2024-07-09T19:02:00,975 creating build/bdist.linux-armv7l/wheel/multiqc/modules/mtnucratio 2024-07-09T19:02:00,976 copying build/lib/multiqc/modules/mtnucratio/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/mtnucratio 2024-07-09T19:02:00,978 copying build/lib/multiqc/modules/mtnucratio/mtnucratio.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/mtnucratio 2024-07-09T19:02:00,980 creating build/bdist.linux-armv7l/wheel/multiqc/modules/clusterflow 2024-07-09T19:02:00,981 copying build/lib/multiqc/modules/clusterflow/clusterflow.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/clusterflow 2024-07-09T19:02:00,984 copying build/lib/multiqc/modules/clusterflow/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/clusterflow 2024-07-09T19:02:00,986 creating build/bdist.linux-armv7l/wheel/multiqc/modules/qorts 2024-07-09T19:02:00,987 copying build/lib/multiqc/modules/qorts/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/qorts 2024-07-09T19:02:00,989 copying build/lib/multiqc/modules/qorts/qorts.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/qorts 2024-07-09T19:02:00,992 creating build/bdist.linux-armv7l/wheel/multiqc/modules/macs2 2024-07-09T19:02:00,993 copying build/lib/multiqc/modules/macs2/macs2.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/macs2 2024-07-09T19:02:00,995 copying build/lib/multiqc/modules/macs2/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/macs2 2024-07-09T19:02:00,997 creating build/bdist.linux-armv7l/wheel/multiqc/modules/seqwho 2024-07-09T19:02:00,998 copying build/lib/multiqc/modules/seqwho/seqwho.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/seqwho 2024-07-09T19:02:01,001 copying build/lib/multiqc/modules/seqwho/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/seqwho 2024-07-09T19:02:01,003 creating build/bdist.linux-armv7l/wheel/multiqc/modules/rna_seqc 2024-07-09T19:02:01,004 copying build/lib/multiqc/modules/rna_seqc/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/rna_seqc 2024-07-09T19:02:01,006 copying build/lib/multiqc/modules/rna_seqc/rna_seqc.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/rna_seqc 2024-07-09T19:02:01,008 creating build/bdist.linux-armv7l/wheel/multiqc/modules/bismark 2024-07-09T19:02:01,009 copying build/lib/multiqc/modules/bismark/bismark.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/bismark 2024-07-09T19:02:01,012 copying build/lib/multiqc/modules/bismark/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/bismark 2024-07-09T19:02:01,014 creating build/bdist.linux-armv7l/wheel/multiqc/modules/vcftools 2024-07-09T19:02:01,015 copying build/lib/multiqc/modules/vcftools/tstv_by_count.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/vcftools 2024-07-09T19:02:01,017 copying build/lib/multiqc/modules/vcftools/relatedness2.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/vcftools 2024-07-09T19:02:01,018 copying build/lib/multiqc/modules/vcftools/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/vcftools 2024-07-09T19:02:01,020 copying build/lib/multiqc/modules/vcftools/vcftools.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/vcftools 2024-07-09T19:02:01,022 copying build/lib/multiqc/modules/vcftools/tstv_summary.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/vcftools 2024-07-09T19:02:01,024 copying build/lib/multiqc/modules/vcftools/tstv_by_qual.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/vcftools 2024-07-09T19:02:01,026 copying build/lib/multiqc/modules/software_versions.py -> build/bdist.linux-armv7l/wheel/multiqc/modules 2024-07-09T19:02:01,028 creating build/bdist.linux-armv7l/wheel/multiqc/modules/humid 2024-07-09T19:02:01,029 copying build/lib/multiqc/modules/humid/humid.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/humid 2024-07-09T19:02:01,031 copying build/lib/multiqc/modules/humid/clusters.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/humid 2024-07-09T19:02:01,033 copying build/lib/multiqc/modules/humid/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/humid 2024-07-09T19:02:01,034 copying build/lib/multiqc/modules/humid/neighbours.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/humid 2024-07-09T19:02:01,036 copying build/lib/multiqc/modules/humid/counts.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/humid 2024-07-09T19:02:01,038 copying build/lib/multiqc/modules/humid/stats.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/humid 2024-07-09T19:02:01,041 creating build/bdist.linux-armv7l/wheel/multiqc/modules/jellyfish 2024-07-09T19:02:01,042 copying build/lib/multiqc/modules/jellyfish/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/jellyfish 2024-07-09T19:02:01,044 copying build/lib/multiqc/modules/jellyfish/jellyfish.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/jellyfish 2024-07-09T19:02:01,046 creating build/bdist.linux-armv7l/wheel/multiqc/modules/sargasso 2024-07-09T19:02:01,047 copying build/lib/multiqc/modules/sargasso/sargasso.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/sargasso 2024-07-09T19:02:01,050 copying build/lib/multiqc/modules/sargasso/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/sargasso 2024-07-09T19:02:01,052 creating build/bdist.linux-armv7l/wheel/multiqc/modules/star 2024-07-09T19:02:01,053 copying build/lib/multiqc/modules/star/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/star 2024-07-09T19:02:01,055 copying build/lib/multiqc/modules/star/star.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/star 2024-07-09T19:02:01,058 creating build/bdist.linux-armv7l/wheel/multiqc/modules/xenome 2024-07-09T19:02:01,059 copying build/lib/multiqc/modules/xenome/xenome.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/xenome 2024-07-09T19:02:01,062 copying build/lib/multiqc/modules/xenome/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/xenome 2024-07-09T19:02:01,064 creating build/bdist.linux-armv7l/wheel/multiqc/modules/samtools 2024-07-09T19:02:01,065 copying build/lib/multiqc/modules/samtools/rmdup.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/samtools 2024-07-09T19:02:01,067 copying build/lib/multiqc/modules/samtools/flagstat.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/samtools 2024-07-09T19:02:01,069 copying build/lib/multiqc/modules/samtools/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/samtools 2024-07-09T19:02:01,071 copying build/lib/multiqc/modules/samtools/idxstats.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/samtools 2024-07-09T19:02:01,073 creating build/bdist.linux-armv7l/wheel/multiqc/modules/samtools/tests 2024-07-09T19:02:01,074 copying build/lib/multiqc/modules/samtools/tests/test_flagstat.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/samtools/tests 2024-07-09T19:02:01,076 copying build/lib/multiqc/modules/samtools/tests/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/samtools/tests 2024-07-09T19:02:01,077 copying build/lib/multiqc/modules/samtools/samtools.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/samtools 2024-07-09T19:02:01,079 copying build/lib/multiqc/modules/samtools/stats.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/samtools 2024-07-09T19:02:01,081 copying build/lib/multiqc/modules/samtools/markdup.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/samtools 2024-07-09T19:02:01,083 copying build/lib/multiqc/modules/samtools/coverage.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/samtools 2024-07-09T19:02:01,086 creating build/bdist.linux-armv7l/wheel/multiqc/modules/custom_content 2024-07-09T19:02:01,087 copying build/lib/multiqc/modules/custom_content/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/custom_content 2024-07-09T19:02:01,089 copying build/lib/multiqc/modules/custom_content/custom_content.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/custom_content 2024-07-09T19:02:01,092 creating build/bdist.linux-armv7l/wheel/multiqc/modules/rockhopper 2024-07-09T19:02:01,093 copying build/lib/multiqc/modules/rockhopper/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/rockhopper 2024-07-09T19:02:01,095 copying build/lib/multiqc/modules/rockhopper/rockhopper.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/rockhopper 2024-07-09T19:02:01,097 creating build/bdist.linux-armv7l/wheel/multiqc/modules/disambiguate 2024-07-09T19:02:01,098 copying build/lib/multiqc/modules/disambiguate/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/disambiguate 2024-07-09T19:02:01,100 copying build/lib/multiqc/modules/disambiguate/disambiguate.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/disambiguate 2024-07-09T19:02:01,102 creating build/bdist.linux-armv7l/wheel/multiqc/modules/bracken 2024-07-09T19:02:01,103 copying build/lib/multiqc/modules/bracken/bracken.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/bracken 2024-07-09T19:02:01,105 copying build/lib/multiqc/modules/bracken/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/bracken 2024-07-09T19:02:01,107 creating build/bdist.linux-armv7l/wheel/multiqc/modules/leehom 2024-07-09T19:02:01,109 copying build/lib/multiqc/modules/leehom/leehom.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/leehom 2024-07-09T19:02:01,111 copying build/lib/multiqc/modules/leehom/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/leehom 2024-07-09T19:02:01,113 creating build/bdist.linux-armv7l/wheel/multiqc/modules/busco 2024-07-09T19:02:01,114 copying build/lib/multiqc/modules/busco/busco.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/busco 2024-07-09T19:02:01,116 copying build/lib/multiqc/modules/busco/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/busco 2024-07-09T19:02:01,118 creating build/bdist.linux-armv7l/wheel/multiqc/modules/pangolin 2024-07-09T19:02:01,119 copying build/lib/multiqc/modules/pangolin/pangolin.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/pangolin 2024-07-09T19:02:01,122 copying build/lib/multiqc/modules/pangolin/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/pangolin 2024-07-09T19:02:01,125 creating build/bdist.linux-armv7l/wheel/multiqc/modules/dragen 2024-07-09T19:02:01,126 copying build/lib/multiqc/modules/dragen/trimmer_metrics.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/dragen 2024-07-09T19:02:01,127 copying build/lib/multiqc/modules/dragen/coverage_metrics.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/dragen 2024-07-09T19:02:01,131 copying build/lib/multiqc/modules/dragen/utils.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/dragen 2024-07-09T19:02:01,133 copying build/lib/multiqc/modules/dragen/ploidy_estimation_metrics.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/dragen 2024-07-09T19:02:01,135 copying build/lib/multiqc/modules/dragen/dragen_gc_metrics.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/dragen 2024-07-09T19:02:01,137 copying build/lib/multiqc/modules/dragen/rna_quant_metrics.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/dragen 2024-07-09T19:02:01,139 copying build/lib/multiqc/modules/dragen/rna_transcript_cov.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/dragen 2024-07-09T19:02:01,140 copying build/lib/multiqc/modules/dragen/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/dragen 2024-07-09T19:02:01,142 copying build/lib/multiqc/modules/dragen/fragment_length.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/dragen 2024-07-09T19:02:01,144 copying build/lib/multiqc/modules/dragen/dragen.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/dragen 2024-07-09T19:02:01,146 copying build/lib/multiqc/modules/dragen/mapping_metrics.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/dragen 2024-07-09T19:02:01,149 creating build/bdist.linux-armv7l/wheel/multiqc/modules/dragen/tests 2024-07-09T19:02:01,150 copying build/lib/multiqc/modules/dragen/tests/test_dragen.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/dragen/tests 2024-07-09T19:02:01,152 copying build/lib/multiqc/modules/dragen/tests/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/dragen/tests 2024-07-09T19:02:01,153 copying build/lib/multiqc/modules/dragen/vc_metrics.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/dragen 2024-07-09T19:02:01,156 copying build/lib/multiqc/modules/dragen/overall_mean_cov.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/dragen 2024-07-09T19:02:01,158 copying build/lib/multiqc/modules/dragen/sc_atac_metrics.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/dragen 2024-07-09T19:02:01,160 copying build/lib/multiqc/modules/dragen/coverage_per_contig.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/dragen 2024-07-09T19:02:01,162 copying build/lib/multiqc/modules/dragen/time_metrics.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/dragen 2024-07-09T19:02:01,163 copying build/lib/multiqc/modules/dragen/sc_rna_metrics.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/dragen 2024-07-09T19:02:01,165 copying build/lib/multiqc/modules/dragen/coverage_hist.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/dragen 2024-07-09T19:02:01,168 creating build/bdist.linux-armv7l/wheel/multiqc/modules/sortmerna 2024-07-09T19:02:01,169 copying build/lib/multiqc/modules/sortmerna/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/sortmerna 2024-07-09T19:02:01,171 copying build/lib/multiqc/modules/sortmerna/sortmerna.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/sortmerna 2024-07-09T19:02:01,173 creating build/bdist.linux-armv7l/wheel/multiqc/modules/longranger 2024-07-09T19:02:01,174 copying build/lib/multiqc/modules/longranger/longranger.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/longranger 2024-07-09T19:02:01,177 copying build/lib/multiqc/modules/longranger/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/longranger 2024-07-09T19:02:01,179 creating build/bdist.linux-armv7l/wheel/multiqc/modules/hops 2024-07-09T19:02:01,180 copying build/lib/multiqc/modules/hops/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/hops 2024-07-09T19:02:01,182 copying build/lib/multiqc/modules/hops/hops.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/hops 2024-07-09T19:02:01,184 creating build/bdist.linux-armv7l/wheel/multiqc/modules/dragen_fastqc 2024-07-09T19:02:01,185 copying build/lib/multiqc/modules/dragen_fastqc/content_metrics.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/dragen_fastqc 2024-07-09T19:02:01,188 copying build/lib/multiqc/modules/dragen_fastqc/gc_metrics.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/dragen_fastqc 2024-07-09T19:02:01,190 copying build/lib/multiqc/modules/dragen_fastqc/base_metrics.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/dragen_fastqc 2024-07-09T19:02:01,192 creating build/bdist.linux-armv7l/wheel/multiqc/modules/dragen_fastqc/assets 2024-07-09T19:02:01,193 creating build/bdist.linux-armv7l/wheel/multiqc/modules/dragen_fastqc/assets/js 2024-07-09T19:02:01,194 copying build/lib/multiqc/modules/dragen_fastqc/assets/js/multiqc_dragen_fastqc.js -> build/bdist.linux-armv7l/wheel/multiqc/modules/dragen_fastqc/assets/js 2024-07-09T19:02:01,197 copying build/lib/multiqc/modules/dragen_fastqc/util.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/dragen_fastqc 2024-07-09T19:02:01,199 copying build/lib/multiqc/modules/dragen_fastqc/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/dragen_fastqc 2024-07-09T19:02:01,200 copying build/lib/multiqc/modules/dragen_fastqc/dragen_fastqc.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/dragen_fastqc 2024-07-09T19:02:01,202 copying build/lib/multiqc/modules/dragen_fastqc/read_metrics.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/dragen_fastqc 2024-07-09T19:02:01,205 creating build/bdist.linux-armv7l/wheel/multiqc/modules/preseq 2024-07-09T19:02:01,206 copying build/lib/multiqc/modules/preseq/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/preseq 2024-07-09T19:02:01,208 copying build/lib/multiqc/modules/preseq/preseq.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/preseq 2024-07-09T19:02:01,210 creating build/bdist.linux-armv7l/wheel/multiqc/modules/slamdunk 2024-07-09T19:02:01,211 copying build/lib/multiqc/modules/slamdunk/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/slamdunk 2024-07-09T19:02:01,213 copying build/lib/multiqc/modules/slamdunk/slamdunk.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/slamdunk 2024-07-09T19:02:01,216 creating build/bdist.linux-armv7l/wheel/multiqc/modules/bclconvert 2024-07-09T19:02:01,217 copying build/lib/multiqc/modules/bclconvert/bclconvert.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/bclconvert 2024-07-09T19:02:01,220 copying build/lib/multiqc/modules/bclconvert/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/bclconvert 2024-07-09T19:02:01,222 creating build/bdist.linux-armv7l/wheel/multiqc/modules/snpeff 2024-07-09T19:02:01,223 copying build/lib/multiqc/modules/snpeff/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/snpeff 2024-07-09T19:02:01,225 copying build/lib/multiqc/modules/snpeff/snpeff.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/snpeff 2024-07-09T19:02:01,227 creating build/bdist.linux-armv7l/wheel/multiqc/modules/bamtools 2024-07-09T19:02:01,229 copying build/lib/multiqc/modules/bamtools/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/bamtools 2024-07-09T19:02:01,231 copying build/lib/multiqc/modules/bamtools/bamtools.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/bamtools 2024-07-09T19:02:01,232 copying build/lib/multiqc/modules/bamtools/stats.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/bamtools 2024-07-09T19:02:01,235 creating build/bdist.linux-armv7l/wheel/multiqc/modules/hisat2 2024-07-09T19:02:01,236 copying build/lib/multiqc/modules/hisat2/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/hisat2 2024-07-09T19:02:01,238 copying build/lib/multiqc/modules/hisat2/hisat2.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/hisat2 2024-07-09T19:02:01,240 creating build/bdist.linux-armv7l/wheel/multiqc/modules/sambamba 2024-07-09T19:02:01,241 copying build/lib/multiqc/modules/sambamba/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/sambamba 2024-07-09T19:02:01,243 copying build/lib/multiqc/modules/sambamba/sambamba.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/sambamba 2024-07-09T19:02:01,245 copying build/lib/multiqc/modules/sambamba/markdup.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/sambamba 2024-07-09T19:02:01,247 creating build/bdist.linux-armv7l/wheel/multiqc/modules/clipandmerge 2024-07-09T19:02:01,248 copying build/lib/multiqc/modules/clipandmerge/clipandmerge.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/clipandmerge 2024-07-09T19:02:01,250 copying build/lib/multiqc/modules/clipandmerge/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/clipandmerge 2024-07-09T19:02:01,253 creating build/bdist.linux-armv7l/wheel/multiqc/modules/picard 2024-07-09T19:02:01,254 copying build/lib/multiqc/modules/picard/QualityByCycleMetrics.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/picard 2024-07-09T19:02:01,256 copying build/lib/multiqc/modules/picard/QualityYieldMetrics.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/picard 2024-07-09T19:02:01,258 copying build/lib/multiqc/modules/picard/QualityScoreDistributionMetrics.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/picard 2024-07-09T19:02:01,260 copying build/lib/multiqc/modules/picard/picard.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/picard 2024-07-09T19:02:01,262 copying build/lib/multiqc/modules/picard/GcBiasMetrics.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/picard 2024-07-09T19:02:01,265 copying build/lib/multiqc/modules/picard/WgsMetrics.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/picard 2024-07-09T19:02:01,268 copying build/lib/multiqc/modules/picard/IlluminaLaneMetrics.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/picard 2024-07-09T19:02:01,270 copying build/lib/multiqc/modules/picard/ExtractIlluminaBarcodes.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/picard 2024-07-09T19:02:01,273 copying build/lib/multiqc/modules/picard/BaseDistributionByCycleMetrics.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/picard 2024-07-09T19:02:01,275 copying build/lib/multiqc/modules/picard/CrosscheckFingerprints.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/picard 2024-07-09T19:02:01,278 copying build/lib/multiqc/modules/picard/MarkIlluminaAdapters.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/picard 2024-07-09T19:02:01,280 copying build/lib/multiqc/modules/picard/util.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/picard 2024-07-09T19:02:01,283 copying build/lib/multiqc/modules/picard/VariantCallingMetrics.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/picard 2024-07-09T19:02:01,286 copying build/lib/multiqc/modules/picard/InsertSizeMetrics.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/picard 2024-07-09T19:02:01,288 copying build/lib/multiqc/modules/picard/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/picard 2024-07-09T19:02:01,291 copying build/lib/multiqc/modules/picard/IlluminaBasecallingMetrics.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/picard 2024-07-09T19:02:01,293 copying build/lib/multiqc/modules/picard/MarkDuplicates.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/picard 2024-07-09T19:02:01,297 creating build/bdist.linux-armv7l/wheel/multiqc/modules/picard/tests 2024-07-09T19:02:01,298 copying build/lib/multiqc/modules/picard/tests/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/picard/tests 2024-07-09T19:02:01,300 copying build/lib/multiqc/modules/picard/tests/test_picard.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/picard/tests 2024-07-09T19:02:01,302 copying build/lib/multiqc/modules/picard/OxoGMetrics.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/picard 2024-07-09T19:02:01,304 copying build/lib/multiqc/modules/picard/ValidateSamFile.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/picard 2024-07-09T19:02:01,307 copying build/lib/multiqc/modules/picard/AlignmentSummaryMetrics.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/picard 2024-07-09T19:02:01,310 copying build/lib/multiqc/modules/picard/HsMetrics.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/picard 2024-07-09T19:02:01,313 copying build/lib/multiqc/modules/picard/RrbsSummaryMetrics.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/picard 2024-07-09T19:02:01,315 copying build/lib/multiqc/modules/picard/RnaSeqMetrics.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/picard 2024-07-09T19:02:01,318 copying build/lib/multiqc/modules/picard/TargetedPcrMetrics.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/picard 2024-07-09T19:02:01,321 creating build/bdist.linux-armv7l/wheel/multiqc/modules/gatk 2024-07-09T19:02:01,322 copying build/lib/multiqc/modules/gatk/gatk.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/gatk 2024-07-09T19:02:01,324 copying build/lib/multiqc/modules/gatk/base_recalibrator.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/gatk 2024-07-09T19:02:01,327 copying build/lib/multiqc/modules/gatk/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/gatk 2024-07-09T19:02:01,329 copying build/lib/multiqc/modules/gatk/varianteval.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/gatk 2024-07-09T19:02:01,332 copying build/lib/multiqc/modules/gatk/analyze_saturation_mutagenesis.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/gatk 2024-07-09T19:02:01,336 creating build/bdist.linux-armv7l/wheel/multiqc/modules/fastqc 2024-07-09T19:02:01,337 creating build/bdist.linux-armv7l/wheel/multiqc/modules/fastqc/assets 2024-07-09T19:02:01,339 creating build/bdist.linux-armv7l/wheel/multiqc/modules/fastqc/assets/css 2024-07-09T19:02:01,340 copying build/lib/multiqc/modules/fastqc/assets/css/multiqc_fastqc.css -> build/bdist.linux-armv7l/wheel/multiqc/modules/fastqc/assets/css 2024-07-09T19:02:01,343 creating build/bdist.linux-armv7l/wheel/multiqc/modules/fastqc/assets/js 2024-07-09T19:02:01,344 copying build/lib/multiqc/modules/fastqc/assets/js/multiqc_fastqc.js -> build/bdist.linux-armv7l/wheel/multiqc/modules/fastqc/assets/js 2024-07-09T19:02:01,347 copying build/lib/multiqc/modules/fastqc/fastqc.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/fastqc 2024-07-09T19:02:01,351 copying build/lib/multiqc/modules/fastqc/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/fastqc 2024-07-09T19:02:01,354 creating build/bdist.linux-armv7l/wheel/multiqc/modules/fastqc/fastqc_theoretical_gc 2024-07-09T19:02:01,355 copying build/lib/multiqc/modules/fastqc/fastqc_theoretical_gc/fastqc_theoretical_gc_hg38_txome.txt -> build/bdist.linux-armv7l/wheel/multiqc/modules/fastqc/fastqc_theoretical_gc 2024-07-09T19:02:01,357 copying build/lib/multiqc/modules/fastqc/fastqc_theoretical_gc/fastqc_theoretical_gc_hg38_genome.txt -> build/bdist.linux-armv7l/wheel/multiqc/modules/fastqc/fastqc_theoretical_gc 2024-07-09T19:02:01,359 copying build/lib/multiqc/modules/fastqc/fastqc_theoretical_gc/fastqc_theoretical_gc_mm10_txome.txt -> build/bdist.linux-armv7l/wheel/multiqc/modules/fastqc/fastqc_theoretical_gc 2024-07-09T19:02:01,361 copying build/lib/multiqc/modules/fastqc/fastqc_theoretical_gc/fastqc_theoretical_gc_mm10_genome.txt -> build/bdist.linux-armv7l/wheel/multiqc/modules/fastqc/fastqc_theoretical_gc 2024-07-09T19:02:01,363 creating build/bdist.linux-armv7l/wheel/multiqc/modules/damageprofiler 2024-07-09T19:02:01,364 copying build/lib/multiqc/modules/damageprofiler/damageprofiler.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/damageprofiler 2024-07-09T19:02:01,366 copying build/lib/multiqc/modules/damageprofiler/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/damageprofiler 2024-07-09T19:02:01,368 creating build/bdist.linux-armv7l/wheel/multiqc/modules/tophat 2024-07-09T19:02:01,369 copying build/lib/multiqc/modules/tophat/tophat.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/tophat 2024-07-09T19:02:01,372 copying build/lib/multiqc/modules/tophat/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/tophat 2024-07-09T19:02:01,374 creating build/bdist.linux-armv7l/wheel/multiqc/modules/conpair 2024-07-09T19:02:01,375 copying build/lib/multiqc/modules/conpair/conpair.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/conpair 2024-07-09T19:02:01,377 copying build/lib/multiqc/modules/conpair/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/conpair 2024-07-09T19:02:01,379 creating build/bdist.linux-armv7l/wheel/multiqc/modules/goleft_indexcov 2024-07-09T19:02:01,380 copying build/lib/multiqc/modules/goleft_indexcov/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/goleft_indexcov 2024-07-09T19:02:01,382 copying build/lib/multiqc/modules/goleft_indexcov/goleft_indexcov.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/goleft_indexcov 2024-07-09T19:02:01,384 copying build/lib/multiqc/modules/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules 2024-07-09T19:02:01,386 creating build/bdist.linux-armv7l/wheel/multiqc/modules/qualimap 2024-07-09T19:02:01,386 copying build/lib/multiqc/modules/qualimap/QM_RNASeq.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/qualimap 2024-07-09T19:02:01,389 copying build/lib/multiqc/modules/qualimap/qualimap.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/qualimap 2024-07-09T19:02:01,391 copying build/lib/multiqc/modules/qualimap/QM_BamQC.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/qualimap 2024-07-09T19:02:01,393 copying build/lib/multiqc/modules/qualimap/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/qualimap 2024-07-09T19:02:01,396 creating build/bdist.linux-armv7l/wheel/multiqc/modules/methylqa 2024-07-09T19:02:01,396 copying build/lib/multiqc/modules/methylqa/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/methylqa 2024-07-09T19:02:01,398 copying build/lib/multiqc/modules/methylqa/methylqa.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/methylqa 2024-07-09T19:02:01,401 creating build/bdist.linux-armv7l/wheel/multiqc/modules/vep 2024-07-09T19:02:01,402 copying build/lib/multiqc/modules/vep/vep.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/vep 2024-07-09T19:02:01,405 copying build/lib/multiqc/modules/vep/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/vep 2024-07-09T19:02:01,407 creating build/bdist.linux-armv7l/wheel/multiqc/modules/fgbio 2024-07-09T19:02:01,408 copying build/lib/multiqc/modules/fgbio/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/fgbio 2024-07-09T19:02:01,410 copying build/lib/multiqc/modules/fgbio/groupreadsbyumi.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/fgbio 2024-07-09T19:02:01,412 copying build/lib/multiqc/modules/fgbio/ErrorRateByReadPosition.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/fgbio 2024-07-09T19:02:01,415 copying build/lib/multiqc/modules/fgbio/fgbio.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/fgbio 2024-07-09T19:02:01,417 creating build/bdist.linux-armv7l/wheel/multiqc/modules/fastp 2024-07-09T19:02:01,418 copying build/lib/multiqc/modules/fastp/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/fastp 2024-07-09T19:02:01,420 copying build/lib/multiqc/modules/fastp/fastp.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/fastp 2024-07-09T19:02:01,424 creating build/bdist.linux-armv7l/wheel/multiqc/modules/skewer 2024-07-09T19:02:01,425 copying build/lib/multiqc/modules/skewer/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/skewer 2024-07-09T19:02:01,427 copying build/lib/multiqc/modules/skewer/skewer.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/skewer 2024-07-09T19:02:01,430 creating build/bdist.linux-armv7l/wheel/multiqc/modules/salmon 2024-07-09T19:02:01,431 copying build/lib/multiqc/modules/salmon/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/salmon 2024-07-09T19:02:01,433 copying build/lib/multiqc/modules/salmon/salmon.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/salmon 2024-07-09T19:02:01,436 creating build/bdist.linux-armv7l/wheel/multiqc/modules/homer 2024-07-09T19:02:01,438 copying build/lib/multiqc/modules/homer/tagdirectory.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/homer 2024-07-09T19:02:01,441 copying build/lib/multiqc/modules/homer/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/homer 2024-07-09T19:02:01,443 copying build/lib/multiqc/modules/homer/homer.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/homer 2024-07-09T19:02:01,445 copying build/lib/multiqc/modules/homer/findpeaks.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/homer 2024-07-09T19:02:01,448 creating build/bdist.linux-armv7l/wheel/multiqc/modules/seqyclean 2024-07-09T19:02:01,449 copying build/lib/multiqc/modules/seqyclean/seqyclean.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/seqyclean 2024-07-09T19:02:01,451 copying build/lib/multiqc/modules/seqyclean/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/seqyclean 2024-07-09T19:02:01,454 creating build/bdist.linux-armv7l/wheel/multiqc/modules/mirtop 2024-07-09T19:02:01,455 copying build/lib/multiqc/modules/mirtop/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/mirtop 2024-07-09T19:02:01,457 copying build/lib/multiqc/modules/mirtop/mirtop.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/mirtop 2024-07-09T19:02:01,460 creating build/bdist.linux-armv7l/wheel/multiqc/modules/prokka 2024-07-09T19:02:01,461 copying build/lib/multiqc/modules/prokka/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/prokka 2024-07-09T19:02:01,463 copying build/lib/multiqc/modules/prokka/prokka.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/prokka 2024-07-09T19:02:01,466 creating build/bdist.linux-armv7l/wheel/multiqc/modules/whatshap 2024-07-09T19:02:01,468 copying build/lib/multiqc/modules/whatshap/whatshap.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/whatshap 2024-07-09T19:02:01,471 copying build/lib/multiqc/modules/whatshap/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/whatshap 2024-07-09T19:02:01,474 creating build/bdist.linux-armv7l/wheel/multiqc/modules/deeptools 2024-07-09T19:02:01,475 copying build/lib/multiqc/modules/deeptools/plotCoverage.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/deeptools 2024-07-09T19:02:01,478 copying build/lib/multiqc/modules/deeptools/plotEnrichment.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/deeptools 2024-07-09T19:02:01,480 copying build/lib/multiqc/modules/deeptools/plotProfile.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/deeptools 2024-07-09T19:02:01,482 copying build/lib/multiqc/modules/deeptools/estimateReadFiltering.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/deeptools 2024-07-09T19:02:01,485 copying build/lib/multiqc/modules/deeptools/bamPEFragmentSizeTable.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/deeptools 2024-07-09T19:02:01,488 copying build/lib/multiqc/modules/deeptools/deeptools.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/deeptools 2024-07-09T19:02:01,491 copying build/lib/multiqc/modules/deeptools/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/deeptools 2024-07-09T19:02:01,493 copying build/lib/multiqc/modules/deeptools/plotCorrelation.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/deeptools 2024-07-09T19:02:01,495 copying build/lib/multiqc/modules/deeptools/plotFingerprint.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/deeptools 2024-07-09T19:02:01,497 copying build/lib/multiqc/modules/deeptools/bamPEFragmentSizeDistribution.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/deeptools 2024-07-09T19:02:01,499 copying build/lib/multiqc/modules/deeptools/plotPCA.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/deeptools 2024-07-09T19:02:01,502 creating build/bdist.linux-armv7l/wheel/multiqc/modules/purple 2024-07-09T19:02:01,503 copying build/lib/multiqc/modules/purple/purple.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/purple 2024-07-09T19:02:01,506 copying build/lib/multiqc/modules/purple/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/purple 2024-07-09T19:02:01,508 creating build/bdist.linux-armv7l/wheel/multiqc/modules/bbduk 2024-07-09T19:02:01,509 copying build/lib/multiqc/modules/bbduk/bbduk.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/bbduk 2024-07-09T19:02:01,512 copying build/lib/multiqc/modules/bbduk/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/bbduk 2024-07-09T19:02:01,514 creating build/bdist.linux-armv7l/wheel/multiqc/modules/supernova 2024-07-09T19:02:01,515 copying build/lib/multiqc/modules/supernova/supernova.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/supernova 2024-07-09T19:02:01,519 copying build/lib/multiqc/modules/supernova/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/supernova 2024-07-09T19:02:01,521 creating build/bdist.linux-armv7l/wheel/multiqc/modules/featureCounts 2024-07-09T19:02:01,522 copying build/lib/multiqc/modules/featureCounts/feature_counts.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/featureCounts 2024-07-09T19:02:01,525 copying build/lib/multiqc/modules/featureCounts/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/featureCounts 2024-07-09T19:02:01,527 creating build/bdist.linux-armv7l/wheel/multiqc/modules/optitype 2024-07-09T19:02:01,528 copying build/lib/multiqc/modules/optitype/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/optitype 2024-07-09T19:02:01,530 copying build/lib/multiqc/modules/optitype/optitype.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/optitype 2024-07-09T19:02:01,533 creating build/bdist.linux-armv7l/wheel/multiqc/modules/snippy 2024-07-09T19:02:01,534 copying build/lib/multiqc/modules/snippy/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/snippy 2024-07-09T19:02:01,537 copying build/lib/multiqc/modules/snippy/snippy.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/snippy 2024-07-09T19:02:01,539 creating build/bdist.linux-armv7l/wheel/multiqc/modules/minionqc 2024-07-09T19:02:01,541 copying build/lib/multiqc/modules/minionqc/minionqc.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/minionqc 2024-07-09T19:02:01,544 copying build/lib/multiqc/modules/minionqc/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/minionqc 2024-07-09T19:02:01,546 creating build/bdist.linux-armv7l/wheel/multiqc/modules/freyja 2024-07-09T19:02:01,547 copying build/lib/multiqc/modules/freyja/freyja.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/freyja 2024-07-09T19:02:01,550 copying build/lib/multiqc/modules/freyja/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/freyja 2024-07-09T19:02:01,553 creating build/bdist.linux-armv7l/wheel/multiqc/modules/porechop 2024-07-09T19:02:01,554 copying build/lib/multiqc/modules/porechop/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/porechop 2024-07-09T19:02:01,556 copying build/lib/multiqc/modules/porechop/porechop.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/porechop 2024-07-09T19:02:01,559 creating build/bdist.linux-armv7l/wheel/multiqc/modules/sourmash 2024-07-09T19:02:01,560 copying build/lib/multiqc/modules/sourmash/compare.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/sourmash 2024-07-09T19:02:01,563 copying build/lib/multiqc/modules/sourmash/gather.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/sourmash 2024-07-09T19:02:01,565 copying build/lib/multiqc/modules/sourmash/sourmash.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/sourmash 2024-07-09T19:02:01,567 copying build/lib/multiqc/modules/sourmash/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/sourmash 2024-07-09T19:02:01,570 creating build/bdist.linux-armv7l/wheel/multiqc/modules/quast 2024-07-09T19:02:01,571 copying build/lib/multiqc/modules/quast/quast.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/quast 2024-07-09T19:02:01,574 copying build/lib/multiqc/modules/quast/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/quast 2024-07-09T19:02:01,577 creating build/bdist.linux-armv7l/wheel/multiqc/modules/bamdst 2024-07-09T19:02:01,578 copying build/lib/multiqc/modules/bamdst/bamdst.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/bamdst 2024-07-09T19:02:01,581 copying build/lib/multiqc/modules/bamdst/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/bamdst 2024-07-09T19:02:01,583 creating build/bdist.linux-armv7l/wheel/multiqc/modules/bakta 2024-07-09T19:02:01,585 copying build/lib/multiqc/modules/bakta/bakta.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/bakta 2024-07-09T19:02:01,587 copying build/lib/multiqc/modules/bakta/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/bakta 2024-07-09T19:02:01,590 creating build/bdist.linux-armv7l/wheel/multiqc/modules/flash 2024-07-09T19:02:01,591 copying build/lib/multiqc/modules/flash/flash.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/flash 2024-07-09T19:02:01,594 copying build/lib/multiqc/modules/flash/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/flash 2024-07-09T19:02:01,596 creating build/bdist.linux-armv7l/wheel/multiqc/modules/interop 2024-07-09T19:02:01,597 copying build/lib/multiqc/modules/interop/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/interop 2024-07-09T19:02:01,599 copying build/lib/multiqc/modules/interop/interop.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/interop 2024-07-09T19:02:01,602 copying build/lib/multiqc/modules/profile_runtime.py -> build/bdist.linux-armv7l/wheel/multiqc/modules 2024-07-09T19:02:01,606 creating build/bdist.linux-armv7l/wheel/multiqc/modules/biobambam2 2024-07-09T19:02:01,607 copying build/lib/multiqc/modules/biobambam2/biobambam2.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/biobambam2 2024-07-09T19:02:01,609 copying build/lib/multiqc/modules/biobambam2/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/biobambam2 2024-07-09T19:02:01,611 creating build/bdist.linux-armv7l/wheel/multiqc/modules/malt 2024-07-09T19:02:01,613 copying build/lib/multiqc/modules/malt/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/malt 2024-07-09T19:02:01,615 copying build/lib/multiqc/modules/malt/malt.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/malt 2024-07-09T19:02:01,618 creating build/bdist.linux-armv7l/wheel/multiqc/modules/nonpareil 2024-07-09T19:02:01,619 copying build/lib/multiqc/modules/nonpareil/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/nonpareil 2024-07-09T19:02:01,621 copying build/lib/multiqc/modules/nonpareil/nonpareil.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/nonpareil 2024-07-09T19:02:01,624 creating build/bdist.linux-armv7l/wheel/multiqc/modules/varscan2 2024-07-09T19:02:01,626 copying build/lib/multiqc/modules/varscan2/varscan2.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/varscan2 2024-07-09T19:02:01,628 copying build/lib/multiqc/modules/varscan2/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/varscan2 2024-07-09T19:02:01,630 creating build/bdist.linux-armv7l/wheel/multiqc/modules/theta2 2024-07-09T19:02:01,632 copying build/lib/multiqc/modules/theta2/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/theta2 2024-07-09T19:02:01,634 copying build/lib/multiqc/modules/theta2/theta2.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/theta2 2024-07-09T19:02:01,637 creating build/bdist.linux-armv7l/wheel/multiqc/modules/verifybamid 2024-07-09T19:02:01,638 copying build/lib/multiqc/modules/verifybamid/verifybamid.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/verifybamid 2024-07-09T19:02:01,641 copying build/lib/multiqc/modules/verifybamid/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/verifybamid 2024-07-09T19:02:01,644 creating build/bdist.linux-armv7l/wheel/multiqc/modules/sequali 2024-07-09T19:02:01,645 copying build/lib/multiqc/modules/sequali/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/sequali 2024-07-09T19:02:01,647 copying build/lib/multiqc/modules/sequali/sequali.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/sequali 2024-07-09T19:02:01,651 creating build/bdist.linux-armv7l/wheel/multiqc/modules/seqera_cli 2024-07-09T19:02:01,652 copying build/lib/multiqc/modules/seqera_cli/seqera_cli.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/seqera_cli 2024-07-09T19:02:01,655 copying build/lib/multiqc/modules/seqera_cli/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/seqera_cli 2024-07-09T19:02:01,658 creating build/bdist.linux-armv7l/wheel/multiqc/modules/stacks 2024-07-09T19:02:01,659 copying build/lib/multiqc/modules/stacks/stacks.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/stacks 2024-07-09T19:02:01,662 copying build/lib/multiqc/modules/stacks/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/stacks 2024-07-09T19:02:01,664 creating build/bdist.linux-armv7l/wheel/multiqc/modules/biobloomtools 2024-07-09T19:02:01,665 copying build/lib/multiqc/modules/biobloomtools/biobloomtools.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/biobloomtools 2024-07-09T19:02:01,667 copying build/lib/multiqc/modules/biobloomtools/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/biobloomtools 2024-07-09T19:02:01,670 creating build/bdist.linux-armv7l/wheel/multiqc/modules/bustools 2024-07-09T19:02:01,671 copying build/lib/multiqc/modules/bustools/bustools.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/bustools 2024-07-09T19:02:01,674 copying build/lib/multiqc/modules/bustools/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/bustools 2024-07-09T19:02:01,676 creating build/bdist.linux-armv7l/wheel/multiqc/modules/nextclade 2024-07-09T19:02:01,677 copying build/lib/multiqc/modules/nextclade/nextclade.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/nextclade 2024-07-09T19:02:01,680 copying build/lib/multiqc/modules/nextclade/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/nextclade 2024-07-09T19:02:01,683 creating build/bdist.linux-armv7l/wheel/multiqc/modules/afterqc 2024-07-09T19:02:01,684 copying build/lib/multiqc/modules/afterqc/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/afterqc 2024-07-09T19:02:01,686 copying build/lib/multiqc/modules/afterqc/afterqc.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/afterqc 2024-07-09T19:02:01,689 creating build/bdist.linux-armv7l/wheel/multiqc/modules/kallisto 2024-07-09T19:02:01,691 copying build/lib/multiqc/modules/kallisto/kallisto.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/kallisto 2024-07-09T19:02:01,693 copying build/lib/multiqc/modules/kallisto/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/kallisto 2024-07-09T19:02:01,696 creating build/bdist.linux-armv7l/wheel/multiqc/modules/pychopper 2024-07-09T19:02:01,697 copying build/lib/multiqc/modules/pychopper/pychopper.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/pychopper 2024-07-09T19:02:01,699 copying build/lib/multiqc/modules/pychopper/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/pychopper 2024-07-09T19:02:01,702 creating build/bdist.linux-armv7l/wheel/multiqc/modules/biscuit 2024-07-09T19:02:01,703 copying build/lib/multiqc/modules/biscuit/biscuit.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/biscuit 2024-07-09T19:02:01,707 copying build/lib/multiqc/modules/biscuit/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/biscuit 2024-07-09T19:02:01,710 creating build/bdist.linux-armv7l/wheel/multiqc/modules/peddy 2024-07-09T19:02:01,711 copying build/lib/multiqc/modules/peddy/peddy.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/peddy 2024-07-09T19:02:01,713 copying build/lib/multiqc/modules/peddy/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/peddy 2024-07-09T19:02:01,716 creating build/bdist.linux-armv7l/wheel/multiqc/modules/hifiasm 2024-07-09T19:02:01,717 copying build/lib/multiqc/modules/hifiasm/hifiasm.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/hifiasm 2024-07-09T19:02:01,720 copying build/lib/multiqc/modules/hifiasm/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/hifiasm 2024-07-09T19:02:01,722 creating build/bdist.linux-armv7l/wheel/multiqc/modules/rseqc 2024-07-09T19:02:01,723 copying build/lib/multiqc/modules/rseqc/gene_body_coverage.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/rseqc 2024-07-09T19:02:01,726 copying build/lib/multiqc/modules/rseqc/read_distribution.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/rseqc 2024-07-09T19:02:01,729 copying build/lib/multiqc/modules/rseqc/junction_saturation.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/rseqc 2024-07-09T19:02:01,731 copying build/lib/multiqc/modules/rseqc/read_gc.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/rseqc 2024-07-09T19:02:01,733 creating build/bdist.linux-armv7l/wheel/multiqc/modules/rseqc/assets 2024-07-09T19:02:01,735 creating build/bdist.linux-armv7l/wheel/multiqc/modules/rseqc/assets/js 2024-07-09T19:02:01,736 copying build/lib/multiqc/modules/rseqc/assets/js/multiqc_rseqc.js -> build/bdist.linux-armv7l/wheel/multiqc/modules/rseqc/assets/js 2024-07-09T19:02:01,738 copying build/lib/multiqc/modules/rseqc/read_duplication.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/rseqc 2024-07-09T19:02:01,740 copying build/lib/multiqc/modules/rseqc/tin.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/rseqc 2024-07-09T19:02:01,742 copying build/lib/multiqc/modules/rseqc/inner_distance.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/rseqc 2024-07-09T19:02:01,744 copying build/lib/multiqc/modules/rseqc/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/rseqc 2024-07-09T19:02:01,746 copying build/lib/multiqc/modules/rseqc/bam_stat.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/rseqc 2024-07-09T19:02:01,749 copying build/lib/multiqc/modules/rseqc/junction_annotation.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/rseqc 2024-07-09T19:02:01,751 copying build/lib/multiqc/modules/rseqc/rseqc.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/rseqc 2024-07-09T19:02:01,754 copying build/lib/multiqc/modules/rseqc/infer_experiment.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/rseqc 2024-07-09T19:02:01,756 creating build/bdist.linux-armv7l/wheel/multiqc/modules/mirtrace 2024-07-09T19:02:01,757 copying build/lib/multiqc/modules/mirtrace/mirtrace.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/mirtrace 2024-07-09T19:02:01,760 copying build/lib/multiqc/modules/mirtrace/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/mirtrace 2024-07-09T19:02:01,762 creating build/bdist.linux-armv7l/wheel/multiqc/modules/sexdeterrmine 2024-07-09T19:02:01,764 copying build/lib/multiqc/modules/sexdeterrmine/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/sexdeterrmine 2024-07-09T19:02:01,766 copying build/lib/multiqc/modules/sexdeterrmine/sexdeterrmine.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/sexdeterrmine 2024-07-09T19:02:01,769 creating build/bdist.linux-armv7l/wheel/multiqc/modules/bowtie2 2024-07-09T19:02:01,770 copying build/lib/multiqc/modules/bowtie2/bowtie2.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/bowtie2 2024-07-09T19:02:01,773 copying build/lib/multiqc/modules/bowtie2/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/bowtie2 2024-07-09T19:02:01,776 creating build/bdist.linux-armv7l/wheel/multiqc/modules/ngsderive 2024-07-09T19:02:01,777 copying build/lib/multiqc/modules/ngsderive/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/ngsderive 2024-07-09T19:02:01,779 copying build/lib/multiqc/modules/ngsderive/ngsderive.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/ngsderive 2024-07-09T19:02:01,782 creating build/bdist.linux-armv7l/wheel/multiqc/modules/gffcompare 2024-07-09T19:02:01,783 copying build/lib/multiqc/modules/gffcompare/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/gffcompare 2024-07-09T19:02:01,786 copying build/lib/multiqc/modules/gffcompare/gffcompare.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/gffcompare 2024-07-09T19:02:01,789 creating build/bdist.linux-armv7l/wheel/multiqc/modules/motus 2024-07-09T19:02:01,790 copying build/lib/multiqc/modules/motus/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/motus 2024-07-09T19:02:01,793 copying build/lib/multiqc/modules/motus/motus.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/motus 2024-07-09T19:02:01,796 creating build/bdist.linux-armv7l/wheel/multiqc/modules/samblaster 2024-07-09T19:02:01,797 copying build/lib/multiqc/modules/samblaster/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/samblaster 2024-07-09T19:02:01,799 copying build/lib/multiqc/modules/samblaster/samblaster.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/samblaster 2024-07-09T19:02:01,802 creating build/bdist.linux-armv7l/wheel/multiqc/modules/anglerfish 2024-07-09T19:02:01,803 copying build/lib/multiqc/modules/anglerfish/anglerfish.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/anglerfish 2024-07-09T19:02:01,806 copying build/lib/multiqc/modules/anglerfish/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/anglerfish 2024-07-09T19:02:01,808 creating build/bdist.linux-armv7l/wheel/multiqc/modules/filtlong 2024-07-09T19:02:01,809 copying build/lib/multiqc/modules/filtlong/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/filtlong 2024-07-09T19:02:01,811 copying build/lib/multiqc/modules/filtlong/filtlong.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/filtlong 2024-07-09T19:02:01,814 creating build/bdist.linux-armv7l/wheel/multiqc/modules/odgi 2024-07-09T19:02:01,815 copying build/lib/multiqc/modules/odgi/odgi.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/odgi 2024-07-09T19:02:01,818 copying build/lib/multiqc/modules/odgi/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/odgi 2024-07-09T19:02:01,820 creating build/bdist.linux-armv7l/wheel/multiqc/modules/bowtie1 2024-07-09T19:02:01,821 copying build/lib/multiqc/modules/bowtie1/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/bowtie1 2024-07-09T19:02:01,823 copying build/lib/multiqc/modules/bowtie1/bowtie1.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/bowtie1 2024-07-09T19:02:01,826 creating build/bdist.linux-armv7l/wheel/multiqc/modules/metaphlan 2024-07-09T19:02:01,828 copying build/lib/multiqc/modules/metaphlan/metaphlan.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/metaphlan 2024-07-09T19:02:01,831 copying build/lib/multiqc/modules/metaphlan/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/metaphlan 2024-07-09T19:02:01,833 creating build/bdist.linux-armv7l/wheel/multiqc/modules/sickle 2024-07-09T19:02:01,834 copying build/lib/multiqc/modules/sickle/sickle.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/sickle 2024-07-09T19:02:01,837 copying build/lib/multiqc/modules/sickle/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/sickle 2024-07-09T19:02:01,839 creating build/bdist.linux-armv7l/wheel/multiqc/modules/multivcfanalyzer 2024-07-09T19:02:01,841 copying build/lib/multiqc/modules/multivcfanalyzer/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/multivcfanalyzer 2024-07-09T19:02:01,843 copying build/lib/multiqc/modules/multivcfanalyzer/multivcfanalyzer.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/multivcfanalyzer 2024-07-09T19:02:01,846 creating build/bdist.linux-armv7l/wheel/multiqc/modules/somalier 2024-07-09T19:02:01,847 copying build/lib/multiqc/modules/somalier/somalier.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/somalier 2024-07-09T19:02:01,850 copying build/lib/multiqc/modules/somalier/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/somalier 2024-07-09T19:02:01,853 creating build/bdist.linux-armv7l/wheel/multiqc/modules/checkqc 2024-07-09T19:02:01,854 copying build/lib/multiqc/modules/checkqc/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/checkqc 2024-07-09T19:02:01,856 copying build/lib/multiqc/modules/checkqc/checkqc.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/checkqc 2024-07-09T19:02:01,859 creating build/bdist.linux-armv7l/wheel/multiqc/modules/kaiju 2024-07-09T19:02:01,861 copying build/lib/multiqc/modules/kaiju/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/kaiju 2024-07-09T19:02:01,863 copying build/lib/multiqc/modules/kaiju/kaiju.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/kaiju 2024-07-09T19:02:01,866 creating build/bdist.linux-armv7l/wheel/multiqc/modules/fastq_screen 2024-07-09T19:02:01,867 copying build/lib/multiqc/modules/fastq_screen/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/fastq_screen 2024-07-09T19:02:01,869 copying build/lib/multiqc/modules/fastq_screen/fastq_screen.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/fastq_screen 2024-07-09T19:02:01,872 creating build/bdist.linux-armv7l/wheel/multiqc/modules/kat 2024-07-09T19:02:01,873 copying build/lib/multiqc/modules/kat/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/kat 2024-07-09T19:02:01,875 copying build/lib/multiqc/modules/kat/kat.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/kat 2024-07-09T19:02:01,878 creating build/bdist.linux-armv7l/wheel/multiqc/modules/bbmap 2024-07-09T19:02:01,879 copying build/lib/multiqc/modules/bbmap/plot_qahist.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/bbmap 2024-07-09T19:02:01,882 copying build/lib/multiqc/modules/bbmap/plot_bqhist.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/bbmap 2024-07-09T19:02:01,884 copying build/lib/multiqc/modules/bbmap/bbmap_filetypes.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/bbmap 2024-07-09T19:02:01,886 copying build/lib/multiqc/modules/bbmap/plot_ihist.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/bbmap 2024-07-09T19:02:01,888 copying build/lib/multiqc/modules/bbmap/plot_qchist.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/bbmap 2024-07-09T19:02:01,890 copying build/lib/multiqc/modules/bbmap/plot_indelhist.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/bbmap 2024-07-09T19:02:01,892 copying build/lib/multiqc/modules/bbmap/plot_qhist.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/bbmap 2024-07-09T19:02:01,894 copying build/lib/multiqc/modules/bbmap/plot_idhist.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/bbmap 2024-07-09T19:02:01,897 copying build/lib/multiqc/modules/bbmap/plot_bhist.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/bbmap 2024-07-09T19:02:01,899 copying build/lib/multiqc/modules/bbmap/plot_aqhist.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/bbmap 2024-07-09T19:02:01,901 copying build/lib/multiqc/modules/bbmap/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/bbmap 2024-07-09T19:02:01,903 copying build/lib/multiqc/modules/bbmap/bbmap.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/bbmap 2024-07-09T19:02:01,905 copying build/lib/multiqc/modules/bbmap/plot_covhist.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/bbmap 2024-07-09T19:02:01,907 copying build/lib/multiqc/modules/bbmap/plot_basic_hist.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/bbmap 2024-07-09T19:02:01,909 copying build/lib/multiqc/modules/bbmap/plot_mhist.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/bbmap 2024-07-09T19:02:01,912 creating build/bdist.linux-armv7l/wheel/multiqc/modules/nanostat 2024-07-09T19:02:01,913 copying build/lib/multiqc/modules/nanostat/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/nanostat 2024-07-09T19:02:01,915 copying build/lib/multiqc/modules/nanostat/nanostat.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/nanostat 2024-07-09T19:02:01,918 creating build/bdist.linux-armv7l/wheel/multiqc/modules/mapdamage 2024-07-09T19:02:01,919 copying build/lib/multiqc/modules/mapdamage/mapdamage.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/mapdamage 2024-07-09T19:02:01,922 copying build/lib/multiqc/modules/mapdamage/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/mapdamage 2024-07-09T19:02:01,924 creating build/bdist.linux-armv7l/wheel/multiqc/modules/lima 2024-07-09T19:02:01,926 copying build/lib/multiqc/modules/lima/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/lima 2024-07-09T19:02:01,928 copying build/lib/multiqc/modules/lima/lima.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/lima 2024-07-09T19:02:01,931 creating build/bdist.linux-armv7l/wheel/multiqc/modules/jcvi 2024-07-09T19:02:01,932 copying build/lib/multiqc/modules/jcvi/jcvi.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/jcvi 2024-07-09T19:02:01,935 copying build/lib/multiqc/modules/jcvi/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/jcvi 2024-07-09T19:02:01,937 creating build/bdist.linux-armv7l/wheel/multiqc/modules/bcftools 2024-07-09T19:02:01,938 copying build/lib/multiqc/modules/bcftools/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/bcftools 2024-07-09T19:02:01,941 copying build/lib/multiqc/modules/bcftools/bcftools.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/bcftools 2024-07-09T19:02:01,943 copying build/lib/multiqc/modules/bcftools/stats.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/bcftools 2024-07-09T19:02:01,946 creating build/bdist.linux-armv7l/wheel/multiqc/modules/adapterremoval 2024-07-09T19:02:01,947 copying build/lib/multiqc/modules/adapterremoval/adapterremoval.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/adapterremoval 2024-07-09T19:02:01,950 copying build/lib/multiqc/modules/adapterremoval/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/adapterremoval 2024-07-09T19:02:01,952 creating build/bdist.linux-armv7l/wheel/multiqc/modules/cutadapt 2024-07-09T19:02:01,953 copying build/lib/multiqc/modules/cutadapt/cutadapt.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/cutadapt 2024-07-09T19:02:01,956 copying build/lib/multiqc/modules/cutadapt/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/cutadapt 2024-07-09T19:02:01,958 creating build/bdist.linux-armv7l/wheel/multiqc/modules/ivar 2024-07-09T19:02:01,960 copying build/lib/multiqc/modules/ivar/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/ivar 2024-07-09T19:02:01,962 copying build/lib/multiqc/modules/ivar/ivar.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/ivar 2024-07-09T19:02:01,965 creating build/bdist.linux-armv7l/wheel/multiqc/modules/phantompeakqualtools 2024-07-09T19:02:01,966 copying build/lib/multiqc/modules/phantompeakqualtools/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/phantompeakqualtools 2024-07-09T19:02:01,968 copying build/lib/multiqc/modules/phantompeakqualtools/phantompeakqualtools.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/phantompeakqualtools 2024-07-09T19:02:01,971 creating build/bdist.linux-armv7l/wheel/multiqc/modules/truvari 2024-07-09T19:02:01,972 copying build/lib/multiqc/modules/truvari/truvari.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/truvari 2024-07-09T19:02:01,974 copying build/lib/multiqc/modules/truvari/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/truvari 2024-07-09T19:02:01,976 copying build/lib/multiqc/modules/truvari/bench.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/truvari 2024-07-09T19:02:01,979 creating build/bdist.linux-armv7l/wheel/multiqc/modules/hicexplorer 2024-07-09T19:02:01,980 copying build/lib/multiqc/modules/hicexplorer/hicexplorer.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/hicexplorer 2024-07-09T19:02:01,983 copying build/lib/multiqc/modules/hicexplorer/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/hicexplorer 2024-07-09T19:02:01,985 creating build/bdist.linux-armv7l/wheel/multiqc/modules/kraken 2024-07-09T19:02:01,987 copying build/lib/multiqc/modules/kraken/kraken.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/kraken 2024-07-09T19:02:01,990 copying build/lib/multiqc/modules/kraken/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/kraken 2024-07-09T19:02:01,992 creating build/bdist.linux-armv7l/wheel/multiqc/modules/gopeaks 2024-07-09T19:02:01,993 copying build/lib/multiqc/modules/gopeaks/gopeaks.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/gopeaks 2024-07-09T19:02:01,996 copying build/lib/multiqc/modules/gopeaks/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/gopeaks 2024-07-09T19:02:01,998 creating build/bdist.linux-armv7l/wheel/multiqc/modules/cellranger 2024-07-09T19:02:02,000 copying build/lib/multiqc/modules/cellranger/cellranger.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/cellranger 2024-07-09T19:02:02,002 copying build/lib/multiqc/modules/cellranger/utils.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/cellranger 2024-07-09T19:02:02,004 copying build/lib/multiqc/modules/cellranger/count.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/cellranger 2024-07-09T19:02:02,007 copying build/lib/multiqc/modules/cellranger/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/cellranger 2024-07-09T19:02:02,009 copying build/lib/multiqc/modules/cellranger/vdj.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/cellranger 2024-07-09T19:02:02,012 creating build/bdist.linux-armv7l/wheel/multiqc/core 2024-07-09T19:02:02,013 copying build/lib/multiqc/core/log_and_rich.py -> build/bdist.linux-armv7l/wheel/multiqc/core 2024-07-09T19:02:02,016 copying build/lib/multiqc/core/exceptions.py -> build/bdist.linux-armv7l/wheel/multiqc/core 2024-07-09T19:02:02,018 copying build/lib/multiqc/core/strict_helpers.py -> build/bdist.linux-armv7l/wheel/multiqc/core 2024-07-09T19:02:02,020 copying build/lib/multiqc/core/software_versions.py -> build/bdist.linux-armv7l/wheel/multiqc/core 2024-07-09T19:02:02,022 copying build/lib/multiqc/core/plugin_hooks.py -> build/bdist.linux-armv7l/wheel/multiqc/core 2024-07-09T19:02:02,025 copying build/lib/multiqc/core/update_config.py -> build/bdist.linux-armv7l/wheel/multiqc/core 2024-07-09T19:02:02,027 copying build/lib/multiqc/core/order_modules_and_sections.py -> build/bdist.linux-armv7l/wheel/multiqc/core 2024-07-09T19:02:02,030 copying build/lib/multiqc/core/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/core 2024-07-09T19:02:02,032 copying build/lib/multiqc/core/tmp_dir.py -> build/bdist.linux-armv7l/wheel/multiqc/core 2024-07-09T19:02:02,034 copying build/lib/multiqc/core/file_search.py -> build/bdist.linux-armv7l/wheel/multiqc/core 2024-07-09T19:02:02,036 copying build/lib/multiqc/core/version_check.py -> build/bdist.linux-armv7l/wheel/multiqc/core 2024-07-09T19:02:02,039 copying build/lib/multiqc/core/exec_modules.py -> build/bdist.linux-armv7l/wheel/multiqc/core 2024-07-09T19:02:02,041 copying build/lib/multiqc/core/write_results.py -> build/bdist.linux-armv7l/wheel/multiqc/core 2024-07-09T19:02:02,044 copying build/lib/multiqc/multiqc.py -> build/bdist.linux-armv7l/wheel/multiqc 2024-07-09T19:02:02,047 copying build/lib/multiqc/interactive.py -> build/bdist.linux-armv7l/wheel/multiqc 2024-07-09T19:02:02,050 creating build/bdist.linux-armv7l/wheel/multiqc/plots 2024-07-09T19:02:02,051 copying build/lib/multiqc/plots/heatmap.py -> build/bdist.linux-armv7l/wheel/multiqc/plots 2024-07-09T19:02:02,054 creating build/bdist.linux-armv7l/wheel/multiqc/plots/plotly 2024-07-09T19:02:02,055 copying build/lib/multiqc/plots/plotly/heatmap.py -> build/bdist.linux-armv7l/wheel/multiqc/plots/plotly 2024-07-09T19:02:02,058 copying build/lib/multiqc/plots/plotly/scatter.py -> build/bdist.linux-armv7l/wheel/multiqc/plots/plotly 2024-07-09T19:02:02,061 copying build/lib/multiqc/plots/plotly/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/plots/plotly 2024-07-09T19:02:02,063 copying build/lib/multiqc/plots/plotly/box.py -> build/bdist.linux-armv7l/wheel/multiqc/plots/plotly 2024-07-09T19:02:02,066 copying build/lib/multiqc/plots/plotly/bar.py -> build/bdist.linux-armv7l/wheel/multiqc/plots/plotly 2024-07-09T19:02:02,068 copying build/lib/multiqc/plots/plotly/violin.py -> build/bdist.linux-armv7l/wheel/multiqc/plots/plotly 2024-07-09T19:02:02,071 copying build/lib/multiqc/plots/plotly/table.py -> build/bdist.linux-armv7l/wheel/multiqc/plots/plotly 2024-07-09T19:02:02,074 copying build/lib/multiqc/plots/plotly/line.py -> build/bdist.linux-armv7l/wheel/multiqc/plots/plotly 2024-07-09T19:02:02,078 copying build/lib/multiqc/plots/plotly/plot.py -> build/bdist.linux-armv7l/wheel/multiqc/plots/plotly 2024-07-09T19:02:02,081 copying build/lib/multiqc/plots/scatter.py -> build/bdist.linux-armv7l/wheel/multiqc/plots 2024-07-09T19:02:02,084 copying build/lib/multiqc/plots/table_object.py -> build/bdist.linux-armv7l/wheel/multiqc/plots 2024-07-09T19:02:02,087 copying build/lib/multiqc/plots/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/plots 2024-07-09T19:02:02,089 copying build/lib/multiqc/plots/box.py -> build/bdist.linux-armv7l/wheel/multiqc/plots 2024-07-09T19:02:02,091 copying build/lib/multiqc/plots/violin.py -> build/bdist.linux-armv7l/wheel/multiqc/plots 2024-07-09T19:02:02,093 copying build/lib/multiqc/plots/table.py -> build/bdist.linux-armv7l/wheel/multiqc/plots 2024-07-09T19:02:02,095 copying build/lib/multiqc/plots/bargraph.py -> build/bdist.linux-armv7l/wheel/multiqc/plots 2024-07-09T19:02:02,097 copying build/lib/multiqc/plots/linegraph.py -> build/bdist.linux-armv7l/wheel/multiqc/plots 2024-07-09T19:02:02,100 copying build/lib/multiqc/config_defaults.yaml -> build/bdist.linux-armv7l/wheel/multiqc 2024-07-09T19:02:02,102 copying build/lib/multiqc/config.py -> build/bdist.linux-armv7l/wheel/multiqc 2024-07-09T19:02:02,105 copying build/lib/multiqc/report.py -> build/bdist.linux-armv7l/wheel/multiqc 2024-07-09T19:02:02,108 copying build/lib/multiqc/validation.py -> build/bdist.linux-armv7l/wheel/multiqc 2024-07-09T19:02:02,110 creating build/bdist.linux-armv7l/wheel/multiqc/templates 2024-07-09T19:02:02,112 creating build/bdist.linux-armv7l/wheel/multiqc/templates/simple 2024-07-09T19:02:02,113 copying build/lib/multiqc/templates/simple/nav.html -> build/bdist.linux-armv7l/wheel/multiqc/templates/simple 2024-07-09T19:02:02,116 copying build/lib/multiqc/templates/simple/foot.html -> build/bdist.linux-armv7l/wheel/multiqc/templates/simple 2024-07-09T19:02:02,118 copying build/lib/multiqc/templates/simple/includes.html -> build/bdist.linux-armv7l/wheel/multiqc/templates/simple 2024-07-09T19:02:02,120 copying build/lib/multiqc/templates/simple/header.html -> build/bdist.linux-armv7l/wheel/multiqc/templates/simple 2024-07-09T19:02:02,122 copying build/lib/multiqc/templates/simple/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/templates/simple 2024-07-09T19:02:02,124 copying build/lib/multiqc/templates/simple/toolbox.html -> build/bdist.linux-armv7l/wheel/multiqc/templates/simple 2024-07-09T19:02:02,126 copying build/lib/multiqc/templates/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/templates 2024-07-09T19:02:02,128 creating build/bdist.linux-armv7l/wheel/multiqc/templates/default 2024-07-09T19:02:02,129 copying build/lib/multiqc/templates/default/general_stats.html -> build/bdist.linux-armv7l/wheel/multiqc/templates/default 2024-07-09T19:02:02,131 creating build/bdist.linux-armv7l/wheel/multiqc/templates/default/assets 2024-07-09T19:02:02,133 creating build/bdist.linux-armv7l/wheel/multiqc/templates/default/assets/img 2024-07-09T19:02:02,135 copying build/lib/multiqc/templates/default/assets/img/favicon-16x16.png -> build/bdist.linux-armv7l/wheel/multiqc/templates/default/assets/img 2024-07-09T19:02:02,137 copying build/lib/multiqc/templates/default/assets/img/MultiQC_logo_dark.svg -> build/bdist.linux-armv7l/wheel/multiqc/templates/default/assets/img 2024-07-09T19:02:02,139 copying build/lib/multiqc/templates/default/assets/img/favicon-96x96.png -> build/bdist.linux-armv7l/wheel/multiqc/templates/default/assets/img 2024-07-09T19:02:02,142 copying build/lib/multiqc/templates/default/assets/img/seqera_logo_mono.png -> build/bdist.linux-armv7l/wheel/multiqc/templates/default/assets/img 2024-07-09T19:02:02,144 copying build/lib/multiqc/templates/default/assets/img/MultiQC_logo.png -> build/bdist.linux-armv7l/wheel/multiqc/templates/default/assets/img 2024-07-09T19:02:02,147 copying build/lib/multiqc/templates/default/assets/img/seqera_logo.png -> build/bdist.linux-armv7l/wheel/multiqc/templates/default/assets/img 2024-07-09T19:02:02,149 copying build/lib/multiqc/templates/default/assets/img/favicon-32x32.png -> build/bdist.linux-armv7l/wheel/multiqc/templates/default/assets/img 2024-07-09T19:02:02,152 creating build/bdist.linux-armv7l/wheel/multiqc/templates/default/assets/fonts 2024-07-09T19:02:02,153 copying build/lib/multiqc/templates/default/assets/fonts/glyphicons-halflings-regular.woff2 -> build/bdist.linux-armv7l/wheel/multiqc/templates/default/assets/fonts 2024-07-09T19:02:02,156 copying build/lib/multiqc/templates/default/assets/fonts/glyphicons-halflings-regular.woff -> build/bdist.linux-armv7l/wheel/multiqc/templates/default/assets/fonts 2024-07-09T19:02:02,158 copying build/lib/multiqc/templates/default/assets/fonts/glyphicons-halflings-regular.ttf -> build/bdist.linux-armv7l/wheel/multiqc/templates/default/assets/fonts 2024-07-09T19:02:02,162 copying build/lib/multiqc/templates/default/assets/fonts/glyphicons-halflings-regular.svg -> build/bdist.linux-armv7l/wheel/multiqc/templates/default/assets/fonts 2024-07-09T19:02:02,166 copying build/lib/multiqc/templates/default/assets/fonts/glyphicons-halflings-regular.eot -> build/bdist.linux-armv7l/wheel/multiqc/templates/default/assets/fonts 2024-07-09T19:02:02,169 creating build/bdist.linux-armv7l/wheel/multiqc/templates/default/assets/css 2024-07-09T19:02:02,170 copying build/lib/multiqc/templates/default/assets/css/jquery.toast.css -> build/bdist.linux-armv7l/wheel/multiqc/templates/default/assets/css 2024-07-09T19:02:02,172 copying build/lib/multiqc/templates/default/assets/css/bootstrap.min.css -> build/bdist.linux-armv7l/wheel/multiqc/templates/default/assets/css 2024-07-09T19:02:02,176 copying build/lib/multiqc/templates/default/assets/css/default_multiqc.css -> build/bdist.linux-armv7l/wheel/multiqc/templates/default/assets/css 2024-07-09T19:02:02,179 creating build/bdist.linux-armv7l/wheel/multiqc/templates/default/assets/js 2024-07-09T19:02:02,180 copying build/lib/multiqc/templates/default/assets/js/toolbox.js -> build/bdist.linux-armv7l/wheel/multiqc/templates/default/assets/js 2024-07-09T19:02:02,183 creating build/bdist.linux-armv7l/wheel/multiqc/templates/default/assets/js/plots 2024-07-09T19:02:02,184 copying build/lib/multiqc/templates/default/assets/js/plots/line.js -> build/bdist.linux-armv7l/wheel/multiqc/templates/default/assets/js/plots 2024-07-09T19:02:02,186 copying build/lib/multiqc/templates/default/assets/js/plots/box.js -> build/bdist.linux-armv7l/wheel/multiqc/templates/default/assets/js/plots 2024-07-09T19:02:02,188 copying build/lib/multiqc/templates/default/assets/js/plots/bar.js -> build/bdist.linux-armv7l/wheel/multiqc/templates/default/assets/js/plots 2024-07-09T19:02:02,190 copying build/lib/multiqc/templates/default/assets/js/plots/violin.js -> build/bdist.linux-armv7l/wheel/multiqc/templates/default/assets/js/plots 2024-07-09T19:02:02,192 copying build/lib/multiqc/templates/default/assets/js/plots/heatmap.js -> build/bdist.linux-armv7l/wheel/multiqc/templates/default/assets/js/plots 2024-07-09T19:02:02,194 copying build/lib/multiqc/templates/default/assets/js/plots/scatter.js -> build/bdist.linux-armv7l/wheel/multiqc/templates/default/assets/js/plots 2024-07-09T19:02:02,197 creating build/bdist.linux-armv7l/wheel/multiqc/templates/default/assets/js/packages 2024-07-09T19:02:02,199 copying build/lib/multiqc/templates/default/assets/js/packages/jszip.min.js -> build/bdist.linux-armv7l/wheel/multiqc/templates/default/assets/js/packages 2024-07-09T19:02:02,203 copying build/lib/multiqc/templates/default/assets/js/packages/jquery.toast.min.js -> build/bdist.linux-armv7l/wheel/multiqc/templates/default/assets/js/packages 2024-07-09T19:02:02,205 copying build/lib/multiqc/templates/default/assets/js/packages/bootstrap.min.js -> build/bdist.linux-armv7l/wheel/multiqc/templates/default/assets/js/packages 2024-07-09T19:02:02,208 copying build/lib/multiqc/templates/default/assets/js/packages/jquery.tablesorter.min.js -> build/bdist.linux-armv7l/wheel/multiqc/templates/default/assets/js/packages 2024-07-09T19:02:02,212 copying build/lib/multiqc/templates/default/assets/js/packages/jquery-3.1.1.min.js -> build/bdist.linux-armv7l/wheel/multiqc/templates/default/assets/js/packages 2024-07-09T19:02:02,216 copying build/lib/multiqc/templates/default/assets/js/packages/jquery-ui.min.js -> build/bdist.linux-armv7l/wheel/multiqc/templates/default/assets/js/packages 2024-07-09T19:02:02,220 copying build/lib/multiqc/templates/default/assets/js/packages/plotly-2.27.0.min.js -> build/bdist.linux-armv7l/wheel/multiqc/templates/default/assets/js/packages 2024-07-09T19:02:02,285 copying build/lib/multiqc/templates/default/assets/js/packages/plotly-2.27.0.js -> build/bdist.linux-armv7l/wheel/multiqc/templates/default/assets/js/packages 2024-07-09T19:02:02,499 copying build/lib/multiqc/templates/default/assets/js/packages/FileSaver.min.js -> build/bdist.linux-armv7l/wheel/multiqc/templates/default/assets/js/packages 2024-07-09T19:02:02,501 copying build/lib/multiqc/templates/default/assets/js/packages/pako_inflate.min.js -> build/bdist.linux-armv7l/wheel/multiqc/templates/default/assets/js/packages 2024-07-09T19:02:02,504 copying build/lib/multiqc/templates/default/assets/js/tables.js -> build/bdist.linux-armv7l/wheel/multiqc/templates/default/assets/js 2024-07-09T19:02:02,507 copying build/lib/multiqc/templates/default/assets/js/flat.js -> build/bdist.linux-armv7l/wheel/multiqc/templates/default/assets/js 2024-07-09T19:02:02,509 copying build/lib/multiqc/templates/default/assets/js/decompress.js -> build/bdist.linux-armv7l/wheel/multiqc/templates/default/assets/js 2024-07-09T19:02:02,511 copying build/lib/multiqc/templates/default/assets/js/render.js -> build/bdist.linux-armv7l/wheel/multiqc/templates/default/assets/js 2024-07-09T19:02:02,514 copying build/lib/multiqc/templates/default/assets/js/plotting.js -> build/bdist.linux-armv7l/wheel/multiqc/templates/default/assets/js 2024-07-09T19:02:02,516 copying build/lib/multiqc/templates/default/assets/js/multiqc.js -> build/bdist.linux-armv7l/wheel/multiqc/templates/default/assets/js 2024-07-09T19:02:02,518 copying build/lib/multiqc/templates/default/nav.html -> build/bdist.linux-armv7l/wheel/multiqc/templates/default 2024-07-09T19:02:02,520 copying build/lib/multiqc/templates/default/head.html -> build/bdist.linux-armv7l/wheel/multiqc/templates/default 2024-07-09T19:02:02,522 copying build/lib/multiqc/templates/default/foot.html -> build/bdist.linux-armv7l/wheel/multiqc/templates/default 2024-07-09T19:02:02,524 copying build/lib/multiqc/templates/default/includes.html -> build/bdist.linux-armv7l/wheel/multiqc/templates/default 2024-07-09T19:02:02,527 copying build/lib/multiqc/templates/default/header.html -> build/bdist.linux-armv7l/wheel/multiqc/templates/default 2024-07-09T19:02:02,529 copying build/lib/multiqc/templates/default/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/templates/default 2024-07-09T19:02:02,531 copying build/lib/multiqc/templates/default/content.html -> build/bdist.linux-armv7l/wheel/multiqc/templates/default 2024-07-09T19:02:02,533 copying build/lib/multiqc/templates/default/base.html -> build/bdist.linux-armv7l/wheel/multiqc/templates/default 2024-07-09T19:02:02,534 copying build/lib/multiqc/templates/default/toolbox.html -> build/bdist.linux-armv7l/wheel/multiqc/templates/default 2024-07-09T19:02:02,537 copying build/lib/multiqc/templates/default/footer.html -> build/bdist.linux-armv7l/wheel/multiqc/templates/default 2024-07-09T19:02:02,539 creating build/bdist.linux-armv7l/wheel/multiqc/templates/sections 2024-07-09T19:02:02,540 copying build/lib/multiqc/templates/sections/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/templates/sections 2024-07-09T19:02:02,542 copying build/lib/multiqc/templates/sections/content.html -> build/bdist.linux-armv7l/wheel/multiqc/templates/sections 2024-07-09T19:02:02,545 creating build/bdist.linux-armv7l/wheel/multiqc/templates/geo 2024-07-09T19:02:02,546 creating build/bdist.linux-armv7l/wheel/multiqc/templates/geo/assets 2024-07-09T19:02:02,548 creating build/bdist.linux-armv7l/wheel/multiqc/templates/geo/assets/img 2024-07-09T19:02:02,549 copying build/lib/multiqc/templates/geo/assets/img/mchammer.gif -> build/bdist.linux-armv7l/wheel/multiqc/templates/geo/assets/img 2024-07-09T19:02:02,554 copying build/lib/multiqc/templates/geo/assets/img/stars.gif -> build/bdist.linux-armv7l/wheel/multiqc/templates/geo/assets/img 2024-07-09T19:02:02,556 copying build/lib/multiqc/templates/geo/assets/img/flames.gif -> build/bdist.linux-armv7l/wheel/multiqc/templates/geo/assets/img 2024-07-09T19:02:02,559 copying build/lib/multiqc/templates/geo/assets/img/new2.gif -> build/bdist.linux-armv7l/wheel/multiqc/templates/geo/assets/img 2024-07-09T19:02:02,561 copying build/lib/multiqc/templates/geo/assets/img/hot.gif -> build/bdist.linux-armv7l/wheel/multiqc/templates/geo/assets/img 2024-07-09T19:02:02,564 copying build/lib/multiqc/templates/geo/assets/img/emailme.gif -> build/bdist.linux-armv7l/wheel/multiqc/templates/geo/assets/img 2024-07-09T19:02:02,566 copying build/lib/multiqc/templates/geo/assets/img/rainbow.gif -> build/bdist.linux-armv7l/wheel/multiqc/templates/geo/assets/img 2024-07-09T19:02:02,568 copying build/lib/multiqc/templates/geo/assets/img/microfab.gif -> build/bdist.linux-armv7l/wheel/multiqc/templates/geo/assets/img 2024-07-09T19:02:02,571 copying build/lib/multiqc/templates/geo/assets/img/glyphicons-halflings-white.png -> build/bdist.linux-armv7l/wheel/multiqc/templates/geo/assets/img 2024-07-09T19:02:02,574 copying build/lib/multiqc/templates/geo/assets/img/new.gif -> build/bdist.linux-armv7l/wheel/multiqc/templates/geo/assets/img 2024-07-09T19:02:02,577 copying build/lib/multiqc/templates/geo/assets/img/progress.gif -> build/bdist.linux-armv7l/wheel/multiqc/templates/geo/assets/img 2024-07-09T19:02:02,579 copying build/lib/multiqc/templates/geo/assets/img/glyphicons-halflings.png -> build/bdist.linux-armv7l/wheel/multiqc/templates/geo/assets/img 2024-07-09T19:02:02,581 creating build/bdist.linux-armv7l/wheel/multiqc/templates/geo/assets/css 2024-07-09T19:02:02,582 copying build/lib/multiqc/templates/geo/assets/css/bootstrap.min.css -> build/bdist.linux-armv7l/wheel/multiqc/templates/geo/assets/css 2024-07-09T19:02:02,586 copying build/lib/multiqc/templates/geo/includes.html -> build/bdist.linux-armv7l/wheel/multiqc/templates/geo 2024-07-09T19:02:02,588 copying build/lib/multiqc/templates/geo/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/templates/geo 2024-07-09T19:02:02,590 creating build/bdist.linux-armv7l/wheel/multiqc/templates/gathered 2024-07-09T19:02:02,591 copying build/lib/multiqc/templates/gathered/nav.html -> build/bdist.linux-armv7l/wheel/multiqc/templates/gathered 2024-07-09T19:02:02,593 copying build/lib/multiqc/templates/gathered/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/templates/gathered 2024-07-09T19:02:02,595 copying build/lib/multiqc/templates/gathered/content.html -> build/bdist.linux-armv7l/wheel/multiqc/templates/gathered 2024-07-09T19:02:02,597 copying build/lib/multiqc/base_module.py -> build/bdist.linux-armv7l/wheel/multiqc 2024-07-09T19:02:02,599 copying build/lib/multiqc/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc 2024-07-09T19:02:02,602 creating build/bdist.linux-armv7l/wheel/multiqc/utils 2024-07-09T19:02:02,603 copying build/lib/multiqc/utils/mqc_colour.py -> build/bdist.linux-armv7l/wheel/multiqc/utils 2024-07-09T19:02:02,606 copying build/lib/multiqc/utils/testing.py -> build/bdist.linux-armv7l/wheel/multiqc/utils 2024-07-09T19:02:02,607 copying build/lib/multiqc/utils/config.py -> build/bdist.linux-armv7l/wheel/multiqc/utils 2024-07-09T19:02:02,609 copying build/lib/multiqc/utils/report.py -> build/bdist.linux-armv7l/wheel/multiqc/utils 2024-07-09T19:02:02,611 copying build/lib/multiqc/utils/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/utils 2024-07-09T19:02:02,613 copying build/lib/multiqc/utils/megaqc.py -> build/bdist.linux-armv7l/wheel/multiqc/utils 2024-07-09T19:02:02,615 copying build/lib/multiqc/utils/util_functions.py -> build/bdist.linux-armv7l/wheel/multiqc/utils 2024-07-09T19:02:02,617 copying build/lib/multiqc/search_patterns.yaml -> build/bdist.linux-armv7l/wheel/multiqc 2024-07-09T19:02:02,620 copying build/lib/multiqc/__main__.py -> build/bdist.linux-armv7l/wheel/multiqc 2024-07-09T19:02:02,622 running install_egg_info 2024-07-09T19:02:02,625 Copying multiqc.egg-info to build/bdist.linux-armv7l/wheel/multiqc-1.23-py3.11.egg-info 2024-07-09T19:02:02,640 running install_scripts 2024-07-09T19:02:02,667 creating build/bdist.linux-armv7l/wheel/multiqc-1.23.dist-info/WHEEL 2024-07-09T19:02:02,670 creating '/tmp/pip-wheel-_6dmoobp/.tmp-_8glcnfs/multiqc-1.23-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2024-07-09T19:02:02,672 adding 'multiqc/__init__.py' 2024-07-09T19:02:02,674 adding 'multiqc/__main__.py' 2024-07-09T19:02:02,678 adding 'multiqc/base_module.py' 2024-07-09T19:02:02,682 adding 'multiqc/config.py' 2024-07-09T19:02:02,684 adding 'multiqc/config_defaults.yaml' 2024-07-09T19:02:02,687 adding 'multiqc/interactive.py' 2024-07-09T19:02:02,690 adding 'multiqc/multiqc.py' 2024-07-09T19:02:02,696 adding 'multiqc/report.py' 2024-07-09T19:02:02,700 adding 'multiqc/search_patterns.yaml' 2024-07-09T19:02:02,702 adding 'multiqc/validation.py' 2024-07-09T19:02:02,704 adding 'multiqc/core/__init__.py' 2024-07-09T19:02:02,706 adding 'multiqc/core/exceptions.py' 2024-07-09T19:02:02,708 adding 'multiqc/core/exec_modules.py' 2024-07-09T19:02:02,710 adding 'multiqc/core/file_search.py' 2024-07-09T19:02:02,712 adding 'multiqc/core/log_and_rich.py' 2024-07-09T19:02:02,714 adding 'multiqc/core/order_modules_and_sections.py' 2024-07-09T19:02:02,716 adding 'multiqc/core/plugin_hooks.py' 2024-07-09T19:02:02,718 adding 'multiqc/core/software_versions.py' 2024-07-09T19:02:02,720 adding 'multiqc/core/strict_helpers.py' 2024-07-09T19:02:02,721 adding 'multiqc/core/tmp_dir.py' 2024-07-09T19:02:02,724 adding 'multiqc/core/update_config.py' 2024-07-09T19:02:02,725 adding 'multiqc/core/version_check.py' 2024-07-09T19:02:02,729 adding 'multiqc/core/write_results.py' 2024-07-09T19:02:02,733 adding 'multiqc/modules/__init__.py' 2024-07-09T19:02:02,735 adding 'multiqc/modules/profile_runtime.py' 2024-07-09T19:02:02,737 adding 'multiqc/modules/software_versions.py' 2024-07-09T19:02:02,739 adding 'multiqc/modules/adapterremoval/__init__.py' 2024-07-09T19:02:02,742 adding 'multiqc/modules/adapterremoval/adapterremoval.py' 2024-07-09T19:02:02,744 adding 'multiqc/modules/afterqc/__init__.py' 2024-07-09T19:02:02,746 adding 'multiqc/modules/afterqc/afterqc.py' 2024-07-09T19:02:02,748 adding 'multiqc/modules/anglerfish/__init__.py' 2024-07-09T19:02:02,750 adding 'multiqc/modules/anglerfish/anglerfish.py' 2024-07-09T19:02:02,752 adding 'multiqc/modules/bakta/__init__.py' 2024-07-09T19:02:02,754 adding 'multiqc/modules/bakta/bakta.py' 2024-07-09T19:02:02,756 adding 'multiqc/modules/bamdst/__init__.py' 2024-07-09T19:02:02,758 adding 'multiqc/modules/bamdst/bamdst.py' 2024-07-09T19:02:02,760 adding 'multiqc/modules/bamtools/__init__.py' 2024-07-09T19:02:02,762 adding 'multiqc/modules/bamtools/bamtools.py' 2024-07-09T19:02:02,764 adding 'multiqc/modules/bamtools/stats.py' 2024-07-09T19:02:02,766 adding 'multiqc/modules/bbduk/__init__.py' 2024-07-09T19:02:02,768 adding 'multiqc/modules/bbduk/bbduk.py' 2024-07-09T19:02:02,770 adding 'multiqc/modules/bbmap/__init__.py' 2024-07-09T19:02:02,772 adding 'multiqc/modules/bbmap/bbmap.py' 2024-07-09T19:02:02,775 adding 'multiqc/modules/bbmap/bbmap_filetypes.py' 2024-07-09T19:02:02,777 adding 'multiqc/modules/bbmap/plot_aqhist.py' 2024-07-09T19:02:02,778 adding 'multiqc/modules/bbmap/plot_basic_hist.py' 2024-07-09T19:02:02,780 adding 'multiqc/modules/bbmap/plot_bhist.py' 2024-07-09T19:02:02,782 adding 'multiqc/modules/bbmap/plot_bqhist.py' 2024-07-09T19:02:02,783 adding 'multiqc/modules/bbmap/plot_covhist.py' 2024-07-09T19:02:02,785 adding 'multiqc/modules/bbmap/plot_idhist.py' 2024-07-09T19:02:02,787 adding 'multiqc/modules/bbmap/plot_ihist.py' 2024-07-09T19:02:02,789 adding 'multiqc/modules/bbmap/plot_indelhist.py' 2024-07-09T19:02:02,790 adding 'multiqc/modules/bbmap/plot_mhist.py' 2024-07-09T19:02:02,792 adding 'multiqc/modules/bbmap/plot_qahist.py' 2024-07-09T19:02:02,794 adding 'multiqc/modules/bbmap/plot_qchist.py' 2024-07-09T19:02:02,795 adding 'multiqc/modules/bbmap/plot_qhist.py' 2024-07-09T19:02:02,797 adding 'multiqc/modules/bcftools/__init__.py' 2024-07-09T19:02:02,799 adding 'multiqc/modules/bcftools/bcftools.py' 2024-07-09T19:02:02,802 adding 'multiqc/modules/bcftools/stats.py' 2024-07-09T19:02:02,804 adding 'multiqc/modules/bcl2fastq/__init__.py' 2024-07-09T19:02:02,807 adding 'multiqc/modules/bcl2fastq/bcl2fastq.py' 2024-07-09T19:02:02,809 adding 'multiqc/modules/bclconvert/__init__.py' 2024-07-09T19:02:02,813 adding 'multiqc/modules/bclconvert/bclconvert.py' 2024-07-09T19:02:02,816 adding 'multiqc/modules/biobambam2/__init__.py' 2024-07-09T19:02:02,817 adding 'multiqc/modules/biobambam2/biobambam2.py' 2024-07-09T19:02:02,819 adding 'multiqc/modules/biobloomtools/__init__.py' 2024-07-09T19:02:02,821 adding 'multiqc/modules/biobloomtools/biobloomtools.py' 2024-07-09T19:02:02,823 adding 'multiqc/modules/biscuit/__init__.py' 2024-07-09T19:02:02,828 adding 'multiqc/modules/biscuit/biscuit.py' 2024-07-09T19:02:02,830 adding 'multiqc/modules/bismark/__init__.py' 2024-07-09T19:02:02,833 adding 'multiqc/modules/bismark/bismark.py' 2024-07-09T19:02:02,835 adding 'multiqc/modules/bowtie1/__init__.py' 2024-07-09T19:02:02,837 adding 'multiqc/modules/bowtie1/bowtie1.py' 2024-07-09T19:02:02,839 adding 'multiqc/modules/bowtie2/__init__.py' 2024-07-09T19:02:02,841 adding 'multiqc/modules/bowtie2/bowtie2.py' 2024-07-09T19:02:02,843 adding 'multiqc/modules/bracken/__init__.py' 2024-07-09T19:02:02,845 adding 'multiqc/modules/bracken/bracken.py' 2024-07-09T19:02:02,846 adding 'multiqc/modules/busco/__init__.py' 2024-07-09T19:02:02,848 adding 'multiqc/modules/busco/busco.py' 2024-07-09T19:02:02,850 adding 'multiqc/modules/bustools/__init__.py' 2024-07-09T19:02:02,852 adding 'multiqc/modules/bustools/bustools.py' 2024-07-09T19:02:02,854 adding 'multiqc/modules/ccs/__init__.py' 2024-07-09T19:02:02,857 adding 'multiqc/modules/ccs/ccs.py' 2024-07-09T19:02:02,859 adding 'multiqc/modules/ccs/tests/__init__.py' 2024-07-09T19:02:02,861 adding 'multiqc/modules/ccs/tests/test_ccs.py' 2024-07-09T19:02:02,863 adding 'multiqc/modules/cellranger/__init__.py' 2024-07-09T19:02:02,864 adding 'multiqc/modules/cellranger/cellranger.py' 2024-07-09T19:02:02,867 adding 'multiqc/modules/cellranger/count.py' 2024-07-09T19:02:02,869 adding 'multiqc/modules/cellranger/utils.py' 2024-07-09T19:02:02,872 adding 'multiqc/modules/cellranger/vdj.py' 2024-07-09T19:02:02,874 adding 'multiqc/modules/checkqc/__init__.py' 2024-07-09T19:02:02,877 adding 'multiqc/modules/checkqc/checkqc.py' 2024-07-09T19:02:02,879 adding 'multiqc/modules/clipandmerge/__init__.py' 2024-07-09T19:02:02,880 adding 'multiqc/modules/clipandmerge/clipandmerge.py' 2024-07-09T19:02:02,882 adding 'multiqc/modules/clusterflow/__init__.py' 2024-07-09T19:02:02,885 adding 'multiqc/modules/clusterflow/clusterflow.py' 2024-07-09T19:02:02,887 adding 'multiqc/modules/conpair/__init__.py' 2024-07-09T19:02:02,889 adding 'multiqc/modules/conpair/conpair.py' 2024-07-09T19:02:02,891 adding 'multiqc/modules/custom_content/__init__.py' 2024-07-09T19:02:02,895 adding 'multiqc/modules/custom_content/custom_content.py' 2024-07-09T19:02:02,897 adding 'multiqc/modules/cutadapt/__init__.py' 2024-07-09T19:02:02,900 adding 'multiqc/modules/cutadapt/cutadapt.py' 2024-07-09T19:02:02,902 adding 'multiqc/modules/damageprofiler/__init__.py' 2024-07-09T19:02:02,904 adding 'multiqc/modules/damageprofiler/damageprofiler.py' 2024-07-09T19:02:02,907 adding 'multiqc/modules/dedup/__init__.py' 2024-07-09T19:02:02,909 adding 'multiqc/modules/dedup/dedup.py' 2024-07-09T19:02:02,911 adding 'multiqc/modules/deeptools/__init__.py' 2024-07-09T19:02:02,912 adding 'multiqc/modules/deeptools/bamPEFragmentSizeDistribution.py' 2024-07-09T19:02:02,914 adding 'multiqc/modules/deeptools/bamPEFragmentSizeTable.py' 2024-07-09T19:02:02,916 adding 'multiqc/modules/deeptools/deeptools.py' 2024-07-09T19:02:02,918 adding 'multiqc/modules/deeptools/estimateReadFiltering.py' 2024-07-09T19:02:02,920 adding 'multiqc/modules/deeptools/plotCorrelation.py' 2024-07-09T19:02:02,922 adding 'multiqc/modules/deeptools/plotCoverage.py' 2024-07-09T19:02:02,924 adding 'multiqc/modules/deeptools/plotEnrichment.py' 2024-07-09T19:02:02,926 adding 'multiqc/modules/deeptools/plotFingerprint.py' 2024-07-09T19:02:02,928 adding 'multiqc/modules/deeptools/plotPCA.py' 2024-07-09T19:02:02,929 adding 'multiqc/modules/deeptools/plotProfile.py' 2024-07-09T19:02:02,931 adding 'multiqc/modules/diamond/__init__.py' 2024-07-09T19:02:02,933 adding 'multiqc/modules/diamond/diamond.py' 2024-07-09T19:02:02,935 adding 'multiqc/modules/disambiguate/__init__.py' 2024-07-09T19:02:02,937 adding 'multiqc/modules/disambiguate/disambiguate.py' 2024-07-09T19:02:02,939 adding 'multiqc/modules/dragen/__init__.py' 2024-07-09T19:02:02,941 adding 'multiqc/modules/dragen/coverage_hist.py' 2024-07-09T19:02:02,950 adding 'multiqc/modules/dragen/coverage_metrics.py' 2024-07-09T19:02:02,953 adding 'multiqc/modules/dragen/coverage_per_contig.py' 2024-07-09T19:02:02,955 adding 'multiqc/modules/dragen/dragen.py' 2024-07-09T19:02:02,957 adding 'multiqc/modules/dragen/dragen_gc_metrics.py' 2024-07-09T19:02:02,958 adding 'multiqc/modules/dragen/fragment_length.py' 2024-07-09T19:02:02,962 adding 'multiqc/modules/dragen/mapping_metrics.py' 2024-07-09T19:02:02,965 adding 'multiqc/modules/dragen/overall_mean_cov.py' 2024-07-09T19:02:02,966 adding 'multiqc/modules/dragen/ploidy_estimation_metrics.py' 2024-07-09T19:02:02,968 adding 'multiqc/modules/dragen/rna_quant_metrics.py' 2024-07-09T19:02:02,970 adding 'multiqc/modules/dragen/rna_transcript_cov.py' 2024-07-09T19:02:02,972 adding 'multiqc/modules/dragen/sc_atac_metrics.py' 2024-07-09T19:02:02,974 adding 'multiqc/modules/dragen/sc_rna_metrics.py' 2024-07-09T19:02:02,975 adding 'multiqc/modules/dragen/time_metrics.py' 2024-07-09T19:02:02,977 adding 'multiqc/modules/dragen/trimmer_metrics.py' 2024-07-09T19:02:02,980 adding 'multiqc/modules/dragen/utils.py' 2024-07-09T19:02:02,982 adding 'multiqc/modules/dragen/vc_metrics.py' 2024-07-09T19:02:02,984 adding 'multiqc/modules/dragen/tests/__init__.py' 2024-07-09T19:02:02,986 adding 'multiqc/modules/dragen/tests/test_dragen.py' 2024-07-09T19:02:02,988 adding 'multiqc/modules/dragen_fastqc/__init__.py' 2024-07-09T19:02:02,990 adding 'multiqc/modules/dragen_fastqc/base_metrics.py' 2024-07-09T19:02:02,993 adding 'multiqc/modules/dragen_fastqc/content_metrics.py' 2024-07-09T19:02:02,994 adding 'multiqc/modules/dragen_fastqc/dragen_fastqc.py' 2024-07-09T19:02:02,997 adding 'multiqc/modules/dragen_fastqc/gc_metrics.py' 2024-07-09T19:02:02,998 adding 'multiqc/modules/dragen_fastqc/read_metrics.py' 2024-07-09T19:02:03,000 adding 'multiqc/modules/dragen_fastqc/util.py' 2024-07-09T19:02:03,005 adding 'multiqc/modules/dragen_fastqc/assets/js/multiqc_dragen_fastqc.js' 2024-07-09T19:02:03,007 adding 'multiqc/modules/eigenstratdatabasetools/__init__.py' 2024-07-09T19:02:03,008 adding 'multiqc/modules/eigenstratdatabasetools/eigenstratdatabasetools.py' 2024-07-09T19:02:03,010 adding 'multiqc/modules/fastp/__init__.py' 2024-07-09T19:02:03,013 adding 'multiqc/modules/fastp/fastp.py' 2024-07-09T19:02:03,015 adding 'multiqc/modules/fastq_screen/__init__.py' 2024-07-09T19:02:03,018 adding 'multiqc/modules/fastq_screen/fastq_screen.py' 2024-07-09T19:02:03,020 adding 'multiqc/modules/fastqc/__init__.py' 2024-07-09T19:02:03,027 adding 'multiqc/modules/fastqc/fastqc.py' 2024-07-09T19:02:03,030 adding 'multiqc/modules/fastqc/assets/css/multiqc_fastqc.css' 2024-07-09T19:02:03,034 adding 'multiqc/modules/fastqc/assets/js/multiqc_fastqc.js' 2024-07-09T19:02:03,036 adding 'multiqc/modules/fastqc/fastqc_theoretical_gc/fastqc_theoretical_gc_hg38_genome.txt' 2024-07-09T19:02:03,038 adding 'multiqc/modules/fastqc/fastqc_theoretical_gc/fastqc_theoretical_gc_hg38_txome.txt' 2024-07-09T19:02:03,039 adding 'multiqc/modules/fastqc/fastqc_theoretical_gc/fastqc_theoretical_gc_mm10_genome.txt' 2024-07-09T19:02:03,041 adding 'multiqc/modules/fastqc/fastqc_theoretical_gc/fastqc_theoretical_gc_mm10_txome.txt' 2024-07-09T19:02:03,043 adding 'multiqc/modules/featureCounts/__init__.py' 2024-07-09T19:02:03,045 adding 'multiqc/modules/featureCounts/feature_counts.py' 2024-07-09T19:02:03,048 adding 'multiqc/modules/fgbio/ErrorRateByReadPosition.py' 2024-07-09T19:02:03,049 adding 'multiqc/modules/fgbio/__init__.py' 2024-07-09T19:02:03,051 adding 'multiqc/modules/fgbio/fgbio.py' 2024-07-09T19:02:03,053 adding 'multiqc/modules/fgbio/groupreadsbyumi.py' 2024-07-09T19:02:03,055 adding 'multiqc/modules/filtlong/__init__.py' 2024-07-09T19:02:03,056 adding 'multiqc/modules/filtlong/filtlong.py' 2024-07-09T19:02:03,058 adding 'multiqc/modules/flash/__init__.py' 2024-07-09T19:02:03,060 adding 'multiqc/modules/flash/flash.py' 2024-07-09T19:02:03,062 adding 'multiqc/modules/flexbar/__init__.py' 2024-07-09T19:02:03,064 adding 'multiqc/modules/flexbar/flexbar.py' 2024-07-09T19:02:03,066 adding 'multiqc/modules/freyja/__init__.py' 2024-07-09T19:02:03,068 adding 'multiqc/modules/freyja/freyja.py' 2024-07-09T19:02:03,070 adding 'multiqc/modules/gatk/__init__.py' 2024-07-09T19:02:03,073 adding 'multiqc/modules/gatk/analyze_saturation_mutagenesis.py' 2024-07-09T19:02:03,075 adding 'multiqc/modules/gatk/base_recalibrator.py' 2024-07-09T19:02:03,077 adding 'multiqc/modules/gatk/gatk.py' 2024-07-09T19:02:03,079 adding 'multiqc/modules/gatk/varianteval.py' 2024-07-09T19:02:03,081 adding 'multiqc/modules/gffcompare/__init__.py' 2024-07-09T19:02:03,083 adding 'multiqc/modules/gffcompare/gffcompare.py' 2024-07-09T19:02:03,086 adding 'multiqc/modules/glimpse/__init__.py' 2024-07-09T19:02:03,088 adding 'multiqc/modules/glimpse/err_grp.py' 2024-07-09T19:02:03,090 adding 'multiqc/modules/glimpse/err_spl.py' 2024-07-09T19:02:03,091 adding 'multiqc/modules/glimpse/glimpse.py' 2024-07-09T19:02:03,094 adding 'multiqc/modules/goleft_indexcov/__init__.py' 2024-07-09T19:02:03,096 adding 'multiqc/modules/goleft_indexcov/goleft_indexcov.py' 2024-07-09T19:02:03,098 adding 'multiqc/modules/gopeaks/__init__.py' 2024-07-09T19:02:03,099 adding 'multiqc/modules/gopeaks/gopeaks.py' 2024-07-09T19:02:03,102 adding 'multiqc/modules/happy/__init__.py' 2024-07-09T19:02:03,104 adding 'multiqc/modules/happy/happy.py' 2024-07-09T19:02:03,106 adding 'multiqc/modules/hicexplorer/__init__.py' 2024-07-09T19:02:03,108 adding 'multiqc/modules/hicexplorer/hicexplorer.py' 2024-07-09T19:02:03,109 adding 'multiqc/modules/hicpro/__init__.py' 2024-07-09T19:02:03,112 adding 'multiqc/modules/hicpro/hicpro.py' 2024-07-09T19:02:03,113 adding 'multiqc/modules/hicup/__init__.py' 2024-07-09T19:02:03,115 adding 'multiqc/modules/hicup/hicup.py' 2024-07-09T19:02:03,117 adding 'multiqc/modules/hifiasm/__init__.py' 2024-07-09T19:02:03,118 adding 'multiqc/modules/hifiasm/hifiasm.py' 2024-07-09T19:02:03,120 adding 'multiqc/modules/hisat2/__init__.py' 2024-07-09T19:02:03,122 adding 'multiqc/modules/hisat2/hisat2.py' 2024-07-09T19:02:03,123 adding 'multiqc/modules/homer/__init__.py' 2024-07-09T19:02:03,125 adding 'multiqc/modules/homer/findpeaks.py' 2024-07-09T19:02:03,126 adding 'multiqc/modules/homer/homer.py' 2024-07-09T19:02:03,128 adding 'multiqc/modules/homer/tagdirectory.py' 2024-07-09T19:02:03,130 adding 'multiqc/modules/hops/__init__.py' 2024-07-09T19:02:03,132 adding 'multiqc/modules/hops/hops.py' 2024-07-09T19:02:03,133 adding 'multiqc/modules/hostile/__init__.py' 2024-07-09T19:02:03,135 adding 'multiqc/modules/hostile/hostile.py' 2024-07-09T19:02:03,137 adding 'multiqc/modules/htseq/__init__.py' 2024-07-09T19:02:03,138 adding 'multiqc/modules/htseq/htseq.py' 2024-07-09T19:02:03,140 adding 'multiqc/modules/humid/__init__.py' 2024-07-09T19:02:03,141 adding 'multiqc/modules/humid/clusters.py' 2024-07-09T19:02:03,142 adding 'multiqc/modules/humid/counts.py' 2024-07-09T19:02:03,143 adding 'multiqc/modules/humid/humid.py' 2024-07-09T19:02:03,145 adding 'multiqc/modules/humid/neighbours.py' 2024-07-09T19:02:03,146 adding 'multiqc/modules/humid/stats.py' 2024-07-09T19:02:03,148 adding 'multiqc/modules/interop/__init__.py' 2024-07-09T19:02:03,150 adding 'multiqc/modules/interop/interop.py' 2024-07-09T19:02:03,151 adding 'multiqc/modules/isoseq/__init__.py' 2024-07-09T19:02:03,153 adding 'multiqc/modules/isoseq/isoseq.py' 2024-07-09T19:02:03,155 adding 'multiqc/modules/ivar/__init__.py' 2024-07-09T19:02:03,156 adding 'multiqc/modules/ivar/ivar.py' 2024-07-09T19:02:03,158 adding 'multiqc/modules/jcvi/__init__.py' 2024-07-09T19:02:03,160 adding 'multiqc/modules/jcvi/jcvi.py' 2024-07-09T19:02:03,161 adding 'multiqc/modules/jellyfish/__init__.py' 2024-07-09T19:02:03,162 adding 'multiqc/modules/jellyfish/jellyfish.py' 2024-07-09T19:02:03,164 adding 'multiqc/modules/kaiju/__init__.py' 2024-07-09T19:02:03,166 adding 'multiqc/modules/kaiju/kaiju.py' 2024-07-09T19:02:03,168 adding 'multiqc/modules/kallisto/__init__.py' 2024-07-09T19:02:03,169 adding 'multiqc/modules/kallisto/kallisto.py' 2024-07-09T19:02:03,171 adding 'multiqc/modules/kat/__init__.py' 2024-07-09T19:02:03,172 adding 'multiqc/modules/kat/kat.py' 2024-07-09T19:02:03,174 adding 'multiqc/modules/kraken/__init__.py' 2024-07-09T19:02:03,176 adding 'multiqc/modules/kraken/kraken.py' 2024-07-09T19:02:03,178 adding 'multiqc/modules/leehom/__init__.py' 2024-07-09T19:02:03,179 adding 'multiqc/modules/leehom/leehom.py' 2024-07-09T19:02:03,181 adding 'multiqc/modules/librarian/__init__.py' 2024-07-09T19:02:03,183 adding 'multiqc/modules/librarian/librarian.py' 2024-07-09T19:02:03,184 adding 'multiqc/modules/lima/__init__.py' 2024-07-09T19:02:03,186 adding 'multiqc/modules/lima/lima.py' 2024-07-09T19:02:03,188 adding 'multiqc/modules/longranger/__init__.py' 2024-07-09T19:02:03,190 adding 'multiqc/modules/longranger/longranger.py' 2024-07-09T19:02:03,192 adding 'multiqc/modules/macs2/__init__.py' 2024-07-09T19:02:03,194 adding 'multiqc/modules/macs2/macs2.py' 2024-07-09T19:02:03,195 adding 'multiqc/modules/malt/__init__.py' 2024-07-09T19:02:03,197 adding 'multiqc/modules/malt/malt.py' 2024-07-09T19:02:03,198 adding 'multiqc/modules/mapdamage/__init__.py' 2024-07-09T19:02:03,200 adding 'multiqc/modules/mapdamage/mapdamage.py' 2024-07-09T19:02:03,202 adding 'multiqc/modules/megahit/__init__.py' 2024-07-09T19:02:03,203 adding 'multiqc/modules/megahit/megahit.py' 2024-07-09T19:02:03,205 adding 'multiqc/modules/metaphlan/__init__.py' 2024-07-09T19:02:03,207 adding 'multiqc/modules/metaphlan/metaphlan.py' 2024-07-09T19:02:03,209 adding 'multiqc/modules/methylqa/__init__.py' 2024-07-09T19:02:03,211 adding 'multiqc/modules/methylqa/methylqa.py' 2024-07-09T19:02:03,212 adding 'multiqc/modules/minionqc/__init__.py' 2024-07-09T19:02:03,214 adding 'multiqc/modules/minionqc/minionqc.py' 2024-07-09T19:02:03,216 adding 'multiqc/modules/mirtop/__init__.py' 2024-07-09T19:02:03,217 adding 'multiqc/modules/mirtop/mirtop.py' 2024-07-09T19:02:03,219 adding 'multiqc/modules/mirtrace/__init__.py' 2024-07-09T19:02:03,221 adding 'multiqc/modules/mirtrace/mirtrace.py' 2024-07-09T19:02:03,222 adding 'multiqc/modules/mosdepth/__init__.py' 2024-07-09T19:02:03,225 adding 'multiqc/modules/mosdepth/mosdepth.py' 2024-07-09T19:02:03,227 adding 'multiqc/modules/motus/__init__.py' 2024-07-09T19:02:03,229 adding 'multiqc/modules/motus/motus.py' 2024-07-09T19:02:03,231 adding 'multiqc/modules/mtnucratio/__init__.py' 2024-07-09T19:02:03,232 adding 'multiqc/modules/mtnucratio/mtnucratio.py' 2024-07-09T19:02:03,234 adding 'multiqc/modules/multivcfanalyzer/__init__.py' 2024-07-09T19:02:03,236 adding 'multiqc/modules/multivcfanalyzer/multivcfanalyzer.py' 2024-07-09T19:02:03,237 adding 'multiqc/modules/nanostat/__init__.py' 2024-07-09T19:02:03,240 adding 'multiqc/modules/nanostat/nanostat.py' 2024-07-09T19:02:03,242 adding 'multiqc/modules/nextclade/__init__.py' 2024-07-09T19:02:03,243 adding 'multiqc/modules/nextclade/nextclade.py' 2024-07-09T19:02:03,245 adding 'multiqc/modules/ngsderive/__init__.py' 2024-07-09T19:02:03,247 adding 'multiqc/modules/ngsderive/ngsderive.py' 2024-07-09T19:02:03,248 adding 'multiqc/modules/nonpareil/__init__.py' 2024-07-09T19:02:03,250 adding 'multiqc/modules/nonpareil/nonpareil.py' 2024-07-09T19:02:03,252 adding 'multiqc/modules/odgi/__init__.py' 2024-07-09T19:02:03,254 adding 'multiqc/modules/odgi/odgi.py' 2024-07-09T19:02:03,256 adding 'multiqc/modules/optitype/__init__.py' 2024-07-09T19:02:03,257 adding 'multiqc/modules/optitype/optitype.py' 2024-07-09T19:02:03,258 adding 'multiqc/modules/pangolin/__init__.py' 2024-07-09T19:02:03,260 adding 'multiqc/modules/pangolin/pangolin.py' 2024-07-09T19:02:03,262 adding 'multiqc/modules/pbmarkdup/__init__.py' 2024-07-09T19:02:03,263 adding 'multiqc/modules/pbmarkdup/pbmarkdup.py' 2024-07-09T19:02:03,265 adding 'multiqc/modules/peddy/__init__.py' 2024-07-09T19:02:03,267 adding 'multiqc/modules/peddy/peddy.py' 2024-07-09T19:02:03,268 adding 'multiqc/modules/phantompeakqualtools/__init__.py' 2024-07-09T19:02:03,269 adding 'multiqc/modules/phantompeakqualtools/phantompeakqualtools.py' 2024-07-09T19:02:03,272 adding 'multiqc/modules/picard/AlignmentSummaryMetrics.py' 2024-07-09T19:02:03,273 adding 'multiqc/modules/picard/BaseDistributionByCycleMetrics.py' 2024-07-09T19:02:03,275 adding 'multiqc/modules/picard/CrosscheckFingerprints.py' 2024-07-09T19:02:03,277 adding 'multiqc/modules/picard/ExtractIlluminaBarcodes.py' 2024-07-09T19:02:03,278 adding 'multiqc/modules/picard/GcBiasMetrics.py' 2024-07-09T19:02:03,281 adding 'multiqc/modules/picard/HsMetrics.py' 2024-07-09T19:02:03,282 adding 'multiqc/modules/picard/IlluminaBasecallingMetrics.py' 2024-07-09T19:02:03,284 adding 'multiqc/modules/picard/IlluminaLaneMetrics.py' 2024-07-09T19:02:03,286 adding 'multiqc/modules/picard/InsertSizeMetrics.py' 2024-07-09T19:02:03,288 adding 'multiqc/modules/picard/MarkDuplicates.py' 2024-07-09T19:02:03,289 adding 'multiqc/modules/picard/MarkIlluminaAdapters.py' 2024-07-09T19:02:03,290 adding 'multiqc/modules/picard/OxoGMetrics.py' 2024-07-09T19:02:03,292 adding 'multiqc/modules/picard/QualityByCycleMetrics.py' 2024-07-09T19:02:03,293 adding 'multiqc/modules/picard/QualityScoreDistributionMetrics.py' 2024-07-09T19:02:03,294 adding 'multiqc/modules/picard/QualityYieldMetrics.py' 2024-07-09T19:02:03,296 adding 'multiqc/modules/picard/RnaSeqMetrics.py' 2024-07-09T19:02:03,298 adding 'multiqc/modules/picard/RrbsSummaryMetrics.py' 2024-07-09T19:02:03,299 adding 'multiqc/modules/picard/TargetedPcrMetrics.py' 2024-07-09T19:02:03,301 adding 'multiqc/modules/picard/ValidateSamFile.py' 2024-07-09T19:02:03,303 adding 'multiqc/modules/picard/VariantCallingMetrics.py' 2024-07-09T19:02:03,305 adding 'multiqc/modules/picard/WgsMetrics.py' 2024-07-09T19:02:03,306 adding 'multiqc/modules/picard/__init__.py' 2024-07-09T19:02:03,308 adding 'multiqc/modules/picard/picard.py' 2024-07-09T19:02:03,309 adding 'multiqc/modules/picard/util.py' 2024-07-09T19:02:03,311 adding 'multiqc/modules/picard/tests/__init__.py' 2024-07-09T19:02:03,312 adding 'multiqc/modules/picard/tests/test_picard.py' 2024-07-09T19:02:03,314 adding 'multiqc/modules/porechop/__init__.py' 2024-07-09T19:02:03,316 adding 'multiqc/modules/porechop/porechop.py' 2024-07-09T19:02:03,317 adding 'multiqc/modules/preseq/__init__.py' 2024-07-09T19:02:03,320 adding 'multiqc/modules/preseq/preseq.py' 2024-07-09T19:02:03,322 adding 'multiqc/modules/prinseqplusplus/__init__.py' 2024-07-09T19:02:03,323 adding 'multiqc/modules/prinseqplusplus/prinseqplusplus.py' 2024-07-09T19:02:03,325 adding 'multiqc/modules/prokka/__init__.py' 2024-07-09T19:02:03,327 adding 'multiqc/modules/prokka/prokka.py' 2024-07-09T19:02:03,329 adding 'multiqc/modules/purple/__init__.py' 2024-07-09T19:02:03,331 adding 'multiqc/modules/purple/purple.py' 2024-07-09T19:02:03,333 adding 'multiqc/modules/pychopper/__init__.py' 2024-07-09T19:02:03,334 adding 'multiqc/modules/pychopper/pychopper.py' 2024-07-09T19:02:03,336 adding 'multiqc/modules/pycoqc/__init__.py' 2024-07-09T19:02:03,338 adding 'multiqc/modules/pycoqc/pycoqc.py' 2024-07-09T19:02:03,339 adding 'multiqc/modules/qc3C/__init__.py' 2024-07-09T19:02:03,344 adding 'multiqc/modules/qc3C/qc3C.py' 2024-07-09T19:02:03,346 adding 'multiqc/modules/qorts/__init__.py' 2024-07-09T19:02:03,348 adding 'multiqc/modules/qorts/qorts.py' 2024-07-09T19:02:03,352 adding 'multiqc/modules/qualimap/QM_BamQC.py' 2024-07-09T19:02:03,354 adding 'multiqc/modules/qualimap/QM_RNASeq.py' 2024-07-09T19:02:03,356 adding 'multiqc/modules/qualimap/__init__.py' 2024-07-09T19:02:03,357 adding 'multiqc/modules/qualimap/qualimap.py' 2024-07-09T19:02:03,358 adding 'multiqc/modules/quast/__init__.py' 2024-07-09T19:02:03,360 adding 'multiqc/modules/quast/quast.py' 2024-07-09T19:02:03,362 adding 'multiqc/modules/rna_seqc/__init__.py' 2024-07-09T19:02:03,364 adding 'multiqc/modules/rna_seqc/rna_seqc.py' 2024-07-09T19:02:03,366 adding 'multiqc/modules/rockhopper/__init__.py' 2024-07-09T19:02:03,367 adding 'multiqc/modules/rockhopper/rockhopper.py' 2024-07-09T19:02:03,369 adding 'multiqc/modules/rsem/__init__.py' 2024-07-09T19:02:03,370 adding 'multiqc/modules/rsem/rsem.py' 2024-07-09T19:02:03,372 adding 'multiqc/modules/rseqc/__init__.py' 2024-07-09T19:02:03,374 adding 'multiqc/modules/rseqc/bam_stat.py' 2024-07-09T19:02:03,375 adding 'multiqc/modules/rseqc/gene_body_coverage.py' 2024-07-09T19:02:03,376 adding 'multiqc/modules/rseqc/infer_experiment.py' 2024-07-09T19:02:03,378 adding 'multiqc/modules/rseqc/inner_distance.py' 2024-07-09T19:02:03,379 adding 'multiqc/modules/rseqc/junction_annotation.py' 2024-07-09T19:02:03,381 adding 'multiqc/modules/rseqc/junction_saturation.py' 2024-07-09T19:02:03,382 adding 'multiqc/modules/rseqc/read_distribution.py' 2024-07-09T19:02:03,383 adding 'multiqc/modules/rseqc/read_duplication.py' 2024-07-09T19:02:03,385 adding 'multiqc/modules/rseqc/read_gc.py' 2024-07-09T19:02:03,386 adding 'multiqc/modules/rseqc/rseqc.py' 2024-07-09T19:02:03,387 adding 'multiqc/modules/rseqc/tin.py' 2024-07-09T19:02:03,389 adding 'multiqc/modules/rseqc/assets/js/multiqc_rseqc.js' 2024-07-09T19:02:03,391 adding 'multiqc/modules/salmon/__init__.py' 2024-07-09T19:02:03,392 adding 'multiqc/modules/salmon/salmon.py' 2024-07-09T19:02:03,394 adding 'multiqc/modules/sambamba/__init__.py' 2024-07-09T19:02:03,396 adding 'multiqc/modules/sambamba/markdup.py' 2024-07-09T19:02:03,397 adding 'multiqc/modules/sambamba/sambamba.py' 2024-07-09T19:02:03,399 adding 'multiqc/modules/samblaster/__init__.py' 2024-07-09T19:02:03,400 adding 'multiqc/modules/samblaster/samblaster.py' 2024-07-09T19:02:03,402 adding 'multiqc/modules/samtools/__init__.py' 2024-07-09T19:02:03,404 adding 'multiqc/modules/samtools/coverage.py' 2024-07-09T19:02:03,406 adding 'multiqc/modules/samtools/flagstat.py' 2024-07-09T19:02:03,407 adding 'multiqc/modules/samtools/idxstats.py' 2024-07-09T19:02:03,409 adding 'multiqc/modules/samtools/markdup.py' 2024-07-09T19:02:03,410 adding 'multiqc/modules/samtools/rmdup.py' 2024-07-09T19:02:03,412 adding 'multiqc/modules/samtools/samtools.py' 2024-07-09T19:02:03,413 adding 'multiqc/modules/samtools/stats.py' 2024-07-09T19:02:03,415 adding 'multiqc/modules/samtools/tests/__init__.py' 2024-07-09T19:02:03,416 adding 'multiqc/modules/samtools/tests/test_flagstat.py' 2024-07-09T19:02:03,418 adding 'multiqc/modules/sargasso/__init__.py' 2024-07-09T19:02:03,419 adding 'multiqc/modules/sargasso/sargasso.py' 2024-07-09T19:02:03,421 adding 'multiqc/modules/seqera_cli/__init__.py' 2024-07-09T19:02:03,423 adding 'multiqc/modules/seqera_cli/seqera_cli.py' 2024-07-09T19:02:03,425 adding 'multiqc/modules/sequali/__init__.py' 2024-07-09T19:02:03,428 adding 'multiqc/modules/sequali/sequali.py' 2024-07-09T19:02:03,430 adding 'multiqc/modules/seqwho/__init__.py' 2024-07-09T19:02:03,432 adding 'multiqc/modules/seqwho/seqwho.py' 2024-07-09T19:02:03,433 adding 'multiqc/modules/seqyclean/__init__.py' 2024-07-09T19:02:03,434 adding 'multiqc/modules/seqyclean/seqyclean.py' 2024-07-09T19:02:03,436 adding 'multiqc/modules/sexdeterrmine/__init__.py' 2024-07-09T19:02:03,437 adding 'multiqc/modules/sexdeterrmine/sexdeterrmine.py' 2024-07-09T19:02:03,439 adding 'multiqc/modules/sickle/__init__.py' 2024-07-09T19:02:03,440 adding 'multiqc/modules/sickle/sickle.py' 2024-07-09T19:02:03,442 adding 'multiqc/modules/skewer/__init__.py' 2024-07-09T19:02:03,443 adding 'multiqc/modules/skewer/skewer.py' 2024-07-09T19:02:03,445 adding 'multiqc/modules/slamdunk/__init__.py' 2024-07-09T19:02:03,447 adding 'multiqc/modules/slamdunk/slamdunk.py' 2024-07-09T19:02:03,449 adding 'multiqc/modules/snippy/__init__.py' 2024-07-09T19:02:03,451 adding 'multiqc/modules/snippy/snippy.py' 2024-07-09T19:02:03,452 adding 'multiqc/modules/snpeff/__init__.py' 2024-07-09T19:02:03,454 adding 'multiqc/modules/snpeff/snpeff.py' 2024-07-09T19:02:03,456 adding 'multiqc/modules/snpsplit/__init__.py' 2024-07-09T19:02:03,457 adding 'multiqc/modules/snpsplit/snpsplit.py' 2024-07-09T19:02:03,459 adding 'multiqc/modules/somalier/__init__.py' 2024-07-09T19:02:03,462 adding 'multiqc/modules/somalier/somalier.py' 2024-07-09T19:02:03,464 adding 'multiqc/modules/sortmerna/__init__.py' 2024-07-09T19:02:03,465 adding 'multiqc/modules/sortmerna/sortmerna.py' 2024-07-09T19:02:03,467 adding 'multiqc/modules/sourmash/__init__.py' 2024-07-09T19:02:03,468 adding 'multiqc/modules/sourmash/compare.py' 2024-07-09T19:02:03,470 adding 'multiqc/modules/sourmash/gather.py' 2024-07-09T19:02:03,472 adding 'multiqc/modules/sourmash/sourmash.py' 2024-07-09T19:02:03,473 adding 'multiqc/modules/spaceranger/__init__.py' 2024-07-09T19:02:03,474 adding 'multiqc/modules/spaceranger/_utils.py' 2024-07-09T19:02:03,476 adding 'multiqc/modules/spaceranger/count.py' 2024-07-09T19:02:03,478 adding 'multiqc/modules/spaceranger/spaceranger.py' 2024-07-09T19:02:03,479 adding 'multiqc/modules/stacks/__init__.py' 2024-07-09T19:02:03,481 adding 'multiqc/modules/stacks/stacks.py' 2024-07-09T19:02:03,483 adding 'multiqc/modules/star/__init__.py' 2024-07-09T19:02:03,485 adding 'multiqc/modules/star/star.py' 2024-07-09T19:02:03,486 adding 'multiqc/modules/supernova/__init__.py' 2024-07-09T19:02:03,489 adding 'multiqc/modules/supernova/supernova.py' 2024-07-09T19:02:03,491 adding 'multiqc/modules/theta2/__init__.py' 2024-07-09T19:02:03,492 adding 'multiqc/modules/theta2/theta2.py' 2024-07-09T19:02:03,494 adding 'multiqc/modules/tophat/__init__.py' 2024-07-09T19:02:03,496 adding 'multiqc/modules/tophat/tophat.py' 2024-07-09T19:02:03,497 adding 'multiqc/modules/trimmomatic/__init__.py' 2024-07-09T19:02:03,499 adding 'multiqc/modules/trimmomatic/trimmomatic.py' 2024-07-09T19:02:03,501 adding 'multiqc/modules/truvari/__init__.py' 2024-07-09T19:02:03,502 adding 'multiqc/modules/truvari/bench.py' 2024-07-09T19:02:03,504 adding 'multiqc/modules/truvari/truvari.py' 2024-07-09T19:02:03,505 adding 'multiqc/modules/umitools/__init__.py' 2024-07-09T19:02:03,507 adding 'multiqc/modules/umitools/umitools.py' 2024-07-09T19:02:03,509 adding 'multiqc/modules/varscan2/__init__.py' 2024-07-09T19:02:03,511 adding 'multiqc/modules/varscan2/varscan2.py' 2024-07-09T19:02:03,513 adding 'multiqc/modules/vcftools/__init__.py' 2024-07-09T19:02:03,514 adding 'multiqc/modules/vcftools/relatedness2.py' 2024-07-09T19:02:03,515 adding 'multiqc/modules/vcftools/tstv_by_count.py' 2024-07-09T19:02:03,517 adding 'multiqc/modules/vcftools/tstv_by_qual.py' 2024-07-09T19:02:03,518 adding 'multiqc/modules/vcftools/tstv_summary.py' 2024-07-09T19:02:03,519 adding 'multiqc/modules/vcftools/vcftools.py' 2024-07-09T19:02:03,521 adding 'multiqc/modules/vep/__init__.py' 2024-07-09T19:02:03,523 adding 'multiqc/modules/vep/vep.py' 2024-07-09T19:02:03,525 adding 'multiqc/modules/verifybamid/__init__.py' 2024-07-09T19:02:03,527 adding 'multiqc/modules/verifybamid/verifybamid.py' 2024-07-09T19:02:03,529 adding 'multiqc/modules/whatshap/__init__.py' 2024-07-09T19:02:03,531 adding 'multiqc/modules/whatshap/whatshap.py' 2024-07-09T19:02:03,532 adding 'multiqc/modules/xengsort/__init__.py' 2024-07-09T19:02:03,534 adding 'multiqc/modules/xengsort/xengsort.py' 2024-07-09T19:02:03,535 adding 'multiqc/modules/xenome/__init__.py' 2024-07-09T19:02:03,537 adding 'multiqc/modules/xenome/xenome.py' 2024-07-09T19:02:03,539 adding 'multiqc/plots/__init__.py' 2024-07-09T19:02:03,540 adding 'multiqc/plots/bargraph.py' 2024-07-09T19:02:03,542 adding 'multiqc/plots/box.py' 2024-07-09T19:02:03,544 adding 'multiqc/plots/heatmap.py' 2024-07-09T19:02:03,545 adding 'multiqc/plots/linegraph.py' 2024-07-09T19:02:03,547 adding 'multiqc/plots/scatter.py' 2024-07-09T19:02:03,548 adding 'multiqc/plots/table.py' 2024-07-09T19:02:03,551 adding 'multiqc/plots/table_object.py' 2024-07-09T19:02:03,552 adding 'multiqc/plots/violin.py' 2024-07-09T19:02:03,554 adding 'multiqc/plots/plotly/__init__.py' 2024-07-09T19:02:03,556 adding 'multiqc/plots/plotly/bar.py' 2024-07-09T19:02:03,558 adding 'multiqc/plots/plotly/box.py' 2024-07-09T19:02:03,560 adding 'multiqc/plots/plotly/heatmap.py' 2024-07-09T19:02:03,562 adding 'multiqc/plots/plotly/line.py' 2024-07-09T19:02:03,567 adding 'multiqc/plots/plotly/plot.py' 2024-07-09T19:02:03,569 adding 'multiqc/plots/plotly/scatter.py' 2024-07-09T19:02:03,572 adding 'multiqc/plots/plotly/table.py' 2024-07-09T19:02:03,575 adding 'multiqc/plots/plotly/violin.py' 2024-07-09T19:02:03,577 adding 'multiqc/templates/__init__.py' 2024-07-09T19:02:03,579 adding 'multiqc/templates/default/__init__.py' 2024-07-09T19:02:03,581 adding 'multiqc/templates/default/base.html' 2024-07-09T19:02:03,583 adding 'multiqc/templates/default/content.html' 2024-07-09T19:02:03,585 adding 'multiqc/templates/default/foot.html' 2024-07-09T19:02:03,587 adding 'multiqc/templates/default/footer.html' 2024-07-09T19:02:03,588 adding 'multiqc/templates/default/general_stats.html' 2024-07-09T19:02:03,589 adding 'multiqc/templates/default/head.html' 2024-07-09T19:02:03,591 adding 'multiqc/templates/default/header.html' 2024-07-09T19:02:03,592 adding 'multiqc/templates/default/includes.html' 2024-07-09T19:02:03,593 adding 'multiqc/templates/default/nav.html' 2024-07-09T19:02:03,596 adding 'multiqc/templates/default/toolbox.html' 2024-07-09T19:02:03,606 adding 'multiqc/templates/default/assets/css/bootstrap.min.css' 2024-07-09T19:02:03,609 adding 'multiqc/templates/default/assets/css/default_multiqc.css' 2024-07-09T19:02:03,611 adding 'multiqc/templates/default/assets/css/jquery.toast.css' 2024-07-09T19:02:03,615 adding 'multiqc/templates/default/assets/fonts/glyphicons-halflings-regular.eot' 2024-07-09T19:02:03,635 adding 'multiqc/templates/default/assets/fonts/glyphicons-halflings-regular.svg' 2024-07-09T19:02:03,642 adding 'multiqc/templates/default/assets/fonts/glyphicons-halflings-regular.ttf' 2024-07-09T19:02:03,646 adding 'multiqc/templates/default/assets/fonts/glyphicons-halflings-regular.woff' 2024-07-09T19:02:03,649 adding 'multiqc/templates/default/assets/fonts/glyphicons-halflings-regular.woff2' 2024-07-09T19:02:03,651 adding 'multiqc/templates/default/assets/img/MultiQC_logo.png' 2024-07-09T19:02:03,653 adding 'multiqc/templates/default/assets/img/MultiQC_logo_dark.svg' 2024-07-09T19:02:03,654 adding 'multiqc/templates/default/assets/img/favicon-16x16.png' 2024-07-09T19:02:03,656 adding 'multiqc/templates/default/assets/img/favicon-32x32.png' 2024-07-09T19:02:03,658 adding 'multiqc/templates/default/assets/img/favicon-96x96.png' 2024-07-09T19:02:03,659 adding 'multiqc/templates/default/assets/img/seqera_logo.png' 2024-07-09T19:02:03,661 adding 'multiqc/templates/default/assets/img/seqera_logo_mono.png' 2024-07-09T19:02:03,662 adding 'multiqc/templates/default/assets/js/decompress.js' 2024-07-09T19:02:03,664 adding 'multiqc/templates/default/assets/js/flat.js' 2024-07-09T19:02:03,665 adding 'multiqc/templates/default/assets/js/multiqc.js' 2024-07-09T19:02:03,668 adding 'multiqc/templates/default/assets/js/plotting.js' 2024-07-09T19:02:03,669 adding 'multiqc/templates/default/assets/js/render.js' 2024-07-09T19:02:03,671 adding 'multiqc/templates/default/assets/js/tables.js' 2024-07-09T19:02:03,676 adding 'multiqc/templates/default/assets/js/toolbox.js' 2024-07-09T19:02:03,678 adding 'multiqc/templates/default/assets/js/packages/FileSaver.min.js' 2024-07-09T19:02:03,682 adding 'multiqc/templates/default/assets/js/packages/bootstrap.min.js' 2024-07-09T19:02:03,694 adding 'multiqc/templates/default/assets/js/packages/jquery-3.1.1.min.js' 2024-07-09T19:02:03,699 adding 'multiqc/templates/default/assets/js/packages/jquery-ui.min.js' 2024-07-09T19:02:03,705 adding 'multiqc/templates/default/assets/js/packages/jquery.tablesorter.min.js' 2024-07-09T19:02:03,707 adding 'multiqc/templates/default/assets/js/packages/jquery.toast.min.js' 2024-07-09T19:02:03,719 adding 'multiqc/templates/default/assets/js/packages/jszip.min.js' 2024-07-09T19:02:03,723 adding 'multiqc/templates/default/assets/js/packages/pako_inflate.min.js' 2024-07-09T19:02:04,722 adding 'multiqc/templates/default/assets/js/packages/plotly-2.27.0.js' 2024-07-09T19:02:05,210 adding 'multiqc/templates/default/assets/js/packages/plotly-2.27.0.min.js' 2024-07-09T19:02:05,234 adding 'multiqc/templates/default/assets/js/plots/bar.js' 2024-07-09T19:02:05,236 adding 'multiqc/templates/default/assets/js/plots/box.js' 2024-07-09T19:02:05,237 adding 'multiqc/templates/default/assets/js/plots/heatmap.js' 2024-07-09T19:02:05,238 adding 'multiqc/templates/default/assets/js/plots/line.js' 2024-07-09T19:02:05,239 adding 'multiqc/templates/default/assets/js/plots/scatter.js' 2024-07-09T19:02:05,241 adding 'multiqc/templates/default/assets/js/plots/violin.js' 2024-07-09T19:02:05,243 adding 'multiqc/templates/gathered/__init__.py' 2024-07-09T19:02:05,244 adding 'multiqc/templates/gathered/content.html' 2024-07-09T19:02:05,246 adding 'multiqc/templates/gathered/nav.html' 2024-07-09T19:02:05,247 adding 'multiqc/templates/geo/__init__.py' 2024-07-09T19:02:05,249 adding 'multiqc/templates/geo/includes.html' 2024-07-09T19:02:05,259 adding 'multiqc/templates/geo/assets/css/bootstrap.min.css' 2024-07-09T19:02:05,262 adding 'multiqc/templates/geo/assets/img/emailme.gif' 2024-07-09T19:02:05,267 adding 'multiqc/templates/geo/assets/img/flames.gif' 2024-07-09T19:02:05,269 adding 'multiqc/templates/geo/assets/img/glyphicons-halflings-white.png' 2024-07-09T19:02:05,271 adding 'multiqc/templates/geo/assets/img/glyphicons-halflings.png' 2024-07-09T19:02:05,274 adding 'multiqc/templates/geo/assets/img/hot.gif' 2024-07-09T19:02:05,285 adding 'multiqc/templates/geo/assets/img/mchammer.gif' 2024-07-09T19:02:05,288 adding 'multiqc/templates/geo/assets/img/microfab.gif' 2024-07-09T19:02:05,289 adding 'multiqc/templates/geo/assets/img/new.gif' 2024-07-09T19:02:05,291 adding 'multiqc/templates/geo/assets/img/new2.gif' 2024-07-09T19:02:05,292 adding 'multiqc/templates/geo/assets/img/progress.gif' 2024-07-09T19:02:05,294 adding 'multiqc/templates/geo/assets/img/rainbow.gif' 2024-07-09T19:02:05,296 adding 'multiqc/templates/geo/assets/img/stars.gif' 2024-07-09T19:02:05,298 adding 'multiqc/templates/sections/__init__.py' 2024-07-09T19:02:05,299 adding 'multiqc/templates/sections/content.html' 2024-07-09T19:02:05,301 adding 'multiqc/templates/simple/__init__.py' 2024-07-09T19:02:05,302 adding 'multiqc/templates/simple/foot.html' 2024-07-09T19:02:05,303 adding 'multiqc/templates/simple/header.html' 2024-07-09T19:02:05,305 adding 'multiqc/templates/simple/includes.html' 2024-07-09T19:02:05,306 adding 'multiqc/templates/simple/nav.html' 2024-07-09T19:02:05,307 adding 'multiqc/templates/simple/toolbox.html' 2024-07-09T19:02:05,309 adding 'multiqc/utils/__init__.py' 2024-07-09T19:02:05,310 adding 'multiqc/utils/config.py' 2024-07-09T19:02:05,311 adding 'multiqc/utils/megaqc.py' 2024-07-09T19:02:05,314 adding 'multiqc/utils/mqc_colour.py' 2024-07-09T19:02:05,315 adding 'multiqc/utils/report.py' 2024-07-09T19:02:05,317 adding 'multiqc/utils/testing.py' 2024-07-09T19:02:05,318 adding 'multiqc/utils/util_functions.py' 2024-07-09T19:02:05,325 adding 'multiqc-1.23.dist-info/LICENSE' 2024-07-09T19:02:05,332 adding 'multiqc-1.23.dist-info/METADATA' 2024-07-09T19:02:05,333 adding 'multiqc-1.23.dist-info/WHEEL' 2024-07-09T19:02:05,334 adding 'multiqc-1.23.dist-info/entry_points.txt' 2024-07-09T19:02:05,335 adding 'multiqc-1.23.dist-info/top_level.txt' 2024-07-09T19:02:05,344 adding 'multiqc-1.23.dist-info/RECORD' 2024-07-09T19:02:05,403 removing build/bdist.linux-armv7l/wheel 2024-07-09T19:02:05,717 Building wheel for multiqc (pyproject.toml): finished with status 'done' 2024-07-09T19:02:05,813 Created wheel for multiqc: filename=multiqc-1.23-py3-none-any.whl size=4498548 sha256=d4d58019ab446a4c80f1d66cc03b17eebba63cf064080f94dd7ab111db5ae7d0 2024-07-09T19:02:05,814 Stored in directory: /tmp/pip-ephem-wheel-cache-_toj8bqy/wheels/ca/48/40/d4fe1bfc4fafd074c27052aaf426a06e0132930afa155df9cb 2024-07-09T19:02:05,863 Successfully built multiqc 2024-07-09T19:02:05,973 Removed build tracker: '/tmp/pip-build-tracker-l5r1_7ti'